Citrus Sinensis ID: 043801

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEEEEccc
Coil and Loop (DISEMBL)
TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLgmgsatetlcgqaygaqkyDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYavnfpiqklpqaqsiispsaYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW
Flexible Loop (DISEMBL)
trltrvkeltslsffqriKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW
Low Complexity Region (SEG)
TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEssaiasaaaiFVFGLIPQIFAYAVNFPIQKLPQaqsiispsayisaaTLVVHVLLSWVAIFKlgwgllgaslvlslsW
Disordered region (IsUnstruct)
*******ELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLS***
Disordered Region (DISOPRED)
****************RIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW
Disordered Region (DISEMBL)
TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW
Disordered Region (DISPRO)
******KELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.916	0.388	0.459	6e-43
Q8GXM8	476	MATE efflux family protei	no	no	0.934	0.422	0.333	6e-27
Q9SIA5	476	MATE efflux family protei	no	no	0.869	0.392	0.343	1e-25
Q9SIA3	476	MATE efflux family protei	no	no	0.893	0.403	0.334	3e-24
Q9LUH2	477	MATE efflux family protei	no	no	0.883	0.398	0.326	2e-23
Q9SIA4	476	MATE efflux family protei	no	no	0.888	0.401	0.326	3e-22
Q9LUH3	469	MATE efflux family protei	no	no	0.920	0.422	0.297	2e-21
Q9SIA1	477	MATE efflux family protei	no	no	0.869	0.392	0.317	2e-21
Q8RWF5	483	MATE efflux family protei	no	no	0.869	0.387	0.312	6e-21
Q8K0H1	567	Multidrug and toxin extru	yes	no	0.879	0.333	0.340	1e-19

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 135/198 (68%), Gaps = 1/198 (0%)

Query: 18  IKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAY 77
           +K A W E K L+ L+  +I+V +LN +++  T +F GHLG+L+LA  S+   GIQ  AY
Sbjct: 45  LKLAVW-ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAY 103

Query: 78  GLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGE 137
           G+MLGM SA +T+CGQAYGA++Y  +G+  QR+ V+  A  + L  +Y +S  IL  +G+
Sbjct: 104 GIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQ 163

Query: 138 SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAI 197
           S AIA    IF  G+IPQI+A+A+  P+Q+  QAQ+I++P AY+S    ++H LL+W+  
Sbjct: 164 SVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVT 223

Query: 198 FKLGWGLLGASLVLSLSW 215
             L +GLLGA+L+LS SW
Sbjct: 224 NVLDFGLLGAALILSFSW 241

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 21/222 (9%)

Query: 3   LTRVKELTSLSFFQRIKKATW------IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH 56
           L R ++L S        K+TW      +ELK + RLAAP   V +   L+ + + +  GH
Sbjct: 6   LPRDEQLVSC-------KSTWQSGQVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGH 58

Query: 57  LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTA 116
           +G LELA V+L  +   V  + +M G+  A ETLCGQAYGA++Y+ +G Y   +     A
Sbjct: 59  IGELELAGVALATSFTNVSGFSIMFGLVGALETLCGQAYGAEQYEKIGTYTYSA----MA 114

Query: 117 TGIPLM----VIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQ 172
           + IP+     +++I+ +++L+ LG+   I+  A  +   L+P +FA+A+  P+ +   AQ
Sbjct: 115 SNIPICFIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQ 174

Query: 173 SIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214
            ++    Y +  TL+ H+ + W  +F LG G  GA++ +SLS
Sbjct: 175 GLVISLLYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLS 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 24  IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGM 83
           +ELK + RLAAP   V +   L+ + + +  GH G L+L+ V+L N+   V  + +M G+
Sbjct: 26  VELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGL 85

Query: 84  GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLM----VIYIFSKQILLLLGESS 139
             A ETLCGQAYGA++Y+ +G Y   SA+   A+ IP+     +++++ ++IL+ LG+  
Sbjct: 86  VGALETLCGQAYGAKQYEKIGTY-AYSAI---ASNIPICFLISILWLYIEKILISLGQDP 141

Query: 140 AIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFK 199
            I+  A  + F LIP +F  A+  P+ +    Q ++ P  + +  TL+ HVL+ W  +F 
Sbjct: 142 EISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFL 201

Query: 200 LGWGLLGASLVLSLS 214
            G G  G ++  S+S
Sbjct: 202 FGLGCNGPAMATSVS 216

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 118/206 (57%), Gaps = 14/206 (6%)

Query: 20  KATW------IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQ 73
           KATW      +ELK + RLA P   V +   L+ + + +  GH G L+L+ V+L  +   
Sbjct: 16  KATWKSGQLNVELKKVSRLAVPMATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTN 75

Query: 74  VFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI----YIFSK 129
           V  + +M G+  + ETL GQAYGA++Y+ +G Y   SA+   ++ IP+ V+    +I+ +
Sbjct: 76  VSGFSIMFGLVGSLETLSGQAYGAKQYEKMGTY-TYSAI---SSNIPICVLISILWIYME 131

Query: 130 QILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVH 189
           ++L+ LG+   I+  A  +   LIP +FA+A+  P+ +   AQ ++ P  Y +  TL+ H
Sbjct: 132 KLLISLGQDPDISRVAGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPLLYFALTTLLFH 191

Query: 190 VLLSWVAIFKLGWGLLGASLVLSLSW 215
           + + W  +  LG G  GA+L +S+S+
Sbjct: 192 IAVCWTLVSALGLGSNGAALAISVSF 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 106/190 (55%)

Query: 25  ELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 84
           E K+    + P IL  +    + +++ +F  HLG LELA  +L N+   V  +  M+G+ 
Sbjct: 39  EAKAQMIYSLPMILTNVFYYCIPITSVMFASHLGQLELAGATLANSWATVSGFAFMVGLS 98

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASA 144
            + ETLCGQ +GA++Y MLGV+LQ S ++     I + + + F++ I  LL +  +I+  
Sbjct: 99  GSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQ 158

Query: 145 AAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGL 204
           AA+++    P + AY     I +  Q QSII+P    S   LV+++  ++V ++  G G 
Sbjct: 159 AALYMKYQAPGLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGF 218

Query: 205 LGASLVLSLS 214
           +GA +  S+S
Sbjct: 219 IGAPIATSIS 228

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 14/205 (6%)

Query: 20  KATW------IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQ 73
           K TW      +ELK +  LAAP   V +   L+ + + +  GH G L+L+ V+L  +   
Sbjct: 16  KDTWKSGQVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTN 75

Query: 74  VFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLM----VIYIFSK 129
           V  + ++ G+  A ETLCGQAYGA++Y+ +G Y   +    TA+ IP+     V++I+ +
Sbjct: 76  VSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSA----TASNIPICVLISVLWIYIE 131

Query: 130 QILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVH 189
           ++L+ LG+   I+  A  +   LIP +FA+A   P+ +   AQ ++ P  Y +  TL+ H
Sbjct: 132 KLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLLFH 191

Query: 190 VLLSWVAIFKLGWGLLGASLVLSLS 214
           + + W  ++  G G  GA++ +S+S
Sbjct: 192 IPVCWAFVYAFGLGSNGAAMAISVS 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 17  RIKKATWI-------ELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGN 69
           R K +T++       E K+    + P I   +    + +++ +F   LG LELA  +L N
Sbjct: 16  RDKSSTFVQKLIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQLGQLELAGATLAN 75

Query: 70  TGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSK 129
           +   V  +  M G+  A ETLCGQ +GA+ Y MLG++LQ S ++     I + +++ F++
Sbjct: 76  SWATVTGFAFMTGLSGALETLCGQGFGAKSYRMLGIHLQSSCIVSLVFTILITILWFFTE 135

Query: 130 QILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVH 189
            + LLL +  +I+  AA+++  L P + AY     I +  Q Q I++P    S   LV++
Sbjct: 136 SVFLLLRQDPSISKQAALYMKYLAPGLLAYGFLQNILRFCQTQCIVTPLVLFSFLPLVIN 195

Query: 190 VLLSWVAIFKLGWGLLGASLVLSLS 214
           +  ++  +   G G +GA +  S+S
Sbjct: 196 IGTTYALVHLAGLGFIGAPIATSIS 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 109/195 (55%), Gaps = 8/195 (4%)

Query: 25  ELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 84
           ELK++  +AAP   V +   L+ + + +  GH G L+L+ V+L      V  +G+M G+ 
Sbjct: 30  ELKNVSSMAAPMATVTVSQYLLPVISVMVAGHCGELQLSGVTLATAFANVSGFGIMYGLV 89

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMV----IYIFSKQILLLLGESSA 140
            A ETLCGQAYGA++Y  +G Y   SA++   + +P++V    ++ +  ++ + LG+   
Sbjct: 90  GALETLCGQAYGAKQYTKIGTY-TFSAIV---SNVPIVVLISILWFYMDKLFVSLGQDPD 145

Query: 141 IASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKL 200
           I+  A  +   LIP + A AV  P+ +  Q Q ++ P  Y +  TL+ H+ +  + ++  
Sbjct: 146 ISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAF 205

Query: 201 GWGLLGASLVLSLSW 215
           G G  GA+L + LS+
Sbjct: 206 GLGSNGAALAIGLSY 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 108/195 (55%), Gaps = 8/195 (4%)

Query: 25  ELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 84
           ELK+L R+A P   V +   L+ + + +  GH   L+L+ V+L  +   V  + +M G+ 
Sbjct: 30  ELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFSVMFGLA 89

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMV----IYIFSKQILLLLGESSA 140
            A ETLCGQAYGA++Y  +G Y   SA++   + +P++V    ++ +  ++ + LG+   
Sbjct: 90  GALETLCGQAYGAKQYAKIGTY-TFSAIV---SNVPIVVLISILWFYMDKLFVSLGQDPD 145

Query: 141 IASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKL 200
           I+  A  +   LIP + A AV  P+ +  Q Q ++ P  Y +  TL+ H+ +  + ++  
Sbjct: 146 ISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAF 205

Query: 201 GWGLLGASLVLSLSW 215
           G G  GA+L + LS+
Sbjct: 206 GLGSNGAALAIGLSY 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 2/191 (1%)

Query: 25  ELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 84
           EL++L  LA PA L  ++  L++  + +FCGHLG LEL AV+L    I V    +  G+ 
Sbjct: 34  ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLS 93

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASA 144
           SA +TL  Q YG+Q    +GV LQR  +IL     P   ++I ++QILLL  +   ++  
Sbjct: 94  SACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRL 153

Query: 145 AAIFVFGLIPQIFAYAVNFPIQ-KLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWG 203
              +V   IP + A A  + +Q K    Q I+ P      A  +V+ L ++V ++ L  G
Sbjct: 154 TQTYVMIFIPALPA-AFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLG 212

Query: 204 LLGASLVLSLS 214
           ++G++L  ++S
Sbjct: 213 VMGSALANTIS 223

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
255554911	510	multidrug resistance pump, putative [Ric	1.0	0.421	0.790	8e-92
224115726	501	predicted protein [Populus trichocarpa]	1.0	0.429	0.744	2e-87
356515276	517	PREDICTED: protein TRANSPARENT TESTA 12-	0.995	0.413	0.719	1e-82
224115716	508	predicted protein [Populus trichocarpa]	1.0	0.423	0.679	3e-82
357471259	519	Transparent testa 12 protein [Medicago t	0.995	0.412	0.700	1e-81
356543710	504	PREDICTED: protein TRANSPARENT TESTA 12-	0.995	0.424	0.710	1e-81
126363774	500	multi antimicrobial extrusion family pro	1.0	0.43	0.688	2e-81
356544808	517	PREDICTED: LOW QUALITY PROTEIN: protein	0.995	0.413	0.710	2e-81
359483371	504	PREDICTED: protein TRANSPARENT TESTA 12	0.990	0.422	0.774	2e-81
357453431	507	Transparent testa 12 protein [Medicago t	0.995	0.422	0.705	9e-81

>gi|255554911|ref|XP_002518493.1| multidrug resistance pump, putative [Ricinus communis] gi|223542338|gb|EEF43880.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  342 bits (876), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 170/215 (79%), Positives = 188/215 (87%)

Query: 1   TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNL 60
           + L  +   T+LS FQR+KKA  +ELK LFRLA PA+ VY+LNN+V+MSTQIFCGHLGNL
Sbjct: 32  SELEEILSNTNLSCFQRLKKAALLELKILFRLAGPAVFVYLLNNVVSMSTQIFCGHLGNL 91

Query: 61  ELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIP 120
           +LAA SLGNTGIQVFAYGLMLGMGSA ETLCGQAYGA KY+MLGVYLQRSA++L ATGIP
Sbjct: 92  QLAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAHKYEMLGVYLQRSAILLAATGIP 151

Query: 121 LMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180
           L +IY FSKQILLLLGES  IAS AAIFV+GLIPQIFAYAVNFPIQK  QAQSI+ PSAY
Sbjct: 152 LTIIYSFSKQILLLLGESKEIASEAAIFVYGLIPQIFAYAVNFPIQKFLQAQSIVFPSAY 211

Query: 181 ISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           ISA TL VHVLLSW+AI+KLGWGLLGASLVLS SW
Sbjct: 212 ISAGTLAVHVLLSWLAIYKLGWGLLGASLVLSFSW 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115726|ref|XP_002317107.1| predicted protein [Populus trichocarpa] gi|222860172|gb|EEE97719.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/215 (74%), Positives = 184/215 (85%)

Query: 1   TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNL 60
             L ++   T   + +RI+ A+W+ELK LF LAAPA++VY+LNN+V+MSTQIFCGHLGNL
Sbjct: 23  DELEQILTDTEAPYSKRIRSASWVELKLLFHLAAPAVIVYLLNNVVSMSTQIFCGHLGNL 82

Query: 61  ELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIP 120
           ELAAVSLGNTGIQVFAYGLMLGMGSA ETLCGQAYGA +++MLG+YLQRS V+L A GIP
Sbjct: 83  ELAAVSLGNTGIQVFAYGLMLGMGSAVETLCGQAYGANRHEMLGIYLQRSTVLLMAAGIP 142

Query: 121 LMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180
           LM+IYIFSK IL+LLGE   IASAAA+FVFGLIPQIFAYA NFPIQK  QAQSII+PSAY
Sbjct: 143 LMMIYIFSKPILILLGEPVNIASAAAVFVFGLIPQIFAYAANFPIQKFLQAQSIIAPSAY 202

Query: 181 ISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           IS   LVVHVLL+W+A+FK  WGLLGA LVLSLSW
Sbjct: 203 ISLGALVVHVLLTWLAVFKWNWGLLGAGLVLSLSW 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515276|ref|XP_003526327.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/214 (71%), Positives = 186/214 (86%)

Query: 2   RLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLE 61
            L R+   TS+ F +RI  ATW+ELK LF LAAPA++VY++N +++MSTQIF GHLGNLE
Sbjct: 41  ELERILSNTSVPFAKRIGPATWVELKFLFHLAAPAVIVYLINYVMSMSTQIFSGHLGNLE 100

Query: 62  LAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPL 121
           LAA SLGNTGIQVFAYGLMLGMGSA ETLCGQAYGA+K++MLG+YLQRS V+LT  GI L
Sbjct: 101 LAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKKFNMLGIYLQRSTVLLTLAGILL 160

Query: 122 MVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYI 181
            +IYIFS+ IL+ LGES  IASAAA+FV+GLIPQIFAYA+NFPIQK  QAQSI++PSAYI
Sbjct: 161 TIIYIFSEPILIFLGESPRIASAAALFVYGLIPQIFAYAINFPIQKFLQAQSIVAPSAYI 220

Query: 182 SAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           SAATL+VH++LS+V ++K+G GLLGASLVLS+SW
Sbjct: 221 SAATLLVHLVLSYVVVYKVGLGLLGASLVLSVSW 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115716|ref|XP_002317104.1| predicted protein [Populus trichocarpa] gi|222860169|gb|EEE97716.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 146/215 (67%), Positives = 185/215 (86%)

Query: 1   TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNL 60
           +RL  V   T+LS+F R+  A+WIELK LFRLAAPA+ VY++NN +++ST+IF GHLGNL
Sbjct: 32  SRLENVLNDTNLSYFMRLGLASWIELKLLFRLAAPAVFVYLINNSLSLSTRIFSGHLGNL 91

Query: 61  ELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIP 120
           E AAVSL N+G+Q+F YGLMLGMGSA ETLCGQ+YGAQ+++MLG +LQR+ V+LT TGIP
Sbjct: 92  EFAAVSLANSGVQLFVYGLMLGMGSAVETLCGQSYGAQRFEMLGTFLQRATVVLTLTGIP 151

Query: 121 LMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180
           L  +Y+F+K IL+LLGE + +ASAAA+FV+GL+PQIFAYAVNFPIQK  QAQSI++PSA 
Sbjct: 152 LAAVYVFAKPILILLGEPTTVASAAAVFVYGLLPQIFAYAVNFPIQKFLQAQSIVTPSAI 211

Query: 181 ISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           ISA TLV H+ L+W+A++KLGWGL+GASLVLSLSW
Sbjct: 212 ISAITLVFHLFLTWLAVYKLGWGLIGASLVLSLSW 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471259|ref|XP_003605914.1| Transparent testa 12 protein [Medicago truncatula] gi|355506969|gb|AES88111.1| Transparent testa 12 protein [Medicago truncatula] gi|388500538|gb|AFK38335.1| unknown [Medicago truncatula]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/214 (70%), Positives = 185/214 (86%)

Query: 2   RLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLE 61
            L R+   TS+ F +RIK ATW+E K LF LAAP+++VY++N +++MSTQIF GHLGNLE
Sbjct: 42  ELERILSDTSVPFVKRIKLATWVEFKLLFYLAAPSVIVYLINYVMSMSTQIFSGHLGNLE 101

Query: 62  LAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPL 121
           LAA SLGN GIQ+FAYGLMLGMGSA ETLCGQA+GA+KY+MLG+YLQRS V+LT  G+ L
Sbjct: 102 LAAASLGNNGIQIFAYGLMLGMGSAVETLCGQAFGAKKYEMLGIYLQRSTVLLTIAGLIL 161

Query: 122 MVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYI 181
            +IYIFS+ IL+ LGES  IASAA++FVFGLIPQIFAYA+NFPIQK  QAQSI++PSAYI
Sbjct: 162 TIIYIFSEPILIFLGESPKIASAASLFVFGLIPQIFAYAINFPIQKFLQAQSIVAPSAYI 221

Query: 182 SAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           SAATLV+H++LS+V I+++G GLLGASLVLS+SW
Sbjct: 222 SAATLVIHLVLSYVVIYQIGLGLLGASLVLSISW 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543710|ref|XP_003540303.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/214 (71%), Positives = 183/214 (85%)

Query: 2   RLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLE 61
           +L R+    +L F  R+  ATWIELK LF LAAPA++VY++N L++MSTQIF GHLGNLE
Sbjct: 28  QLERILSDDTLPFLNRVGPATWIELKLLFFLAAPAVIVYLINYLMSMSTQIFSGHLGNLE 87

Query: 62  LAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPL 121
           LAA SLGNTGIQ+FAYGLMLGMGSA ETLCGQA+GAQKY MLGVY+QRS ++L+  G+ L
Sbjct: 88  LAAASLGNTGIQMFAYGLMLGMGSAVETLCGQAFGAQKYGMLGVYMQRSTILLSLAGVVL 147

Query: 122 MVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYI 181
            VIY+FS+ +L+ LGES  IASAAA+FV+GLIPQIFAYA NFPIQK  QAQSI++PSAYI
Sbjct: 148 TVIYVFSEPMLIFLGESPRIASAAALFVYGLIPQIFAYAANFPIQKFLQAQSIVAPSAYI 207

Query: 182 SAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           SAATLVVH+ +SWVA++++G GLLGASLVLSLSW
Sbjct: 208 SAATLVVHLGMSWVAVYEIGLGLLGASLVLSLSW 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126363774|dbj|BAF47751.1| multi antimicrobial extrusion family protein [Nicotiana tabacum]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/215 (68%), Positives = 181/215 (84%)

Query: 1   TRLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNL 60
           + L  V   T L +F+R++ A+WIE + L+RLAAP++ VYM+NN ++MST+IF G LGNL
Sbjct: 22  SELEEVLSDTQLPYFRRLRYASWIEFQLLYRLAAPSVAVYMINNAMSMSTRIFSGQLGNL 81

Query: 61  ELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIP 120
           +LAA SLGN GIQ+FAYGLMLGMGSA ETLCGQAYGA +Y+MLGVYLQR+ V+L+ TGIP
Sbjct: 82  QLAAASLGNQGIQLFAYGLMLGMGSAVETLCGQAYGAHRYEMLGVYLQRATVVLSVTGIP 141

Query: 121 LMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180
           L V+Y+FSK ILL LGES  +ASAAA+FV+GLIPQIFAYAVNFPIQK  QAQSI++PSA+
Sbjct: 142 LTVVYLFSKNILLALGESKLVASAAAVFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAF 201

Query: 181 ISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           IS  TL VH+LLSWV ++K+G GLLGASLVLS SW
Sbjct: 202 ISLGTLFVHILLSWVVVYKIGLGLLGASLVLSFSW 236

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544808|ref|XP_003540839.1| PREDICTED: LOW QUALITY PROTEIN: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 152/214 (71%), Positives = 184/214 (85%)

Query: 2   RLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLE 61
            L R+   TS+ F +R+  ATW+ELK LF LAAPA++VY++N +++MSTQIF GHLGNLE
Sbjct: 40  ELERILSNTSVPFAKRLGPATWVELKLLFHLAAPAVIVYLINYVMSMSTQIFSGHLGNLE 99

Query: 62  LAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPL 121
           LAA SLGNTGIQVFAYGLMLGMGSA ETLCGQAYGA+K+DMLG+YLQRS V+LT  GI L
Sbjct: 100 LAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKKFDMLGIYLQRSTVLLTLAGIIL 159

Query: 122 MVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYI 181
            +IYIFS+ IL+ LGES  IASAAA+FV+GLIPQIFAYAVNFPIQK  QAQSI++PSAYI
Sbjct: 160 TIIYIFSEPILIFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYI 219

Query: 182 SAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           S ATL+VH++LS+  ++++G GLLGASLVLS+SW
Sbjct: 220 STATLLVHLVLSYFVVYEVGLGLLGASLVLSVSW 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483371|ref|XP_002274027.2| PREDICTED: protein TRANSPARENT TESTA 12 isoform 1 [Vitis vinifera]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 185/213 (86%)

Query: 3   LTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLEL 62
           L  V   T LS+ +RI  AT IEL  LFRLA PA++VY+LNN+ +MSTQIFCGHLGNLEL
Sbjct: 29  LEEVLSNTDLSYSRRIGSATLIELNILFRLAGPAVVVYLLNNVTSMSTQIFCGHLGNLEL 88

Query: 63  AAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLM 122
           AA +LGN GIQVF+YGLMLGMGSA ETLCGQAYGA K+DMLGVYLQRS ++LTATGIPL 
Sbjct: 89  AASALGNNGIQVFSYGLMLGMGSAVETLCGQAYGAHKFDMLGVYLQRSTILLTATGIPLT 148

Query: 123 VIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYIS 182
           +IYIFSK +LLLLGES+ IASAAAIFV+GLIPQIFAYA NFPIQK  QAQSI+ PSAYIS
Sbjct: 149 IIYIFSKDLLLLLGESTEIASAAAIFVYGLIPQIFAYATNFPIQKFLQAQSIVFPSAYIS 208

Query: 183 AATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           AATL VH+LLSW+AI+KLG GLLGASLVLSLSW
Sbjct: 209 AATLCVHLLLSWLAIYKLGLGLLGASLVLSLSW 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453431|ref|XP_003596992.1| Transparent testa 12 protein [Medicago truncatula] gi|355486040|gb|AES67243.1| Transparent testa 12 protein [Medicago truncatula]

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 178/214 (83%)

Query: 2   RLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLE 61
            L R+   T++ FF RI  ATWIEL+ LF LAAPA+ VY++N +++MSTQIF GHLGNLE
Sbjct: 30  ELERILSDTTVPFFSRIGSATWIELRLLFLLAAPAVFVYLINYVMSMSTQIFSGHLGNLE 89

Query: 62  LAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPL 121
           LAA SLGNTGIQ+FAYGLMLGMGSA ETLCGQAYGA+KY MLG YLQRS ++LT TG  L
Sbjct: 90  LAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAYGAEKYGMLGTYLQRSTILLTITGFFL 149

Query: 122 MVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYI 181
            +IY+ S+ IL+ +G+S  IASAAA+FV+GLIPQIFAYAVNFPIQK  QAQSI+ PSAYI
Sbjct: 150 TIIYVLSEPILVFIGQSPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYI 209

Query: 182 SAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           SA TLV H++LSWV +FK+G GLLGASLVLS SW
Sbjct: 210 SAGTLVFHLILSWVVVFKIGLGLLGASLVLSFSW 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2089955	506	AT3G21690 "AT3G21690" [Arabido	0.860	0.365	0.659	1.2e-60
TAIR|locus:2027322	503	AT1G11670 "AT1G11670" [Arabido	0.920	0.393	0.545	9.9e-55
TAIR|locus:2036848	501	AT1G61890 "AT1G61890" [Arabido	0.920	0.395	0.525	9.2e-52
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.809	0.349	0.465	1e-36
TAIR|locus:2010401	522	RSH2 "AT1G12950" [Arabidopsis	0.809	0.333	0.459	9.2e-36
TAIR|locus:2088822	500	AT3G26590 "AT3G26590" [Arabido	0.818	0.352	0.454	9.2e-36
TAIR|locus:2015368	484	AT1G47530 "AT1G47530" [Arabido	0.883	0.392	0.439	3.6e-34
TAIR|locus:2172477	491	AT5G44050 "AT5G44050" [Arabido	0.841	0.368	0.419	4.6e-34
TAIR|locus:2028115	515	AT1G23300 "AT1G23300" [Arabido	0.813	0.339	0.428	3.1e-32
TAIR|locus:2126036	542	AT4G00350 "AT4G00350" [Arabido	0.860	0.341	0.385	1.3e-30

TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 122/185 (65%), Positives = 141/185 (76%)

Query:    15 FQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQV 74
             F R++KAT IE K LF LAAPA++VYM+N L++MSTQIF GHLGNLELAA SLGNTGIQV
Sbjct:    42 FLRLRKATIIESKLLFNLAAPAVIVYMINYLMSMSTQIFSGHLGNLELAAASLGNTGIQV 101

Query:    75 FAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLL 134
             FAYGLMLGMGSA ETLCGQAYG +KY+MLGVYLQRS V+LT TG+ L +IY+FS+ ILL 
Sbjct:   102 FAYGLMLGMGSAVETLCGQAYGGRKYEMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLF 161

Query:   135 LGEXXXXXXXXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXXXXXTLVVHVLLSW 194
             LGE          FV+GLIPQIFAYA NFPIQK  Q              TL VH+LLSW
Sbjct:   162 LGESPAIASAASLFVYGLIPQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSW 221

Query:   195 VAIFK 199
             +A++K
Sbjct:   222 LAVYK 226

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 108/198 (54%), Positives = 142/198 (71%)

Query:     2 RLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLE 61
             R+  V   T LS+F+RI  A+ IE+K LF LAAPAI VY++NN ++M T+IF G LG+++
Sbjct:    27 RMESVLTDTHLSYFRRIYLASLIEMKYLFHLAAPAIFVYVINNGMSMLTRIFAGRLGSMQ 86

Query:    62 LAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPL 121
             LAA SLGN+G  +F  GLMLGMGSA ETLCGQA+GA +YDMLGVYLQRS ++L  TG+P+
Sbjct:    87 LAAASLGNSGFNMFTLGLMLGMGSAVETLCGQAHGAHRYDMLGVYLQRSTIVLVITGLPM 146

Query:   122 MVIYIFSKQILLLLGEXXXXXXXXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXX 181
              +++IFSK +L+ LGE          FV+G+IP IFAYAVNFPIQK  Q           
Sbjct:   147 TLLFIFSKPLLISLGEPADVASVASVFVYGMIPMIFAYAVNFPIQKFLQSQSIVTPSAYI 206

Query:   182 XXXTLVVHVLLSWVAIFK 199
                TLV+H++LSW+++FK
Sbjct:   207 SAATLVIHLILSWLSVFK 224

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 104/198 (52%), Positives = 136/198 (68%)

Query:     2 RLTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLE 61
             RL  V     L +F+RI  A  IE+K LF LAAPAI VY++NN +++ T+IF GH+G+ E
Sbjct:    24 RLETVLTDRELPYFRRIYLAMMIEMKFLFHLAAPAIFVYVINNGMSILTRIFAGHVGSFE 83

Query:    62 LAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPL 121
             LAA SLGN+G  +F YGL+LGMGSA ETLCGQA+GA +Y+MLGVYLQRS V+L  T +P+
Sbjct:    84 LAAASLGNSGFNMFTYGLLLGMGSAVETLCGQAHGAHRYEMLGVYLQRSTVVLILTCLPM 143

Query:   122 MVIYIFSKQILLLLGEXXXXXXXXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXX 181
               +++FS  IL  LGE          FV+G+IP IFAYAVNFPIQK  Q           
Sbjct:   144 SFLFLFSNPILTALGEPEQVATLASVFVYGMIPVIFAYAVNFPIQKFLQSQSIVTPSAYI 203

Query:   182 XXXTLVVHVLLSWVAIFK 199
                TLV+H++LSW+A+++
Sbjct:   204 SAATLVIHLILSWIAVYR 221

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 81/174 (46%), Positives = 107/174 (61%)

Query:    24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGM 83
             +E+K L+ LA PAI + +    +  +TQ+F GH+  + LAAVS+ N+ I  F++G+MLGM
Sbjct:    44 VEVKKLWYLAGPAIFMSITQYSLGAATQVFAGHISTIALAAVSVENSVIAGFSFGVMLGM 103

Query:    84 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEXXXXXX 143
             GSA ETLCGQA+GA K  MLGVYLQRS VIL  T + L ++YIF+  IL  +G+      
Sbjct:   104 GSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTAVILSLLYIFAAPILAFIGQTPAISS 163

Query:   144 XXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXXXXXTLVVHVLLSWVAI 197
                 F   +IPQIFAYAVN+P  K  Q               LV+HVLL+W  I
Sbjct:   164 ATGIFSIYMIPQIFAYAVNYPTAKFLQSQSKIMVMAAISAVALVLHVLLTWFVI 217

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 80/174 (45%), Positives = 104/174 (59%)

Query:    24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGM 83
             IE + L++LA PAI   M    +   TQ+F GH+  L LAAVS+ N+ I  F++G+MLGM
Sbjct:    66 IESRKLWKLAGPAIFTTMSQYSLGAVTQVFAGHISTLALAAVSIENSVIAGFSFGIMLGM 125

Query:    84 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEXXXXXX 143
             GSA ETLCGQA+GA K  MLGVYLQRS VIL+ T + L +IYIF+  IL  +G+      
Sbjct:   126 GSALETLCGQAFGAGKVSMLGVYLQRSWVILSVTALFLSLIYIFAAPILTFIGQTAAISA 185

Query:   144 XXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXXXXXTLVVHVLLSWVAI 197
                 F   +IPQIFAYA+NFP  K  Q               LV+H   +W+ +
Sbjct:   186 MAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIMVMAGISGVVLVIHSFFTWLVM 239

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 80/176 (45%), Positives = 104/176 (59%)

Query:    24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGM 83
             +E K L+ LA PAI   +    +   TQ+F GH+  + LAAVS+ N+ +  F++G+MLGM
Sbjct:    44 VETKKLWYLAGPAIFTSVNQYSLGAITQVFAGHISTIALAAVSVENSVVAGFSFGIMLGM 103

Query:    84 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEXXXXXX 143
             GSA ETLCGQA+GA K  MLGVYLQRS VIL  T + L ++YIF+  IL  +G+      
Sbjct:   104 GSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTALILSLLYIFAAPILASIGQTAAISS 163

Query:   144 XXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXXXXXTLVVHVLLSWVAIFK 199
                 F   +IPQIFAYA+NFP  K  Q               LV+HV L+W  I K
Sbjct:   164 AAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIMVMAVISAVALVIHVPLTWFVIVK 219

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 84/191 (43%), Positives = 107/191 (56%)

Query:     8 ELTSLSFFQRI-KKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVS 66
             ELT      ++  K    E K L+ LA PAI   +    +   TQ F G LG LELAAVS
Sbjct:    17 ELTGTKSASKVWAKEFGEESKRLWELAGPAIFTAISQYSLGALTQTFSGRLGELELAAVS 76

Query:    67 LGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYI 126
             + N+ I   A+G+MLGMGSA ETLCGQAYGA +  M+G+Y+QRS VIL  T + L+ +YI
Sbjct:    77 VENSVISGLAFGVMLGMGSALETLCGQAYGAGQIRMMGIYMQRSWVILFTTALFLLPVYI 136

Query:   127 FSKQILLLLGEXXXXXXXXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXXXXXTL 186
             ++  IL   GE          F   +IPQ+FAYA NFPIQK  Q               L
Sbjct:   137 WAPPILSFFGEAPHISKAAGKFALWMIPQLFAYAANFPIQKFLQSQRKVLVMAWISGVVL 196

Query:   187 VVHVLLSWVAI 197
             V+H + SW+ I
Sbjct:   197 VIHAVFSWLFI 207

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 76/181 (41%), Positives = 104/181 (57%)

Query:    18 IKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAY 77
             IKK  W+E K L+R+  PAI   +  NL+ + TQ F GHLG LELAA+S+ N  I  F Y
Sbjct:    33 IKKEIWLETKKLWRIVGPAIFTRVTTNLIFVITQAFAGHLGELELAAISIVNNVIIGFNY 92

Query:    78 GLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGE 137
              L +GM +A ETLCGQA+GA+KYDM GVYLQRS ++L    I L+ +YIF+  IL  +G+
Sbjct:    93 SLFIGMATALETLCGQAFGAKKYDMFGVYLQRSWIVLFLFSILLLPMYIFATPILKFMGQ 152

Query:   138 XXXXXXXXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXXXXXTLVVHVLLSWVAI 197
                            IP  F++A  FPI +  Q              +LVVH+ + W+ +
Sbjct:   153 PDDIAELSGIISVWAIPTHFSFAFFFPINRFLQCQLKNSVIAISSGVSLVVHIFVCWLFV 212

Query:   198 F 198
             +
Sbjct:   213 Y 213

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 3.1e-32, P = 3.1e-32
 Identities = 75/175 (42%), Positives = 99/175 (56%)

Query:    25 ELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 84
             E K L+ LA PAI        +   TQI  GH+  L LAAVS+ N+ I  F+ G+MLGMG
Sbjct:    44 ESKKLWWLAGPAIFTSFCQYSLGAVTQILAGHVNTLALAAVSIQNSVISGFSVGIMLGMG 103

Query:    85 SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEXXXXXXX 144
             SA  TLCGQAYGA + +M+G+YLQRS +IL +  + L + Y+F+  +L LLG+       
Sbjct:   104 SALATLCGQAYGAGQLEMMGIYLQRSWIILNSCALLLCLFYVFATPLLSLLGQSPEISKA 163

Query:   145 XXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXXXXXTLVVHVLLSWVAIFK 199
                F   +IPQ+FAYAVNF   K  Q               L+ H LLSW+ + K
Sbjct:   164 AGKFSLWMIPQLFAYAVNFATAKFLQAQSKVIAMAVIAATVLLQHTLLSWLLMLK 218

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 72/187 (38%), Positives = 108/187 (57%)

Query:    15 FQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQV 74
             F+  K    +E   L+ +AAP     + N  V   T IF GH+G+LEL+AV++  + +  
Sbjct:    78 FRDAKLVCVVETSKLWEIAAPIAFNILCNYGVNSFTSIFVGHIGDLELSAVAIALSVVSN 137

Query:    75 FAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLL 134
             F++G +LGM SA ETLCGQA+GA + DMLGVY+QRS +IL  T + L+ +YI++  +L+L
Sbjct:   138 FSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLLPLYIYATPLLIL 197

Query:   135 LGEXXXXXXXXXXFVFGLIPQIFAYAVNFPIQKLPQXXXXXXXXXXXXXXTLVVHVLLSW 194
             LG+          F   +IPQ+FA A+NFP QK  Q               L +H+ + +
Sbjct:   198 LGQEPEIAEISGKFTTQIIPQMFALAINFPTQKFLQSQSKVGIMAWIGFFALTLHIFILY 257

Query:   195 --VAIFK 199
               + +FK
Sbjct:   258 LFINVFK 264

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110024 hypothetical protein (501 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	3e-61
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	9e-29
pfam01554	161	pfam01554, MatE, MatE	2e-25
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	7e-19
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	2e-15
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	2e-13
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	6e-13
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	4e-12
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	6e-11
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	3e-08
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	4e-08
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	7e-08
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	9e-08
cd13141	443	cd13141, MATE_like_13, Uncharacterized subfamily o	1e-07
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	1e-07
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	2e-07
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	5e-07
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	5e-07
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	2e-06
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	3e-06
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	6e-06
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	1e-04
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	2e-04
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	3e-04
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	5e-04
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	6e-04
cd13144	434	cd13144, MATE_like_4, Uncharacterized subfamily of	8e-04
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	0.002
cd13147	441	cd13147, MATE_MJ0709_like, Uncharacterized subfami	0.002

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  197 bits (502), Expect = 3e-61
 Identities = 83/191 (43%), Positives = 131/191 (68%)

Query: 25  ELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 84
           E K L RLAAP +L  +L   +++ + +F GHLG LELAA SL ++   V  + ++LG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASA 144
           SA +TLCGQA+GA+ Y ++GVYLQR+ VIL    +P+ ++++ ++ ILLLLG+   IA  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 145 AAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGL 204
           A  ++  LIP +FAYA+  P+++  QAQ I+ P  YIS   L++++LL+++ +F LG G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 205 LGASLVLSLSW 215
           +GA+L  S+S+
Sbjct: 181 IGAALATSISY 191

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score =  109 bits (275), Expect = 9e-29
 Identities = 63/184 (34%), Positives = 107/184 (58%), Gaps = 4/184 (2%)

Query: 35  PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQA 94
           PAIL  +L  L+ +    F GHLG ++LAAVSLG++ + +F + +++G+G+AT  L  QA
Sbjct: 1   PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSS-VFMFLFSILMGLGTATTALVAQA 59

Query: 95  YGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILL-LLGESSAIASAAAIFVFGLI 153
            GA  Y  LG   Q+S ++    G+P++++  F    LL L+G    +A  A  ++  LI
Sbjct: 60  VGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILI 119

Query: 154 PQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIF-KLG-WGLLGASLVL 211
             I AY +NF ++   + Q       YI+    V++++L+++ IF K G  G++GA+L  
Sbjct: 120 LGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALAT 179

Query: 212 SLSW 215
            +S+
Sbjct: 180 VISY 183

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 96.5 bits (241), Expect = 2e-25
 Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 35  PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQA 94
           P IL  +L +L ++   +F GHLG + LAAVS+ N+ I    +  +LG+ +A  TL GQA
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANS-IASLIFMFLLGLSTALTTLVGQA 59

Query: 95  YGAQKYDMLGVYLQRSAVILTATGIPLMVIYI-FSKQILLLLGESSAIASAAAIFVFGLI 153
            GA  +   GV L++  ++     +P+ ++ I F + IL L  +   +   A+ ++  L 
Sbjct: 60  LGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILA 119

Query: 154 PQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWV 195
             I   ++ F +    +      P  YI+  +L++++ L+++
Sbjct: 120 LGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 83.4 bits (207), Expect = 7e-19
 Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 4/197 (2%)

Query: 16  QRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVF 75
           + ++      LK L +LA P IL  +L  L  +      GHLG   LAAV L N  I   
Sbjct: 6   ELLEGPFKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANP-IFFL 64

Query: 76  AYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLL 134
              + +G+G+ T  L  QA GA         L +  ++    G+ L ++   F++ +L L
Sbjct: 65  IIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRL 124

Query: 135 LGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSW 194
           LG  + +   AA ++  ++       ++F +  + +         YI     +++++L++
Sbjct: 125 LGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNY 184

Query: 195 VAIFKLG--WGLLGASL 209
           + IF L    G+ GA+L
Sbjct: 185 LLIFGLFGGLGVAGAAL 201

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 5/194 (2%)

Query: 25  ELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 84
           EL++L RLA P ++  +    +     +  G LG  +LAAV+LG + +    +   +G+ 
Sbjct: 1   ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALG-SSLWFPVFTFGMGLL 59

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASA 144
            A   L  QA+GA     +   +++   +     +PLM++   +  IL L+G+   +A+ 
Sbjct: 60  LAVTPLVAQAHGAGDRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAI 119

Query: 145 AAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIF-KLGW- 202
           A  ++  L   I    +   ++    A     P+  I+   LV+++ L++V IF K G  
Sbjct: 120 ARGYLLALAWGIPPALLFQVLRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFGKFGLP 179

Query: 203 --GLLGASLVLSLS 214
             G  GA L  ++ 
Sbjct: 180 ALGGAGAGLATAIV 193

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 67.9 bits (167), Expect = 2e-13
 Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 3/203 (1%)

Query: 6   VKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAV 65
            ++L      + ++      LK + ++  P+    +  NL       F   LG   LAA 
Sbjct: 207 FRKLKIRFRLKDLRPFPKKLLKKILKIGLPSAGEELSYNLSQTVITAFIARLGTAALAAR 266

Query: 66  SLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI- 124
           +  +  I +F +   L +G AT+ + G   GA  +D     + +S  I     + + ++ 
Sbjct: 267 TYASN-ISMFVFLFSLAIGQATQIIVGHLVGAGDFDEAYKRVLKSLKIGLLVSLAVALLL 325

Query: 125 YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAA 184
            +F + IL L  +   I +     +   I      A N  +    +A         I   
Sbjct: 326 ALFREPILGLFTDDPEIIALGKTLLLISILLEPGRAFNIVLIGSLRAAGDARFPVLIGII 385

Query: 185 TL-VVHVLLSWVAIFKLGWGLLG 206
           ++  + V L+++    LG GLLG
Sbjct: 386 SMWGISVPLAYLLGIVLGLGLLG 408

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 66.4 bits (163), Expect = 6e-13
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 6/188 (3%)

Query: 27  KSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSA 86
           + ++ LA P IL  +L  LV +      G LG   +AAV L    + +    L + +G+ 
Sbjct: 1   RRIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLATQVLWLL-LVLNMALGTG 59

Query: 87  TETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAA 145
           T  L  Q+YGA  Y+     L +S ++     +PL ++  +F++ +L LLG    + + A
Sbjct: 60  TVALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEVIALA 119

Query: 146 AIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKL----G 201
             ++  ++  I  + ++       +         YI     V++++L +V IF L    G
Sbjct: 120 LTYLRIVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVNVLNIVLDYVLIFGLWGFPG 179

Query: 202 WGLLGASL 209
            G+ GA+L
Sbjct: 180 LGVAGAAL 187

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 64.1 bits (157), Expect = 4e-12
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 13/190 (6%)

Query: 27  KSLFRLAAPAILVYMLNNLVAMSTQIFCGHL-GNLELAAVSLGNTGIQ-VFAYGLMLGMG 84
           K   + A PAI+  ++N L  +   IF GH  G L LAAV+L    I  + A GLM+G+G
Sbjct: 4   KLFLKFALPAIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLMIGVG 63

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIAS 143
            A  +L  +  GA   +        + ++    G+ L ++  +F   +L LLG S  +  
Sbjct: 64  GA--SLISRRLGAGDREKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASGELLP 121

Query: 144 AA----AIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFK 199
            A     I + G    I +  +N  +    +A+     +        V++++L  + IF 
Sbjct: 122 YAVDYLRIILLGAPFTILSSVLNNLL----RAEGKPKLAMLGMLIGAVLNIILDPLFIFV 177

Query: 200 LGWGLLGASL 209
           LG G+ GA+L
Sbjct: 178 LGLGIAGAAL 187

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 2/214 (0%)

Query: 3   LTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLEL 62
               K+     F +++ K     LK + RL  P  L  +  +L  +   +F   LG + L
Sbjct: 217 YLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVAL 276

Query: 63  AAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLM 122
           AA  +       F +    G+  A   L GQ  GA  Y       + +  +     + + 
Sbjct: 277 AAYGIALRIAS-FIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIA 335

Query: 123 -VIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYI 181
            ++ +F + I+ L      + + A I +           + F +  + +          I
Sbjct: 336 LLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFII 395

Query: 182 SAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
           S  +     L     +     GL G  +   LS 
Sbjct: 396 SLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSL 429

Length = 455

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 3/195 (1%)

Query: 23  WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLG 82
              LK + ++  P+ L   L ++  +         G +  AA  + N  I  FA+     
Sbjct: 221 KEILKEILKIGLPSALQQSLVSISFLIINSIVNSYGVVASAAYGIANK-INSFAFLPPSA 279

Query: 83  MGSATETLCGQAYGAQKYD-MLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAI 141
           +G A  T   Q  GA K +           + L    I +++++ F+ Q+L L      +
Sbjct: 280 IGQAVSTFVAQNIGAGKIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSDPEV 339

Query: 142 ASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYIS-AATLVVHVLLSWVAIFKL 200
               A ++         + + F    L +          IS     +V + L+++     
Sbjct: 340 IEIGAEYLRIYSIDYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVRIPLAYLLSRLT 399

Query: 201 GWGLLGASLVLSLSW 215
           G GL G  L + +S 
Sbjct: 400 GLGLFGIWLAMPISN 414

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 9/189 (4%)

Query: 26  LKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMG 84
           LK+L   A P +L  +L  L  +   +  G  LG   LAAVS G+  I +    + +G+ 
Sbjct: 2   LKTLLLFALPLLLSNLLQQLYNLVDLLIVGQFLGVAALAAVSNGSPIIFLLT-AIGMGLS 60

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIAS 143
                L  Q  GA+  +     +    V+    GI L ++  +F+  IL L+   + I  
Sbjct: 61  MGGTILISQYIGAKDEEKAKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEILE 120

Query: 144 AAAIFV---FGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKL 200
            A  ++   F  IP IF Y        + +         Y      V++++L  + I   
Sbjct: 121 LAVSYLRICFLGIPFIFGYNA---YSAILRGLGDSKTPLYFVIIACVLNIILDLLFIAVF 177

Query: 201 GWGLLGASL 209
             G+ GA+L
Sbjct: 178 HMGVAGAAL 186

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 26  LKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFA-YGLMLGMG 84
            + + ++A P +L  +   ++  + + F G L  + LAA      G+  FA   L  G+ 
Sbjct: 4   YREILKIALPLVLSMLSQTVMGFTDRAFLGRLSEVALAASGPA--GVLYFAILMLFFGLS 61

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIF-SKQILLLLGESSAIAS 143
           S  +    Q  GA +Y  +G  L +           L ++    +  + LLLG S  + +
Sbjct: 62  SGVQVFVAQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPEVQA 121

Query: 144 AAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIF-KLG- 201
               +    I       +   ++               +   +VV+++L +  IF KLG 
Sbjct: 122 LEVEYFRIRILGAPFSLLGAALRAFFSGIGRTRVVMVANLVMVVVNIVLDYALIFGKLGF 181

Query: 202 --WGLLGASLVLSLSW 215
              G+ GA++   ++ 
Sbjct: 182 PAMGIAGAAIATVIAE 197

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 51.3 bits (124), Expect = 9e-08
 Identities = 30/188 (15%), Positives = 75/188 (39%), Gaps = 6/188 (3%)

Query: 27  KSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSA 86
            SLF LA P  +  +L  L+            +  +AAV + N  + +    +   + + 
Sbjct: 3   LSLFALAWPIFIELLLQMLLGTIDTFMLSRYSDNAVAAVGVANQILFLLIL-IFSFISTG 61

Query: 87  TETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAA 145
           T  L  Q  GA+           + +     G+   ++   F  ++L L+G    + +  
Sbjct: 62  TSILIAQYLGAKDKKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLALG 121

Query: 146 AIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLG---- 201
           + ++  +   +F  A++  +  + ++        Y+S    +++++ +++ IF       
Sbjct: 122 STYLRIVGGSLFLQALSLTLSAILRSHGRTKIPMYVSLIMNILNIVGNYLLIFGWFGLPK 181

Query: 202 WGLLGASL 209
            G+ G ++
Sbjct: 182 LGVAGVAI 189

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 24/202 (11%)

Query: 27  KSLFRLAAP---AILVYMLNNLVAMSTQIFCGHLGNLELAAVSL-GNTGIQVFAYGLMLG 82
           K +  +A P    +++  L  LV +    F G LG+  LA VSL GN    V A   +L 
Sbjct: 11  KHIISMALPIAIGMIIQTLYFLVDL---YFVGQLGDAALAGVSLAGNVMFFVMALTQVLN 67

Query: 83  MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAI 141
           +G+A   L   A G +          +S ++    G+ ++V+ Y+F +  L  L   +A 
Sbjct: 68  VGTA--ALVSHAVGRKDQGEANAVFNQSLLLAAVLGLVVLVLGYLFGRLYLETLAADAAT 125

Query: 142 ASAAAIFVFGLIPQIFAYAVNFPIQKLPQA---QSIISPSAYISAATLVVHVLLSWVAIF 198
             AA  +++  IP   + A+ F +  L  A     I+ P   I    ++++++L+ + I 
Sbjct: 126 VEAATTYLYWFIP---SLALQFILTVLGAALRGTGIVKPFMVIQILAVLLNIILAPILIT 182

Query: 199 KLGW------GLLGASLVLSLS 214
             GW      G+ GA L  S+S
Sbjct: 183 --GWGTGRALGVAGAGLASSIS 202

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 443

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 5/187 (2%)

Query: 33  AAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCG 92
           AAP +L  +L  L  +    F G L    LAAV L    +      L +G+   T  L  
Sbjct: 1   AAPLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGL-AFPLIALLIALGVGLSVGTSALIS 59

Query: 93  QAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFG 151
           QA GA   +     L +S V+    G+ L  +   FS  IL LLG    +   AA ++  
Sbjct: 60  QAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEVIELAATYLTI 119

Query: 152 LIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLG---WGLLGAS 208
           LI  +    +   +  + Q +     +  IS  + ++++LL  + IF LG    G+ GA+
Sbjct: 120 LILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAA 179

Query: 209 LVLSLSW 215
           L   +S+
Sbjct: 180 LATVISY 186

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 8/206 (3%)

Query: 5   RVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAA 64
           ++K+LT      ++ KA     K   +L  P      L N+  ++       +G L L  
Sbjct: 206 KIKKLTFKLSNTKVLKANIRPYKFTIKLGLPLGGEEFLWNIGNLAVIRILNRIGELALGI 265

Query: 65  VSLGNTGIQVFAYGLMLGMGSATETLCGQAYGA----QKYDMLGVYLQRSAVILTATGIP 120
            +L   GI+      M G  SA  TL G++ G     +   +  + L    +I  A    
Sbjct: 266 YTL-VFGIENIVLMPMYGYSSAALTLVGESIGKKDLKEALRIGNICLGLGLLIYIAA--- 321

Query: 121 LMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180
            +V   F  +IL L      + + +  ++  +I  +F  ++N       +A        Y
Sbjct: 322 AIVFLAFPYKILSLFTNDPELINYSIPYLIFIIIILFFKSINIVYGFAIRAIGDTKWMLY 381

Query: 181 ISAATLVVHVLLSWVAIFKLGWGLLG 206
                 ++ V ++ + IF    GL G
Sbjct: 382 TQIIGTIIVVSVALLLIFVFKLGLAG 407

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 48/212 (22%), Positives = 77/212 (36%), Gaps = 3/212 (1%)

Query: 6   VKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHL-GNLELAA 64
            K    L F   + K     L+ L R+  P+ +   L +L  +          G   LAA
Sbjct: 198 RKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAA 257

Query: 65  VSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVI-LTATGIPLMV 123
            ++    I   A+   LG+  A   + GQ  GA  +D        + +I L    +  ++
Sbjct: 258 YTVA-FRIASLAFMPALGLAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLL 316

Query: 124 IYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISA 183
           I +F + IL L          A  ++  L        + + +Q   QA      S  +S 
Sbjct: 317 ILLFPEPILSLFTNDPEFLELAVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSL 376

Query: 184 ATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215
            +  V  L     +  LG GL G  L L +S 
Sbjct: 377 LSYWVVRLPLAYVLAYLGLGLYGIWLALVISL 408

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 5/186 (2%)

Query: 27  KSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNL-ELAAVSLGNTGIQVFAYGLM-LGMG 84
           + +  LA PAIL  +   L+ +      GHLG+   L AV+LG T      +    L MG
Sbjct: 3   REILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG 62

Query: 85  SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIAS 143
             T  L  QA GA   +     L R+ ++  A G+ L+++        LLLLG S+A+A+
Sbjct: 63  --TTGLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAAVAA 120

Query: 144 AAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWG 203
            A  ++   I    A  +N+      +          +     VV+++L  + +F LGWG
Sbjct: 121 LARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWG 180

Query: 204 LLGASL 209
           + GA+L
Sbjct: 181 VAGAAL 186

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 26  LKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGS 85
           L++L +LA P I+  +L     ++   + G LG   +AA S+    I +F   L  G+  
Sbjct: 10  LRTLLKLAWPIIVSNLLQVAYNLADTFWLGRLGADAVAAPSISWPLIFLF-ISLGGGLTV 68

Query: 86  ATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILL-LLGESSAIAS 143
           A   L  Q  GA  YD       ++   +    + L V+ YI S+ +LL L+G    +  
Sbjct: 69  AGTALVAQYTGAGDYDKANKVAGQTFSFVIILSLILAVLGYILSRPLLLLLIGAPEEVYP 128

Query: 144 AAAIF---VFGLIPQIFAYAV 161
            A  +   +F  +P +F + V
Sbjct: 129 LALAYLRIIFLGLPFMFIFFV 149

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 17/199 (8%)

Query: 26  LKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGS 85
           +K L R+  PA L  +L +L  +         G   LAA  +G   I+  A+    G   
Sbjct: 225 IKKLLRIGLPAGLEQLLRSLGFLVLLAIVASYGTAALAAYQIGLR-IESLAFMPGFGFSM 283

Query: 86  ATETLCGQAYGAQKYDMLGVYLQR----SAVILTATGIPLMVIYIFSKQILLLLGESSAI 141
           A  TL GQ  GA   D    Y +R      + +   G+   +++IF+  +  L      +
Sbjct: 284 AASTLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGL---LLFIFAPPLASLFTPDPEV 340

Query: 142 ASAAAIFV----FGLIPQIFAYAVNFPIQKLPQAQSIISPSAYIS-AATLVVHVLLSWVA 196
                +++            ++ ++  +    +      P   I+  +  +V + L+++ 
Sbjct: 341 IELGVLYLRIVALSQPFLAISFVLSGAL----RGAGDTRPPLIINLISMWLVRLPLAYLL 396

Query: 197 IFKLGWGLLGASLVLSLSW 215
            F LG GL G  L + +  
Sbjct: 397 GFVLGLGLTGIWLAMFVDT 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 15/202 (7%)

Query: 23  WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLG 82
              L+ + RL  P+ L + L+        +  G LG  ELAA ++  + I   A+  M+G
Sbjct: 227 RELLRRILRLGLPSGLQFFLDVGAFTVFFLLIGRLGTTELAATNIVFS-INSLAFLPMIG 285

Query: 83  MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLL----GES 138
           +G A  +L GQA GA + D+     +R   +  A  + L ++++   ++LL +     + 
Sbjct: 286 LGIAVSSLVGQALGAGRPDLAMRVTRRGLKLALAYMLLLGILFLLFPELLLSIFTPGADF 345

Query: 139 SAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIIS-----PSAYISAATLVVHVLLS 193
           + IA  A   +  +   I   A+         A ++                  +++L  
Sbjct: 346 ALIAELAVPLLRFVAAYILFDALALVF-----AGALRGAGDTRFVMLAELIVAWLYLLPP 400

Query: 194 WVAIFKLGWGLLGASLVLSLSW 215
              +  LG GL GA  V ++  
Sbjct: 401 AYLLVVLGAGLAGAWTVETVYV 422

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 27  KSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSA 86
           +++F LA P +L  ++ +L A+    F   LG L +A V L  + +    Y + +G+  A
Sbjct: 14  RAIFLLAIPMVLEMVMESLFAVVDLYFVSRLGALAIATVGLTES-VLTIVYSIAIGLSMA 72

Query: 87  TETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIAS 143
              L  +  G +  +  G    ++ ++  A  + L ++ Y F++ IL L+G S A+ +
Sbjct: 73  ATALVARRIGEKDPEGAGFAAVQAILLGVALSLILSILGYFFAEDILSLMGASPAVIA 130

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 39/191 (20%), Positives = 83/191 (43%), Gaps = 3/191 (1%)

Query: 26  LKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGS 85
           LK +FR+  P+ +      L            G + +AA  +GN  I    +    G+  
Sbjct: 236 LKKIFRIGLPSSIEQSARALGFTVMTALVAGFGTVVVAAYGIGNRIIS-LVFLPAFGLAR 294

Query: 86  ATETLCGQAYGAQKYDMLGVYLQRSAVILTA-TGIPLMVIYIFSKQILLLLGESSAIASA 144
           AT T+ GQ  GA + D     ++++A+++     I  ++ ++F++ I+ +      +   
Sbjct: 295 ATSTMVGQNLGAGQIDRAEEIVKKAALLIFLILVIGGVLAFLFAEPIVRVFINDPEVIKE 354

Query: 145 AAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATL-VVHVLLSWVAIFKLGWG 203
            A F+  + P    + +   I    +       +  IS   L V+ + L+++  + LG G
Sbjct: 355 GADFLRIVAPSFPFFGLFQVINGAFRGSGHTLTAMIISILRLWVIRIPLAYLLAYVLGLG 414

Query: 204 LLGASLVLSLS 214
           + G  + +++S
Sbjct: 415 VTGIWIAMAIS 425

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 15/199 (7%)

Query: 26  LKSLFRLAAPAI---LVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQV-FAYGLML 81
           LK+L RLA P +    + M  NL  M    + G LG+  +AAV  G  G  V  AY L L
Sbjct: 4   LKTLLRLALPIMGTSFIQMAYNLTDM---FWVGRLGSDAVAAV--GTAGFFVWLAYALAL 58

Query: 82  GMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLM-VIYIFSKQILLLLG-ESS 139
                 +    Q+ GA+       Y + +  +    GI    ++ +F+K ++       +
Sbjct: 59  LSKIGAQVKVSQSIGAKDEKEARKYARNALQLNLLLGILYGLLLLLFAKPLIGFFNLGDA 118

Query: 140 AIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFK 199
            + S A  ++  +   +    +N     +  A         I+A  LV++++L  + IF 
Sbjct: 119 EVISLAITYLRIVALGLIFSFLNPVFTGIFNALGDSKTPFIINAIGLVLNIILDPLLIFG 178

Query: 200 LG----WGLLGASLVLSLS 214
            G     G+ GA+L   L+
Sbjct: 179 FGPFPALGVAGAALATVLA 197

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 2/136 (1%)

Query: 14  FFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQ 73
            ++ + K  W  LK L +L  P     +L +L      +    LG++ LAA  +    ++
Sbjct: 203 KWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALN-VE 261

Query: 74  VFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYI-FSKQIL 132
              +    G G A   L GQA GA          + +  +    G+ L +I I F + I 
Sbjct: 262 SLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIA 321

Query: 133 LLLGESSAIASAAAIF 148
            L      +   AAI+
Sbjct: 322 RLFTNDPEVLELAAIY 337

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 1/116 (0%)

Query: 12  LSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTG 71
               + +K+     +K + +L  P  L  +L  L++M         G + +AA  +G+  
Sbjct: 216 FLKIRILKRPDRKYIKEILKLGLPVALQSILFALISMILARIIASFGPVAIAAQKVGSQ- 274

Query: 72  IQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIF 127
           I+  ++    G  +A     GQ YGA KYD +    + +  I +A G+   ++  F
Sbjct: 275 IESISWMTAEGFSTALAAFVGQNYGAGKYDRIRKGYKTALKIASAIGLFATLLLFF 330

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 6/189 (3%)

Query: 26  LKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGS 85
           L+ L  ++ PA++  +   L  +   IF   LG   L AVSL    IQ     + +G G 
Sbjct: 7   LRLLLTMSIPAMISMLFQALYNIVDSIFVARLGENALTAVSLA-FPIQNLMIAVAVGTGV 65

Query: 86  ATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFS-KQILLLLGESSAIASA 144
               L  ++ G +             ++   + +  +++ +F  K    L  +   I   
Sbjct: 66  GVNALLSRSLGEKDQKEANKAANNGLLLALLSYLLFLLLGLFGVKPFFRLFTDDPEILEY 125

Query: 145 AAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKL---- 200
              ++   +   F        +K+ Q+               +++++L  + IF L    
Sbjct: 126 GYAYLSWCVIFSFGMFFQILCEKVLQSTGNTITPMIAQLIGAIINIILDPILIFGLFGFP 185

Query: 201 GWGLLGASL 209
             G+ GA++
Sbjct: 186 AMGIAGAAI 194

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 10  TSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMST-QIFCGHLGNLELAAVSLG 68
           + L       K +   +K +  L  P+ L+ + +++V +       G+ G++ +AA  + 
Sbjct: 209 SLLKLSLLRFKLSLKIIKEILALGFPSFLMQLSSSVVTIVLNLTLLGYGGDIGVAAFGI- 267

Query: 69  NTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIF 127
            T I  F +  ++G+    + + G  YGA  YD +   L+ + ++    G+ L +I  +F
Sbjct: 268 VTRILTFLFLPLIGLSQGLQPIIGYNYGAGNYDRVKQALKLALIVALIYGLVLFLILLLF 327

Query: 128 SKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 162
            +QI+ L  +   + + A      L   + A+ + 
Sbjct: 328 PEQIVSLFTDDPELIALA---ARILRIFLLAFPLA 359

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 39/223 (17%)

Query: 6   VKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAV 65
           VK+ T +S   +  K     +K + ++  PA L  ++ +++ +        + NL L  V
Sbjct: 209 VKKDTYVSLSLKNFKFDKKIVKDILKVGIPASLEQLIMSVLMI--------ILNLILVIV 260

Query: 66  SLGNTGIQVFAYGL---------MLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTA 116
           + G  G+ V+  G          ++G+ +A  ++ G AYGA+ Y+ L      S  +   
Sbjct: 261 A-GTDGVAVYTAGWRIVSFAIIPLIGIATAVTSVTGAAYGARNYEKLKTAYNYSIKLGLI 319

Query: 117 TGIPLMV-IYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSII 175
             + + + I+IF+ QI  L   S   A         L P+I A+     +        ++
Sbjct: 320 IELIIAILIFIFAPQIAYLFTYSEESA--------HLAPEIVAFLRIMCLFLPFVPFGMM 371

Query: 176 SPSAY-------ISAA-----TLVVHVLLSWVAIFKLGWGLLG 206
           S S +        S        L+  VL +++    LG GL G
Sbjct: 372 SSSMFQGIGKGLTSLIITILRELIFQVLFAYLFAIVLGLGLFG 414

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 441

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.97
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.97
PRK00187	464	multidrug efflux protein NorA; Provisional	99.97
PRK10189	478	MATE family multidrug exporter; Provisional	99.97
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.96
PRK00187	464	multidrug efflux protein NorA; Provisional	99.96
PRK01766	456	multidrug efflux protein; Reviewed	99.96
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.96
PRK01766	456	multidrug efflux protein; Reviewed	99.95
PRK10189	478	MATE family multidrug exporter; Provisional	99.95
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.95
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.93
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.91
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.91
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.9
PRK15099	416	O-antigen translocase; Provisional	99.9
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.89
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.88
PRK10459	492	colanic acid exporter; Provisional	99.86
COG2244	480	RfbX Membrane protein involved in the export of O-	99.84
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.84
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.79
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.73
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.73
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.69
PRK15099	416	O-antigen translocase; Provisional	99.61
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.32
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.31
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.18
PRK10459	492	colanic acid exporter; Provisional	98.91
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.81
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.79
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.63
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.58
COG2244	480	RfbX Membrane protein involved in the export of O-	98.56
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.52
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.3
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.19
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.88
COG4267	467	Predicted membrane protein [Function unknown]	91.0
COG4267	467	Predicted membrane protein [Function unknown]	89.38

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.97  E-value=1.3e-29  Score=208.24  Aligned_cols=193  Identities=25%  Similarity=0.382  Sum_probs=185.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHH
Q 043801           22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD  101 (215)
Q Consensus        22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~  101 (215)
                      .++..|+++++++|.+++++.+.+++.+|+.++|+++++++|+-++++++.. +...+..+++.+..+.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence            5678999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801          102 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY  180 (215)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  180 (215)
                      ++++..+++.....+++++..++ +.++++++++++.++|+.+.+..|+++..++.|+..+.....+++|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999887765 99999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-hc-cchhHHHHHHhhcC
Q 043801          181 ISAATLVVHVLLSWVAIFK-LG-WGLLGASLVLSLSW  215 (215)
Q Consensus       181 ~~~~~~~~~v~~~~~li~~-~~-~G~~G~~~a~~i~~  215 (215)
                      .++++.++|+++|+++++. ++ ||+.|+++||++++
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~  207 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIAR  207 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHH
Confidence            9999999999999999998 56 99999999999874

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.97  E-value=2.5e-28  Score=200.35  Aligned_cols=192  Identities=21%  Similarity=0.248  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHH
Q 043801           23 WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHL-GNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD  101 (215)
Q Consensus        23 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~  101 (215)
                      +++.|++++.++|.+++++...+.+.+|+.++|++ |++++|+.+++.++.+ +...+..+++.+..+.+||++|++|+|
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATS-FLFMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            46689999999999999999999999999999997 6778999999999999 889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801          102 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY  180 (215)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  180 (215)
                      ++++..++++....+++++..++ ..+.+++.++++.|+|+.+.+.+|+++.+++.|+..+.....+++|+.||+|.+++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            99999999999999999888865 78889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          181 ISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       181 ~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      .++++.++|+++++++++.+++|+.|+++|+.+++
T Consensus       164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~  198 (441)
T PRK10367        164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAE  198 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence            99999999999999999988999999999998864

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.97  E-value=2.6e-28  Score=201.73  Aligned_cols=193  Identities=25%  Similarity=0.298  Sum_probs=182.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      +++++.|++++.+.|.+++++...+...+|+.+++++|++++|+++++.++.+ +...+..+++.+..+.++|++|++|+
T Consensus         4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~-~~~~~~~gl~~~~~~i~aq~~Ga~~~   82 (464)
T PRK00187          4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYS-FVSIFCVGVIAAVGTLVAIRHGAGDI   82 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            35678999999999999999999999999999999999999999999999999 88889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY  180 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  180 (215)
                      |++++..+++..+.++++++..++..+.+++.++++.|+|+.+.+..|+++..++.++..+....++++|+.||++.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  162 (464)
T PRK00187         83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV  162 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999998876655679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHhhc
Q 043801          181 ISAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLS  214 (215)
Q Consensus       181 ~~~~~~~~~v~~~~~li~~~----~~G~~G~~~a~~i~  214 (215)
                      .++++.++|++++|++++..    ++|+.|+++|+.++
T Consensus       163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~  200 (464)
T PRK00187        163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALV  200 (464)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHH
Confidence            99999999999999999752    48999999999875

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.97  E-value=5.8e-28  Score=200.02  Aligned_cols=191  Identities=18%  Similarity=0.246  Sum_probs=181.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHH
Q 043801           24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDML  103 (215)
Q Consensus        24 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~  103 (215)
                      +.+|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++.. +...+..+++.+..+.++|++|++|+|++
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~-~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~  104 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNM-VIMAFFAAIDLGTTVVVAFSLGKRDRRRA  104 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            45999999999999999999999999999999999999999999999998 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801          104 GVYLQRSAVILTATGIPLMVI-YIFSKQILLLLG--ESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY  180 (215)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  180 (215)
                      ++..+++..+.+.++++.+++ +.+++++.+++.  .|+|+.+.+..|+++..++.++..+.....+++|+.||++.+++
T Consensus       105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  184 (478)
T PRK10189        105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL  184 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence            999999999999999988865 888999999995  68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHhhcC
Q 043801          181 ISAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLSW  215 (215)
Q Consensus       181 ~~~~~~~~~v~~~~~li~~~----~~G~~G~~~a~~i~~  215 (215)
                      .+++..++|+++++++++.+    ++|+.|+|+|+.+++
T Consensus       185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~  223 (478)
T PRK10189        185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISR  223 (478)
T ss_pred             HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHH
Confidence            99999999999999999753    799999999998863

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.96  E-value=1.6e-27  Score=196.53  Aligned_cols=193  Identities=21%  Similarity=0.299  Sum_probs=183.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      +++..|++++.+.|.+++++...+++.+|+.++++ .|+++++++++++++.+ +...+..+++.+..+.++|++|++|+
T Consensus         7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~   85 (453)
T PRK09575          7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIG-IILGIGLMVGMGTGSLLSIKRGEGDL   85 (453)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHhcCCCH
Confidence            45678999999999999999999999999999999 59999999999999999 88889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA  179 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  179 (215)
                      |++++..++++.+..+++++..++ +.+++++.++++.|+|..+.+..|+++..++.++..+......++|+.|+++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~  165 (453)
T PRK09575         86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT  165 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            999999999999999999988866 8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          180 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       180 ~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      +.++.+.++|+++++++++.+++|+.|+++|+.+++
T Consensus       166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~  201 (453)
T PRK09575        166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQ  201 (453)
T ss_pred             HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHH
Confidence            999999999999999999988899999999999874

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.96  E-value=4.9e-27  Score=194.11  Aligned_cols=195  Identities=19%  Similarity=0.212  Sum_probs=182.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 043801           20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQK   99 (215)
Q Consensus        20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~   99 (215)
                      +++++.+|++++.++|.+++++.+.....+|..+++++|++++|+++++.++.. +.+.+..+++.+..++++|++|++|
T Consensus       229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~-l~~~~~~gi~~a~~~lvgq~~Ga~~  307 (464)
T PRK00187        229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVS-VAFMVPVGLSYAVTMRVGQHYGAGR  307 (464)
T ss_pred             CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            456788999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC
Q 043801          100 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE--SS---AIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQS  173 (215)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g  173 (215)
                      +|++++..+.+...+.+++++.+++ +++++++.++|.+  |+   |+.+.+..++++.+++.++..++.+..+.+|+.|
T Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G  387 (464)
T PRK00187        308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK  387 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence            9999999999999999999988865 8899999999953  43   6788899999999999999999999999999999


Q ss_pred             CccHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          174 IISPSAYISAATL-VVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       174 ~~~~~~~~~~~~~-~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      |++.+++.++.+. +++++++|++.+.+++|+.|+|+++.+++
T Consensus       388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~  430 (464)
T PRK00187        388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGL  430 (464)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHH
Confidence            9999999999984 99999999999887899999999998763

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.96  E-value=2.2e-26  Score=190.13  Aligned_cols=194  Identities=18%  Similarity=0.257  Sum_probs=181.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      ..++.+|++++.+.|.+++++..++.+.+|+.+++++|++++++++++.++.. +...+..+++.+..|.+||++|++|+
T Consensus         6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~   84 (456)
T PRK01766          6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRR   84 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            34677999999999999999999999999999999999999999999999887 88888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA  179 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  179 (215)
                      |++++..+++..+.+++++++.++ +.+++++.++++.|+|+.+.+..|+++.+++.++..+...+++++|+.||++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  164 (456)
T PRK01766         85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM  164 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            999999999999999999988866 7888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHhhcC
Q 043801          180 YISAATLVVHVLLSWVAIFK----LGWGLLGASLVLSLSW  215 (215)
Q Consensus       180 ~~~~~~~~~~v~~~~~li~~----~~~G~~G~~~a~~i~~  215 (215)
                      +.++++.++|+++++++++.    .++|+.|+++|+.+++
T Consensus       165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~  204 (456)
T PRK01766        165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVY  204 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Confidence            99999999999999999853    2589999999998863

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.96  E-value=2.2e-26  Score=189.21  Aligned_cols=197  Identities=19%  Similarity=0.250  Sum_probs=186.9

Q ss_pred             HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043801           16 QRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAY   95 (215)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~   95 (215)
                      .+..+++++.+|++++.|.|.+++++.......+.+.+++++|++.+|+|+++.++.+ +.+++..+++++.+++++|++
T Consensus       230 ~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~-~~~~~~~gi~~a~~~lvG~~~  308 (455)
T COG0534         230 KKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIAS-FIFMPPFGIAQAVTILVGQNL  308 (455)
T ss_pred             hhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence            3445778899999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             chhcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCC
Q 043801           96 GAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSI  174 (215)
Q Consensus        96 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  174 (215)
                      |++|+|++++..+.+..++..++...+++ +++++++.++|.+|+|+.+.+..++++.++..++.+.+....+.+||.||
T Consensus       309 Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~  388 (455)
T COG0534         309 GAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGD  388 (455)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998866 99999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHH-HHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          175 ISPSAYISAAT-LVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       175 ~~~~~~~~~~~-~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      +|.++..++.+ +.+.+++.+++.+.+ +|..|+|++..++
T Consensus       389 ~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~  428 (455)
T COG0534         389 AKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLS  428 (455)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHH
Confidence            99999999996 688899999999854 9999999998765

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.95  E-value=2e-26  Score=190.45  Aligned_cols=195  Identities=16%  Similarity=0.181  Sum_probs=183.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 043801           20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQK   99 (215)
Q Consensus        20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~   99 (215)
                      +++++.+|++++.++|.++++..+.....++..+++++|++++|+++++.++.+ +...+..+++.+..+.++|++|++|
T Consensus       232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~-~~~~~~~gl~~a~~~~v~~~~Ga~~  310 (456)
T PRK01766        232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSS-LLFMLPLSLAMALTIRVGFELGAGR  310 (456)
T ss_pred             CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            356788999999999999999999999999999999999999999999999999 8899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHH
Q 043801          100 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPS  178 (215)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  178 (215)
                      ++++++..+.+..++..++++.+.+ +.+++++.++|..|+|+.+.+..++++..+..++..++....+.+|+.||++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~  390 (456)
T PRK01766        311 TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI  390 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence            9999999999999999999998865 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          179 AYISAATL-VVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       179 ~~~~~~~~-~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      ++.++.+. ++++++.+++.+..++|+.|+|+++.+++
T Consensus       391 ~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~  428 (456)
T PRK01766        391 FFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGL  428 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHH
Confidence            99999975 78999999998877899999999998763

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.95  E-value=1e-25  Score=186.64  Aligned_cols=193  Identities=13%  Similarity=0.135  Sum_probs=182.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      .+++.+|++++.|.|.++++....+...+.+.+++++|++++|+++++.++.+ +.+.+..+++++.+++++|++|++|.
T Consensus       253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~-~~~~~~~gi~~A~~~lvg~~~Ga~~~  331 (478)
T PRK10189        253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAA-LINLPGNALGSASTIITGTRLGKGQI  331 (478)
T ss_pred             CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            46788999999999999999999999999888999999999999999999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA  179 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  179 (215)
                      |++++..+.+...+.+.++..+++ +++++++.++|.+|+|+.+.+..++++.++..++.+.+.+..+.+||.||++.++
T Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~  411 (478)
T PRK10189        332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM  411 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence            999999999999999999888866 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          180 YISAAT-LVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       180 ~~~~~~-~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      ++++.+ +++.+++.+++...+++|..|+|++..++
T Consensus       412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~  447 (478)
T PRK10189        412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLD  447 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            999987 68899999998877789999999998765

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.95  E-value=1.7e-25  Score=184.53  Aligned_cols=192  Identities=15%  Similarity=0.244  Sum_probs=179.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 043801           20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGN-LELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQ   98 (215)
Q Consensus        20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~-~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~   98 (215)
                      +++++..|++++.|.|..+++....+...+.+.+++++|+ +++|+++++.++.+ +...+..+++.+..|.+||++|++
T Consensus       227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~-~~~~~~~gi~~a~~~lvg~~~Ga~  305 (453)
T PRK09575        227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMV-LYYLVAEGIAEGMQPPVSYYFGAR  305 (453)
T ss_pred             CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCC
Confidence            4567889999999999999999999999999999999885 58999999999999 999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCcc
Q 043801           99 KYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE-SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIIS  176 (215)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  176 (215)
                      |+|++++..+.+.++++..+++.+++ +.+++++.++|.. |+|+.+.+..++++.+++.++..+..+..+++|+.||++
T Consensus       306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~  385 (453)
T PRK09575        306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG  385 (453)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            99999999999999999999998866 8899999999985 788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          177 PSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      .++..++...++++++.+++.+  .+|+.|+|+|+.++
T Consensus       386 ~~~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~  421 (453)
T PRK09575        386 KALFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLS  421 (453)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHH
Confidence            9999999888889999998876  47999999999875

>TIGR01695 mviN integral membrane protein MviN

Probab=99.93  E-value=4.2e-24  Score=178.55  Aligned_cols=192  Identities=18%  Similarity=0.140  Sum_probs=175.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchhc
Q 043801           21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAY-GLMLGMGSATETLCGQAYGAQK   99 (215)
Q Consensus        21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~~~~~s~~~g~~~   99 (215)
                      .+++..|++++.+.|..++++...+...+|+.+.+..|++++++|+.+.++.+ +.. .+..+++++..|.+++++|++|
T Consensus       217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~-~~~~~~~~~i~~~~~P~~s~~~~~~~  295 (502)
T TIGR01695       217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQ-LPLGIFGISLSTVLLPKLSRHASEGN  295 (502)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            35677999999999999999999999999998866699999999999999998 554 5678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCC
Q 043801          100 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSI  174 (215)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  174 (215)
                      +|++++..++..+....+++|.+++ ..+++++.+++.+    |+|....+..++++++++.++.+++....+.+++.||
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~  375 (502)
T TIGR01695       296 WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKD  375 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccC
Confidence            9999999999999999999999976 8999999999865    5567888999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          175 ISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      +|.+++.++...++++++++++++  .+|..|+|+|+.+++
T Consensus       376 ~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~  414 (502)
T TIGR01695       376 TRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAAS  414 (502)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHH
Confidence            999999999999999999999988  679999999998763

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.91  E-value=2.9e-22  Score=159.76  Aligned_cols=179  Identities=35%  Similarity=0.629  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHH
Q 043801           35 PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVIL  114 (215)
Q Consensus        35 p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~  114 (215)
                      |.++++++..+...+|+.+++++|++++++++++.++.. +...+..+++++..|.++++.|++|+|++++..++...+.
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999888 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHH
Q 043801          115 TATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLS  193 (215)
Q Consensus       115 ~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~  193 (215)
                      .+++++.+++ +.+++++.++++.|++..+.+..++++++++.++........+++|+.||++...+.++.+.+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~  159 (342)
T TIGR00797        80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN  159 (342)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence            9999998866 889999999998788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-Hhc-cchhHHHHHHhhc
Q 043801          194 WVAIF-KLG-WGLLGASLVLSLS  214 (215)
Q Consensus       194 ~~li~-~~~-~G~~G~~~a~~i~  214 (215)
                      +++++ .++ +|+.|+++++.++
T Consensus       160 ~~li~~~~g~~g~~g~~~~~~~~  182 (342)
T TIGR00797       160 YILIFGKFGFLGIVGAALATVIS  182 (342)
T ss_pred             HHHHhcCccccccHHHHHHHHHH
Confidence            99987 667 8899999998876

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.91  E-value=8e-22  Score=162.02  Aligned_cols=184  Identities=17%  Similarity=0.158  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHH
Q 043801           24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDML  103 (215)
Q Consensus        24 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~  103 (215)
                      +..|++++.+.|.++++........+...+++++|++++|+|+++.++.+ +.+.+..+++++.+|.++|++|++|.|++
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~-~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a  307 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLT-FTAYALDGFAYAVEAHSGQAYGARDGSQL  307 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence            47899999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC---CccHHH
Q 043801          104 GVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQS---IISPSA  179 (215)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~  179 (215)
                      ++..+.+.+.....+.+.+++ +.+++++.++|.+|+|+.+.+..++++.++..+.........+++++.+   |+|.++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~  387 (441)
T PRK10367        308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM  387 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            999999999999999998866 8899999999999999999999999998876443334444444455544   599999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          180 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       180 ~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      ..++++..+    .++..+  ++|..|+|++..++
T Consensus       388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~  416 (441)
T PRK10367        388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVF  416 (441)
T ss_pred             HHHHHHHHH----HHHHHH--HcCchHHHHHHHHH
Confidence            998887432    222233  57999999998765

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.90  E-value=8.5e-22  Score=164.12  Aligned_cols=190  Identities=15%  Similarity=0.158  Sum_probs=164.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC------hH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 043801           21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LG------NL---ELAAV-SLGNTGIQVFAYGLMLGMGSATET   89 (215)
Q Consensus        21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g------~~---~~a~~-~~~~~i~~~~~~~~~~~~~~~~~~   89 (215)
                      .+++.+|++++++.|.+++++...+.+.+|+.++++ ++      .+   .++.| +++.++.+ +...+..+++++..|
T Consensus       219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~-~~~~~~~~l~~~~~p  297 (488)
T TIGR02900       219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLT-FPAVITSSLSTALVP  297 (488)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHH-hHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999987 32      12   23333 35667777 777888999999999


Q ss_pred             HHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 043801           90 LCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKL  168 (215)
Q Consensus        90 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  168 (215)
                      .++++.|++|+|+.++..++..++...+++|.+++ ..+++++++++.++++    +..+++++++..++..+.....+.
T Consensus       298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~  373 (488)
T TIGR02900       298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSI  373 (488)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998866 8999999999876543    567899999999999999999999


Q ss_pred             HhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          169 PQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       169 l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      +++.||+|.+++.++...+++++++++++....+|+.|+|+|+.+++
T Consensus       374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~  420 (488)
T TIGR02900       374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITS  420 (488)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            99999999999999999999999999988222789999999998763

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.90  E-value=4.6e-21  Score=156.78  Aligned_cols=190  Identities=7%  Similarity=-0.074  Sum_probs=168.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 043801           19 KKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGA   97 (215)
Q Consensus        19 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~   97 (215)
                      .+.+++.+|+++++|.|..++++...+.+.+|+.++++ +|++++|+|+.+.++.+.+...+..+++++..|.++++   
T Consensus       207 ~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---  283 (416)
T PRK15099        207 PSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---  283 (416)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            34578889999999999999999999999999999974 99999999999999977355889999999999999995   


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCcc
Q 043801           98 QKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIIS  176 (215)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  176 (215)
                      +|+|+.++..++.......++++.+++ +++++++++++.+|+  ++++.+++++++++..+...+........+.++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~  361 (416)
T PRK15099        284 TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLR  361 (416)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999988888866 799999999998876  56678899999999888888877777777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          177 PSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      .....++...++++++++++++  .+|..|+++++.++|
T Consensus       362 ~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~  398 (416)
T PRK15099        362 FYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATY  398 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHH
Confidence            8888888888999999999999  689999999998875

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.89  E-value=5.2e-21  Score=157.53  Aligned_cols=192  Identities=17%  Similarity=0.172  Sum_probs=178.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      ...+..|++++...|..++.....+...+|+.+.+.+++.++++++.++++.++....+..+++++..|..|++..++|.
T Consensus       192 ~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~  271 (451)
T PF03023_consen  192 WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW  271 (451)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            34566999999999999999999999999999999999999999999999999666688889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCc
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSII  175 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~  175 (215)
                      ++.++..+++.+....+.+|++++ ..+++++.+++.+    +.|..+.....+++++++.++.+++..+...+.+.||+
T Consensus       272 ~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~  351 (451)
T PF03023_consen  272 EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDT  351 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCc
Confidence            999999999999999999999976 8999999998642    55667778899999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          176 SPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      |.+++.++.+.++|++++.++.+  .+|..|.++|+.++
T Consensus       352 ~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~  388 (451)
T PF03023_consen  352 KTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLS  388 (451)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            99999999999999999999999  78999999998875

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.88  E-value=2e-23  Score=149.29  Aligned_cols=160  Identities=23%  Similarity=0.373  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHH
Q 043801           35 PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVIL  114 (215)
Q Consensus        35 p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~  114 (215)
                      |.+++++...+.+.+|+.+++++|++++++++++.++.+ +...+..+++.+..+.+||++|++|+|++++..+++..+.
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~-~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~   79 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFS-ILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhhcccccccccceeecccccccccccccccccccccc
Confidence            889999999999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHH-HHHHHH
Q 043801          115 TATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATL-VVHVLL  192 (215)
Q Consensus       115 ~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~v~~  192 (215)
                      ..++++..+. ..+++++.++++.|+|+.+.+..++++..++.++........+++++.||++.+++.++.+. ++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  159 (162)
T PF01554_consen   80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL  159 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence            9999999976 89999999999999999999999999999999999999999999999999999999999987 999999


Q ss_pred             HHH
Q 043801          193 SWV  195 (215)
Q Consensus       193 ~~~  195 (215)
                      +|+
T Consensus       160 ~yl  162 (162)
T PF01554_consen  160 AYL  162 (162)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            885

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK10459 colanic acid exporter; Provisional

Probab=99.86  E-value=1.3e-19  Score=151.19  Aligned_cols=187  Identities=17%  Similarity=0.088  Sum_probs=167.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      +++..|++++++.|...+++...+...+|+.+++. .|++++|.|+.+.++.+.....+...++....|..++.  ++|+
T Consensus       202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~  279 (492)
T PRK10459        202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT  279 (492)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence            45678999999999999999999999999999999 89999999999999988345556666788999999986  5788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA  179 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  179 (215)
                      ++.++..++..+....+++|+.++ ..++++++.++.+++  +..+...++++++...+..........+++.||+|..+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~  357 (492)
T PRK10459        280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF  357 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence            899999999999999999998876 899999999987766  67788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          180 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       180 ~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      +.+++..++.++..+.+.+  .+|..|+++|+.++
T Consensus       358 ~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~  390 (492)
T PRK10459        358 KWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLV  390 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHH
Confidence            9999998888888888777  67999999999875

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.84  E-value=2.7e-19  Score=148.93  Aligned_cols=185  Identities=21%  Similarity=0.222  Sum_probs=174.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      .++.+|++++.+.|..++.+...+.+.+|+.+++. +|++++|.|+.++++.. ....+..+++.+..|..++..+++|+
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~-~~~~~~~~l~~~l~P~~s~~~~~~~~  286 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVS-LLLIVASALNRVLFPALSRAYAEGDR  286 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            47889999999999999999999999999999999 89999999999999998 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA  179 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  179 (215)
                      ++.++..++..+.....++|..++ ..++++++.++.+++  +..+...++++++..++..........+++.|+++...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            999999999999999999999976 899999999988776  44488899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 043801          180 YISAATLVVHVLLSWVAIFKLGWGLLGASLVL  211 (215)
Q Consensus       180 ~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~  211 (215)
                      +.+.++.++++.+++++++  .+|..|++.++
T Consensus       365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~  394 (480)
T COG2244         365 LISLISALLNLILNLLLIP--RFGLIGAAIAT  394 (480)
T ss_pred             HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH
Confidence            9999999999999999999  77888888877

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.84  E-value=1.2e-18  Score=142.83  Aligned_cols=191  Identities=15%  Similarity=0.122  Sum_probs=175.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHH
Q 043801           22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD  101 (215)
Q Consensus        22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~  101 (215)
                      +....|++.+...|..++..+.++...+|+.+.+.+.+.+++.++++++++++....+..++++...|..|++.+++|.+
T Consensus       227 ~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~  306 (518)
T COG0728         227 KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP  306 (518)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence            33679999999999999999999999999999999999999999999999996677999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCcc
Q 043801          102 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIIS  176 (215)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  176 (215)
                      +.++..+++.+.+.++++|++.+ ..+++|+.+++.+    +++......+.+..+..+.++..+..++...+.+.+|+|
T Consensus       307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k  386 (518)
T COG0728         307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK  386 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence            99999999999999999999976 9999999998632    344466788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          177 PSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      .|+++++++.++|+.+++.+.+  .+|..|.++++.++
T Consensus       387 tP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a  422 (518)
T COG0728         387 TPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLA  422 (518)
T ss_pred             cChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHH
Confidence            9999999999999999988887  56777888877654

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.79  E-value=1.2e-17  Score=137.28  Aligned_cols=193  Identities=47%  Similarity=0.790  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHH
Q 043801           23 WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDM  102 (215)
Q Consensus        23 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~  102 (215)
                      +++.|++.+++.|..+..+.+.....++..++||+|+..+|+.+++....+...+.+..+...+..+..+|++|.++++.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~  103 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence            78899999999999999999999999999999999999999999999988866788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHH
Q 043801          103 LGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYIS  182 (215)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  182 (215)
                      .....+++.......+++...++.+.+++...+++|+++...+..|.+...+..+..........++|+.++.....++.
T Consensus       104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~  183 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG  183 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          183 AATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       183 ~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      ....++++++++++++.+++|..|++++..+++
T Consensus       184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~  216 (473)
T KOG1347|consen  184 LVALVLHILLTWLLVSKLGLGIKGAALALVASY  216 (473)
T ss_pred             HHHHHHHHHHHHHhhhcccCCCccchHHHHHHH
Confidence            999999999999999999999999999988764

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.73  E-value=2.6e-16  Score=125.50  Aligned_cols=133  Identities=24%  Similarity=0.335  Sum_probs=123.9

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 043801           19 KKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQ   98 (215)
Q Consensus        19 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~   98 (215)
                      .+++++.+|++++++.|.+++++...+...+|+.+++.+|++++++|+++.++.+ +...+..+++.+..|.++++++++
T Consensus       208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~  286 (342)
T TIGR00797       208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVES-LLFMPAFGFGIAVSILVGQALGAG  286 (342)
T ss_pred             cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4456788999999999999999999999999999998899999999999999999 889999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHH
Q 043801           99 KYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGL  152 (215)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~  152 (215)
                      |.|++++..+++.+....++++...+ +++++++.++|.+|+|+.+.+..++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999998866 8999999999999999888888887653

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.73  E-value=1.9e-15  Score=126.01  Aligned_cols=180  Identities=16%  Similarity=0.167  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhcHHHHHHHH
Q 043801           30 FRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGL-MLGMGSATETLCGQAYGAQKYDMLGVYL  107 (215)
Q Consensus        30 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~  107 (215)
                      .|.+.|.+++++...+...+|+.++++ +|+++.|+++.+..+.+ +...+ ..|++++..+.++|+.|++|+|+.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~-~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~   80 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYF-LFITLTTGGLPVAISKFVAEASAKNDRKNIKKIL   80 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHH-HHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence            467899999999999999999999999 89999999999999888 55554 4589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHH
Q 043801          108 QRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATL  186 (215)
Q Consensus       108 ~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  186 (215)
                      +.++.+....+++..++ +++++++.+.+.+|++.    ..++++.++..++..+....+..+|+.+|.+.....+.++.
T Consensus        81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~  156 (488)
T TIGR02900        81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQ  156 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHH
Confidence            99999999999888865 78888888877666543    34677888889999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH-----hccchhHHHHHHhhc
Q 043801          187 VVHVLLSWVAIFK-----LGWGLLGASLVLSLS  214 (215)
Q Consensus       187 ~~~v~~~~~li~~-----~~~G~~G~~~a~~i~  214 (215)
                      ++++.++..++..     .++|+.|+++++.++
T Consensus       157 i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~  189 (488)
T TIGR02900       157 IVRISVVALLISAFLPYGLEYAVAGAYLSLVLG  189 (488)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            8888776665542     245677777776554

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.69  E-value=1.6e-14  Score=120.89  Aligned_cols=181  Identities=12%  Similarity=0.095  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhchhcHHHHH
Q 043801           29 LFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLEL-AAVSLGNTGIQVFAYGL-M-LGMGSATETLCGQAYGAQKYDMLG  104 (215)
Q Consensus        29 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~-a~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~s~~~g~~~~~~~~  104 (215)
                      +.|.+.-.+++++...+.+.+|..++++ +|+++. ++|+++.++.+ ....+ . .+++++..|...++.+++  |+++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~-~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~   78 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPN-FFRRLFAEGAFNSAFVPVFTKAKKKE--KEAR   78 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHhhh--hHHH
Confidence            5678888999999999999999999999 999999 89999999887 44433 3 467888777776654322  6777


Q ss_pred             HHHHHHHHHHHHHHH-HHHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801          105 VYLQRSAVILTATGI-PLMVI-YIFSKQILLLL--GESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY  180 (215)
Q Consensus       105 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  180 (215)
                      +............+. ...++ +++++++.+++  +.|+|..+.+..|++++.++.++..+....++++|+.||.+.+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (502)
T TIGR01695        79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF  158 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence            777676665554443 34444 78899999988  346666788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHH--HHHhhc
Q 043801          181 ISAATLVVHVLLSWVAIFKLGWGLLGAS--LVLSLS  214 (215)
Q Consensus       181 ~~~~~~~~~v~~~~~li~~~~~G~~G~~--~a~~i~  214 (215)
                      .++...++++...+++.+  ++|..|++  +++.++
T Consensus       159 ~~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~  192 (502)
T TIGR01695       159 SPILFNIGVILSLLFFDW--NYGQYSLALAIGVLIG  192 (502)
T ss_pred             HHHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHH
Confidence            999988777765545444  78999988  877664

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=99.61  E-value=8e-14  Score=114.20  Aligned_cols=179  Identities=12%  Similarity=-0.014  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHH
Q 043801           29 LFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYL  107 (215)
Q Consensus        29 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~  107 (215)
                      +.|.+.+...+++...+...+...++++ +|+++.|.++....+...+......+++++....++|+  ++|+|+.++..
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            5677888889999999999998888889 99999999999998888344444778888888889988  68889999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHH
Q 043801          108 QRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATL  186 (215)
Q Consensus       108 ~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  186 (215)
                      +.++...+..++..++. +.+.+++...+.++++ +   ..++.+..+..+.........+.+|+.||++.+...++.+.
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~  156 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS  156 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888865 8888999988877664 2   24555566656666778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          187 VVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       187 ~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      ++|+.+ +++... ..|+.|+++|+.+++
T Consensus       157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~  183 (416)
T PRK15099        157 LIGVAA-YYLCYR-LGGYEGALLGLALVP  183 (416)
T ss_pred             HHHHHH-HHHHHH-HhcchHHHHHHHHHH
Confidence            999887 444442 239999999998863

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.32  E-value=7.1e-10  Score=91.80  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=128.8

Q ss_pred             cChH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 043801           57 LGNL-ELAAVSLGNTGIQVFAYGLM-LGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILL  133 (215)
Q Consensus        57 ~g~~-~~a~~~~~~~i~~~~~~~~~-~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~  133 (215)
                      +|.. ..++|.++.++.+.+...+. .+++.+..|..++.. ++++|+.++..+..........+..+++ +++++++.+
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5654 47899999999993434454 468999999999999 8899999999999988888888887765 899999999


Q ss_pred             HcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccc---hhHHH
Q 043801          134 LLG--ESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWG---LLGAS  208 (215)
Q Consensus       134 l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G---~~G~~  208 (215)
                      ++.  .|+|..+.+.+.+++..+..++..+..+..+++|+.+|...+....+...+..++..+++..  .+|   +.+.+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la  161 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA  161 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence            984  46788899999999999999999999999999999999999999888887765555444444  567   78888


Q ss_pred             HHHhhc
Q 043801          209 LVLSLS  214 (215)
Q Consensus       209 ~a~~i~  214 (215)
                      +|..++
T Consensus       162 ~g~~~g  167 (451)
T PF03023_consen  162 WGVLIG  167 (451)
T ss_pred             HHHHHH
Confidence            887765

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.31  E-value=3.7e-12  Score=105.08  Aligned_cols=190  Identities=17%  Similarity=0.122  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           23 WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGN--LELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        23 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~--~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      .+.++.+++.+.|..+....++-...+-....|.++.  .+++..++..++.. ..++...+++.+...++++.+|++|+
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~-~~~~~~~~~~~a~strv~neLGag~p  321 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGG-WHLMIPGAFSAAVSTRVSNELGAGKP  321 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHcCCCh
Confidence            7889999999999999999999999999999999764  67999999999999 88889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA  179 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  179 (215)
                      +.+|.....+....+..+...+.. +...+.+..+|++|+|+.+......++.+...+.+..+.+.++..++.|.++...
T Consensus       322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga  401 (473)
T KOG1347|consen  322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA  401 (473)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence            999999999998888888888855 8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHhccchhHHHHHHhh
Q 043801          180 YISAAT-LVVHVLLSWVAIFKLGWGLLGASLVLSL  213 (215)
Q Consensus       180 ~~~~~~-~~~~v~~~~~li~~~~~G~~G~~~a~~i  213 (215)
                      ++++.. .++.+++...+-+.+++|..|.|.+...
T Consensus       402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~  436 (473)
T KOG1347|consen  402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILL  436 (473)
T ss_pred             EEeeeeeeEecCcceeEEEEEEecCceEEEeehHH
Confidence            999987 5788888888777678999999988654

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.18  E-value=2.7e-08  Score=82.50  Aligned_cols=188  Identities=12%  Similarity=0.073  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchhcHHH
Q 043801           26 LKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGN-LELAAVSLGNTGIQVFAYGLMLG-MGSATETLCGQAYGAQKYDM  102 (215)
Q Consensus        26 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~-~~~a~~~~~~~i~~~~~~~~~~~-~~~~~~~~~s~~~g~~~~~~  102 (215)
                      -.+++|.+.-....++.+.+...+-..+++. +|. ...++|+++.++-+++--.+..+ ++++..|...++..++++|+
T Consensus         6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~   85 (518)
T COG0728           6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA   85 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence            3456677777777888888888885555555 888 45899999999999555555544 48999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHH-cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHH
Q 043801          103 LGVYLQRSAVILTATGIPLMVI-YIFSKQILLL-LGE--SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPS  178 (215)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  178 (215)
                      .++..+........+.+..+++ .++++.+.+. +..  |++....+....+++.+..++.++.....++|++.+|-..+
T Consensus        86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~  165 (518)
T COG0728          86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP  165 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence            8888887776666666666655 7888888854 433  23333367888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhh
Q 043801          179 AYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSL  213 (215)
Q Consensus       179 ~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i  213 (215)
                      .+.-+.-++.-+....++.+..+--..+.++|+.+
T Consensus       166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~  200 (518)
T COG0728         166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLI  200 (518)
T ss_pred             hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence            99888887776656666665433224566666554

>PRK10459 colanic acid exporter; Provisional

Probab=98.91  E-value=3.5e-07  Score=76.73  Aligned_cols=173  Identities=15%  Similarity=0.097  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHH
Q 043801           27 KSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGV  105 (215)
Q Consensus        27 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~  105 (215)
                      ++..+-+.+..+++........+...++++ +|+++.|.++.+..+.+++......|++++.    .+. .++++    +
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~-~~~~~----~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR-QDISH----L   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc-ccCCH----H
Confidence            567778888899999999999999999999 9999999999999988833334445666544    222 11222    2


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHH
Q 043801          106 YLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAA  184 (215)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  184 (215)
                      ..+..+......++...++ +.+++++..++. +++    ....+++..+..++..+.......++...+.+.....+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~  150 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS  150 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence            3345555666666666655 666777666554 443    3346777777888888888889999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          185 TLVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       185 ~~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      ..++.......+.. .++|+.+..++..++
T Consensus       151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~  179 (492)
T PRK10459        151 AVVAGFTFAVVSAF-FWPGALAAILGYLVN  179 (492)
T ss_pred             HHHHHHHHHHHHHH-HCCcHHHHHHHHHHH
Confidence            77776666655543 367888888876654

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.81  E-value=5.1e-06  Score=63.78  Aligned_cols=173  Identities=17%  Similarity=0.192  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHH
Q 043801           30 FRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQ  108 (215)
Q Consensus        30 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~  108 (215)
                      +|.+......++...+...+...++.+ +|+++.|.++....+.+++......|++++.....++..++  +++.+....
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            567788888999999999999999998 99999999999999988344444788888888887777432  334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHH
Q 043801          109 RSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVV  188 (215)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  188 (215)
                      .......+.++.....    ..+...+..++. .   ..+........+..........++++.++.+.....++...+.
T Consensus        80 ~~~~~~~~~~~i~~~~----~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLI----LLIASFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL  151 (273)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333333333332222    222224443331 1   1122222222256777888889999999999999999988877


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHhh
Q 043801          189 HVLLSWVAIFKLGWGLLGASLVLSL  213 (215)
Q Consensus       189 ~v~~~~~li~~~~~G~~G~~~a~~i  213 (215)
                      .+.+..++... +.+..+..++..+
T Consensus       152 ~~~~~~~~~~~-~~~~~~~~~~~~~  175 (273)
T PF01943_consen  152 SLLLILLLLFL-GSSLWGFLLGLVI  175 (273)
T ss_pred             HHHHHHHHHHH-hhhHHHHHHHHHH
Confidence            77666666553 2335565555443

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.79  E-value=6.1e-07  Score=75.61  Aligned_cols=187  Identities=14%  Similarity=0.075  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH--
Q 043801           26 LKSLFRLAAPAILVYMLNNLVAMSTQIFCGH---LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY--  100 (215)
Q Consensus        26 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~--  100 (215)
                      -+++++.......+++.-.+.+.-|++++..   .+.++.|.|+++++.-+++.-.+..++-.......++...+++.  
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~  331 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK  331 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence            4788899999999999999999999999988   56788999999999999888899999999999999988754432  


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Q 043801          101 -------DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQ  172 (215)
Q Consensus       101 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  172 (215)
                             ++..+.....++....+++..... -..++.+.+++.+++=....+...++.+|...|+.+++.+..++.++.
T Consensus       332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~  411 (549)
T PF04506_consen  332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV  411 (549)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence                   446666777777777777766644 777788888876543223346788999999999999999999999998


Q ss_pred             CCccHHHHHHHHH---HHHHHHHHHHHHHHhccchhHHHHHHhh
Q 043801          173 SIISPSAYISAAT---LVVHVLLSWVAIFKLGWGLLGASLVLSL  213 (215)
Q Consensus       173 g~~~~~~~~~~~~---~~~~v~~~~~li~~~~~G~~G~~~a~~i  213 (215)
                      ...+.....+-..   .++.+..++++..+ ++|..|..+|..+
T Consensus       412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~i  454 (549)
T PF04506_consen  412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCI  454 (549)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHH
Confidence            7776666555543   45567778888886 7899999999875

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.63  E-value=1.5e-07  Score=65.86  Aligned_cols=65  Identities=20%  Similarity=0.280  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801          149 VFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW  215 (215)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~  215 (215)
                      +++++++.++..+....++.+++.||+|..++.++++.++|+++++++++  ++|..|+++|+.+++
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~   66 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISE   66 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999998  789999999998763

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.58  E-value=3.8e-05  Score=58.34  Aligned_cols=153  Identities=15%  Similarity=0.174  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 043801           46 VAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGL-MLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMV  123 (215)
Q Consensus        46 ~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (215)
                      .+.+...++++ +|+++.|.|+....+.. +...+ ..++......    . .++|+++.++..+.......+.++...+
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~-~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVS-ILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI   76 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777888 99999999999999888 44443 4444444333    2 3355666666665555444443333332


Q ss_pred             HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043801          124 IYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWG  203 (215)
Q Consensus       124 ~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G  203 (215)
                      +   ...+...+ ++++    ...++....+..+.........+.+++.+|.+..........+..+....++... +.+
T Consensus        77 ~---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  147 (251)
T PF13440_consen   77 L---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN  147 (251)
T ss_pred             H---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            2   22222233 3332    3345666667778888899999999999999999999998877764444333332 336


Q ss_pred             hhHHHHHHhh
Q 043801          204 LLGASLVLSL  213 (215)
Q Consensus       204 ~~G~~~a~~i  213 (215)
                      ..+..++..+
T Consensus       148 ~~~~~~~~~~  157 (251)
T PF13440_consen  148 LWSILLAFII  157 (251)
T ss_pred             HHHHHHHHHH
Confidence            6666666544

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.56  E-value=7.4e-06  Score=68.52  Aligned_cols=152  Identities=16%  Similarity=0.109  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHH
Q 043801           24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDM  102 (215)
Q Consensus        24 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~  102 (215)
                      ...+++.+.+.....+++...+...+....+++ +|+++.|.++.+..+.+++......|+..+....++++.++++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~   82 (480)
T COG2244           3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL   82 (480)
T ss_pred             hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence            345678888899999999999999999999999 9999999999999999945555558888888888888876666666


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHH
Q 043801          103 LGVY-LQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYI  181 (215)
Q Consensus       103 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  181 (215)
                      .+.. ...........+.+.........+.      ++    .....+....+..+.........+.+|+.++.+.....
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (480)
T COG2244          83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS  152 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            5555 4444444444444433332222222      22    24556778888899999999999999999999999888


Q ss_pred             HHHH
Q 043801          182 SAAT  185 (215)
Q Consensus       182 ~~~~  185 (215)
                      .+..
T Consensus       153 ~~~~  156 (480)
T COG2244         153 IVSS  156 (480)
T ss_pred             HHHH
Confidence            4444

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.52  E-value=1e-06  Score=67.72  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043801           20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQA   94 (215)
Q Consensus        20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~   94 (215)
                      .++++..|++++.+.|..++.+...+....|+.+++. .|++++|.|+.+.++.. ....+..++.++..|..++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~-~~~~~~~~~~~~~~P~~s~l  272 (273)
T PF01943_consen  198 FFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLAS-AISFLLSSISTVLFPRLSRL  272 (273)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            3347889999999999999999999999999999999 89999999999999999 99999999999999999986

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=4e-05  Score=61.92  Aligned_cols=186  Identities=15%  Similarity=0.125  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHH
Q 043801           27 KSLFRLAAPAILVYMLNNLVAMSTQIFCGH---LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDML  103 (215)
Q Consensus        27 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~  103 (215)
                      ++..+......-+.+.-.+.+-=|..+++.   ++-++.|.|.++++.-+++.-.+..++-.......+|....++.|+.
T Consensus       239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~  318 (530)
T KOG2864|consen  239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV  318 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence            344555555556666666677778888874   67778899999999888788888889988888888887766666555


Q ss_pred             HH---HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801          104 GV---YLQRSAVILTATGIPLMV-IYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA  179 (215)
Q Consensus       104 ~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  179 (215)
                      ++   +.....+....+++.... +..-++..+.++++++=....+...++++|+..++.+++.+..++.++....+...
T Consensus       319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~  398 (530)
T KOG2864|consen  319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID  398 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence            55   445555555555655443 36667788888776542233456789999999999999999999999887777665


Q ss_pred             HHH---HHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          180 YIS---AATLVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       180 ~~~---~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      ..+   ++..++.++.+|+++-+  +|..|..+|..+.
T Consensus       399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiN  434 (530)
T KOG2864|consen  399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIIN  434 (530)
T ss_pred             hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHH
Confidence            544   44567778899999984  4679999887653

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.19  E-value=0.0012  Score=51.27  Aligned_cols=169  Identities=14%  Similarity=0.057  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 043801           22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHL---GNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQ   98 (215)
Q Consensus        22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~---g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~   98 (215)
                      ....++++.++-.|..++.++..+...+.+.-+++-   -.+.+|+|+++..+.- +...+...+-+....++-+.    
T Consensus         6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~l-f~~sp~~~~~~igl~~V~s~----   80 (345)
T PF07260_consen    6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLML-FFASPLSMFHHIGLVFVNSK----   80 (345)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHhChhhhhHHHHHHHhcch----
Confidence            345688999999999999999999998877777662   2355999999999888 88888888887777665332    


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCc
Q 043801           99 KYDMLGVYLQRSAVILTATGIPLMVI-Y-IFSKQILL-LLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSII  175 (215)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~  175 (215)
                       +++-+ ........+.+..+...++ + .++..++. +++.++++.+.+...+.++.+..++.++....++++.=.+++
T Consensus        81 -rsrr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s  158 (345)
T PF07260_consen   81 -RSRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS  158 (345)
T ss_pred             -hhhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence             22211 1111112222222222222 2 34444443 567799999999999999999999999999999987755777


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Q 043801          176 SPSAYISAATLVVHVLLSWVAI  197 (215)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~li  197 (215)
                      ......++...+..+.....++
T Consensus       159 ~iV~~aSI~~v~~qvV~v~~ll  180 (345)
T PF07260_consen  159 WIVGSASIADVIAQVVLVAILL  180 (345)
T ss_pred             eEeehHHHHHHHHHHHHHHHHH
Confidence            7777777665555555444444

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.88  E-value=0.00012  Score=55.58  Aligned_cols=66  Identities=17%  Similarity=0.159  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 043801           28 SLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAY-GLMLGMGSATETLCGQA   94 (215)
Q Consensus        28 ~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~~~~~s~~   94 (215)
                      +.++.+.|..++++.......+|..+++. +|++++|.|+.+.++.+ ... .+..++++...|.++|.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~-~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLAS-LPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999999999999999 99999999999999999 666 99999999999998873

>COG4267 Predicted membrane protein [Function unknown]

Probab=91.00  E-value=7.6  Score=31.71  Aligned_cols=125  Identities=11%  Similarity=0.034  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 043801           75 FAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIP  154 (215)
Q Consensus        75 ~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~  154 (215)
                      +...++.+++-..+..+|...=++|.+++..............+...+.       +. .+-.++  ....  +=...+.
T Consensus        72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~v-f~~~~~--~si~--yk~l~~~  139 (467)
T COG4267          72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IV-FFVNNQ--YSIV--YKILACA  139 (467)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------Hh-hhhcCc--hhHH--HHHHHHH
Confidence            4446677788888888888887777777766554433332222222211       11 111222  1112  2222233


Q ss_pred             HHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801          155 QIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS  214 (215)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~  214 (215)
                      .+...+..=+...++.+.+|.+...+....+.++.+.+..++-.   .++.|.-++..++
T Consensus       140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IG  196 (467)
T COG4267         140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIG  196 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHh
Confidence            33334444455567889999999999999998888888877765   4677776665543

>COG4267 Predicted membrane protein [Function unknown]

Probab=89.38  E-value=11  Score=30.91  Aligned_cols=111  Identities=11%  Similarity=0.091  Sum_probs=75.0

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCc
Q 043801           97 AQKYDMLGVYLQRSAVILTATGIPLMV-IYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSII  175 (215)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~  175 (215)
                      +++.++.....++.+.-.+-+-..+++ ++.+++.+..+++-++.    ..+.+++-.++.-+....+..-.+.--.++.
T Consensus       316 ~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r  391 (467)
T COG4267         316 ENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYVDVLGVSCQIVFMSLLNIFLYFDYR  391 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456677777778877777777666665 48889999999887653    3345566666666665555555555556777


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHH
Q 043801          176 SPSAYISAATLVVHVLLSWVAIFKL-GWGLLGASLVL  211 (215)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~li~~~-~~G~~G~~~a~  211 (215)
                      +..+..+..-.+.|-+++++....- ++--.|..+|.
T Consensus       392 ~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~  428 (467)
T COG4267         392 RIALELTALFLISNGILTFIFLELGPGYYGVGFFLAS  428 (467)
T ss_pred             hhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHH
Confidence            7788888888888988888887631 23334555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	2e-27
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	3e-05

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  106 bits (268), Expect = 2e-27
 Identities = 34/196 (17%), Positives = 88/196 (44%), Gaps = 5/196 (2%)

Query: 23  WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLG 82
             E  +L +LA P ++  +    +     I  G +  +++AAVS+  + I + +    +G
Sbjct: 8   KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAAS-IWLPSILFGVG 66

Query: 83  MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIA 142
           +  A   +  Q  GA +   +   + +  ++     +P++ +   ++ I+  +    A+A
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126

Query: 143 SAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIF-KLG 201
           +    ++  +I  + AY +   ++      S+  P+  I    L++++ L+W+ ++ K G
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186

Query: 202 ---WGLLGASLVLSLS 214
               G +G  +  ++ 
Sbjct: 187 APELGGVGCGVATAIV 202

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 3   LTRVKELTSLSFFQRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLEL 62
           +   K L  +  F+   K    EL  LFRL  P          +     +    LG+  +
Sbjct: 214 IVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVV 273

Query: 63  AAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLM 122
           AA  +         +   + +G+A     G   G Q      +      +   AT     
Sbjct: 274 AAHQVALN-FSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITA 332

Query: 123 VIYIFSKQILLLL--GESSAIASAAAIFVFGLIPQIF 157
           ++ +  ++ + LL       +A A  + +F  I Q  
Sbjct: 333 LLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCM 369

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.95
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.92

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.95  E-value=3e-27  Score=193.83  Aligned_cols=194  Identities=16%  Similarity=0.135  Sum_probs=183.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 043801           20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQK   99 (215)
Q Consensus        20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~   99 (215)
                      +++++.+|++++.+.|.+++++...+...+|+.+++++|++++|+|+++.++.+ +...+..+++++..|.+++++|++|
T Consensus       231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~-~~~~~~~~~~~a~~p~i~~~~g~~~  309 (460)
T 3mkt_A          231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSS-LVFMFPMSIGAAVSIRVGHKLGEQD  309 (460)
T ss_dssp             SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            456778999999999999999999999999999999999999999999999999 8889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHH
Q 043801          100 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPS  178 (215)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  178 (215)
                      +|++++..+++.+....++++.+++ +++++++.++|.+|++..+.+..++++++++.++.+++.+..+++++.||+|.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  389 (460)
T 3mkt_A          310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI  389 (460)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            9999999999999999999999966 899999999999888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHH----hc-cchhHHHHHHhhc
Q 043801          179 AYISAATL-VVHVLLSWVAIFK----LG-WGLLGASLVLSLS  214 (215)
Q Consensus       179 ~~~~~~~~-~~~v~~~~~li~~----~~-~G~~G~~~a~~i~  214 (215)
                      ++.++++. ++++++++++.+.    ++ +|..|+|+|+.++
T Consensus       390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~  431 (460)
T 3mkt_A          390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIG  431 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHH
Confidence            99999986 9999999999996    45 9999999999876

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.92  E-value=6.9e-25  Score=179.80  Aligned_cols=193  Identities=16%  Similarity=0.304  Sum_probs=181.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801           21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  100 (215)
Q Consensus        21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~  100 (215)
                      ..++..|++++.+.|.+++++...+...+|+.+++++|++++|+++++.++.. +...+..+++.+..|.+++++|++|+
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~   84 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQ   84 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            35678999999999999999999999999999999999999999999999988 88888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801          101 DMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY  180 (215)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  180 (215)
                      |+.++..++++....+++++..+++.+++++..+++.|++..+.+..++++.+++.++........+++|+.||++.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999999776688889999999888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-h---ccchhHHHHHHhhc
Q 043801          181 ISAATLVVHVLLSWVAIFK-L---GWGLLGASLVLSLS  214 (215)
Q Consensus       181 ~~~~~~~~~v~~~~~li~~-~---~~G~~G~~~a~~i~  214 (215)
                      .++++.++|+++++++++. +   ++|+.|+++|+.++
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~  202 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIV  202 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence            9999999999999999975 3   69999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00