Citrus Sinensis ID: 043814

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
LLLSASGTTSISVLDNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPLKLEHSTA
cEEEccccccccHHHHHHHHHHHccccccccccEEccccccHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccEEEcccccccccccccccccccHHHHHHHcccccEEEEEEEEEcccEEEcccccccccEEEEcccccccEEEEEEEEEEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccEEEEEEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccHHcccccccccccHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
cEEEcccccccccHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHEHHHHHcccEEEEEcccccccccEEEEcccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHccccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHHHHHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccc
lllsasgttsiSVLDNFIKCltinsevyipfsnfytpnnsSFLSVLESSAQNLRylvpsmpkpefiftplneshVRAAVICSRDLRIHLRIrsgghdyeglsyvsqiETPFFLLDLAKLRSievdindntawVQAGATIGELYYRIAEksntqgftaglcpsvgsgghitgggygTMMRkyglgadnvvdarivdasgrildreamGEDLFWAirgggggsFGIILAWKvklvpvpatVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLAnagpkgkktvtTSYNALFLGDSERLLQVIHKRfpelgltrndcietsWIRSVLYfagypnntepeiLLDVQSLGKNYFKAKldfvqepvpeTVLEGLWKMVLeedipiilwnpyggimskiseseiafphrkgnIFTIQYMNawkdgdekngtkhIGWIRRLYDYmapyvsmfpraayvnyrdldlginkkfnTSYTEASAWGTKYFKDNFNRLVRVKIkvdpdnifrheqsippvplklehsta
lllsasgttsisvLDNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQlanagpkgkktVTTSYNALFLGDSERLLQVIHKRfpelgltrndcIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVdpdnifrheqsippvplklehsta
LLLSASGTTSISVLDNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVgsgghitgggygTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRgggggSFGIILAWKVKLvpvpatvtvftvSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPLKLEHSTA
*********SISVLDNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAI*******FGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFR*****************
LLLSAS*TTSISVLDNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIP***********
********TSISVLDNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPLKLEHSTA
LLLSASGTTSISVLDNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LLLSASGTTSISVLDNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPLKLEHSTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query524 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.948 0.911 0.473 1e-133
A6P6W1545 Cannabidiolic acid syntha N/A no 0.946 0.910 0.467 1e-132
A6P6W0545 Cannabidiolic acid syntha N/A no 0.946 0.910 0.469 1e-132
A6P6V9544 Cannabidiolic acid syntha N/A no 0.938 0.904 0.468 1e-132
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.942 0.906 0.471 1e-131
Q9SVG4570 Reticuline oxidase-like p no no 0.948 0.871 0.468 1e-119
P93479535 Reticuline oxidase OS=Pap N/A no 0.946 0.927 0.436 1e-102
P30986538 Reticuline oxidase OS=Esc N/A no 0.933 0.908 0.431 1e-100
O06997447 Uncharacterized FAD-linke yes no 0.723 0.847 0.278 1e-22
Q796Y5451 Uncharacterized FAD-linke no no 0.780 0.906 0.264 7e-22
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  477 bits (1227), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/515 (47%), Positives = 352/515 (68%), Gaps = 18/515 (3%)

Query: 15  DNFIKCLT--INSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNE 72
           +NF+KC +  I + V  P    YT ++  ++S+L S+ QNLR++  + PKP  I TP N 
Sbjct: 32  ENFLKCFSKHIPNNVANP-KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 90

Query: 73  SHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAW 132
           SH++A ++CS+ + + +R RSGGHD EG+SY+SQ+  PF ++DL  + SI++D++  TAW
Sbjct: 91  SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAW 148

Query: 133 VQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDAR 192
           V+AGAT+GE+YY I EK+    F  G CP+VG GGH +GGGYG +MR YGL ADN++DA 
Sbjct: 149 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 208

Query: 193 IVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLE-QG 251
           +V+  G++LDR++MGEDLFWAIRGGGG +FGII AWK+KLV VP+  T+F+V K +E  G
Sbjct: 209 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 268

Query: 252 ATKILYKWQQVADKLDEDLFIR---VIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVI 308
             K+  KWQ +A K D+DL +    +   + +   K K TV   ++++F G  + L+ ++
Sbjct: 269 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 328

Query: 309 HKRFPELGLTRNDCIETSWIRSVLYFAGYPN----NTEPEILLDVQSLGKNYFKAKLDFV 364
           +K FPELG+ + DC E SWI + ++++G  N    N + EILLD  +  K  F  KLD+V
Sbjct: 329 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 388

Query: 365 QEPVPETVLEGLWKMVLEEDI--PIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNA 422
           ++P+PET +  + + + EED+   + +  PYGGIM +ISES I FPHR G ++ + Y  +
Sbjct: 389 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 448

Query: 423 WKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG-INKKFNTSYTEASAW 481
           W+   +++  KHI W+R +Y++  PYVS  PR AY+NYRDLDLG  N     +YT+A  W
Sbjct: 449 WE--KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW 506

Query: 482 GTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 516
           G KYF  NFNRLV+VK KVDP+N FR+EQSIPP+P
Sbjct: 507 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 541
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
147846530539 hypothetical protein VITISV_003756 [Viti 0.980 0.953 0.717 0.0
225444135539 PREDICTED: reticuline oxidase-like prote 0.980 0.953 0.713 0.0
255564335548 Reticuline oxidase precursor, putative [ 0.971 0.928 0.727 0.0
356533127543 PREDICTED: reticuline oxidase-like prote 0.984 0.950 0.704 0.0
356533129540 PREDICTED: reticuline oxidase-like prote 0.979 0.95 0.702 0.0
224056801507 predicted protein [Populus trichocarpa] 0.965 0.998 0.730 0.0
224115654545 predicted protein [Populus trichocarpa] 0.961 0.924 0.725 0.0
356555926543 PREDICTED: reticuline oxidase-like prote 0.984 0.950 0.691 0.0
255564331548 Reticuline oxidase precursor, putative [ 0.975 0.932 0.725 0.0
449435514546 PREDICTED: reticuline oxidase-like prote 0.965 0.926 0.700 0.0
>gi|147846530|emb|CAN81654.1| hypothetical protein VITISV_003756 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/517 (71%), Positives = 435/517 (84%), Gaps = 3/517 (0%)

Query: 1   LLLSASGTTSISVLDNFIKCLTINSEVYIPFSN-FYTPNNSSFLSVLESSAQNLRYLVPS 59
           +LLSAS T S  +L+ F +C+++NSE+ IP S  FYTPN +SF + L+SSAQNLRYLVPS
Sbjct: 14  ILLSASVTASDPILEKFSQCVSLNSEILIPVSTAFYTPNTTSFSAFLQSSAQNLRYLVPS 73

Query: 60  MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKL 119
            PKPEFIFTP++++HV+AAVICS+ L IH+R+RSGGHDYEGLSYVS++E PF ++DLA+L
Sbjct: 74  APKPEFIFTPMHDTHVQAAVICSKQLSIHMRVRSGGHDYEGLSYVSEMEKPFIMVDLARL 133

Query: 120 RSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMR 179
           R I+VDI+DN+AWVQAGATIGE+YYRI EKS T GF AGLCPS+G GGHITGG YG+MMR
Sbjct: 134 RGIKVDIDDNSAWVQAGATIGEVYYRIYEKSKTHGFPAGLCPSLGIGGHITGGAYGSMMR 193

Query: 180 KYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATV 239
           KYGLGADNV+DARIVD  GRILDRE+MGEDLFWAIRGGGG SFGIIL WK++LVPVP+TV
Sbjct: 194 KYGLGADNVMDARIVDVHGRILDRESMGEDLFWAIRGGGGASFGIILWWKIRLVPVPSTV 253

Query: 240 TVFTVSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLG 299
           TVFTV + LEQGATK+LY+WQQVADKL EDLFIRVI+ +  A  KG KTV+ ++N+LFLG
Sbjct: 254 TVFTVGRALEQGATKLLYRWQQVADKLHEDLFIRVIMSV-KANEKGNKTVSAAFNSLFLG 312

Query: 300 DSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKA 359
             +RLLQ++ + FPELGLT  DC E SWIRSVLY  GYP+ T PE+LL  +S  KNYFKA
Sbjct: 313 GVDRLLQIMGESFPELGLTMKDCTEMSWIRSVLYIGGYPSGTPPEVLLQGKSTFKNYFKA 372

Query: 360 KLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQY 419
           K DFV+EP+PE  LEGLW  +LEE  P+++WNPYGG+MSKISESEI FPHRKGNIF IQY
Sbjct: 373 KSDFVKEPIPENALEGLWTRLLEEXSPLMIWNPYGGMMSKISESEIPFPHRKGNIFKIQY 432

Query: 420 MNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEAS 479
           +  W+DG EKN   H+ WIRRLY YM PYVSMFPRAAYVNYRDLDLGINK  NTS+ +AS
Sbjct: 433 LTTWQDG-EKNTKNHMEWIRRLYCYMTPYVSMFPRAAYVNYRDLDLGINKNSNTSFIQAS 491

Query: 480 AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 516
            WG KYFK NFNRLV VK KVDPDN FRHEQSIPP+P
Sbjct: 492 VWGAKYFKGNFNRLVHVKTKVDPDNFFRHEQSIPPMP 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444135|ref|XP_002268361.1| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564335|ref|XP_002523164.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537571|gb|EEF39195.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356533127|ref|XP_003535119.1| PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356533129|ref|XP_003535120.1| PREDICTED: reticuline oxidase-like protein-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224056801|ref|XP_002299030.1| predicted protein [Populus trichocarpa] gi|222846288|gb|EEE83835.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115654|ref|XP_002317089.1| predicted protein [Populus trichocarpa] gi|222860154|gb|EEE97701.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555926|ref|XP_003546280.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|255564331|ref|XP_002523162.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537569|gb|EEF39193.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435514|ref|XP_004135540.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] gi|449488542|ref|XP_004158078.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.969 0.951 0.591 4.3e-164
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.969 0.954 0.582 9e-164
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.975 0.951 0.579 9.3e-162
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.967 0.935 0.573 1.5e-154
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.965 0.935 0.543 9e-148
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.952 0.946 0.463 4.9e-124
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.956 0.941 0.476 4.4e-123
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.910 0.9 0.476 3.1e-122
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.958 0.943 0.466 2.2e-121
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.958 0.952 0.440 4.7e-119
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 307/519 (59%), Positives = 384/519 (73%)

Query:     1 LLLSASGTT-SISVLD-NFIKCLTINSEVYIPF-SNFYTP--NNSSFLSVLESSAQNLRY 55
             LLLS S    S S +  +F+ CL  NS+   P  S+F+T   N SSF   LE+SAQNLRY
Sbjct:    17 LLLSLSYIPLSFSTIQQDFVMCLVDNSDASFPMDSSFFTHDLNASSFKLALETSAQNLRY 76

Query:    56 LVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLD 115
             L+PS PKPEFIF PL E+HV+AAV+C++ L++HLR+RSGGHDYEGLSYVS++ET F ++D
Sbjct:    77 LMPSNPKPEFIFEPLYETHVQAAVLCAKKLKLHLRLRSGGHDYEGLSYVSEMETAFVIVD 136

Query:   116 LAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXX 175
             L+KLR I VDI  N+AWV AGA+IGE+YYRI EKS   GF AGLC S+            
Sbjct:   137 LSKLRQISVDIESNSAWVHAGASIGEVYYRIQEKSKIHGFPAGLCTSLGIGGHIIGGAYG 196

Query:   176 TMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 235
             +MMRK+GLGADNV+DARIVDA G+IL+R AMGED+FWAIR     SFG+ILAWK+KL   
Sbjct:   197 SMMRKFGLGADNVLDARIVDADGKILNRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPV 256

Query:   236 XXXXXXXXXSKTLEQGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGK-KTVTTSYN 294
                      ++TLEQ  TK+LYKWQQVADKLDEDLFIRVIIQ  +  PK K +T++TSY 
Sbjct:   257 PEIVTVFTVTRTLEQDGTKLLYKWQQVADKLDEDLFIRVIIQPTSKTPKSKERTISTSYQ 316

Query:   295 ALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGK 354
               FLGD+ RLLQV+ + FP+LGLT+ DC+ETSWI+SV+Y AG+P+    E LLD +SL K
Sbjct:   317 GQFLGDANRLLQVMQRSFPQLGLTKKDCLETSWIKSVMYIAGFPSTAPSEALLDGKSLFK 376

Query:   355 NYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNI 414
             NYFKAK D+V+EP+P   LEGLW+ +LEED P+ +WNPYGG+M+KI E+E  FPHR G +
Sbjct:   377 NYFKAKSDYVEEPIPVEGLEGLWEKLLEEDSPLTIWNPYGGMMAKIPETETPFPHRSGTL 436

Query:   415 FTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFNTS 474
             F IQ++  W+DG + +  KH+GW+R +Y YM  YVS  PR+AYVNYRDLDLG+N K +  
Sbjct:   437 FKIQWLTLWQDG-KTSEAKHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGS-- 493

Query:   475 YTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIP 513
               +A  WG +YFK NF RLV +K K DP+N FRHEQSIP
Sbjct:   494 --DAREWGNRYFKGNFERLVEIKAKFDPENFFRHEQSIP 530
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029820001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (539 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 3e-29
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 2e-26
pfam0803145 pfam08031, BBE, Berberine and berberine like 2e-19
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 8e-06
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 3e-05
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  111 bits (281), Expect = 3e-29
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 63  PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKL-RS 121
           P  +  P +E  V A V  + +  + + +R GG    G + +    T   +LDL++L   
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVL----TGGVVLDLSRLNGI 56

Query: 122 IEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKY 181
           +E+D  D TA V+AG T+G+L   +A K    G   G       GG I   G G    +Y
Sbjct: 57  LEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERY 116

Query: 182 GLGADNVVDARIVDASGRILD 202
           GL  DNV+   +V A G ++ 
Sbjct: 117 GLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 524
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.93
PRK11183564 D-lactate dehydrogenase; Provisional 99.91
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
KOG1232511 consensus Proteins containing the FAD binding doma 99.87
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.86
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.81
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.72
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.69
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.66
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.65
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.62
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.56
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.47
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.19
PLN00107257 FAD-dependent oxidoreductase; Provisional 95.15
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 94.98
PRK09799258 putative oxidoreductase; Provisional 94.68
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 93.64
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.3
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 91.9
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 91.79
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 89.6
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 89.12
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 87.68
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 85.22
PF03614165 Flag1_repress: Repressor of phase-1 flagellin; Int 82.84
PLN02906 1319 xanthine dehydrogenase 82.07
PLN00192 1344 aldehyde oxidase 82.01
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.1e-38  Score=335.53  Aligned_cols=191  Identities=20%  Similarity=0.265  Sum_probs=171.2

Q ss_pred             ccccCCCCCCCceEEEecCCHHHHHHHHHHHH--hCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCc-------e
Q 043814           52 NLRYLVPSMPKPEFIFTPLNESHVRAAVICSR--DLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRS-------I  122 (524)
Q Consensus        52 n~r~~~~~~~~P~~vv~p~s~edv~~~v~~a~--~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~-------i  122 (524)
                      ...|+......|.+|++|+|++||+++|++|+  +++++|.+||+|||+.|.+...+    +++|||++||+       +
T Consensus        54 s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~----GivIdms~Ln~i~~~~~ii  129 (525)
T PLN02441         54 SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG----GVVVDMRSLRGGVRGPPVI  129 (525)
T ss_pred             hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC----eEEEECCCCCCcCccCceE
Confidence            34688888889999999999999999999997  67999999999999998887655    89999999999       3


Q ss_pred             EEeCCCCeEEEeCCCCHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe
Q 043814          123 EVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD  202 (524)
Q Consensus       123 ~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~  202 (524)
                      ++|.+..+|+|++|++|.++.+++.++|+. +...+.+..+++||.+++||+|..+.+||..+|+|++++||++||++++
T Consensus       130 ~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~  208 (525)
T PLN02441        130 VVSGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVT  208 (525)
T ss_pred             EEcCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEE
Confidence            788899999999999999999999999842 2234666789999999999999999999999999999999999999998


Q ss_pred             -ccCCCchhhhhhhccCCCcceEEEEEEEEEEecCceEEEEEEEecc
Q 043814          203 -REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTL  248 (524)
Q Consensus       203 -~~~~~~dlf~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~  248 (524)
                       ++.+|+|||||++||+ |+|||||++|||++|+|+...++.+.+..
T Consensus       209 ~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        209 CSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             eCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence             6778999999999998 99999999999999999977777776654

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-127
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-114
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-108
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-95
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 1e-95
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-95
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-95
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 2e-94
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 2e-94
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 2e-94
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 1e-19
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 1e-17
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 8e-16
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 5e-14
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 3e-12
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-10
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 2e-09
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-08
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/515 (43%), Positives = 329/515 (63%), Gaps = 18/515 (3%)
Query: 15  DNFIKCLT--INSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNE 72
           +NF+KC +  I + V  P    YT ++  ++S+L S+ QNLR++  + PKP  I TP N 
Sbjct: 5   ENFLKCFSKHIPNNVANP-KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 73  SHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAW 132
           SH++A ++CS+ + + +R RSGGHD EG+SY+SQ+  PF ++DL  + SI++D++  TAW
Sbjct: 64  SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAW 121
Query: 133 VQAGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDAR 192
           V+AGAT+GE+YY I EK+    F  G CP+V             +MR YGL ADN++DA 
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181
Query: 193 IVDASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QG 251
           +V+  G++LDR++MGEDLFWAIR     +FGII AWK+KL             K +E  G
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241
Query: 252 ATKILYKWQQVADKLDEDLFIR---VIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVI 308
             K+  KWQ +A K D+DL +    +   + +   K K TV   ++++F G  + L+ ++
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301
Query: 309 HKRFPELGLTRNDCIETSWIRSVLYFAGYPN----NTEPEILLDVQSLGKNYFKAKLDFV 364
           +K FPELG+ + DC E SWI + ++++G  N    N + EILLD  +  K  F  KLD+V
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361
Query: 365 QEPVPETVLEGLWKMVLEEDIPIILW--NPYGGIMSKISESEIAFPHRKGNIFTIQYMNA 422
           ++P+PET +  + + + EED+   ++   PYGGIM +ISES I FPHR G ++ + Y  +
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421
Query: 423 WKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG-INKKFNTSYTEASAW 481
           W+   +++  KHI W+R +Y++  PYVS  PR AY+NYRDLDLG  N     +YT+A  W
Sbjct: 422 WE--KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW 479
Query: 482 GTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 516
           G KYF  NFNRLV+VK KVDP+N FR+EQSIPP+P
Sbjct: 480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-176
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-175
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-173
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-172
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-171
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-166
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-118
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 8e-48
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-36
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-19
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 1e-17
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 1e-15
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 7e-10
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 5e-09
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-08
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 2e-06
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 2e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  598 bits (1544), Expect = 0.0
 Identities = 240/517 (46%), Positives = 346/517 (66%), Gaps = 16/517 (3%)

Query: 12  SVLDNFIKCLTINSEVYIPFSNF-YTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPL 70
           +  +NF+KC + +    +      YT ++  ++S+L S+ QNLR++  + PKP  I TP 
Sbjct: 2   NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61

Query: 71  NESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNT 130
           N SH++A ++CS+ + + +R RSGGHD EG+SY+S  + PF ++DL  + SI++D++  T
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYIS--QVPFVVVDLRNMHSIKIDVHSQT 119

Query: 131 AWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVD 190
           AWV+AGAT+GE+YY I EK+    F  G CP+VG GGH +GGGYG +MR YGL ADN++D
Sbjct: 120 AWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179

Query: 191 ARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLE- 249
           A +V+  G++LDR++MGEDLFWAIRGGGG +FGII AWK+KLV VP+  T+F+V K +E 
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239

Query: 250 QGATKILYKWQQVADKLDEDLFIRVIIQLANAGP---KGKKTVTTSYNALFLGDSERLLQ 306
            G  K+  KWQ +A K D+DL +       N      K K TV   ++++F G  + L+ 
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299

Query: 307 VIHKRFPELGLTRNDCIETSWIRSVLYFAGYPN----NTEPEILLDVQSLGKNYFKAKLD 362
           +++K FPELG+ + DC E SWI + ++++G  N    N + EILLD  +  K  F  KLD
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLD 359

Query: 363 FVQEPVPETVLEGLWKMVLEEDIP--IILWNPYGGIMSKISESEIAFPHRKGNIFTIQYM 420
           +V++P+PET +  + + + EED+   + +  PYGGIM +ISES I FPHR G ++ + Y 
Sbjct: 360 YVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYT 419

Query: 421 NAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKF-NTSYTEAS 479
            +W+  ++    KHI W+R +Y++  PYVS  PR AY+NYRDLDLG        +YT+A 
Sbjct: 420 ASWEKQEDNE--KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR 477

Query: 480 AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 516
            WG KYF  NFNRLV+VK KVDP+N FR+EQSIPP+P
Sbjct: 478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.89
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.85
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.78
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.22
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.52
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.24
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.11
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 93.62
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.11
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 87.98
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 87.11
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 80.71
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.2e-88  Score=726.75  Aligned_cols=501  Identities=48%  Similarity=0.931  Sum_probs=428.4

Q ss_pred             ccccHHHHhhhcCCCCCCCc-eeecCCCCCchhHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEE
Q 043814           13 VLDNFIKCLTINSEVYIPFS-NFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRI   91 (524)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~-~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~   91 (524)
                      ..++|.+||.+.+..+.+++ .|++|+|+.|++++.++.+|.||+......|.+|++|++++||+++|++|+++++||.+
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            45789999999876555554 56899999999998888999999998899999999999999999999999999999999


Q ss_pred             EeCCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCCHHHHHHHHHHhCCCceEecCCCCCccccccccC
Q 043814           92 RSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITG  171 (524)
Q Consensus        92 ~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~g  171 (524)
                      ||||||+.+.+....  .++++|||++||+|++|+++++|+||+|+++++|+++|.++|+++.++.|.|++|||||+++|
T Consensus        83 rggGh~~~g~~~~~~--~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~g  160 (518)
T 3vte_A           83 RSGGHDAEGMSYISQ--VPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSG  160 (518)
T ss_dssp             ESSCCCTTCTTTCCS--SSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHT
T ss_pred             ECCCcCCCCCccCCC--CCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCC
Confidence            999999988774322  248999999999999999999999999999999999999998788999999999999999999


Q ss_pred             CCCCCCccccCCcccceeEEEEEccCCcEEeccCCCchhhhhhhccCCCcceEEEEEEEEEEecCceEEEEEEEecch-h
Q 043814          172 GGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLE-Q  250 (524)
Q Consensus       172 gg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~~-~  250 (524)
                      ||+|+++++||+++|+|++++||++||++++.+.+|+|||||+|||++|+|||||+++||++|+|+.+..|.+.+.++ +
T Consensus       161 Gg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~  240 (518)
T 3vte_A          161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH  240 (518)
T ss_dssp             CCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHH
T ss_pred             CCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHH
Confidence            999999999999999999999999999999754568999999999855999999999999999999888888887654 6


Q ss_pred             hHHHHHHHHHHHHhhccccceEEEEEEeecCC---CCCCceEEEEEEEEecCChHHHHHHHHhhCCcCCCCcCcccccCh
Q 043814          251 GATKILYKWQQVADKLDEDLFIRVIIQLANAG---PKGKKTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSW  327 (524)
Q Consensus       251 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~g~~~~~v~~~~~~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (524)
                      ++.+++.+||++++++|+++++.+.+...++.   ..+...+.+.+.++|+|+.+++.+.|.+.++.+++...++.+++|
T Consensus       241 ~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w  320 (518)
T 3vte_A          241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSW  320 (518)
T ss_dssp             HHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecch
Confidence            67889999999999999999998887753211   111123467888999999999999998888888776677889999


Q ss_pred             HHHHHHhhCCCCC-CC---chhhccccccCcccceeecccccCCCCHHHHHHHHHHHHcC--CccEEEEeecCCCCCCCC
Q 043814          328 IRSVLYFAGYPNN-TE---PEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEE--DIPIILWNPYGGIMSKIS  401 (524)
Q Consensus       328 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~f~~~s~~~~~~~~~~~i~~~~~~~~~~--~~~~i~~~~~GG~i~~v~  401 (524)
                      +++..++.+++.+ .+   ++.+.++......|||.|++|+.+++++++|+.+++.+.+.  +.+.++++++||++++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~  400 (518)
T 3vte_A          321 IDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEIS  400 (518)
T ss_dssp             HHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSC
T ss_pred             hhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCC
Confidence            9988887765543 33   45555554445567899999999899999999999988763  357899999999999999


Q ss_pred             CCCCCcccccCceEEEEEEeEeCCCCcccchhHHHHHHHHHHhccccccCCCCcccccCCCcccC-CCCCCCcchhhhch
Q 043814          402 ESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG-INKKFNTSYTEASA  480 (524)
Q Consensus       402 ~~~tAf~~R~~~~~~~~~~~~w~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~g~Y~Ny~d~~~~-~~~~~~~~~~~~~~  480 (524)
                      .++|||+||+..+|.+++.+.|.++  +.++++.+|++++++.|.|+.+..+.|+|+||.|.+++ .+...+++++..+.
T Consensus       401 ~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~  478 (518)
T 3vte_A          401 ESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI  478 (518)
T ss_dssp             TTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHH
T ss_pred             CCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhh
Confidence            9999999998558999999999765  45678899999999999999765567999999999876 32223455666778


Q ss_pred             hhhhhhcccHHHHHHHHhhcCCCCCCccCCCCCCCCC
Q 043814          481 WGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVPL  517 (524)
Q Consensus       481 ~~~~y~g~n~~RL~~IK~kyDP~nvF~~~~~I~~~~~  517 (524)
                      |++.|||+||+||++||+||||+|||+++|||||.+.
T Consensus       479 w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            9999999999999999999999999999999998765
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 524
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-16
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 3e-16
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 2e-06
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 1e-04
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 75.7 bits (185), Expect = 2e-16
 Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 8/179 (4%)

Query: 62  KPEFIFTPLNESHVRAAVICSRDLR---IHLRIRSGGHDYEGLSYV--SQIETPFFLLDL 116
            P  +  P +   + A +  +         +  R  GH   G ++     +     L D 
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 117 AKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGT 176
           A    I V  +             ++      +             +  GG ++  G   
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 177 MMRKYGLGADNVVDARIVDASGRILD-REAMGEDLFWAIRGGGGGSFGIILAWKVKLVP 234
              ++G    NV++  ++   G ++   + +  DLF A+ GG G  FG+I   ++ + P
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.86
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.84
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.83
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.29
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.91
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.52
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 92.87
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 92.3
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 91.25
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 85.98
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 81.03
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=2.3e-37  Score=292.06  Aligned_cols=178  Identities=16%  Similarity=0.253  Sum_probs=161.0

Q ss_pred             cccccCCCCCCCceEEEecCCHHHHHHHHHHHHhC---CCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-----
Q 043814           51 QNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDL---RIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-----  122 (524)
Q Consensus        51 ~n~r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~---~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-----  122 (524)
                      +...|+......|.+|++|+|+|||+++|++|+++   ++||++||+||++.+.+...+    +++|||++||+|     
T Consensus        18 ~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~----~ividl~~l~~i~~~~~   93 (206)
T d1w1oa2          18 ASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG----GVVVNMASLGDAAAPPR   93 (206)
T ss_dssp             TSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT----SEEEEGGGGGCSSSSCS
T ss_pred             hEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC----CEeeeccccceeeecee
Confidence            34457666778999999999999999999999997   689999999999998877654    899999999985     


Q ss_pred             -EEeCCCCeEEEeCCCCHHHHHHHHHHhCCCceEe-cCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcE
Q 043814          123 -EVDINDNTAWVQAGATIGELYYRIAEKSNTQGFT-AGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRI  200 (524)
Q Consensus       123 -~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v  200 (524)
                       ++|++..+++||+|+++.+|.++|.++|  +.++ .+....+++||++++||+|..+++||+.+|+|+++|||++||++
T Consensus        94 ~~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~  171 (206)
T d1w1oa2          94 INVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEM  171 (206)
T ss_dssp             EEECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCE
T ss_pred             EEEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcE
Confidence             6899999999999999999999999998  4443 45667789999999999999999999999999999999999999


Q ss_pred             Ee-ccCCCchhhhhhhccCCCcceEEEEEEEEEEec
Q 043814          201 LD-REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPV  235 (524)
Q Consensus       201 ~~-~~~~~~dlf~a~rg~~~g~~GIvt~~tlk~~p~  235 (524)
                      ++ ++.+|+||||++|||+ |+|||||++|||++|+
T Consensus       172 ~~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         172 VTCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             EEECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            97 6678999999999998 9999999999999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure