Citrus Sinensis ID: 043825

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MGRPETSTSQWNIPTRDEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL
Secondary Structure (PSIPRED)
ccccccccEEccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEcccccEEcEEEEcHHHHHHHHHHHHHcccEEEccccccccccccEEEEEEEcccccccccccccccEEEEEEEcccccccccHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEccccccEEEEEHHHHHHHHHHHHHHHHHHcEEEEEccccccccccEEEEEEEccccccccccccccEEEEEEEccccccccccHcHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHcEEccccccccHcccHHHEHccc
Coil and Loop (DISEMBL)
mgrpetstsqwniptrdeyqpeeytnqrQISTRQLYQLWIAegfipdnseATAEKYLEQLINRGFVEvkkrraggtiktcsirsrcwPSLLVVALNAefvfsptlapkgesrknVKRFCALEqqsdfaylddyyphlhsllyftsesdhldpidWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLnipslkslpssFFNYLSNlytlnmpfsdidHIADEFWKMNKL
Flexible Loop (DISEMBL)
mgrpetstsqwniptrdeyqpeeytNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLInrgfvevkkrraggtiktcsirsrcWPSLLVVALNAEFVFsptlapkgesrknVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL
Low Complexity Region (SEG)
MGRPETSTSQWNIPTRDEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL
Disordered region (IsUnstruct)
*****************************ISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEFVFSPTLAPK***RKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWK****
Disordered Region (DISOPRED)
******S*SQWNIPTRDEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEFVFSPTLAP**ESRKNVKRFCALEQQ**********PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL
Disordered Region (DISEMBL)
**********WNIPTRDEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL
Disordered Region (DISPRO)
**********W**PTRDEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRPETSTSQWNIPTRDEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q9M667	835	Disease resistance protei	yes	no	0.855	0.240	0.278	1e-06
Q9STE5	847	Putative disease resistan	no	no	0.829	0.230	0.272	2e-05
Q39214	926	Disease resistance protei	no	no	0.838	0.212	0.244	8e-05
Q6L439	1244	Putative late blight resi	N/A	no	0.817	0.154	0.262	9e-05
P0C8S1	906	Probable disease resistan	no	no	0.748	0.194	0.274	0.0002
Q6L438	1306	Putative late blight resi	N/A	no	0.770	0.138	0.260	0.0005
Q60CZ8	1306	Putative late blight resi	N/A	no	0.770	0.138	0.260	0.0005

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 92/219 (42%), Gaps = 18/219 (8%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEK----YLEQLINRGFVEVKKRRAGGT 76
           PE+Y    +I   +L  L +AEGFI  + E   E     Y+E+LI+R  +E   RR  G 
Sbjct: 428 PEDY----EIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEA-VRRERGK 482

Query: 77  IKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPH 136
           + +C I        +  +    FV          S    +R     Q   ++        
Sbjct: 483 VMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQFKRYSSEKRKNKR 542

Query: 137 LHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIP 196
           + S LYF  E DHL  +D+    E  KLLR LD G L L   ++   +L  LRYL ++  
Sbjct: 543 MRSFLYF-GEFDHLVGLDF----ETLKLLRVLDFGSLWLPFKIN--GDLIHLRYLGIDGN 595

Query: 197 SLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
           S+     +    +S L  L   F   ++  +E   + KL
Sbjct: 596 SINDFDIAAI--ISKLRFLQTLFVSDNYFIEETIDLRKL 632

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE5|R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 91/220 (41%), Gaps = 25/220 (11%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEK----YLEQLINRGFVEVKKRRAGGT 76
           PE+Y    ++   +L QL +AEGFI ++ E T E     Y+E L+    VEV KR+ G  
Sbjct: 421 PEDY----EVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVVKRKKG-- 474

Query: 77  IKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDD--YY 134
            K  S R         +  + E  F      +  S     R   +    D  YL D    
Sbjct: 475 -KLMSFRIHDLVREFTIKKSKELNFVNVYDEQHSS--TTSRREVVHHLMDDNYLCDRRVN 531

Query: 135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLG--YLVLNQYL-----SEIENLSL 187
             + S L+F    + +  +  + I    KLLR L+LG  + +   Y        I  L  
Sbjct: 532 TQMRSFLFFGKRRNDITYV--ETITLKLKLLRVLNLGGLHFICQGYSPWSLPDVIGGLVH 589

Query: 188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD 227
           LRYL +    + +LP  F + L  L TL+   +  + + D
Sbjct: 590 LRYLGIADTVVNNLP-DFISNLRFLQTLDASGNSFERMTD 628

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 20/217 (9%)

Query: 29  QISTRQLYQLWIAEGFIPD----NSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRS 84
           ++  ++L ++W+A+ F+       +E  A+ YL +L+ R  ++V      G  K   +  
Sbjct: 446 RMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHD 505

Query: 85  RCWPSLLVVALNAEFVFSPTLAPKGESRKNV------KRFCALEQQSDFAYLDDYYPHLH 138
             W   L V+    F         G+           +  C    Q +         +LH
Sbjct: 506 VIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCI---QKEMTPDSIRATNLH 562

Query: 139 SLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSL 198
           SLL  +S    ++      +     LLRALDL    +++    +  +  L+YL L+   +
Sbjct: 563 SLLVCSSAKHKME------LLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQV 616

Query: 199 KSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
           K LP +F + L NL TLN   S I+ +    WK+ KL
Sbjct: 617 KELPKNF-HKLVNLETLNTKHSKIEELPLGMWKLKKL 652

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L439|R1A4_SOLDE Putative late blight resistance protein homolog R1A-4 OS=Solanum demissum GN=R1A-4 PE=5 SV=2

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 99/240 (41%), Gaps = 48/240 (20%)

Query: 24   YTNQRQISTRQLYQLWIAEGFIPDNS----EATAEKYLEQLINRGFVEVKKR-RAGGTIK 78
            +   R+I   +L +LWI+E FI        E  AE YLE LI R  V V +R  + G +K
Sbjct: 788  FLGVREIRISRLIRLWISESFIKSCEGRRLEDIAEGYLENLIGRNLVMVTQRANSNGKVK 847

Query: 79   TCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPHL- 137
             C +          V LN           +  + +N+  +   +Q +   Y    + HL 
Sbjct: 848  ACRLHD--------VLLN--------FCKERAAEENLLLWINRDQSTKAVYSHKQHAHLA 891

Query: 138  ----HSLLYFTSESDHLDPIDWQKI------CEMY---------KLLRALDLGYLVLNQY 178
                 +L+ +++ S  +  +   +       C +Y         K L+ LDL + V+  +
Sbjct: 892  FTKMDNLVEWSASSSLVGSVLIMRYNPYFARCPLYAVSHILLNFKFLKVLDLKHQVVIDF 951

Query: 179  LSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDH---IADEFWKMNKL 235
            +     L  LRYL  +I    S+PSS  N L NL TL +    + H   +    W M KL
Sbjct: 952  IP--TELPYLRYLTADIGQ-NSIPSSISN-LWNLETLILNRRSVVHKILLPSTVWDMVKL 1007

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 79/197 (40%), Gaps = 21/197 (10%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIP---DNS--EATAEKYLEQLINRGFVEVKKRRAGG 75
           PE+Y    +I  + L+  W+AEG I    D S  + T E YLE+L+ R  V V++     
Sbjct: 429 PEDY----KIDVKILFNYWVAEGIITPFHDGSTIQDTGESYLEELVRRNMVVVEESYLTS 484

Query: 76  TIKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFC-----ALEQQSDFAYL 130
            I+ C +        L  A    F+    +     +  N +  C      L   +    L
Sbjct: 485 RIEYCQMHDMMREVCLSKAKEENFIRVVKVPTTTSTTINAQSPCRSRRLVLHSGNALHML 544

Query: 131 DDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVL--NQYLSEIENLSL 187
                    S+L F  E     P  +Q +     LLR LDL Y+     +  S I +L  
Sbjct: 545 GHKDNKKARSVLIFGVEEKFWKPRGFQCL----PLLRVLDLSYVQFEGGKLPSSIGDLIH 600

Query: 188 LRYLKLNIPSLKSLPSS 204
           LR+L L    +  LPSS
Sbjct: 601 LRFLSLYEAGVSHLPSS 617

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L438|R1A6_SOLDE Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 34/215 (15%)

Query: 24  YTNQRQISTRQLYQLWIAEGFIPDNS----EATAEKYLEQLINRGFVEVKKRR-AGGTIK 78
           +   R I   +L +LWI+E FI  +     E  AE YLE LI R  V V +R  + G +K
Sbjct: 782 FLEDRVIDISRLIRLWISEAFIKSSEGRSLEDIAEGYLENLIGRNLVMVTQRAISDGKVK 841

Query: 79  TCSI--------RSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCAL----EQQSD 126
            C +        + R      ++ +N + +  P+       +     F  +    E  + 
Sbjct: 842 ACRLHDVLLDFCKERAAEENFLLWINRDQITKPSSCVYSHKQHAHLAFTEMHNLVEWSAS 901

Query: 127 FAYL------DDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS 180
            +++      + Y P+ H L         L      +I   +K L+ LDL + V   ++ 
Sbjct: 902 CSFVGSVVLSNKYEPYFHDL-------SSLHDFSISRILPNFKFLKVLDLEHRVFIDFIP 954

Query: 181 EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTL 215
               L  LRY    I    S+PSS  N L NL TL
Sbjct: 955 --TELPYLRYFSALIDQ-NSIPSSISN-LWNLETL 985

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q60CZ8|R1A10_SOLDE Putative late blight resistance protein homolog R1A-10 OS=Solanum demissum GN=R1A-10 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 34/215 (15%)

Query: 24  YTNQRQISTRQLYQLWIAEGFIPDNS----EATAEKYLEQLINRGFVEVKKRR-AGGTIK 78
           +   R I   +L +LWI+E FI  +     E  AE YLE LI R  V V +R  + G +K
Sbjct: 782 FLEDRVIDISRLIRLWISEAFIKSSEGRSLEDIAEGYLENLIGRNLVMVTQRAISDGKVK 841

Query: 79  TCSI--------RSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCAL----EQQSD 126
            C +        + R      ++ +N + +  P+       +     F  +    E  + 
Sbjct: 842 ACRLHDVLLDFCKERAAEENFLLWINRDQITKPSSCVYSHKQHAHLAFTEMHNLVEWSAS 901

Query: 127 FAYL------DDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS 180
            +++      + Y P+ H L         L      +I   +K L+ LDL + V   ++ 
Sbjct: 902 CSFVGSVVLSNKYEPYFHDL-------SSLHDFSISRILPNFKFLKVLDLEHRVFIDFIP 954

Query: 181 EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTL 215
               L  LRY    I    S+PSS  N L NL TL
Sbjct: 955 --TELPYLRYFSALIDQ-NSIPSSISN-LWNLETL 985

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
359496848	856	PREDICTED: disease resistance RPP8-like	0.868	0.238	0.303	3e-16
147766035	902	hypothetical protein VITISV_038742 [Viti	0.868	0.226	0.303	5e-16
444301787	878	NBS type disease resistance protein [Mal	0.863	0.231	0.330	3e-15
297744337	591	unnamed protein product [Vitis vinifera]	0.855	0.340	0.337	2e-13
359491404	922	PREDICTED: probable disease resistance R	0.821	0.209	0.330	2e-13
351720730	761	NBS-LRR disease-resistance protein scn3r	0.889	0.274	0.282	3e-13
350535589	888	NRC1 [Solanum lycopersicum] gi|83630761|	0.770	0.203	0.309	1e-12
359474883	874	PREDICTED: probable disease resistance R	0.872	0.234	0.303	1e-12
297744668	1560	unnamed protein product [Vitis vinifera]	0.872	0.131	0.303	1e-12
225465433	908	PREDICTED: disease resistance protein RP	0.855	0.221	0.333	3e-12

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 29  QISTRQLYQLWIAEGFIPDNSEAT----AEKYLEQLINRGFVEVKKRRAGGTIKTCSIRS 84
           +I   +L  LWIAEGF+    E +    AE +LE+L++R  ++V ++R  G IK C I  
Sbjct: 396 EIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRSMIQVAEKRYNGKIKACRIHD 455

Query: 85  RCWPSLLVVALNAEFVF---SPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPHLHSLL 141
                 +  A   +F+    S  +     +R   +R        ++  L    PH  S+L
Sbjct: 456 LLRDLAMSEAKECKFLEILDSTNIDTSVTTR--ARRISVHSSLEEYMKLRHPNPHFRSML 513

Query: 142 YFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSL 201
           +F+   + L    W+ + E  KLLR LDL  +  +    EI  L  LRYL L    L+ L
Sbjct: 514 HFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALPKEIRELVHLRYLGLRRTGLQRL 573

Query: 202 PSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
           PSS  N+  NL TL++  + +  +  + W M  L
Sbjct: 574 PSSIQNF-CNLQTLDIRATKVSRLPIQLWNMPGL 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 29  QISTRQLYQLWIAEGFIPDNSEAT----AEKYLEQLINRGFVEVKKRRAGGTIKTCSIRS 84
           +I   +L  LWIAEGF+    E +    AE +LE+L++R  ++V ++R  G IK C I  
Sbjct: 442 EIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRSMIQVAEKRYNGKIKMCRIHD 501

Query: 85  RCWPSLLVVALNAEFVF---SPTLAPKGESRKNVKRFCALEQQSDFAYLDDYYPHLHSLL 141
                 +  A   +F+    S  +     +R   +R        ++  L    PH  S+L
Sbjct: 502 LLRDLAMSEAKECKFLEILDSTNIDTSVTTR--ARRISVHSSLEEYMKLRHPNPHFRSML 559

Query: 142 YFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSL 201
           +F+   + L    W+ + E  KLLR LDL  +  +    EI  L  LRYL L    L+ L
Sbjct: 560 HFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHALPKEIRELVHLRYLGLRRTGLQRL 619

Query: 202 PSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
           PSS  N+  NL TL++  + +  +  + W M  L
Sbjct: 620 PSSVQNF-CNLQTLDIRATKVSRLPIQLWNMPGL 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444301787|gb|AGD98930.1| NBS type disease resistance protein [Malus x domestica]

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 108/227 (47%), Gaps = 24/227 (10%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIP---DNSEATAEKYLEQLINRGFVEVKKRRAGGTI 77
           PE+Y      S R+L++LWIAEG IP      E  AE+YL +LI+R  V+  +  A   +
Sbjct: 418 PEDYL----FSARKLFRLWIAEGLIPYYDGRMEDLAEEYLNELIDRNMVQAARLSANDRV 473

Query: 78  KTCSIRSRCWPSLLVVALNAEF--------VFSPTLAPKGESRKNVKRFCALEQQSDFAY 129
           K C +        +  A + EF        +FSP   P  +SR   +        S   Y
Sbjct: 474 KHCRLHDLVRDLCISKAKSVEFLYIHLKYGIFSPF--PCSDSR--ARHHAIYSGFSSSPY 529

Query: 130 LDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189
           +    P+L SLL+F  E      I    +C  +KLLR L+L  + L +  S I  +  L+
Sbjct: 530 VST--PNLRSLLFFKVEQIECG-ISLSDVCRRFKLLRVLELEDMKLRRIPSAIGEMIHLK 586

Query: 190 YLKLNIPSLKSLPSSFFNYLSNLYTLN-MPFSDIDHIADEFWKMNKL 235
           YL L   S++SLP     +LSNL TL+ +  + I  + D  WKM  L
Sbjct: 587 YLGLRHCSIESLPEE-IGWLSNLQTLDILENAKICRVPDVLWKMKSL 632

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744337|emb|CBI37307.3| unnamed protein product [Vitis vinifera]

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 108/222 (48%), Gaps = 21/222 (9%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNS----EATAEKYLEQLINRGFVEVKKRRAGGT 76
           P++YT +  I TR    LWIAEGF+        E TAE++L +LI+R  V+V +    G 
Sbjct: 287 PKDYTIKCGILTR----LWIAEGFVKAKRGVTLEDTAEEFLTELIHRSLVQVSQVYIDGN 342

Query: 77  IKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALE-QQSDFAYLD--DY 133
           IK C I       +L  A   E  F   +A  GE+     RF  L  Q S    LD    
Sbjct: 343 IKRCHIHDLMREIILKKA--EELSFCSVMA--GEASCFDGRFRRLSIQNSSNNVLDITSK 398

Query: 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKL 193
             H+ S+  + SE   L     + +   +KLL+ LDLG   L++   ++ NL  LRYL L
Sbjct: 399 KSHIRSIFLYNSEMFSL-----ETLASKFKLLKVLDLGGAPLDRIPEDLGNLFHLRYLSL 453

Query: 194 NIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
               +K LP S    L NL TL++ +S ++ +  E  ++ KL
Sbjct: 454 RKTKVKMLPRS-IGKLQNLQTLDLKYSFVEDLPVEINRLQKL 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 108/227 (47%), Gaps = 34/227 (14%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNS----EATAEKYLEQLINRGFVEVKKRRAGGT 76
           PE+Y    +IS R+L  LW+AEGF+        E  AE YLE+L+ R  ++V  R++ G 
Sbjct: 446 PEDY----EISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVGRSMIQVATRKSNGR 501

Query: 77  IKTCSIR--------SRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFA 128
           IKTC +         S+      +  ++ EF  S        S   V+R   L       
Sbjct: 502 IKTCCVHDLLHELSVSKGKEDQFLDIIHGEFTVS--------SLTRVRR---LAIHLGVP 550

Query: 129 YLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188
                   + SLL F    D  +P  +Q++   +KLLR LDL  + +++  S I NL  L
Sbjct: 551 PTTKNTSKVRSLLCF----DICEP-SFQEL-RKFKLLRILDLEGVYISRLHSSIGNLIHL 604

Query: 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
           RYL L    LK LP S   +L NL TL++  + ++ I    WKM KL
Sbjct: 605 RYLGLRGTWLKKLPPS-IQFLLNLQTLDLRSTLLNPIPIVIWKMQKL 650

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720730|ref|NP_001237442.1| NBS-LRR disease-resistance protein scn3r1 [Glycine max] gi|212293340|gb|ACJ24527.1| NBS-LRR disease-resistance protein scn3r1 [Glycine max]

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 21/230 (9%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNS----------EATAEKYLEQLINRGFVEVKK 70
           PE+Y    +I  +QL QLWI+EG +   +          E  AE+YL++L++R  ++V  
Sbjct: 301 PEDY----KIPVKQLIQLWISEGLLTQETCGSSTNIPEPEYIAEEYLDELVDRSLIQVVS 356

Query: 71  RRAGGTIKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQ-----QS 125
           R + G +KTC I       L +     +  F        + R +  R  +L        S
Sbjct: 357 RTSDGGVKTCRIHD-LLRDLCISESKEDKFFEVCGEVDFQIRDSCPRKLSLHGTLFHFSS 415

Query: 126 DFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENL 185
             A  D       SLL F  E   + P  W+ + + ++L R LDLG + +N   +++E L
Sbjct: 416 SSAVSDYSITGTRSLLCFGQEVYKVKPNHWRWLLKSFRLARVLDLGRMNVNSIPNDLEKL 475

Query: 186 SLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
             LRYL+++  +++++P+S    L NL TL++  S I   + + W++ +L
Sbjct: 476 IHLRYLRIHSYNIETIPASICR-LWNLETLDLRGSPIKSFSGDLWQLKQL 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum] gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum]

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 86/197 (43%), Gaps = 16/197 (8%)

Query: 30  ISTRQLYQLWIAEGFIPDNS----EATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSR 85
           I  R+L +LWIAEGFI        E  AE+YL +L+NR  V V +R   G IKTC +   
Sbjct: 423 IPARKLIRLWIAEGFIQYRGDLSPECKAEEYLNELVNRNLVMVMQRTVDGQIKTCRVHDM 482

Query: 86  ----CWPSLLVVALNAEFVFSPTLAPKGESRKNV---KRFCALEQQSDFAYLDDYYPHLH 138
               CW      A   E +F        +S + V   +R C      +F        H+ 
Sbjct: 483 LYEFCWQE----ATTEENLFHEVKFGGEQSVREVSTHRRLCIHSSVVEFISKKPSGEHVR 538

Query: 139 SLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSL 198
           S L F+ E     P     I + + LLR  D   + +N++  E   L  LRY+  +  S+
Sbjct: 539 SFLCFSPEKIDTPPTVSANISKAFPLLRVFDTESIKINRFCKEFFQLYHLRYIAFSFDSI 598

Query: 199 KSLPSSFFNYLSNLYTL 215
           K +P      L N+ TL
Sbjct: 599 KVIPKH-VGELWNVQTL 614

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474883|ref|XP_003631548.1| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 22/227 (9%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNSEA----TAEKYLEQLINRGFVEVKKRRAGGT 76
           PE+Y     IS+R+L  LW AEGF+P+  +      AE YL +L NR  ++V +R     
Sbjct: 421 PEDYL----ISSRKLLLLWTAEGFVPEQDDGRMKDMAEVYLNELSNRNLIQVVRRSVNAR 476

Query: 77  IKTCSIRSRCWPSLLVVALNAEFV-------FSPTLAPKGESRKNVKRFCALEQQSDFAY 129
           +  C +        +  A    F+        SP+ +    S K+ +R    + +S +A 
Sbjct: 477 VTKCQVHDLVRELAIEKAKEQNFIGTNIADPLSPSTSLSLFSPKSRRRSIYSDFES-YAS 535

Query: 130 LDDYYPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188
           ++   P+L SLL+F   ++     +D+  I + +K+LR LDL  L +    S I  L  L
Sbjct: 536 IEHLTPYLRSLLFFNLGKNCRASQLDF--IAKCFKVLRVLDLEGLEIECLPSIIGELIHL 593

Query: 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
           RYL L    LK LP S  N L +L TL +  +++  + +  WKM  +
Sbjct: 594 RYLGLRHTGLKMLPPSIGN-LRSLQTLEI--NNLRQVPNVIWKMKNM 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744668|emb|CBI37930.3| unnamed protein product [Vitis vinifera]

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 22/227 (9%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNSEA----TAEKYLEQLINRGFVEVKKRRAGGT 76
           PE+Y     IS+R+L  LW AEGF+P+  +      AE YL +L NR  ++V +R     
Sbjct: 377 PEDYL----ISSRKLLLLWTAEGFVPEQDDGRMKDMAEVYLNELSNRNLIQVVRRSVNAR 432

Query: 77  IKTCSIRSRCWPSLLVVALNAEFV-------FSPTLAPKGESRKNVKRFCALEQQSDFAY 129
           +  C +        +  A    F+        SP+ +    S K+ +R    + +S +A 
Sbjct: 433 VTKCQVHDLVRELAIEKAKEQNFIGTNIADPLSPSTSLSLFSPKSRRRSIYSDFES-YAS 491

Query: 130 LDDYYPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188
           ++   P+L SLL+F   ++     +D+  I + +K+LR LDL  L +    S I  L  L
Sbjct: 492 IEHLTPYLRSLLFFNLGKNCRASQLDF--IAKCFKVLRVLDLEGLEIECLPSIIGELIHL 549

Query: 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
           RYL L    LK LP S  N L +L TL +  +++  + +  WKM  +
Sbjct: 550 RYLGLRHTGLKMLPPSIGN-LRSLQTLEI--NNLRQVPNVIWKMKNM 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465433|ref|XP_002265568.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 102/222 (45%), Gaps = 21/222 (9%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNS----EATAEKYLEQLINRGFVEVKKRRAGGT 76
           PE+YT +  I TR    LWIAEGF+        E TAE +L +LI R  V+V      G 
Sbjct: 435 PEDYTIKCGILTR----LWIAEGFVKTKRGVTLEETAEGFLTELIRRSLVQVSDVYIDGN 490

Query: 77  IKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALE-QQSDFAYLD--DY 133
           IK C I       +L  A   E  F   +A  GE+     RF  L  Q S    LD    
Sbjct: 491 IKRCHIHDLMREIILKKA--EELSFFSVMA--GEASCFDGRFRRLSVQNSSNNVLDIPSK 546

Query: 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKL 193
             H+ S+  + SE   L  +        +K L+ LDLG   L +   ++ NL  LRYL L
Sbjct: 547 KSHIRSIFLYNSEMFSLGTL-----ASKFKFLKVLDLGGAPLERIPEDLGNLLHLRYLSL 601

Query: 194 NIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
               ++ LP S    L NL TL++ +S ++ +  E  ++ KL
Sbjct: 602 RKTRVRMLPRS-IGKLQNLQTLDLKYSLVEDLPVEINRLQKL 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.838	0.212	0.248	1.8e-06
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.846	0.238	0.276	8.4e-06
TAIR|locus:2197409	727	LOV1 "LOCUS ORCHESTRATING VICT	0.889	0.287	0.263	5.9e-05
TAIR|locus:2102857	847	AT3G46710 [Arabidopsis thalian	0.829	0.230	0.272	7.2e-05
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.872	0.228	0.260	0.00085

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 54/217 (24%), Positives = 97/217 (44%)

Query:    29 QISTRQLYQLWIAEGFIPD----NSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRS 84
             ++  ++L ++W+A+ F+       +E  A+ YL +L+ R  ++V      G  K   +  
Sbjct:   446 RMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHD 505

Query:    85 RCWPSLLVVALNAEF--VFSPTLA--PKGESRKNV--KRFCALEQQSDFAYLDDYYPHLH 138
               W   L V+    F  V++         E+ +N   +  C  ++ +  +       +LH
Sbjct:   506 VIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRAT---NLH 562

Query:   139 SLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSL 198
             SLL  +S    ++      +     LLRALDL    +++    +  +  L+YL L+   +
Sbjct:   563 SLLVCSSAKHKME------LLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQV 616

Query:   199 KSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
             K LP +F   L NL TLN   S I+ +    WK+ KL
Sbjct:   617 KELPKNFHK-LVNLETLNTKHSKIEELPLGMWKLKKL 652

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 61/221 (27%), Positives = 97/221 (43%)

Query:    21 PEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEK----YLEQLINRGFVEVKKRRAGGT 76
             PE+Y    +I   +L  L +AEGFI  + E   E     Y+E+LI+R  +E   RR  G 
Sbjct:   428 PEDY----EIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAV-RRERGK 482

Query:    77 IKTCSIRSRCWPSLLVVALNAEFV--FSPTLAPKGESRKNVKRFCALEQQSDFAYLDDYY 134
             + +C I        +  +    FV  ++  +A    S    +R     Q   ++      
Sbjct:   483 VMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQ--HSSTTCRREVVHHQFKRYSSEKRKN 540

Query:   135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLN 194
               + S LYF  E DHL  +D++ +    KLLR LD G L L   ++   +L  LRYL ++
Sbjct:   541 KRMRSFLYF-GEFDHLVGLDFETL----KLLRVLDFGSLWLPFKING--DLIHLRYLGID 593

Query:   195 IPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
               S+     +    +S L  L   F   ++  +E   + KL
Sbjct:   594 GNSINDFDIAAI--ISKLRFLQTLFVSDNYFIEETIDLRKL 632

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 60/228 (26%), Positives = 93/228 (40%)

Query:    21 PEEYTNQRQISTRQLYQLWIAEGFIPDNSEATA-----EKYLEQLINRGFVEVKKRRAGG 75
             PE Y    +I  ++L+    AEG I  + + T      E YLE+L  R  + + K     
Sbjct:   312 PEYY----EIHVKRLFNYLAAEGIITSSDDGTTIQDKGEDYLEELARRNMITIDKNYMFL 367

Query:    76 TIKTCSIRSRCWPSLLVVALNAEF--VFSPTLAPKGESRKNVKRFCALEQQSDFAYLD-- 131
               K C +        L  A    F  +F  + A    + +++ +   L      A     
Sbjct:   368 RKKHCQMHDMMREVCLSKAKEENFLEIFKVSTATSAINARSLSKSRRLSVHGGNALPSLG 427

Query:   132 -DYYPHLHSLLYFTSESDHLDPIDWQKIC-EMYKLLRALDLGYLVLN--QYLSEIENLSL 187
                   + SLLYF  E D    ++    C     LLR LDL  +     +  S I +L  
Sbjct:   428 QTINKKVRSLLYFAFE-DEFCILESTTPCFRSLPLLRVLDLSRVKFEGGKLPSSIGDLIH 486

Query:   188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235
             LR+L L+   +  LPSS  N    LY LN+ F+ + H+ +   +M +L
Sbjct:   487 LRFLSLHRAWISHLPSSLRNLKLLLY-LNLGFNGMVHVPNVLKEMQEL 533

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2102857 AT3G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 60/220 (27%), Positives = 94/220 (42%)

Query:    21 PEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEK----YLEQLINRGFVEVKKRRAGGT 76
             PE+Y    ++   +L QL +AEGFI ++ E T E     Y+E L+    VEV KR+ G  
Sbjct:   421 PEDY----EVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVVKRKKG-- 474

Query:    77 IKTCSIRSRCWPSLLVVALNAEFVFSPTLAPKGESRKNVKRFCALEQQSDFAYLDD--YY 134
              K  S R         +  + E  F      +  S  + +    +    D  YL D    
Sbjct:   475 -KLMSFRIHDLVREFTIKKSKELNFVNVYDEQHSSTTSRRE--VVHHLMDDNYLCDRRVN 531

Query:   135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLG--YLVLNQY----LSE-IENLSL 187
               + S L+F    + +  ++   I    KLLR L+LG  + +   Y    L + I  L  
Sbjct:   532 TQMRSFLFFGKRRNDITYVE--TITLKLKLLRVLNLGGLHFICQGYSPWSLPDVIGGLVH 589

Query:   188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD 227
             LRYL +    + +LP  F + L  L TL+   +  + + D
Sbjct:   590 LRYLGIADTVVNNLPD-FISNLRFLQTLDASGNSFERMTD 628

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 0.00085, P = 0.00085
 Identities = 60/230 (26%), Positives = 94/230 (40%)

Query:    24 YTNQRQISTRQLYQLWIAEG------FIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTI 77
             +    +I   +L+  W AEG      +  +    T + Y+E+L+ R  V  ++       
Sbjct:   429 FPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRNMVISERDVMTSRF 488

Query:    78 KTCSIRSRCWPSLLVVALNAEFV-----FSPTLAPK--GESRKNVKRFCALEQQSDFAYL 130
             +TC +        L  A    F+      SPT  P+  G SR    RF  L   +   ++
Sbjct:   489 ETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASR----RF-VLHNPTTL-HV 542

Query:   131 DDYY--PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN--QYLSEIENLS 186
             + Y   P L SL+    +  +   +    I    KLLR LDL        +  S+I  L 
Sbjct:   543 ERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLI 602

Query:   187 LLRYLKLNIPSLKSLPSSFFNYLSNLYT-LNMPFSDIDHIADEFWKMNKL 235
              LRYL L    +  LPSS  N +  +Y  +   F+DI  + + F  M +L
Sbjct:   603 HLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDI-FVPNVFMGMREL 651


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       235   0.00088  113 3  11 22  0.41    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  207 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.81u 0.08s 20.89t   Elapsed:  00:00:01
  Total cpu time:  20.81u 0.08s 20.89t   Elapsed:  00:00:01
  Start:  Fri May 10 19:25:32 2013   End:  Fri May 10 19:25:33 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033834001 SubName- Full=Chromosome undetermined scaffold_70, whole genome shotgun sequence; (897 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.13
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
PLN03150	623	hypothetical protein; Provisional	98.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.64
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.61
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.51
PLN03150	623	hypothetical protein; Provisional	98.49
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.47
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.36
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.35
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.25
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.15
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.15
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.03
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.0
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.99
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.95
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.31
PRK15386	426	type III secretion protein GogB; Provisional	97.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.0
PRK15386	426	type III secretion protein GogB; Provisional	96.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.57
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.98
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.97
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.9
smart00370	26	LRR Leucine-rich repeats, outliers.	94.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.81
smart00370	26	LRR Leucine-rich repeats, outliers.	94.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.25
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.07
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.27
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	85.38
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.87

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-38  Score=296.47  Aligned_cols=220  Identities=26%  Similarity=0.379  Sum_probs=185.2

Q ss_pred             CeeeeeccCCCCc-------cCcCCCCCCCCCCcChHHHHHHHHhcCCCC----C-ChHHHHHHHHHHHHhCCceeeeee
Q 043825            4 PETSTSQWNIPTR-------DEYQPEEYTNQRQISTRQLYQLWIAEGFIP----D-NSEATAEKYLEQLINRGFVEVKKR   71 (235)
Q Consensus         4 p~l~lSY~~Lp~~-------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~----g-~~e~~~~~~~~~Li~r~ll~~~~~   71 (235)
                      |.|++||++||.+       ||+|||||+    |++++||.+||||||+.    + +++++|++|+++|+++||++..+.
T Consensus       399 ~iLklSyd~L~~~lK~CFLycalFPED~~----I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~  474 (889)
T KOG4658|consen  399 PILKLSYDNLPEELKSCFLYCALFPEDYE----IKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD  474 (889)
T ss_pred             HhhhccHhhhhHHHHHHHHhhccCCcccc----cchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence            8899999999976       999999999    99999999999999997    3 899999999999999999998775


Q ss_pred             CCCCceeeEEeChhHHHHHHHhhc-----ccceecC-C--CC-CCCCCCCCCeEEEEEEcCCCCccccccc-CCCcceEE
Q 043825           72 RAGGTIKTCSIRSRCWPSLLVVAL-----NAEFVFS-P--TL-APKGESRKNVKRFCALEQQSDFAYLDDY-YPHLHSLL  141 (235)
Q Consensus        72 ~~~g~~~~~~mhdlv~dla~~~~~-----~e~~~~~-~--~~-~~~~~~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~  141 (235)
                      .  ++..+|+|||+|||+|.++|+     +++++.. +  .. ......+..+||+++..+.... ..... +++++||.
T Consensus       475 ~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~-~~~~~~~~~L~tLl  551 (889)
T KOG4658|consen  475 E--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH-IAGSSENPKLRTLL  551 (889)
T ss_pred             c--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh-ccCCCCCCccceEE
Confidence            4  677889999999999999999     6665552 1  11 1123466789999999988763 33344 88999999


Q ss_pred             EecCCC--CCCCCcchhHHhhccCccCeEEEeCCc-ccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCc
Q 043825          142 YFTSES--DHLDPIDWQKICEMYKLLRALDLGYLV-LNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMP  218 (235)
Q Consensus       142 ~~~~~~--~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~  218 (235)
                      +.++..  ..    ....+|..++.||||||++|. +.++|++|+.|.|||||+++++.++.||.+++ +|+.|++|++.
T Consensus       552 l~~n~~~l~~----is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~-~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  552 LQRNSDWLLE----ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG-NLKKLIYLNLE  626 (889)
T ss_pred             Eeecchhhhh----cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH-HHHhhheeccc
Confidence            998863  22    345679999999999999876 78999999999999999999999999999999 99999999999


Q ss_pred             CC-CCccccHhhcccCCC
Q 043825          219 FS-DIDHIADEFWKMNKL  235 (235)
Q Consensus       219 ~~-~l~~lP~~i~~L~~L  235 (235)
                      .+ .+..+|..+..|++|
T Consensus       627 ~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  627 VTGRLESIPGILLELQSL  644 (889)
T ss_pred             cccccccccchhhhcccc
Confidence            98 566666555546554

>PLN03210 Resistant to P

Probab=99.71  E-value=4.5e-17  Score=159.05  Aligned_cols=203  Identities=14%  Similarity=0.121  Sum_probs=117.5

Q ss_pred             CeeeeeccCCCCc--------cCcCCCCCCCCCCcChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeeCCCC
Q 043825            4 PETSTSQWNIPTR--------DEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGG   75 (235)
Q Consensus         4 p~l~lSY~~Lp~~--------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~~~g   75 (235)
                      +.|++||++|+.+        ||+|+.++.    +   +.|..|+|.+...      ++.-++.|+++||++...     
T Consensus       424 ~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~----~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-----  485 (1153)
T PLN03210        424 KTLRVSYDGLNNKKDKAIFRHIACLFNGEK----V---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-----  485 (1153)
T ss_pred             HHHHHhhhccCccchhhhhheehhhcCCCC----H---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-----
Confidence            5799999999753        899998877    4   3477888887663      222388999999998743     


Q ss_pred             ceeeEEeChhHHHHHHHhhcccc-------eecC-CCC---CCCCCCCCCeEEEEEEcCCCCcccc--ccc--CCC----
Q 043825           76 TIKTCSIRSRCWPSLLVVALNAE-------FVFS-PTL---APKGESRKNVKRFCALEQQSDFAYL--DDY--YPH----  136 (235)
Q Consensus        76 ~~~~~~mhdlv~dla~~~~~~e~-------~~~~-~~~---~~~~~~~~~~r~lsl~~~~~~~~~~--~~~--~~~----  136 (235)
                        ..++|||++|++|+.+++++.       +..+ .+.   .........++.+++..........  ..+  +++    
T Consensus       486 --~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L  563 (1153)
T PLN03210        486 --DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL  563 (1153)
T ss_pred             --CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence              248999999999999987653       1111 000   0000122445555554332221000  001  333    


Q ss_pred             ---------------------------cceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          137 ---------------------------LHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       137 ---------------------------LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                                                 ||.|.+.++...     .+|..| .+.+|+.|++.++.++.+|..+..+.+|+
T Consensus       564 ~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-----~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk  637 (1153)
T PLN03210        564 KFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-----CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLR  637 (1153)
T ss_pred             EEecccccccccceeecCcchhhcCcccEEEEecCCCCC-----CCCCcC-CccCCcEEECcCccccccccccccCCCCC
Confidence                                       444444333322     122222 34566666666666666666666666666


Q ss_pred             EEecccCC-CcccchHHHhcCccccEEeCcCC-CCccccHhhcccCC
Q 043825          190 YLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFS-DIDHIADEFWKMNK  234 (235)
Q Consensus       190 ~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~  234 (235)
                      +|+|+++. +..+|. ++ .+++|++|++++| .+.++|.++++|++
T Consensus       638 ~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~  682 (1153)
T PLN03210        638 NIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNK  682 (1153)
T ss_pred             EEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCC
Confidence            66666553 555553 55 5666666666665 55566665555544

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.13  E-value=1.9e-12  Score=98.40  Aligned_cols=77  Identities=25%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             hHHhhccCccCeEEEeCCccc--ccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccC
Q 043825          156 QKICEMYKLLRALDLGYLVLN--QYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMN  233 (235)
Q Consensus       156 ~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~  233 (235)
                      |.-|+.++.|.+|||++|.+.  .+|..+..+..||-|.|+.|.++-+|..++ +|++||.|.++.|.+-++|.+++.|+
T Consensus        95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg-~lt~lqil~lrdndll~lpkeig~lt  173 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG-KLTNLQILSLRDNDLLSLPKEIGDLT  173 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh-hhcceeEEeeccCchhhCcHHHHHHH
Confidence            344444555555555554443  344444444444444444555555555555 55555555555555555555555444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.00  E-value=1.8e-11  Score=93.15  Aligned_cols=118  Identities=21%  Similarity=0.314  Sum_probs=98.7

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ....+.|+.+..+.... .++.+  +.+|.+|.++++...     .+|..++.++.||.|+++-|.+..+|..+|.++-|
T Consensus        31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            44567788887777653 33444  889999999888886     57788899999999999999888899999999999


Q ss_pred             cEEecccCCCc--ccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          189 RYLKLNIPSLK--SLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       189 r~L~l~~~~l~--~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ..|+|..|++.  .+|..+. .+..|+.|.++.|.++-+|.++++|++|
T Consensus       105 evldltynnl~e~~lpgnff-~m~tlralyl~dndfe~lp~dvg~lt~l  152 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFEILPPDVGKLTNL  152 (264)
T ss_pred             hhhhccccccccccCCcchh-HHHHHHHHHhcCCCcccCChhhhhhcce
Confidence            99999988765  8898888 8888999999999999999999999875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.96  E-value=1.6e-09  Score=104.88  Aligned_cols=116  Identities=17%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             CCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEE
Q 043825          113 KNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYL  191 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L  191 (235)
                      .++|+|.+..+......+...+++|++|.+.++....    ..+..+.++++|++|++++|.+. .+|..++++.+|++|
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             CCCCEEECcCCccccccCccccCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            4455555544433211111114445555554444322    23344455555555555555443 444444455555555


Q ss_pred             ecccCCCc-ccchHHHhcCccccEEeCcCCCCc-cccHhhcccC
Q 043825          192 KLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDID-HIADEFWKMN  233 (235)
Q Consensus       192 ~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~  233 (235)
                      ++++|.+. .+|..++ ++++|++|++++|.+. .+|..+++++
T Consensus       194 ~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        194 TLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             eccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCC
Confidence            55444432 3444444 4444444444444222 3444444333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.93  E-value=2.3e-09  Score=103.87  Aligned_cols=118  Identities=15%  Similarity=0.142  Sum_probs=68.0

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L  188 (235)
                      ...+++|.+..+......+..+  +++|+.|.+.++....    ..|..+.++++|++|++++|.+. .+|..++++.+|
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc----cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence            4456666666665543233333  6677777776665432    34455666666666666666654 456666666666


Q ss_pred             cEEecccCCCc-ccchHHHhcCccccEEeCcCCCCc-cccHhhcccCC
Q 043825          189 RYLKLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDID-HIADEFWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~  234 (235)
                      ++|++++|.+. .+|..++ ++++|++|++++|.+. .+|..++++++
T Consensus       215 ~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~  261 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKN  261 (968)
T ss_pred             cEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCC
Confidence            66666666544 5566666 6666666666666332 45555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.88  E-value=2.2e-10  Score=102.32  Aligned_cols=117  Identities=16%  Similarity=0.217  Sum_probs=65.7

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY  190 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~  190 (235)
                      .++.||++..+.... ..+.+  +++||++.+..+.....   .+|..+..+.-|.+||||.|++...|..+..-+++-.
T Consensus        55 qkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV  130 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV  130 (1255)
T ss_pred             hhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccC---CCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence            345566655554432 22333  66677776666555432   3455555666666666666666666666555555555


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccC
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMN  233 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~  233 (235)
                      |+|++|+|..+|.+++.+|.-|-.|||++|.+..+|+.+.+|.
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~  173 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS  173 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence            6666655655655554455555555555555555555555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.79  E-value=6.8e-10  Score=99.30  Aligned_cols=80  Identities=24%  Similarity=0.178  Sum_probs=45.9

Q ss_pred             chhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccC
Q 043825          154 DWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMN  233 (235)
Q Consensus       154 ~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~  233 (235)
                      .+|..+..+.+|+.+|+|.|.+..+|+.+.++.+||.|+|++|.|++|...++ .-.+|++|+++.|.+..+|..+++|+
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~-~W~~lEtLNlSrNQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG-EWENLETLNLSRNQLTVLPDAVCKLT  291 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHH-HHhhhhhhccccchhccchHHHhhhH
Confidence            34555566666666666666666666666666666666666655555555555 44555555555555555555555544


Q ss_pred             C
Q 043825          234 K  234 (235)
Q Consensus       234 ~  234 (235)
                      +
T Consensus       292 k  292 (1255)
T KOG0444|consen  292 K  292 (1255)
T ss_pred             H
Confidence            3

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=1.1e-08  Score=65.48  Aligned_cols=59  Identities=29%  Similarity=0.340  Sum_probs=50.1

Q ss_pred             CccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHH-HhcCccccEEeCcCCCC
Q 043825          163 KLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDI  222 (235)
Q Consensus       163 ~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l  222 (235)
                      ++|++|++++|.++.+|. .+..+.+|++|++++|.+..+|+.. . .+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~-~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFS-NLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTT-TSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHc-CCCCCCEEeCcCCcC
Confidence            468899999999998874 6788999999999999999888754 5 899999999998854

...

>PLN03150 hypothetical protein; Provisional

Probab=98.70  E-value=3.6e-08  Score=91.17  Aligned_cols=90  Identities=16%  Similarity=0.157  Sum_probs=74.8

Q ss_pred             cceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEEecccCCCc-ccchHHHhcCccccE
Q 043825          137 LHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYLKLNIPSLK-SLPSSFFNYLSNLYT  214 (235)
Q Consensus       137 LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L~l~~~~l~-~lP~~i~~~L~~L~~  214 (235)
                      ++.|.+.++....    .++..+.++++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..++ +|++|++
T Consensus       420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRI  494 (623)
T ss_pred             EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCE
Confidence            5566666655543    56778899999999999999987 78989999999999999999876 7899999 9999999


Q ss_pred             EeCcCCCC-ccccHhhcc
Q 043825          215 LNMPFSDI-DHIADEFWK  231 (235)
Q Consensus       215 L~l~~~~l-~~lP~~i~~  231 (235)
                      |+|++|.+ ..+|..++.
T Consensus       495 L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             EECcCCcccccCChHHhh
Confidence            99999955 488887765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.67  E-value=8.1e-10  Score=94.04  Aligned_cols=92  Identities=21%  Similarity=0.205  Sum_probs=74.6

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcC-CcccCcEEecccCCCcccchHHHhcCccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIE-NLSLLRYLKLNIPSLKSLPSSFFNYLSNL  212 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~-~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L  212 (235)
                      +.+|.-|.+..+...     .+| .|..+..|..|+++.|+++.+|...+ .|.+|..|+++.|++++.|.+++ .|++|
T Consensus       205 l~~L~~LyL~~Nki~-----~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c-lLrsL  277 (565)
T KOG0472|consen  205 LESLELLYLRRNKIR-----FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC-LLRSL  277 (565)
T ss_pred             hhhhHHHHhhhcccc-----cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH-Hhhhh
Confidence            555555555555553     233 67788888888888888888888776 88999999999999999999999 99999


Q ss_pred             cEEeCcCCCCccccHhhccc
Q 043825          213 YTLNMPFSDIDHIADEFWKM  232 (235)
Q Consensus       213 ~~L~l~~~~l~~lP~~i~~L  232 (235)
                      ..||+++|.+..+|.++|+|
T Consensus       278 ~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  278 ERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             hhhcccCCccccCCcccccc
Confidence            99999999999999988887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.64  E-value=2.8e-08  Score=77.07  Aligned_cols=107  Identities=16%  Similarity=0.139  Sum_probs=36.7

Q ss_pred             CCCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhc-CCcc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEI-ENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~  186 (235)
                      .+.+.|.|.+.++.+..  .+.+   +.++++|.+.++.....      +.+..++.|+.|++++|.++.+.+.+ ..++
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp   88 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISEGLDKNLP   88 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-T
T ss_pred             ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccccchHHhCC
Confidence            34456777777776652  2222   56778888877777532      24566788888888888887776554 3577


Q ss_pred             cCcEEecccCCCcccc--hHHHhcCccccEEeCcCCCCcccc
Q 043825          187 LLRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      +|+.|.+++|+|..+-  ..+. .+++|++|++.+|.+.+-+
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGST
T ss_pred             cCCEEECcCCcCCChHHhHHHH-cCCCcceeeccCCcccchh
Confidence            8888888888766443  3455 6778888888887665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.61  E-value=1e-08  Score=87.47  Aligned_cols=115  Identities=23%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             eEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEe
Q 043825          115 VKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLK  192 (235)
Q Consensus       115 ~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~  192 (235)
                      +..+.+..+.... .+..+  ++.+.|..+..+...+    .++..++.++.|.-|+|++|.+..+|...+.+..||.|+
T Consensus       390 Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is----fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln  464 (565)
T KOG0472|consen  390 VTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS----FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN  464 (565)
T ss_pred             eEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc----cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec
Confidence            5555555555431 22222  4444444443333322    455666777777777777777777777777777777777


Q ss_pred             cccCCCcccch-----------------------H-HHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          193 LNIPSLKSLPS-----------------------S-FFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       193 l~~~~l~~lP~-----------------------~-i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++.|++..+|.                       + +. ++.+|.+||+..|.+..+|+.+|++++|
T Consensus       465 lS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~-nm~nL~tLDL~nNdlq~IPp~LgnmtnL  530 (565)
T KOG0472|consen  465 LSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLK-NMRNLTTLDLQNNDLQQIPPILGNMTNL  530 (565)
T ss_pred             ccccccccchHHHhhHHHHHHHHhccccccccChHHhh-hhhhcceeccCCCchhhCChhhccccce
Confidence            76665554443                       3 55 7788888888888888888888888765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.51  E-value=1.2e-07  Score=56.34  Aligned_cols=39  Identities=33%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             cCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcccc
Q 043825          187 LLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      +|++|++++|+++++|+.++ +|++|++|++++|.+.++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~-~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELS-NLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGT-TCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHh-CCCCCCEEEecCCCCCCCc
Confidence            46666666666666666666 6666666666666665554

...

>PLN03150 hypothetical protein; Provisional

Probab=98.49  E-value=3.9e-07  Score=84.40  Aligned_cols=107  Identities=21%  Similarity=0.170  Sum_probs=86.3

Q ss_pred             eEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEE
Q 043825          115 VKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYL  191 (235)
Q Consensus       115 ~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L  191 (235)
                      +..|.+..+......+..+  +++|+.|.+.++....    .+|..+..++.|+.|+|++|.+. .+|+.++++.+|++|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            5556666555543344444  8999999999988764    56788999999999999999988 789999999999999


Q ss_pred             ecccCCCc-ccchHHHhc-CccccEEeCcCC-CCcccc
Q 043825          192 KLNIPSLK-SLPSSFFNY-LSNLYTLNMPFS-DIDHIA  226 (235)
Q Consensus       192 ~l~~~~l~-~lP~~i~~~-L~~L~~L~l~~~-~l~~lP  226 (235)
                      +|++|.+. .+|..++ . +.++..+++.+| .+...|
T Consensus       496 ~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        496 NLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ECcCCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence            99999976 9999998 5 467889999988 454444

>PLN03210 Resistant to P

Probab=98.48  E-value=3.8e-07  Score=90.03  Aligned_cols=109  Identities=21%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-ccccchhcCCcccCc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LNQYLSEIENLSLLR  189 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~Lr  189 (235)
                      +.++|.+.+..+.... .+..+ ..+|+.|.+.++...     .++..+..+++|+.|+|+++. +..+|. ++.+++|+
T Consensus       588 p~~Lr~L~~~~~~l~~-lP~~f~~~~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le  660 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRC-MPSNFRPENLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE  660 (1153)
T ss_pred             CcccEEEEecCCCCCC-CCCcCCccCCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence            3456666665544331 22223 566666666655443     233344556666666666554 444443 55566666


Q ss_pred             EEecccCC-CcccchHHHhcCccccEEeCcCC-CCccccHh
Q 043825          190 YLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFS-DIDHIADE  228 (235)
Q Consensus       190 ~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~  228 (235)
                      +|++++|. +..+|.+++ ++++|+.|++++| .++.+|..
T Consensus       661 ~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             EEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCc
Confidence            66666653 556666666 6666666666665 55566553

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.47  E-value=1.6e-07  Score=72.90  Aligned_cols=85  Identities=19%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhh-ccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICE-MYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL  212 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L  212 (235)
                      ..++|.|.+.++....     + ..++ .+.+|++|++++|.++.++ .+..+.+|+.|++++|.++++++.+.+.+++|
T Consensus        18 ~~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            5577889999888853     2 2344 5789999999999999875 47889999999999999999987664269999


Q ss_pred             cEEeCcCCCCccc
Q 043825          213 YTLNMPFSDIDHI  225 (235)
Q Consensus       213 ~~L~l~~~~l~~l  225 (235)
                      +.|++++|.+.++
T Consensus        91 ~~L~L~~N~I~~l  103 (175)
T PF14580_consen   91 QELYLSNNKISDL  103 (175)
T ss_dssp             -EEE-TTS---SC
T ss_pred             CEEECcCCcCCCh
Confidence            9999999977654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.42  E-value=3.2e-07  Score=54.49  Aligned_cols=41  Identities=27%  Similarity=0.341  Sum_probs=35.6

Q ss_pred             CccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccch
Q 043825          163 KLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPS  203 (235)
Q Consensus       163 ~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~  203 (235)
                      ++|++|++++|.++.+|+.+++|++|++|++++|.++++|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            47899999999999999999999999999999999988763

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.36  E-value=6.2e-07  Score=85.55  Aligned_cols=95  Identities=26%  Similarity=0.301  Sum_probs=76.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc--ccccch-hcCCcccCcEEecccCC-CcccchHHHhcC
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV--LNQYLS-EIENLSLLRYLKLNIPS-LKSLPSSFFNYL  209 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--l~~lp~-~i~~L~~Lr~L~l~~~~-l~~lP~~i~~~L  209 (235)
                      ....|.+.+.++......     .. ...+.|+.|-+.+|.  +..++. .+..+++||.|+|++|. +.+||.+|+ +|
T Consensus       522 ~~~~rr~s~~~~~~~~~~-----~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~L  594 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIA-----GS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-EL  594 (889)
T ss_pred             hhheeEEEEeccchhhcc-----CC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hh
Confidence            667788887777664321     11 334469999999886  555554 47789999999999885 899999999 99


Q ss_pred             ccccEEeCcCCCCccccHhhcccCCC
Q 043825          210 SNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       210 ~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      -+|++|+++++.+..+|.++++|++|
T Consensus       595 i~LryL~L~~t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISHLPSGLGNLKKL  620 (889)
T ss_pred             hhhhcccccCCCccccchHHHHHHhh
Confidence            99999999999999999999998865

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.35  E-value=7.1e-08  Score=79.73  Aligned_cols=93  Identities=19%  Similarity=0.224  Sum_probs=68.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      .+++|.|.++.+....      ...+..+.+|..|||++|.+.++-.+-.+|-+.+.|.|++|.++.+ +.++ +|++|.
T Consensus       306 ~Pkir~L~lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~-KLYSLv  377 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLR-KLYSLV  377 (490)
T ss_pred             ccceeEEeccccceee------ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhH-hhhhhe
Confidence            8889999888877742      2347888899999999998877666666666777777777777766 4667 777788


Q ss_pred             EEeCcCCCCccccH--hhcccCC
Q 043825          214 TLNMPFSDIDHIAD--EFWKMNK  234 (235)
Q Consensus       214 ~L~l~~~~l~~lP~--~i~~L~~  234 (235)
                      .||+++|+++++..  +||+|+.
T Consensus       378 nLDl~~N~Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  378 NLDLSSNQIEELDEVNHIGNLPC  400 (490)
T ss_pred             eccccccchhhHHHhcccccccH
Confidence            88888777766543  5666653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.35  E-value=4.4e-07  Score=57.89  Aligned_cols=60  Identities=28%  Similarity=0.246  Sum_probs=51.0

Q ss_pred             CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCC
Q 043825          135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSL  198 (235)
Q Consensus       135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l  198 (235)
                      ++|+.|.+.++....    ..+..|..+++|++|++++|.++.+| ..+..+.+|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE----IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE----ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc----cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578889998887754    34568899999999999999999776 5789999999999999874

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.25  E-value=1.6e-07  Score=87.37  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=80.9

Q ss_pred             eEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEe
Q 043825          115 VKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLK  192 (235)
Q Consensus       115 ~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~  192 (235)
                      +.-|.+.++......++.+  +++||.|.+..+....    .....+.++..|..|+||||+++.+|..+.++..|++|.
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~----fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS----FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeeccccccc----CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence            3444444555444455555  8899999998887765    345678888999999999999999999998888999998


Q ss_pred             cccCCCcccchHHHhcCccccEEeCcCCCCcc
Q 043825          193 LNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       193 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      ..+|.+..+| .+. +++.|+++|++.|.+.+
T Consensus       437 ahsN~l~~fP-e~~-~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  437 AHSNQLLSFP-ELA-QLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             hcCCceeech-hhh-hcCcceEEecccchhhh
Confidence            8888888888 777 88888888888886543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.24  E-value=2.1e-06  Score=80.67  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=60.5

Q ss_pred             CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY  190 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~  190 (235)
                      +..++.|.+..+...  ..+.. .++|+.|.+.++....     +|..+.  ..|+.|++++|.+..+|..+.  .+|++
T Consensus       198 p~~L~~L~Ls~N~Lt--sLP~~l~~nL~~L~Ls~N~Lts-----LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~  266 (754)
T PRK15370        198 PEQITTLILDNNELK--SLPENLQGNIKTLYANSNQLTS-----IPATLP--DTIQEMELSINRITELPERLP--SALQS  266 (754)
T ss_pred             ccCCcEEEecCCCCC--cCChhhccCCCEEECCCCcccc-----CChhhh--ccccEEECcCCccCcCChhHh--CCCCE
Confidence            445667777666554  22222 5677777777665542     222222  356667777777666666554  35677


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccccH
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  227 (235)
                      |++++|++..+|..+.   .+|++|++++|.+..+|.
T Consensus       267 L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        267 LDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             EECcCCccCccccccC---CCCcEEECCCCccccCcc
Confidence            7777666666666544   266677776666665554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.20  E-value=3.2e-07  Score=85.41  Aligned_cols=91  Identities=26%  Similarity=0.307  Sum_probs=67.1

Q ss_pred             CcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEE
Q 043825          136 HLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTL  215 (235)
Q Consensus       136 ~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L  215 (235)
                      +|++|.+.++...     ..|..+..+.+|+.|.++.|.+.++|.+++++.+|+||.|.+|.+..+|.++. .+++|+.|
T Consensus        46 ~L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~-~lknl~~L  119 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS-ELKNLQYL  119 (1081)
T ss_pred             eeEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH-hhhccccc
Confidence            3777777776665     34566677777778888877777777777777788888888777777888777 77888888


Q ss_pred             eCcCCCCccccHhhccc
Q 043825          216 NMPFSDIDHIADEFWKM  232 (235)
Q Consensus       216 ~l~~~~l~~lP~~i~~L  232 (235)
                      ++++|.+..+|.-|-.+
T Consensus       120 dlS~N~f~~~Pl~i~~l  136 (1081)
T KOG0618|consen  120 DLSFNHFGPIPLVIEVL  136 (1081)
T ss_pred             ccchhccCCCchhHHhh
Confidence            88877777777655443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.19  E-value=7.2e-06  Score=77.17  Aligned_cols=103  Identities=13%  Similarity=0.136  Sum_probs=78.3

Q ss_pred             CeEEEEEEcCCCCcccccc-cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEe
Q 043825          114 NVKRFCALEQQSDFAYLDD-YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLK  192 (235)
Q Consensus       114 ~~r~lsl~~~~~~~~~~~~-~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~  192 (235)
                      +...+.+......  ..+. +.+.++.|.+.++....     ++..+.  .+|+.|++++|.++.+|..+.  .+|+.|+
T Consensus       179 ~~~~L~L~~~~Lt--sLP~~Ip~~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT--TIPACIPEQITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC--cCCcccccCCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCccccCChhhh--ccccEEE
Confidence            3455666554443  2232 36789999999887764     333332  589999999999999998765  4799999


Q ss_pred             cccCCCcccchHHHhcCccccEEeCcCCCCccccHhhc
Q 043825          193 LNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFW  230 (235)
Q Consensus       193 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~  230 (235)
                      +++|.+..+|..+.   .+|++|++++|.+..+|..+.
T Consensus       248 Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~  282 (754)
T PRK15370        248 LSINRITELPERLP---SALQSLDLFHNKISCLPENLP  282 (754)
T ss_pred             CcCCccCcCChhHh---CCCCEEECcCCccCccccccC
Confidence            99999999999877   489999999999888887654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.15  E-value=3.4e-07  Score=81.35  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=40.5

Q ss_pred             hHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhc
Q 043825          156 QKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFW  230 (235)
Q Consensus       156 ~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~  230 (235)
                      +.-+..+..||.|.+..|.+..+|+.++.|+ |..||++.|++..||-.+. +|++||+|-|.+|.++.=|..|+
T Consensus       182 psql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr-~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  182 PSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFR-KMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             hHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhh-hhhhheeeeeccCCCCCChHHHH
Confidence            3344444555555555555555555555443 5556666666666666666 66666666666665555555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.15  E-value=4.5e-06  Score=78.47  Aligned_cols=61  Identities=20%  Similarity=0.044  Sum_probs=31.8

Q ss_pred             cCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchH---HHhc--------------CccccEEeCcCCCCccccH
Q 043825          165 LRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSS---FFNY--------------LSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       165 Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~---i~~~--------------L~~L~~L~l~~~~l~~lP~  227 (235)
                      |+.|++++|.++.+|..   +.+|++|++++|.+..+|..   +. .              ..+|++|++++|.+..+|.
T Consensus       284 L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~-~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        284 LCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELC-KLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT  359 (788)
T ss_pred             cCEEECcCCcccccccc---ccccceeECCCCccccCCCCccccc-ccccccCccccccccccccceEecCCCccCCCCC
Confidence            44444555544444432   24566666666655554431   11 1              1357777777777776665


Q ss_pred             hh
Q 043825          228 EF  229 (235)
Q Consensus       228 ~i  229 (235)
                      ..
T Consensus       360 lp  361 (788)
T PRK15387        360 LP  361 (788)
T ss_pred             CC
Confidence            33

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.15  E-value=1.4e-06  Score=77.88  Aligned_cols=111  Identities=16%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  187 (235)
                      ....+.+|.+..+.+.......+  ++.||+|.++.+....    ...+.|..-.+++.|+|++|.++.+ -..+..|..
T Consensus       123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~----i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns  198 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE----IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS  198 (873)
T ss_pred             cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc----ccCCCCCCCCCceEEeeccccccccccccccccch
Confidence            44557777777776654333333  7778888877776654    2334566667788888888887755 356777888


Q ss_pred             CcEEecccCCCcccchHHHhcCccccEEeCcCCCCccc
Q 043825          188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHI  225 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  225 (235)
                      |..|.|+.|+++.||....++|++|+.|+|..|.++.+
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            88888888888889887774699999999888866544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.03  E-value=3.5e-07  Score=81.26  Aligned_cols=93  Identities=20%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      +-.|.++.+..+...     .++..+.++..|..|||+.|+++.+|..++.|. |+.|-+++|+++.+|+.|+ -+..|.
T Consensus        97 f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig-~~~tl~  169 (722)
T KOG0532|consen   97 FVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIG-LLPTLA  169 (722)
T ss_pred             HHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccc-cchhHH
Confidence            444444544444443     344455555555555555555555555555554 5555555555555555555 555555


Q ss_pred             EEeCcCCCCccccHhhcccC
Q 043825          214 TLNMPFSDIDHIADEFWKMN  233 (235)
Q Consensus       214 ~L~l~~~~l~~lP~~i~~L~  233 (235)
                      .||.+.|.+..+|+.++.|.
T Consensus       170 ~ld~s~nei~slpsql~~l~  189 (722)
T KOG0532|consen  170 HLDVSKNEIQSLPSQLGYLT  189 (722)
T ss_pred             HhhhhhhhhhhchHHhhhHH
Confidence            55555555555555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.00  E-value=8.9e-06  Score=68.71  Aligned_cols=110  Identities=16%  Similarity=0.132  Sum_probs=72.9

Q ss_pred             CCeEEEEEEcCCCCcccc----ccc--C-CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccch
Q 043825          113 KNVKRFCALEQQSDFAYL----DDY--Y-PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLS  180 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~----~~~--~-~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~  180 (235)
                      ..++++.+..+.......    ...  . ++++.|.+.++.........+...+..++.|+.|++++|.+.     .++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            347777777765541111    111  4 788888888877653111124455677778888888888876     3455


Q ss_pred             hcCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCc
Q 043825          181 EIENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       181 ~i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~  223 (235)
                      .+..+.+|++|++++|.+.     .++..+. .+++|++|++++|.+.
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-~~~~L~~L~ls~n~l~  234 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLA-SLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhc-ccCCCCEEecCCCcCc
Confidence            5666678899999888765     3455566 7788999999988665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.99  E-value=7.9e-06  Score=76.86  Aligned_cols=63  Identities=22%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             CccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCc-cccHhh
Q 043825          163 KLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID-HIADEF  229 (235)
Q Consensus       163 ~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i  229 (235)
                      +.|+.|++++|.+..+|...   .+|++|++++|.++.+|.+++ ++.+|++|++++|.+. ..|..+
T Consensus       402 s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~-~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        402 SELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHHh-hccCCCeEECCCCCCCchHHHHH
Confidence            45667777777777666532   357778888888888888888 8888888888888554 444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.95  E-value=1.2e-05  Score=71.98  Aligned_cols=97  Identities=20%  Similarity=0.219  Sum_probs=77.9

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSS-FFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~  211 (235)
                      ..++..|.+..+....    .-...++.++.||+|||+.|.++.+|. ++..=.++++|+|++|+|+.+-.. +. .|.+
T Consensus       124 sghl~~L~L~~N~I~s----v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lns  198 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISS----VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNS  198 (873)
T ss_pred             ccceeEEeeecccccc----ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc-ccch
Confidence            6678888888877765    345778899999999999999997775 455557899999999999977643 45 8889


Q ss_pred             ccEEeCcCCCCccccHhhc-ccCCC
Q 043825          212 LYTLNMPFSDIDHIADEFW-KMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~~i~-~L~~L  235 (235)
                      |.+|.|+.|.+..+|.-.- +|++|
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKL  223 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchh
Confidence            9999999999999997443 36654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.91  E-value=5.7e-06  Score=72.41  Aligned_cols=88  Identities=28%  Similarity=0.343  Sum_probs=45.5

Q ss_pred             CCcceEEEecCCCCCCCCcchhHHhhccC-ccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          135 PHLHSLLYFTSESDHLDPIDWQKICEMYK-LLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      +.+..|.+..+...     .++.....+. +|+.|++++|.+..+|..++.+++|+.|+++.|.+.++|...+ .+.+|+
T Consensus       116 ~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~  189 (394)
T COG4886         116 TNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLN  189 (394)
T ss_pred             cceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hhhhhh
Confidence            34444444444443     2233333342 5555555555555555555555555555555555555555554 555555


Q ss_pred             EEeCcCCCCccccHh
Q 043825          214 TLNMPFSDIDHIADE  228 (235)
Q Consensus       214 ~L~l~~~~l~~lP~~  228 (235)
                      .|++++|.+..+|..
T Consensus       190 ~L~ls~N~i~~l~~~  204 (394)
T COG4886         190 NLDLSGNKISDLPPE  204 (394)
T ss_pred             heeccCCccccCchh
Confidence            555555555555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.91  E-value=7.8e-06  Score=71.55  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=87.5

Q ss_pred             CCeEEEEEEcCCCCccccccc--CC-CcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YP-HLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~-~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      +.+..+.+..+.... ..+..  .+ +++.|.+.++...     .++..+..++.|+.|+++.|.+..+|...+.+..|+
T Consensus       116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             cceeEEecCCccccc-Cccccccchhhcccccccccchh-----hhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence            346666666655542 22222  43 8888888888775     344577889999999999999999998888888999


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      .|++++|.+..+|..+. .+.+|++|.+++|.+.++|..+.++.+
T Consensus       190 ~L~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~~~~~~~~~~~~  233 (394)
T COG4886         190 NLDLSGNKISDLPPEIE-LLSALEELDLSNNSIIELLSSLSNLKN  233 (394)
T ss_pred             heeccCCccccCchhhh-hhhhhhhhhhcCCcceecchhhhhccc
Confidence            99999999999999887 778899999988866667766666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.90  E-value=2.6e-06  Score=70.64  Aligned_cols=108  Identities=15%  Similarity=0.116  Sum_probs=86.4

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ...++|++-+..+...  ...++  +++|.-|.++++...     .+...-.++.+++.|.|++|.++.+. .+++|-.|
T Consensus       305 L~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls-----~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSL  376 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLA-----ECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSL  376 (490)
T ss_pred             hccceeEEecccccee--eehhhhhcccceEeecccchhH-----hhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhh
Confidence            3466788877777655  33334  888888888887775     34566678899999999999998764 47888899


Q ss_pred             cEEecccCCCcccc--hHHHhcCccccEEeCcCCCCccccH
Q 043825          189 RYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       189 r~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~  227 (235)
                      .+|++++|+|..+-  .+|| +|++|+++.|.+|.+..+|+
T Consensus       377 vnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  377 VNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eeccccccchhhHHHhcccc-cccHHHHHhhcCCCccccch
Confidence            99999999998664  5799 99999999999998877765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.87  E-value=2.3e-06  Score=63.17  Aligned_cols=90  Identities=18%  Similarity=0.138  Sum_probs=76.1

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      ...+.+..+.++....    ..+.+-.+++.+..|++++|.+..+|..+..++.||.|+++.|.+...|.-+. .|.+|-
T Consensus        52 ~~el~~i~ls~N~fk~----fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~  126 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKK----FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA-PLIKLD  126 (177)
T ss_pred             CceEEEEecccchhhh----CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH-HHHhHH
Confidence            5567777888877764    33455566778999999999999999999999999999999999999999999 899999


Q ss_pred             EEeCcCCCCccccHh
Q 043825          214 TLNMPFSDIDHIADE  228 (235)
Q Consensus       214 ~L~l~~~~l~~lP~~  228 (235)
                      .|+..+|...++|-.
T Consensus       127 ~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  127 MLDSPENARAEIDVD  141 (177)
T ss_pred             HhcCCCCccccCcHH
Confidence            999999988788754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=4.3e-06  Score=61.75  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             CCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ...+..+++..+.... .++.+   ++-+.+|.+.++...     .+|..+..++.||.|++..|.+...|.-|..|.+|
T Consensus        52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-----dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l  125 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-----DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKL  125 (177)
T ss_pred             CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-----hchHHHhhhHHhhhcccccCccccchHHHHHHHhH
Confidence            3456667787776652 22222   667888888887776     56777999999999999999999999999999999


Q ss_pred             cEEecccCCCcccchHHH
Q 043825          189 RYLKLNIPSLKSLPSSFF  206 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i~  206 (235)
                      -+|+..++.+.++|-.+.
T Consensus       126 ~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  126 DMLDSPENARAEIDVDLF  143 (177)
T ss_pred             HHhcCCCCccccCcHHHh
Confidence            999999998888887754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=1.9e-05  Score=73.68  Aligned_cols=104  Identities=22%  Similarity=0.300  Sum_probs=66.8

Q ss_pred             CCCeEEEEEEcCCCCccccc----ccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCccc
Q 043825          112 RKNVKRFCALEQQSDFAYLD----DYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSL  187 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~----~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~  187 (235)
                      ..++++|.+.+...-...++    .++|.|++|.+.+-.....   .+.....++++|+.||+|++.++.+ ..+++|++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL-SGISRLKN  196 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence            34566666655332111121    1288888888877555321   3456677888888888888888766 66777777


Q ss_pred             CcEEecccCCCcccc--hHHHhcCccccEEeCcCC
Q 043825          188 LRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~  220 (235)
                      |+.|.+++-.+..-.  ..+. +|++|++||+|..
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRD  230 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHh-cccCCCeeecccc
Confidence            777777765555322  3556 7777777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.67  E-value=8.4e-05  Score=62.73  Aligned_cols=111  Identities=14%  Similarity=0.002  Sum_probs=78.9

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CC---CcceEEEecCCCCCCCCcchhHHhhcc-CccCeEEEeCCccc-----ccch
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YP---HLHSLLYFTSESDHLDPIDWQKICEMY-KLLRALDLGYLVLN-----QYLS  180 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~---~LrsL~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~-----~lp~  180 (235)
                      ...++++.+..+.........+  +.   +++.|.+.++.........+...+..+ ++|+.|++++|.++     .++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            4578888888776642222222  33   499999988776421100233456677 89999999999977     4556


Q ss_pred             hcCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCc
Q 043825          181 EIENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       181 ~i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~  223 (235)
                      .+..+.+|++|++++|.+.     .++..+. .+++|+.|++++|.+.
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~  206 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccC
Confidence            6777889999999999876     4555666 7789999999999664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.56  E-value=1.6e-05  Score=68.10  Aligned_cols=89  Identities=21%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEeccc-CCCcccchHHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNI-PSLKSLPSSFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~-~~l~~lP~~i~~~L~~  211 (235)
                      .+....+.+..+....    ..+.+|+.+++||.|||+.|.++.+ |+.+..|..|..|-+.+ |+|+.+|.....+|..
T Consensus        66 P~~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             CCcceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            5555666677676654    4577889999999999999998854 88888888887777766 6799999765448888


Q ss_pred             ccEEeCcCCCCcccc
Q 043825          212 LYTLNMPFSDIDHIA  226 (235)
Q Consensus       212 L~~L~l~~~~l~~lP  226 (235)
                      ||-|.+..|.+.-++
T Consensus       142 lqrLllNan~i~Cir  156 (498)
T KOG4237|consen  142 LQRLLLNANHINCIR  156 (498)
T ss_pred             HHHHhcChhhhcchh
Confidence            888888777655443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.31  E-value=9.6e-05  Score=63.47  Aligned_cols=71  Identities=25%  Similarity=0.217  Sum_probs=59.7

Q ss_pred             hhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccc
Q 043825          155 WQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHI  225 (235)
Q Consensus       155 ~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  225 (235)
                      ....|.++++||+|+|++|+++.+ +.++..+.+++.|.|..|++..+...+..+|..|++|+|.+|.|+.+
T Consensus       266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence            445789999999999999998855 66788899999999999998888777655889999999999988765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.23  E-value=0.00081  Score=58.86  Aligned_cols=94  Identities=15%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             CCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCC-cccccchhcCCcccCcEE
Q 043825          113 KNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYL-VLNQYLSEIENLSLLRYL  191 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~~lp~~i~~L~~Lr~L  191 (235)
                      ...++|.+..+...  .++.+.++|++|.+.++....    .++..+  ...|+.|++++| .+..+|++      |+.|
T Consensus        52 ~~l~~L~Is~c~L~--sLP~LP~sLtsL~Lsnc~nLt----sLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L  117 (426)
T PRK15386         52 RASGRLYIKDCDIE--SLPVLPNELTEITIENCNNLT----TLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL  117 (426)
T ss_pred             cCCCEEEeCCCCCc--ccCCCCCCCcEEEccCCCCcc----cCCchh--hhhhhheEccCcccccccccc------cceE
Confidence            44556666665443  223335567777776644422    233333  246777777777 46666654      4444


Q ss_pred             ecccCC---CcccchHHHhcCc------------------cccEEeCcCCC
Q 043825          192 KLNIPS---LKSLPSSFFNYLS------------------NLYTLNMPFSD  221 (235)
Q Consensus       192 ~l~~~~---l~~lP~~i~~~L~------------------~L~~L~l~~~~  221 (235)
                      .++++.   +..+|+++. .|.                  +|++|++++|.
T Consensus       118 ~L~~n~~~~L~~LPssLk-~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~  167 (426)
T PRK15386        118 EIKGSATDSIKNVPNGLT-SLSINSYNPENQARIDNLISPSLKTLSLTGCS  167 (426)
T ss_pred             EeCCCCCcccccCcchHh-heeccccccccccccccccCCcccEEEecCCC
Confidence            454432   567777766 552                  67788888774

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.00013  Score=63.40  Aligned_cols=110  Identities=18%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             CCCeEEEEEEcCCCCcccccc--c-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc--hhcCCcc
Q 043825          112 RKNVKRFCALEQQSDFAYLDD--Y-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL--SEIENLS  186 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~--~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~  186 (235)
                      ...+.+|.+..+...+.....  . ++.+..|.++.+....    .......-++.|+.|||++|.+-..+  ..++.++
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCccccccccccccccc
Confidence            345666666666655222211  1 7777777777764321    12233455677888888888866555  4577888


Q ss_pred             cCcEEecccCCCccc--chH-----HHhcCccccEEeCcCCCCcccc
Q 043825          187 LLRYLKLNIPSLKSL--PSS-----FFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~l--P~~-----i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      .|+-|+++.|++.++  |+.     .- .+++|++|++..|.+.+.|
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~-~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTH-TFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhc-ccccceeeecccCcccccc
Confidence            888888888887633  433     23 5788899999888776665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.00  E-value=0.00056  Score=64.07  Aligned_cols=87  Identities=23%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc--ccchhcCCcccCcEEecccCCCcccchHHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN--QYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~  211 (235)
                      ..+|+.|.+.|.....  ...+...-..+|.|+.|.+.+-.+.  .+-.-..++++|+.||+|+++++.+ ..|+ +|++
T Consensus       121 r~nL~~LdI~G~~~~s--~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS-~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFS--NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS-RLKN  196 (699)
T ss_pred             HHhhhhcCccccchhh--ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh-cccc
Confidence            6788899887754432  1133344566899999999998764  4445566888999999999999999 8999 9999


Q ss_pred             ccEEeCcCCCCcc
Q 043825          212 LYTLNMPFSDIDH  224 (235)
Q Consensus       212 L~~L~l~~~~l~~  224 (235)
                      ||+|.+++=.+..
T Consensus       197 Lq~L~mrnLe~e~  209 (699)
T KOG3665|consen  197 LQVLSMRNLEFES  209 (699)
T ss_pred             HHHHhccCCCCCc
Confidence            9999887654443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.00  E-value=0.00025  Score=35.31  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=10.3

Q ss_pred             ccEEeCcCCCCccccHhhcc
Q 043825          212 LYTLNMPFSDIDHIADEFWK  231 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~~i~~  231 (235)
                      |++|++++|.++++|+++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTTTTT
T ss_pred             ccEEECCCCcCEeCChhhcC
Confidence            45555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.93  E-value=0.0011  Score=58.07  Aligned_cols=82  Identities=15%  Similarity=0.122  Sum_probs=53.8

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-ccccchhcCCcccCcEEecccC-CCcccchHHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LNQYLSEIENLSLLRYLKLNIP-SLKSLPSSFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~Lr~L~l~~~-~l~~lP~~i~~~L~~  211 (235)
                      +.+++.|.+.++....     +|   .-..+|+.|.+++|. ++.+|+.+.  .+|++|.+++| .+..+|.++.     
T Consensus        51 ~~~l~~L~Is~c~L~s-----LP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe-----  115 (426)
T PRK15386         51 ARASGRLYIKDCDIES-----LP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVR-----  115 (426)
T ss_pred             hcCCCEEEeCCCCCcc-----cC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccc-----
Confidence            6778888888775542     33   112358888888755 667776553  47888888887 5777776544     


Q ss_pred             ccEEeCcCC---CCccccHhhccc
Q 043825          212 LYTLNMPFS---DIDHIADEFWKM  232 (235)
Q Consensus       212 L~~L~l~~~---~l~~lP~~i~~L  232 (235)
                        +|+++++   .+..+|.++..|
T Consensus       116 --~L~L~~n~~~~L~~LPssLk~L  137 (426)
T PRK15386        116 --SLEIKGSATDSIKNVPNGLTSL  137 (426)
T ss_pred             --eEEeCCCCCcccccCcchHhhe
Confidence              4445443   467888877665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.93  E-value=0.00034  Score=61.83  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=36.4

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchH-HHhcCccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSNL  212 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~L  212 (235)
                      +++|+.|.+..+.....      ..+..+..|+.|++++|.+..+.. +..+..|+.+++++|.+..+... .. .+.+|
T Consensus       117 ~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~-~~~~l  188 (414)
T KOG0531|consen  117 LVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDELS-ELISL  188 (414)
T ss_pred             hhcchheeccccccccc------cchhhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhhhh-hccch
Confidence            45555555544444321      123334445555555555443322 22244555555555555444432 23 44555


Q ss_pred             cEEeCcCCCC
Q 043825          213 YTLNMPFSDI  222 (235)
Q Consensus       213 ~~L~l~~~~l  222 (235)
                      +.+.+.+|.+
T Consensus       189 ~~l~l~~n~i  198 (414)
T KOG0531|consen  189 EELDLGGNSI  198 (414)
T ss_pred             HHHhccCCch
Confidence            5555555433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.90  E-value=0.0019  Score=54.73  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=74.0

Q ss_pred             CCCCeEEEEEEcCCCCccccc----cc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLD----DY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYL  179 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~----~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp  179 (235)
                      .+..+|.+-+..+........    .+  .+.+..+.+..+.........+...|..+++|++|||..|.++     .+-
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            566788887777765522111    11  5667777776666543221134567888999999999999876     456


Q ss_pred             hhcCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCC
Q 043825          180 SEIENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDI  222 (235)
Q Consensus       180 ~~i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l  222 (235)
                      +.++.+++||.|+++.|.++     .+-..+....++|++|.+.+|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            66778888999998888665     33344432557788888777754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.85  E-value=0.00018  Score=66.34  Aligned_cols=81  Identities=23%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      ++.+++|.+..+....      ...+..++.|+.|||+.|.+..+|.--..=.+|..|.+++|-+++| -.|. +|++|+
T Consensus       186 l~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie-~LksL~  257 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIE-NLKSLY  257 (1096)
T ss_pred             HHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHH-hhhhhh
Confidence            7788888888877742      3478888899999999998887776322223488899999888877 4677 899999


Q ss_pred             EEeCcCCCC
Q 043825          214 TLNMPFSDI  222 (235)
Q Consensus       214 ~L~l~~~~l  222 (235)
                      .||+++|-+
T Consensus       258 ~LDlsyNll  266 (1096)
T KOG1859|consen  258 GLDLSYNLL  266 (1096)
T ss_pred             ccchhHhhh
Confidence            999998844

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.79  E-value=0.00056  Score=60.47  Aligned_cols=86  Identities=19%  Similarity=0.318  Sum_probs=64.3

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      +.++..+.+.++....     +...+..+.+|++|++++|.+..+.. +..+..|+.|.+++|.+..++. +. .+.+|+
T Consensus        94 ~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~-~~-~l~~L~  165 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISG-LE-SLKSLK  165 (414)
T ss_pred             ccceeeeeccccchhh-----cccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccC-Cc-cchhhh
Confidence            6777778887777753     22336788899999999998876543 5667778999999998887753 33 578889


Q ss_pred             EEeCcCCCCccccH
Q 043825          214 TLNMPFSDIDHIAD  227 (235)
Q Consensus       214 ~L~l~~~~l~~lP~  227 (235)
                      .+++++|.+..++.
T Consensus       166 ~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  166 LLDLSYNRIVDIEN  179 (414)
T ss_pred             cccCCcchhhhhhh
Confidence            99999987776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.75  E-value=0.00039  Score=34.59  Aligned_cols=19  Identities=53%  Similarity=0.744  Sum_probs=10.0

Q ss_pred             CcEEecccCCCcccchHHH
Q 043825          188 LRYLKLNIPSLKSLPSSFF  206 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~~i~  206 (235)
                      |++|++++|.++.+|++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.57  E-value=0.00025  Score=65.35  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             hhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          155 WQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       155 ~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      +..++.-++.|+.|+|+.|++.+.- .+..+.+|+.|||+.|.+..+|.--. .-.+|+.|.+++|.++++- +|.+|++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~-~gc~L~~L~lrnN~l~tL~-gie~Lks  255 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSM-VGCKLQLLNLRNNALTTLR-GIENLKS  255 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccch-hhhhheeeeecccHHHhhh-hHHhhhh
Confidence            4456677788899999999988654 78888999999999999888874321 2235999999999777763 4555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.00068  Score=59.00  Aligned_cols=88  Identities=23%  Similarity=0.157  Sum_probs=56.6

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-ccccchhcCCcccCcEEecccCCCcccc--hHHHhcCc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LNQYLSEIENLSLLRYLKLNIPSLKSLP--SSFFNYLS  210 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~Lr~L~l~~~~l~~lP--~~i~~~L~  210 (235)
                      +++++.|.+.+|.....   .+......+++|.+|+|++|. +..--.+..-+..|+.|+|++|.+-..+  .-++ .|+
T Consensus       196 l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~-~l~  271 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG-TLP  271 (505)
T ss_pred             hhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc-ccc
Confidence            45555555555554321   345566677777777777774 2211122233567888999998877777  5567 888


Q ss_pred             cccEEeCcCCCCccc
Q 043825          211 NLYTLNMPFSDIDHI  225 (235)
Q Consensus       211 ~L~~L~l~~~~l~~l  225 (235)
                      .|..|+++.|.+.++
T Consensus       272 ~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASI  286 (505)
T ss_pred             chhhhhccccCcchh
Confidence            888898888866543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.18  E-value=0.0075  Score=47.61  Aligned_cols=82  Identities=20%  Similarity=0.235  Sum_probs=61.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc--hhcCCcccCcEEecccCCCcccch----HHHh
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL--SEIENLSLLRYLKLNIPSLKSLPS----SFFN  207 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~Lr~L~l~~~~l~~lP~----~i~~  207 (235)
                      +++|.+|.+..+.....    -+..-..+++|.+|.|.+|.+..+-  .-+..++.|+||.+-+|.++..+.    -+. 
T Consensus        63 l~rL~tLll~nNrIt~I----~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~-  137 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRI----DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY-  137 (233)
T ss_pred             ccccceEEecCCcceee----ccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE-
Confidence            88999999998888753    2334455677999999999987543  345667789999999988775543    256 


Q ss_pred             cCccccEEeCcCC
Q 043825          208 YLSNLYTLNMPFS  220 (235)
Q Consensus       208 ~L~~L~~L~l~~~  220 (235)
                      ++++|++||.+.-
T Consensus       138 klp~l~~LDF~kV  150 (233)
T KOG1644|consen  138 KLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcceEeehhhh
Confidence            8899999997653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.15  E-value=0.0061  Score=51.74  Aligned_cols=89  Identities=13%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCc-----ccch
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLK-----SLPS  203 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~-----~lP~  203 (235)
                      .++||++++..+.....+...+...|...+.|..+.++.|.+.     -+-..+..++||+.|+|+.|-++     .+-.
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            7789999998887765443356677888999999999999864     34556788999999999999775     4455


Q ss_pred             HHHhcCccccEEeCcCCCCc
Q 043825          204 SFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       204 ~i~~~L~~L~~L~l~~~~l~  223 (235)
                      .++ .+++|+.|++++|.++
T Consensus       236 aL~-s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  236 ALS-SWPHLRELNLGDCLLE  254 (382)
T ss_pred             Hhc-ccchheeecccccccc
Confidence            666 7889999999999653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.03  E-value=0.0036  Score=28.98  Aligned_cols=16  Identities=25%  Similarity=0.441  Sum_probs=6.0

Q ss_pred             cccEEeCcCCCCcccc
Q 043825          211 NLYTLNMPFSDIDHIA  226 (235)
Q Consensus       211 ~L~~L~l~~~~l~~lP  226 (235)
                      +|++|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4455555555544444

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.003  Score=52.74  Aligned_cols=86  Identities=22%  Similarity=0.174  Sum_probs=61.0

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhc-CCcccCcEEecccCCCc--ccchHHHhcCc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEI-ENLSLLRYLKLNIPSLK--SLPSSFFNYLS  210 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~Lr~L~l~~~~l~--~lP~~i~~~L~  210 (235)
                      .++++-+.+.++....-+  .+...+.+++.|++|+++.|++....++. -.+++|+.|-|.++.+.  ..-..+. .++
T Consensus        70 ~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~-~lP  146 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD-DLP  146 (418)
T ss_pred             hhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh-cch
Confidence            777788877776664211  35566788999999999999877544444 46788999999998754  4445555 777


Q ss_pred             cccEEeCcCCCC
Q 043825          211 NLYTLNMPFSDI  222 (235)
Q Consensus       211 ~L~~L~l~~~~l  222 (235)
                      .++.|.++.|++
T Consensus       147 ~vtelHmS~N~~  158 (418)
T KOG2982|consen  147 KVTELHMSDNSL  158 (418)
T ss_pred             hhhhhhhccchh
Confidence            777777776643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.97  E-value=0.0085  Score=47.30  Aligned_cols=82  Identities=15%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             CcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcC-CcccCcEEecccCCCcccc--hHHHhcCccc
Q 043825          136 HLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIE-NLSLLRYLKLNIPSLKSLP--SSFFNYLSNL  212 (235)
Q Consensus       136 ~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~-~L~~Lr~L~l~~~~l~~lP--~~i~~~L~~L  212 (235)
                      +...+.+.++...      ....|..++.|.+|.+.+|.+..+-+.+. .+.+|..|.|.+|++.++-  ..+. .++.|
T Consensus        43 ~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L  115 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKL  115 (233)
T ss_pred             ccceecccccchh------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc-cCCcc
Confidence            4445555555542      23456677777777777777776544444 3445777777777665442  1233 56677


Q ss_pred             cEEeCcCCCCcc
Q 043825          213 YTLNMPFSDIDH  224 (235)
Q Consensus       213 ~~L~l~~~~l~~  224 (235)
                      ++|.+-+|.+..
T Consensus       116 ~~Ltll~Npv~~  127 (233)
T KOG1644|consen  116 EYLTLLGNPVEH  127 (233)
T ss_pred             ceeeecCCchhc
Confidence            777776665443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.66  E-value=0.0069  Score=28.02  Aligned_cols=16  Identities=50%  Similarity=0.567  Sum_probs=6.9

Q ss_pred             cCcEEecccCCCcccc
Q 043825          187 LLRYLKLNIPSLKSLP  202 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP  202 (235)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555666666555554

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.0018  Score=53.54  Aligned_cols=79  Identities=23%  Similarity=0.263  Sum_probs=58.1

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccch--HHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPS--SFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~--~i~~~L~~  211 (235)
                      +.+++-|.+.++....      .....+|+.|.||.|+-|+++.+- .+..+++|+.|.|+.|.|..+-+  -+. +|++
T Consensus        18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLk-nlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLK-NLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHh-cCch
Confidence            3455667777766642      356788999999999999888663 36777888888888888876643  345 7888


Q ss_pred             ccEEeCcCC
Q 043825          212 LYTLNMPFS  220 (235)
Q Consensus       212 L~~L~l~~~  220 (235)
                      |++|.|..|
T Consensus        90 Lr~LWL~EN   98 (388)
T KOG2123|consen   90 LRTLWLDEN   98 (388)
T ss_pred             hhhHhhccC
Confidence            888888766

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.015  Score=48.64  Aligned_cols=63  Identities=29%  Similarity=0.264  Sum_probs=48.6

Q ss_pred             chhHHhhccCccCeEEEeCCcccc---cchhcCCcccCcEEecccCCCc----ccchHHHhcCccccEEeCcCC
Q 043825          154 DWQKICEMYKLLRALDLGYLVLNQ---YLSEIENLSLLRYLKLNIPSLK----SLPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       154 ~~~~~~~~l~~Lr~L~l~~~~l~~---lp~~i~~L~~Lr~L~l~~~~l~----~lP~~i~~~L~~L~~L~l~~~  220 (235)
                      ....+-...+.++.|||.+|.++.   +-.-+.+|++|++|+++.|.+.    .+|   . .+.+|++|-|.++
T Consensus        62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~-p~~nl~~lVLNgT  131 (418)
T KOG2982|consen   62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---L-PLKNLRVLVLNGT  131 (418)
T ss_pred             hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---c-cccceEEEEEcCC
Confidence            444555678889999999999874   3344568999999999998654    555   2 5678999998887

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.90  E-value=0.024  Score=29.11  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=13.2

Q ss_pred             CccccEEeCcCCCCccccHhh
Q 043825          209 LSNLYTLNMPFSDIDHIADEF  229 (235)
Q Consensus       209 L~~L~~L~l~~~~l~~lP~~i  229 (235)
                      |.+|++|+|++|.+..+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            345666666666666666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.90  E-value=0.024  Score=29.11  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=13.2

Q ss_pred             CccccEEeCcCCCCccccHhh
Q 043825          209 LSNLYTLNMPFSDIDHIADEF  229 (235)
Q Consensus       209 L~~L~~L~l~~~~l~~lP~~i  229 (235)
                      |.+|++|+|++|.+..+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            345666666666666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.81  E-value=0.028  Score=28.81  Aligned_cols=22  Identities=45%  Similarity=0.557  Sum_probs=17.7

Q ss_pred             cccCcEEecccCCCcccchHHH
Q 043825          185 LSLLRYLKLNIPSLKSLPSSFF  206 (235)
Q Consensus       185 L~~Lr~L~l~~~~l~~lP~~i~  206 (235)
                      |.+|++|+|++|.++.+|....
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678888898888888887764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.81  E-value=0.028  Score=28.81  Aligned_cols=22  Identities=45%  Similarity=0.557  Sum_probs=17.7

Q ss_pred             cccCcEEecccCCCcccchHHH
Q 043825          185 LSLLRYLKLNIPSLKSLPSSFF  206 (235)
Q Consensus       185 L~~Lr~L~l~~~~l~~lP~~i~  206 (235)
                      |.+|++|+|++|.++.+|....
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678888898888888887764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.64  E-value=0.021  Score=46.58  Aligned_cols=91  Identities=21%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc--cchhcCCcccCcEEecccCCCcccc---hHHHhc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ--YLSEIENLSLLRYLKLNIPSLKSLP---SSFFNY  208 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~--lp~~i~~L~~Lr~L~l~~~~l~~lP---~~i~~~  208 (235)
                      +++|+.|.++.+......  .+.....++++|++|++++|+++.  --..+..+.+|..|++.+|....+-   ..++.-
T Consensus        64 Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             cchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            778888888777432211  334445666888888888888763  1222455667778888777644332   233325


Q ss_pred             CccccEEeCcCCCCcccc
Q 043825          209 LSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       209 L~~L~~L~l~~~~l~~lP  226 (235)
                      +++|.+||--...-.+.|
T Consensus       142 l~~L~~LD~~dv~~~Ea~  159 (260)
T KOG2739|consen  142 LPSLKYLDGCDVDGEEAP  159 (260)
T ss_pred             hhhhccccccccCCcccc
Confidence            577777765444333444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.25  E-value=0.023  Score=46.44  Aligned_cols=66  Identities=20%  Similarity=0.162  Sum_probs=48.6

Q ss_pred             HHhhccCccCeEEEeCCc--cc-ccchhcCCcccCcEEecccCCCcc---cchHHHhcCccccEEeCcCCCCcc
Q 043825          157 KICEMYKLLRALDLGYLV--LN-QYLSEIENLSLLRYLKLNIPSLKS---LPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       157 ~~~~~l~~Lr~L~l~~~~--l~-~lp~~i~~L~~Lr~L~l~~~~l~~---lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      ..+..++.|+.|.++.|.  .. .++-..-.+.+|++|++++|++..   ++ .+. ++.+|..|++..|....
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~-~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLK-ELENLKSLDLFNCSVTN  130 (260)
T ss_pred             ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhh-hhcchhhhhcccCCccc
Confidence            346778899999999994  33 455555556899999999998763   32 234 78889999999885443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.07  E-value=0.0021  Score=51.86  Aligned_cols=81  Identities=10%  Similarity=-0.057  Sum_probs=68.3

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      ..+...|.+..+...     .+...|+.++.|..||++.+.+..+|+..+.+..++.+++..|..+.+|.+.+ ++++++
T Consensus        41 ~kr~tvld~~s~r~v-----n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~-k~~~~k  114 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-----NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK-KEPHPK  114 (326)
T ss_pred             cceeeeehhhhhHHH-----hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc-ccCCcc
Confidence            666677777666554     34456777888888999999999999999999999999999999999999999 999999


Q ss_pred             EEeCcCC
Q 043825          214 TLNMPFS  220 (235)
Q Consensus       214 ~L~l~~~  220 (235)
                      ++++.+|
T Consensus       115 ~~e~k~~  121 (326)
T KOG0473|consen  115 KNEQKKT  121 (326)
T ss_pred             hhhhccC
Confidence            9999888

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.91  E-value=0.0015  Score=52.64  Aligned_cols=59  Identities=7%  Similarity=-0.190  Sum_probs=41.2

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCC
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPS  197 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~  197 (235)
                      +.++.-|.+..+...     ..|..+.....++.+++..|..+.+|.+.+.+.|++|+++.+|.
T Consensus        64 ~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             HHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            444444555544433     45666777777788888888888888888888888888887775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.27  E-value=0.046  Score=45.91  Aligned_cols=105  Identities=18%  Similarity=0.137  Sum_probs=60.5

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhc---
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEI---  182 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i---  182 (235)
                      .++..+|+.+...+......+  .++|+.|.+..+.....-  ...-.+.+++.|..|++++|.+.     .+-..|   
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            345556666655543222223  778888888776653211  45566788888888888887643     011111   


Q ss_pred             ----------------------CCcccCcEEecccCC-Cc-ccchHHHhcCccccEEeCcCC
Q 043825          183 ----------------------ENLSLLRYLKLNIPS-LK-SLPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       183 ----------------------~~L~~Lr~L~l~~~~-l~-~lP~~i~~~L~~L~~L~l~~~  220 (235)
                                            .+.++|..|+|+.+. ++ ..-..+. +++.||+|.++.|
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRC  348 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhh
Confidence                                  234455666666653 33 3334455 6777777777776

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.21  E-value=0.39  Score=24.77  Aligned_cols=17  Identities=35%  Similarity=0.471  Sum_probs=10.0

Q ss_pred             cCcEEecccCCCcccch
Q 043825          187 LLRYLKLNIPSLKSLPS  203 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP~  203 (235)
                      +|++|++++|++++||+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45566666666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=85.38  E-value=0.12  Score=43.49  Aligned_cols=84  Identities=23%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEEecccCC-Ccccch--HHHhcC
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYLKLNIPS-LKSLPS--SFFNYL  209 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L~l~~~~-l~~lP~--~i~~~L  209 (235)
                      -++++-|.+........   .+...++.+.+|+-|.+.|+.+. .+-..|.+=.+|+.|+++.++ +++.-.  -+. ++
T Consensus       184 rsRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-sc  259 (419)
T KOG2120|consen  184 RSRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SC  259 (419)
T ss_pred             hhhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hh
Confidence            44566666665544321   35566788888888888888876 455667777788888888874 653322  234 67


Q ss_pred             ccccEEeCcCCC
Q 043825          210 SNLYTLNMPFSD  221 (235)
Q Consensus       210 ~~L~~L~l~~~~  221 (235)
                      ..|+.|+|++|.
T Consensus       260 s~L~~LNlsWc~  271 (419)
T KOG2120|consen  260 SRLDELNLSWCF  271 (419)
T ss_pred             hhHhhcCchHhh
Confidence            788888888883

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.87  E-value=1.1  Score=23.13  Aligned_cols=17  Identities=35%  Similarity=0.546  Sum_probs=10.5

Q ss_pred             CccccEEeCcCCCCccc
Q 043825          209 LSNLYTLNMPFSDIDHI  225 (235)
Q Consensus       209 L~~L~~L~l~~~~l~~l  225 (235)
                      |.+|+.|++++|.|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            35667777777765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 14/62 (22%)

Query: 21  PEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIKTC 80
            ++     ++ T+ L  LW  E           E  L++ +N+  +   +    G     
Sbjct: 390 QKDV----KVPTKVLCILWDMETEE-------VEDILQEFVNKSLLFCDRN---GKSFRY 435

Query: 81  SI 82
            +
Sbjct: 436 YL 437

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 165 LRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDH 224
             AL+L  + L Q+  +   LS L+++ ++   L  LP +     + L TL +  + +  
Sbjct: 83  RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ-FAGLETLTLARNPLRA 141

Query: 225 IADEFWKMNKL 235
           +      +N+L
Sbjct: 142 LPASIASLNRL 152

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 165 LRALDLGYLVLNQYLSEIE-----NLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPF 219
           L  L L        L E+       L+ L+YL L   +L++LP   F  L NL  L +  
Sbjct: 107 LHTLHLDR---CG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 220 SDIDHIADE-FWKMNKL 235
           + I  + +  F  ++ L
Sbjct: 163 NRISSVPERAFRGLHSL 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 46/142 (32%)

Query: 115 VKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESD---HLDPIDWQKICEMYKLLRALDLG 171
            K     +Q  +        P ++  L    E++   H      + I + Y + +  D  
Sbjct: 412 HKYSLVEKQPKESTI---SIPSIYLELKVKLENEYALH------RSIVDHYNIPKTFDSD 462

Query: 172 YLVLN---QY--------LSEIEN---LSLLR--YL-------KL-NIPSLKSLPSSFFN 207
            L+     QY        L  IE+   ++L R  +L       K+ +  +  +   S  N
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 208 YLSNL--YTLNMPFSDIDHIAD 227
            L  L  Y          +I D
Sbjct: 523 TLQQLKFYK--------PYICD 536

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.5
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.37
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.29
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.29
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.28
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.25
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.24
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.22
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.22
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.21
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.2
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.1
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.06
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.03
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.03
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.03
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.03
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.03
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.02
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.02
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.02
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.01
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.01
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.01
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.01
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.01
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.01
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.99
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.99
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.98
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.96
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.94
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.92
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.9
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.88
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.86
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.62
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.56
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.41
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.4
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.24
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.99
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.91
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.57
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.52
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.9
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.07
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	81.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	81.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	81.17

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.50  E-value=4.5e-15  Score=133.84  Aligned_cols=85  Identities=21%  Similarity=0.135  Sum_probs=72.0

Q ss_pred             CCeeeeeccCCCCc------------------cCcCCCCCCCCCCcChHHHHHHHHhc--CCCC----C-ChHHHHHHHH
Q 043825            3 RPETSTSQWNIPTR------------------DEYQPEEYTNQRQISTRQLYQLWIAE--GFIP----D-NSEATAEKYL   57 (235)
Q Consensus         3 ~p~l~lSY~~Lp~~------------------cs~fP~d~~~~~~i~~~~Li~~Wiae--G~i~----g-~~e~~~~~~~   57 (235)
                      +++|++||++||.+                  ||+||+|+.    |+    |++|+|+  ||+.    + +++++|+ ||
T Consensus       364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~----i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l  434 (549)
T 2a5y_B          364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVD----IP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL  434 (549)
T ss_dssp             CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCC----EE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred             HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCe----ee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence            57899999999974                  899999999    98    8999999  9997    3 6899998 99


Q ss_pred             HHHHhCCceeeeeeCCCCceeeEEeChhHHHHHHHhhcccce
Q 043825           58 EQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEF   99 (235)
Q Consensus        58 ~~Li~r~ll~~~~~~~~g~~~~~~mhdlv~dla~~~~~~e~~   99 (235)
                      ++|+++||++....+   ...+|+|||+|||+|+.++.++++
T Consensus       435 ~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          435 KRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            999999999987643   445799999999999999987765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.37  E-value=2.2e-12  Score=103.43  Aligned_cols=120  Identities=19%  Similarity=0.178  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  187 (235)
                      .+..+++|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|++|+|++|.++.+|.. +..+.+
T Consensus        38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~----i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  113 (229)
T 3e6j_A           38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA----LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH  113 (229)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC----cChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence            56788999999888775444444  8899999999988764    3345678999999999999999987665 688999


Q ss_pred             CcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccH-hhcccCCC
Q 043825          188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD-EFWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L  235 (235)
                      |++|++++|.+..+|..+. .+++|++|++++|.+..+|. .+..+++|
T Consensus       114 L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  161 (229)
T 3e6j_A          114 LKELFMCCNKLTELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSL  161 (229)
T ss_dssp             CCEEECCSSCCCSCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hCeEeccCCcccccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            9999999999999999999 99999999999998888875 35555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.32  E-value=4e-12  Score=96.70  Aligned_cols=108  Identities=18%  Similarity=0.116  Sum_probs=55.9

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc--hhcCCcccC
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL--SEIENLSLL  188 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L  188 (235)
                      ..++.|.+..+.....  ..+  +++|+.|.+.++....    .++..+..+++|++|++++|.++.+|  ..+..+.+|
T Consensus        49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L  122 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL  122 (168)
T ss_dssp             GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCC
T ss_pred             CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCC
Confidence            3455555555444321  222  5555555555555432    23444455555555555555555443  455555555


Q ss_pred             cEEecccCCCcccch----HHHhcCccccEEeCcCCCCccccH
Q 043825          189 RYLKLNIPSLKSLPS----SFFNYLSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       189 r~L~l~~~~l~~lP~----~i~~~L~~L~~L~l~~~~l~~lP~  227 (235)
                      ++|++++|.+..+|.    .+. .+++|++|++++|.+.++|.
T Consensus       123 ~~L~l~~N~l~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          123 KSLDLFNCEVTNLNDYRESVFK-LLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CEEECCSSGGGTSTTHHHHHHT-TCSSCCEETTEETTSCBCCS
T ss_pred             CEEEeeCCcCcchHHHHHHHHH-hCccCcEecCCCCChhhccc
Confidence            555555555555554    444 55555555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.31  E-value=2.3e-12  Score=96.11  Aligned_cols=118  Identities=18%  Similarity=0.134  Sum_probs=96.4

Q ss_pred             CCCCeEEEEEEcCCCC-ccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcCCcc
Q 043825          111 SRKNVKRFCALEQQSD-FAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~-~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~  186 (235)
                      .+..++++.+..+... ...+...  +++|+.|.+.++....     . ..+..+++|++|++++|.+.. +|..++.+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-----C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-----c-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            4567888888887765 2233333  8999999999887753     2 667889999999999999986 888888899


Q ss_pred             cCcEEecccCCCcccc--hHHHhcCccccEEeCcCCCCccccH----hhcccCCC
Q 043825          187 LLRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIAD----EFWKMNKL  235 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~L  235 (235)
                      +|++|++++|.+..+|  ..++ .+++|++|++++|.+..+|.    .++.+++|
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            9999999999999876  7888 99999999999998888875    56666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.29  E-value=1.7e-11  Score=103.44  Aligned_cols=117  Identities=17%  Similarity=0.086  Sum_probs=80.5

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L  188 (235)
                      ...+++|.+..+... ..+..+  +++|+.|.+.++....     ++..+..+++|++|++++|.+. .+|..++.+.+|
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence            344555555555443 122223  6677777777766652     3445777777888888877644 667777888888


Q ss_pred             cEEecccCC-CcccchHHHhcCccccEEeCcCC-CCccccHhhcccCCC
Q 043825          189 RYLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFS-DIDHIADEFWKMNKL  235 (235)
Q Consensus       189 r~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L  235 (235)
                      ++|++++|. +..+|..++ ++++|++|++++| .++.+|.++++|++|
T Consensus       256 ~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             CEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence            888888765 567888888 8888888888887 667888888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.29  E-value=8.5e-12  Score=105.28  Aligned_cols=117  Identities=16%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHH---------hhccCccCeEEEeCCcccccchh
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKI---------CEMYKLLRALDLGYLVLNQYLSE  181 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~---------~~~l~~Lr~L~l~~~~l~~lp~~  181 (235)
                      ..+++|.+..+... ..+..+  +++|+.|.+.++....    .++..         +..+++|++|++++|.++.+|..
T Consensus       127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~----~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~  201 (328)
T 4fcg_A          127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT----ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS  201 (328)
T ss_dssp             TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC----CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred             CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc----ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence            34555555555444 122222  5555555555543322    12222         23366666666666666666666


Q ss_pred             cCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC-CCccccHhhcccCCC
Q 043825          182 IENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS-DIDHIADEFWKMNKL  235 (235)
Q Consensus       182 i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L  235 (235)
                      ++.+.+|++|++++|.+..+|..++ ++++|++|++++| ....+|..++.+++|
T Consensus       202 l~~l~~L~~L~L~~N~l~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             GGGCTTCCEEEEESSCCCCCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hcCCCCCCEEEccCCCCCcCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence            6667777777777776666766666 6777777777766 445666666555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.29  E-value=9.1e-12  Score=99.22  Aligned_cols=120  Identities=17%  Similarity=0.153  Sum_probs=95.7

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  187 (235)
                      .+..++.|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|++|+|++|.++.+|.. +..+.+
T Consensus        30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~  105 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS  105 (220)
T ss_dssp             CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence            45678999988887764333344  8899999999888764    3467889999999999999999988876 578999


Q ss_pred             CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCccccHh-hcccCCC
Q 043825          188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      |++|+|++|.+..++ ..+. .+++|++|+|++|.+..+|.. +..+++|
T Consensus       106 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B          106 LQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            999999999998875 5677 899999999999988888763 5555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.29  E-value=1.2e-11  Score=103.58  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=91.1

Q ss_pred             CCeEEEEEEcCCCCc--cccccc--CCCcceEEEec-CCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcc
Q 043825          113 KNVKRFCALEQQSDF--AYLDDY--YPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLS  186 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~--~~~~~~--~~~LrsL~~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~  186 (235)
                      .+++++.+..+....  ..+..+  +++|+.|.+.+ +....    ..+..+.++++|++|++++|.+. .+|..++.+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            578888888877664  344444  88899998884 55433    45667888888888888888887 7788888888


Q ss_pred             cCcEEecccCCCc-ccchHHHhcCccccEEeCcCCCCc-cccHhhcccC
Q 043825          187 LLRYLKLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDID-HIADEFWKMN  233 (235)
Q Consensus       187 ~Lr~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~  233 (235)
                      +|++|++++|.+. .+|..++ ++++|++|++++|.+. .+|..++++.
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             CCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhh
Confidence            8888888888877 7888888 8888888888888776 7888887765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.28  E-value=9.9e-12  Score=99.01  Aligned_cols=120  Identities=14%  Similarity=0.107  Sum_probs=88.2

Q ss_pred             CCCCeEEEEEEcCCCCccccc-cc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcc
Q 043825          111 SRKNVKRFCALEQQSDFAYLD-DY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~  186 (235)
                      .+..+++|.+..+........ .+  +++|+.|.+.++....    ..+..|..+++|+.|++++|.++.+|. .+..+.
T Consensus        30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  105 (220)
T 2v70_A           30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE  105 (220)
T ss_dssp             CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred             CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence            345567888877776643222 23  8888888888877754    334567888888888888888886654 478888


Q ss_pred             cCcEEecccCCCccc-chHHHhcCccccEEeCcCCCCccc-cHhhcccCCC
Q 043825          187 LLRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHI-ADEFWKMNKL  235 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L  235 (235)
                      +|++|++++|.+..+ |..+. .+++|++|++++|.+..+ |..+..+++|
T Consensus       106 ~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  155 (220)
T 2v70_A          106 SLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSL  155 (220)
T ss_dssp             SCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred             CCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence            888888888888877 45677 888888888888887777 5666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.27  E-value=1.8e-11  Score=96.22  Aligned_cols=120  Identities=18%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  187 (235)
                      ....+++|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|++|++++|.+..+|.. +..+.+
T Consensus        26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  101 (208)
T 2o6s_A           26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS----LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ  101 (208)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc----cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence            45577888887776653333223  7888888888776654    3344567788888888888888776654 578888


Q ss_pred             CcEEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHh-hcccCCC
Q 043825          188 LRYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      |++|++++|.+..+|.. +. ++++|++|++++|.+..+|.. +.++++|
T Consensus       102 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            88888888888877765 46 788888888888877777664 4555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.25  E-value=1.1e-11  Score=95.16  Aligned_cols=116  Identities=12%  Similarity=0.102  Sum_probs=85.2

Q ss_pred             CCCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhc-CCcc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEI-ENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~  186 (235)
                      ....++.+.+..+....  .+..   .++|+.|.+.++....     + ..+..+++|+.|++++|.+..+|+.+ +.+.
T Consensus        17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            45667788877776652  2223   4488888888877652     3 45677888888888888888777554 7788


Q ss_pred             cCcEEecccCCCcccch--HHHhcCccccEEeCcCCCCccccHh----hcccCCC
Q 043825          187 LLRYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDIDHIADE----FWKMNKL  235 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP~~----i~~L~~L  235 (235)
                      +|++|++++|.+..+|.  .++ .+++|++|++++|.+..+|..    ++.+++|
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCcc
Confidence            88888888888888887  777 888888888888877777764    6666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.24  E-value=6.3e-12  Score=116.82  Aligned_cols=105  Identities=19%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             CCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEE
Q 043825          113 KNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYL  191 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L  191 (235)
                      ..++.|.+..+.......... +++|++|.+.++...     .+|..|.++++|++|+|++|.++.+|..++.|.+|++|
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            445555555554442111112 566666666655554     23445566666666666666666666666666666666


Q ss_pred             ecccCCCcccchHHHhcCccccEEeCcCCCCc
Q 043825          192 KLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       192 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  223 (235)
                      +|++|.++.+|.+++ +|++|++|+|++|.+.
T Consensus       299 ~L~~N~l~~lp~~~~-~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             ECCSSCCCCCCSSTT-SCTTCCCEECTTSCCC
T ss_pred             ECCCCCCCccChhhh-cCCCccEEeCCCCccC
Confidence            666666666666666 6666666666666544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.24  E-value=3.5e-11  Score=94.01  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=71.4

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L  188 (235)
                      ..+++++.+..+...  ..+.+  +++|+.|.+.++....    ..+..+..+++|++|++++|.+. ..|..++.+++|
T Consensus        65 l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           65 AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTS----DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBG----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCc----ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            445666666666443  22223  6677777776665532    23445566777777777777766 356667777777


Q ss_pred             cEEecccCC-CcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          189 RYLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       189 r~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++|++++|. +..+| .+. .+++|++|++++|.+..+| .+..+++|
T Consensus       139 ~~L~L~~n~~i~~~~-~l~-~l~~L~~L~l~~n~i~~~~-~l~~l~~L  183 (197)
T 4ezg_A          139 NSIDLSYNGAITDIM-PLK-TLPELKSLNIQFDGVHDYR-GIEDFPKL  183 (197)
T ss_dssp             CEEECCSCTBCCCCG-GGG-GCSSCCEEECTTBCCCCCT-TGGGCSSC
T ss_pred             CEEEccCCCCccccH-hhc-CCCCCCEEECCCCCCcChH-HhccCCCC
Confidence            777777776 66666 566 6777777777777666665 45555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=2.5e-11  Score=98.35  Aligned_cols=118  Identities=21%  Similarity=0.223  Sum_probs=78.1

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  188 (235)
                      ...+++|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|+.|++++|.++.+|.. +..+.+|
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  133 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS----LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL  133 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc----cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence            3556666666665543232223  6677777776666653    3345567777788888888777766654 4677788


Q ss_pred             cEEecccCCCcccch-HHHhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825          189 RYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDHIAD-EFWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~  234 (235)
                      ++|++++|.+..+|. .+. .+++|++|++++|.+..+|. .+..+++
T Consensus       134 ~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          134 KELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             cEEECcCCcCCccCHHHcC-cCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence            888888888777776 466 77888888888887777665 4444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=2.6e-11  Score=98.23  Aligned_cols=118  Identities=19%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L  188 (235)
                      +..+++|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|++|++++|.+..+|. .+..+.+|
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  109 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT----LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL  109 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc----cCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence            3456666666555543222223  5666666666655543    233445666666666666666665543 34566666


Q ss_pred             cEEecccCCCcccchHH-HhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825          189 RYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIAD-EFWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~  234 (235)
                      ++|++++|.+..+|... . .+++|++|++++|.+..+|. .++.+++
T Consensus       110 ~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A          110 DKLYLGGNQLKSLPSGVFD-RLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEcCCCcCCCcChhHhc-cCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            66666666666666553 4 56666666666666666654 3444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.22  E-value=1e-10  Score=91.30  Aligned_cols=114  Identities=10%  Similarity=0.102  Sum_probs=95.4

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~~L  188 (235)
                      ...++++.+..+....  .+.+  +++|+.|.+.++...      ....+..+++|+.|++++|.+.. .|..++.+++|
T Consensus        43 l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~l~~n~~~------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           43 MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHTCCEEEEESSCCSC--CTTGGGCTTCSEEEEESCCCS------CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             cCCccEEeccCCCccC--hHHHhcCCCCCEEEccCCCCC------cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            4568899999887762  2234  999999999998553      23478899999999999999984 78899999999


Q ss_pred             cEEecccCCCcc-cchHHHhcCccccEEeCcCCC-CccccHhhcccCCC
Q 043825          189 RYLKLNIPSLKS-LPSSFFNYLSNLYTLNMPFSD-IDHIADEFWKMNKL  235 (235)
Q Consensus       189 r~L~l~~~~l~~-lP~~i~~~L~~L~~L~l~~~~-l~~lP~~i~~L~~L  235 (235)
                      ++|++++|.+.. .|..++ ++++|++|++++|. +..+| .+..+++|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~-~l~~l~~L  161 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM-PLKTLPEL  161 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred             CEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence            999999999884 788899 99999999999996 99998 57777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.22  E-value=5.1e-11  Score=90.51  Aligned_cols=118  Identities=17%  Similarity=0.091  Sum_probs=99.0

Q ss_pred             CCCCeEEEEEEcCCCC-ccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcCCcc
Q 043825          111 SRKNVKRFCALEQQSD-FAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~-~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~  186 (235)
                      .+..+++|.+..+... ...+..+  +++|+.|.+.++....     . ..+..+++|++|++++|.+.. +|..+..+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-----C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-----h-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            5678999999888765 2233333  8999999999988763     3 677899999999999999986 788888899


Q ss_pred             cCcEEecccCCCcccc--hHHHhcCccccEEeCcCCCCccccH----hhcccCCC
Q 043825          187 LLRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIAD----EFWKMNKL  235 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~L  235 (235)
                      +|++|++++|.+..+|  ..+. .+++|++|++++|.+..+|.    .+..+++|
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCEEeccCCccCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            9999999999999987  7888 99999999999999888886    67777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.22  E-value=1.8e-11  Score=110.97  Aligned_cols=120  Identities=18%  Similarity=0.078  Sum_probs=76.8

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  187 (235)
                      .+..++++.+..+.........+  +++|++|.+.++....    ..+..|.++++|++|++++|.+..+ |..++.+.+
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            44667777777766653333333  6777777777665543    2345567777777777777776655 666777777


Q ss_pred             CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCc--cccHhhcccCCC
Q 043825          188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDID--HIADEFWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~L  235 (235)
                      |++|++++|.+..+| ..++ ++++|++|++++|.+.  .+|..++++++|
T Consensus       106 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  155 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNL  155 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred             CCEEEccCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence            777777777766665 4566 6777777777777554  456666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.21  E-value=6e-11  Score=94.98  Aligned_cols=97  Identities=20%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchHH-HhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSSF-FNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~  211 (235)
                      .++++.|.+.++....    ..+..|..+++|+.|+|++|.+..+|.. +..+.+|++|+|++|.++.+|... . .+++
T Consensus        39 ~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~  113 (229)
T 3e6j_A           39 PTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD-RLVH  113 (229)
T ss_dssp             CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred             CCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC-cchh
Confidence            7899999999988875    4467789999999999999999988754 689999999999999999998775 6 8999


Q ss_pred             ccEEeCcCCCCccccHhhcccCCC
Q 043825          212 LYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      |++|++++|.+..+|..+..+++|
T Consensus       114 L~~L~Ls~N~l~~lp~~~~~l~~L  137 (229)
T 3e6j_A          114 LKELFMCCNKLTELPRGIERLTHL  137 (229)
T ss_dssp             CCEEECCSSCCCSCCTTGGGCTTC
T ss_pred             hCeEeccCCcccccCcccccCCCC
Confidence            999999999999999988888765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.20  E-value=2.9e-11  Score=109.46  Aligned_cols=120  Identities=18%  Similarity=0.084  Sum_probs=91.8

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~  187 (235)
                      .+..+++|.+..+.........+  +++|+.|.+.++....    ..+..|.++++|++|+|++|.++.+|. .+..+.+
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            56788899888887764333444  8889999998887753    335578888899999999988887764 5788888


Q ss_pred             CcEEecccCCCcccchH-HHhcCccccEEeCcCCCCc--cccHhhcccCCC
Q 043825          188 LRYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDID--HIADEFWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~L  235 (235)
                      |++|++++|.++.+|+. ++ ++++|++|++++|.+.  .+|..++.+++|
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  175 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNL  175 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             CCEEECCCCcCCCCChhhhh-cCcccCeeccccCccccCCCchhhccchhh
Confidence            99999988888888764 67 8888888888888665  356666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.17  E-value=8.6e-11  Score=91.72  Aligned_cols=104  Identities=20%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L  188 (235)
                      +..++.|.+..+.... .+..+  +++|+.|.+.++....    ..+..|..++.|+.|+|++|.++.+|. .+..+.+|
T Consensus        30 ~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIST----LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL  104 (193)
T ss_dssp             CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCE----eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence            4456666666665542 22233  6667777666666653    234456666777777777777665543 46666677


Q ss_pred             cEEecccCCCcccchH-HHhcCccccEEeCcCCC
Q 043825          189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSD  221 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~  221 (235)
                      ++|+|++|.+..+|.. +. .+++|++|++++|.
T Consensus       105 ~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          105 RLLSLHGNDISVVPEGAFN-DLSALSHLAIGANP  137 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTT-TCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCeeChhhhh-cCccccEEEeCCCC
Confidence            7777777766666654 44 66677777776663

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.17  E-value=2.2e-11  Score=113.19  Aligned_cols=96  Identities=25%  Similarity=0.159  Sum_probs=88.4

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      ++.|+.|.+.++...     .++..+.++++|+.|+|++|.++.+|..++.|.+|++|+|++|.++.+|.+++ +|.+|+
T Consensus       223 l~~L~~L~Ls~n~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~  296 (727)
T 4b8c_D          223 DQLWHALDLSNLQIF-----NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-SCFQLK  296 (727)
T ss_dssp             CCCCCEEECTTSCCS-----CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG-GGTTCS
T ss_pred             CCCCcEEECCCCCCC-----CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc-CCCCCC
Confidence            789999999988876     34556669999999999999999999999999999999999999999999999 999999


Q ss_pred             EEeCcCCCCccccHhhcccCCC
Q 043825          214 TLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       214 ~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +|+|++|.+..+|.++++|++|
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L  318 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNL  318 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTC
T ss_pred             EEECCCCCCCccChhhhcCCCc
Confidence            9999999999999999988875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.16  E-value=5.9e-11  Score=107.34  Aligned_cols=107  Identities=14%  Similarity=0.042  Sum_probs=92.4

Q ss_pred             CeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEE
Q 043825          114 NVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYL  191 (235)
Q Consensus       114 ~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L  191 (235)
                      .++.|.+..+....  .+.+  +++|+.|.+.++...     .+|..+..+++|+.|+|++|.++.+| .++.+++|++|
T Consensus       442 ~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSS--CCCGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCC--CcCccccccCcEeecCccccc-----ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEE
Confidence            47778888777663  2235  899999999998886     45678999999999999999999988 89999999999


Q ss_pred             ecccCCCccc--chHHHhcCccccEEeCcCCCCccccHhh
Q 043825          192 KLNIPSLKSL--PSSFFNYLSNLYTLNMPFSDIDHIADEF  229 (235)
Q Consensus       192 ~l~~~~l~~l--P~~i~~~L~~L~~L~l~~~~l~~lP~~i  229 (235)
                      +|++|.++.+  |..++ .+++|++|++++|.+..+|+.+
T Consensus       514 ~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             ECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCT
T ss_pred             ECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCCccHH
Confidence            9999999988  89999 9999999999999888877644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.16  E-value=5.6e-11  Score=107.50  Aligned_cols=93  Identities=16%  Similarity=0.130  Sum_probs=83.9

Q ss_pred             CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccE
Q 043825          135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYT  214 (235)
Q Consensus       135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~  214 (235)
                      ..|+.|.+.++....     +|. +..+++|+.|+|++|.++.+|..++.+.+|++|+|++|.++.+| .++ ++++|++
T Consensus       441 ~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~-~l~~L~~  512 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA-NLPRLQE  512 (567)
T ss_dssp             TTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT-TCSSCCE
T ss_pred             cCceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccC-CCCCCcE
Confidence            467889888887763     444 89999999999999999999999999999999999999999999 899 9999999


Q ss_pred             EeCcCCCCccc--cHhhcccCCC
Q 043825          215 LNMPFSDIDHI--ADEFWKMNKL  235 (235)
Q Consensus       215 L~l~~~~l~~l--P~~i~~L~~L  235 (235)
                      |+|++|.+..+  |..++.|++|
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTC
T ss_pred             EECCCCCCCCCCCcHHHhcCCCC
Confidence            99999999888  8999988875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=9e-11  Score=90.12  Aligned_cols=92  Identities=18%  Similarity=0.139  Sum_probs=80.2

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSS-FFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~  211 (235)
                      .++++.|.+.++....    ..+..|..+++|+.|+|++|.++.+|.. +..+.+|++|+|++|.+..+|.. +. .+++
T Consensus        32 ~~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~  106 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD-NLKS  106 (174)
T ss_dssp             CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred             CCCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhc-cccC
Confidence            7899999999988865    3467889999999999999999988876 58999999999999999999987 77 9999


Q ss_pred             ccEEeCcCCCCccccHhhc
Q 043825          212 LYTLNMPFSDIDHIADEFW  230 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~~i~  230 (235)
                      |++|++++|.+...|..+.
T Consensus       107 L~~L~L~~N~~~c~~~~~~  125 (174)
T 2r9u_A          107 LTHIYLYNNPWDCECRDIM  125 (174)
T ss_dssp             CSEEECCSSCBCTTBGGGH
T ss_pred             CCEEEeCCCCcccccccHH
Confidence            9999999998877665443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.16  E-value=6.4e-11  Score=106.29  Aligned_cols=118  Identities=18%  Similarity=0.094  Sum_probs=56.8

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L  188 (235)
                      +..+++|.+..+.........+  +++|++|.+.++....    ..+..|.++++|++|++++|.+..+| ..++.+.+|
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            4456666665555442222222  5566666665554432    22334555555555555555554333 344555555


Q ss_pred             cEEecccCCCcccch-HHHhcCccccEEeCcCCCCcc--ccHhhcccCC
Q 043825          189 RYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDH--IADEFWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~--lP~~i~~L~~  234 (235)
                      ++|++++|.+..+|. .++ ++++|++|++++|.+..  +|..++++++
T Consensus       103 ~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~  150 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             ccccccccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCC
Confidence            555555555444443 344 45555555555554332  3444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.15  E-value=1.4e-10  Score=94.83  Aligned_cols=118  Identities=20%  Similarity=0.274  Sum_probs=71.0

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  188 (235)
                      ...+++|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|+.|++++|.+..+|.. +..+.+|
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS----LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe----eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence            3455666665555442222222  5666666666655543    2334556677777777777777666544 5667777


Q ss_pred             cEEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHh-hcccCC
Q 043825          189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADE-FWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~  234 (235)
                      ++|++++|.+..+|.. +. ++++|++|++++|.+..+|.. +..+++
T Consensus       160 ~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccC
Confidence            7777777777766654 45 677777777777766666653 344443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.15  E-value=1.5e-10  Score=94.73  Aligned_cols=117  Identities=18%  Similarity=0.214  Sum_probs=70.1

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr  189 (235)
                      ..+++|.+..+.........+  +++|++|.+.++....    ..+..|..+++|+.|++++|.+..+|. .++.+.+|+
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  136 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA----LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT  136 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC----CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc----CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence            455555555544432122222  5566666666555543    223455667777777777777665543 456777777


Q ss_pred             EEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHh-hcccCC
Q 043825          190 YLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADE-FWKMNK  234 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~  234 (235)
                      +|++++|.+..+|.. +. .+++|++|++++|.+..+|.. +.++++
T Consensus       137 ~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          137 YLSLGYNELQSLPKGVFD-KLTSLKELRLYNNQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             EEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             EEECCCCcCCccCHhHcc-CCcccceeEecCCcCcEeChhHhccCCC
Confidence            777777777777665 45 777777777777777766653 444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.15  E-value=4.4e-11  Score=89.05  Aligned_cols=97  Identities=19%  Similarity=0.204  Sum_probs=82.8

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcc-cchHHHhcCccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKS-LPSSFFNYLSNL  212 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~-lP~~i~~~L~~L  212 (235)
                      .++++.|.+.++.....   .++..+..+++|+.|++++|.+..+ ..++.+.+|++|++++|.+.. +|..++ ++++|
T Consensus        16 ~~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTC
T ss_pred             CccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCC
Confidence            57899999988876511   3456778999999999999999877 889999999999999999987 888888 89999


Q ss_pred             cEEeCcCCCCcccc--HhhcccCCC
Q 043825          213 YTLNMPFSDIDHIA--DEFWKMNKL  235 (235)
Q Consensus       213 ~~L~l~~~~l~~lP--~~i~~L~~L  235 (235)
                      ++|++++|.+..+|  ..++.+++|
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCC
Confidence            99999999988876  677777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.14  E-value=9.4e-11  Score=96.05  Aligned_cols=109  Identities=19%  Similarity=0.138  Sum_probs=61.7

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr  189 (235)
                      ..+++|.+..+.........+  +++|+.|.+.++....    ..+..+.++++|+.|++++|.+..++. .++.+.+|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc----cChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            345555555444432222222  5555555555554432    223445666666666666666655443 466666677


Q ss_pred             EEecccCCCcc--cchHHHhcCccccEEeCcCCCCcccc
Q 043825          190 YLKLNIPSLKS--LPSSFFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       190 ~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      +|++++|.+..  +|..+. ++++|++|++++|.+..+|
T Consensus       128 ~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEEC
T ss_pred             EEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCC
Confidence            77777766654  566666 6777777777777666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.14  E-value=1.7e-10  Score=95.71  Aligned_cols=119  Identities=18%  Similarity=0.039  Sum_probs=84.1

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  187 (235)
                      ....++.|.+..+.... .+...  +++|+.|.+.++....    ..+..|..+++|+.|++++|.+..+|.. +..+.+
T Consensus        75 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~----l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS----LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (290)
T ss_dssp             CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCC----CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcc----cCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence            44566777776666552 22222  7778888887777654    2345677888888888888888766654 567888


Q ss_pred             CcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      |++|++++|.++.+|..+..++++|++|++++|.+..+|.++..+.+
T Consensus       150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~  196 (290)
T 1p9a_G          150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL  196 (290)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC
T ss_pred             CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccccc
Confidence            88888888888888876532688888888888888888877766544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=1.7e-10  Score=88.37  Aligned_cols=111  Identities=16%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  187 (235)
                      ....+++|.+..+.........+  +++|+.|.+.++....    ..+..+..+++|+.|++++|.++.+|.. +..+.+
T Consensus        26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE----eChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence            45678888888877653333333  7889999988887764    3345578888999999999998877664 678889


Q ss_pred             CcEEecccCCCcccchHH-HhcCccccEEeCcCCCCcccc
Q 043825          188 LRYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      |++|++++|.+..+|..+ . .+++|++|++++|.+...+
T Consensus       102 L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          102 LKELALDTNQLKSVPDGIFD-RLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCBCCCH
T ss_pred             cCEEECcCCcceEeCHHHhc-CCcccCEEEecCCCeeccC
Confidence            999999999988888875 5 7889999999998655433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.13  E-value=8.4e-11  Score=91.58  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             CCCCeEEEEEEcCCCCcccccc-c--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDD-Y--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~-~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~  186 (235)
                      .+..++.|.+..+......... +  +++|+.|.+.++....    ..+..|..+++|+.|++++|.++.+|. .+..+.
T Consensus        27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  102 (192)
T 1w8a_A           27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC----cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence            3447788888777665333321 3  7888888888877764    345677888888888888888886554 477888


Q ss_pred             cCcEEecccCCCccc-chHHHhcCccccEEeCcCCCCc
Q 043825          187 LLRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~  223 (235)
                      +|++|++++|.+..+ |..+. .+++|++|++++|.+.
T Consensus       103 ~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          103 QLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCCBC
T ss_pred             CCCEEECCCCcCCeeCHHHhh-cCCCCCEEEeCCCCcc
Confidence            888888888888755 55677 8888888888888543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.13  E-value=1.5e-10  Score=94.84  Aligned_cols=118  Identities=18%  Similarity=0.185  Sum_probs=72.0

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  188 (235)
                      ...+++|.+..+.........+  +++|+.|.+.++....    ..+..+..+++|++|++++|.+..+|.. ++.+.+|
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS----LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc----cCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence            3456666666555442222222  5666666666665543    2334466677777777777777655543 4667777


Q ss_pred             cEEecccCCCcccchHH-HhcCccccEEeCcCCCCccccHh-hcccCC
Q 043825          189 RYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIADE-FWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~  234 (235)
                      ++|++++|.+..+|... + .+++|++|++++|.+..+|.. +..+++
T Consensus       160 ~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             CEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcC
Confidence            77777777777666553 5 677777777777766666543 344444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.13  E-value=1.4e-10  Score=95.45  Aligned_cols=120  Identities=19%  Similarity=0.170  Sum_probs=81.9

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCC-CCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSE-SDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~  186 (235)
                      ....+++|.+..+......+..+  +++|+.|.+.++. ...    ..+..+..+++|+.|++++|.+..+ |..+..+.
T Consensus        54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  129 (285)
T 1ozn_A           54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS----VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA  129 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc----cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence            34566777776665543223333  6777777777765 332    2355677788888888888887755 56677888


Q ss_pred             cCcEEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHh-hcccCCC
Q 043825          187 LLRYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      +|++|++++|.+..+|.. +. ++++|++|++++|.+..+|.. +..+++|
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCEEECCCCcccccCHhHhc-cCCCccEEECCCCcccccCHHHhcCcccc
Confidence            888888888888877765 56 788888888888877777753 5555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.12  E-value=1.1e-10  Score=97.74  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=90.2

Q ss_pred             CCCCeEEEEEEc-CCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcc
Q 043825          111 SRKNVKRFCALE-QQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~-~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~  186 (235)
                      ....+++|.+.. +......+..+  +++|+.|.+.++....    ..+..+.++++|++|++++|.+. .+|..++.++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            346788888884 54443344444  8899999998887753    45667888889999999998887 7788888888


Q ss_pred             cCcEEecccCCCc-ccchHHHhcCc-cccEEeCcCCCCc-cccHhhccc
Q 043825          187 LLRYLKLNIPSLK-SLPSSFFNYLS-NLYTLNMPFSDID-HIADEFWKM  232 (235)
Q Consensus       187 ~Lr~L~l~~~~l~-~lP~~i~~~L~-~L~~L~l~~~~l~-~lP~~i~~L  232 (235)
                      +|++|++++|.+. .+|..++ ++. +|++|++++|.+. .+|..+..+
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             CCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCC
Confidence            9999999988887 8888888 887 8888888888665 667666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.12  E-value=1.2e-10  Score=89.21  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=80.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHH-HhcCccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSF-FNYLSNL  212 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~L  212 (235)
                      .++++.|.+.++....     ++......++|+.|++++|.++.+ +.++.+.+|++|++++|.+..+|+.+ . .+++|
T Consensus        18 ~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L   90 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ-ALPDL   90 (176)
T ss_dssp             TTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH-HCTTC
T ss_pred             cCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh-cCCCC
Confidence            7899999999987763     333333344999999999999987 67999999999999999999999776 7 99999


Q ss_pred             cEEeCcCCCCccccH--hhcccCCC
Q 043825          213 YTLNMPFSDIDHIAD--EFWKMNKL  235 (235)
Q Consensus       213 ~~L~l~~~~l~~lP~--~i~~L~~L  235 (235)
                      ++|++++|.+..+|.  .++.+++|
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L  115 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSL  115 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCC
Confidence            999999999999997  77777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.11  E-value=2.2e-10  Score=94.25  Aligned_cols=117  Identities=13%  Similarity=0.026  Sum_probs=68.0

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr  189 (235)
                      ..++.|.+..+.........+  +++|+.|.+.++....    ..+..+..+++|+.|++++|.+..+|. .+..+.+|+
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc----cCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            455566555554442222222  5666666666655543    223345666667777777766665554 366666677


Q ss_pred             EEecccCCCccc-chHHHhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825          190 YLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHIAD-EFWKMNK  234 (235)
Q Consensus       190 ~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~  234 (235)
                      +|++++|.+..+ |..+. ++++|++|++++|.+..+|. .+..+++
T Consensus       181 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~  226 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRA  226 (285)
T ss_dssp             EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             EEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcc
Confidence            777777666655 55566 66777777777776666654 2444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.11  E-value=2.2e-10  Score=91.20  Aligned_cols=98  Identities=21%  Similarity=0.226  Sum_probs=83.2

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL  212 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L  212 (235)
                      .++++.|.+.++....    ..+..|..+++|+.|+|++|.+..+ |..+..+.+|++|+|++|.+..+|..+...+++|
T Consensus        31 ~~~l~~L~l~~n~i~~----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L  106 (220)
T 2v9t_B           31 PETITEIRLEQNTIKV----IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL  106 (220)
T ss_dssp             CTTCCEEECCSSCCCE----ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCCEEECCCCcCCC----cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence            6789999999988764    3345789999999999999999866 7889999999999999999999998763289999


Q ss_pred             cEEeCcCCCCcccc-HhhcccCCC
Q 043825          213 YTLNMPFSDIDHIA-DEFWKMNKL  235 (235)
Q Consensus       213 ~~L~l~~~~l~~lP-~~i~~L~~L  235 (235)
                      ++|+|++|.+..+| ..+..+++|
T Consensus       107 ~~L~L~~N~l~~~~~~~~~~l~~L  130 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAFQDLHNL  130 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEECCCCCCCEeCHHHcCCCCCC
Confidence            99999999888774 456666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.11  E-value=1.3e-10  Score=96.32  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=78.4

Q ss_pred             CCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEE
Q 043825          113 KNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYL  191 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L  191 (235)
                      ..+++|.+..+..........+++|++|.+.++...     .++..+..++.|++|++++|.++.+| ..+..+.+|++|
T Consensus        55 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (290)
T ss_dssp             TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence            445555555554432111111666777777666654     34455677888888888888888765 567888888888


Q ss_pred             ecccCCCcccchHH-HhcCccccEEeCcCCCCccccHhh-cccCC
Q 043825          192 KLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIADEF-WKMNK  234 (235)
Q Consensus       192 ~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~~i-~~L~~  234 (235)
                      ++++|.+..+|..+ . .+++|+.|++++|.+..+|.++ .++++
T Consensus       130 ~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~  173 (290)
T 1p9a_G          130 YLKGNELKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLEN  173 (290)
T ss_dssp             ECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             ECCCCCCCccChhhcc-cccCCCEEECCCCcCCccCHHHhcCcCC
Confidence            88888888887764 5 7888888888888888887654 44544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.11  E-value=2.5e-10  Score=93.53  Aligned_cols=109  Identities=19%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  188 (235)
                      ...+++|.+..+....  .+.+  +++|+.|.+.++....    ..+..+..+++|++|++++|.+..+|.. ++.+.+|
T Consensus        62 l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQS----LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL  135 (272)
T ss_dssp             CTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCc----cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence            3455555555554432  1222  5566666665555443    2233455566666666666666544433 4556666


Q ss_pred             cEEecccCCCcccchHH-HhcCccccEEeCcCCCCccccH
Q 043825          189 RYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~  227 (235)
                      ++|++++|.+..+|... + ++++|++|++++|.+..+|.
T Consensus       136 ~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          136 TYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCT
T ss_pred             CEEECCCCccCccCHHHhc-cCccCCEEECCCCCcCccCH
Confidence            66666666666555443 4 56666666666665555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.10  E-value=1.9e-10  Score=98.16  Aligned_cols=109  Identities=15%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr  189 (235)
                      .+++.|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|+.|+|++|.+..+ |..+..+.+|+
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  139 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT----LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ  139 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc----CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence            345555555544442222222  5556666665555432    2233456666666666666666544 45566666666


Q ss_pred             EEecccCCCcccchHH----HhcCccccEEeCcCCCCcccc
Q 043825          190 YLKLNIPSLKSLPSSF----FNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i----~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      +|+|++|.+..+|..+    . .+++|++|+|++|.+..+|
T Consensus       140 ~L~L~~N~l~~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          140 KLYLSQNQISRFPVELIKDGN-KLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             EEECCSSCCCSCCGGGTC-----CTTCCEEECCSSCCCCCC
T ss_pred             EEECCCCcCCeeCHHHhcCcc-cCCcCCEEECCCCCCCccC
Confidence            6666666666666554    3 5666666666666666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.10  E-value=3.2e-10  Score=86.82  Aligned_cols=97  Identities=19%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSS-FFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~  211 (235)
                      .++++.|.+.++....    ..+..+..+++|++|++++|.++.+|.. +..+.+|++|++++|.++.+|.. +. ++++
T Consensus        27 ~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~  101 (177)
T 2o6r_A           27 PSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD-KLTQ  101 (177)
T ss_dssp             CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred             CCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh-CCcc
Confidence            7899999999988764    3455678999999999999999988765 68999999999999999999876 46 8999


Q ss_pred             ccEEeCcCCCCccccHhh-cccCCC
Q 043825          212 LYTLNMPFSDIDHIADEF-WKMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~~i-~~L~~L  235 (235)
                      |++|++++|.+..+|..+ ..+++|
T Consensus       102 L~~L~l~~N~l~~~~~~~~~~l~~L  126 (177)
T 2o6r_A          102 LKELALDTNQLKSVPDGIFDRLTSL  126 (177)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCEEECcCCcceEeCHHHhcCCccc
Confidence            999999999999998764 555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.08  E-value=2.6e-10  Score=95.53  Aligned_cols=117  Identities=14%  Similarity=0.072  Sum_probs=80.1

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHH-hhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKI-CEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ..++++.+..+..........  +++|+.|.+.++....    ..+.. +..++.|++|++++|.++.+|... .+.+|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~  194 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLK  194 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCC
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc----ccHHHHhhccCcCCEEECCCCcCccccccc-ccccCC
Confidence            456666666665553222223  6777787777776653    22333 346778888888888877665433 477888


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +|++++|.+..+|..+. .+++|++|++++|.+..+|..+..+++|
T Consensus       195 ~L~Ls~N~l~~l~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~l~~L  239 (317)
T 3o53_A          195 TLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVLIEKALRFSQNL  239 (317)
T ss_dssp             EEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             EEECCCCcCCcchhhhc-ccCcccEEECcCCcccchhhHhhcCCCC
Confidence            88888888888887777 8888888888888777888777666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.08  E-value=2.2e-10  Score=101.65  Aligned_cols=118  Identities=14%  Similarity=0.049  Sum_probs=88.3

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhh-ccCccCeEEEeCCcccccchhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICE-MYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ...+++|.+..+......+..+  +++|+.|.+.++....    ..+..+. .++.|+.|+|++|.+..+|.. ..+++|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L  193 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL  193 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----cChHHHhhhCCcccEEecCCCcccccccc-ccCCCC
Confidence            3567788877777654333333  7888888888877654    3344444 788888888888888877553 358888


Q ss_pred             cEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++|++++|.+..+|+.++ .+++|++|++++|.+..+|..++.+++|
T Consensus       194 ~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~~lp~~l~~l~~L  239 (487)
T 3oja_A          194 KTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVLIEKALRFSQNL  239 (487)
T ss_dssp             CEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             CEEECCCCCCCCCCHhHc-CCCCccEEEecCCcCcccchhhccCCCC
Confidence            999999988888888888 8889999999988888888877766654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.08  E-value=2.7e-10  Score=87.01  Aligned_cols=88  Identities=22%  Similarity=0.204  Sum_probs=76.0

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSS-FFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~  211 (235)
                      .++++.|.+.++....    ..+..|..+++|++|+|++|.++.+|.. +..+.+|++|+|++|.++.+|.. +. ++++
T Consensus        29 ~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~  103 (170)
T 3g39_A           29 PTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD-NLKS  103 (170)
T ss_dssp             CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred             CCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhc-CCCC
Confidence            7889999999988875    3467789999999999999999988775 58999999999999999999885 67 9999


Q ss_pred             ccEEeCcCCCCcccc
Q 043825          212 LYTLNMPFSDIDHIA  226 (235)
Q Consensus       212 L~~L~l~~~~l~~lP  226 (235)
                      |++|+|++|.+.-.+
T Consensus       104 L~~L~L~~N~~~c~c  118 (170)
T 3g39_A          104 LTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCEEECCSSCBCTTB
T ss_pred             CCEEEeCCCCCCCCc
Confidence            999999999665433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.07  E-value=2e-10  Score=98.75  Aligned_cols=118  Identities=18%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L  188 (235)
                      ...++++.+..+.........+  +++|+.|.+.++....    ..+..|..+++|+.|++++|.+..+| ..++.+.+|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc----cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            3567777777665542222212  6777777777666543    23346677777777777777776553 446777777


Q ss_pred             cEEecccCCCcccchHH-HhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825          189 RYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIAD-EFWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~  234 (235)
                      ++|++++|.+..+|..+ . ++++|++|++++|.+..+|. .++.+++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTS  166 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred             CEEECCCCccCcCCHHHhc-CCCCCcEEECCCCccCccChhhccCCCC
Confidence            77777777777777664 5 67777777777776665543 3555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.07  E-value=3.7e-10  Score=89.79  Aligned_cols=107  Identities=16%  Similarity=0.151  Sum_probs=91.2

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  187 (235)
                      ....++.|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|+.|++++|.+..+ |..+..+.+
T Consensus        55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN----VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc----cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            45678999998888774444344  8999999999998875    4466789999999999999999966 778999999


Q ss_pred             CcEEecccCCCccc-chHHHhcCccccEEeCcCCCC
Q 043825          188 LRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDI  222 (235)
Q Consensus       188 Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l  222 (235)
                      |++|++++|.++.+ |..+. .+++|++|++++|.+
T Consensus       131 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFD-TLHSLSTLNLLANPF  165 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTT-TCTTCCEEECCSCCE
T ss_pred             CCEEECCCCcCCEECHHHhc-CCCCCCEEEecCcCC
Confidence            99999999999988 67788 999999999999954

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.06  E-value=6.8e-10  Score=92.68  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ....+++|.+..+....... .. +++|+.|.+.++....     + +.+..+++|+.|++++|.+..+|. +..+.+|+
T Consensus        61 ~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  132 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-----V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ  132 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-----C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred             ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-----c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence            35677888887776653222 22 7888888888777653     2 357788888888888888887765 88888888


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +|++++|.+..+|. ++ .+++|++|++++|.+..+|. +..+++|
T Consensus       133 ~L~l~~n~l~~~~~-l~-~l~~L~~L~l~~n~l~~~~~-l~~l~~L  175 (308)
T 1h6u_A          133 VLYLDLNQITNISP-LA-GLTNLQYLSIGNAQVSDLTP-LANLSKL  175 (308)
T ss_dssp             EEECCSSCCCCCGG-GG-GCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             EEECCCCccCcCcc-cc-CCCCccEEEccCCcCCCChh-hcCCCCC
Confidence            88888888888876 77 88888888888888887776 6665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.06  E-value=4.1e-10  Score=103.38  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=93.6

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~  187 (235)
                      .+.++++|.+..+.........+  +++|++|.+.++....    ..+..+.++++|++|++++|.+..+|. .++.+.+
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN   98 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence            45789999998887764343334  8899999998887754    456788899999999999999888876 5889999


Q ss_pred             CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCccc-cHhhcccCCC
Q 043825          188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDIDHI-ADEFWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L  235 (235)
                      |++|++++|.+..+| ..++ ++++|++|++++|.+..+ |..++++++|
T Consensus        99 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  147 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENL  147 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred             CCEEECCCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccC
Confidence            999999999888887 4677 889999999998866654 4455555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.06  E-value=2.5e-10  Score=91.59  Aligned_cols=112  Identities=13%  Similarity=0.056  Sum_probs=63.4

Q ss_pred             CCCeEEEEEEcCC-CCccccccc--CCCcceEEEec-CCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCccc
Q 043825          112 RKNVKRFCALEQQ-SDFAYLDDY--YPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSL  187 (235)
Q Consensus       112 ~~~~r~lsl~~~~-~~~~~~~~~--~~~LrsL~~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~  187 (235)
                      ...++++.+..+. ........+  +++|+.|.+.+ +....    ..+..|..+++|+.|++++|.++.+|. ++.+.+
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~----i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~  128 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY----IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYS  128 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCB
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----cCHHHhCCCCCCCEEeCCCCCCccccc-cccccc
Confidence            3455666666553 332122222  55666666655 44432    223345566666666666666666655 555555


Q ss_pred             Cc---EEecccC-CCcccchH-HHhcCcccc-EEeCcCCCCccccHhh
Q 043825          188 LR---YLKLNIP-SLKSLPSS-FFNYLSNLY-TLNMPFSDIDHIADEF  229 (235)
Q Consensus       188 Lr---~L~l~~~-~l~~lP~~-i~~~L~~L~-~L~l~~~~l~~lP~~i  229 (235)
                      |+   +|++++| .+..+|.. +. ++++|+ +|++++|.+..+|...
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~-~l~~L~~~L~l~~n~l~~i~~~~  175 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQ-GLCNETLTLKLYNNGFTSVQGYA  175 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTT-TTBSSEEEEECCSCCCCEECTTT
T ss_pred             cccccEEECCCCcchhhcCccccc-chhcceeEEEcCCCCCcccCHhh
Confidence            55   6666666 66666654 45 666777 7777776666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.05  E-value=3.2e-10  Score=102.53  Aligned_cols=98  Identities=19%  Similarity=0.102  Sum_probs=84.7

Q ss_pred             cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchH-HHhcCc
Q 043825          133 YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSS-FFNYLS  210 (235)
Q Consensus       133 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~  210 (235)
                      +.+.++.|.+.++....    ..+..|.++++|++|+|++|.++.+|+ .+.+|.+|++|+|++|+++.+|.. +. +|.
T Consensus        50 lp~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~-~L~  124 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLS  124 (635)
T ss_dssp             SCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT-TCT
T ss_pred             CCcCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc-CCC
Confidence            36789999999988864    345679999999999999999998865 689999999999999999999975 57 999


Q ss_pred             cccEEeCcCCCCccccH-hhcccCCC
Q 043825          211 NLYTLNMPFSDIDHIAD-EFWKMNKL  235 (235)
Q Consensus       211 ~L~~L~l~~~~l~~lP~-~i~~L~~L  235 (235)
                      +|++|++++|.+..+|. .+++|++|
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L  150 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTL  150 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             CCCEEECCCCcCCCCChhhhhcCccc
Confidence            99999999999999886 46777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.05  E-value=8.5e-10  Score=86.59  Aligned_cols=97  Identities=25%  Similarity=0.271  Sum_probs=82.4

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSS-FFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~  211 (235)
                      .++++.|.+.++....    ..+..+..+++|++|++++|.++.+|.. +..+.+|++|++++|.+..+|.. +. ++++
T Consensus        27 ~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~  101 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKS----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD-KLTQ  101 (208)
T ss_dssp             CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred             CCCCcEEEcCCCccCc----CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc-CccC
Confidence            7799999999988764    3455678999999999999999988765 68999999999999999999876 47 9999


Q ss_pred             ccEEeCcCCCCccccHh-hcccCCC
Q 043825          212 LYTLNMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      |++|++++|.+..+|.. +.++++|
T Consensus       102 L~~L~L~~N~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCEEEcCCCcCcccCHhHhccCCcC
Confidence            99999999999888765 4556554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.05  E-value=1.6e-10  Score=98.03  Aligned_cols=109  Identities=22%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  188 (235)
                      ...+++|.+..+.........+  +++|++|.+.++....    ..+..|.++++|++|++++|.++.+|.. ++.+.+|
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence            3456666666655543222223  6666666666655442    2234456666666666666666655544 5666666


Q ss_pred             cEEecccCCCcccch--HHHhcCccccEEeCcCC-CCccc
Q 043825          189 RYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFS-DIDHI  225 (235)
Q Consensus       189 r~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~-~l~~l  225 (235)
                      ++|++++|.+..+|.  .+. ++++|++|++++| .+..+
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~-~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEE
T ss_pred             CEEECCCCCCcccCchhhhc-cCCCCcEEECCCCcccccc
Confidence            666666666666655  445 5666666666665 45544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.05  E-value=3.1e-10  Score=92.94  Aligned_cols=117  Identities=18%  Similarity=0.097  Sum_probs=55.0

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr  189 (235)
                      ..+++|.+..+.........+  +++|+.|.+.++....    ..+..+..+++|+.|++++|.+..++ ..+..+.+|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc----cCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence            345555554444432221122  4555555555544432    12234455555555555555554333 3455555555


Q ss_pred             EEecccCCCcccch-HHHhcCccccEEeCcCCCCcc--ccHhhcccCC
Q 043825          190 YLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDH--IADEFWKMNK  234 (235)
Q Consensus       190 ~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~--lP~~i~~L~~  234 (235)
                      +|++++|.+..++. .++ ++++|++|++++|.+..  +|..++.+++
T Consensus       104 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~  150 (276)
T 2z62_A          104 KLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (276)
T ss_dssp             EEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             EEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCC
Confidence            55555555554443 344 55555555555554443  4444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.04  E-value=5.3e-10  Score=95.38  Aligned_cols=114  Identities=18%  Similarity=0.080  Sum_probs=93.6

Q ss_pred             CCCCeEEEEEEcCCCCcccccc---cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDD---YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~---~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~  186 (235)
                      .+..++.|.+..+.........   .+++|+.|.+.++....    ..+..|..+++|+.|+|++|.++.+|. .+..+.
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  112 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ  112 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc----cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence            4566888999888776332222   27899999999888764    344678999999999999999997765 588999


Q ss_pred             cCcEEecccCCCccc-chHHHhcCccccEEeCcCCCCccccHhh
Q 043825          187 LLRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHIADEF  229 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~lP~~i  229 (235)
                      +|++|+|++|.+..+ |..+. ++++|++|+|++|.+..+|..+
T Consensus       113 ~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A          113 ALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGG
T ss_pred             CCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHH
Confidence            999999999999987 45677 9999999999999999999765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.04  E-value=9.5e-10  Score=89.83  Aligned_cols=111  Identities=20%  Similarity=0.125  Sum_probs=66.3

Q ss_pred             CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY  190 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~  190 (235)
                      ...++.|.+..+....... -. +++|+.|.+.++.....+     . +.. +.|+.|++++|.++.+| .++.+.+|++
T Consensus        62 l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~-----~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~  132 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLN-----G-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEI  132 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCT-----T-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCE
T ss_pred             CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcC-----c-ccc-CcccEEEccCCccCCCh-hhcCcccccE
Confidence            3456666666655542211 11 666666666666554321     1 112 66667777777666654 4667777777


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      |++++|.++.+| .++ .+++|++|++++|.+..+ ..+..+++
T Consensus       133 L~Ls~N~i~~~~-~l~-~l~~L~~L~L~~N~i~~~-~~l~~l~~  173 (263)
T 1xeu_A          133 LSIRNNKLKSIV-MLG-FLSKLEVLDLHGNEITNT-GGLTRLKK  173 (263)
T ss_dssp             EECTTSCCCBCG-GGG-GCTTCCEEECTTSCCCBC-TTSTTCCC
T ss_pred             EECCCCcCCCCh-HHc-cCCCCCEEECCCCcCcch-HHhccCCC
Confidence            777777777775 566 777777777777766665 34444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.04  E-value=4e-10  Score=98.44  Aligned_cols=110  Identities=21%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr  189 (235)
                      ..++.+.+..+......+..+  +++|+.|.+.++....    ..+..|..+++|+.|++++|.+..+ |..++.+.+|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccc----cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence            345566655554443222222  5666666666555542    2334555666666666666665543 44556666666


Q ss_pred             EEecccCCCccc-chHHHhcCccccEEeCcCCCCccccH
Q 043825          190 YLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       190 ~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~lP~  227 (235)
                      +|++++|.+..+ |..+. .+++|++|++++|.+..+|.
T Consensus       351 ~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCT
T ss_pred             EEECCCCcccccChhhcc-ccccccEEECCCCccccCCH
Confidence            666666665554 44555 66666666666665555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.04  E-value=5.8e-10  Score=95.79  Aligned_cols=88  Identities=16%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      +++|+.|.+.++....    ..+..+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+|..++ .+++|+
T Consensus       247 l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~  321 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLE  321 (390)
T ss_dssp             CTTCSEEECCSSCCCE----EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH-HHTTCS
T ss_pred             CCCccEEECCCCcCCC----cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcccc-ccCcCC
Confidence            5666666666665543    33456666777777777777777666666667777777777777777777776 777777


Q ss_pred             EEeCcCCCCcccc
Q 043825          214 TLNMPFSDIDHIA  226 (235)
Q Consensus       214 ~L~l~~~~l~~lP  226 (235)
                      +|++++|.+..+|
T Consensus       322 ~L~L~~N~i~~~~  334 (390)
T 3o6n_A          322 NLYLDHNSIVTLK  334 (390)
T ss_dssp             EEECCSSCCCCCC
T ss_pred             EEECCCCccceeC
Confidence            7777777666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.04  E-value=5.7e-10  Score=86.81  Aligned_cols=97  Identities=24%  Similarity=0.246  Sum_probs=81.6

Q ss_pred             CCCcceEEEecCCCCCCCCcchh-HHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchH-HHhcCc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQ-KICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLS  210 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~  210 (235)
                      ..+++.|.+.++.....    .+ ..+..+++|+.|++++|.++.+ |..+..+.+|++|++++|.++.+|.. +. .++
T Consensus        28 ~~~l~~L~l~~n~i~~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~  102 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRI----SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLH  102 (192)
T ss_dssp             CTTCSEEECCSCCCCSB----CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST-TCT
T ss_pred             CCCCCEEECCCCcCCcc----CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc-CCC
Confidence            66999999999887642    22 2489999999999999999966 78899999999999999999988765 67 999


Q ss_pred             cccEEeCcCCCCccc-cHhhcccCCC
Q 043825          211 NLYTLNMPFSDIDHI-ADEFWKMNKL  235 (235)
Q Consensus       211 ~L~~L~l~~~~l~~l-P~~i~~L~~L  235 (235)
                      +|++|++++|.+..+ |..+..+++|
T Consensus       103 ~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (192)
T 1w8a_A          103 QLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             CCCEEECCCCcCCeeCHHHhhcCCCC
Confidence            999999999988866 6667766654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.03  E-value=1.2e-09  Score=90.60  Aligned_cols=113  Identities=18%  Similarity=0.153  Sum_probs=72.9

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ....+++|.+..+....  .+.+  +++|+.|.+.++....     + ..+..+++|+.|++++|.+..+ +.++.+.+|
T Consensus        88 ~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~-----~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L  158 (291)
T 1h6t_A           88 NLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKL  158 (291)
T ss_dssp             TCTTCCEEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred             cCCCCCEEECCCCcCCC--ChhhccCCCCCEEECCCCcCCC-----C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCC
Confidence            34456666666655442  2223  6667777766665542     2 3456677777777777777665 456777777


Q ss_pred             cEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++|++++|.+..++. +. .+++|+.|++++|.+..+|. +..+++|
T Consensus       159 ~~L~L~~N~l~~~~~-l~-~l~~L~~L~L~~N~i~~l~~-l~~l~~L  202 (291)
T 1h6t_A          159 DTLSLEDNQISDIVP-LA-GLTKLQNLYLSKNHISDLRA-LAGLKNL  202 (291)
T ss_dssp             SEEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred             CEEEccCCccccchh-hc-CCCccCEEECCCCcCCCChh-hccCCCC
Confidence            777777777777765 66 77777777777777777764 5555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.03  E-value=4.5e-10  Score=99.95  Aligned_cols=107  Identities=14%  Similarity=0.108  Sum_probs=86.9

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      .+..+++|.+..+......+..+  +++|++|.+.++....    ..+..|.++++|++|++++|.++.+|..  .+.+|
T Consensus        19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L   92 (520)
T 2z7x_B           19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL   92 (520)
T ss_dssp             CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred             ccccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence            34688899988887764333334  8899999998888764    4467889999999999999999888887  88999


Q ss_pred             cEEecccCCCcc--cchHHHhcCccccEEeCcCCCCcc
Q 043825          189 RYLKLNIPSLKS--LPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       189 r~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      ++|++++|.+..  +|..++ ++++|++|++++|.+..
T Consensus        93 ~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             SEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG
T ss_pred             cEEeccCCccccccchhhhc-cCCcceEEEecCcccch
Confidence            999999998875  578888 99999999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.03  E-value=3.3e-10  Score=86.91  Aligned_cols=90  Identities=16%  Similarity=0.097  Sum_probs=72.9

Q ss_pred             ceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHH-HhcCccccEE
Q 043825          138 HSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSF-FNYLSNLYTL  215 (235)
Q Consensus       138 rsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~L~~L  215 (235)
                      +.+.+.++....     +|..+  .+.|++|++++|.+..+ |..++.+.+|++|+|++|.+..+|..+ . ++++|++|
T Consensus        15 ~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD-KLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEE
T ss_pred             cEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC-CcchhhEE
Confidence            455666655543     33322  27899999999999977 668999999999999999999999875 6 89999999


Q ss_pred             eCcCCCCccccHh-hcccCCC
Q 043825          216 NMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       216 ~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      +|++|.+..+|.. +..+++|
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTC
T ss_pred             ECCCCccceeCHHHhccccCC
Confidence            9999999999875 7777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.03  E-value=7.3e-10  Score=98.55  Aligned_cols=111  Identities=20%  Similarity=0.150  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEeccc
Q 043825          117 RFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNI  195 (235)
Q Consensus       117 ~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~  195 (235)
                      ++.+..+.... .+....++++.|.+.++....    ..+..|..+++|++|++++|.+..+ |..++.+.+|++|++++
T Consensus         4 ~l~ls~n~l~~-ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            4 LVDRSKNGLIH-VPKDLSQKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             EEECTTSCCSS-CCCSCCTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             eEecCCCCccc-ccccccccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            44444444441 222236899999999998865    4567899999999999999999866 78999999999999999


Q ss_pred             CCCcccchHHHhcCccccEEeCcCCCCcc--ccHhhcccCCC
Q 043825          196 PSLKSLPSSFFNYLSNLYTLNMPFSDIDH--IADEFWKMNKL  235 (235)
Q Consensus       196 ~~l~~lP~~i~~~L~~L~~L~l~~~~l~~--lP~~i~~L~~L  235 (235)
                      |.++.+|..   .+++|++|++++|.+..  +|..++++++|
T Consensus        79 N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L  117 (520)
T 2z7x_B           79 NKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQL  117 (520)
T ss_dssp             SCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred             CceeecCcc---ccCCccEEeccCCccccccchhhhccCCcc
Confidence            999999987   69999999999998775  67889888775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.03  E-value=3.5e-10  Score=101.45  Aligned_cols=119  Identities=18%  Similarity=0.143  Sum_probs=95.6

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~  187 (235)
                      ....+++|.+..+.........+  +++|++|.+.++....    ..+..|..+++|++|++++|.+..+|. .++.+.+
T Consensus        50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (570)
T ss_dssp             TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred             CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc----cCHhhhcCccccccccccccccccCCCcccccccc
Confidence            45678999998887664333334  8999999999887754    345678999999999999999988776 6899999


Q ss_pred             CcEEecccCCCcc--cchHHHhcCccccEEeCcCCCCcccc-HhhcccCC
Q 043825          188 LRYLKLNIPSLKS--LPSSFFNYLSNLYTLNMPFSDIDHIA-DEFWKMNK  234 (235)
Q Consensus       188 Lr~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP-~~i~~L~~  234 (235)
                      |++|++++|.+..  +|..++ ++++|++|++++|.+..+| ..++.+++
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~  174 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred             ccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhc
Confidence            9999999999875  789999 9999999999999887764 44554443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.03  E-value=2.1e-10  Score=102.54  Aligned_cols=117  Identities=22%  Similarity=0.190  Sum_probs=70.1

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  188 (235)
                      ...++++.+..+......+..+  +++|+.|.+.++....    ..+..|..+++|++|++++|.+..+|.. ++.+.+|
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            3566777776666553333333  6677777776665543    2345566667777777777766655443 6667777


Q ss_pred             cEEecccCCCcc--cchHHHhcCccccEEeCcCCC-CccccH-hhcccC
Q 043825          189 RYLKLNIPSLKS--LPSSFFNYLSNLYTLNMPFSD-IDHIAD-EFWKMN  233 (235)
Q Consensus       189 r~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~-l~~lP~-~i~~L~  233 (235)
                      ++|++++|.+..  .|..++ ++++|++|++++|. +..+|. .+++++
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             cEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhccc
Confidence            777777766653  345566 66666666666663 555552 444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.03  E-value=2.7e-10  Score=103.12  Aligned_cols=116  Identities=16%  Similarity=0.098  Sum_probs=95.3

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~  187 (235)
                      ....+++|.+..+......+..+  +++|++|.+.++....    ..+..|.++++|++|++++|.+..+| ..++++.+
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT  129 (606)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred             CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc----cChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence            55789999998887764444444  8999999999888764    34678899999999999999998766 67999999


Q ss_pred             CcEEecccCCCc--ccchHHHhcCccccEEeCcCCCCccccH-hhcc
Q 043825          188 LRYLKLNIPSLK--SLPSSFFNYLSNLYTLNMPFSDIDHIAD-EFWK  231 (235)
Q Consensus       188 Lr~L~l~~~~l~--~lP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~  231 (235)
                      |++|++++|.+.  .+|..++ ++++|++|++++|.+..+|. .++.
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~  175 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQF  175 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHH
T ss_pred             CCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhh
Confidence            999999999987  5899999 99999999999998877643 3443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=4.4e-10  Score=106.15  Aligned_cols=119  Identities=15%  Similarity=0.209  Sum_probs=92.7

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCC-CCCCCCcchhHHhhccC-------ccCeEEEeCCcccccch
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSE-SDHLDPIDWQKICEMYK-------LLRALDLGYLVLNQYLS  180 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~-~~~~~~~~~~~~~~~l~-------~Lr~L~l~~~~l~~lp~  180 (235)
                      ....+++|.+..+......+..+  +++|+.|.+.++. ....   .+|..+.++.       +|+.|++++|.+..+|.
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~---~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~  565 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA---QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA  565 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH---HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc---cchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence            35678999999887654455555  8899999998886 4310   1455566555       88999999988888888


Q ss_pred             --hcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          181 --EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       181 --~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                        .++++.+|++|++++|.+..+| .++ ++++|+.|++++|.+..+|..++++++
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~~-~L~~L~~L~Ls~N~l~~lp~~l~~l~~  619 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVRHLE-AFG-TNVKLTDLKLDYNQIEEIPEDFCAFTD  619 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCCBCC-CCC-TTSEESEEECCSSCCSCCCTTSCEECT
T ss_pred             hhhhhcCCCCCEEECCCCCcccch-hhc-CCCcceEEECcCCccccchHHHhhccc
Confidence              8888888999999888888888 778 888888888888877788887777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.02  E-value=1.5e-09  Score=90.59  Aligned_cols=72  Identities=18%  Similarity=0.247  Sum_probs=42.5

Q ss_pred             hhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          159 CEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       159 ~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      +..+++|+.|++++|.+..++. +..+.+|++|++++|.+..+|. +. .+++|++|++++|.+..+|. +..+++
T Consensus       147 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~-~l~~L~~L~L~~N~l~~~~~-l~~l~~  218 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LA-SLPNLIEVHLKNNQISDVSP-LANTSN  218 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GG-GCTTCCEEECTTSCCCBCGG-GTTCTT
T ss_pred             ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hc-CCCCCCEEEccCCccCcccc-ccCCCC
Confidence            5555666666666666555544 5566666666666666665554 55 66666666666666665553 444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.02  E-value=4.4e-10  Score=98.23  Aligned_cols=121  Identities=18%  Similarity=0.124  Sum_probs=80.4

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  187 (235)
                      .+..+++|.+..+......+..+  +++|+.|.+.++.....   ..+..|..+++|++|++++|.+..+ |..++.+.+
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            45678888888777664333444  77888888877655320   2245677778888888888877644 667777778


Q ss_pred             CcEEecccCCCcc-cchH--HHhcCccccEEeCcCCCCccc-cHh-hcccCCC
Q 043825          188 LRYLKLNIPSLKS-LPSS--FFNYLSNLYTLNMPFSDIDHI-ADE-FWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~-lP~~--i~~~L~~L~~L~l~~~~l~~l-P~~-i~~L~~L  235 (235)
                      |++|++++|.+.. +|..  ++ ++++|++|++++|.+..+ |.. ++++++|
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFK-PLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTT-TCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             CCEEeCCCCCCCccccCccccc-CcccCCEEECCCCccCccCcccccCCCCcc
Confidence            8888888777764 3443  66 777777777777766655 433 5555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.01  E-value=1.6e-09  Score=89.81  Aligned_cols=114  Identities=18%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ....+++|.+..+....... .. +++|+.|.+.++....     + +.+..+++|+.|++++|.+..+ +.+..+.+|+
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~  137 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-----L-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLE  137 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----G-GGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCC
T ss_pred             cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-----C-hhhccCCCCCEEECCCCcCCCC-hhhcCCCCCC
Confidence            34678888888777653222 22 8888888888877653     2 3478888899999999988876 4578888999


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +|++++|.+..+ ..++ ++++|++|++++|.+..+|. +..+++|
T Consensus       138 ~L~l~~n~l~~~-~~l~-~l~~L~~L~L~~N~l~~~~~-l~~l~~L  180 (291)
T 1h6t_A          138 SLYLGNNKITDI-TVLS-RLTKLDTLSLEDNQISDIVP-LAGLTKL  180 (291)
T ss_dssp             EEECCSSCCCCC-GGGG-GCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             EEEccCCcCCcc-hhhc-cCCCCCEEEccCCccccchh-hcCCCcc
Confidence            999999988888 5677 89999999999998888776 6666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.01  E-value=7.9e-10  Score=103.24  Aligned_cols=96  Identities=20%  Similarity=0.222  Sum_probs=47.4

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEEecccCCCc-ccchHHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYLKLNIPSLK-SLPSSFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L~l~~~~l~-~lP~~i~~~L~~  211 (235)
                      +++|+.|.+.++....    ..+..+..++.|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|.+++ ++++
T Consensus       441 l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~  515 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLEN  515 (768)
T ss_dssp             CTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTT
T ss_pred             CCCCCEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCC
Confidence            4444444444444332    23344455555555555555544 44555555555555555555544 4455555 5555


Q ss_pred             ccEEeCcCCCCc-cccHhhcccCC
Q 043825          212 LYTLNMPFSDID-HIADEFWKMNK  234 (235)
Q Consensus       212 L~~L~l~~~~l~-~lP~~i~~L~~  234 (235)
                      |++|++++|.+. .+|..++.+++
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~  539 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRS  539 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTT
T ss_pred             CCEEECCCCcccCcCCHHHcCCCC
Confidence            555555555333 44555544443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.01  E-value=7e-10  Score=97.27  Aligned_cols=112  Identities=22%  Similarity=0.191  Sum_probs=75.4

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  187 (235)
                      .+..+++|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|+.|+|++|.+..+|.. +..+.+
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  148 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ----IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK  148 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC----cChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence            45678888887777664333444  7888888887776653    3345677788888888888887766554 677778


Q ss_pred             CcEEecccCCCcccch-HHHhcCccccEEeCcCC-CCccccH
Q 043825          188 LRYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFS-DIDHIAD  227 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~-~l~~lP~  227 (235)
                      |++|++++|.+..+|. .+. ++++|++|++++| .+..+|.
T Consensus       149 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          149 LRELWLRNNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             CCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECT
T ss_pred             CCEEECCCCCcceeCHhHHh-cCCcccEEeCCCCCCccccCh
Confidence            8888888877777765 334 5666666666654 4555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.01  E-value=9.4e-10  Score=96.14  Aligned_cols=112  Identities=20%  Similarity=0.154  Sum_probs=73.3

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~  187 (235)
                      .+..++.|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|+.|+|++|.++.+|. .+..+.+
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK  137 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc----cChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence            45667778877777664333334  7788888887776653    334567777788888888877776655 5777777


Q ss_pred             CcEEecccCCCcccch-HHHhcCccccEEeCcCC-CCccccH
Q 043825          188 LRYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFS-DIDHIAD  227 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~-~l~~lP~  227 (235)
                      |++|++++|.+..+|. .+. ++++|++|++++| .+..+|.
T Consensus       138 L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECT
T ss_pred             CceeeCCCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCc
Confidence            7777777777776665 334 5555666655554 4444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.01  E-value=7.7e-10  Score=104.33  Aligned_cols=121  Identities=19%  Similarity=0.133  Sum_probs=87.2

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  187 (235)
                      .+..+++|.+..+.........+  +++|+.|.+.++.....   ..+..|.++++|++|+|++|.+..+ |..++.+.+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~---i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT---IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE---ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc---cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            56788889888887764444444  88888888887744320   2256778888888888888887754 778888888


Q ss_pred             CcEEecccCCCcc-cchH--HHhcCccccEEeCcCCCCccc--cHhhcccCCC
Q 043825          188 LRYLKLNIPSLKS-LPSS--FFNYLSNLYTLNMPFSDIDHI--ADEFWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~-lP~~--i~~~L~~L~~L~l~~~~l~~l--P~~i~~L~~L  235 (235)
                      |++|+|++|.+.. +|..  ++ ++++|++|++++|.+..+  |..++++++|
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFR-NLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCS-SCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             cCEeeCcCCCCCcccccCcccc-ccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            8888888887764 4554  67 888888888888866654  2456666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.01  E-value=3.3e-10  Score=103.74  Aligned_cols=119  Identities=14%  Similarity=0.201  Sum_probs=90.0

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCC-CCCCCCcchhHHhhcc------CccCeEEEeCCcccccch-
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSE-SDHLDPIDWQKICEMY------KLLRALDLGYLVLNQYLS-  180 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~-~~~~~~~~~~~~~~~l------~~Lr~L~l~~~~l~~lp~-  180 (235)
                      ....+++|.+..+......+..+  +++|+.|.+.++. ....   .+|..+.++      ++|++|++++|.++.+|. 
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~---~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~  323 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE---QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE  323 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH---HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc---cchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence            35678899998887654455555  8899999988876 4310   255666665      888888888888888888 


Q ss_pred             -hcCCcccCcEEecccCCCc-ccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          181 -EIENLSLLRYLKLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       181 -~i~~L~~Lr~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                       .++.+.+|++|++++|.+. .+| .++ ++++|++|++++|.+..+|..++++++
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~~lp~~l~~l~~  377 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQITEIPANFCGFTE  377 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSEEEECCTTSEEECT
T ss_pred             hhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCccccccHhhhhhcc
Confidence             8888888888888888887 888 777 788888888888877778777776655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.00  E-value=1.3e-09  Score=84.95  Aligned_cols=96  Identities=22%  Similarity=0.237  Sum_probs=83.2

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccch-HHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPS-SFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~~L~~  211 (235)
                      .++++.|.+.++...     .++..|..+++|+.|++++|.++.++ ..+..+.+|++|+|++|.+..+|. .+. .+++
T Consensus        30 ~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~  103 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD-GLKS  103 (193)
T ss_dssp             CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTT
T ss_pred             CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC-CCCC
Confidence            779999999998876     35578999999999999999999775 568999999999999999998886 577 9999


Q ss_pred             ccEEeCcCCCCccccHh-hcccCCC
Q 043825          212 LYTLNMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      |++|+|++|.+..+|.. +..+++|
T Consensus       104 L~~L~L~~N~l~~~~~~~~~~l~~L  128 (193)
T 2wfh_A          104 LRLLSLHGNDISVVPEGAFNDLSAL  128 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             CCEEECCCCCCCeeChhhhhcCccc
Confidence            99999999999999874 5556543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=4.7e-10  Score=101.85  Aligned_cols=87  Identities=20%  Similarity=0.248  Sum_probs=42.6

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHH-HhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSF-FNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~  211 (235)
                      +++|++|.+.++....    ..+..|..+++|+.|+|++|.+..+|. .++.+.+|++|++++|.+..+|..+ + ++++
T Consensus        74 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~  148 (597)
T 3oja_B           74 FRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH-NTPK  148 (597)
T ss_dssp             CCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred             CCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc-cCCC
Confidence            4555555555544432    222344555555555555555544332 3355555555555555555555443 4 5555


Q ss_pred             ccEEeCcCCCCccc
Q 043825          212 LYTLNMPFSDIDHI  225 (235)
Q Consensus       212 L~~L~l~~~~l~~l  225 (235)
                      |++|++++|.+..+
T Consensus       149 L~~L~Ls~N~l~~~  162 (597)
T 3oja_B          149 LTTLSMSNNNLERI  162 (597)
T ss_dssp             CCEEECCSSCCCBC
T ss_pred             CCEEEeeCCcCCCC
Confidence            55555555544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=9.3e-10  Score=99.90  Aligned_cols=106  Identities=13%  Similarity=0.007  Sum_probs=72.0

Q ss_pred             CeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEE
Q 043825          114 NVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYL  191 (235)
Q Consensus       114 ~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L  191 (235)
                      .++.|.+..+....  .+.+  +++|+.|.+.++....    ..+..|..+++|+.|+|++|.+..+|..++.+++|++|
T Consensus       233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L  306 (597)
T 3oja_B          233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL  306 (597)
T ss_dssp             CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEE
T ss_pred             CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC----CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEE
Confidence            45555555554432  2222  6777777777666543    34566777777777777777777777777777777777


Q ss_pred             ecccCCCcccchHHHhcCccccEEeCcCCCCcccc
Q 043825          192 KLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       192 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      ++++|.+..+|..++ .+++|++|++++|.+..+|
T Consensus       307 ~Ls~N~l~~i~~~~~-~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          307 DLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             ECCSSCCCCCGGGHH-HHTTCSEEECCSSCCCCCC
T ss_pred             ECCCCCCCccCcccc-cCCCCCEEECCCCCCCCcC
Confidence            777777777777777 7777777777777666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=6.8e-10  Score=104.87  Aligned_cols=119  Identities=12%  Similarity=0.173  Sum_probs=99.9

Q ss_pred             CCCCeEEEEEEcCCCCcc-----------------ccccc----CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEE
Q 043825          111 SRKNVKRFCALEQQSDFA-----------------YLDDY----YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALD  169 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~-----------------~~~~~----~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~  169 (235)
                      ...+++.|.+..+.....                 .+..+    +++|+.|.+.++....    .+|..+.++++|+.|+
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEE
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEE
Confidence            456789999998887641                 23321    7899999999987654    5678899999999999


Q ss_pred             EeCCc-cc--ccchhcCCcc-------cCcEEecccCCCcccch--HHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          170 LGYLV-LN--QYLSEIENLS-------LLRYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       170 l~~~~-l~--~lp~~i~~L~-------~Lr~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +++|. ++  .+|..++.+.       +|++|++++|.+..+|.  .++ ++++|++|++++|.+..+| .++++++|
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~-~L~~L~~L~Ls~N~l~~lp-~~~~L~~L  597 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ-KMVKLGLLDCVHNKVRHLE-AFGTNVKL  597 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT-TCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh-cCCCCCEEECCCCCcccch-hhcCCCcc
Confidence            99998 87  4898888777       99999999999999999  999 9999999999999888999 77776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.98  E-value=8.9e-10  Score=88.36  Aligned_cols=109  Identities=14%  Similarity=0.074  Sum_probs=70.8

Q ss_pred             CCCeEEEEEEc-CCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccC---eEEEeCC-cccccch-hcC
Q 043825          112 RKNVKRFCALE-QQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLR---ALDLGYL-VLNQYLS-EIE  183 (235)
Q Consensus       112 ~~~~r~lsl~~-~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr---~L~l~~~-~l~~lp~-~i~  183 (235)
                      ...+++|.+.. +.........+  +++|+.|.+.++....     ++. +..++.|+   .|++++| .++.+|. .+.
T Consensus        79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~  152 (239)
T 2xwt_C           79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ  152 (239)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred             CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCccccc
Confidence            45677777775 55543222233  6777777777766653     222 55666666   7777777 6776654 366


Q ss_pred             CcccCc-EEecccCCCcccchHHHhcCccccEEeCcCC-CCccccH
Q 043825          184 NLSLLR-YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS-DIDHIAD  227 (235)
Q Consensus       184 ~L~~Lr-~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~  227 (235)
                      .+.+|+ +|++++|.+..+|.... ...+|+.|++++| .++.+|.
T Consensus       153 ~l~~L~~~L~l~~n~l~~i~~~~~-~~~~L~~L~L~~n~~l~~i~~  197 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDK  197 (239)
T ss_dssp             TTBSSEEEEECCSCCCCEECTTTT-TTCEEEEEECTTCTTCCEECT
T ss_pred             chhcceeEEEcCCCCCcccCHhhc-CCCCCCEEEcCCCCCcccCCH
Confidence            777777 77777777777777666 5577777777777 4777754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.97  E-value=1.4e-09  Score=97.88  Aligned_cols=107  Identities=17%  Similarity=0.122  Sum_probs=78.5

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      .+..+++|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|++|++++|.++.+|..  .+.+|
T Consensus        50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL  123 (562)
T ss_dssp             SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred             CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence            34677888887777664333344  7788888888777653    3356677888888888888888877776  78888


Q ss_pred             cEEecccCCCcccc--hHHHhcCccccEEeCcCCCCcc
Q 043825          189 RYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       189 r~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      ++|++++|.+..+|  ..++ ++++|++|++++|.+..
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCT
T ss_pred             CEEECCCCCccccCchHhhc-ccCcccEEecCCCcccc
Confidence            88888888877654  6777 88888888888886654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.97  E-value=7.7e-10  Score=100.15  Aligned_cols=110  Identities=12%  Similarity=-0.040  Sum_probs=72.0

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  187 (235)
                      .+..+++|.+..+......+..+  +++|++|.+.++....    ..+..|.++++|++|++++|.+..+ |..++.+.+
T Consensus        31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  106 (606)
T 3t6q_A           31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA  106 (606)
T ss_dssp             SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred             CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence            45567777777776654333334  7777777777766543    3355667777777777777776643 556777777


Q ss_pred             CcEEecccCCCccc-chHHHhcCccccEEeCcCCCCccc
Q 043825          188 LRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHI  225 (235)
Q Consensus       188 Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~l  225 (235)
                      |++|++++|.+..+ |..++ ++++|++|++++|.+..+
T Consensus       107 L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A          107 LKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             CCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCC
T ss_pred             ccEeeccccCcccCCcchhc-cCCcccEEECCCCccccc
Confidence            77777777776665 44555 666777777776655544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.97  E-value=5.7e-10  Score=102.12  Aligned_cols=118  Identities=11%  Similarity=0.180  Sum_probs=97.2

Q ss_pred             CCCCeEEEEEEcCCCCcc-----------------ccccc----CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEE
Q 043825          111 SRKNVKRFCALEQQSDFA-----------------YLDDY----YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALD  169 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~-----------------~~~~~----~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~  169 (235)
                      ..+.++.|.+..+.....                 .+..+    +++|+.|.+.++....    .+|..+.++++|++|+
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEE
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEE
Confidence            456788999988876642                 22221    6889999999887654    5678889999999999


Q ss_pred             EeCCc-cc--ccchhcCCc------ccCcEEecccCCCcccch--HHHhcCccccEEeCcCCCCc-cccHhhcccCC
Q 043825          170 LGYLV-LN--QYLSEIENL------SLLRYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDID-HIADEFWKMNK  234 (235)
Q Consensus       170 l~~~~-l~--~lp~~i~~L------~~Lr~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~  234 (235)
                      +++|. ++  .+|..++.+      .+|++|++++|.+..+|.  .++ ++++|++|++++|.+. .+| .++.+++
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~  354 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIK  354 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence            99998 87  489988887      899999999999999999  899 9999999999999887 898 7766554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.96  E-value=1.2e-09  Score=98.20  Aligned_cols=112  Identities=18%  Similarity=0.191  Sum_probs=91.1

Q ss_pred             EEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecc
Q 043825          116 KRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLN  194 (235)
Q Consensus       116 r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~  194 (235)
                      +++.+..+.... .+....++++.|.+.++....    ..+..|..+++|++|++++|.++.+ |..++.+.+|++|+++
T Consensus        34 ~~l~ls~~~L~~-ip~~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cEEEcCCCCCcc-CCCCCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            566666665542 222237899999999988865    3457889999999999999999866 6789999999999999


Q ss_pred             cCCCcccchHHHhcCccccEEeCcCCCCcccc--HhhcccCCC
Q 043825          195 IPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA--DEFWKMNKL  235 (235)
Q Consensus       195 ~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP--~~i~~L~~L  235 (235)
                      +|.++.+|..   .+++|++|++++|.+..+|  ..++++++|
T Consensus       109 ~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L  148 (562)
T 3a79_B          109 HNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKL  148 (562)
T ss_dssp             TSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred             CCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcc
Confidence            9999999987   6999999999999887764  788888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.96  E-value=5e-10  Score=92.97  Aligned_cols=117  Identities=19%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L  188 (235)
                      ..+++.+.+..+.........+  +++|+.|.+.++.....   ..+..+..+++|+.|++++|.+..+ |..+..+.+|
T Consensus       125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            3456666665554432222222  56666666665544210   1345566777777777777777654 5667777777


Q ss_pred             cEEecccCCCcccch-HHHhcCccccEEeCcCCCCcc-ccHhhccc
Q 043825          189 RYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDH-IADEFWKM  232 (235)
Q Consensus       189 r~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~-lP~~i~~L  232 (235)
                      ++|++++|.+..+|. .+. .+++|++|++++|.+.. .|..+..+
T Consensus       202 ~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             CEEECTTSCCSBCCSGGGT-TCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             CEEECCCCccCccChhhcc-CcccCCEeECCCCCCcccCHHHHHhh
Confidence            777777777776655 455 77777777777775554 34444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.96  E-value=8.7e-10  Score=84.15  Aligned_cols=90  Identities=17%  Similarity=0.116  Sum_probs=72.5

Q ss_pred             ceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHH-HhcCccccEE
Q 043825          138 HSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSF-FNYLSNLYTL  215 (235)
Q Consensus       138 rsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~L~~L  215 (235)
                      +++.+.++....     +|..+  .+.|+.|++++|.++.+ |..+..+.+|++|+|++|.++.+|... . ++++|++|
T Consensus        12 ~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L   83 (170)
T 3g39_A           12 TTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD-KLTQLTQL   83 (170)
T ss_dssp             TEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEE
T ss_pred             CEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc-CCCCCCEE
Confidence            456666655543     23222  37899999999999977 667999999999999999999999875 6 89999999


Q ss_pred             eCcCCCCccccHh-hcccCCC
Q 043825          216 NMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       216 ~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      +|++|.+..+|.. +..+++|
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L  104 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSL  104 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTC
T ss_pred             ECCCCccCEeCHHHhcCCCCC
Confidence            9999999999874 6666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=96.11  Aligned_cols=108  Identities=19%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  187 (235)
                      .+..+++|.+..+.........+  +++|+.|.+.++....    ..+..|.++++|+.|+|++|.+..+|.. +..+.+
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence            34456666666555543222223  5566666665554432    2234455555566666665555555432 455555


Q ss_pred             CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCc
Q 043825          188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~  223 (235)
                      |++|++++|.+..++ ..+. ++++|++|++++|.+.
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~  141 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLV  141 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCC
T ss_pred             CCEEECCCCccccCChhHcc-ccccCCEEECCCCccc
Confidence            555555555554332 2334 4555555555544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.95  E-value=2.3e-09  Score=100.16  Aligned_cols=117  Identities=15%  Similarity=0.085  Sum_probs=99.6

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L  188 (235)
                      ..+++.+.+..+......+..+  +++|+.|.+.++....    ..+..+.++++|++|++++|.+. .+|.+++.+++|
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC----cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            4567778777776654444444  8999999999988865    46778999999999999999988 889999999999


Q ss_pred             cEEecccCCCc-ccchHHHhcCccccEEeCcCCCC-ccccHhhcccC
Q 043825          189 RYLKLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDI-DHIADEFWKMN  233 (235)
Q Consensus       189 r~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~  233 (235)
                      ++|++++|.+. .+|..++ ++++|++|++++|.+ ..+|..++++.
T Consensus       517 ~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~  562 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQS  562 (768)
T ss_dssp             CEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred             CEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhccc
Confidence            99999999987 8999999 999999999999955 48998887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.94  E-value=3.9e-09  Score=88.97  Aligned_cols=113  Identities=16%  Similarity=0.050  Sum_probs=60.2

Q ss_pred             CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY  190 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~  190 (235)
                      ...++++.+..+....... .. +++|++|.+.++....     + +.+..+++|++|++++|.+..+|. +..+.+|++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-----~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~  136 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-----I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYS  136 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-----c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence            3455666655554432111 11 5666666665554432     1 235566666666666666655554 556666666


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      |++++|.....+..+. .+++|++|++++|.+..+|. +..+++
T Consensus       137 L~l~~n~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~l~~  178 (347)
T 4fmz_A          137 LNLGANHNLSDLSPLS-NMTGLNYLTVTESKVKDVTP-IANLTD  178 (347)
T ss_dssp             EECTTCTTCCCCGGGT-TCTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred             EECCCCCCcccccchh-hCCCCcEEEecCCCcCCchh-hccCCC
Confidence            6666664332333355 66666666666665555543 444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.94  E-value=3.1e-09  Score=96.76  Aligned_cols=111  Identities=17%  Similarity=0.139  Sum_probs=66.2

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ...+++|.+..+....  ++.+  +++|+.|.+.++....     + +.+..+++|+.|+|++|.+..+ ..++.+.+|+
T Consensus        86 l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~  156 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLD  156 (605)
T ss_dssp             CTTCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCS
T ss_pred             CCCCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCC-----C-ccccCCCccCEEECCCCccCCc-hhhcccCCCC
Confidence            3455666665555442  2223  6666666666655542     1 2356666677777777666655 4566666777


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      .|+|++|.+..+++ +. .+++|+.|+|++|.+..+| .+..|++
T Consensus       157 ~L~Ls~N~l~~~~~-l~-~l~~L~~L~Ls~N~i~~l~-~l~~l~~  198 (605)
T 1m9s_A          157 TLSLEDNQISDIVP-LA-GLTKLQNLYLSKNHISDLR-ALAGLKN  198 (605)
T ss_dssp             EEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCBCG-GGTTCTT
T ss_pred             EEECcCCcCCCchh-hc-cCCCCCEEECcCCCCCCCh-HHccCCC
Confidence            77777766666655 66 6677777777776666664 3555444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.94  E-value=1e-09  Score=91.15  Aligned_cols=110  Identities=16%  Similarity=0.117  Sum_probs=69.8

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      .+..+++|.+..+.........+  +++|+.|.+.++......  ..+..+..+++|++|++++|.+..+|..+..+.+|
T Consensus        26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L  103 (306)
T 2z66_A           26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL  103 (306)
T ss_dssp             CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE--EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred             CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc--CcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence            44577888887776653222223  778888888776654211  12355566777777777777777677667677777


Q ss_pred             cEEecccCCCcccch--HHHhcCccccEEeCcCCCCc
Q 043825          189 RYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       189 r~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~  223 (235)
                      ++|++++|.+..+|.  .+. ++++|++|++++|.+.
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~  139 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTR  139 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCE
T ss_pred             CEEECCCCcccccccchhhh-hccCCCEEECCCCcCC
Confidence            777777766666653  455 6666666666666544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.94  E-value=5.8e-09  Score=87.49  Aligned_cols=117  Identities=14%  Similarity=0.121  Sum_probs=79.1

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      .+..++.+.+..+.........+  +++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|..+.  .+|
T Consensus        50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L  123 (330)
T 1xku_A           50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL  123 (330)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred             CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence            34577888887777664333334  7888888888877654    346677888888888888888887777655  567


Q ss_pred             cEEecccCCCcccchH-HHhcCccccEEeCcCCCCc---cccHhhcccCC
Q 043825          189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDID---HIADEFWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~---~lP~~i~~L~~  234 (235)
                      ++|++++|.+..+|.. +. ++++|++|++++|.+.   ..|..+.++++
T Consensus       124 ~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  172 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKK  172 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHT-TCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             cEEECCCCcccccCHhHhc-CCccccEEECCCCcCCccCcChhhccCCCC
Confidence            7777777777766654 45 6777777777776543   23444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.93  E-value=1.9e-09  Score=90.55  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=72.0

Q ss_pred             CCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcE
Q 043825          113 KNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRY  190 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~  190 (235)
                      ..++.+.+..+...  ..+.. .++|+.|.+.++....    ..+..+..+++|+.|++++|.+..++ ..+..+.+|++
T Consensus       171 ~~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          171 KKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             TTCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             CCcCEEECCCCccc--cCCccccccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence            34455555444433  11111 4556666665555432    23456777888888888888877554 46777888888


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccccH
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  227 (235)
                      |++++|.+..+|..+. .+++|++|++++|.+..+|.
T Consensus       245 L~L~~N~l~~lp~~l~-~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          245 LHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             EECCSSCCSSCCTTTT-TCSSCCEEECCSSCCCCCCT
T ss_pred             EECCCCcCccCChhhc-cCCCcCEEECCCCcCCccCh
Confidence            8888888888888887 88888888888887777764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.93  E-value=2.2e-09  Score=94.05  Aligned_cols=61  Identities=13%  Similarity=0.003  Sum_probs=26.1

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN  176 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~  176 (235)
                      ...++.|.+..+.........+  +++|+.|.+.++....    ..+..|..+++|+.|++++|.+.
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV----IPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB----CCTTTSSSCTTCCEEECCSCCCC
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc----cChhhhcccCCCCEEECCCCCcc
Confidence            3445555555554432222222  4555555555444432    11223344444444444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.7e-09  Score=91.72  Aligned_cols=97  Identities=25%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~  211 (235)
                      .++++.|.+.++....    ..+..+.++++|+.|++++|.+..+ |..++.+.+|++|++++|.+..+|.. ++ ++++
T Consensus        51 ~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~  125 (353)
T 2z80_A           51 TEAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK-PLSS  125 (353)
T ss_dssp             CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT-TCTT
T ss_pred             cccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC-CCcc
Confidence            7799999999888764    3344789999999999999999866 56799999999999999999999987 67 9999


Q ss_pred             ccEEeCcCCCCccccH--hhcccCCC
Q 043825          212 LYTLNMPFSDIDHIAD--EFWKMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~--~i~~L~~L  235 (235)
                      |++|++++|.+..+|.  .++++++|
T Consensus       126 L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A          126 LTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             CSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             CCEEECCCCCCcccCchhhhccCCCC
Confidence            9999999999999987  56666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.92  E-value=5.2e-10  Score=93.68  Aligned_cols=115  Identities=16%  Similarity=0.108  Sum_probs=94.7

Q ss_pred             CCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ...+++|.+..+......+...   +++|+.|.+.++....     .+ ....+++|+.|++++|.+..+|..+..+.+|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L  216 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV  216 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-----cc-cccccccCCEEECCCCcCCcchhhhcccCcc
Confidence            4678999998887764333333   6899999999888753     22 2335899999999999999999889999999


Q ss_pred             cEEecccCCCcccchHHHhcCccccEEeCcCCCCc--cccHhhcccC
Q 043825          189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID--HIADEFWKMN  233 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~  233 (235)
                      ++|++++|.+..+|..+. .+++|+.|++++|.+.  .+|..++.++
T Consensus       217 ~~L~L~~N~l~~l~~~~~-~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          217 TWISLRNNKLVLIEKALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             SEEECTTSCCCEECTTCC-CCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             cEEECcCCcccchhhHhh-cCCCCCEEEccCCCccCcCHHHHHhccc
Confidence            999999999999999999 9999999999999766  6777666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.92  E-value=2.4e-09  Score=93.55  Aligned_cols=42  Identities=33%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             cCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccc
Q 043825          182 IENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHI  225 (235)
Q Consensus       182 i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  225 (235)
                      +..+.+|++|++++|.+..+|. +. .+++|++|++++|.+..+
T Consensus       181 ~~~l~~L~~L~L~~n~l~~~~~-~~-~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLREIPN-LT-PLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSSCCC-CT-TCSSCCEEECTTSCCCEE
T ss_pred             hhcccccCeecCCCCcCccccc-cC-CCcccCEEECCCCccCcc
Confidence            3444444444444444444442 33 444444444444444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.92  E-value=2.3e-09  Score=94.31  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=82.2

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY  190 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~  190 (235)
                      ..++++.+......  ..+.+  +++|+.|.+.++....     .+. +.++++|+.|++++|.+..++. ++.+.+|++
T Consensus        46 ~~l~~L~l~~~~i~--~l~~~~~l~~L~~L~Ls~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  116 (466)
T 1o6v_A           46 DQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTD-----ITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTG  116 (466)
T ss_dssp             HTCCEEECCSSCCC--CCTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             ccccEEecCCCCCc--cCcchhhhcCCCEEECCCCccCC-----chh-hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence            46777777766554  22333  8888888888877653     333 7888888888888888887776 888888888


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      |++++|.+..+|. +. ++++|++|++++|.+..+|. ++++++
T Consensus       117 L~L~~n~l~~~~~-~~-~l~~L~~L~l~~n~l~~~~~-~~~l~~  157 (466)
T 1o6v_A          117 LTLFNNQITDIDP-LK-NLTNLNRLELSSNTISDISA-LSGLTS  157 (466)
T ss_dssp             EECCSSCCCCCGG-GT-TCTTCSEEEEEEEEECCCGG-GTTCTT
T ss_pred             EECCCCCCCCChH-Hc-CCCCCCEEECCCCccCCChh-hccCCc
Confidence            8888888888876 77 88888888888887776663 554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.90  E-value=8.3e-11  Score=91.90  Aligned_cols=105  Identities=15%  Similarity=0.105  Sum_probs=77.8

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ...++.|.+..+....  .+.+  +++|+.|.+.++...     .++..+..+++|+.|++++|.+..+| .++.+.+|+
T Consensus        47 l~~L~~L~ls~n~l~~--l~~~~~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             TTTCSEEECSEEEESC--CCCHHHHTTCCEEEEEEEEEC-----SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred             CCCCCEEECCCCCCcc--ccccccCCCCCEEECCCCCcc-----cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence            4567777776665543  2234  788888888877665     34556677788888888888888776 577888888


Q ss_pred             EEecccCCCcccch--HHHhcCccccEEeCcCCCCccc
Q 043825          190 YLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDIDHI  225 (235)
Q Consensus       190 ~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~l  225 (235)
                      +|++++|.+..+|.  .+. .+++|++|++++|.+...
T Consensus       119 ~L~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHT-TTTTCSEEEECSCHHHHH
T ss_pred             EEECCCCcCCchhHHHHHh-cCCCCCEEEecCCccccc
Confidence            88888888887765  677 888888888888866544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.90  E-value=5e-09  Score=85.52  Aligned_cols=83  Identities=18%  Similarity=0.168  Sum_probs=40.1

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      +++|+.|.+.++....     ++. +..+++|+.|++++|.++.+|....  .+|++|++++|.++.+| .+. ++++|+
T Consensus        62 l~~L~~L~L~~N~i~~-----~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~-~l~~L~  131 (263)
T 1xeu_A           62 FTNLKELHLSHNQISD-----LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLI-HLKNLE  131 (263)
T ss_dssp             CTTCCEEECCSSCCCC-----CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGT-TCTTCC
T ss_pred             CCCCCEEECCCCccCC-----Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhc-Cccccc
Confidence            4555555555444432     112 4455555555555555554443222  45555555555555443 344 555555


Q ss_pred             EEeCcCCCCcccc
Q 043825          214 TLNMPFSDIDHIA  226 (235)
Q Consensus       214 ~L~l~~~~l~~lP  226 (235)
                      +|++++|.+..+|
T Consensus       132 ~L~Ls~N~i~~~~  144 (263)
T 1xeu_A          132 ILSIRNNKLKSIV  144 (263)
T ss_dssp             EEECTTSCCCBCG
T ss_pred             EEECCCCcCCCCh
Confidence            5555555554444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.89  E-value=4.6e-09  Score=88.28  Aligned_cols=106  Identities=16%  Similarity=0.180  Sum_probs=83.5

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ....++.|.+..+.........+  +++|+.|.+.++....    ..+..+..+++|+.|++++|.+..+|..+.  .+|
T Consensus        52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L  125 (332)
T 2ft3_A           52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL  125 (332)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred             CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence            34578888888877664333334  8899999998887753    346778889999999999999888888776  789


Q ss_pred             cEEecccCCCcccchH-HHhcCccccEEeCcCCCCc
Q 043825          189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~  223 (235)
                      ++|++++|.+..+|.. +. ++++|++|++++|.+.
T Consensus       126 ~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFS-GLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGS-SCSSCCEEECCSCCCB
T ss_pred             CEEECCCCccCccCHhHhC-CCccCCEEECCCCccc
Confidence            9999999988888765 56 8889999999888664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.89  E-value=2.5e-09  Score=94.94  Aligned_cols=116  Identities=11%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             CCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcC-CcccCcE
Q 043825          113 KNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIE-NLSLLRY  190 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~-~L~~Lr~  190 (235)
                      ..+++|.+..+...... ...+++|+.|.+.++....    ..+..+..++.|+.|++++|.+.. .|..+. .+.+|++
T Consensus        99 ~~L~~L~L~~N~l~~~~-~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           99 PSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             TTCCEEECCSSCCCCEE-ECCCSSCEEEECCSSCCCS----GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             CCcCEEECcCCcCCCCC-ccccCCCCEEECCCCCCCC----CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence            44556666555544211 1127788999998888764    446678899999999999999985 566775 7999999


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      |+|++|.+..+|. .. .+++|++|++++|.+..+|+.++.+++|
T Consensus       174 L~Ls~N~l~~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L  216 (487)
T 3oja_A          174 LNLQYNFIYDVKG-QV-VFAKLKTLDLSSNKLAFMGPEFQSAAGV  216 (487)
T ss_dssp             EECTTSCCCEEEC-CC-CCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred             EecCCCccccccc-cc-cCCCCCEEECCCCCCCCCCHhHcCCCCc
Confidence            9999999998865 44 6999999999999999999888887765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.88  E-value=2.1e-09  Score=96.07  Aligned_cols=97  Identities=24%  Similarity=0.105  Sum_probs=83.3

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~  211 (235)
                      .+++++|.+.++....    ..+..|.++++|++|++++|.+..++ ..++.+.+|++|++++|.+..+|+. ++ ++++
T Consensus        25 ~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~   99 (549)
T 2z81_A           25 TAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSS   99 (549)
T ss_dssp             CTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTT
T ss_pred             CCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc-cCCC
Confidence            6799999999988764    34567899999999999999998665 6899999999999999999988876 88 9999


Q ss_pred             ccEEeCcCCCCcc--ccHhhcccCCC
Q 043825          212 LYTLNMPFSDIDH--IADEFWKMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~--lP~~i~~L~~L  235 (235)
                      |++|++++|.+..  +|..++++++|
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             CcEEECCCCcccccchhhhhhccCCc
Confidence            9999999998774  46677777654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.87  E-value=1.6e-09  Score=105.34  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             CeeeeeccCCCCc-------cCcCCCCCCCCCCcChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeeCCCCc
Q 043825            4 PETSTSQWNIPTR-------DEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGT   76 (235)
Q Consensus         4 p~l~lSY~~Lp~~-------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~~~g~   76 (235)
                      .++.+||+.||.+       ||+||+++.    |+++.++++|.++       ++.+++++++|+++||++...   ++.
T Consensus       366 ~~l~~s~~~L~~~~~~~~~~l~~f~~~~~----i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~  431 (1249)
T 3sfz_A          366 EAMSISVEMLREDIKDYYTDLSILQKDVK----VPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGK  431 (1249)
T ss_dssp             HHHHHHHHTSCTTTHHHHHHGGGSCTTCC----EEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSS
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCccCCCCe----eCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCC
Confidence            3578999999998       999999999    9999999999765       566899999999999999764   345


Q ss_pred             eeeEEeChhHHHHHHHhhcccc
Q 043825           77 IKTCSIRSRCWPSLLVVALNAE   98 (235)
Q Consensus        77 ~~~~~mhdlv~dla~~~~~~e~   98 (235)
                      ...|+|||+||++|+..+.++.
T Consensus       432 ~~~~~~h~l~~~~~~~~~~~~~  453 (1249)
T 3sfz_A          432 SFCYYLHDLQVDFLTEKNRSQL  453 (1249)
T ss_dssp             SEEEECCHHHHHHHHHHTGGGH
T ss_pred             ceEEEecHHHHHHHHhhhhHHH
Confidence            5679999999999999987663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.87  E-value=3.1e-09  Score=96.20  Aligned_cols=119  Identities=14%  Similarity=0.072  Sum_probs=82.9

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  187 (235)
                      ....+++|.+..+......+..+  +++|++|.+.++....    ..+..|..+++|++|++++|.+..+ |..++.+.+
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF----MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE----ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc----cChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            45677888887776654334444  7888888887776653    3456677888888888888887765 566778888


Q ss_pred             CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCccc-cHhhcccCC
Q 043825          188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDIDHI-ADEFWKMNK  234 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~  234 (235)
                      |++|++++|.+..++ +.+. .+++|++|++++|.+..+ |..++.+++
T Consensus       131 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~  178 (606)
T 3t6q_A          131 LESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQ  178 (606)
T ss_dssp             CCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred             ccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcc
Confidence            888888888777653 3444 577888888888877665 445555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.86  E-value=5.8e-09  Score=94.95  Aligned_cols=114  Identities=18%  Similarity=0.111  Sum_probs=91.3

Q ss_pred             CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ....++.|.+..+...... +.. +++|+.|.+.++....     + +.+..+++|+.|+|++|.+..+| .+..+.+|+
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~  134 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKD-----L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE  134 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-----C-TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCS
T ss_pred             cCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCCCCC-----C-hhhccCCCCCEEEecCCCCCCCc-cccCCCccC
Confidence            4567888888887765322 222 8999999999887753     2 35788999999999999988764 588899999


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      .|+|++|.+..+ ..++ .+++|+.|+|++|.+..+++ +..+++|
T Consensus       135 ~L~Ls~N~l~~l-~~l~-~l~~L~~L~Ls~N~l~~~~~-l~~l~~L  177 (605)
T 1m9s_A          135 SLYLGNNKITDI-TVLS-RLTKLDTLSLEDNQISDIVP-LAGLTKL  177 (605)
T ss_dssp             EEECCSSCCCCC-GGGG-SCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             EEECCCCccCCc-hhhc-ccCCCCEEECcCCcCCCchh-hccCCCC
Confidence            999999999888 6788 99999999999998888766 7776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.86  E-value=3.4e-09  Score=89.04  Aligned_cols=114  Identities=14%  Similarity=0.101  Sum_probs=89.1

Q ss_pred             CeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEe
Q 043825          114 NVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLK  192 (235)
Q Consensus       114 ~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~  192 (235)
                      ..+.+.+....... .+....++++.|.+.++....    ..+..|.++++|++|++++|.+..+ |..++.+.+|++|+
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEISPDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCccc-cCCCCCCCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            34555555444431 222237899999999888753    3456789999999999999999866 78899999999999


Q ss_pred             cccCCCcccchHHHhcCccccEEeCcCCCCccccHh-hcccCCC
Q 043825          193 LNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       193 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      +++|.+..+|..+.   ++|++|++++|.+..+|.. +..+++|
T Consensus       109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             CCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             CCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccC
Confidence            99999999998754   7999999999999888764 6666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.85  E-value=1.3e-10  Score=90.85  Aligned_cols=94  Identities=20%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      +++|+.|.+.++....     ++ .+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+| .++ .+++|+
T Consensus        47 l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~-~l~~L~  118 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE-KLVNLR  118 (198)
T ss_dssp             TTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH-HHHHSS
T ss_pred             CCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc-cCCCCC
Confidence            6777777776665542     23 566677777777777777777776666677777777777777766 566 677777


Q ss_pred             EEeCcCCCCccccH--hhcccCCC
Q 043825          214 TLNMPFSDIDHIAD--EFWKMNKL  235 (235)
Q Consensus       214 ~L~l~~~~l~~lP~--~i~~L~~L  235 (235)
                      +|++++|.+..+|.  .+..+++|
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L  142 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTC
T ss_pred             EEECCCCcCCchhHHHHHhcCCCC
Confidence            77777776666554  45555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.84  E-value=9.3e-10  Score=91.75  Aligned_cols=65  Identities=18%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             hhccCccCeEEEeCCccccc-chhcCCc---ccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcccc
Q 043825          159 CEMYKLLRALDLGYLVLNQY-LSEIENL---SLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       159 ~~~l~~Lr~L~l~~~~l~~l-p~~i~~L---~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      +..+++|+.|++++|.+... |+.++.+   .+|++|++++|.++.+|..+.   ++|++|++++|.+..+|
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~  288 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAP  288 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCc
Confidence            34555555556655555533 5555444   355666666655555555433   45566666666555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.84  E-value=4.7e-09  Score=92.40  Aligned_cols=88  Identities=20%  Similarity=0.182  Sum_probs=45.8

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~  211 (235)
                      +++|+.|.+.++....    ..+..|..+++|+.|++++|.+..+ |..+..+.+|++|++++|.+..+|.. +. ++++
T Consensus       103 l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~  177 (477)
T 2id5_A          103 LSNLTKLDISENKIVI----LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS-HLHG  177 (477)
T ss_dssp             CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT-TCTT
T ss_pred             CCCCCEEECCCCcccc----CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc-ccCC
Confidence            4445555444444332    2233445555555555555555433 34455555666666666655555543 44 5666


Q ss_pred             ccEEeCcCCCCcccc
Q 043825          212 LYTLNMPFSDIDHIA  226 (235)
Q Consensus       212 L~~L~l~~~~l~~lP  226 (235)
                      |+.|++++|.+..++
T Consensus       178 L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          178 LIVLRLRHLNINAIR  192 (477)
T ss_dssp             CCEEEEESCCCCEEC
T ss_pred             CcEEeCCCCcCcEeC
Confidence            666666666555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.83  E-value=1.2e-08  Score=85.14  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=76.5

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--C-----CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc---cch
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--Y-----PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ---YLS  180 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~-----~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~---lp~  180 (235)
                      ....+++|.+..+..... +..+  +     ++|+.|.+.++....    ..+..+..+++|+.|++++|.+..   +|.
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN----FSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC----CCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc----chHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            456778888887776533 2222  2     788888888877754    334667788888888888887542   455


Q ss_pred             hc--CCcccCcEEecccCCCccc---chHHHhcCccccEEeCcCCCCcccc
Q 043825          181 EI--ENLSLLRYLKLNIPSLKSL---PSSFFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       181 ~i--~~L~~Lr~L~l~~~~l~~l---P~~i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      .+  +.+.+|++|++++|.+..+   |..+..++++|++|++++|.+...+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            55  7788888888888888744   3333226788888888888776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.82  E-value=1.1e-08  Score=93.85  Aligned_cols=97  Identities=22%  Similarity=0.307  Sum_probs=84.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccch-HHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPS-SFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~~L~~  211 (235)
                      .+++++|.+.++....    ..+..|.+++.|++|++++|.+..+ |..++++.+|++|++++|.+..+|. .++ ++++
T Consensus        24 ~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~   98 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTN   98 (680)
T ss_dssp             CTTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred             CCCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc-cCCC
Confidence            6899999999988765    4456799999999999999998855 7789999999999999999999998 488 9999


Q ss_pred             ccEEeCcCCCCcccc-HhhcccCCC
Q 043825          212 LYTLNMPFSDIDHIA-DEFWKMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~lP-~~i~~L~~L  235 (235)
                      |++|++++|.+..+| ..++++++|
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             CCEEECCCCccCccChhHccccCCC
Confidence            999999999888887 467777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.80  E-value=1.3e-08  Score=84.96  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             hccCccCeEEEeCCcccccc---hh-cCCcccCcEEecccCCCcccc--hHHHhcCccccEEeCcCCCCccccHh
Q 043825          160 EMYKLLRALDLGYLVLNQYL---SE-IENLSLLRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIADE  228 (235)
Q Consensus       160 ~~l~~Lr~L~l~~~~l~~lp---~~-i~~L~~Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~~  228 (235)
                      ..+++|+.|++++|.+..+|   .. +..+.+|++|++++|.+...+  ..+. .+++|++|++++|.+..+|..
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~Ls~N~l~~ip~~  271 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD-WPSQLNSLNLSFTGLKQVPKG  271 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC-CCTTCCEEECTTSCCSSCCSS
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh-hcCCCCEEECCCCccChhhhh
Confidence            44445555555555444222   11 123444555555555444332  1222 344555555555544444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.80  E-value=1.2e-08  Score=89.75  Aligned_cols=99  Identities=15%  Similarity=0.082  Sum_probs=46.5

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY  190 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~  190 (235)
                      ..++++.+..+.....  +.+  +++|+.|.+.++....     ++  +..+++|++|++++|.++.+|  ++.+.+|++
T Consensus        42 ~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-----~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT-----LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             CCCCEEEccCCCcccC--hhhcccCCCCEEEccCCcCCe-----Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            3445555544443321  122  5555555555554432     11  444555555555555554443  445555555


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccc
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHI  225 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  225 (235)
                      |++++|.+..+|  ++ ++++|++|++++|.+..+
T Consensus       111 L~L~~N~l~~l~--~~-~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A          111 LNCDTNKLTKLD--VS-QNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             EECCSSCCSCCC--CT-TCTTCCEEECTTSCCSCC
T ss_pred             EECCCCcCCeec--CC-CCCcCCEEECCCCcccee
Confidence            555555554443  44 455555555555544443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=9.4e-09  Score=86.80  Aligned_cols=86  Identities=17%  Similarity=0.018  Sum_probs=68.7

Q ss_pred             CCCcceEEEec-CCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCcc
Q 043825          134 YPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~  211 (235)
                      +++|+.|.+.+ +....    ..+..|..+++|+.|+|++|.++.+| ..+..|.+|++|+|++|.+..+|..+. ....
T Consensus        30 ~~~L~~L~l~~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~~  104 (347)
T 2ifg_A           30 AENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLS  104 (347)
T ss_dssp             CSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCC
T ss_pred             CCCeeEEEccCCCCCCC----cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc-ccCC
Confidence            77889999886 76654    34567888999999999999988664 467889999999999999999988776 5555


Q ss_pred             ccEEeCcCCCCcc
Q 043825          212 LYTLNMPFSDIDH  224 (235)
Q Consensus       212 L~~L~l~~~~l~~  224 (235)
                      |+.|+|.+|.+..
T Consensus       105 L~~l~l~~N~~~c  117 (347)
T 2ifg_A          105 LQELVLSGNPLHC  117 (347)
T ss_dssp             CCEEECCSSCCCC
T ss_pred             ceEEEeeCCCccC
Confidence            9999998886653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.77  E-value=3.4e-08  Score=83.18  Aligned_cols=113  Identities=16%  Similarity=0.236  Sum_probs=72.6

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ....++++.+..+....  .+.+  +++|+.|.+.++....     .+. +..++.|+.|++++|.....+..+..+.+|
T Consensus        86 ~l~~L~~L~L~~n~i~~--~~~~~~l~~L~~L~l~~n~i~~-----~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L  157 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD-----ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGL  157 (347)
T ss_dssp             TCTTCCEEECCSSCCCC--CGGGTTCTTCSEEECTTSCCCC-----CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTC
T ss_pred             cCCcCCEEEccCCcccC--chHHcCCCcCCEEECcCCcccC-----chh-hccCCceeEEECCCCCCcccccchhhCCCC
Confidence            44567777776665542  2333  7777777777666543     222 667777777777777544334447777777


Q ss_pred             cEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      ++|++++|.+..++. +. .+++|++|++++|.+..+|. +..+++
T Consensus       158 ~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~l~~~~~-~~~l~~  200 (347)
T 4fmz_A          158 NYLTVTESKVKDVTP-IA-NLTDLYSLSLNYNQIEDISP-LASLTS  200 (347)
T ss_dssp             CEEECCSSCCCCCGG-GG-GCTTCSEEECTTSCCCCCGG-GGGCTT
T ss_pred             cEEEecCCCcCCchh-hc-cCCCCCEEEccCCccccccc-ccCCCc
Confidence            777777777776665 66 77777777777777666664 444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.77  E-value=2.1e-08  Score=83.45  Aligned_cols=117  Identities=9%  Similarity=-0.016  Sum_probs=85.9

Q ss_pred             CCCCeEEEEEEcCCCCcccc----cc-c-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc---cch-
Q 043825          111 SRKNVKRFCALEQQSDFAYL----DD-Y-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ---YLS-  180 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~----~~-~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~---lp~-  180 (235)
                      ....++.|.+..+.......    .. . +++|+.|.+.++....    ..+..+..+++|++|++++|.+..   ++. 
T Consensus       115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  190 (310)
T 4glp_A          115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA----FSCEQVRAFPALTSLDLSDNPGLGERGLMAA  190 (310)
T ss_dssp             CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC----CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT
T ss_pred             cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch----hhHHHhccCCCCCEEECCCCCCccchhhhHH
Confidence            45677888888877653111    11 1 7889999998887754    345677889999999999998652   433 


Q ss_pred             -hcCCcccCcEEecccCCCcccchH----HHhcCccccEEeCcCCCCccc-cHhhccc
Q 043825          181 -EIENLSLLRYLKLNIPSLKSLPSS----FFNYLSNLYTLNMPFSDIDHI-ADEFWKM  232 (235)
Q Consensus       181 -~i~~L~~Lr~L~l~~~~l~~lP~~----i~~~L~~L~~L~l~~~~l~~l-P~~i~~L  232 (235)
                       .++.+++|++|++++|.++.+|..    +. .+++|++|++++|.+..+ |..+..+
T Consensus       191 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          191 LCPHKFPAIQNLALRNTGMETPTGVCAALAA-AGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH-HTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             HhhhcCCCCCEEECCCCCCCchHHHHHHHHh-cCCCCCEEECCCCCCCccchhhHHhc
Confidence             346888999999999998877663    46 789999999999988766 7666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.75  E-value=1.6e-08  Score=91.37  Aligned_cols=41  Identities=10%  Similarity=0.237  Sum_probs=19.4

Q ss_pred             cEEecccCCCcccchHHHhcCccccEEeCcCCCCc-cccHhhc
Q 043825          189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID-HIADEFW  230 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~  230 (235)
                      ++|++++|.++.+|..++ ++++|++|++++|.+. .+|..+.
T Consensus       210 ~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          210 IFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             EEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             eEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHH
Confidence            445555554445555554 4555555555555332 3344433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=96.59  Aligned_cols=98  Identities=21%  Similarity=0.255  Sum_probs=82.8

Q ss_pred             cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-cccc-chhcCCcccCcEEecccCCCccc-chHHHhcC
Q 043825          133 YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LNQY-LSEIENLSLLRYLKLNIPSLKSL-PSSFFNYL  209 (235)
Q Consensus       133 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~l-p~~i~~L~~Lr~L~l~~~~l~~l-P~~i~~~L  209 (235)
                      ..+++++|.+.++....    ..+..|.++++|++|++++|. ...+ |..++++.+|++|+|++|.+..+ |..++ ++
T Consensus        22 lp~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l   96 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ-GL   96 (844)
T ss_dssp             SCTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-SC
T ss_pred             CCCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-CC
Confidence            57899999999988764    446778999999999999996 4455 78899999999999999999877 77888 99


Q ss_pred             ccccEEeCcCCCCcc-ccHh--hcccCCC
Q 043825          210 SNLYTLNMPFSDIDH-IADE--FWKMNKL  235 (235)
Q Consensus       210 ~~L~~L~l~~~~l~~-lP~~--i~~L~~L  235 (235)
                      ++|++|++++|.+.. +|..  ++++++|
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCC
Confidence            999999999997764 5654  7777664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.74  E-value=5.6e-09  Score=87.53  Aligned_cols=120  Identities=13%  Similarity=0.041  Sum_probs=87.9

Q ss_pred             CCCCeEEEEEEcCCCCcc-ccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCC-ccc--ccchhcCC
Q 043825          111 SRKNVKRFCALEQQSDFA-YLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYL-VLN--QYLSEIEN  184 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~-~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~--~lp~~i~~  184 (235)
                      ...+++++.+..+..... .....  +++|++|.+.++....    ..+..+..+++|+.|++++| .++  .+|..+..
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~  166 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  166 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence            446778888777654422 22222  8889999888876542    45667788899999999998 576  47777888


Q ss_pred             cccCcEEecccC-CCcc--cchHHHhcCc-cccEEeCcCCC--C--ccccHhhcccCCC
Q 043825          185 LSLLRYLKLNIP-SLKS--LPSSFFNYLS-NLYTLNMPFSD--I--DHIADEFWKMNKL  235 (235)
Q Consensus       185 L~~Lr~L~l~~~-~l~~--lP~~i~~~L~-~L~~L~l~~~~--l--~~lP~~i~~L~~L  235 (235)
                      +++|++|++++| .+..  +|..+. .++ +|++|++++|.  +  ..+|..+.++++|
T Consensus       167 ~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L  224 (336)
T 2ast_B          167 CSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL  224 (336)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence            889999999998 7774  677788 888 99999999884  3  4577766666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.74  E-value=5.2e-08  Score=85.62  Aligned_cols=63  Identities=25%  Similarity=0.320  Sum_probs=28.0

Q ss_pred             hhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcc
Q 043825          159 CEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       159 ~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      +..++.|+.|++++|.+..+|. +..+.+|++|++++|.+..+|. ++ .+++|+.|++++|.+..
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~-~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-IS-NLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GG-GCTTCSEEECCSSCCSC
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hc-CCCCCCEEECcCCcCCC
Confidence            3444444444444444443333 4444444444444444444433 33 44444444444443333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.73  E-value=1.7e-08  Score=88.77  Aligned_cols=89  Identities=19%  Similarity=0.084  Sum_probs=78.2

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      ++++++|.+.++....     .+ .+..++.|++|++++|.++.+|  ++.+.+|++|++++|.+..+|  ++ ++++|+
T Consensus        41 l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~-~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD-----MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT-PLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSCCCC-----CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT-TCTTCC
T ss_pred             cCCCCEEEccCCCccc-----Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC-CCCcCC
Confidence            8899999999987763     33 5889999999999999999886  899999999999999999986  88 999999


Q ss_pred             EEeCcCCCCccccHhhcccCCC
Q 043825          214 TLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       214 ~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +|++++|.+..+|  ++++++|
T Consensus       110 ~L~L~~N~l~~l~--~~~l~~L  129 (457)
T 3bz5_A          110 YLNCDTNKLTKLD--VSQNPLL  129 (457)
T ss_dssp             EEECCSSCCSCCC--CTTCTTC
T ss_pred             EEECCCCcCCeec--CCCCCcC
Confidence            9999999888887  6666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.67  E-value=3.2e-08  Score=84.76  Aligned_cols=96  Identities=18%  Similarity=0.114  Sum_probs=49.1

Q ss_pred             CCCcceEEEecCCCCCCCCcchhH-HhhccCccCeEEEeCCcc-----cccchhcCCcccCcEEecccCCCcc-----cc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQK-ICEMYKLLRALDLGYLVL-----NQYLSEIENLSLLRYLKLNIPSLKS-----LP  202 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~l-----~~lp~~i~~L~~Lr~L~l~~~~l~~-----lP  202 (235)
                      +++|++|.+.++.........+.+ .+..+++|+.|+|++|.+     ..+|..+..+++|++|++++|.+..     +|
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            556666666555442100000112 445566666666666665     3455555666666666666665542     34


Q ss_pred             hHHH-hcCccccEEeCcCCCCcc-----ccHhh
Q 043825          203 SSFF-NYLSNLYTLNMPFSDIDH-----IADEF  229 (235)
Q Consensus       203 ~~i~-~~L~~L~~L~l~~~~l~~-----lP~~i  229 (235)
                      ..+. .++++|++|++++|.+..     +|..+
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            4442 025666666666665554     55544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.66  E-value=3.2e-08  Score=83.49  Aligned_cols=76  Identities=17%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             chhHHhhccCccCeEEEeC-Ccccccc-hhcCCcccCcEEecccCCCcccch-HHHhcCccccEEeCcCCCCccccHhhc
Q 043825          154 DWQKICEMYKLLRALDLGY-LVLNQYL-SEIENLSLLRYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDHIADEFW  230 (235)
Q Consensus       154 ~~~~~~~~l~~Lr~L~l~~-~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~lP~~i~  230 (235)
                      .+|. +..+++|+.|+|++ |.+..+| ..++.|.+|++|+|++|.+..+|+ .+. +|++|+.|+|++|.+..+|..+.
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~  100 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALESLSWKTV  100 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSCCCSTTT
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCCCCccceeCHHHc
Confidence            3556 88888999999996 8888776 578899999999999999988876 457 89999999999998888887554


Q ss_pred             c
Q 043825          231 K  231 (235)
Q Consensus       231 ~  231 (235)
                      .
T Consensus       101 ~  101 (347)
T 2ifg_A          101 Q  101 (347)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.66  E-value=9.3e-09  Score=86.17  Aligned_cols=105  Identities=18%  Similarity=0.091  Sum_probs=56.9

Q ss_pred             CCCeEEEEEEcC-CCCcccccc-c--CCCcceEEEecC-CCCCCCCcchhHHhhccC-ccCeEEEeCCc--c--cccchh
Q 043825          112 RKNVKRFCALEQ-QSDFAYLDD-Y--YPHLHSLLYFTS-ESDHLDPIDWQKICEMYK-LLRALDLGYLV--L--NQYLSE  181 (235)
Q Consensus       112 ~~~~r~lsl~~~-~~~~~~~~~-~--~~~LrsL~~~~~-~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~--l--~~lp~~  181 (235)
                      ..++++|.+..+ .......+. .  +++|+.|.+.++ .....   .++..+..++ +|+.|++++|.  +  ..+|..
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~  217 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL  217 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH---HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence            345556655554 222111111 2  566666666655 33210   1345556666 66666666663  2  245555


Q ss_pred             cCCcccCcEEecccCC-Cc-ccchHHHhcCccccEEeCcCC
Q 043825          182 IENLSLLRYLKLNIPS-LK-SLPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       182 i~~L~~Lr~L~l~~~~-l~-~lP~~i~~~L~~L~~L~l~~~  220 (235)
                      +..+++|++|++++|. +. ..+..++ ++++|++|++++|
T Consensus       218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~  257 (336)
T 2ast_B          218 VRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRC  257 (336)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTC
T ss_pred             HhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCC
Confidence            5666666666666665 33 4555666 6666666666666

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.64  E-value=1e-07  Score=86.95  Aligned_cols=57  Identities=25%  Similarity=0.135  Sum_probs=30.6

Q ss_pred             CccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCc
Q 043825          163 KLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       163 ~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  223 (235)
                      ++|+.|++++|.++.+|.   .+.+|++|++++|.+..+|..++ ++++|+.|++++|.+.
T Consensus       241 ~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~-~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          241 SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLS  297 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGG-GSCTTCEEECCSCCCC
T ss_pred             CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHh-hccccCEEEecCCCCC
Confidence            444455555555444444   34455555555555555555555 5566666666655443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.63  E-value=3.6e-08  Score=89.11  Aligned_cols=105  Identities=14%  Similarity=0.105  Sum_probs=82.2

Q ss_pred             CeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEec
Q 043825          114 NVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKL  193 (235)
Q Consensus       114 ~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l  193 (235)
                      ++++|.+..+.... .+. .+++|+.|.+.++....     ++.   .+++|+.|++++|.++.+|. ++  .+|++|++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDV  187 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC
T ss_pred             CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEEC
Confidence            56666666665543 111 46788888888877754     222   57899999999999999998 66  89999999


Q ss_pred             ccCCCcccchHHHhcCccc-------cEEeCcCCCCccccHhhcccCCC
Q 043825          194 NIPSLKSLPSSFFNYLSNL-------YTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       194 ~~~~l~~lP~~i~~~L~~L-------~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++|.++.+|. +. .  +|       ++|++++|.+..+|.++.++++|
T Consensus       188 s~N~L~~lp~-~~-~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L  232 (571)
T 3cvr_A          188 STNLLESLPA-VP-V--RNHHSEETEIFFRCRENRITHIPENILSLDPT  232 (571)
T ss_dssp             CSSCCSSCCC-CC-----------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred             cCCCCCchhh-HH-H--hhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence            9999999998 66 4  77       99999999999999999888765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.62  E-value=3.9e-08  Score=86.43  Aligned_cols=81  Identities=15%  Similarity=0.176  Sum_probs=43.8

Q ss_pred             CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccE
Q 043825          135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYT  214 (235)
Q Consensus       135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~  214 (235)
                      ++|+.|.+.++....     ++ .+..+++|++|++++|.++.+|..+   .+|++|++++|.+..+| .++ ++++|++
T Consensus       131 ~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~-~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQ-NLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCT-TCTTCCE
T ss_pred             CCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-ccc-CCCCCCE
Confidence            455566555554432     22 3556666666666666655555433   25555666665555555 355 5555555


Q ss_pred             EeCcCCCCcccc
Q 043825          215 LNMPFSDIDHIA  226 (235)
Q Consensus       215 L~l~~~~l~~lP  226 (235)
                      |++++|.+..+|
T Consensus       200 L~l~~N~l~~l~  211 (454)
T 1jl5_A          200 IYADNNSLKKLP  211 (454)
T ss_dssp             EECCSSCCSSCC
T ss_pred             EECCCCcCCcCC
Confidence            555555444444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.62  E-value=8.6e-09  Score=97.74  Aligned_cols=73  Identities=18%  Similarity=0.081  Sum_probs=62.4

Q ss_pred             CeeeeeccCCCCc--------cCcCCCCCCCCCCcChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeeCCCC
Q 043825            4 PETSTSQWNIPTR--------DEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGG   75 (235)
Q Consensus         4 p~l~lSY~~Lp~~--------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~~~g   75 (235)
                      +.|++||+.||.+        ||+||+++.    |+++.++.+|+++|      ++.++.++++|+++|||+..     +
T Consensus       357 aaLelSYd~Lp~eelK~cFL~LAIFPed~~----I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d-----~  421 (1221)
T 1vt4_I          357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ-----P  421 (1221)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHTTSSCTTSC----EEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC-----S
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhCCCCCCC----CCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe-----C
Confidence            4678999999987        999999999    99999999999987      23588999999999999983     2


Q ss_pred             ceeeEEeChhHHHHHH
Q 043825           76 TIKTCSIRSRCWPSLL   91 (235)
Q Consensus        76 ~~~~~~mhdlv~dla~   91 (235)
                      ....|+|||++++++.
T Consensus       422 ~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          422 KESTISIPSIYLELKV  437 (1221)
T ss_dssp             SSSEEBCCCHHHHHHH
T ss_pred             CCCEEEehHHHHHHhc
Confidence            2346999999999663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.58  E-value=1.5e-07  Score=82.80  Aligned_cols=109  Identities=21%  Similarity=0.235  Sum_probs=87.2

Q ss_pred             CCCCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY  190 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~  190 (235)
                      .+..++++.+..+....  .+...++|+.|.+.++.....+     .   ..++|++|++++|.++.+| .++.+.+|++
T Consensus        89 ~~~~L~~L~l~~n~l~~--lp~~~~~L~~L~l~~n~l~~l~-----~---~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~  157 (454)
T 1jl5_A           89 LPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKALS-----D---LPPLLEYLGVSNNQLEKLP-ELQNSSFLKI  157 (454)
T ss_dssp             CCTTCSEEECCSSCCSS--CCCCCTTCCEEECCSSCCSCCC-----S---CCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred             CcCCCCEEEccCCcCCc--cccccCCCcEEECCCCccCccc-----C---CCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence            56788999988877663  2333689999999888775422     1   1268999999999999988 5999999999


Q ss_pred             EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      |++++|.++.+|..    ..+|++|++++|.+..+| +++++++|
T Consensus       158 L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L  197 (454)
T 1jl5_A          158 IDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFL  197 (454)
T ss_dssp             EECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred             EECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCC
Confidence            99999999998854    458999999999988898 57777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.57  E-value=1.2e-07  Score=86.53  Aligned_cols=107  Identities=17%  Similarity=0.148  Sum_probs=82.4

Q ss_pred             CCCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEE
Q 043825          112 RKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYL  191 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L  191 (235)
                      ...++.|.+..+...  ..+...++|+.|.+.++.....     +   ..+++|+.|++++|.++.+|   ..+.+|++|
T Consensus       180 ~~~L~~L~Ls~N~l~--~l~~~~~~L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L  246 (622)
T 3g06_A          180 PSGLQELSVSDNQLA--SLPTLPSELYKLWAYNNRLTSL-----P---ALPSGLKELIVSGNRLTSLP---VLPSELKEL  246 (622)
T ss_dssp             CTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSSC-----C---CCCTTCCEEECCSSCCSCCC---CCCTTCCEE
T ss_pred             CCCCcEEECCCCCCC--CCCCccchhhEEECcCCccccc-----C---CCCCCCCEEEccCCccCcCC---CCCCcCcEE
Confidence            355666666666544  2222367778888777766532     2   23478999999999999888   566889999


Q ss_pred             ecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          192 KLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       192 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++++|.++.+|.    .+++|++|++++|.+..+|..+.++++|
T Consensus       247 ~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L  286 (622)
T 3g06_A          247 MVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSE  286 (622)
T ss_dssp             ECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTT
T ss_pred             ECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhcccc
Confidence            999999999997    4679999999999999999999988875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.56  E-value=1.9e-08  Score=86.25  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             CCCeEEEEEEcCCCCccccccc------C---------CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY------Y---------PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN  176 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~------~---------~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~  176 (235)
                      ...+++|.+..+.........+      +         ++|++|.+.++.........+...+..++.|+.|++++|.+.
T Consensus       121 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  200 (386)
T 2ca6_A          121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  200 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            3567777777665531111111      2         788888887776642110012246778888888888888876


Q ss_pred             ------ccchhcCCcccCcEEecccCCC-----cccchHHHhcCccccEEeCcCCCCcc-----ccHhh
Q 043825          177 ------QYLSEIENLSLLRYLKLNIPSL-----KSLPSSFFNYLSNLYTLNMPFSDIDH-----IADEF  229 (235)
Q Consensus       177 ------~lp~~i~~L~~Lr~L~l~~~~l-----~~lP~~i~~~L~~L~~L~l~~~~l~~-----lP~~i  229 (235)
                            ..|..+..+++|++|++++|.+     ..+|..+. .+++|++|+|++|.+..     +|..+
T Consensus       201 ~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHHHHHHH
Confidence                  2344778888899999988888     57788888 88899999998887654     45555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.41  E-value=3.9e-07  Score=77.12  Aligned_cols=113  Identities=13%  Similarity=-0.068  Sum_probs=69.8

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhcc-CccCeEEEeCCcccccchhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMY-KLLRALDLGYLVLNQYLSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~~lp~~i~~L~~  187 (235)
                      ...+++++.+..+..........  ..++..+.+.++.....   .....|..+ ..++.|++++|.++.+|..+....+
T Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~  178 (350)
T 4ay9_X          102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ  178 (350)
T ss_dssp             CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred             hccccccccccccccccCCchhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhccccccccCCChhhccccc
Confidence            34566777776665542221111  44455555544322110   112233443 3577788888888888877777777


Q ss_pred             CcEEeccc-CCCcccchHH-HhcCccccEEeCcCCCCccccH
Q 043825          188 LRYLKLNI-PSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       188 Lr~L~l~~-~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~  227 (235)
                      |+.|.+++ |.++.+|... . .+++|++|++++|.++.+|.
T Consensus       179 L~~l~l~~~n~l~~i~~~~f~-~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDVFH-GASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTTTT-TEECCSEEECTTSCCCCCCS
T ss_pred             hhHHhhccCCcccCCCHHHhc-cCcccchhhcCCCCcCccCh
Confidence            88888865 5688888654 5 78888888888888888775

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.40  E-value=3.1e-07  Score=83.01  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             eeeeeccCCCCc-------cCcCCCCCCCCCCcChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeeCCCCce
Q 043825            5 ETSTSQWNIPTR-------DEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTI   77 (235)
Q Consensus         5 ~l~lSY~~Lp~~-------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~~~g~~   77 (235)
                      .+..||+.||.+       ||+||+|+.    |+.+.++.+|.++       .+.+.+++++|+++||++....   +..
T Consensus       367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~----i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~  432 (591)
T 1z6t_A          367 AMSISVEMLREDIKDYYTDLSILQKDVK----VPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKS  432 (591)
T ss_dssp             HHHHHHHTSCTTTHHHHHHGGGCCTTCC----EEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTE
T ss_pred             HHHHHHHhCCHHHHHHHHHccccCCCCc----cCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CCc
Confidence            467899999988       999999999    9999999999754       3457889999999999996542   445


Q ss_pred             eeEEeChhHHHHHHHhhc
Q 043825           78 KTCSIRSRCWPSLLVVAL   95 (235)
Q Consensus        78 ~~~~mhdlv~dla~~~~~   95 (235)
                      ..|+||+++|+++.....
T Consensus       433 ~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          433 FRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             EEEECCHHHHHHHHHHTG
T ss_pred             cEEEEcHHHHHHHHhhhh
Confidence            679999999999998743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.24  E-value=9.5e-07  Score=75.03  Aligned_cols=113  Identities=12%  Similarity=0.052  Sum_probs=68.5

Q ss_pred             CCeEEEEEEcCCCCccccccc-------CCCcceEEEecCCCCCCCCcchhHHhhccC-ccCeEEEeCCccccc-chh--
Q 043825          113 KNVKRFCALEQQSDFAYLDDY-------YPHLHSLLYFTSESDHLDPIDWQKICEMYK-LLRALDLGYLVLNQY-LSE--  181 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~-------~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~l-p~~--  181 (235)
                      ..++.|.+..+.........+       .++|+.|.+.++.........+...+..++ .|+.|++++|.+... +..  
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  188 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA  188 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence            567777776666542222111       247777777776654322112334455554 788888888877632 333  


Q ss_pred             --cCCc-ccCcEEecccCCCcc-----cchHHHhcC-ccccEEeCcCCCCcccc
Q 043825          182 --IENL-SLLRYLKLNIPSLKS-----LPSSFFNYL-SNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       182 --i~~L-~~Lr~L~l~~~~l~~-----lP~~i~~~L-~~L~~L~l~~~~l~~lP  226 (235)
                        +... .+|++|++++|.+..     +|..+. .+ ++|++|++++|.+...+
T Consensus       189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFS-SIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-HSCTTCCEEECCSSCCCCCC
T ss_pred             HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-cCCCCceEEECcCCCCCcHH
Confidence              3334 578888888887776     677776 54 47888888888766543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.21  E-value=1.8e-06  Score=73.27  Aligned_cols=111  Identities=18%  Similarity=0.133  Sum_probs=66.8

Q ss_pred             CeEEEEEEcCCCCccccccc--C-----CCcceEEEecCCCCCCCCcchhHHhhcc-CccCeEEEeCCcccccch-h---
Q 043825          114 NVKRFCALEQQSDFAYLDDY--Y-----PHLHSLLYFTSESDHLDPIDWQKICEMY-KLLRALDLGYLVLNQYLS-E---  181 (235)
Q Consensus       114 ~~r~lsl~~~~~~~~~~~~~--~-----~~LrsL~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~~lp~-~---  181 (235)
                      .+++|.+..+.........+  .     ++|+.|.+.++.........+...+..+ +.|+.|++++|.+...+. .   
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            67777777665543222222  1     7777777777765432111122234444 678888888887764332 2   


Q ss_pred             -cCC-cccCcEEecccCCCc-----ccchHHHhcCc-cccEEeCcCCCCccc
Q 043825          182 -IEN-LSLLRYLKLNIPSLK-----SLPSSFFNYLS-NLYTLNMPFSDIDHI  225 (235)
Q Consensus       182 -i~~-L~~Lr~L~l~~~~l~-----~lP~~i~~~L~-~L~~L~l~~~~l~~l  225 (235)
                       +.. ..+|++|++++|.+.     .++..+. .+. +|++|++++|.+...
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchh
Confidence             333 257888888888766     5556666 665 788888888866544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.16  E-value=7.3e-07  Score=77.72  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=44.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccC----ccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCccc-ch
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYK----LLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLKSL-PS  203 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~----~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~~l-P~  203 (235)
                      +++|++|.+.++.....   .....+..++    +|+.|++++|.+.     .+|..+..+++|++|++++|.+... +.
T Consensus        55 ~~~L~~L~Ls~n~l~~~---~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  131 (461)
T 1z7x_W           55 NPALAELNLRSNELGDV---GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ  131 (461)
T ss_dssp             CTTCCEEECTTCCCHHH---HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred             CCCcCEEeCCCCcCChH---HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence            45666666655443210   1122233344    4666666666654     3456666666666666666665422 22


Q ss_pred             HHHh----cCccccEEeCcCCCCc
Q 043825          204 SFFN----YLSNLYTLNMPFSDID  223 (235)
Q Consensus       204 ~i~~----~L~~L~~L~l~~~~l~  223 (235)
                      .+..    ..++|++|++++|.+.
T Consensus       132 ~l~~~l~~~~~~L~~L~L~~n~l~  155 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLEYCSLS  155 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHHhcCCCcceEEECCCCCCC
Confidence            2220    1345666666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.14  E-value=1.8e-06  Score=75.18  Aligned_cols=112  Identities=13%  Similarity=0.062  Sum_probs=83.6

Q ss_pred             CCCeEEEEEEcCCCCcccccc-c--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhc-CCcc
Q 043825          112 RKNVKRFCALEQQSDFAYLDD-Y--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEI-ENLS  186 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~-~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i-~~L~  186 (235)
                      +..+++|.+..+......... .  ++++++|.+.++.........++..+..+++|++|++++|.+.. .+..+ ..+.
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            346788888887765433333 2  89999999999886521111345678889999999999999863 23333 3344


Q ss_pred             ----cCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCcc
Q 043825          187 ----LLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       187 ----~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                          +|++|++++|.+.     .+|..+. ++++|++|++++|.+..
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCch
Confidence                6999999999987     5688888 99999999999997753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.08  E-value=6.5e-06  Score=69.55  Aligned_cols=116  Identities=13%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCe-EEEeCCccccc-chhcCCcc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRA-LDLGYLVLNQY-LSEIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~-L~l~~~~l~~l-p~~i~~L~  186 (235)
                      .+.++++|.+..+.........+  +++|+.|.+.++.....   ..+..|.+++.+.. +.+.+|.+..+ |..+..+.
T Consensus        28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~---i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~  104 (350)
T 4ay9_X           28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV---IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  104 (350)
T ss_dssp             CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE---ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred             cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc---cChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence            34567777777776663333333  67777777777664320   11223444444332 33444445444 23345555


Q ss_pred             cCcEEecccCCCc-------------------------ccchH-HHhcC-ccccEEeCcCCCCccccHhhc
Q 043825          187 LLRYLKLNIPSLK-------------------------SLPSS-FFNYL-SNLYTLNMPFSDIDHIADEFW  230 (235)
Q Consensus       187 ~Lr~L~l~~~~l~-------------------------~lP~~-i~~~L-~~L~~L~l~~~~l~~lP~~i~  230 (235)
                      +|++|++++|.+.                         .+|.. +. .+ ..|++|++++|.++++|..+.
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N~i~~i~~~~f  174 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVILWLNKNGIQEIHNSAF  174 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST-TSBSSCEEEECCSSCCCEECTTSS
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhccccccccccccchh-hcchhhhhhccccccccCCChhhc
Confidence            5555555554444                         44432 12 23 246667777777777766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.08  E-value=1.1e-06  Score=79.10  Aligned_cols=119  Identities=11%  Similarity=0.026  Sum_probs=68.3

Q ss_pred             CCeEEEEEEcCCCCccccccc---C-CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-----cchhcC
Q 043825          113 KNVKRFCALEQQSDFAYLDDY---Y-PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-----YLSEIE  183 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~---~-~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i~  183 (235)
                      ..+++|.+..+.........+   + .+|+.|.+.++....  ...+......+++|++|++++|.+..     ++....
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            456777776664432222222   2 337777776654211  00233444567777777777776541     333445


Q ss_pred             CcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          184 NLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       184 ~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      .+++|++|++++|.+.     .++..+. ++++|++|++++|.+..+|..+.++++
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~~~~  244 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIAR-NCRSLVSVKVGDFEILELVGFFKAAAN  244 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHH-HCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHh-hCCCCcEEeccCccHHHHHHHHhhhhH
Confidence            5667777777777654     4444555 677777777777766666665555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.05  E-value=2.4e-06  Score=73.17  Aligned_cols=110  Identities=10%  Similarity=-0.006  Sum_probs=65.1

Q ss_pred             CeEEEEEEcCCCCcccccc------c-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchh
Q 043825          114 NVKRFCALEQQSDFAYLDD------Y-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSE  181 (235)
Q Consensus       114 ~~r~lsl~~~~~~~~~~~~------~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~  181 (235)
                      ++++|.+..+.........      . .++|++|.+.++.........+...+...+.|+.|+|++|.+.     .++..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            4666666666553211111      1 3567777777665532110023344566777777777777765     34556


Q ss_pred             cCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCcc
Q 043825          182 IENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       182 i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      +....+|++|+|++|.+.     .++..+. ..++|++|+|++|.+..
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~-~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAR-EHPSLELLHLYFNELSS  253 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHH-HCSSCCEEECTTSSCCH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHH-hCCCCCEEeccCCCCCH
Confidence            666677777777777765     3445555 66777888887776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.99  E-value=2.5e-06  Score=76.65  Aligned_cols=120  Identities=13%  Similarity=0.113  Sum_probs=78.1

Q ss_pred             CCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-----cchhcC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-----YLSEIE  183 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i~  183 (235)
                      ...+++|.+..+......+..+   +++|++|.+.++......  .++..+.++++|++|++++|.+..     ++....
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD--GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH--HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH--HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            3467888888776543222222   789999988876432100  245566688999999999888652     333344


Q ss_pred             CcccCcEEecccCC--Cc--ccchHHHhcCccccEEeCcCC-CCccccHhhcccCC
Q 043825          184 NLSLLRYLKLNIPS--LK--SLPSSFFNYLSNLYTLNMPFS-DIDHIADEFWKMNK  234 (235)
Q Consensus       184 ~L~~Lr~L~l~~~~--l~--~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~  234 (235)
                      .+++|++|+++++.  +.  .++.-+. ++++|++|++++| .+..+|..+.++++
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~-~~~~L~~L~L~~~~~~~~l~~~~~~~~~  236 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVT-RCPNLKSLKLNRAVPLEKLATLLQRAPQ  236 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHH-HCTTCCEEECCTTSCHHHHHHHHHHCTT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHH-hCCCCcEEecCCCCcHHHHHHHHhcCCc
Confidence            66788999998876  21  2333345 6788999999888 66666666555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=1.8e-05  Score=64.59  Aligned_cols=62  Identities=23%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             hccCccCeEEEeCCcccc---cchhcCCcccCcEEecccCCCcccchHHHhcCc--cccEEeCcCCCCc
Q 043825          160 EMYKLLRALDLGYLVLNQ---YLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLS--NLYTLNMPFSDID  223 (235)
Q Consensus       160 ~~l~~Lr~L~l~~~~l~~---lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~--~L~~L~l~~~~l~  223 (235)
                      .+++.|+.|+|++|.+..   +|..+..+.+|++|+|++|.+..+ ..+. .+.  +|+.|+|++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~-~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD-KIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG-GGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh-hcccCCcceEEccCCcCc
Confidence            567788888888888764   345666788888888888887766 3444 555  8888888888554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.91  E-value=1.4e-05  Score=65.23  Aligned_cols=80  Identities=25%  Similarity=0.202  Sum_probs=63.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcc--cCcEEecccCCCc-ccc-------h
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLS--LLRYLKLNIPSLK-SLP-------S  203 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~--~Lr~L~l~~~~l~-~lP-------~  203 (235)
                      +++|++|.+.++......  .++..+..+++|+.|+|++|.+..+ ..+..+.  +|++|+|++|.+. .+|       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             CTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            789999999999987643  4556788999999999999999865 3344454  9999999999976 354       2


Q ss_pred             HHHhcCccccEEeC
Q 043825          204 SFFNYLSNLYTLNM  217 (235)
Q Consensus       204 ~i~~~L~~L~~L~l  217 (235)
                      .+. .+++|+.||=
T Consensus       246 il~-~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRE-RFPKLLRLDG  258 (267)
T ss_dssp             HHH-HCTTCCEESS
T ss_pred             HHH-HCcccCeECC
Confidence            356 8999999973

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.91  E-value=4.5e-06  Score=71.40  Aligned_cols=112  Identities=15%  Similarity=0.067  Sum_probs=81.4

Q ss_pred             CCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHh-hccCccCeEEEeCCccc-----ccchhc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKIC-EMYKLLRALDLGYLVLN-----QYLSEI  182 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~l~-----~lp~~i  182 (235)
                      ...++.|.+..+.........+   +++++.|.+.++.........+...+ ...+.|+.|+|++|.+.     .++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            3578899888887653222223   67899999998877531100122222 24688999999999986     366677


Q ss_pred             CCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCcc
Q 043825          183 ENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       183 ~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      ....+|++|+|++|.+.     .++..+. ..++|++|+|++|.+..
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCH
Confidence            88899999999999886     3456677 78899999999998764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.77  E-value=1.2e-05  Score=61.92  Aligned_cols=112  Identities=7%  Similarity=0.116  Sum_probs=80.9

Q ss_pred             CCCCeEEEEEEcC-CCCcc----ccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----cc
Q 043825          111 SRKNVKRFCALEQ-QSDFA----YLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QY  178 (235)
Q Consensus       111 ~~~~~r~lsl~~~-~~~~~----~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~l  178 (235)
                      ....+++|.+..+ .....    ....+  .+.|+.|.+.++.........+...+...+.|+.|+|++|.+.     .+
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4556888888876 55421    11112  6889999998887653111134456677789999999999986     36


Q ss_pred             chhcCCcccCcEEec--ccCCCc-----ccchHHHhcCccccEEeCcCCCCc
Q 043825          179 LSEIENLSLLRYLKL--NIPSLK-----SLPSSFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       179 p~~i~~L~~Lr~L~l--~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~  223 (235)
                      ...+.....|++|++  ++|.+.     .+...+. ..++|++|++++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence            777888889999999  778876     3556666 7789999999999664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.71  E-value=1.5e-05  Score=61.27  Aligned_cols=90  Identities=9%  Similarity=0.030  Sum_probs=68.4

Q ss_pred             CCCcceEEEecC-CCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCcc-----cc
Q 043825          134 YPHLHSLLYFTS-ESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLKS-----LP  202 (235)
Q Consensus       134 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~~-----lP  202 (235)
                      .+.+++|.+.++ .........+...+...+.|++|+|++|.+.     .+...+.....|++|+|++|.+..     +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            788999999887 5542111134456777889999999999986     355666667889999999998873     56


Q ss_pred             hHHHhcCccccEEeC--cCCCCcc
Q 043825          203 SSFFNYLSNLYTLNM--PFSDIDH  224 (235)
Q Consensus       203 ~~i~~~L~~L~~L~l--~~~~l~~  224 (235)
                      ..+. ..++|++|+|  ++|.+..
T Consensus       115 ~~L~-~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          115 EALQ-SNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HGGG-GCSSCCEEECCCCSSCCCH
T ss_pred             HHHH-hCCCceEEEecCCCCCCCH
Confidence            6777 7889999999  7787653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.65  E-value=4.1e-05  Score=68.70  Aligned_cols=88  Identities=14%  Similarity=0.241  Sum_probs=44.2

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecc-------------------
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLN-------------------  194 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~-------------------  194 (235)
                      +++|++|.+..+.........++..+.++++|+.|++++|.+..+|..+..+++|++|+++                   
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            4555555554444321111133444555666666666666555444444444444444443                   


Q ss_pred             --------cCCCcccchHHHhcCccccEEeCcCCCC
Q 043825          195 --------IPSLKSLPSSFFNYLSNLYTLNMPFSDI  222 (235)
Q Consensus       195 --------~~~l~~lP~~i~~~L~~L~~L~l~~~~l  222 (235)
                              ++....+|..+. .+++|++|++++|.+
T Consensus       271 ~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPILFP-FAAQIRKLDLLYALL  305 (592)
T ss_dssp             TCCEEEETTCCTTTGGGGGG-GGGGCCEEEETTCCC
T ss_pred             cccccCccccchhHHHHHHh-hcCCCcEEecCCCcC
Confidence                    222334555555 666677777766643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=7.2e-05  Score=62.47  Aligned_cols=96  Identities=20%  Similarity=0.057  Sum_probs=74.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCc-EEecccCCCcccchHHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLR-YLKLNIPSLKSLPSSFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr-~L~l~~~~l~~lP~~i~~~L~~  211 (235)
                      +++|+++.+.++....    .....|..+.+|+.+++..+ +..+++ .+..+.+|+ .+.+.. .++.+++....++.+
T Consensus       225 ~~~L~~l~L~~n~i~~----I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT----IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCE----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcce----ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            6788999888766553    34567899999999999987 776654 578899999 999988 788887544338999


Q ss_pred             ccEEeCcCCCCccccH-hhcccCCC
Q 043825          212 LYTLNMPFSDIDHIAD-EFWKMNKL  235 (235)
Q Consensus       212 L~~L~l~~~~l~~lP~-~i~~L~~L  235 (235)
                      |+.++++++.+..++. .+..+++|
T Consensus       299 L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          299 LRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             EEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             CCEEEeCCCccCccchhhhcCCcch
Confidence            9999999888988876 45555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.52  E-value=0.00036  Score=59.39  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=27.0

Q ss_pred             cCccCeEEEeCCccc-ccchhc---CCcccCcEEecccCCCcc-----cchHHHhcCccccEEeCcCCCC
Q 043825          162 YKLLRALDLGYLVLN-QYLSEI---ENLSLLRYLKLNIPSLKS-----LPSSFFNYLSNLYTLNMPFSDI  222 (235)
Q Consensus       162 l~~Lr~L~l~~~~l~-~lp~~i---~~L~~Lr~L~l~~~~l~~-----lP~~i~~~L~~L~~L~l~~~~l  222 (235)
                      +++|++|+|.+|.+. ..+..+   ..+++|++|+|+.|.+..     ++..+. ++++|+.|++++|.+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD-KIKHLKFINMKYNYL  319 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH-HHTTCSEEECCSBBC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc-cCCcceEEECCCCcC
Confidence            445555555554443 111111   234455555555554442     333334 455555555555533

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.49  E-value=0.00011  Score=62.67  Aligned_cols=108  Identities=13%  Similarity=0.089  Sum_probs=70.6

Q ss_pred             CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhh--ccCccCeEEEeCC--c------ccccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICE--MYKLLRALDLGYL--V------LNQYL  179 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~--~l~~Lr~L~l~~~--~------l~~lp  179 (235)
                      ....+++|.+.++...  ..+.. .++|+.|.+..+....    .....+.  .+++|+.|+|+.+  .      +..+.
T Consensus       170 ~~P~L~~L~L~g~~~l--~l~~~~~~~L~~L~L~~~~l~~----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL--SIGKKPRPNLKSLEIISGGLPD----SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             TCTTCCEEEEECCBTC--BCCSCBCTTCSEEEEECSBCCH----HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             cCCCCcEEEEeCCCCc--eeccccCCCCcEEEEecCCCCh----HHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3468999999876321  22224 8899999998766532    1222333  7899999999632  1      22222


Q ss_pred             hhc--CCcccCcEEecccCCCcc-cchHHHh--cCccccEEeCcCCCCcc
Q 043825          180 SEI--ENLSLLRYLKLNIPSLKS-LPSSFFN--YLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       180 ~~i--~~L~~Lr~L~l~~~~l~~-lP~~i~~--~L~~L~~L~l~~~~l~~  224 (235)
                      ..+  ..+++|++|++++|.+.. .+..+..  .+++|++|+|+.|.+..
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            223  357899999999988752 3333430  47899999999997764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.47  E-value=1.2e-05  Score=72.06  Aligned_cols=108  Identities=19%  Similarity=0.124  Sum_probs=59.6

Q ss_pred             CCCeEEEEEEcCC-CCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc--cc--ccchhcC
Q 043825          112 RKNVKRFCALEQQ-SDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV--LN--QYLSEIE  183 (235)
Q Consensus       112 ~~~~r~lsl~~~~-~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--l~--~lp~~i~  183 (235)
                      ..++++|.+..+. .........   +++|+.|.+.++.........+......+++|+.|+++++.  +.  .++.-+.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            3467777777652 221111112   77788887776653221111233333456677777777765  22  2333334


Q ss_pred             CcccCcEEecccC-CCcccchHHHhcCccccEEeCcCC
Q 043825          184 NLSLLRYLKLNIP-SLKSLPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       184 ~L~~Lr~L~l~~~-~l~~lP~~i~~~L~~L~~L~l~~~  220 (235)
                      .+++|++|++++| .+..+|..+. ++++|+.|++..+
T Consensus       209 ~~~~L~~L~L~~~~~~~~l~~~~~-~~~~L~~L~l~~~  245 (594)
T 2p1m_B          209 RCPNLKSLKLNRAVPLEKLATLLQ-RAPQLEELGTGGY  245 (594)
T ss_dssp             HCTTCCEEECCTTSCHHHHHHHHH-HCTTCSEEECSBC
T ss_pred             hCCCCcEEecCCCCcHHHHHHHHh-cCCcceEcccccc
Confidence            4577777777776 3556666666 6777777765433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.40  E-value=0.0002  Score=54.55  Aligned_cols=86  Identities=9%  Similarity=-0.028  Sum_probs=57.3

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-cc-ccchhcCCc----ccCcEEecccCC-Cccc-chHH
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LN-QYLSEIENL----SLLRYLKLNIPS-LKSL-PSSF  205 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~-~lp~~i~~L----~~Lr~L~l~~~~-l~~l-P~~i  205 (235)
                      ..+|+.|.+.++....    .--..+..+++|+.|+|++|. ++ .--..+..+    .+|++|++++|. ++.- -..+
T Consensus        60 ~~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L  135 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL  135 (176)
T ss_dssp             CCCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred             CceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence            4567888888776543    122345788888999998886 65 223445554    368899998874 6521 1345


Q ss_pred             HhcCccccEEeCcCC-CCcc
Q 043825          206 FNYLSNLYTLNMPFS-DIDH  224 (235)
Q Consensus       206 ~~~L~~L~~L~l~~~-~l~~  224 (235)
                      . ++++|++|++++| .++.
T Consensus       136 ~-~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 H-HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             G-GCTTCCEEEEESCTTCCC
T ss_pred             h-cCCCCCEEECCCCCCCCc
Confidence            6 7888999999888 5553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.90  E-value=0.0012  Score=47.54  Aligned_cols=52  Identities=21%  Similarity=0.199  Sum_probs=24.4

Q ss_pred             eEEEeCCccc--ccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC
Q 043825          167 ALDLGYLVLN--QYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       167 ~L~l~~~~l~--~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~  220 (235)
                      +++.+++.++  .+|..+.  .+|++|+|++|.|+.+|......+.+|++|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3444444444  4444322  23455555555555555443224555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.57  E-value=0.0028  Score=52.68  Aligned_cols=100  Identities=11%  Similarity=-0.010  Sum_probs=74.7

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccC-eEEEeCCcccccc-hhcCCccc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLR-ALDLGYLVLNQYL-SEIENLSL  187 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr-~L~l~~~~l~~lp-~~i~~L~~  187 (235)
                      ...++.+.+..+.........+  +++|+++.+.++ ...    .....|..+..|+ .+++.. .++.++ ..+..+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~----I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT----IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE----ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce----ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            4566777776655543223333  889999988775 322    4457899999999 999998 677664 67889999


Q ss_pred             CcEEecccCCCcccchHHHhcCccccEEeC
Q 043825          188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNM  217 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l  217 (235)
                      |+.++++++.+..++.....++.+|+++..
T Consensus       299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 LRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999999998854438889988753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.07  E-value=0.02  Score=43.45  Aligned_cols=86  Identities=9%  Similarity=0.028  Sum_probs=61.9

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhcc----CccCeEEEeCCc-cc-ccchhcC
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMY----KLLRALDLGYLV-LN-QYLSEIE  183 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l----~~Lr~L~l~~~~-l~-~lp~~i~  183 (235)
                      .-.+.+|.+..+.....-+..+  +++|++|.+.++.....   .-...+..+    ++|+.|++++|. ++ .=-..+.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            4468999999887664444444  99999999999875321   122334543    479999999986 76 2234577


Q ss_pred             CcccCcEEecccCC-Ccc
Q 043825          184 NLSLLRYLKLNIPS-LKS  200 (235)
Q Consensus       184 ~L~~Lr~L~l~~~~-l~~  200 (235)
                      .+++|++|++++|. ++.
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            89999999999985 654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.85  E-value=0.13  Score=43.93  Aligned_cols=90  Identities=10%  Similarity=0.041  Sum_probs=54.1

Q ss_pred             CCCcceEEEecCCCCCCC-CcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCcc
Q 043825          134 YPHLHSLLYFTSESDHLD-PIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~  211 (235)
                      +++|+++.+.++...... .......|..+++|+.+.+.. .++.++ ..+..+.+|+.+.+..+ +..++.....++ +
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G  346 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence            667777777665442100 002345677777777777773 355553 35666777888877543 666655443256 8


Q ss_pred             ccEEeCcCCCCcccc
Q 043825          212 LYTLNMPFSDIDHIA  226 (235)
Q Consensus       212 L~~L~l~~~~l~~lP  226 (235)
                      |+.+.+.+|.+..++
T Consensus       347 L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          347 IKEVKVEGTTPPQVF  361 (401)
T ss_dssp             CCEEEECCSSCCBCC
T ss_pred             CCEEEEcCCCCcccc
Confidence            888888777555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.69  E-value=0.12  Score=44.30  Aligned_cols=45  Identities=9%  Similarity=0.045  Sum_probs=24.6

Q ss_pred             hcCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCcccc
Q 043825          181 EIENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       181 ~i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      .+..+.+|+.+.+.++.+.     .++......+.+|+.+.+.. .+..++
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~  315 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG  315 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence            3455666666666655443     45443322666677776663 355554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.98  E-value=0.047  Score=42.16  Aligned_cols=110  Identities=11%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             CCCeEEEEEEcC-CCCcc----ccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccc
Q 043825          112 RKNVKRFCALEQ-QSDFA----YLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYL  179 (235)
Q Consensus       112 ~~~~r~lsl~~~-~~~~~----~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp  179 (235)
                      ...+++|.+..+ .+...    ....+  .+.|+.|.+.++.........+...+..=+.|+.|+|++|.+.     .+-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            445777777653 33311    11222  7788899888877753211145566777788999999999876     455


Q ss_pred             hhcCCcccCcEEecccCC---Cc-----ccchHHHhcCccccEEeCcCCCC
Q 043825          180 SEIENLSLLRYLKLNIPS---LK-----SLPSSFFNYLSNLYTLNMPFSDI  222 (235)
Q Consensus       180 ~~i~~L~~Lr~L~l~~~~---l~-----~lP~~i~~~L~~L~~L~l~~~~l  222 (235)
                      +.+..=..|+.|+|+++.   +.     .+-..+. .=+.|+.|+++.+.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCCc
Confidence            556666679999998653   33     2334455 557888999887743

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.80  E-value=0.086  Score=37.66  Aligned_cols=35  Identities=20%  Similarity=0.078  Sum_probs=24.9

Q ss_pred             ccCeEEEeCCcccccchh-cCCcccCcEEecccCCC
Q 043825          164 LLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSL  198 (235)
Q Consensus       164 ~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l  198 (235)
                      +|+.|+|++|.++.+|.. +..+.+|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            477778888877777654 46677778888877754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.54  E-value=0.19  Score=38.74  Aligned_cols=86  Identities=13%  Similarity=0.050  Sum_probs=59.7

Q ss_pred             CCCcceEEEecC-CCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCc-----ccc
Q 043825          134 YPHLHSLLYFTS-ESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLK-----SLP  202 (235)
Q Consensus       134 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~-----~lP  202 (235)
                      .+.|+.|.+.++ .........+-..+..-..|+.|+|++|.+.     .+-+.+..=+.|+.|+|++|.|.     .|-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            678899988764 3321110124455677788999999999986     44555555678999999999886     333


Q ss_pred             hHHHhcCccccEEeCcCC
Q 043825          203 SSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       203 ~~i~~~L~~L~~L~l~~~  220 (235)
                      +.+. .-..|+.|+|++|
T Consensus       120 ~aL~-~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTL-VTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTT-TTCCCSEEECCCC
T ss_pred             HHHh-hCCceeEEECCCC
Confidence            4444 4567999999865

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.02  E-value=1.3  Score=37.01  Aligned_cols=60  Identities=15%  Similarity=0.159  Sum_probs=35.2

Q ss_pred             HHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCccccEEeC
Q 043825          157 KICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNM  217 (235)
Q Consensus       157 ~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l  217 (235)
                      ..|..+.+|+.+.+.++.++.++ ..+.++.+|+.+.+..+ ++.++.....++.+|+.+.+
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            35666667777777666666554 34566667777777543 55555433215566666655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.52  E-value=0.53  Score=39.74  Aligned_cols=63  Identities=19%  Similarity=0.311  Sum_probs=39.5

Q ss_pred             hHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC
Q 043825          156 QKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       156 ~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~  220 (235)
                      ...|..+.+|+.+++..+ ++.+. ..+..+.+|+.+.+..+ ++.++.....++.+|+.+++..+
T Consensus       313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            345667777777777543 44443 35667777777777654 66665543326677777777554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=81.36  E-value=2.1  Score=35.63  Aligned_cols=85  Identities=12%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL  212 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L  212 (235)
                      +..|+++.+...-. .    .-...|..+..|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++.....++.+|
T Consensus       239 ~~~L~~i~lp~~v~-~----I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          239 MKALDEIAIPKNVT-S----IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             CSSCCEEEECTTCC-E----ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             CccceEEEcCCCcc-E----eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            56777777754321 1    23456788888988888654 554543 56778899999998888888876554377888


Q ss_pred             cEEeCcCCCCccc
Q 043825          213 YTLNMPFSDIDHI  225 (235)
Q Consensus       213 ~~L~l~~~~l~~l  225 (235)
                      +.+.+..+ ++.+
T Consensus       313 ~~i~lp~~-l~~I  324 (379)
T 4h09_A          313 SSVTLPTA-LKTI  324 (379)
T ss_dssp             CEEECCTT-CCEE
T ss_pred             CEEEcCcc-ccEE
Confidence            88887543 4444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=81.20  E-value=3.3  Score=34.73  Aligned_cols=62  Identities=16%  Similarity=0.217  Sum_probs=36.5

Q ss_pred             HHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC
Q 043825          157 KICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       157 ~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~  220 (235)
                      ..|..+.+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++.....++.+|+.+++.++
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            45566666666666543 33332 34566677777777543 66665543326777777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=81.17  E-value=2.7  Score=35.30  Aligned_cols=93  Identities=12%  Similarity=0.093  Sum_probs=54.3

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL  212 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L  212 (235)
                      +..|+++.+.+....     .-...|.++..|+.+.+.. .+..+++ .+..+.+|+.+.+..+ ++.+......++.+|
T Consensus       264 c~~L~~i~lp~~~~~-----I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          264 CAYLASVKMPDSVVS-----IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             CSSCCEEECCTTCCE-----ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             cccccEEecccccce-----ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            556666665433221     2345667778888877753 3555543 4566778888888653 666655433267788


Q ss_pred             cEEeCcCCCCccccH-hhcccCC
Q 043825          213 YTLNMPFSDIDHIAD-EFWKMNK  234 (235)
Q Consensus       213 ~~L~l~~~~l~~lP~-~i~~L~~  234 (235)
                      +.+.+..+ +..++. .+..+.+
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTT
T ss_pred             CEEEECcc-cCEEhHhHhhCCCC
Confidence            88877543 555543 3334433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.15
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.09
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.03
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.0
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.99
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.74
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.73
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.72
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.71
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.19
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.99
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.85
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.81
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.65
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.93

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=7.7e-12  Score=89.16  Aligned_cols=101  Identities=14%  Similarity=0.047  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecc
Q 043825          117 RFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLN  194 (235)
Q Consensus       117 ~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~  194 (235)
                      .+.+..+...  ..+.+  +++++.|.+.++...     .+|..+..+++|++|++++|.++.+|. ++.+.+|++|+++
T Consensus         2 ~L~Ls~n~l~--~l~~l~~l~~L~~L~ls~N~l~-----~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~   73 (124)
T d1dcea3           2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLC   73 (124)
T ss_dssp             EEECTTSCCS--SCCCGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             EEEcCCCCCC--CCcccccCCCCCEEECCCCccC-----cchhhhhhhhcccccccccccccccCc-cccccccCeEECC
Confidence            4455555554  23334  889999999988876     355678899999999999999998874 8999999999999


Q ss_pred             cCCCcccch--HHHhcCccccEEeCcCCCCcccc
Q 043825          195 IPSLKSLPS--SFFNYLSNLYTLNMPFSDIDHIA  226 (235)
Q Consensus       195 ~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP  226 (235)
                      +|.+..+|.  .++ .+++|++|++++|.+...|
T Consensus        74 ~N~i~~~~~~~~l~-~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          74 NNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             SSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSS
T ss_pred             CCccCCCCCchhhc-CCCCCCEEECCCCcCCcCc
Confidence            999998873  677 8999999999999765443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=2.3e-11  Score=86.63  Aligned_cols=90  Identities=18%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             ceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeC
Q 043825          138 HSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNM  217 (235)
Q Consensus       138 rsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l  217 (235)
                      |.|.+.++....     ++ .+..++.|+.|++++|.++.+|+.++.+.+|++|++++|.++.+| .++ ++++|++|++
T Consensus         1 R~L~Ls~n~l~~-----l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~-~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV-----LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA-NLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS-----CC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT-TCSSCCEEEC
T ss_pred             CEEEcCCCCCCC-----Cc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccc-cccccCeEEC
Confidence            567777777753     32 378899999999999999999999999999999999999999997 488 9999999999


Q ss_pred             cCCCCccccH--hhcccCCC
Q 043825          218 PFSDIDHIAD--EFWKMNKL  235 (235)
Q Consensus       218 ~~~~l~~lP~--~i~~L~~L  235 (235)
                      ++|.+..+|.  .++++++|
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTC
T ss_pred             CCCccCCCCCchhhcCCCCC
Confidence            9998887763  56666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.7e-11  Score=89.54  Aligned_cols=117  Identities=12%  Similarity=0.060  Sum_probs=92.4

Q ss_pred             CCCCeEEEEEEcCCCCcccccc-c-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhc-CCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDD-Y-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEI-ENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~-~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~  187 (235)
                      ...++|.|.+.++.+... ... . +++|+.|.+.++....     + +.+..++.|+.|++++|.++.+|+.+ ..+.+
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-----l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-----c-CCcccCcchhhhhcccccccCCCccccccccc
Confidence            455789999998887632 222 2 8899999999988753     3 34788999999999999999887654 57899


Q ss_pred             CcEEecccCCCcccch--HHHhcCccccEEeCcCCCCccccH----hhcccCCC
Q 043825          188 LRYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDIDHIAD----EFWKMNKL  235 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~L  235 (235)
                      |+.|++++|.+..++.  .+. .+++|++|++++|.+..+|.    .+..+++|
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~-~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L  141 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV  141 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred             cccceeccccccccccccccc-cccccchhhcCCCccccccchHHHHHHHCCCc
Confidence            9999999999988874  567 89999999999998888774    45566554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=8.4e-11  Score=87.53  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=59.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      ..++|.|.+.++....     ++..+..+++|++|++++|.++.++ .+..+++|++|++++|.+..+|+.+...+++|+
T Consensus        17 ~~~lr~L~L~~n~I~~-----i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             TTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcEEECCCCCCCc-----cCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            4566777777666653     3344456667777777777776663 366677777777777777777665432567777


Q ss_pred             EEeCcCCCCccccH--hhcccCC
Q 043825          214 TLNMPFSDIDHIAD--EFWKMNK  234 (235)
Q Consensus       214 ~L~l~~~~l~~lP~--~i~~L~~  234 (235)
                      +|++++|.+..++.  .+..+++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~  113 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKS  113 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTT
T ss_pred             cceeccccccccccccccccccc
Confidence            77777776666553  3444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=3.3e-10  Score=86.30  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=88.3

Q ss_pred             CCCCeEEEEEEcCCCCc-cccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcc
Q 043825          111 SRKNVKRFCALEQQSDF-AYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLS  186 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~-~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~  186 (235)
                      .+..+++|.+..+.... .....+  +++|+.|.+.++....    ..+..+..++.|+.|++++|.++.+|+ .+.++.
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~----~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc----ccccccccccccceeeeccccccccCHHHHhCCC
Confidence            45788999999888753 223333  8899999998888765    456788899999999999999997755 578899


Q ss_pred             cCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcc
Q 043825          187 LLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       187 ~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      +|++|+|++|.|+.+|+.....+++|++|+|++|.+..
T Consensus       103 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            99999999999999987643289999999999985543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=5.3e-10  Score=85.13  Aligned_cols=99  Identities=23%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchH-HHhcCc
Q 043825          133 YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLS  210 (235)
Q Consensus       133 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~  210 (235)
                      +.++++.|.+.++.....   .....|..+++|+.|++++|.+..+ +..+..+.+|++|++++|++..+|+. +. +++
T Consensus        27 lp~~l~~L~Ls~N~i~~~---~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~-~l~  102 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRI---SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLH  102 (192)
T ss_dssp             CCTTCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST-TCT
T ss_pred             CCCCCCEEEeCCCCCccc---ccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHh-CCC
Confidence            367899999999888531   2356789999999999999998855 56788899999999999999999876 46 899


Q ss_pred             cccEEeCcCCCCccccHh-hcccCCC
Q 043825          211 NLYTLNMPFSDIDHIADE-FWKMNKL  235 (235)
Q Consensus       211 ~L~~L~l~~~~l~~lP~~-i~~L~~L  235 (235)
                      +|++|+|++|.+..+|.+ +..+++|
T Consensus       103 ~L~~L~L~~N~l~~i~~~~f~~l~~L  128 (192)
T d1w8aa_         103 QLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             cccccccCCccccccCHHHhcCCccc
Confidence            999999999999999764 4455543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=1.4e-09  Score=83.25  Aligned_cols=113  Identities=15%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  188 (235)
                      ...+++++.+..+...  ..+.+  +++|+.|.+.++....      ...+..+++|+.|++++|.+..+| .+..+.+|
T Consensus        82 ~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L  152 (199)
T d2omxa2          82 NLTKLVDILMNNNQIA--DITPLANLTNLTGLTLFNNQITD------IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSL  152 (199)
T ss_dssp             TCTTCCEEECCSSCCC--CCGGGTTCTTCSEEECCSSCCCC------CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTC
T ss_pred             CCcccccccccccccc--ccccccccccccccccccccccc------ccccchhhhhHHhhhhhhhhcccc-cccccccc
Confidence            3456777777666544  22223  7777777776665542      234678899999999999988765 58889999


Q ss_pred             cEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++|++.+|.++.+|. ++ ++++|++|++++|.++.+| .+++|++|
T Consensus       153 ~~L~l~~n~l~~l~~-l~-~l~~L~~L~ls~N~i~~i~-~l~~L~~L  196 (199)
T d2omxa2         153 QQLNFSSNQVTDLKP-LA-NLTTLERLDISSNKVSDIS-VLAKLTNL  196 (199)
T ss_dssp             SEEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCCCG-GGGGCTTC
T ss_pred             cccccccccccCCcc-cc-CCCCCCEEECCCCCCCCCc-cccCCCCC
Confidence            999999999998874 78 9999999999999998887 46777665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.91  E-value=2.7e-09  Score=86.90  Aligned_cols=117  Identities=15%  Similarity=0.077  Sum_probs=93.6

Q ss_pred             CCeEEEEEEcCCCCc--cccccc--CCCcceEEEec-CCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcCCcc
Q 043825          113 KNVKRFCALEQQSDF--AYLDDY--YPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIENLS  186 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~--~~~~~~--~~~LrsL~~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~  186 (235)
                      .++..|.+.......  ..+..+  +++|+.|.+.+ +...+    .+|..+.++++|++|++++|.+.. .|..+..+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g----~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc----ccccccccccccchhhhccccccccccccccchh
Confidence            468888888876653  233445  99999999986 44433    467889999999999999999885 456688899


Q ss_pred             cCcEEecccCC-CcccchHHHhcCccccEEeCcCCCCc-cccHhhcccCC
Q 043825          187 LLRYLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFSDID-HIADEFWKMNK  234 (235)
Q Consensus       187 ~Lr~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~  234 (235)
                      +|++++++.|. ...+|.+++ ++++|+++++++|.+. .+|..++.+.+
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~  174 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSK  174 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred             hhcccccccccccccCchhhc-cCcccceeeccccccccccccccccccc
Confidence            99999999987 457899999 9999999999999654 78988877765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.91  E-value=8.6e-10  Score=89.98  Aligned_cols=99  Identities=14%  Similarity=0.082  Sum_probs=83.0

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeC-Cccc-ccchhcCCcccCcEEecccCCCcccch-HHHhcCc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGY-LVLN-QYLSEIENLSLLRYLKLNIPSLKSLPS-SFFNYLS  210 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~l~-~lp~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~~L~  210 (235)
                      ..++..|.+.++......  .+|..+.++++|++|+|++ |.+. .+|++|++|++|++|++++|++..++. .+. .+.
T Consensus        49 ~~~v~~L~L~~~~l~g~~--~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~-~~~  125 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIK  125 (313)
T ss_dssp             CCCEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCT
T ss_pred             cEEEEEEECCCCCCCCCC--CCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccccc-chh
Confidence            347888999887765421  4678999999999999997 6777 899999999999999999999886654 466 999


Q ss_pred             cccEEeCcCC-CCccccHhhcccCCC
Q 043825          211 NLYTLNMPFS-DIDHIADEFWKMNKL  235 (235)
Q Consensus       211 ~L~~L~l~~~-~l~~lP~~i~~L~~L  235 (235)
                      +|++++++.| ....+|.+++++++|
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             hhcccccccccccccCchhhccCccc
Confidence            9999999999 566889999988764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.6e-09  Score=85.30  Aligned_cols=62  Identities=23%  Similarity=0.137  Sum_probs=32.7

Q ss_pred             HhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC
Q 043825          158 ICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       158 ~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~  220 (235)
                      .+..++.|+.|++++|.++.+| ..+..+.+|++|+|++|+++.+|.++. .+.+|++|+|++|
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~N  205 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSC
T ss_pred             cccccccchhcccccccccccCccccccccccceeecccCCCcccChhHC-CCCCCCEEEecCC
Confidence            3444555555555555555443 234455555555555555555555555 5555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=5.1e-09  Score=80.69  Aligned_cols=112  Identities=18%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ..+++.+.+..+....  .+..  +++|+.|.+.++....      ...+..++.++.++++++.+... ..+..+++|+
T Consensus        89 l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~l~~~~~~~------~~~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~  159 (210)
T d1h6ta2          89 LKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD------INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLD  159 (210)
T ss_dssp             CTTCCEEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCC------CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCS
T ss_pred             Cccccccccccccccc--cccccccccccccccccccccc------ccccccccccccccccccccccc-cccccccccc
Confidence            3445555555444331  1222  5555555555544421      12355666666666666666543 3467788999


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++++++|.+..++. +. ++++|+.|++++|.++.+| .+.+|++|
T Consensus       160 ~l~l~~n~l~~i~~-l~-~l~~L~~L~Ls~N~i~~l~-~l~~l~~L  202 (210)
T d1h6ta2         160 TLSLEDNQISDIVP-LA-GLTKLQNLYLSKNHISDLR-ALAGLKNL  202 (210)
T ss_dssp             EEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCBCG-GGTTCTTC
T ss_pred             cccccccccccccc-cc-CCCCCCEEECCCCCCCCCh-hhcCCCCC
Confidence            99999999998874 78 9999999999999999997 57777765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.85  E-value=2.7e-09  Score=86.59  Aligned_cols=83  Identities=11%  Similarity=-0.023  Sum_probs=41.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHH-------H
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSF-------F  206 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i-------~  206 (235)
                      ++.+++|.+.++....    ..+..+..+++|++|+|++|.++.+|+++..+++|++|++++|+|+.++...       .
T Consensus       194 ~~~l~~L~~s~n~l~~----~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~  269 (305)
T d1xkua_         194 LNNLAKLGLSFNSISA----VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  269 (305)
T ss_dssp             CTTCCEEECCSSCCCE----ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             cccccccccccccccc----cccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhc
Confidence            4444455444443332    2234445555555555555555555555555555555555555555554321       2


Q ss_pred             hcCccccEEeCcCCC
Q 043825          207 NYLSNLYTLNMPFSD  221 (235)
Q Consensus       207 ~~L~~L~~L~l~~~~  221 (235)
                       .+.+|+.|+|++|.
T Consensus       270 -~~~~L~~L~L~~N~  283 (305)
T d1xkua_         270 -KKASYSGVSLFSNP  283 (305)
T ss_dssp             -TSCCCSEEECCSSS
T ss_pred             -ccCCCCEEECCCCc
Confidence             34455555555553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.79  E-value=7.6e-09  Score=83.80  Aligned_cols=109  Identities=16%  Similarity=0.113  Sum_probs=89.8

Q ss_pred             CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLR  189 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr  189 (235)
                      ...++.+.+..+...  ..+.. .++++.|.+.++....    ..+..+..++.+++|++++|.+..+ |..+..+.+|+
T Consensus       149 l~~L~~l~l~~n~l~--~l~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         149 MKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  222 (305)
T ss_dssp             CTTCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             ccccCccccccCCcc--ccCcccCCccCEEECCCCcCCC----CChhHhhccccccccccccccccccccccccccccce
Confidence            345667776666544  22233 8899999998877654    4567789999999999999999866 56788999999


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccH
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD  227 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  227 (235)
                      +|+|++|.++.+|.++. ++++|++|++++|.++.++.
T Consensus       223 ~L~L~~N~L~~lp~~l~-~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         223 ELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             EEECCSSCCSSCCTTTT-TCSSCCEEECCSSCCCCCCT
T ss_pred             eeecccccccccccccc-cccCCCEEECCCCccCccCh
Confidence            99999999999999999 99999999999999988875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=1.7e-08  Score=78.36  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=63.6

Q ss_pred             HHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          157 KICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       157 ~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ..+..++.|+.|++++|.+...+. ++++++|++|++++|.++.+|. +. ++++|++|++++|.++.+|+ +.++++|
T Consensus       145 ~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~-~l~~L~~L~Ls~N~lt~i~~-l~~l~~L  219 (227)
T d1h6ua2         145 SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LA-SLPNLIEVHLKNNQISDVSP-LANTSNL  219 (227)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GG-GCTTCCEEECTTSCCCBCGG-GTTCTTC
T ss_pred             hhhccccccccccccccccccchh-hcccccceecccCCCccCCChh-hc-CCCCCCEEECcCCcCCCCcc-cccCCCC
Confidence            346788899999999998876554 8889999999999999999875 77 89999999999999999984 6666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.3e-09  Score=82.59  Aligned_cols=120  Identities=19%  Similarity=0.049  Sum_probs=97.3

Q ss_pred             CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL  188 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  188 (235)
                      ....+++|.+..+.......... +++|+.|.+.++....    .....+..+..++.|++++|.+..+|.. +..+.+|
T Consensus        75 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS----LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC----CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccce----eeccccccccccccccccccccceeccccccccccc
Confidence            45678899888877653222222 8899999998887764    3456678899999999999999987654 5678999


Q ss_pred             cEEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +++++++|+++.+|.. +. .+++|++|+|++|.++.+|.++..+++|
T Consensus       151 ~~l~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~L~~lp~~~~~~~~L  197 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLL  197 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCC
T ss_pred             hhcccccccccccCccccc-cccccceeecccCCCcccChhHCCCCCC
Confidence            9999999999988865 56 8999999999999999999988877664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=1.9e-08  Score=83.42  Aligned_cols=117  Identities=15%  Similarity=0.182  Sum_probs=82.4

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCc----------------chhHHhhccCccCeEEEeCCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPI----------------DWQKICEMYKLLRALDLGYLV  174 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~----------------~~~~~~~~l~~Lr~L~l~~~~  174 (235)
                      ..++.+.+..+....  .+..  +++|++|.+.++........                .-...+..++.++.|++++|.
T Consensus       241 ~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         241 TNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             TTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             cccchhccccCccCC--CCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCC
Confidence            456666665554432  1112  66666666655443321000                112347888899999999999


Q ss_pred             ccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          175 LNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       175 l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      ++.++. +..+++|++|++++|+++.+| .+. ++++|++|++++|.++.+|+ +.++++|
T Consensus       319 l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~-~l~~L~~L~l~~N~l~~l~~-l~~l~~L  375 (384)
T d2omza2         319 ISDISP-VSSLTKLQRLFFANNKVSDVS-SLA-NLTNINWLSAGHNQISDLTP-LANLTRI  375 (384)
T ss_dssp             CSCCGG-GGGCTTCCEEECCSSCCCCCG-GGG-GCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred             CCCCcc-cccCCCCCEEECCCCCCCCCh-hHc-CCCCCCEEECCCCcCCCChh-hccCCCC
Confidence            987764 888999999999999999887 588 99999999999999988875 6666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=3.1e-08  Score=75.44  Aligned_cols=114  Identities=15%  Similarity=0.116  Sum_probs=82.8

Q ss_pred             CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ..+++++|.+..+.... ..+-. +++|+.|.+..+....     + +.+..++.|+.|+++++.....+ .+..+.+|+
T Consensus        60 ~l~nL~~L~Ls~N~l~~-~~~l~~l~~L~~L~l~~n~~~~-----~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~  131 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIAD-----I-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLN  131 (199)
T ss_dssp             GCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCS
T ss_pred             cCCCcCcCccccccccC-cccccCCccccccccccccccc-----c-ccccccccccccccccccccccc-ccchhhhhH
Confidence            45677888887776552 12222 7888888887776642     2 24678888888888888776543 477888899


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +|++++|.+..+| .+. .+++|+.|++.+|.+..+|. ++.+++|
T Consensus       132 ~L~l~~n~l~~~~-~l~-~~~~L~~L~l~~n~l~~l~~-l~~l~~L  174 (199)
T d2omxa2         132 RLELSSNTISDIS-ALS-GLTSLQQLNFSSNQVTDLKP-LANLTTL  174 (199)
T ss_dssp             EEECCSSCCCCCG-GGT-TCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             Hhhhhhhhhcccc-ccc-ccccccccccccccccCCcc-ccCCCCC
Confidence            9999998888776 577 88999999999998888763 6666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=8.5e-09  Score=75.87  Aligned_cols=84  Identities=18%  Similarity=0.022  Sum_probs=69.8

Q ss_pred             CCCcceEEEecCC-CCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHHHhcCcc
Q 043825          134 YPHLHSLLYFTSE-SDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSN  211 (235)
Q Consensus       134 ~~~LrsL~~~~~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~  211 (235)
                      .++++.|.+.++. ...    ..+..|..+++|+.|++++|.++.+ |..+..+++|++|+|++|+++.+|..+. ...+
T Consensus        30 l~~l~~L~l~~n~~l~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~~~  104 (156)
T d2ifga3          30 AENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLS  104 (156)
T ss_dssp             CSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCC
T ss_pred             ccccCeeecCCCccccc----cCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhh-cccc
Confidence            7788888887654 432    3356788999999999999999977 5568899999999999999999999888 7778


Q ss_pred             ccEEeCcCCCC
Q 043825          212 LYTLNMPFSDI  222 (235)
Q Consensus       212 L~~L~l~~~~l  222 (235)
                      |+.|+|++|.+
T Consensus       105 l~~L~L~~Np~  115 (156)
T d2ifga3         105 LQELVLSGNPL  115 (156)
T ss_dssp             CCEEECCSSCC
T ss_pred             ccccccCCCcc
Confidence            99999998854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.72  E-value=1.7e-10  Score=88.59  Aligned_cols=104  Identities=15%  Similarity=0.122  Sum_probs=72.6

Q ss_pred             CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ..++++|.+..+...  ..+.+  +++|+.|.+.++....     ++..+..++.|+.|++++|.++.++ .+..+.+|+
T Consensus        47 L~~L~~L~Ls~n~I~--~i~~l~~l~~L~~L~Ls~N~i~~-----i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~  118 (198)
T d1m9la_          47 LKACKHLALSTNNIE--KISSLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             TTTCCEEECSEEEES--CCCCHHHHTTCCEEECCEEEECS-----CSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred             ccccceeECcccCCC--CcccccCCccccChhhccccccc-----ccccccccccccccccccccccccc-ccccccccc
Confidence            456777777666555  22334  7788888887776642     3344455667888888888877664 367788888


Q ss_pred             EEecccCCCcccch--HHHhcCccccEEeCcCCCCcc
Q 043825          190 YLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       190 ~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      +|++++|.+..++.  .+. .+++|++|++++|.+..
T Consensus       119 ~L~L~~N~i~~~~~~~~l~-~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEEESEEECCCHHHHHHHT-TTTTCSEEEECSSHHHH
T ss_pred             ccccccchhcccccccccc-CCCccceeecCCCcccc
Confidence            88888888887763  567 78888888888885543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.6e-08  Score=74.34  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             hhHHhhccCccCeEEEeCCc-ccccc-hhcCCcccCcEEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHhhcc
Q 043825          155 WQKICEMYKLLRALDLGYLV-LNQYL-SEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADEFWK  231 (235)
Q Consensus       155 ~~~~~~~l~~Lr~L~l~~~~-l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~i~~  231 (235)
                      .+..+..+++|+.|+++++. ++.++ ..+..+.+|+.|++++|+++.+++. +. .+++|++|+|++|.++.+|.++..
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~  101 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALESLSWKTVQ  101 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccc-ccccccceeccCCCCcccChhhhc
Confidence            45567788999999998765 88775 5689999999999999999999655 56 999999999999999999987654


Q ss_pred             c
Q 043825          232 M  232 (235)
Q Consensus       232 L  232 (235)
                      .
T Consensus       102 ~  102 (156)
T d2ifga3         102 G  102 (156)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.5e-08  Score=79.97  Aligned_cols=117  Identities=13%  Similarity=0.025  Sum_probs=64.5

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCc
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLR  189 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr  189 (235)
                      ++++.+.+..+..........  ..+|+++.+.++....    ..+..|..++.|+.|++++|.++.+| ..+..+++|+
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~----i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccc----cChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            455566555544432122222  5566666666655543    22345566666666666666666543 3455666666


Q ss_pred             EEecccCCCccc-chHHHhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825          190 YLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHIAD-EFWKMNK  234 (235)
Q Consensus       190 ~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~  234 (235)
                      ++.+++|.+..+ |..+. .+++|++|++++|.+..+|. .++.+.+
T Consensus       181 ~l~l~~N~l~~i~~~~f~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             hhhhhhccccccChhHhh-hhhhcccccccccccccccccccccccc
Confidence            666666665544 44555 66666666666665555543 3444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.69  E-value=4.6e-10  Score=86.13  Aligned_cols=94  Identities=20%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      +++|+.|.+.++....     + +.+..+++|+.|++++|.++.+|.....+.+|++|++++|.++.++ .+. ++++|+
T Consensus        47 L~~L~~L~Ls~n~I~~-----i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~-~l~~L~  118 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-----I-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE-KLVNLR  118 (198)
T ss_dssp             TTTCCEEECSEEEESC-----C-CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHH-HHHHSS
T ss_pred             ccccceeECcccCCCC-----c-ccccCCccccChhhcccccccccccccccccccccccccccccccc-ccc-cccccc
Confidence            8999999998887753     3 2478999999999999999988877777778999999999999885 577 899999


Q ss_pred             EEeCcCCCCccccH--hhcccCCC
Q 043825          214 TLNMPFSDIDHIAD--EFWKMNKL  235 (235)
Q Consensus       214 ~L~l~~~~l~~lP~--~i~~L~~L  235 (235)
                      +|++++|.+..++.  .+..+++|
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L  142 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTC
T ss_pred             ccccccchhccccccccccCCCcc
Confidence            99999998888873  56666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.60  E-value=1.4e-07  Score=72.33  Aligned_cols=114  Identities=18%  Similarity=0.122  Sum_probs=83.0

Q ss_pred             CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR  189 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr  189 (235)
                      ...++++|.+..+..... .+.. +++|+.|.+.++...     .++ .+..++.|+.|+++++.+..++ .+..+.+|+
T Consensus        66 ~l~~L~~L~L~~n~i~~l-~~~~~l~~L~~L~l~~n~i~-----~l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~  137 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVK-----DLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE  137 (210)
T ss_dssp             GCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC-----CGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred             hCCCCCEEeCCCccccCc-cccccCcccccccccccccc-----ccc-cccccccccccccccccccccc-ccccccccc
Confidence            456788888877766521 1222 788888888877664     233 4677888888888888876654 477788888


Q ss_pred             EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825          190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL  235 (235)
Q Consensus       190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L  235 (235)
                      +++++++.+..++ .+. ++++|+++++++|.+..+|. +.++++|
T Consensus       138 ~l~~~~n~l~~~~-~~~-~l~~L~~l~l~~n~l~~i~~-l~~l~~L  180 (210)
T d1h6ta2         138 SLYLGNNKITDIT-VLS-RLTKLDTLSLEDNQISDIVP-LAGLTKL  180 (210)
T ss_dssp             EEECCSSCCCCCG-GGG-GCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             ccccccccccccc-ccc-cccccccccccccccccccc-ccCCCCC
Confidence            8888888877654 466 89999999999998888864 6666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=8.3e-08  Score=79.37  Aligned_cols=78  Identities=13%  Similarity=0.149  Sum_probs=67.5

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      +++++.|.+.++....     ++ .+..+++|+.|++++|.++.+| .++.+++|++|++++|+++.+|+ +. ++++|+
T Consensus       306 ~~~l~~L~ls~n~l~~-----l~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~-~l~~L~  376 (384)
T d2omza2         306 LKNLTYLTLYFNNISD-----IS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LA-NLTRIT  376 (384)
T ss_dssp             CTTCSEEECCSSCCSC-----CG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GT-TCTTCS
T ss_pred             hcccCeEECCCCCCCC-----Cc-ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hc-cCCCCC
Confidence            7788888888776653     22 3789999999999999998876 58999999999999999999986 78 999999


Q ss_pred             EEeCcCC
Q 043825          214 TLNMPFS  220 (235)
Q Consensus       214 ~L~l~~~  220 (235)
                      +|+|++|
T Consensus       377 ~L~L~~N  383 (384)
T d2omza2         377 QLGLNDQ  383 (384)
T ss_dssp             EEECCCE
T ss_pred             EeeCCCC
Confidence            9999986

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.55  E-value=8.4e-08  Score=74.32  Aligned_cols=77  Identities=13%  Similarity=0.109  Sum_probs=65.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      .++++.|.+.++....     . ..+.++++|+.|++++|.++.+|. ++.+++|++|++++|+++++|+ +. ++++|+
T Consensus       150 ~~~L~~L~l~~n~~~~-----~-~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~-~l~~L~  220 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSD-----L-TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LA-NTSNLF  220 (227)
T ss_dssp             CTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GT-TCTTCC
T ss_pred             cccccccccccccccc-----c-hhhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cc-cCCCCC
Confidence            7788888887776642     2 347899999999999999988765 8899999999999999999984 78 999999


Q ss_pred             EEeCcC
Q 043825          214 TLNMPF  219 (235)
Q Consensus       214 ~L~l~~  219 (235)
                      +|++++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.3e-07  Score=74.19  Aligned_cols=107  Identities=15%  Similarity=0.074  Sum_probs=87.8

Q ss_pred             CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825          111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL  187 (235)
Q Consensus       111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  187 (235)
                      ....++.+.+..+.........+  .++++.|.+.++....    ..+..|..++.|+.+++++|.+..+ |..+..+.+
T Consensus       127 ~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~----l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS----VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccchhhhccccccccChhHhccccchhhcccccCcccc----cchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence            45677888888887764333334  7889999999888754    4467889999999999999998854 788999999


Q ss_pred             CcEEecccCCCcccch-HHHhcCccccEEeCcCCCC
Q 043825          188 LRYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDI  222 (235)
Q Consensus       188 Lr~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l  222 (235)
                      |++|++++|.+..+|. .++ .+.+|++|++++|.+
T Consensus       203 L~~L~l~~N~i~~~~~~~~~-~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALA-PLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHT-TCTTCCEEECCSSCE
T ss_pred             cccccccccccccccccccc-cccccCEEEecCCCC
Confidence            9999999999998886 456 999999999999844

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.19  E-value=5.7e-07  Score=73.06  Aligned_cols=68  Identities=16%  Similarity=0.174  Sum_probs=55.3

Q ss_pred             hccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825          160 EMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK  234 (235)
Q Consensus       160 ~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  234 (235)
                      ..+++|+.|++++|.++.+|..   +.+|+.|++++|+++.+|.    .+.+|++|++++|.++++|.....+++
T Consensus       281 ~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~----~~~~L~~L~L~~N~L~~lp~~~~~L~~  348 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVED  348 (353)
T ss_dssp             CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             ccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCcccc----ccCCCCEEECcCCcCCCCCccccccCe
Confidence            3457899999999999999865   5689999999999999985    356899999999988888765444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.19  E-value=1.3e-06  Score=70.91  Aligned_cols=82  Identities=22%  Similarity=0.255  Sum_probs=48.8

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY  213 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~  213 (235)
                      .++|++|.+.++....     +|.   .+.+|+.|++++|.++.+++-   ...|++|++++|.+..+|. ++ ++.+|+
T Consensus        57 ~~~L~~L~Ls~N~l~~-----lp~---~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp~-~~-~l~~L~  123 (353)
T d1jl5a_          57 PPHLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPE-LQ-NSSFLK  123 (353)
T ss_dssp             CTTCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCC-CT-TCTTCC
T ss_pred             CCCCCEEECCCCCCcc-----ccc---chhhhhhhhhhhcccchhhhh---ccccccccccccccccccc-hh-hhccce
Confidence            5567777766665542     222   234566667777666654431   1246777777777777764 45 677777


Q ss_pred             EEeCcCCCCccccHh
Q 043825          214 TLNMPFSDIDHIADE  228 (235)
Q Consensus       214 ~L~l~~~~l~~lP~~  228 (235)
                      +|++++|.+...|..
T Consensus       124 ~L~l~~~~~~~~~~~  138 (353)
T d1jl5a_         124 IIDVDNNSLKKLPDL  138 (353)
T ss_dssp             EEECCSSCCSCCCCC
T ss_pred             eeccccccccccccc
Confidence            777776655555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.1e-06  Score=64.78  Aligned_cols=76  Identities=16%  Similarity=0.027  Sum_probs=54.4

Q ss_pred             Hhhcc-CccCeEEEeCCcccccchhcCCcccCcEE-ecccCCCcccchHHHhcCccccEEeCcCCCCccccHh-hcccC
Q 043825          158 ICEMY-KLLRALDLGYLVLNQYLSEIENLSLLRYL-KLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADE-FWKMN  233 (235)
Q Consensus       158 ~~~~l-~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L-~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~  233 (235)
                      .+..+ ..+..|+++++.++.++.......++..+ .+.+|.++++|....+++++|++|++++|.++.+|.. +.+++
T Consensus       147 ~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             ccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            33443 36777888888888887777666666555 4566778999876532789999999999988888753 34443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.6e-06  Score=63.60  Aligned_cols=67  Identities=22%  Similarity=0.092  Sum_probs=48.0

Q ss_pred             hHHhhccCccCeEEEeCCccccc---chhcCCcccCcEEecccCCCcccch-HHHhcCccccEEeCcCCCCc
Q 043825          156 QKICEMYKLLRALDLGYLVLNQY---LSEIENLSLLRYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDID  223 (235)
Q Consensus       156 ~~~~~~l~~Lr~L~l~~~~l~~l---p~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~  223 (235)
                      ...+..++.|++|+|++|.++.+   +..+..+++|++|++++|.++.+++ ... +..+|+.|++++|.+.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l-~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH-TTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh-hccccceeecCCCCcC
Confidence            34456788888888888887744   4456678888888888888887775 223 4456888888888554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.3e-05  Score=61.78  Aligned_cols=86  Identities=13%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeC-Cccc-ccchhcCCcccC
Q 043825          113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGY-LVLN-QYLSEIENLSLL  188 (235)
Q Consensus       113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~l~-~lp~~i~~L~~L  188 (235)
                      .+++.|.+..+.........+  +++|+.|.+.++.....   ..+..|..++.++.+.+.. +.+. ..+..+..+.+|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~---i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV---IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCE---ECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTC
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccce---eeccccccccccccccccccccccccccccccccccc
Confidence            344555554444432111222  44555555544433210   1122334444444444433 2233 222334445555


Q ss_pred             cEEecccCCCccc
Q 043825          189 RYLKLNIPSLKSL  201 (235)
Q Consensus       189 r~L~l~~~~l~~l  201 (235)
                      ++++++++.+...
T Consensus       106 ~~l~l~~~~l~~~  118 (242)
T d1xwdc1         106 QYLLISNTGIKHL  118 (242)
T ss_dssp             CEEEEESCCCCSC
T ss_pred             cccccchhhhccc
Confidence            5555555544433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.4e-06  Score=69.82  Aligned_cols=110  Identities=14%  Similarity=0.069  Sum_probs=79.0

Q ss_pred             CeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCC-
Q 043825          114 NVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIEN-  184 (235)
Q Consensus       114 ~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~-  184 (235)
                      +++.|.+.++......+...   ++++++|.+.++.........+...+..+++|+.|+|++|.+.     .+...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            46677787777764333332   8999999999987642111134456789999999999999875     23333332 


Q ss_pred             cccCcEEecccCCCcc-----cchHHHhcCccccEEeCcCCCCcc
Q 043825          185 LSLLRYLKLNIPSLKS-----LPSSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       185 L~~Lr~L~l~~~~l~~-----lP~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      ..+|++|++++|.++.     ++..+. .+++|+.|++++|.+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~-~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhh-ccccccccccccccchh
Confidence            3479999999998863     556677 88999999999997654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.7e-05  Score=63.12  Aligned_cols=85  Identities=20%  Similarity=0.106  Sum_probs=57.4

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-cc-ccchhcCCcccCcEEecccCC-Cc-ccchHHHhcC
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LN-QYLSEIENLSLLRYLKLNIPS-LK-SLPSSFFNYL  209 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~-~lp~~i~~L~~Lr~L~l~~~~-l~-~lP~~i~~~L  209 (235)
                      .++++.|.+.++... .....+...+.++++|+.|++++|. ++ ..+..+.++++|++|++++|. +. .-...++ ++
T Consensus       147 ~~~L~~L~l~~~~~~-i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~  224 (284)
T d2astb2         147 SETITQLNLSGYRKN-LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EI  224 (284)
T ss_dssp             CTTCCEEECCSCGGG-SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GC
T ss_pred             ccccchhhhcccccc-cccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh-cC
Confidence            466777777654221 0101344556778888888888865 55 556778888889999998863 54 3345567 88


Q ss_pred             ccccEEeCcCC
Q 043825          210 SNLYTLNMPFS  220 (235)
Q Consensus       210 ~~L~~L~l~~~  220 (235)
                      ++|++|++++|
T Consensus       225 ~~L~~L~l~~~  235 (284)
T d2astb2         225 PTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeeeCC
Confidence            88888988887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=7.8e-06  Score=65.19  Aligned_cols=99  Identities=20%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhc-cCccCeEEEeCCc--cc--ccchhcCCcccCcEEecccCC-Cc-ccchHHH
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEM-YKLLRALDLGYLV--LN--QYLSEIENLSLLRYLKLNIPS-LK-SLPSSFF  206 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~-l~~Lr~L~l~~~~--l~--~lp~~i~~L~~Lr~L~l~~~~-l~-~lP~~i~  206 (235)
                      +++|+.|.+.++.....  ......+.. .+.|+.|+++++.  +.  .+......+++|++|++++|. ++ ..+..+.
T Consensus       120 ~~~L~~L~ls~c~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~  197 (284)
T d2astb2         120 CSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  197 (284)
T ss_dssp             CTTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             HHhcccccccccccccc--ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc
Confidence            56677776665433210  012222322 3567777777643  32  233334567788999998864 55 4566778


Q ss_pred             hcCccccEEeCcCC-CCc-cccHhhcccCCC
Q 043825          207 NYLSNLYTLNMPFS-DID-HIADEFWKMNKL  235 (235)
Q Consensus       207 ~~L~~L~~L~l~~~-~l~-~lP~~i~~L~~L  235 (235)
                       ++++|++|++++| .+. .-+..++++++|
T Consensus       198 -~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         198 -QLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             -GCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             -ccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence             8889999999987 554 233445555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=9.7e-06  Score=59.23  Aligned_cols=80  Identities=24%  Similarity=0.112  Sum_probs=62.7

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccch-------H-
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPS-------S-  204 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~-------~-  204 (235)
                      +++|++|.+.++.....+  .+...+..+++|+.|++++|.++.+++ ......+|+.|++++|.+.....       . 
T Consensus        64 ~~~L~~L~Ls~N~i~~l~--~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCS--GGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             CCCCCEeeCCCccccCCc--hhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            889999999999887644  456778899999999999999997765 22234479999999998864432       2 


Q ss_pred             HHhcCccccEEe
Q 043825          205 FFNYLSNLYTLN  216 (235)
Q Consensus       205 i~~~L~~L~~L~  216 (235)
                      +. .+++|+.||
T Consensus       142 ~~-~~P~L~~LD  152 (162)
T d1koha1         142 RE-RFPKLLRLD  152 (162)
T ss_dssp             HT-TSTTCCEET
T ss_pred             HH-HCCCCCEEC
Confidence            34 789999996

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.7e-05  Score=66.15  Aligned_cols=97  Identities=12%  Similarity=0.131  Sum_probs=69.9

Q ss_pred             CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCcc-----cchH
Q 043825          135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLKS-----LPSS  204 (235)
Q Consensus       135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~~-----lP~~  204 (235)
                      .+|++|.+..+.....   .+...+..++++++|+|++|.++     .++..+...++|++|+|++|.+..     +...
T Consensus         2 ~~l~~ld~~~~~i~~~---~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCCHH---HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCCEEEeeCCcCChH---HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            3678899988777531   34667889999999999999876     456677889999999999998863     2222


Q ss_pred             HHhcCccccEEeCcCCCCcc-----ccHhhcccCC
Q 043825          205 FFNYLSNLYTLNMPFSDIDH-----IADEFWKMNK  234 (235)
Q Consensus       205 i~~~L~~L~~L~l~~~~l~~-----lP~~i~~L~~  234 (235)
                      +.....+|++|++++|.++.     ++..+..+++
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~  113 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT  113 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTT
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhcccc
Confidence            22012479999999997754     4555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.20  E-value=3.7e-05  Score=62.53  Aligned_cols=92  Identities=16%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-----cchhcCC--cccCcEEecccCCCc-----cc
Q 043825          134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-----YLSEIEN--LSLLRYLKLNIPSLK-----SL  201 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i~~--L~~Lr~L~l~~~~l~-----~l  201 (235)
                      .++|+.|.+.++.........+...+..++.|+.|++++|.+..     +-..+..  -..|+.|++++|.+.     .+
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            56677777665543210000233455667777777777776641     2223322  245777777777664     24


Q ss_pred             chHHHhcCccccEEeCcCCCCccc
Q 043825          202 PSSFFNYLSNLYTLNMPFSDIDHI  225 (235)
Q Consensus       202 P~~i~~~L~~L~~L~l~~~~l~~l  225 (235)
                      ...+..++++|++|++++|.+.+-
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHccCCCCCEEECCCCcCCCc
Confidence            444421466777777777755443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.97  E-value=0.00033  Score=56.62  Aligned_cols=89  Identities=19%  Similarity=0.132  Sum_probs=55.7

Q ss_pred             CCCcceEEEecCCCCCCCCc-chhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCcc-----cc
Q 043825          134 YPHLHSLLYFTSESDHLDPI-DWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLKS-----LP  202 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~~-----lP  202 (235)
                      .+.++.|.+..+........ .+...+..+++|+.|++++|.+.     .+...+...++|++|++++|.+..     +-
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            66777777766654310000 12334567778888888888764     355566777888888888887653     22


Q ss_pred             hHHHhc--CccccEEeCcCCCCc
Q 043825          203 SSFFNY--LSNLYTLNMPFSDID  223 (235)
Q Consensus       203 ~~i~~~--L~~L~~L~l~~~~l~  223 (235)
                      ..+. .  ...|++|++++|.+.
T Consensus       265 ~~l~-~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         265 DAFS-KLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHH-TCSSCCCCEEECCSSCCB
T ss_pred             HHhh-hccCCCCCEEECCCCcCC
Confidence            3333 3  246888888888654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.59  E-value=0.00053  Score=49.79  Aligned_cols=109  Identities=10%  Similarity=0.083  Sum_probs=72.3

Q ss_pred             CCCCeEEEEEEcC-CCCcc----ccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----cc
Q 043825          111 SRKNVKRFCALEQ-QSDFA----YLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QY  178 (235)
Q Consensus       111 ~~~~~r~lsl~~~-~~~~~----~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~l  178 (235)
                      ..+.++.|.+... .....    ....+  .+.+++|.+.++.........+...+...+.|+.|++++|.+.     .+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456888888653 23321    11122  6789999888776642111145566778889999999999876     34


Q ss_pred             chhcCCcccCcEEecccCCCcc--------cchHHHhcCccccEEeCcCC
Q 043825          179 LSEIENLSLLRYLKLNIPSLKS--------LPSSFFNYLSNLYTLNMPFS  220 (235)
Q Consensus       179 p~~i~~L~~Lr~L~l~~~~l~~--------lP~~i~~~L~~L~~L~l~~~  220 (235)
                      -..+..-..|++|+++++.+..        +...+. .-+.|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~-~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHH-hCCCccEeeCcCC
Confidence            4566777789999998876543        344455 5678899988776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.33  E-value=0.0016  Score=47.05  Aligned_cols=90  Identities=12%  Similarity=0.040  Sum_probs=59.2

Q ss_pred             CCCcceEEEecCCCCCCC-CcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCcc-----cc
Q 043825          134 YPHLHSLLYFTSESDHLD-PIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLKS-----LP  202 (235)
Q Consensus       134 ~~~LrsL~~~~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~~-----lP  202 (235)
                      .+.|+.|.+.+....... ...+-..+...+.|+.|++++|.+.     .+.+.+...+.|+.|++++|.+..     +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            578888888754321100 0023345667788999999998875     344455666789999999988762     33


Q ss_pred             hHHHhcCccccEEeCcCCCCcc
Q 043825          203 SSFFNYLSNLYTLNMPFSDIDH  224 (235)
Q Consensus       203 ~~i~~~L~~L~~L~l~~~~l~~  224 (235)
                      ..+. .-+.|+.|++++|.+..
T Consensus        94 ~aL~-~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          94 RSTL-VTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHTT-TTCCCSEEECCCCSSCC
T ss_pred             HHHH-hCCcCCEEECCCCcCCC
Confidence            3445 56779999998775443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.92  E-value=0.0072  Score=43.24  Aligned_cols=110  Identities=7%  Similarity=0.127  Sum_probs=70.9

Q ss_pred             CCCCeEEEEEEc-CCCCccc----cccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----cc
Q 043825          111 SRKNVKRFCALE-QQSDFAY----LDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QY  178 (235)
Q Consensus       111 ~~~~~r~lsl~~-~~~~~~~----~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~l  178 (235)
                      ..+.+++|.+.. +......    ...+  .++++.|.+.++.........+...+...+.++.++++++.+.     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345677787765 2233111    1122  7888999888876643111134456777888999999988864     45


Q ss_pred             chhcCCcccCcEEecc--cCCCc-----ccchHHHhcCccccEEeCcCCC
Q 043825          179 LSEIENLSLLRYLKLN--IPSLK-----SLPSSFFNYLSNLYTLNMPFSD  221 (235)
Q Consensus       179 p~~i~~L~~Lr~L~l~--~~~l~-----~lP~~i~~~L~~L~~L~l~~~~  221 (235)
                      -+.+...+.|+.+.|.  ++.+.     .+...+. +.++|+.|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~-~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHH-hCCCcCEEeCcCCC
Confidence            5666777788866554  44554     4666677 78899999988763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.93  E-value=0.037  Score=39.28  Aligned_cols=88  Identities=9%  Similarity=0.015  Sum_probs=59.7

Q ss_pred             CCCcceEEEecCC-CCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCc-----ccc
Q 043825          134 YPHLHSLLYFTSE-SDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLK-----SLP  202 (235)
Q Consensus       134 ~~~LrsL~~~~~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~-----~lP  202 (235)
                      .+.|+.|.+.+.. .....-..+...+...++|+.|++++|.+.     .+-..+.....++.++++++.+.     .+-
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            5788888887643 221100023445668899999999999875     34455667788999999998764     444


Q ss_pred             hHHHhcCccccEEeCc--CCCC
Q 043825          203 SSFFNYLSNLYTLNMP--FSDI  222 (235)
Q Consensus       203 ~~i~~~L~~L~~L~l~--~~~l  222 (235)
                      ..+. ..++|+.++|.  +|.+
T Consensus        96 ~~l~-~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          96 EALQ-SNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HGGG-GCSSCCEEECCCCSSCC
T ss_pred             HHHH-hCccccEEeeccCCCcC
Confidence            5566 77888876665  4444