Citrus Sinensis ID: 043837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFGFNF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
MKHYSEALDDLNtaieadptlseayfHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAlklydsgeytkpleyIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHfqkglrldpehSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAAlaldpnhtahnVHLYLGLCKVLVKlgrgkdalSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALqwhpdknvdnrEEAENKFREIAAAYEVlgdddkrarydrgedieetgmggggfnfggggqqftfhfeggfpggfggdggfpggfgfnf
Flexible Loop (DISEMBL)
MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAIsetgyllkeDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKtksaednvskgKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKsaaqqspqdmNIREALMRAEKALkmskrkdwykilgvsktasisEIKRAYKKLalqwhpdknvdnrEEAENKFREIAAAyevlgdddkraRYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFGFNF
Low Complexity Region (SEG)
MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSkakllkvklllaakDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETgmggggfnfggggqqftfhfeggfpggfggdggfpggfgfnf
Disordered region (IsUnstruct)
*******************TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK***********GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGA********************************RKDWYKILGVSKTASISEIKRAYKKLALQWHP*************FREIAAAYEVLG******************MGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGF****
Disordered Region (DISOPRED)
*KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR***************LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK*****VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA**************MRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYD*********************************************FGFNF
Disordered Region (DISEMBL)
MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFGFNF
Disordered Region (DISPRO)
MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEET*****GFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFGFNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFGFNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q54IP0	539	DnaJ homolog subfamily C	yes	no	0.877	0.666	0.340	2e-47
Q54M21	502	DnaJ homolog subfamily C	no	no	0.863	0.703	0.318	7e-47
Q9HGM9	476	DnaJ homolog subfamily C	yes	no	0.911	0.783	0.331	5e-46
Q5ZI13	503	DnaJ homolog subfamily C	yes	no	0.885	0.719	0.310	6e-45
Q27968	504	DnaJ homolog subfamily C	yes	no	0.921	0.748	0.301	1e-43
Q13217	504	DnaJ homolog subfamily C	yes	no	0.921	0.748	0.303	1e-43
Q9R0T3	504	DnaJ homolog subfamily C	yes	no	0.921	0.748	0.320	3e-43
Q91YW3	504	DnaJ homolog subfamily C	yes	no	0.828	0.672	0.321	1e-42
Q99615	494	DnaJ homolog subfamily C	no	no	0.955	0.791	0.322	7e-41
Q9QYI3	494	DnaJ homolog subfamily C	no	no	0.963	0.797	0.317	4e-40

>sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 197/376 (52%), Gaps = 17/376 (4%)

Query: 22  SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDS----GEYTKPLEY 77
           S+AY H      Q   +  R  V +   ++LLQ ++  DS  +   S       + P   
Sbjct: 82  SKAYIHLAQY-DQAASIIVRGLVFDPRNNELLQEKNQIDSIQRTISSLTKEKALSNPSSS 140

Query: 78  IDKV--VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY 135
           ++++  VL  S   ++ ++LK ++L+  K Y  A +    LL+ED  N E L  RG + Y
Sbjct: 141 LNQIENVLSQSKYNTQLQVLKARVLIELKQYPQASNLMTTLLQEDSRNPEYLYVRGLSLY 200

Query: 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKA 195
           Y  +  +A +HFQ  L  DP++SE + A   L+++  K K   +       + A + F  
Sbjct: 201 YQNNFPLALQHFQNSLTYDPDYSESRVALKRLRSIESKKKEGNEYFQSKNYQAAYDSFTE 260

Query: 196 ALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT 255
           AL++DP     N  LY      LV L R  +A++ CT A+ I+    +A ++R + ++  
Sbjct: 261 ALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQ 320

Query: 256 EDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRA 315
           E++E AV D + A    P++  ++  +  A+ A K S RKD+YKILGVSK A  +EIK+A
Sbjct: 321 ENYEDAVRDYEKAQSLDPENGELQRNIKEAKIAHKKSLRKDYYKILGVSKEAGETEIKKA 380

Query: 316 YKKLALQWHPDKNVDNREE----AENKFREIAAAYEVLGDDDKRARYDRGEDIEETGM-- 369
           Y+KLALQ+HPDKN    EE    AE  F++I  AY VL D+ K+ +YD G+D  E GM  
Sbjct: 381 YRKLALQYHPDKNNQLPEEEKAQAEKMFKDIGEAYSVLSDEKKKRQYDMGQD--ENGMPF 438

Query: 370 --GGGGFNFGGGGQQF 383
               GG +      QF
Sbjct: 439 DADMGGVDINSVFSQF 454

Dictyostelium discoideum (taxid: 44689)

>sp|Q54M21|DNJC3_DICDI DnaJ homolog subfamily C member 3 homolog OS=Dictyostelium discoideum GN=dnajc3 PE=3 SV=1

 Score =  188 bits (477), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 217/377 (57%), Gaps = 24/377 (6%)

Query: 7   ALDDLNTAIEADPTLSEAYFHRGSV-------------LRQLCRVKARNSVAEKELSQLL 53
           AL DLN AIEA+P    A   R  +              +++ +++  NS A++++ +L 
Sbjct: 88  ALSDLNRAIEANPDNIHARLKRAKIQSSLGRFEEAMDEYKRVLKIRPDNSQAKQQIEKLK 147

Query: 54  QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA-----AKDYAS 108
           + +   +   K+ D  +  K   Y D + ++       + L +V+L+L        D+  
Sbjct: 148 KVEQQLE---KVRDMVKVEK--NYKDSIAILLDIQSVVSDLKEVRLMLCECFFQQGDHRK 202

Query: 109 AISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK 168
            + ET  +LK + +++ AL  RG+ ++ + + ++A +  ++GL+ DP+++  +     + 
Sbjct: 203 VLDETMTILKSEPSSVAALYWRGKTFFSMGEKEIAMKFLKEGLKFDPDNTNCRAMIKTIN 262

Query: 169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDAL 228
              K T +A++  ++ K + A+   + AL ++PN   H+  LYL  CK L+K+ +GK+++
Sbjct: 263 KFEKSTANAQELFNQQKYQDALGQIEDALEIEPNSPTHSTPLYLLKCKCLLKVKKGKESI 322

Query: 229 SSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288
            +C  AL ++E   +AL  R EA +  ED++ A+ D   A +  P D  I + + RA+KA
Sbjct: 323 EACNRALELDELNADALYNRAEAYMYEEDYQKALNDYNKAREHKPNDPQIHDGIRRAQKA 382

Query: 289 LKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD-NREEAENKFREIAAAYE 347
            +M+KRKD+YKILG+ K+A+  EIK+A+KKLA++ HPDK+ + ++E+A+  + +I  AYE
Sbjct: 383 QQMAKRKDYYKILGIQKSATPEEIKKAFKKLAIKNHPDKSTETDKEKAQQIYMDINEAYE 442

Query: 348 VLGDDDKRARYDRGEDI 364
            L D++KR RYD GEDI
Sbjct: 443 ALKDEEKRKRYDMGEDI 459

May be involved in the unfolded protein response (UPR) during ER stress.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1

 Score =  185 bits (470), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 199/392 (50%), Gaps = 19/392 (4%)

Query: 2   KHYSEALDDLNTAIE--ADPTLSEAYFHRGSVLRQ-------LC------RVKARNSVAE 46
           K Y+EA+     AI+  +D  L+  Y +R +   Q       LC      R+K      +
Sbjct: 37  KKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRIKPDVPKTQ 96

Query: 47  KELSQLLQAQSTFDSA---LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA 103
             + Q  +  S  + A   LK   +G     L+ + + +   +        LK ++ +  
Sbjct: 97  SRIRQAYEGLSILNEAEVYLKNKQAGLALNALDRLQRRIDSTTQPPMSWMYLKAQVYIFQ 156

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
            D   A      +L+ +  N+EAL+ RG+  YY  ++  A  HFQ+ L+LDP+ +  K  
Sbjct: 157 NDMDRAQKIAHDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTL 216

Query: 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223
           +  ++ L        D   +G  + A E +  AL +DP++      LY+    VL++L R
Sbjct: 217 FKQVRKLENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKR 276

Query: 224 GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM 283
            ++ALS    AL I+   ++ L  R +A    E WE AV D++SA +    D N+R+ L 
Sbjct: 277 PEEALSDSDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDANLRQELR 336

Query: 284 RAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIA 343
           R +  LK SKRKD YKILGVSK A+  EIK+AY+KLAL +HPDKN  N  EAE +F+E+ 
Sbjct: 337 RLQLELKKSKRKDHYKILGVSKEATDIEIKKAYRKLALVYHPDKNAGNL-EAEARFKEVG 395

Query: 344 AAYEVLGDDDKRARYDRGEDIEETGMGGGGFN 375
            AY +L D + R R+D G D+E    GG G +
Sbjct: 396 EAYTILSDPESRRRFDSGVDLEPGMEGGAGMD 427

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5ZI13|DNJC3_CHICK DnaJ homolog subfamily C member 3 OS=Gallus gallus GN=DNAJC3 PE=2 SV=1

 Score =  182 bits (461), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/403 (31%), Positives = 210/403 (52%), Gaps = 41/403 (10%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
           + EA DD    ++++P+ +E                     A+ +L++  + Q  +  AL
Sbjct: 120 FDEAEDDFKNVLKSNPSNNE------------------EKEAQTQLTKSDELQRLYSQAL 161

Query: 64  KLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKED 120
             Y   +Y   +  +D+++ V    C   ++ + L+ +  +   + + AIS+     K  
Sbjct: 162 SAYRQEDYEAAIPLLDEILAV----CVWDAELRELRAECYIKEGEPSKAISDLKAAAKLK 217

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
            +N EA     R YY L DH+++    ++ L+LD +H +    Y  +K L K+ +SAE+ 
Sbjct: 218 SDNTEAFYKISRIYYQLGDHELSLSEVRECLKLDQDHKQCFSLYKQVKKLNKQIESAEEF 277

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
           + +G+   A+  + + +  +P+   +       +C  L K  +  +A++ CT+ L +   
Sbjct: 278 IREGRYEDAISKYDSVMKTEPDVPVYATRAKERICHCLSKNQQATEAITVCTQVLQLEPT 337

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKI 300
            + AL  R EA LL + +E A++D ++A   S  D  IRE L RA++ LK S+++D+YKI
Sbjct: 338 NVNALKDRAEAYLLEDLYEEAIKDYETAQANSENDQQIREGLERAQRMLKQSQKRDYYKI 397

Query: 301 LGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREIAAAYEVLGDDDKRARY 358
           LGV + A   EI +AY+KLA QWHPD  ++ + +++AE KF +IAAA EVL D + R ++
Sbjct: 398 LGVKRNARKQEIIKAYRKLASQWHPDNFQSEEEKKKAEKKFIDIAAAKEVLTDPEMRRKF 457

Query: 359 DRGEDI--EETGMGGG-----------GFN-FGGGGQQFTFHF 387
           D GED    E+  GGG           GFN FG GG  FTF F
Sbjct: 458 DAGEDPLDAESQQGGGNPFHRNWNTWQGFNPFGSGGGPFTFKF 500

May be involved in the unfolded protein response (UPR) during ER stress.

Gallus gallus (taxid: 9031)

>sp|Q27968|DNJC3_BOVIN DnaJ homolog subfamily C member 3 OS=Bos taurus GN=DNAJC3 PE=1 SV=1

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/418 (30%), Positives = 214/418 (51%), Gaps = 41/418 (9%)

Query: 7   ALDDLNTAIEADPTLSEAYFHRGSVL-------------RQLCRVKARNSVAEKELSQLL 53
           AL DL   IE     + A   RG +L             +++ +     +  ++  SQL+
Sbjct: 90  ALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLV 149

Query: 54  QA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYA 107
           ++   Q     AL  ++S ++T  + ++DK++ V    C   ++ + L+ +  +   +  
Sbjct: 150 KSDEMQRLRSQALDAFESSDFTAAITFLDKILEV----CVWDAELRELRAECFIKEGEPR 205

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
            AIS+     K   +N EA       YY L DH+++    ++ L+LD +H      Y  +
Sbjct: 206 KAISDLKASSKLKNDNTEAFYKISTLYYELGDHELSLSEVRECLKLDQDHKRCFAHYKQV 265

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           K L K  +SAE+ + +G+   A+  +++ +  +P    + +     +C    K  +  +A
Sbjct: 266 KKLNKLIESAEELIKEGRYTDAISKYESVMKTEPGVHEYTIRSKERICHCFSKDEKPVEA 325

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           +  C+E L +  + + AL  R EA L+ E ++ A++D ++A + +  D  IRE L +A++
Sbjct: 326 IRVCSEVLQVEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 385

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREIAAA 345
            LK S+R+D+YKILGV + A   EI +AY+KLALQWHPD  +N + +++AE KF +IAAA
Sbjct: 386 LLKQSQRRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 445

Query: 346 YEVLGDDDKRARYDRGEDI--EETGMGGGGFNF--------------GGGGQQFTFHF 387
            EVL D + R ++D GED    E+  GGGG  F               GG  +F FHF
Sbjct: 446 KEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFSPFSSGGPFRFKFHF 503

Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.

Bos taurus (taxid: 9913)

>sp|Q13217|DNJC3_HUMAN DnaJ homolog subfamily C member 3 OS=Homo sapiens GN=DNAJC3 PE=1 SV=1

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/418 (30%), Positives = 213/418 (50%), Gaps = 41/418 (9%)

Query: 7   ALDDLNTAIEADPTLSEAYFHRGSVL-------------RQLCRVKARNSVAEKELSQLL 53
           AL DL   I+     + A   RG +L             +++ +     +  ++  SQL+
Sbjct: 90  ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 149

Query: 54  QA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYA 107
           ++   Q     AL  + SG+YT  + ++DK++ V    C   ++ + L+ +  +   +  
Sbjct: 150 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPR 205

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
            AIS+     K   +N EA       YY L DH+++    ++ L+LD +H      Y  +
Sbjct: 206 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 265

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           K L K  +SAE+ +  G+   A   +++ +  +P+   + V     +C    K  +  +A
Sbjct: 266 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 325

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           +  C+E L +  + + AL  R EA L+ E ++ A++D ++A + +  D  IRE L +A++
Sbjct: 326 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 385

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREIAAA 345
            LK S+++D+YKILGV + A   EI +AY+KLALQWHPD  +N + +++AE KF +IAAA
Sbjct: 386 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 445

Query: 346 YEVLGDDDKRARYDRGEDI--EETGMGGGGFNF--------------GGGGQQFTFHF 387
            EVL D + R ++D GED    E+  GGGG  F               GG  +F FHF
Sbjct: 446 KEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHF 503

Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.

Homo sapiens (taxid: 9606)

>sp|Q9R0T3|DNJC3_RAT DnaJ homolog subfamily C member 3 OS=Rattus norvegicus GN=Dnajc3 PE=2 SV=3

 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 217/418 (51%), Gaps = 41/418 (9%)

Query: 7   ALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKA---------RNSVAEKE----LSQLL 53
           AL DL   IE     + A   RG +L +  R+           +++ +E E     SQL+
Sbjct: 90  ALPDLTRVIELKMDFTAARLQRGHLLLKQGRLAEAEDDFKKVLKSNPSENEEKEAQSQLV 149

Query: 54  QA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYA 107
           +A   Q     AL  +DS +YT  + ++D+++ V    C   ++ + L+ +  +   +  
Sbjct: 150 KADEMQRLRAQALDAFDSADYTAAITFLDEILEV----CVWDAELRELRAECFIKEGEPR 205

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
            AIS+     K   +N EA       YY L DH+++    ++ L+LD +H      Y  +
Sbjct: 206 KAISDLKAASKLKNDNTEAFYKISILYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 265

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           K L K   SAE+ +  G+   A   +++ +  +P+   + V     +C    K  +  +A
Sbjct: 266 KKLNKLIGSAEELIRDGRYTDATSKYESVMKAEPSVAEYTVRSKERICHCFSKDEKPVEA 325

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           +  C+E L +  + + AL  R EA L+ E ++ A++D ++A +Q+  D  IRE L +A++
Sbjct: 326 IKICSEVLQLEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEQNENDQQIREGLEKAQR 385

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREIAAA 345
            LK S+++D+YKILGV + A   EI +AY+KLALQWHPD  ++ + +++AE KF +IAAA
Sbjct: 386 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQSEEEKKKAEKKFIDIAAA 445

Query: 346 YEVLGDDDKRARYDRGEDI--EETGMGGG------------GFN-FGGGGQ-QFTFHF 387
            EVL D + R ++D GED    ET  GGG            GFN F  GG  +F FHF
Sbjct: 446 KEVLSDPEMRRKFDDGEDPLDAETQQGGGSNPFHRSWDSWQGFNPFSSGGPFRFKFHF 503

Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.

Rattus norvegicus (taxid: 10116)

>sp|Q91YW3|DNJC3_MOUSE DnaJ homolog subfamily C member 3 OS=Mus musculus GN=Dnajc3 PE=1 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 193/364 (53%), Gaps = 25/364 (6%)

Query: 45  AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLL 101
           AE +L +  + Q     AL  +D  +YT  + ++DK++ V    C   ++ + L+ +  +
Sbjct: 144 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECFI 199

Query: 102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161
              +   AIS+     K   +N EA       YY L DH+++    ++ L+LD +H    
Sbjct: 200 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 259

Query: 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL 221
             Y  +K L K  +SAE+ +  G+   A   +++ +  +P+   + V     +C    K 
Sbjct: 260 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 319

Query: 222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281
            +  +A+  C+E L +  + + AL  R EA L+ E ++ A++D ++A + +  D  IRE 
Sbjct: 320 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 379

Query: 282 LMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKF 339
           L +A++ LK S+++D+YKILGV + A   EI +AY+KLALQWHPD  +N + +++AE KF
Sbjct: 380 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 439

Query: 340 REIAAAYEVLGDDDKRARYDRGEDI--EETGMGGGGFNF--------------GGGGQQF 383
            +IAAA EVL D + R ++D GED    E+  GGGG  F               GG  +F
Sbjct: 440 IDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRF 499

Query: 384 TFHF 387
            FHF
Sbjct: 500 KFHF 503

Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.

Mus musculus (taxid: 10090)

>sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2

 Score =  168 bits (426), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 213/431 (49%), Gaps = 40/431 (9%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAE-KELSQLL-------QA 55
           + EAL D   ++  D +     F RG +    C +   N++A  +   + L       QA
Sbjct: 78  FREALGDAQQSVRLDDS-----FVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQA 132

Query: 56  QSTFDSALKL----------YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD 105
           Q  F +A  +          ++  ++ K +  +D+  L F+PAC + K+LK + L     
Sbjct: 133 QQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRA-LEFAPACHRFKILKAECLAMLGR 191

Query: 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165
           Y  A S    +L+ D  N +AL  RG   YY    + A + F + LR+ P+H   +KA  
Sbjct: 192 YPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH---EKACI 248

Query: 166 ALKN---LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG 222
           A +N   L  K +       +G  ++A E +  AL +DPN+   N  LY     V  KL 
Sbjct: 249 ACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLR 308

Query: 223 RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL 282
           +  DA+  CT A+ +++  I+A ++R +  + TE +E AV D +    Q+ +    ++ L
Sbjct: 309 KLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEK-VYQTEKTKEHKQLL 367

Query: 283 MRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAE----NK 338
             A+  LK SKRKD+YKILGV K AS  EIK+AY+K AL  HPD++     E +     K
Sbjct: 368 KNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKK 427

Query: 339 FREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGD 398
           F+E+  A+ +L D  K+ RYD G+D++E GM  G F+         F    G PGGF  +
Sbjct: 428 FKEVGEAFTILSDPKKKTRYDSGQDLDEEGMNMGDFDPNN-----IFKAFFGGPGGFSFE 482

Query: 399 GGFPGGFGFNF 409
              PG F F F
Sbjct: 483 ASGPGNFFFQF 493

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm.

Homo sapiens (taxid: 9606)

>sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 210/428 (49%), Gaps = 34/428 (7%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAE-KELSQLL-------QA 55
           + EAL D   ++  D +     F RG +    C +   N++A  +   + L       QA
Sbjct: 78  FREALGDAQQSVRLDDS-----FVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQA 132

Query: 56  QSTFDSALKL----------YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD 105
           Q  F +A  +          ++  ++ K +  +D+  L F+PAC + K+LK + L     
Sbjct: 133 QQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRA-LEFAPACHRFKILKAECLAMLGR 191

Query: 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165
           Y  A      +L+ D  N +AL  RG   YY    + A + F + LR+ P+H +   A  
Sbjct: 192 YPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVACR 251

Query: 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225
             K L  K +       +G  ++A E +  AL +DPN+   N  LY     V  KL + +
Sbjct: 252 NAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLE 311

Query: 226 DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285
           DA+  CT A+ +++  I+A ++R +  + TE +E AV D +    Q+ +    ++ L  A
Sbjct: 312 DAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEK-VYQTEKTKEHKQLLKNA 370

Query: 286 EKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAE----NKFRE 341
           +  LK SKRKD+YKILGV K AS  EIK+AY+K AL  HPD++     E +     KF+E
Sbjct: 371 QLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKE 430

Query: 342 IAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGF 401
           +  A+ +L D  K+ RYD G+D++E GM  G F+         F    G PGGF  +   
Sbjct: 431 VGEAFTILSDPKKKTRYDSGQDLDEEGMNMGDFDANN-----IFKAFFGGPGGFSFEASG 485

Query: 402 PGGFGFNF 409
           PG F F F
Sbjct: 486 PGNFYFQF 493

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
255557030	486	Chaperone protein dnaJ, putative [Ricinu	0.894	0.753	0.815	1e-177
225439936	467	PREDICTED: dnaJ homolog subfamily C memb	0.965	0.845	0.810	1e-175
224138670	484	predicted protein [Populus trichocarpa]	0.948	0.801	0.779	1e-171
356572429	502	PREDICTED: dnaJ homolog subfamily C memb	0.894	0.729	0.794	1e-170
356505208	479	PREDICTED: dnaJ homolog subfamily C memb	0.897	0.766	0.784	1e-168
357510651	475	DnaJ homolog subfamily C member-like pro	0.946	0.814	0.765	1e-167
449450980	498	PREDICTED: dnaJ homolog subfamily C memb	0.948	0.779	0.782	1e-167
350538211	492	P58IPK [Solanum lycopersicum] gi|3239591	0.894	0.743	0.770	1e-158
297806265	482	DNAJ heat shock N-terminal domain-contai	0.892	0.757	0.775	1e-152
57899528	471	putative P58IPK [Oryza sativa Japonica G	0.948	0.823	0.720	1e-152

>gi|255557030|ref|XP_002519548.1| Chaperone protein dnaJ, putative [Ricinus communis] gi|223541411|gb|EEF42962.1| Chaperone protein dnaJ, putative [Ricinus communis]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/379 (81%), Positives = 343/379 (90%), Gaps = 13/379 (3%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           +K YSEAL+DLN AIE+DP+LSEAYF R S+LR LCR             +K ++SVAEK
Sbjct: 60  VKRYSEALNDLNAAIESDPSLSEAYFRRASILRHLCRYEESEKSYTKLLELKPKHSVAEK 119

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQL QA+S  D+A  L+DSG+YTK LEY+DKVVLVFSP+CSKAKLLKV+LLLA KDY+
Sbjct: 120 ELSQLNQAKSALDTAFSLFDSGDYTKSLEYVDKVVLVFSPSCSKAKLLKVRLLLAVKDYS 179

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
           + ISE+G++LKEDENNLEALL RGRAYYYLADHDVA +H+QKGLRLDPEHSELKKAYF L
Sbjct: 180 AVISESGFILKEDENNLEALLLRGRAYYYLADHDVASKHYQKGLRLDPEHSELKKAYFGL 239

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           KNLLKKTKSAEDNV+KGKLRVAVED+KAALALDPNH AHNVHL+LGLCKVLVKLGRGKDA
Sbjct: 240 KNLLKKTKSAEDNVNKGKLRVAVEDYKAALALDPNHLAHNVHLHLGLCKVLVKLGRGKDA 299

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           L SC EALNI+ EL+EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL+RAEK
Sbjct: 300 LDSCNEALNIDGELLEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALLRAEK 359

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
           ALKMSKR+DWYKILGVSKTASI+EIKRAYKKLALQWHPDKNVD REEAE KFRE+AAAYE
Sbjct: 360 ALKMSKRQDWYKILGVSKTASIAEIKRAYKKLALQWHPDKNVDKREEAEAKFREVAAAYE 419

Query: 348 VLGDDDKRARYDRGEDIEE 366
           VLGD++KR+RYDRGEDIEE
Sbjct: 420 VLGDEEKRSRYDRGEDIEE 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439936|ref|XP_002280406.1| PREDICTED: dnaJ homolog subfamily C member 3 homolog [Vitis vinifera] gi|297741582|emb|CBI32714.3| unnamed protein product [Vitis vinifera]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 334/412 (81%), Positives = 366/412 (88%), Gaps = 17/412 (4%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           +K YSEALDDLN AIEADPTLSEAY+HR S+LRQ+CR             +   NS AEK
Sbjct: 54  VKRYSEALDDLNAAIEADPTLSEAYWHRASILRQICRYEESEKTYKKFLELNPGNSAAEK 113

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQL Q+QS  D+A  L+++G +TK L+YIDKVVLVFSPAC+KAKLLKVKLLLAAKDY+
Sbjct: 114 ELSQLSQSQSALDTASNLFETGGFTKALDYIDKVVLVFSPACAKAKLLKVKLLLAAKDYS 173

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
           SAISETGY+LKEDENNLEALL RGRAYYYLADHDVA RH+QKGLRLDPEH ELKKAYF L
Sbjct: 174 SAISETGYMLKEDENNLEALLLRGRAYYYLADHDVAIRHYQKGLRLDPEHGELKKAYFGL 233

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           KNLLKKTKSAEDNV+KGKLR+AVEDFK AL+LDPNH AHNVHL+LGLCKVLV+LGRGKDA
Sbjct: 234 KNLLKKTKSAEDNVNKGKLRLAVEDFKGALSLDPNHLAHNVHLHLGLCKVLVQLGRGKDA 293

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           L SCTEALNI+E+LI+ALVQRGEAKLLTEDWEGAVEDLKSAAQ+SPQDMNIREALMRAEK
Sbjct: 294 LISCTEALNIDEDLIDALVQRGEAKLLTEDWEGAVEDLKSAAQRSPQDMNIREALMRAEK 353

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
           +LK+SKRKDWYKILGVSKTA +SEIKRAYKKLALQWHPDKNVDNREEAE +FREIAAAYE
Sbjct: 354 SLKLSKRKDWYKILGVSKTAPVSEIKRAYKKLALQWHPDKNVDNREEAEAQFREIAAAYE 413

Query: 348 VLGDDDKRARYDRGEDIEE----TGMGGGGFNFGGGGQQFTFHFEGGFPGGF 395
           VLGD++KR RYDRGEDIE+     G GGG   FGGGGQQFTFHFEGGFPGGF
Sbjct: 414 VLGDEEKRTRYDRGEDIEDMGMGGGGGGGFNPFGGGGQQFTFHFEGGFPGGF 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138670|ref|XP_002322872.1| predicted protein [Populus trichocarpa] gi|222867502|gb|EEF04633.1| predicted protein [Populus trichocarpa]

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 314/403 (77%), Positives = 350/403 (86%), Gaps = 15/403 (3%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           +K YS+ALDDLN AIEADP+LSEAY  R S+LRQLCR             +K  +  AEK
Sbjct: 62  LKRYSDALDDLNAAIEADPSLSEAYIRRASILRQLCRYNESEKSYKKFLELKPGHLTAEK 121

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQL QAQS  D+AL L DSG+Y K LEY+DKVVLVFSPACS+AKLL+VKLLLA +DY+
Sbjct: 122 ELSQLHQAQSALDTALTLLDSGDYAKSLEYVDKVVLVFSPACSEAKLLRVKLLLAVQDYS 181

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
           + ISE GY+LKEDENNLEALL RGRAYYYLADHDVA +H+QKGLRLDPEHS+LKKAYF L
Sbjct: 182 AVISEAGYILKEDENNLEALLLRGRAYYYLADHDVATKHYQKGLRLDPEHSQLKKAYFGL 241

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           KNLLKKTK+AEDN SKGKLRVAVED++AALALDP+H AHNVHL+LGLCKVLVKLGRGKDA
Sbjct: 242 KNLLKKTKNAEDNASKGKLRVAVEDYRAALALDPHHLAHNVHLHLGLCKVLVKLGRGKDA 301

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           L+SC EALNI  EL+EALVQRGEAKL+ EDWEGAVEDLKSAA++SPQDM+IREALM+AEK
Sbjct: 302 LTSCNEALNIEGELLEALVQRGEAKLIVEDWEGAVEDLKSAAEKSPQDMSIREALMKAEK 361

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
           ALKMSKR+DWYKILG+SKTAS+SEIKRAYKKLALQWHPDKNVDNREEAE KFR+IAAAYE
Sbjct: 362 ALKMSKRRDWYKILGISKTASVSEIKRAYKKLALQWHPDKNVDNREEAEAKFRDIAAAYE 421

Query: 348 VLGDDDKRARYDR--GEDIEETGMGGGGFNFGGGGQQFTFHFE 388
           VLGDDDKRARYDR    +    G GGGG  FGGGGQQF+FHFE
Sbjct: 422 VLGDDDKRARYDRGEDMEDMGMGGGGGGNPFGGGGQQFSFHFE 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572429|ref|XP_003554371.1| PREDICTED: dnaJ homolog subfamily C member 3 homolog [Glycine max]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 301/379 (79%), Positives = 334/379 (88%), Gaps = 13/379 (3%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           +K Y+EALDDLN AIEADPTLS+AY  R SVLRQLCR             +K  +S AEK
Sbjct: 65  VKDYTEALDDLNAAIEADPTLSKAYLFRASVLRQLCRYEQSERSYKKFLELKPGDSAAEK 124

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQLLQAQS  ++A  LYDSG ++K LEYIDKVVLVFS AC+KAKLLKVK+L+A K+Y 
Sbjct: 125 ELSQLLQAQSALETAQSLYDSGNFSKSLEYIDKVVLVFSSACNKAKLLKVKVLIADKEYE 184

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
           SAI+E+G+LLKEDENNLEALL RGRAYYYLADHDVA RHFQKGLRLDPEHSELKKAYF L
Sbjct: 185 SAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGL 244

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           KNLLKK+KSAEDN SKGKLRVAVE+FKAALA+DP H AHNVHL+LGLCKVLVKLGRGKDA
Sbjct: 245 KNLLKKSKSAEDNASKGKLRVAVEEFKAALAVDPIHLAHNVHLHLGLCKVLVKLGRGKDA 304

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           L SC+E L I+EEL+EALVQRGEAKLLTEDWEGAVEDL+SAAQ+ PQDMNIREA+MRAEK
Sbjct: 305 LDSCSEVLKIDEELVEALVQRGEAKLLTEDWEGAVEDLRSAAQKLPQDMNIREAVMRAEK 364

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
           ALK+SKRKD+YKILG+SKTAS ++IKRAYKKLALQWHPDKNVD REEAE KFREIAAAYE
Sbjct: 365 ALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYE 424

Query: 348 VLGDDDKRARYDRGEDIEE 366
           VL D+DKR RYDRGED+EE
Sbjct: 425 VLSDEDKRVRYDRGEDLEE 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505208|ref|XP_003521384.1| PREDICTED: dnaJ homolog subfamily C member 3 homolog [Glycine max]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/380 (78%), Positives = 334/380 (87%), Gaps = 13/380 (3%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           +K Y+EALDDLN AIEADPTLS+AY  R SVLRQLCR             +K  +S AEK
Sbjct: 54  VKDYTEALDDLNAAIEADPTLSKAYLFRASVLRQLCRYEQSERSYKKFLELKPGDSAAEK 113

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQLLQAQS  ++A  LYDSG ++K LEYIDKVVLVFS AC+KAKLLKVK+L+A K+Y 
Sbjct: 114 ELSQLLQAQSALETAQSLYDSGNFSKSLEYIDKVVLVFSSACNKAKLLKVKVLIADKEYE 173

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
           SAI+E+G+LLKEDENNLEALL RGRAYYYLADHDVA RHFQKGLRLDPEHSELKKAYF L
Sbjct: 174 SAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGL 233

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           KNLLKK+KSAEDN +KGKLRVAVE+FKAALA+DP H AHNV L+ GLCKVLVKLGRGKDA
Sbjct: 234 KNLLKKSKSAEDNANKGKLRVAVEEFKAALAVDPIHLAHNVDLHFGLCKVLVKLGRGKDA 293

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           L SC+EAL I+EEL+EALVQRGEAKLLTEDWEGAVEDL+SAAQ+SPQDMNIREA+MRAEK
Sbjct: 294 LDSCSEALKIDEELVEALVQRGEAKLLTEDWEGAVEDLRSAAQKSPQDMNIREAVMRAEK 353

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
           ALK+SKRKD+YKILG+SKTAS ++IKRAYKKLALQWHPDKNV+ REEAE +FREIAAAYE
Sbjct: 354 ALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVEKREEAEAQFREIAAAYE 413

Query: 348 VLGDDDKRARYDRGEDIEET 367
           VL D+DKR RYDRGED+EE 
Sbjct: 414 VLSDEDKRVRYDRGEDLEEA 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510651|ref|XP_003625614.1| DnaJ homolog subfamily C member-like protein [Medicago truncatula] gi|355500629|gb|AES81832.1| DnaJ homolog subfamily C member-like protein [Medicago truncatula]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 310/405 (76%), Positives = 350/405 (86%), Gaps = 18/405 (4%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEKE 48
           KHY+EAL+DL+ AIEADP LSEAY  + SVLR+LCR             +K  +S+AEKE
Sbjct: 51  KHYTEALNDLDAAIEADPNLSEAYLSQASVLRKLCRYEQSERSYKKFLELKPGHSIAEKE 110

Query: 49  LSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYAS 108
           LSQLLQAQS   +A  LY+S  +TK LEYIDKVVLVFSPAC+KAKLLKV+LL+A K+Y  
Sbjct: 111 LSQLLQAQSALQTAQSLYESANFTKSLEYIDKVVLVFSPACTKAKLLKVRLLIADKEYEG 170

Query: 109 AISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK 168
           AI+E+G+LLKEDENNLEALL RGRAYYYLADHDV+ RH+QKGLRLDPEHSELKKAYF LK
Sbjct: 171 AIAESGFLLKEDENNLEALLLRGRAYYYLADHDVSTRHYQKGLRLDPEHSELKKAYFGLK 230

Query: 169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDAL 228
           NLLKK+KSAEDN SKGKLRVAVE+FKAALA+DP+H AHNVHL+LGLCKVLV+LGRGKDAL
Sbjct: 231 NLLKKSKSAEDNASKGKLRVAVEEFKAALAVDPDHLAHNVHLHLGLCKVLVRLGRGKDAL 290

Query: 229 SSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288
           +SC+EAL I+EELI+ALVQRGEAKLLTEDWEGAVEDLKSAAQ+SPQDMNIREALMRAEKA
Sbjct: 291 NSCSEALKIDEELIDALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIREALMRAEKA 350

Query: 289 LKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEV 348
           LK+SKRKD+YKIL +SK AS +EIKRAYKKLALQWHPDKNVD REEAE KFREIAAAYEV
Sbjct: 351 LKISKRKDYYKILEISKHASAAEIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEV 410

Query: 349 LGDDDKRARYDRGEDIEET-----GMGGGGFNFGGGGQQFTFHFE 388
           L D+DKR RYD+GED+EE+     G GGG   FGGGGQQF F F+
Sbjct: 411 LSDEDKRTRYDQGEDLEESGMGGGGGGGGFNPFGGGGQQFHFTFD 455

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450980|ref|XP_004143240.1| PREDICTED: dnaJ homolog subfamily C member 3 homolog [Cucumis sativus] gi|449482505|ref|XP_004156303.1| PREDICTED: dnaJ homolog subfamily C member 3 homolog [Cucumis sativus]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 317/405 (78%), Positives = 355/405 (87%), Gaps = 17/405 (4%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           +K YSEALDDLN AIEADP LSEAYFHRGS+LR+LCR             +K  N   EK
Sbjct: 64  VKRYSEALDDLNAAIEADPKLSEAYFHRGSILRKLCRYNESEENYKKYLELKPGNPAGEK 123

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQLLQAQS  ++ALK +D+G++TK LE++DKVVLVFSPACS+AKLLKVKLLLA +DY+
Sbjct: 124 ELSQLLQAQSALETALKHFDTGDHTKALEFLDKVVLVFSPACSEAKLLKVKLLLATRDYS 183

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
           +AI  TGY+LKEDENNL+ALL RGRAYYYLADHDVA RHFQKGLRLDPEH ELKKAYF L
Sbjct: 184 AAILHTGYILKEDENNLDALLLRGRAYYYLADHDVASRHFQKGLRLDPEHVELKKAYFGL 243

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           KNLLKKTKSAEDNV+KGKLR+AVE++ AALALDP H AHNVHL+LGLCKVLVKLGRGKDA
Sbjct: 244 KNLLKKTKSAEDNVNKGKLRLAVEEYNAALALDPKHLAHNVHLHLGLCKVLVKLGRGKDA 303

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           ++SC EALNI+ +LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ SPQDMNIREALMRAEK
Sbjct: 304 VTSCNEALNIDGDLIEALVQRGEAKLLTEDWEGAVEDLKSAAQSSPQDMNIREALMRAEK 363

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
           ALKMSKRKDWYKILGVSKTAS++EIKRAYKKLALQWHPDKNV+NREEAE KF++IAAAYE
Sbjct: 364 ALKMSKRKDWYKILGVSKTASVAEIKRAYKKLALQWHPDKNVENREEAEAKFQDIAAAYE 423

Query: 348 VLGDDDKRARYDRGEDIEE----TGMGGGGFNFGGGGQQFTFHFE 388
           VLG+++KR R+DRGEDIE+     G GGG   FGGGGQQFTF F+
Sbjct: 424 VLGNEEKRTRFDRGEDIEDMGMGGGGGGGFNPFGGGGQQFTFTFD 468

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538211|ref|NP_001234332.1| P58IPK [Solanum lycopersicum] gi|32395916|gb|AAP41818.1| P58IPK [Solanum lycopersicum]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/379 (77%), Positives = 334/379 (88%), Gaps = 13/379 (3%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           +K YSEAL+DLN+AIEADPTLSEAY+HR S+LRQLCR             +K R+S AEK
Sbjct: 64  VKKYSEALNDLNSAIEADPTLSEAYWHRASLLRQLCRYEESEKSYKKFLEMKPRDSAAEK 123

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQ+ QA+S  DSA  L D+ +  K LEYIDKVVLVFSPACSKAKLLKVKLLLA KDY+
Sbjct: 124 ELSQMHQAKSALDSATNLLDTDDIKKALEYIDKVVLVFSPACSKAKLLKVKLLLADKDYS 183

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
             ISE G++LKEDE+NLEALL RGRAYYYLADHDV+ RH+QKGLR DPEH ELKKAYF L
Sbjct: 184 GVISEAGFILKEDEDNLEALLLRGRAYYYLADHDVSLRHYQKGLRSDPEHGELKKAYFGL 243

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           KNLLKKTKSA+DNVSKGK R+AVE++KAALALDPNH+AHN++L+LGLCKVLVKLGRGKDA
Sbjct: 244 KNLLKKTKSADDNVSKGKFRLAVEEYKAALALDPNHSAHNINLHLGLCKVLVKLGRGKDA 303

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           +SSC+EAL ++ ELI+ALVQRGEAKLLTEDWEGAV DLK AA++SPQD NIRE LMRAE+
Sbjct: 304 ISSCSEALELDGELIDALVQRGEAKLLTEDWEGAVADLKEAAEKSPQDRNIREVLMRAER 363

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
           +LK+SKRKDWYKILGVSKT+S+SEIK+AYKKLALQWHPDKNVDNREEAE KFREIAAAYE
Sbjct: 364 SLKLSKRKDWYKILGVSKTSSVSEIKKAYKKLALQWHPDKNVDNREEAEEKFREIAAAYE 423

Query: 348 VLGDDDKRARYDRGEDIEE 366
           VLGD++KR RYD+GEDIE+
Sbjct: 424 VLGDEEKRTRYDQGEDIED 442

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806265|ref|XP_002871016.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316853|gb|EFH47275.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/379 (77%), Positives = 326/379 (86%), Gaps = 14/379 (3%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           +K +S+ALDDLN AIEADP LSEAYF R SVLR  CR              K+ +S AEK
Sbjct: 63  VKRFSDALDDLNAAIEADPALSEAYFKRASVLRHFCRYQDSENNYQKYLEFKSGDSNAEK 122

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQL QAQS  ++A  LY+S +  K LE++DKVVLVFSPACSKAKLLKVKLL+ +KDY+
Sbjct: 123 ELSQLHQAQSALETASTLYESKDVAKALEFVDKVVLVFSPACSKAKLLKVKLLMVSKDYS 182

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
            AISETGY+LKEDENNLEALL RGRAYYYLADHD+AQRH+QKGLRLDPEHSELKKAYF L
Sbjct: 183 GAISETGYILKEDENNLEALLLRGRAYYYLADHDIAQRHYQKGLRLDPEHSELKKAYFGL 242

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           K LLKKTKSAEDN SKGKLRV+ E++K A+ALDP HTA+NVHLYLGLCKV V+LGRGKD 
Sbjct: 243 KKLLKKTKSAEDNASKGKLRVSAEEYKEAIALDPEHTANNVHLYLGLCKVSVRLGRGKDG 302

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           L+SC EALNI+ ELIEAL QRGEAKLL EDWEGAVEDLK AAQ S QDM I EAL RAEK
Sbjct: 303 LNSCNEALNIDAELIEALHQRGEAKLLLEDWEGAVEDLKQAAQNS-QDMEIHEALGRAEK 361

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
           ALKMSKRKDWYKILG+S+TASI+EIK+AYKKLALQWHPDKNVDNREEAENKFREIAAAYE
Sbjct: 362 ALKMSKRKDWYKILGISRTASIAEIKKAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 421

Query: 348 VLGDDDKRARYDRGEDIEE 366
           VLGDDDKRAR+DRGED+E+
Sbjct: 422 VLGDDDKRARFDRGEDLED 440

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57899528|dbj|BAD87042.1| putative P58IPK [Oryza sativa Japonica Group]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/404 (72%), Positives = 338/404 (83%), Gaps = 16/404 (3%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-------------VKARNSVAEK 47
           ++ Y  +L  LN  +E DP  SEAY  R SVLR  CR             +K  +S  EK
Sbjct: 45  LRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEK 104

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           ELSQLLQAQ+  +SA   ++S +++K LEYI+K+VLVFSP C KAKLLK K LLA +DY+
Sbjct: 105 ELSQLLQAQNALESAYGQFESHDFSKVLEYINKIVLVFSPNCLKAKLLKAKALLALEDYS 164

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
           S ISETG++LKEDE+NL+ALL RGRAYYYLADHDVA RH+QKGLRLDPEHSELKKAYF L
Sbjct: 165 SVISETGFILKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSELKKAYFGL 224

Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           KNLLKKTKSAEDN +KGKLRV+ ED+KAALA+DP+HT++NVHLYLGLCKVLVKLGRGK+A
Sbjct: 225 KNLLKKTKSAEDNAAKGKLRVSAEDYKAALAMDPDHTSYNVHLYLGLCKVLVKLGRGKEA 284

Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           +SSCTEALNI+ EL++AL QRGEAKLLTEDWEGAV+DLK A+Q+SPQDM IREALMRAEK
Sbjct: 285 ISSCTEALNIDGELVDALTQRGEAKLLTEDWEGAVQDLKEASQKSPQDMGIREALMRAEK 344

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
            LK+SKRKDWYKILG+SKTAS ++IKRAYKKLALQWHPDKNVDNREEAEN FREIAAAYE
Sbjct: 345 QLKLSKRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAENMFREIAAAYE 404

Query: 348 VLGDDDKRARYDRGEDIEE---TGMGGGGFNFGGGGQQFTFHFE 388
           VLGD+DKR RYDRGED++E    G GGG   FGGGGQQ+TFH++
Sbjct: 405 VLGDEDKRVRYDRGEDLDEMNMGGGGGGFNPFGGGGQQYTFHYD 448

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2143553	482	P58IPK "AT5G03160" [Arabidopsi	0.892	0.757	0.736	8.6e-143
DICTYBASE|DDB_G0286251	502	dnajc3 "TPR repeat-containing	0.877	0.715	0.314	2.2e-50
UNIPROTKB|Q13217	504	DNAJC3 "DnaJ homolog subfamily	0.775	0.628	0.330	3.7e-48
UNIPROTKB|F1P053	504	DNAJC3 "DnaJ homolog subfamily	0.777	0.630	0.317	7.7e-48
UNIPROTKB|Q5ZI13	503	DNAJC3 "DnaJ homolog subfamily	0.777	0.632	0.317	7.7e-48
MGI|MGI:107373	504	Dnajc3 "DnaJ (Hsp40) homolog,	0.775	0.628	0.330	2.6e-47
UNIPROTKB|F1NPY5	469	DNAJC7 "Uncharacterized protei	0.875	0.763	0.313	1.6e-45
UNIPROTKB|F1NPY6	486	DNAJC7 "Uncharacterized protei	0.875	0.736	0.313	1.6e-45
UNIPROTKB|Q99615	494	DNAJC7 "DnaJ homolog subfamily	0.875	0.724	0.315	1.4e-44
UNIPROTKB|F1S0P4	494	DNAJC7 "Uncharacterized protei	0.875	0.724	0.315	1.4e-44

TAIR|locus:2143553 P58IPK "AT5G03160" [Arabidopsis thaliana (taxid:3702)]

 Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
 Identities = 279/379 (73%), Positives = 312/379 (82%)

Query:     1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRV-------------KARNSVAEK 47
             +K YS+ALDDLN AIEADP LSEAYF R SVLR  CR              K+ +S AEK
Sbjct:    63 VKRYSDALDDLNAAIEADPALSEAYFKRASVLRHFCRYEDSENSYQKYLEFKSGDSNAEK 122

Query:    48 ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYA 107
             ELSQL QA+S  ++A  LY+S +  K LE++DKVVLVFSPACS              DY+
Sbjct:   123 ELSQLHQAKSALETASTLYESKDIAKALEFVDKVVLVFSPACSKAKLLKVKLLMVSKDYS 182

Query:   108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
              AISETGY+LKEDENNLEALL RGRAYYYLADHD+AQRH+QKGLRLDPEHSELKKAYF L
Sbjct:   183 GAISETGYILKEDENNLEALLLRGRAYYYLADHDIAQRHYQKGLRLDPEHSELKKAYFGL 242

Query:   168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
             K LLKKTKSAEDN +KGKLRV+ E++K A+ALDP HTA+NVHLYLGLCKV V+LGRGKD 
Sbjct:   243 KKLLKKTKSAEDNANKGKLRVSAEEYKEAIALDPEHTANNVHLYLGLCKVSVRLGRGKDG 302

Query:   228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
             L+SC EALNI+ ELIEAL QRGEAKLL EDWEGAVEDLK AAQ S QDM I E+L +AEK
Sbjct:   303 LNSCNEALNIDAELIEALHQRGEAKLLLEDWEGAVEDLKQAAQNS-QDMEIHESLGKAEK 361

Query:   288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE 347
             ALKMSKRKDWYKILG+S+TASISEIK+AYKKLALQWHPDKNV NREEAENKFREIAAAYE
Sbjct:   362 ALKMSKRKDWYKILGISRTASISEIKKAYKKLALQWHPDKNVGNREEAENKFREIAAAYE 421

Query:   348 VLGDDDKRARYDRGEDIEE 366
             +LGDDDKRAR+DRGED+E+
Sbjct:   422 ILGDDDKRARFDRGEDLED 440

GO:0006457 "protein folding" evidence=ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

DICTYBASE|DDB_G0286251 dnajc3 "TPR repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 118/375 (31%), Positives = 206/375 (54%)

Query:     7 ALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-----------VKAR--NSVAEKELSQLL 53
             AL DLN AIEA+P    A   R  +   L R           +K R  NS A++++ +L 
Sbjct:    88 ALSDLNRAIEANPDNIHARLKRAKIQSSLGRFEEAMDEYKRVLKIRPDNSQAKQQIEKLK 147

Query:    54 QAQSTFDSALKLYD-SGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAISE 112
             + +   +    +      Y   +  +  +  V S                  D+   + E
Sbjct:   148 KVEQQLEKVRDMVKVEKNYKDSIAILLDIQSVVSDL-KEVRLMLCECFFQQGDHRKVLDE 206

Query:   113 TGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172
             T  +LK + +++ AL  RG+ ++ + + ++A +  ++GL+ DP+++  +     +    K
Sbjct:   207 TMTILKSEPSSVAALYWRGKTFFSMGEKEIAMKFLKEGLKFDPDNTNCRAMIKTINKFEK 266

Query:   173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232
              T +A++  ++ K + A+   + AL ++PN   H+  LYL  CK L+K+ +GK+++ +C 
Sbjct:   267 STANAQELFNQQKYQDALGQIEDALEIEPNSPTHSTPLYLLKCKCLLKVKKGKESIEACN 326

Query:   233 EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS 292
              AL ++E   +AL  R EA +  ED++ A+ D   A +  P D  I + + RA+KA +M+
Sbjct:   327 RALELDELNADALYNRAEAYMYEEDYQKALNDYNKAREHKPNDPQIHDGIRRAQKAQQMA 386

Query:   293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD-NREEAENKFREIAAAYEVLGD 351
             KRKD+YKILG+ K+A+  EIK+A+KKLA++ HPDK+ + ++E+A+  + +I  AYE L D
Sbjct:   387 KRKDYYKILGIQKSATPEEIKKAFKKLAIKNHPDKSTETDKEKAQQIYMDINEAYEALKD 446

Query:   352 DDKRARYDRGEDIEE 366
             ++KR RYD GEDI +
Sbjct:   447 EEKRKRYDMGEDIND 461

GO:0006469 "negative regulation of protein kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0004860 "protein kinase inhibitor activity" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q13217 DNAJC3 "DnaJ homolog subfamily C member 3" [Homo sapiens (taxid:9606)]

 Score = 457 (165.9 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
 Identities = 107/324 (33%), Positives = 176/324 (54%)

Query:    46 EKEL-SQLLQA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXX 101
             EKE  SQL+++   Q     AL  + SG+YT  + ++DK++ V     +           
Sbjct:   141 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFI 199

Query:   102 XXXDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161
                +   AIS+     K   +N EA       YY L DH+++    ++ L+LD +H    
Sbjct:   200 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 259

Query:   162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL 221
               Y  +K L K  +SAE+ +  G+   A   +++ +  +P+   + V     +C    K 
Sbjct:   260 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 319

Query:   222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281
              +  +A+  C+E L +  + + AL  R EA L+ E ++ A++D ++A + +  D  IRE 
Sbjct:   320 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 379

Query:   282 LMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKF 339
             L +A++ LK S+++D+YKILGV + A   EI +AY+KLALQWHPD  +N + +++AE KF
Sbjct:   380 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 439

Query:   340 REIAAAYEVLGDDDKRARYDRGED 363
              +IAAA EVL D + R ++D GED
Sbjct:   440 IDIAAAKEVLSDPEMRKKFDDGED 463

GO:0051607 "defense response to virus" evidence=IEA

GO:0031205 "endoplasmic reticulum Sec complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0004860 "protein kinase inhibitor activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=TAS

UNIPROTKB|F1P053 DNAJC3 "DnaJ homolog subfamily C member 3" [Gallus gallus (taxid:9031)]

 Score = 454 (164.9 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 102/321 (31%), Positives = 174/321 (54%)

Query:    45 AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXX 104
             A+ +L++  + Q  +  AL  Y   +Y   +  +D+++ V     +              
Sbjct:   144 AQTQLTKSDELQRLYSQALSAYRQEDYEAAIPLLDEILAV-CVWDAELRELRAECYIKEG 202

Query:   105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
             + + AIS+     K   +N EA     R YY L DH+++    ++ L+LD +H +    Y
Sbjct:   203 EPSKAISDLKAAAKLKSDNTEAFYKISRIYYQLGDHELSLSEVRECLKLDQDHKQCFSLY 262

Query:   165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224
               +K L K+ +SAE+ + +G+   A+  + + +  +P+   +       +C  L K  + 
Sbjct:   263 KQVKKLNKQIESAEEFIREGRYEDAISKYDSVMKTEPDVPVYATRAKERICHCLSKNQQA 322

Query:   225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284
              +A++ CT+ L +    + AL  R EA LL + +E A++D ++A   S  D  IRE L R
Sbjct:   323 TEAITVCTQVLQLEPTNVNALKDRAEAYLLEDLYEEAIKDYETAQANSENDQQIREGLER 382

Query:   285 AEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREI 342
             A++ LK S+++D+YKILGV + A   EI +AY+KLA QWHPD  ++ + +++AE KF +I
Sbjct:   383 AQRMLKQSQKRDYYKILGVKRNARKQEIIKAYRKLASQWHPDNFQSEEEKKKAEKKFIDI 442

Query:   343 AAAYEVLGDDDKRARYDRGED 363
             AAA EVL D + R ++D GED
Sbjct:   443 AAAKEVLTDPEMRRKFDAGED 463

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0031205 "endoplasmic reticulum Sec complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

UNIPROTKB|Q5ZI13 DNAJC3 "DnaJ homolog subfamily C member 3" [Gallus gallus (taxid:9031)]

 Score = 454 (164.9 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 102/321 (31%), Positives = 174/321 (54%)

Query:    45 AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXX 104
             A+ +L++  + Q  +  AL  Y   +Y   +  +D+++ V     +              
Sbjct:   143 AQTQLTKSDELQRLYSQALSAYRQEDYEAAIPLLDEILAV-CVWDAELRELRAECYIKEG 201

Query:   105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
             + + AIS+     K   +N EA     R YY L DH+++    ++ L+LD +H +    Y
Sbjct:   202 EPSKAISDLKAAAKLKSDNTEAFYKISRIYYQLGDHELSLSEVRECLKLDQDHKQCFSLY 261

Query:   165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224
               +K L K+ +SAE+ + +G+   A+  + + +  +P+   +       +C  L K  + 
Sbjct:   262 KQVKKLNKQIESAEEFIREGRYEDAISKYDSVMKTEPDVPVYATRAKERICHCLSKNQQA 321

Query:   225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284
              +A++ CT+ L +    + AL  R EA LL + +E A++D ++A   S  D  IRE L R
Sbjct:   322 TEAITVCTQVLQLEPTNVNALKDRAEAYLLEDLYEEAIKDYETAQANSENDQQIREGLER 381

Query:   285 AEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREI 342
             A++ LK S+++D+YKILGV + A   EI +AY+KLA QWHPD  ++ + +++AE KF +I
Sbjct:   382 AQRMLKQSQKRDYYKILGVKRNARKQEIIKAYRKLASQWHPDNFQSEEEKKKAEKKFIDI 441

Query:   343 AAAYEVLGDDDKRARYDRGED 363
             AAA EVL D + R ++D GED
Sbjct:   442 AAAKEVLTDPEMRRKFDAGED 462

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0031205 "endoplasmic reticulum Sec complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

MGI|MGI:107373 Dnajc3 "DnaJ (Hsp40) homolog, subfamily C, member 3" [Mus musculus (taxid:10090)]

 Score = 455 (165.2 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
 Identities = 107/324 (33%), Positives = 175/324 (54%)

Query:    46 EKEL-SQLLQA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXX 101
             EKE  SQL++A   Q     AL  +D  +YT  + ++DK++ V     +           
Sbjct:   141 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRELRAECFI 199

Query:   102 XXXDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161
                +   AIS+     K   +N EA       YY L DH+++    ++ L+LD +H    
Sbjct:   200 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 259

Query:   162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL 221
               Y  +K L K  +SAE+ +  G+   A   +++ +  +P+   + V     +C    K 
Sbjct:   260 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 319

Query:   222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281
              +  +A+  C+E L +  + + AL  R EA L+ E ++ A++D ++A + +  D  IRE 
Sbjct:   320 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 379

Query:   282 LMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKF 339
             L +A++ LK S+++D+YKILGV + A   EI +AY+KLALQWHPD  +N + +++AE KF
Sbjct:   380 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 439

Query:   340 REIAAAYEVLGDDDKRARYDRGED 363
              +IAAA EVL D + R ++D GED
Sbjct:   440 IDIAAAKEVLSDPEMRKKFDDGED 463

GO:0004860 "protein kinase inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IC

GO:0031205 "endoplasmic reticulum Sec complex" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IDA

GO:0051787 "misfolded protein binding" evidence=IDA

UNIPROTKB|F1NPY5 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 448 (162.8 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 120/383 (31%), Positives = 191/383 (49%)

Query:     4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS---QLLQAQSTFD 60
             + EAL D   ++  D +    +   G     L    A +   ++ L    +  QAQ    
Sbjct:    53 FREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAASRCFQRVLELDHKNTQAQQELK 112

Query:    61 SALKL----------YDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAI 110
             +A  +          ++  ++ K +  +D+  L F+PAC                Y  A 
Sbjct:   113 NASTVLEYEKIAEVDFEKRDFRKVVFCMDRA-LEFAPACHRFKILKAECLALLGRYPEAQ 171

Query:   111 SETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170
             S    +L+ D  N +AL  RG   YY    + A + F + LR+ P+H   +KA  A +N 
Sbjct:   172 SVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH---EKACLACRNA 228

Query:   171 LK-KTKSAEDNVS--KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
                K K  + N +  +G  ++A E +  AL +DPN+   N  LY     V  KL + ++A
Sbjct:   229 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEEA 288

Query:   228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
             +  CT A+ ++E  I+A ++R +  + TE +E AV D +    Q+ +    ++ L  A+ 
Sbjct:   289 IDDCTNAVKLDETYIKAYLRRAQCYMDTEQYEDAVRDYEKV-YQTEKTKEHKQLLKNAQM 347

Query:   288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN----VDNREEAENKFREIA 343
              LK SKRKD+YKILGV K AS  EIK+AY+K AL  HPD++     + ++E E KF+E+ 
Sbjct:   348 ELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVG 407

Query:   344 AAYEVLGDDDKRARYDRGEDIEE 366
              A+ +L D  K+ARYD G+D+EE
Sbjct:   408 EAFTILSDPKKKARYDSGQDLEE 430

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

UNIPROTKB|F1NPY6 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 448 (162.8 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 120/383 (31%), Positives = 191/383 (49%)

Query:     4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS---QLLQAQSTFD 60
             + EAL D   ++  D +    +   G     L    A +   ++ L    +  QAQ    
Sbjct:    70 FREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAASRCFQRVLELDHKNTQAQQELK 129

Query:    61 SALKL----------YDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAI 110
             +A  +          ++  ++ K +  +D+  L F+PAC                Y  A 
Sbjct:   130 NASTVLEYEKIAEVDFEKRDFRKVVFCMDRA-LEFAPACHRFKILKAECLALLGRYPEAQ 188

Query:   111 SETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170
             S    +L+ D  N +AL  RG   YY    + A + F + LR+ P+H   +KA  A +N 
Sbjct:   189 SVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH---EKACLACRNA 245

Query:   171 LK-KTKSAEDNVS--KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
                K K  + N +  +G  ++A E +  AL +DPN+   N  LY     V  KL + ++A
Sbjct:   246 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEEA 305

Query:   228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
             +  CT A+ ++E  I+A ++R +  + TE +E AV D +    Q+ +    ++ L  A+ 
Sbjct:   306 IDDCTNAVKLDETYIKAYLRRAQCYMDTEQYEDAVRDYEKV-YQTEKTKEHKQLLKNAQM 364

Query:   288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN----VDNREEAENKFREIA 343
              LK SKRKD+YKILGV K AS  EIK+AY+K AL  HPD++     + ++E E KF+E+ 
Sbjct:   365 ELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVG 424

Query:   344 AAYEVLGDDDKRARYDRGEDIEE 366
              A+ +L D  K+ARYD G+D+EE
Sbjct:   425 EAFTILSDPKKKARYDSGQDLEE 447

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

UNIPROTKB|Q99615 DNAJC7 "DnaJ homolog subfamily C member 7" [Homo sapiens (taxid:9606)]

 Score = 441 (160.3 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 121/383 (31%), Positives = 189/383 (49%)

Query:     4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKA--RNSVAEKELSQL-LQAQSTFD 60
             + EAL D   ++  D +    +   G     L    A  R+     EL     QAQ  F 
Sbjct:    78 FREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFK 137

Query:    61 SALKL----------YDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAI 110
             +A  +          ++  ++ K +  +D+  L F+PAC                Y  A 
Sbjct:   138 NANAVMEYEKIAETDFEKRDFRKVVFCMDRA-LEFAPACHRFKILKAECLAMLGRYPEAQ 196

Query:   111 SETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170
             S    +L+ D  N +AL  RG   YY    + A + F + LR+ P+H   +KA  A +N 
Sbjct:   197 SVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH---EKACIACRNA 253

Query:   171 LK-KTKSAEDNVS--KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
                K K  + N +  +G  ++A E +  AL +DPN+   N  LY     V  KL +  DA
Sbjct:   254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDA 313

Query:   228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
             +  CT A+ +++  I+A ++R +  + TE +E AV D +    Q+ +    ++ L  A+ 
Sbjct:   314 IEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKV-YQTEKTKEHKQLLKNAQL 372

Query:   288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN----VDNREEAENKFREIA 343
              LK SKRKD+YKILGV K AS  EIK+AY+K AL  HPD++     + ++E E KF+E+ 
Sbjct:   373 ELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVG 432

Query:   344 AAYEVLGDDDKRARYDRGEDIEE 366
              A+ +L D  K+ RYD G+D++E
Sbjct:   433 EAFTILSDPKKKTRYDSGQDLDE 455

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1S0P4 DNAJC7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 441 (160.3 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 121/383 (31%), Positives = 189/383 (49%)

Query:     4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKA--RNSVAEKELSQL-LQAQSTFD 60
             + EAL D   ++  D +    +   G     L    A  R+     EL     QAQ  F 
Sbjct:    78 FREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFK 137

Query:    61 SALKL----------YDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAI 110
             +A  +          ++  ++ K +  +D+  L F+PAC                Y  A 
Sbjct:   138 NANAVIEYEKIAETDFEKRDFRKVVFCMDRA-LEFAPACHRFKILKAECLAMLGRYPEAQ 196

Query:   111 SETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170
             S    +L+ D  N +AL  RG   YY    + A + F + LR+ P+H   +KA  A +N 
Sbjct:   197 SVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH---EKACIACRNA 253

Query:   171 LK-KTKSAEDNVS--KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
                K K  + N +  +G  ++A E +  AL +DPN+   N  LY     V  KL +  DA
Sbjct:   254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDA 313

Query:   228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
             +  CT A+ +++  I+A ++R +  + TE +E AV D +    Q+ +    ++ L  A+ 
Sbjct:   314 IEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKV-YQTEKTKEHKQLLKNAQL 372

Query:   288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN----VDNREEAENKFREIA 343
              LK SKRKD+YKILGV K AS  EIK+AY+K AL  HPD++     + ++E E KF+E+ 
Sbjct:   373 ELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVG 432

Query:   344 AAYEVLGDDDKRARYDRGEDIEE 366
              A+ +L D  K+ RYD G+D++E
Sbjct:   433 EAFTILSDPKKKTRYDSGQDLDE 455

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023179001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (467 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032542001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (895 aa)			•	•		•			0.836
	GSVIVG00006855001	SubName- Full=Chromosome undetermined scaffold_178, whole genome shotgun sequence; (899 aa)			•	•		•			0.834
	GSVIVG00006252001	SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (392 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	8e-40
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-38
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-37
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-31
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	9e-31
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	3e-29
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-28
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-28
pfam00226	63	pfam00226, DnaJ, DnaJ domain	1e-27
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	5e-27
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	6e-27
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-26
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-26
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	5e-26
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	5e-26
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	7e-26
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	7e-26
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-25
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	7e-25
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-24
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-23
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	6e-23
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-22
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-22
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	6e-22
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-21
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-21
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	4e-20
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	6e-20
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	6e-19
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	9e-18
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-17
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	3e-17
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	3e-16
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-14
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	7e-13
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	1e-11
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	2e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-07
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	5e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-06
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	8e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	1e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-04
PTZ00100	116	PTZ00100, PTZ00100, DnaJ chaperone protein; Provis	8e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.001
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.002

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  145 bits (368), Expect = 8e-40
 Identities = 59/107 (55%), Positives = 72/107 (67%), Gaps = 2/107 (1%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M+KR D+Y+ILGVSK AS  EIK+AY+KLA ++HPD+N  + +EAE KF+EI  AYEVL 
Sbjct: 1   MAKR-DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLS 58

Query: 351 DDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGG 397
           D +KRA YD+         G GGF FGG G  F   FE  F GG GG
Sbjct: 59  DPEKRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGGGGGG 105

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  141 bits (359), Expect = 2e-38
 Identities = 59/115 (51%), Positives = 74/115 (64%), Gaps = 6/115 (5%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M+KR D+Y++LGVS+ AS  EIK+AY+KLA+++HPD+N  + +EAE KF+EI  AYEVL 
Sbjct: 1   MAKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLS 58

Query: 351 DDDKRARYDR-GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGG 404
           D  KRA YD+ G    E G GGGGF   GGG  F   F   F   FGG  G    
Sbjct: 59  DPQKRAAYDQYGHAAFEQGGGGGGF---GGGGGFGDIFGDIFGDIFGGGRGGGRQ 110

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  138 bits (350), Expect = 2e-37
 Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 3/107 (2%)

Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D+Y+ILGVSK AS  EIK+AY+KLA ++HPD+N D  +EAE KF+EI  AYEVL D +KR
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKR 58

Query: 356 ARYDR-GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGF 401
           A+YD+ G      G GGGG  F G    F   F   F   FGG GG 
Sbjct: 59  AQYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGGS 105

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  123 bits (310), Expect = 2e-31
 Identities = 62/122 (50%), Positives = 82/122 (67%), Gaps = 12/122 (9%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M++++D+Y++LGVSKTA++ EIK+AY+K A+Q+HPDKN  ++ EAE KF+E A AY+VL 
Sbjct: 1   MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK-EAEEKFKEAAEAYDVLS 59

Query: 351 DDDKRARYDRGEDIEETGMGG--GGFNFGGGGQQFTFHFE------GGFPGGFGGDGGFP 402
           D DKR+RYD+       G+GG  GG  F G G      F       GG  GGFGG GGF 
Sbjct: 60  DPDKRSRYDQ---FGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFG 116

Query: 403 GG 404
           GG
Sbjct: 117 GG 118

Length = 386

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  121 bits (305), Expect = 9e-31
 Identities = 59/121 (48%), Positives = 77/121 (63%), Gaps = 10/121 (8%)

Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           ++D+Y++LGVS++A   EIK+AY+KLAL++HPDKN DN+ EAE  F+E+  AYEVL +DD
Sbjct: 2   KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK-EAEEHFKEVNEAYEVLSNDD 60

Query: 354 KRARYDRGEDIEETGMG-----GGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFGFN 408
           KR RYD+       G+G     GGG  +GGGG  F   F   F   FGG     GG  F 
Sbjct: 61  KRRRYDQ---FGHAGVGSSAASGGGPGYGGGGGDFNDIFS-AFNDMFGGGARRGGGSPFG 116

Query: 409 F 409
           F
Sbjct: 117 F 117

Length = 397

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  116 bits (293), Expect = 3e-29
 Identities = 59/113 (52%), Positives = 76/113 (67%), Gaps = 12/113 (10%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M+KR D+Y++LGVSK+AS  EIK+AY+KL+ ++HPD  ++  E A+ KF+EI+ AYEVL 
Sbjct: 1   MAKR-DYYEVLGVSKSASKDEIKKAYRKLSKKYHPD--INKEEGADEKFKEISEAYEVLS 57

Query: 351 DDDKRARYDR-GEDIEETGMGGGGFN---FGGGGQQFTFHFEGGFPGGFGGDG 399
           DD KRA+YD+ G      G GGGGF    FGGG     F FE  F   FGG G
Sbjct: 58  DDQKRAQYDQFGHAGPNQGFGGGGFGGGDFGGG-----FGFEDIFSSFFGGGG 105

Length = 376

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  114 bits (287), Expect = 2e-28
 Identities = 56/106 (52%), Positives = 68/106 (64%), Gaps = 5/106 (4%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           +D+Y +LGVS+ AS +EIKRAY+KLA + HPD N D  EEA+ KF+EI+ AYEVL D +K
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEK 60

Query: 355 RARYDRGED-IEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDG 399
           R   D G D +E  G GGGGF  G GG      FE  F GG    G
Sbjct: 61  RRIVDLGGDPLESAGGGGGGFGGGFGG--LGDVFEAFFGGGAASRG 104

Length = 378

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  114 bits (286), Expect = 3e-28
 Identities = 61/115 (53%), Positives = 73/115 (63%), Gaps = 10/115 (8%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           MS+R D+Y++LGVS+ AS  EIK+AY+KLALQ+HPD+N DN  EAE KF+E A AYEVL 
Sbjct: 1   MSQR-DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLR 58

Query: 351 DDDKRARYDR-GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGG 404
           D +KRARYDR G      G+ G G   G GG          F   FG   GF GG
Sbjct: 59  DAEKRARYDRFGHA----GVNGNG---GFGGFSSAEDIFSHFSDIFGDLFGFSGG 106

Length = 373

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  103 bits (259), Expect = 1e-27
 Identities = 39/64 (60%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D+Y+ILGV + AS  EIK+AY+KLAL++HPDKN  +   AE KF+EI  AYEVL D +KR
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGD-PAAEEKFKEINEAYEVLSDPEKR 59

Query: 356 ARYD 359
           A YD
Sbjct: 60  AIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  110 bits (276), Expect = 5e-27
 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 6/87 (6%)

Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           +KD+Y+ILGVS+ A+  EIKRAYK+L  +WHPD++ +NR+EAE KF+EI  AYEVL D  
Sbjct: 3   KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQ 62

Query: 354 KRARYDR----GEDI--EETGMGGGGF 374
           KRA YDR    GE    +ET  GGG F
Sbjct: 63  KRAMYDRFGYVGEQPPYQETESGGGFF 89

Length = 369

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  110 bits (277), Expect = 6e-27
 Identities = 51/112 (45%), Positives = 63/112 (56%), Gaps = 18/112 (16%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
            ++Y  LGVSK AS  EIK+AY+KL+ ++HPD N +    AE K++E+  AYE L D  K
Sbjct: 4   TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQK 61

Query: 355 RARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFG 406
           RA YD+       G  GG   FGGG   F         GGF G GGF GGF 
Sbjct: 62  RAAYDQ---YGAAGANGG---FGGGAGGF---------GGFDGSGGF-GGFE 97

Length = 380

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  109 bits (274), Expect = 2e-26
 Identities = 59/116 (50%), Positives = 72/116 (62%), Gaps = 10/116 (8%)

Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D+Y ILGVSKTAS  EIK+AY+KLA+++HPDKN  +  EAE +F+E++ AYEVL D  KR
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKR 60

Query: 356 ARYDR-GEDIEETGMGGGGFNFGGGG----QQFTFHFEGGFPGGFGGDGGFPGGFG 406
             YDR G+D    G GG    FGG G    +     F G F G FGG G F  G  
Sbjct: 61  ESYDRYGKDGPFAGAGG----FGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLF 112

Length = 391

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  108 bits (272), Expect = 2e-26
 Identities = 54/117 (46%), Positives = 72/117 (61%), Gaps = 11/117 (9%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M+ +KD+Y+ILGV + A+  EIK+AY++LA ++HPD N  ++ EAE KF+EI  AYE+L 
Sbjct: 1   MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILS 59

Query: 351 DDDKRARYDRGED--IEETGMGGGGFN---FGGGGQQFTFH-----FEGGFPGGFGG 397
           D  KRA+YD+      +  G G GGF    FGGGG  F F      FE  F   FG 
Sbjct: 60  DPQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGT 116

Length = 386

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  107 bits (270), Expect = 5e-26
 Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 7/106 (6%)

Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D+Y+ILGVS+ A   E+KRAY++LA ++HPD N +    AE++F+EI  AYEVL D + R
Sbjct: 4   DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETR 61

Query: 356 ARYDRGEDIEETGMGG-GGFNFGGGGQQFTFHFEGGFPGGFGGDGG 400
           ARYD+     E G+ G  GF   G    F   FE  F  GFGG GG
Sbjct: 62  ARYDQ---FGEAGVSGAAGFPDMGDMGGFADIFETFF-SGFGGAGG 103

Length = 374

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  108 bits (270), Expect = 5e-26
 Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 8/120 (6%)

Query: 290 KMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVL 349
           K    KD+YK+LGV K A+ +EIK+AY+KLA ++HPD N  +  +AE +F+EI+ AY+VL
Sbjct: 4   KDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVL 62

Query: 350 GDDDKRARYDRGEDIEETGMGGGGFNFG-GGGQQFTFHFEGG--FPGGFGGDGGFPGGFG 406
            D+ KR  YD    +     G GGF  G GGG    F+F+ G  F GG  G GG  GG G
Sbjct: 63  SDEKKRKEYDEARSL----FGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGG 118

Length = 389

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  107 bits (268), Expect = 7e-26
 Identities = 56/116 (48%), Positives = 73/116 (62%), Gaps = 14/116 (12%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           KD+Y++LG+ K AS  EIK+A++KLA+++HPDKN  N+ EAE KF+EI  AY+VL D  K
Sbjct: 4   KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQK 62

Query: 355 RARYDR--GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGG--DGGFPGGFG 406
           +A+YD+    D      G GGF  GG G      F+    GGFG   D  F GGFG
Sbjct: 63  KAQYDQFGTADFN----GAGGFGSGGFGG-----FDFSDMGGFGDIFDSFFGGGFG 109

Length = 380

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  107 bits (269), Expect = 7e-26
 Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 18/134 (13%)

Query: 291 MSKR----KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAY 346
           M++R    KD+YK LGVS  AS  EIK+AY+KLA + HPD N  +   AE +F+ ++ A+
Sbjct: 1   MAQREWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAH 59

Query: 347 EVLGDDDKRARYDR----------GEDIEETGMGGGGFNFGGGGQQFTFH--FEGGFPGG 394
           +VL D  KR  YD           G    + G G GGF  GG G +F  +  F+    GG
Sbjct: 60  DVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGG 119

Query: 395 FGGDGGFPGGFGFN 408
            GG G   GG  FN
Sbjct: 120 GGGIGDLFGGL-FN 132

Length = 392

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  106 bits (265), Expect = 2e-25
 Identities = 53/118 (44%), Positives = 72/118 (61%), Gaps = 19/118 (16%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M+  +D+Y+ILG+SK AS+ +IK+AY+KLA+++HPDKN +   +AE KF+EI+ AY VL 
Sbjct: 1   MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLS 58

Query: 351 DDDKRARYDR-----------GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGG 397
           D +KRA+YDR            EDI        G +FGG G  F   F GG   G  G
Sbjct: 59  DAEKRAQYDRFGHAGIDNQYSAEDI------FRGADFGGFGDIFEMFFGGGGRRGRMG 110

Length = 377

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  104 bits (260), Expect = 7e-25
 Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 13/118 (11%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           KD+YKILGV + AS  +IK+A+++LA +WHPD +  N+ EAE KF+EI+ AYEVL D  K
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62

Query: 355 RARYDRGEDIEETGMGGGGFNFGGGGQQFTFH------FEGGFPGGFGGDGGFPGGFG 406
           R +YD+   + + G GG  FN+      FT        F   F G FG D  F  GFG
Sbjct: 63  RRQYDQTGTV-DFGAGGSNFNW----DNFTHFSDINDIFNQIFGGNFGSD--FFSGFG 113

Length = 365

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 95.0 bits (237), Expect = 2e-24
 Identities = 37/60 (61%), Positives = 49/60 (81%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
            D+Y+ILGV + AS+ EIK+AY+KLAL++HPDKN  ++EEAE KF+EI  AYEVL D +K
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  100 bits (250), Expect = 1e-23
 Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 6/97 (6%)

Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           ++D+Y+ILG+SK AS  EIK+AY+K+A+++HPDKN  N +EAE+ F+E   AYEVL DD+
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDN 60

Query: 354 KRARYDR-GEDIEETGMGGGGFN-FGGGGQQFTFHFE 388
           KRA+YDR G    E   GGGGF  F GG   F+  FE
Sbjct: 61  KRAQYDRFGHTAFE---GGGGFEGFSGGFSGFSDIFE 94

Length = 365

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 98.8 bits (246), Expect = 6e-23
 Identities = 54/111 (48%), Positives = 66/111 (59%), Gaps = 8/111 (7%)

Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D+Y++LGVS+TAS  EIK AY+KLAL++HPD+N +  + A  KF +I  AY VL D +KR
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKR 60

Query: 356 ARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFG 406
           A YDR       GM GG   FGG G      FE  F     G  GF GG G
Sbjct: 61  AHYDRFGTAPGAGMPGGDP-FGGMGFDPMDIFEQLF-----GGAGFGGGRG 105

Length = 371

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 97.1 bits (242), Expect = 2e-22
 Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 6/111 (5%)

Query: 292 SKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD 351
             ++D+Y+ILGV++ AS  EIK++Y+KLA+++HPD+N  ++ EAE  F+E A AYEVL D
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSD 59

Query: 352 DDKRARYDR--GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGG 400
             KR  YD+   E +  TG  G    F      F   FE  F  GFGG   
Sbjct: 60  PKKRGIYDQYGHEGLSGTGFSGFS-GFDDIFSSFGDIFEDFF--GFGGGRR 107

Length = 366

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 97.1 bits (242), Expect = 3e-22
 Identities = 49/121 (40%), Positives = 65/121 (53%), Gaps = 19/121 (15%)

Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           +KD+Y+ILGVS+ A+  EIK+AY++LA ++HPD N +   EAE KF+EI  AY+VL D +
Sbjct: 2   KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPE 59

Query: 354 KRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGG--------FGGDGGFPGGF 405
           KR  YD+         G   F+ G G QQ        F GG             GF   F
Sbjct: 60  KRKLYDQ--------FGHAAFS-GSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIF 110

Query: 406 G 406
           G
Sbjct: 111 G 111

Length = 382

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 88.0 bits (219), Expect = 6e-22
 Identities = 36/56 (64%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD 351
           D+Y ILGV   AS  EIK+AY+KLAL++HPDKN D+  EAE KF+EI  AYEVL D
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 95.7 bits (238), Expect = 1e-21
 Identities = 51/124 (41%), Positives = 67/124 (54%), Gaps = 13/124 (10%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M++++D+Y++LGV + A   EIK+AY+KLA ++HPD  V   E AE KF+EI+ AY VL 
Sbjct: 1   MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD--VSEEEGAEEKFKEISEAYAVLS 58

Query: 351 DDDKRARYDRGEDIEETGMGG-------GGFNFGGGGQQFTFHFEGGFPG-GFGGDGGFP 402
           DD+KR RYD+       GM G          NF    Q F F     F   GFGG     
Sbjct: 59  DDEKRQRYDQ---FGHAGMDGFSQEDIFNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHG 115

Query: 403 GGFG 406
              G
Sbjct: 116 PQRG 119

Length = 378

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 93.1 bits (231), Expect = 2e-21
 Identities = 56/122 (45%), Positives = 64/122 (52%), Gaps = 13/122 (10%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           KD+Y ILGV K AS  EIK+A+KKLA ++HPD N      AE KF+EI  AY VL D +K
Sbjct: 4   KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEK 61

Query: 355 RARYDR-GEDIEETGM------GGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFGF 407
           R  YD  G      G         GG +F G        F   F   FGG GGF GGFG 
Sbjct: 62  RRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVG---DFSDFFQQLFGGRGGF-GGFGD 117

Query: 408 NF 409
            F
Sbjct: 118 LF 119

Length = 291

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 90.8 bits (225), Expect = 4e-20
 Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 5/102 (4%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           MSKR D+Y++LGV + AS+ E+K+AY+KLA ++HPD  V+   +AE+KF+E+  AY+ L 
Sbjct: 1   MSKR-DYYEVLGVDRNASVDEVKKAYRKLARKYHPD--VNKAPDAEDKFKEVKEAYDTLS 57

Query: 351 DDDKRARYDR-GEDIEETGMGGGGF-NFGGGGQQFTFHFEGG 390
           D  K+A YD+ G      G GGGG  +FGG    F   F GG
Sbjct: 58  DPQKKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGG 99

Length = 371

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 90.4 bits (224), Expect = 6e-20
 Identities = 54/116 (46%), Positives = 69/116 (59%), Gaps = 11/116 (9%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           MS+R  +Y ILGVSK+A+  EIK AY+KLA+++HPDKN  N+ E+E KF+E   AYE+L 
Sbjct: 1   MSER-SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILR 58

Query: 351 DDDKRARYDR----GEDIEETGMGGGGFN-----FGGGGQQFTFHFEGGFPGGFGG 397
           D  KR  YD+    G +    G G G +      FG  G  F   F GG  GG GG
Sbjct: 59  DPKKRQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGG 114

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 87.4 bits (216), Expect = 6e-19
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 13/112 (11%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           +D+Y+ILGVSKTAS +++K+AY KLA Q+HPD    + ++AE KF+EI AAY+VL D+ K
Sbjct: 3   QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDEQK 60

Query: 355 RARYDR-GEDIEETGMGGGGFNFGGGGQQFTFHFE-----GGFPGGFGGDGG 400
           RA YDR G D  +          GGGG    FH +     G F   F G   
Sbjct: 61  RAAYDRFGHDAFQNQQSR-----GGGGNHGGFHPDINDIFGDFFSDFMGGSR 107

Length = 372

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 83.8 bits (207), Expect = 9e-18
 Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDD 352
           K+KD+Y++LGVSKTAS  EI++AY+KLA Q+HPD N     +A +K  EI  A +VL D 
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KSPDAHDKMVEINEAADVLLDK 59

Query: 353 DKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGF 391
           DKR +YD+       G  G   NFG     F+     GF
Sbjct: 60  DKRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGF 98

Length = 372

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 12/92 (13%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           +  Y++L +SK  + SEIK+AY+KLA++ HPDK  D       KF+EI+ AYEVL D +K
Sbjct: 28  EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEK 82

Query: 355 RARYDR-GEDIEETGMGGG------GFNFGGG 379
           R  YD  GE+  E G             FGGG
Sbjct: 83  RKIYDEYGEEGLEGGEQPADASDLFDLIFGGG 114

Length = 421

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 81.8 bits (202), Expect = 3e-17
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           KD+Y I+GV  T  +  IK AY++LA ++HPD  V    +AE +F+E+A A+EVL D+ +
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD--VSKEPDAEARFKEVAEAWEVLSDEQR 61

Query: 355 RARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGG 400
           RA YD+             F  G G       F+  F   FG    
Sbjct: 62  RAEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFGQHAR 107

Length = 306

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 77.6 bits (190), Expect = 3e-16
 Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 3/110 (2%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           MS   D+Y+ILGV   AS+ EIK+AY+KLAL++HPD+N  + + AE KF+EI  AYE+L 
Sbjct: 2   MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILS 61

Query: 351 DDDKRARYDR-GEDIEETGMGGGGFNF--GGGGQQFTFHFEGGFPGGFGG 397
           D ++RA YD+ G D    G            G  Q T  +E         
Sbjct: 62  DPERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKT 111

Length = 237

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 74.9 bits (183), Expect = 2e-14
 Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 8/85 (9%)

Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           ++D+Y++LG+ + A   EIK+A++KLA ++HPD+N     +A + F EI  A +VL +  
Sbjct: 1   KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN--KAPDAASIFAEINEANDVLSNPK 58

Query: 354 KRARYDR-GEDIEETGMGG-GGFNF 376
           KRA YD+ G D    G+     F+F
Sbjct: 59  KRANYDKYGHD----GVDREDDFDF 79

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 68.9 bits (168), Expect = 7e-13
 Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 21/115 (18%)

Query: 297 WYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRA 356
           +Y+IL V K ++   IK++Y+KLAL++HPD+N  ++ EAE KF+ I  AY VL D+ KRA
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK-EAEEKFKLINEAYGVLSDEKKRA 63

Query: 357 RYDRGEDIEETGMGGGGFNFGGGGQQ-FTFHFE--GGFPGGFGGDGGFPGGFGFN 408
            YDR         G  G N  G  Q  F+  FE  G F         F   FGF 
Sbjct: 64  LYDR--------YGKKGLNQAGASQSDFSDFFEDLGSF---------FEDAFGFG 101

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 6/76 (7%)

Query: 289 LKMSKRKDW--YKILGVSKTASISEIKRAYKKLALQWHPDK----NVDNREEAENKFREI 342
           LK+  R+ +  Y+ILG+ +  S  +IK+ Y+ L++++HPDK      + R E E K++ I
Sbjct: 90  LKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTI 149

Query: 343 AAAYEVLGDDDKRARY 358
             AY +L D  +R  Y
Sbjct: 150 TKAYGLLTDKKRRENY 165

Length = 610

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 10/69 (14%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV------DNREEAENKFREIAAAYEV 348
           +D YK+LGVS++    EIKRAY+KL  + HPDK V      +  E A+ K +EI AAYE+
Sbjct: 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYEL 259

Query: 349 LGDDDKRAR 357
           +    K+ +
Sbjct: 260 I----KKQK 264

Length = 267

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 33/303 (10%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
           + EA   ++  + ADP   +A   +G +L           +A     + +  +    + L
Sbjct: 175 FDEARALIDEVLTADPGNVDALLLKGDLLL----SLGNIELALAAYRKAIALRPNNIAVL 230

Query: 64  -----KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
                 L ++GE+ +  ++ D  +L  +P    A  LK  +    K+Y  A       LK
Sbjct: 231 LALATILIEAGEFEEAEKHAD-ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK 289

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
                L ALL  G + Y L + + A ++  + L+  P   + ++   +++  L +   A 
Sbjct: 290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
             +S             AL LDP+  A        L +  + LG  + A     +A  ++
Sbjct: 350 ATLS------------PALGLDPDDPA----ALSLLGEAYLALGDFEKAAEYLAKATELD 393

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM-------RAEKALKM 291
            E   A  Q G +KL   D   A+ DL++AAQ  P+       L+       + +KAL  
Sbjct: 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453

Query: 292 SKR 294
           +K+
Sbjct: 454 AKK 456

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 189 AVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR 248
           A+E ++ AL LDP++       Y  L     KLG+ ++AL    +AL ++ +  +A    
Sbjct: 19  ALEYYEKALELDPDNAD----AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNL 74

Query: 249 GEAKLLTEDWEGAVEDLKSAAQQSPQ 274
           G A      +E A+E  + A +  P 
Sbjct: 75  GLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 16/116 (13%)

Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184
           EALL+ G  YY L D+D A  +++K L LDP++++   AY+ L     K          G
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD---AYYNLAAAYYKL---------G 48

Query: 185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
           K   A+ED++ AL LDP+    N   Y  L     KLG+ ++AL +  +AL ++  
Sbjct: 49  KYEEALEDYEKALELDPD----NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 32/256 (12%)

Query: 87  PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRH 146
           P   +A LL +   L +  +  A++    L K+  +N       G  Y    D   A+  
Sbjct: 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487

Query: 147 FQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH 206
           F+K L ++P+       + A  NL      A  ++ +G    A++ F+  L +DP     
Sbjct: 488 FEKALSIEPDF------FPAAANL------ARIDIQEGNPDDAIQRFEKVLTIDP----K 531

Query: 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLK 266
           N+   L L  + ++ G  ++A++   +A  +N + IE  +   +  L     + A+  L 
Sbjct: 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591

Query: 267 SAAQQSPQDMNIREALMRAEKALKMSKR-----KDW-----YKILGVSKTASISEIKRAY 316
            AA  +P        L RA+ A     +     K          L +   A    + + Y
Sbjct: 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651

Query: 317 KKL------ALQWHPD 326
            K       AL+  PD
Sbjct: 652 AKAITSLKRALELKPD 667

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 98  KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
            L     DY  A+      L+ D +N +A  +   AYY L  ++ A   ++K L LDP++
Sbjct: 8   NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67

Query: 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202
           +   KAY+ L     K          GK   A+E ++ AL LDPN
Sbjct: 68  A---KAYYNLGLAYYK---------LGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 78/288 (27%), Positives = 119/288 (41%), Gaps = 18/288 (6%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGS----VLRQLCRVKARNSVAEKELSQLLQAQ 56
           +K    AL  L  A+      + A    G     +L +L         A + L     A 
Sbjct: 1   LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60

Query: 57  STFDSALKLYDSGEYTKPLEYIDKVV-LVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
                AL L   G   + LE ++K + L   P  ++A L    LL A   Y  A+     
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 116 LLKEDENNLEALLHRGR-AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174
            L  D +   A       A Y L D++ A   ++K L LDPE +EL +A  AL  LL+  
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA- 179

Query: 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234
                    G+   A+E  + AL L+P+    +    L L  + +KLG+ ++AL    +A
Sbjct: 180 --------LGRYEEALELLEKALKLNPD---DDAEALLNLGLLYLKLGKYEEALEYYEKA 228

Query: 235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL 282
           L ++ +  EAL       L    +E A+E L+ A +  P   N+  AL
Sbjct: 229 LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLAL 276

Length = 291

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 297 WYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRA 356
           +Y ILGV   A + EI   Y KLA  ++P K   N  E  +KF++I  AY++LGD DK+ 
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKK 632

Query: 357 RYDR 360
            Y++
Sbjct: 633 MYNK 636

Length = 1136

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 62  ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE 121
               Y  G+Y + LEY +K + +  P  + A             Y  A+ +    L+ D 
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE 156
           +N +A  + G AYY L  ++ A   ++K L LDP 
Sbjct: 66  DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 72/320 (22%), Positives = 111/320 (34%), Gaps = 63/320 (19%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-------- 55
           Y  A+  L  A++ DP  +EA F  G +   L    A    AEKEL + L          
Sbjct: 38  YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAA----AEKELRKALSLGYPKNQVL 93

Query: 56  ---------QSTFDSALKLY------DSGEYTKPLEY----------IDKV------VLV 84
                    Q  F   L         D     + L            ++         L 
Sbjct: 94  PLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA 153

Query: 85  FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144
             P    AKL   +L LA   +  A +    +L  D  N++ALL +G     L + ++A 
Sbjct: 154 IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAL 213

Query: 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT 204
             ++K + L P +        AL  +L         +  G+   A +   A L   PN  
Sbjct: 214 AAYRKAIALRPNNI---AVLLALATIL---------IEAGEFEEAEKHADALLKKAPNSP 261

Query: 205 AHNVHLYLGLCKVLVKLGRGK--DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV 262
             +   YL   K LV   +    DA  +  +AL    E + AL+  G ++    + E A 
Sbjct: 262 LAH---YL---KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAY 315

Query: 263 EDLKSAAQQSPQDMNIREAL 282
           + L    + +P     R  L
Sbjct: 316 QYLNQILKYAPNSHQARRLL 335

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 13/92 (14%)

Query: 262 VEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLAL 321
           + D+    +QS      RE L  A + L    R+D  K+LGV   A    IK+AY+KL  
Sbjct: 87  LRDIAFLLEQSEL----REELEEAREQLD---REDALKVLGVEIKADQDAIKKAYRKLLS 139

Query: 322 QWHPDKNVDN------REEAENKFREIAAAYE 347
           + HPDK           E+ + K +EI  AYE
Sbjct: 140 EQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171

Length = 174

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 29/215 (13%)

Query: 98  KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
           K  L    Y +AI +    L++D N+ EA    G+ Y  L D+  A++  +K L L    
Sbjct: 30  KSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK 89

Query: 158 S----ELKKAYF-------ALKNLLKKTKSAEDNVS------------KGKLRVAVEDFK 194
           +     L +AY         L  L  KT   ++  +             G+L +A + ++
Sbjct: 90  NQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYE 149

Query: 195 AALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL 254
            ALA+DP     +++  LGL ++ +   R  +A +   E L  +   ++AL+ +G+  L 
Sbjct: 150 QALAIDPR----SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205

Query: 255 TEDWEGAVEDLKSAAQQSPQDMN--IREALMRAEK 287
             + E A+   + A    P ++   +  A +  E 
Sbjct: 206 LGNIELALAAYRKAIALRPNNIAVLLALATILIEA 240

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.7 bits (101), Expect = 8e-05
 Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ------ 54
           +  Y EAL+ L  A+  DP    A                    A +   + L+      
Sbjct: 108 LGKYEEALELLEKALALDPDPDLAEALLA---LGALYELGDYEEALELYEKALELDPELN 164

Query: 55  --AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISE 112
             A++       L   G Y + LE ++K + +     ++A L    L L    Y  A+  
Sbjct: 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224

Query: 113 TGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165
               L+ D +N EAL +       L  ++ A    +K L LDP+   L  A  
Sbjct: 225 YEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALL 277

Length = 291

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 293 KRKDWYKILGVSK---TASISEIKRAYKKLALQWHPDKNVDNREEAENK-FREIAAAYEV 348
           K+ D Y +LG+SK    A   +I +A+KK   ++HPDK      +  ++ F+ I  A EV
Sbjct: 41  KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREV 100

Query: 349 LGDDDKRARYDR---GEDIEE 366
           LGD   R +YD      D+  
Sbjct: 101 LGDRKLRLQYDSNDFDADVPP 121

Length = 379

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 11/80 (13%)

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
           +N EAL + G A + L D+D A   ++K L LDP+++E   AY+ L     K     +  
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAE---AYYNLALAYLKLGKDYEE- 56

Query: 182 SKGKLRVAVEDFKAALALDP 201
                  A+ED + AL LDP
Sbjct: 57  -------ALEDLEKALELDP 69

Length = 69

>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 290 KMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD 326
            MSK +  YKIL +S TAS   I+ A+K+L L+ HPD
Sbjct: 61  PMSKSEA-YKILNISPTASKERIREAHKQLMLRNHPD 96

Length = 116

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/82 (24%), Positives = 32/82 (39%)

Query: 210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAA 269
             L L  +  KLG   +AL    +AL ++ +  +A      A      +E A+ED + A 
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 270 QQSPQDMNIREALMRAEKALKM 291
           +  P +      L  A   L  
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGK 83

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL-LTEDWEGAVED 264
            N      L   L KLG   +A+ +  +AL ++ +  EA      A L L +D+E A+ED
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 265 LKSAAQQSP 273
           L+ A +  P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY--LADHDVAQRHFQKGLRLDPEHS 158
           L   D   A       L+ D ++   L +   A YY  L + + A+  F++ L L+P + 
Sbjct: 42  LEQGDLEVAKENLDKALEHDPDD--YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99

Query: 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL 218
           ++   Y        K + A       +   A+ED            A       GLC   
Sbjct: 100 DVLNNYGTFLCQQGKYEQAM-----QQFEQAIEDPLYPQPARSLENA-------GLC--A 145

Query: 219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
           +K G    A    T AL I+ +  E+L++  E   L   ++ A   L+   Q   Q 
Sbjct: 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 36/231 (15%)

Query: 94  LLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL 153
           L+  +  LAA D   A+S    LL    ++  ALL    AY  + ++  A    ++ L L
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664

Query: 154 DPEHSELKKAYFALKNLLKKT---------------KSAEDNVSKGKLRVAVEDFKAAL- 197
            P+++E +     L    K+T               K+A     +G L +  +D+ AA+ 
Sbjct: 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724

Query: 198 ----ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL 253
               AL    ++ N    + L + L+  G   +A+ +    L  +           E  L
Sbjct: 725 AYRKALKRAPSSQNA---IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL 781

Query: 254 LTEDWEGAVEDLKSAAQQSPQDMNI-------------REALMRAEKALKM 291
             +D++ A++  ++  +++P +  +               AL  AE+ALK+
Sbjct: 782 AQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAERALKL 832

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 6/157 (3%)

Query: 48  ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYA 107
           + S+     + +  AL+ Y +G+Y + L+ +  ++    P       L   +LL A    
Sbjct: 299 KRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAK 357

Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE----LKKA 163
            AI      L  D N+    L+  +A         A R   + L  DPE       L +A
Sbjct: 358 EAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQA 417

Query: 164 YFALKNLLKKTKS-AEDNVSKGKLRVAVEDFKAALAL 199
           Y  L N  +   + AE     G+L  A+     A   
Sbjct: 418 YAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454

Length = 484

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	100.0
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
KOG1126	638	consensus DNA-binding cell division cycle control	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.94
KOG1126	638	consensus DNA-binding cell division cycle control	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.93
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.93
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.92
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.92
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.92
PRK12370	553	invasion protein regulator; Provisional	99.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK11189	296	lipoprotein NlpI; Provisional	99.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.91
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.9
KOG2003	840	consensus TPR repeat-containing protein [General f	99.89
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.89
KOG1129	478	consensus TPR repeat-containing protein [General f	99.89
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.88
PRK12370	553	invasion protein regulator; Provisional	99.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.88
KOG1125	579	consensus TPR repeat-containing protein [General f	99.88
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.88
KOG2076	895	consensus RNA polymerase III transcription factor	99.88
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.87
KOG2003	840	consensus TPR repeat-containing protein [General f	99.87
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.86
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.85
PLN02789	320	farnesyltranstransferase	99.85
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.84
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
PLN02789	320	farnesyltranstransferase	99.84
KOG1125	579	consensus TPR repeat-containing protein [General f	99.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.83
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.83
KOG1129	478	consensus TPR repeat-containing protein [General f	99.82
PRK11189	296	lipoprotein NlpI; Provisional	99.81
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.8
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.8
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.79
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.79
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.79
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.78
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.78
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.76
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.76
KOG0553	304	consensus TPR repeat-containing protein [General f	99.75
KOG2076	895	consensus RNA polymerase III transcription factor	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.75
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.73
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.73
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.72
PRK15359	144	type III secretion system chaperone protein SscB;	99.71
PRK15359	144	type III secretion system chaperone protein SscB;	99.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.71
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.69
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.68
KOG0553	304	consensus TPR repeat-containing protein [General f	99.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.67
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.67
PLN03218	1060	maturation of RBCL 1; Provisional	99.66
PLN03218	1060	maturation of RBCL 1; Provisional	99.66
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.65
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.65
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.64
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.63
PRK14296	372	chaperone protein DnaJ; Provisional	99.63
PRK14288	369	chaperone protein DnaJ; Provisional	99.63
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.62
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.62
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.61
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.61
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.6
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.6
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.6
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.6
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.6
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.59
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.59
PRK14279	392	chaperone protein DnaJ; Provisional	99.58
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.58
PLN03077	857	Protein ECB2; Provisional	99.57
PRK14286	372	chaperone protein DnaJ; Provisional	99.57
PRK14287	371	chaperone protein DnaJ; Provisional	99.57
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.57
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.55
PRK14282	369	chaperone protein DnaJ; Provisional	99.54
PRK14297	380	chaperone protein DnaJ; Provisional	99.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.53
PRK14284	391	chaperone protein DnaJ; Provisional	99.53
PRK14298	377	chaperone protein DnaJ; Provisional	99.53
PRK14281	397	chaperone protein DnaJ; Provisional	99.52
PRK14285	365	chaperone protein DnaJ; Provisional	99.52
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.52
PRK14301	373	chaperone protein DnaJ; Provisional	99.52
PRK14295	389	chaperone protein DnaJ; Provisional	99.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.52
PRK14277	386	chaperone protein DnaJ; Provisional	99.51
PRK10767	371	chaperone protein DnaJ; Provisional	99.5
PRK14299	291	chaperone protein DnaJ; Provisional	99.5
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.5
PRK14276	380	chaperone protein DnaJ; Provisional	99.49
PRK14289	386	chaperone protein DnaJ; Provisional	99.49
PLN03077	857	Protein ECB2; Provisional	99.49
PRK14278	378	chaperone protein DnaJ; Provisional	99.49
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.49
PRK14280	376	chaperone protein DnaJ; Provisional	99.48
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.48
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.47
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.46
PRK14294	366	chaperone protein DnaJ; Provisional	99.46
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.46
PRK14283	378	chaperone protein DnaJ; Provisional	99.45
PRK14290	365	chaperone protein DnaJ; Provisional	99.45
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.45
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.45
KOG4234	271	consensus TPR repeat-containing protein [General f	99.45
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.45
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.44
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.44
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.44
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.43
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.43
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.43
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.43
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.42
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.42
PRK14291	382	chaperone protein DnaJ; Provisional	99.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.41
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.4
PRK14292	371	chaperone protein DnaJ; Provisional	99.39
PRK04841	903	transcriptional regulator MalT; Provisional	99.39
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.38
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PRK14300	372	chaperone protein DnaJ; Provisional	99.36
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.34
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.3
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.3
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.3
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.3
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.29
PRK14293	374	chaperone protein DnaJ; Provisional	99.29
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.29
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.28
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.28
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.28
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.27
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.26
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.24
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.23
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.23
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.23
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.22
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.21
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.21
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.2
PRK11906	458	transcriptional regulator; Provisional	99.2
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.2
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.2
PRK04841	903	transcriptional regulator MalT; Provisional	99.19
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.19
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.19
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.18
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.18
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.18
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.18
PRK11906	458	transcriptional regulator; Provisional	99.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.16
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.15
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.15
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.14
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.14
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.14
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.14
PRK15331	165	chaperone protein SicA; Provisional	99.14
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.13
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.13
PRK10803	263	tol-pal system protein YbgF; Provisional	99.12
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.12
PHA03102	153	Small T antigen; Reviewed	99.11
PRK15331	165	chaperone protein SicA; Provisional	99.11
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.1
PRK10803	263	tol-pal system protein YbgF; Provisional	99.09
KOG4234	271	consensus TPR repeat-containing protein [General f	99.06
PF12688	120	TPR_5: Tetratrico peptide repeat	99.04
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.0
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.0
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.98
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.97
PF13512	142	TPR_18: Tetratricopeptide repeat	98.96
PF13512	142	TPR_18: Tetratricopeptide repeat	98.96
PF13371	73	TPR_9: Tetratricopeptide repeat	98.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.94
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.92
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.91
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.9
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.9
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.9
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.88
PRK05014	171	hscB co-chaperone HscB; Provisional	98.87
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	98.87
PF12688	120	TPR_5: Tetratrico peptide repeat	98.85
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.85
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	98.84
PF13371	73	TPR_9: Tetratricopeptide repeat	98.83
PRK01356	166	hscB co-chaperone HscB; Provisional	98.83
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.83
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.83
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.8
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.78
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.77
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	98.75
KOG4555	175	consensus TPR repeat-containing protein [Function	98.75
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.74
KOG4555	175	consensus TPR repeat-containing protein [Function	98.74
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.74
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.72
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.72
PRK00294	173	hscB co-chaperone HscB; Provisional	98.7
PRK03578	176	hscB co-chaperone HscB; Provisional	98.69
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.68
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.67
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.66
KOG1586	288	consensus Protein required for fusion of vesicles	98.66
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.66
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.65
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.65
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.64
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.63
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	98.62
PTZ00100	116	DnaJ chaperone protein; Provisional	98.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.58
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.57
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.57
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.56
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.53
PHA02624	647	large T antigen; Provisional	98.51
KOG2471	696	consensus TPR repeat-containing protein [General f	98.49
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.45
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.44
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.41
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.38
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.36
KOG1586	288	consensus Protein required for fusion of vesicles	98.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.34
PF13428	44	TPR_14: Tetratricopeptide repeat	98.3
KOG1585	308	consensus Protein required for fusion of vesicles	98.28
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.27
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.26
KOG2471	696	consensus TPR repeat-containing protein [General f	98.25
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.25
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.24
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.23
PF13431	34	TPR_17: Tetratricopeptide repeat	98.23
PF13431	34	TPR_17: Tetratricopeptide repeat	98.18
PF13428	44	TPR_14: Tetratricopeptide repeat	98.18
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.16
PRK01773	173	hscB co-chaperone HscB; Provisional	98.15
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.12
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.11
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.11
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.08
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.08
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.06
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.02
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.01
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.01
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.0
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.93
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.93
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.89
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.85
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.84
KOG1585	308	consensus Protein required for fusion of vesicles	97.82
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.79
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.78
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.75
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.68
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.66
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.63
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.62
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.61
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.56
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	97.55
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.52
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.5
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.5
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.49
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.48
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.46
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.45
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.41
PRK10941	269	hypothetical protein; Provisional	97.4
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.4
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.38
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.35
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.31
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.31
KOG3364	149	consensus Membrane protein involved in organellar	97.24
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.24
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.22
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.22
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.21
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.2
KOG1258	577	consensus mRNA processing protein [RNA processing	97.2
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.19
KOG1310	758	consensus WD40 repeat protein [General function pr	97.15
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.15
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.07
PRK10941	269	hypothetical protein; Provisional	97.07
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.06
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.05
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.04
PTZ00009	653	heat shock 70 kDa protein; Provisional	97.0
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.99
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.96
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.93
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.88
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.87
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.86
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.84
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.83
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.81
KOG1463	411	consensus 26S proteasome regulatory complex, subun	96.78
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.76
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.76
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.75
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.65
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.64
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.62
KOG1258	577	consensus mRNA processing protein [RNA processing	96.6
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.58
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.55
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.55
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.54
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.5
KOG1310	758	consensus WD40 repeat protein [General function pr	96.49
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.48
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.47
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.46
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.41
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.41
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.4
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.34
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.26
KOG2422	665	consensus Uncharacterized conserved protein [Funct	96.21
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.16
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.14
KOG3364	149	consensus Membrane protein involved in organellar	96.11
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.06
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.05
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.04
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.04
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.95
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.93
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.86
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.84
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.84
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.73
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.66
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.65
COG2912	269	Uncharacterized conserved protein [Function unknow	95.64
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.6
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	95.58
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.49
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.48
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.48
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.46
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.45
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.41
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.39
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.33
KOG2422	665	consensus Uncharacterized conserved protein [Funct	95.3
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.25
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	95.14
COG2912	269	Uncharacterized conserved protein [Function unknow	95.0
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.99
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.97
PRK12798	421	chemotaxis protein; Reviewed	94.81
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.8
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.75
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.69
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.57
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.55
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.36
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.36
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.28
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.22
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	94.19
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.95
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.77
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.75
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.65
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.59
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.55
KOG3783	546	consensus Uncharacterized conserved protein [Funct	93.4
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.32
KOG0431	453	consensus Auxilin-like protein and related protein	93.25
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.2
COG4941	415	Predicted RNA polymerase sigma factor containing a	93.12
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.05
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	93.03
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.93
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.92
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	92.69
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	92.61
PTZ00009	653	heat shock 70 kDa protein; Provisional	92.59
COG4907	595	Predicted membrane protein [Function unknown]	92.58
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.36
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	92.33
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.25
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.18
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.08
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	92.01
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.8
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.67
COG5159	421	RPN6 26S proteasome regulatory complex component [	91.44
COG3947	361	Response regulator containing CheY-like receiver a	91.37
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.21
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.94
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.72
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	90.63
PRK11619	644	lytic murein transglycosylase; Provisional	90.41
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	90.33
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.78
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	89.26
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.19
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	88.92
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	88.79
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	88.66
COG3947	361	Response regulator containing CheY-like receiver a	88.45
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.07
COG4907	595	Predicted membrane protein [Function unknown]	88.0
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	87.81
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	86.58
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.5
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.46
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	86.17
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.03
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	85.65
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	85.64
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.59
TIGR03362	301	VI_chp_7 type VI secretion-associated protein, VC_	85.5
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.95
PF12854	34	PPR_1: PPR repeat	84.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	84.88
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	84.42
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	84.31
PHA02537	230	M terminase endonuclease subunit; Provisional	84.18
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	83.19
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	83.08
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	83.02
COG3014	449	Uncharacterized protein conserved in bacteria [Fun	82.95
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	81.77
KOG1463	411	consensus 26S proteasome regulatory complex, subun	81.56
PF12854	34	PPR_1: PPR repeat	81.54
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.44
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	81.13
smart00299	140	CLH Clathrin heavy chain repeat homology.	80.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.52

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=100.00  E-value=1.7e-62  Score=403.84  Aligned_cols=401  Identities=29%  Similarity=0.407  Sum_probs=358.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----------------HHHHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----------------QAQSTFDSALK   64 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----------------~~~~~~~~a~~   64 (409)
                      +|+-.-|+..++++|++.|++..+...+|.+++++|.+++|...+...+...+                ...........
T Consensus        85 mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s  164 (504)
T KOG0624|consen   85 MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS  164 (504)
T ss_pred             hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence            46667788888888888888888888888888888999999888877766321                12233445666


Q ss_pred             HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837           65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus        65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      ++..|++..|+..++. +++..|.++..+..++.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++
T Consensus       165 ~~~~GD~~~ai~~i~~-llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  165 ASGSGDCQNAIEMITH-LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             HhcCCchhhHHHHHHH-HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence            7788999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                      ..++.||+++|++..|...|..+..+...+..++..+..++|.++++..+++++.+|..+.........++.|+...+++
T Consensus       244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~  323 (504)
T KOG0624|consen  244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF  323 (504)
T ss_pred             HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence            99999999999999999999999999999999999999999999999999999999986655667778899999999999


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhccc
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVS  304 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  304 (409)
                      .+|+..|.++|..+|++..+++.+|.+|+-...|+.|+..|++|.+.++++..+++.+.+++...+++.+.|||++|||.
T Consensus       324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVk  403 (504)
T KOG0624|consen  324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVK  403 (504)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhccCCCCCCC--chHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcccccCCCCCCCCCCCCCC
Q 043837          305 KTASISEIKRAYKKLALQWHPDKNVD--NREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQ  382 (409)
Q Consensus       305 ~~~~~~e~~~~y~~~a~~~~~d~~~~--~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  382 (409)
                      ++++..||.++||++|.+||||..++  +++.|+++|-+|..|-|+|+||++|.+||+|+||-+|..+.||++  |++++
T Consensus       404 RnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~Es~q~GGG--g~~Hg  481 (504)
T KOG0624|consen  404 RNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDPESQQGGGG--GPFHG  481 (504)
T ss_pred             ccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCChhhccCCCC--CCCCC
Confidence            99999999999999999999998554  579999999999999999999999999999999999875433211  11122


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCC
Q 043837          383 FTFHFEGGFPGGFGGDGGFPGGFGFNF  409 (409)
Q Consensus       383 ~~~~~~gg~~gg~~~~gg~~g~~~~~f  409 (409)
                      |    .. +.|+.||+||+||+|+|||
T Consensus       482 f----~n-~hgF~~F~~Gg~~~~~F~F  503 (504)
T KOG0624|consen  482 F----WN-EHGFNPFGGGGPFQFKFHF  503 (504)
T ss_pred             C----cc-ccCCCCCCCCCCCCccccc
Confidence            2    11 4566677788889999998

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-56  Score=375.81  Aligned_cols=402  Identities=42%  Similarity=0.603  Sum_probs=348.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHhC
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-------------QLLQAQSTFDSALKLYDS   68 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------------~~~~~~~~~~~a~~~~~~   68 (409)
                      .+|.+|+..|..||+..|+++..|..++.++..++++++|...++..+.             ...........|...++.
T Consensus        63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~  142 (486)
T KOG0550|consen   63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS  142 (486)
T ss_pred             hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence            4689999999999999999999999999999999999999777765543             222333444445555544


Q ss_pred             CC---chHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837           69 GE---YTKPLEYIDKVVLVFS--PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        69 ~~---~~~A~~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  143 (409)
                      .+   -..|+..+++++....  |....+....+.|+...+++++|+..--.++++++.+.++++..|.+++...+.+.|
T Consensus       143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka  222 (486)
T KOG0550|consen  143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA  222 (486)
T ss_pred             hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence            33   2233444444232222  555678888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR  223 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~  223 (409)
                      +.+|+++|.++|++.....+......+......++.+++.|+|.+|.++|..+|.++|++...++.+|.++|.+...+|+
T Consensus       223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr  302 (486)
T KOG0550|consen  223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR  302 (486)
T ss_pred             HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence            99999999999999998888999999999999999999999999999999999999999988899999999999999999


Q ss_pred             hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcc
Q 043837          224 GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGV  303 (409)
Q Consensus       224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  303 (409)
                      ..+|+..|+.+++++|....++..+|.|+..+++|++|+++|+++++...+ .+++..+..+...++++++++||++||+
T Consensus       303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi  381 (486)
T KOG0550|consen  303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGI  381 (486)
T ss_pred             chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhh
Confidence            999999999999999999999999999999999999999999999999877 8999999999999999999999999999


Q ss_pred             cccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcccccCCCCCCCCC----CC
Q 043837          304 SKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFG----GG  379 (409)
Q Consensus       304 ~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~~~~~~~~g~~~~----~~  379 (409)
                      ...++..+|+++|+++++.||||++...++++|.+|+++.+||.+|+||.+|.+||+|.|.++.+++++|+.+.    .+
T Consensus       382 ~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~~~a~~dp~~~~~a~  461 (486)
T KOG0550|consen  382 SRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGSGGAGFDPFNIFRAF  461 (486)
T ss_pred             hhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcCCCcCcChhhhhhhc
Confidence            99999999999999999999999999889999999999999999999999999999999999988877777632    22


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 043837          380 GQQFTFHFEGGFPGGFGGDGGFPGGFGFNF  409 (409)
Q Consensus       380 ~~~~~~~~~gg~~gg~~~~gg~~g~~~~~f  409 (409)
                      +.+..|+    |||||++.++++| |.|.|
T Consensus       462 qa~~~f~----f~gg~~~n~~g~g-~~f~f  486 (486)
T KOG0550|consen  462 QALVQFG----FPGGFSENSSGFG-FIFQF  486 (486)
T ss_pred             ccceEEe----ccCCCCCCCCCcc-cccCC
Confidence            2233343    4444444333333 55655

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-36  Score=267.25  Aligned_cols=272  Identities=19%  Similarity=0.210  Sum_probs=260.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |+...||..|+++++++|+++++|+++|.+|-..+.+++|+..|.+++.. +..+...-+.|..|+++|..+-||..|++
T Consensus       232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr  311 (966)
T KOG4626|consen  232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR  311 (966)
T ss_pred             chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999884 45566777888999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       +++.+|+.+.++.++|..+...|+..+|..+|.+++.+.|+.+++.++||.+|..++.+++|...|.++++..|.... 
T Consensus       312 -al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa-  389 (966)
T KOG4626|consen  312 -ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA-  389 (966)
T ss_pred             -HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh-
Confidence             999999999999999999999999999999999999999999999999999999999999999999999999999888 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                        ++.+++.++...         |++++|+.+|++++++.|.    .+.++.++|.+|..+|+...|+.+|.+||.++|.
T Consensus       390 --a~nNLa~i~kqq---------gnl~~Ai~~YkealrI~P~----fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt  454 (966)
T KOG4626|consen  390 --AHNNLASIYKQQ---------GNLDDAIMCYKEALRIKPT----FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT  454 (966)
T ss_pred             --hhhhHHHHHHhc---------ccHHHHHHHHHHHHhcCch----HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence              999999999998         9999999999999999999    8889999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      .++++.++|.+|...|+..+|+..|+.++++.|+.+++.-.+..+...+.
T Consensus       455 ~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc  504 (966)
T KOG4626|consen  455 FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC  504 (966)
T ss_pred             HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999888887776554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-35  Score=263.10  Aligned_cols=309  Identities=20%  Similarity=0.192  Sum_probs=249.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |+.+.|.++|..+|+++|+...++..+|.++-..|+..+|...|.+++... .-+..+-+.+..+..+|+...||..|++
T Consensus       164 ~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~e  243 (966)
T KOG4626|consen  164 GDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEE  243 (966)
T ss_pred             CCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHH
Confidence            567788888888888888888888888888888888888888888887743 3456666777788888888888888888


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       +++++|+..++|+++|.+|...+.++.|+.+|.+++.+.|+++.++-++|.+|+.+|..+-|+.+|+++++++|+.++ 
T Consensus       244 -AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~-  321 (966)
T KOG4626|consen  244 -AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD-  321 (966)
T ss_pred             -hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH-
Confidence             888888888888888888888888888888888888888888888888888888888888888888888888888888 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                        ++.+++..+..+         |+..+|+.+|.+++.++|+    .+.+.++||.++.+++.+++|...|.++++..|.
T Consensus       322 --Ay~NlanALkd~---------G~V~ea~~cYnkaL~l~p~----hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~  386 (966)
T KOG4626|consen  322 --AYNNLANALKDK---------GSVTEAVDCYNKALRLCPN----HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE  386 (966)
T ss_pred             --HHhHHHHHHHhc---------cchHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh
Confidence              888888888888         8888888888888888888    5668888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchh---------------hhhhhhcc-c
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRK---------------DWYKILGV-S  304 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---------------~~~~~l~~-~  304 (409)
                      .+.++.++|.+|..+|++++|+.+|++++++.|...++...++..++.+......               +.+..|+. .
T Consensus       387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY  466 (966)
T ss_pred             hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence            8888888888888888888888888888888888877777766666655543321               22222222 1


Q ss_pred             -ccCCHHHHHHHHHHHHhccCCCCC
Q 043837          305 -KTASISEIKRAYKKLALQWHPDKN  328 (409)
Q Consensus       305 -~~~~~~e~~~~y~~~a~~~~~d~~  328 (409)
                       ......+...+|+. +++..||..
T Consensus       467 kDsGni~~AI~sY~~-aLklkPDfp  490 (966)
T KOG4626|consen  467 KDSGNIPEAIQSYRT-ALKLKPDFP  490 (966)
T ss_pred             hccCCcHHHHHHHHH-HHccCCCCc
Confidence             22346888899987 788888863

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=3.5e-28  Score=235.45  Aligned_cols=259  Identities=19%  Similarity=0.223  Sum_probs=221.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--------------H--HHH--------
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--------------L--QAQ--------   56 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------------~--~~~--------   56 (409)
                      +|++++|+..++++++++|++..+++.+|.+|..+|++++|+..+...+...              .  ...        
T Consensus       173 l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~  252 (615)
T TIGR00990       173 LGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILE  252 (615)
T ss_pred             hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999999999999999876554332100              0  000        


Q ss_pred             -------------HH---------------------------HHHHHHH---HhCCCchHHHHHHHHHHHhh---CCCcH
Q 043837           57 -------------ST---------------------------FDSALKL---YDSGEYTKPLEYIDKVVLVF---SPACS   90 (409)
Q Consensus        57 -------------~~---------------------------~~~a~~~---~~~~~~~~A~~~~~~~~~~~---~p~~~   90 (409)
                                   ..                           ...+...   ...++|++|+..|++ ++..   .|...
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~-al~~~~~~~~~a  331 (615)
T TIGR00990       253 TKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK-ALDLGKLGEKEA  331 (615)
T ss_pred             cCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH-HHhcCCCChhhH
Confidence                         00                           0000000   112578899999988 6654   57788


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      .++..+|.++..+|++++|+..|+++++++|++..+|+.+|.++..+|++++|+..|++++..+|++..   ++..++.+
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~lg~~  408 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---IYYHRAQL  408 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999998   89999999


Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  250 (409)
                      +...         |++++|+.+|+++++++|+    +..++.++|.++..+|++++|+..|++++...|+++.++..+|.
T Consensus       409 ~~~~---------g~~~~A~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~  475 (615)
T TIGR00990       409 HFIK---------GEFAQAGKDYQKSIDLDPD----FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE  475 (615)
T ss_pred             HHHc---------CCHHHHHHHHHHHHHcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9888         9999999999999999999    67789999999999999999999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          251 AKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       251 ~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      ++..+|++++|+..|++++++.|++.
T Consensus       476 ~~~~~g~~~~A~~~~~~Al~l~p~~~  501 (615)
T TIGR00990       476 LLLDQNKFDEAIEKFDTAIELEKETK  501 (615)
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999998753

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=5.1e-28  Score=233.66  Aligned_cols=336  Identities=14%  Similarity=0.088  Sum_probs=201.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |++++|+..+..++...|+++.++..++.+....|++++|+..+.+.+.. +.....+...+..+...|++++|+..|++
T Consensus        56 g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~  135 (656)
T PRK15174         56 DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ  135 (656)
T ss_pred             CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56666777777777777777777777776666677777776666666663 23344556666666666777777777766


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       ++..+|.++.++..++.++...|++++|+..+.+++...|+++.++..++ .+...|++++|+..+++++..+|.....
T Consensus       136 -Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~  213 (656)
T PRK15174        136 -AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQE  213 (656)
T ss_pred             -HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence             66666666666666777777777777777766666666666666555443 3556666666666666666665432221


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhH----HHHHHHHHHh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKD----ALSSCTEALN  236 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~  236 (409)
                        ....++.++...         |++++|+..+.+++...|+    ...++.++|.++...|++++    |+..|+++++
T Consensus       214 --~~~~l~~~l~~~---------g~~~eA~~~~~~al~~~p~----~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        214 --SAGLAVDTLCAV---------GKYQEAIQTGESALARGLD----GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             --HHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence              223333444433         6666666666666666665    44566666666666666654    5666666666


Q ss_pred             cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchh--hhhhhhc------------
Q 043837          237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRK--DWYKILG------------  302 (409)
Q Consensus       237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~------------  302 (409)
                      ++|+++.++..+|.++...|++++|+..++++++++|+++.+...+..+....+.....  .+-.++.            
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~  358 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA  358 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            66666666666666666666666666666666666666665555555444333322210  0111111            


Q ss_pred             ---ccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837          303 ---VSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARY  358 (409)
Q Consensus       303 ---~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~  358 (409)
                         +......++....|++ +...+|+..+...   ......+.++++.++.++++..+
T Consensus       359 a~al~~~G~~deA~~~l~~-al~~~P~~~~~~~---~ea~~~~~~~~~~~~~~~~~~~W  413 (656)
T PRK15174        359 AAALLQAGKTSEAESVFEH-YIQARASHLPQSF---EEGLLALDGQISAVNLPPERLDW  413 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHH-HHHhChhhchhhH---HHHHHHHHHHHHhcCCccchhhH
Confidence               1222346777777777 5556677654433   34556777888888888776333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=7.2e-28  Score=233.23  Aligned_cols=266  Identities=19%  Similarity=0.161  Sum_probs=238.7

Q ss_pred             CChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHH
Q 043837            2 KHYSEALDDLNTAIEA---DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEY   77 (409)
Q Consensus         2 g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~   77 (409)
                      ++|++|+..|+++++.   .|....++..+|.++..+|++++|+..+.+++... .....++..+..+...|++++|+..
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~  387 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED  387 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4789999999999986   47888999999999999999999999999998854 3466778899999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837           78 IDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH  157 (409)
Q Consensus        78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  157 (409)
                      |++ ++..+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|++++...|++
T Consensus       388 ~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       388 FDK-ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc--hHHHHHHHHHHH-HHcCChhHHHHHHHHH
Q 043837          158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--NVHLYLGLCKVL-VKLGRGKDALSSCTEA  234 (409)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~la~~~-~~~~~~~~A~~~~~~a  234 (409)
                      +.   ++..++.++...         |++++|+..|++++.+.|.+...  +...+.+.+.++ ...+++++|+..|+++
T Consensus       467 ~~---~~~~lg~~~~~~---------g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA  534 (615)
T TIGR00990       467 PD---VYNYYGELLLDQ---------NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA  534 (615)
T ss_pred             hH---HHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            98   888999998887         99999999999999999874321  122233444444 4479999999999999


Q ss_pred             HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837          235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRE  280 (409)
Q Consensus       235 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  280 (409)
                      +.++|++..++..+|.++..+|++++|+.+|++++++.+...+...
T Consensus       535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~  580 (615)
T TIGR00990       535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ  580 (615)
T ss_pred             HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999999999999999999999999999999887665433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.97  E-value=1.9e-27  Score=197.12  Aligned_cols=289  Identities=19%  Similarity=0.240  Sum_probs=240.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |++..|+..|-.+++.||++..+++.+|.+|+.+|+-..|+..+.+.+.. +.-.....+++..++++|++++|..-|+.
T Consensus        52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~  131 (504)
T KOG0624|consen   52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ  131 (504)
T ss_pred             hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999884 44456778899999999999999999999


Q ss_pred             HHHhhCCCc---HHHH------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837           81 VVLVFSPAC---SKAK------------LLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        81 ~~~~~~p~~---~~~~------------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  145 (409)
                       ++..+|.+   .+++            ......+...|++..|++....+|++.|-++..+..++.||...|+...||.
T Consensus       132 -vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~  210 (504)
T KOG0624|consen  132 -VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIH  210 (504)
T ss_pred             -HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHH
Confidence             88888843   2222            2234455667899999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH---------HHHH
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL---------GLCK  216 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~---------~la~  216 (409)
                      .++.+-++..++.+   .++.++.++...         |+.+.++...+++++++|++.. ....|-         .-+.
T Consensus       211 Dlk~askLs~DnTe---~~ykis~L~Y~v---------gd~~~sL~~iRECLKldpdHK~-Cf~~YKklkKv~K~les~e  277 (504)
T KOG0624|consen  211 DLKQASKLSQDNTE---GHYKISQLLYTV---------GDAENSLKEIRECLKLDPDHKL-CFPFYKKLKKVVKSLESAE  277 (504)
T ss_pred             HHHHHHhccccchH---HHHHHHHHHHhh---------hhHHHHHHHHHHHHccCcchhh-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999   999999999988         9999999999999999999764 111121         1234


Q ss_pred             HHHHcCChhHHHHHHHHHHhcChhcHHH----HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837          217 VLVKLGRGKDALSSCTEALNINEELIEA----LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS  292 (409)
Q Consensus       217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  292 (409)
                      .....++|.++++..+++++.+|..+.+    ...+..|+..-+++.+|+....+++.++|++.++.-..+.++..-...
T Consensus       278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y  357 (504)
T KOG0624|consen  278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY  357 (504)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence            4567889999999999999999985543    345778899999999999999999999999988776666666544443


Q ss_pred             ch--hhhhhhhccc
Q 043837          293 KR--KDWYKILGVS  304 (409)
Q Consensus       293 ~~--~~~~~~l~~~  304 (409)
                      ..  .+|-+.+.+.
T Consensus       358 D~AI~dye~A~e~n  371 (504)
T KOG0624|consen  358 DDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHHHHHHhcC
Confidence            32  3444444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=3.3e-27  Score=242.81  Aligned_cols=275  Identities=19%  Similarity=0.115  Sum_probs=209.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH---------------HHHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA---------------QSTFDSALKL   65 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~a~~~   65 (409)
                      .|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.+++...+..               ......+..+
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999988743211               1123456778


Q ss_pred             HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-------------
Q 043837           66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR-------------  132 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-------------  132 (409)
                      +..|++++|+..|++ ++..+|.++.++..+|.++...|++++|+..|+++++++|++..++..++.             
T Consensus       362 ~~~g~~~eA~~~~~~-Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~  440 (1157)
T PRK11447        362 LKANNLAQAERLYQQ-ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF  440 (1157)
T ss_pred             HHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence            899999999999999 889999999999999999999999999999999999999998876655444             


Q ss_pred             -----------------------------HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhc
Q 043837          133 -----------------------------AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK  183 (409)
Q Consensus       133 -----------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  183 (409)
                                                   ++...|++++|+..|+++++++|++..   ++..++.++...         
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~---~~~~LA~~~~~~---------  508 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW---LTYRLAQDLRQA---------  508 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc---------
Confidence                                         344678999999999999999999988   788888888777         


Q ss_pred             CCHHHHHHHHHHHHccCCCCccc---------------------------------------------------------
Q 043837          184 GKLRVAVEDFKAALALDPNHTAH---------------------------------------------------------  206 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~---------------------------------------------------------  206 (409)
                      |++++|+..++++++..|+++..                                                         
T Consensus       509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            88888888888888877764310                                                         


Q ss_pred             -------------hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          207 -------------NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       207 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                                   +..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++++++..|
T Consensus       589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p  668 (1157)
T PRK11447        589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN  668 (1157)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence                         1123344555555555666666666666666666666666666666666666666666665555555


Q ss_pred             CcHHHHHHHHHHHHH
Q 043837          274 QDMNIREALMRAEKA  288 (409)
Q Consensus       274 ~~~~~~~~l~~~~~~  288 (409)
                      ++..+...+..+...
T Consensus       669 ~~~~~~~~la~~~~~  683 (1157)
T PRK11447        669 DSLNTQRRVALAWAA  683 (1157)
T ss_pred             CChHHHHHHHHHHHh
Confidence            555555555444443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=1.3e-26  Score=223.85  Aligned_cols=257  Identities=16%  Similarity=0.106  Sum_probs=172.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHH----------------
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALK----------------   64 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~----------------   64 (409)
                      |++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++.. +.....+...+..                
T Consensus        90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~  169 (656)
T PRK15174         90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART  169 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            56666666666666666666666666666666666666666666555552 2222233333333                


Q ss_pred             -----------------HHhCCCchHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 043837           65 -----------------LYDSGEYTKPLEYIDKVVLVFSP-ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEA  126 (409)
Q Consensus        65 -----------------~~~~~~~~~A~~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  126 (409)
                                       ++..|++++|+..+++ ++..+| ........++.++...|++++|+..+++++..+|+++.+
T Consensus       170 ~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~-~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~  248 (656)
T PRK15174        170 QAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA-LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL  248 (656)
T ss_pred             HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence                             4445555555555554 344433 222333445666667777777777777777777777777


Q ss_pred             HHHHHHHHHhcCChHH----HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          127 LLHRGRAYYYLADHDV----AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      +..+|.++...|++++    |+..|++++.++|++..   ++..++.++...         |++++|+..+++++.++|+
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~---------g~~~eA~~~l~~al~l~P~  316 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---IVTLYADALIRT---------GQNEKAIPLLQQSLATHPD  316 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC
Confidence            7777777777777764    67777777777777776   677777776666         7777777777777777777


Q ss_pred             CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          203 HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       203 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                          +..++.++|.++...|++++|+..|++++..+|+++..+..+|.++...|++++|+..|+++++..|++
T Consensus       317 ----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        317 ----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence                556777777777777777777777777777777777666667777777777777777777777777764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=8e-28  Score=215.90  Aligned_cols=273  Identities=17%  Similarity=0.174  Sum_probs=241.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH---HHHHHHHHHHhCCCchHHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ---STFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      +..+|+..|.+.-...++..-++..+|++|+.+++|++|...+...-...+-..   ..|.-.+=++   +-+-++.++-
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~La  410 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSYLA  410 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHHHH
Confidence            457899999997778888888999999999999999999988887655322111   1111111111   2234555555


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      +-++..+|+.+..|..+|.||.-+++++.|+++|+++++++|.+..+|..+|.-+..+.+++.|..+|++||..+|.+..
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence            55788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                         +|+-+|.+|...         ++++.|.-+|++|++++|.    +..+...+|.++.++|+.++|+..+++|+.++|
T Consensus       491 ---AwYGlG~vy~Kq---------ek~e~Ae~~fqkA~~INP~----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  491 ---AWYGLGTVYLKQ---------EKLEFAEFHFQKAVEINPS----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP  554 (638)
T ss_pred             ---HHHhhhhheecc---------chhhHHHHHHHhhhcCCcc----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence               999999999888         9999999999999999999    777999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR  294 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  294 (409)
                      .++-..+.+|.+++.++++++|+..+++..++.|++..+...+++++..+++...
T Consensus       555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~  609 (638)
T KOG1126|consen  555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL  609 (638)
T ss_pred             CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence            9999999999999999999999999999999999999999999999998876443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=4.3e-25  Score=203.39  Aligned_cols=266  Identities=18%  Similarity=0.152  Sum_probs=236.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHhCCCchHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-----LQAQSTFDSALKLYDSGEYTKPLE   76 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~A~~   76 (409)
                      |++++|+..|.++++.+|+++.++..+|.++...|++++|+..+...+...     .........+..+...|++++|+.
T Consensus        49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  128 (389)
T PRK11788         49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE  128 (389)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            789999999999999999999999999999999999999999998877632     123456778999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE-----ALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      .|.+ ++..+|.+..++..++.++...|++++|++.++++++..|.+..     .+..+|.++...+++++|+..+++++
T Consensus       129 ~~~~-~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  207 (389)
T PRK11788        129 LFLQ-LVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL  207 (389)
T ss_pred             HHHH-HHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999 78888999999999999999999999999999999998887532     56689999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      +.+|++..   .+..++.++...         |++++|+..+++++..+|.+   ...++..++.+|...|++++|+..+
T Consensus       208 ~~~p~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~l  272 (389)
T PRK11788        208 AADPQCVR---ASILLGDLALAQ---------GDYAAAIEALERVEEQDPEY---LSEVLPKLMECYQALGDEAEGLEFL  272 (389)
T ss_pred             hHCcCCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHChhh---HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999877   788888888777         99999999999999998873   3567889999999999999999999


Q ss_pred             HHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       232 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                      +++++..|+... +..++.++...|++++|+..++++++..|++..+...+..
T Consensus       273 ~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~  324 (389)
T PRK11788        273 RRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY  324 (389)
T ss_pred             HHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            999999997754 4889999999999999999999999999998766544443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=2.4e-24  Score=219.59  Aligned_cols=270  Identities=23%  Similarity=0.261  Sum_probs=202.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH----------------------------
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL----------------------------   52 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------------------------   52 (409)
                      .|++++|+..++++++.+|+++.+++.+|.++...|++++|...+.+.+...                            
T Consensus        35 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~  114 (899)
T TIGR02917        35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELP  114 (899)
T ss_pred             cCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhc
Confidence            3789999999999999999999999999999999999999988887766421                            


Q ss_pred             --------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 043837           53 --------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL  124 (409)
Q Consensus        53 --------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  124 (409)
                              ......+..+..+...|++++|+..|++ ++..+|.++.++..+|.++...|++++|+..++++++.+|.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  193 (899)
T TIGR02917       115 GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ-ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV  193 (899)
T ss_pred             ccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence                    1123334556666667777777777777 6677777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837          125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT  204 (409)
Q Consensus       125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  204 (409)
                      .++..+|.++...|++++|+..|++++..+|++..   .+..++.++...         |++++|...++++++..|+  
T Consensus       194 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~~~~~~~~~---------g~~~~A~~~~~~~~~~~~~--  259 (899)
T TIGR02917       194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNPA---VLLALATILIEA---------GEFEEAEKHADALLKKAPN--  259 (899)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC--
Confidence            77777777777777777777777777777777766   666666666555         7777777777777777776  


Q ss_pred             cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          205 AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       205 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                        ....++..+.++...|++++|+..++++++.+|++..++..+|.++..+|++++|+..++++++..|++..+...+..
T Consensus       260 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  337 (899)
T TIGR02917       260 --SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS  337 (899)
T ss_pred             --CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence              444666677777777777777777777777777777777777777777777777777777777777777666555554


Q ss_pred             HHH
Q 043837          285 AEK  287 (409)
Q Consensus       285 ~~~  287 (409)
                      +..
T Consensus       338 ~~~  340 (899)
T TIGR02917       338 IQL  340 (899)
T ss_pred             HHH
Confidence            443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-25  Score=193.53  Aligned_cols=209  Identities=21%  Similarity=0.255  Sum_probs=140.1

Q ss_pred             HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837           66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  145 (409)
                      +-.|++-.|-..++. ++.++|.....|+.+|.+|....+.++-...|.++.+++|+++++|+.+|.+++-++++++|+.
T Consensus       337 fL~g~~~~a~~d~~~-~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDA-AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhcCCchhhhhhHHH-HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            344666666666666 6666666666677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK  225 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~  225 (409)
                      .|++++.++|++.-   .+..++.+....         ++++++...|+.+++..|+    .++++...|.++..+++++
T Consensus       416 DF~Kai~L~pe~~~---~~iQl~~a~Yr~---------~k~~~~m~~Fee~kkkFP~----~~Evy~~fAeiLtDqqqFd  479 (606)
T KOG0547|consen  416 DFQKAISLDPENAY---AYIQLCCALYRQ---------HKIAESMKTFEEAKKKFPN----CPEVYNLFAEILTDQQQFD  479 (606)
T ss_pred             HHHHHhhcChhhhH---HHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHhhHHhHH
Confidence            77777777777666   666666666555         6677777777777777776    5556777777777777777


Q ss_pred             HHHHHHHHHHhcChh------cHHHHHHHHHHHH-hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          226 DALSSCTEALNINEE------LIEALVQRGEAKL-LTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       226 ~A~~~~~~al~~~p~------~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      +|++.|++++++.|.      ++..+...|.+.. -.+++..|+..+++|++++|....+...++.++....+
T Consensus       480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~  552 (606)
T KOG0547|consen  480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK  552 (606)
T ss_pred             HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence            777777777777666      4555555444332 23666777777777777777766666666666555444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=5.6e-25  Score=224.26  Aligned_cols=275  Identities=21%  Similarity=0.176  Sum_probs=236.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++++|+..+++++...|.++.++..++.++...|++++|+..+.+.+... ......+..+..+...|++++|+..|.
T Consensus       580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  659 (899)
T TIGR02917       580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK  659 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999998887743 345567778888889999999999998


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      + ++..+|++..++..++.++...|++++|+..++.+.+..|.++..+..+|.++...|++++|+..|++++...|++. 
T Consensus       660 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-  737 (899)
T TIGR02917       660 R-ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-  737 (899)
T ss_pred             H-HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch-
Confidence            8 88889999999999999999999999999999999999999999999999999999999999999999999888873 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                         .+..++.++...         |++++|+..++++++..|+    +..++..+|.++...|++++|+..|+++++.+|
T Consensus       738 ---~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  801 (899)
T TIGR02917       738 ---NAIKLHRALLAS---------GNTAEAVKTLEAWLKTHPN----DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP  801 (899)
T ss_pred             ---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence               567777777777         8888888888888888888    667888888888888888888888888888888


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR  294 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  294 (409)
                      +++.++..++.++...|+ .+|+..+++++++.|+++.+...++.+....++...
T Consensus       802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  855 (899)
T TIGR02917       802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR  855 (899)
T ss_pred             CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence            888888888888888888 778888888888888888887777777665554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=5.3e-25  Score=226.56  Aligned_cols=259  Identities=17%  Similarity=0.109  Sum_probs=216.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-HH-----------------------
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-AQ-----------------------   56 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~-----------------------   56 (409)
                      .|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...+. ..                       
T Consensus       364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~  443 (1157)
T PRK11447        364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS  443 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            378999999999999999999999999999999999999999888887752111 00                       


Q ss_pred             -------------------HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 043837           57 -------------------STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLL  117 (409)
Q Consensus        57 -------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  117 (409)
                                         ....++..+...|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..+++++
T Consensus       444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~-Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al  522 (1157)
T PRK11447        444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ-RLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA  522 (1157)
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                               112244556677889999999988 888889998899999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc----------------------------------------cCCCc
Q 043837          118 KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR----------------------------------------LDPEH  157 (409)
Q Consensus       118 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------------------------------------~~p~~  157 (409)
                      +.+|+++.+++.++..+...+++++|+..++++..                                        ..|.+
T Consensus       523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~  602 (1157)
T PRK11447        523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS  602 (1157)
T ss_pred             HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence            88898888888888888888888888877766432                                        12333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      ..   .+..++.+         +...|++++|+..|+++++.+|+    +..++..++.++...|++++|+..++++++.
T Consensus       603 ~~---~~~~La~~---------~~~~g~~~~A~~~y~~al~~~P~----~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~  666 (1157)
T PRK11447        603 TR---IDLTLADW---------AQQRGDYAAARAAYQRVLTREPG----NADARLGLIEVDIAQGDLAAARAQLAKLPAT  666 (1157)
T ss_pred             ch---HHHHHHHH---------HHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            32   33334444         44559999999999999999999    7789999999999999999999999999999


Q ss_pred             ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          238 NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       238 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      .|+++.++..+|.++..+|++++|++.|++++...|+++
T Consensus       667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~  705 (1157)
T PRK11447        667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP  705 (1157)
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence            999999999999999999999999999999999887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=1.4e-24  Score=214.63  Aligned_cols=264  Identities=14%  Similarity=0.075  Sum_probs=235.5

Q ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837            6 EALDDLNTAIEADPT--LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL   83 (409)
Q Consensus         6 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   83 (409)
                      .+...+.+++..+|.  ++.+|+.+|.|+.. +++.+|+..+.+.+...+.....+..+..+...|++++|+..+.+ +.
T Consensus       459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk-a~  536 (987)
T PRK09782        459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQK-IS  536 (987)
T ss_pred             hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHH-Hh
Confidence            355666667777788  99999999999998 899999998888888766655666677788899999999999998 66


Q ss_pred             hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837           84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA  163 (409)
Q Consensus        84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  163 (409)
                      ...|. ...++.+|.++...|++++|+.+|+++++.+|.+...+..++......|++++|+..+++++.++|+ ..   .
T Consensus       537 ~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~---a  611 (987)
T PRK09782        537 LHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN---A  611 (987)
T ss_pred             ccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH---H
Confidence            55554 4567899999999999999999999999999999888888888888889999999999999999996 66   8


Q ss_pred             HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837          164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE  243 (409)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  243 (409)
                      +..++.++...         |++++|+..|++++.++|+    +..++.++|.++...|++++|+..|+++++++|+++.
T Consensus       612 ~~~LA~~l~~l---------G~~deA~~~l~~AL~l~Pd----~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~  678 (987)
T PRK09782        612 YVARATIYRQR---------HNVPAAVSDLRAALELEPN----NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA  678 (987)
T ss_pred             HHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            89999998888         9999999999999999999    7789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      ++.++|.++..+|++++|+..|+++++++|++..+...+..+....
T Consensus       679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR  724 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence            9999999999999999999999999999999988887766655433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-24  Score=186.45  Aligned_cols=301  Identities=17%  Similarity=0.155  Sum_probs=225.8

Q ss_pred             hHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHH-HHHHHHhCCCchHHHHHHHHH
Q 043837            4 YSEALDDLNTAIEA-DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD-SALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         4 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      .++++..+...+.. -|.+.-.-...|.+...+.++++|+..++......+--..... ....++-. +-...+.++...
T Consensus       243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~-~~~skLs~LA~~  321 (559)
T KOG1155|consen  243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK-NDKSKLSYLAQN  321 (559)
T ss_pred             HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH-hhhHHHHHHHHH
Confidence            45566666666665 5666666666677777777777777777666554222111111 11111111 122333333333


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      +..++.--++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+..  
T Consensus       322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR--  399 (559)
T KOG1155|consen  322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR--  399 (559)
T ss_pred             HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH--
Confidence            555566666667778888888999999999999999999999999999999999999999999999999999999988  


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                       +|+.+|+.|..+         +-..=|+-+|++|+.+-|+    +..+|..+|.||.++++.++|+++|.+++.....+
T Consensus       400 -AWYGLGQaYeim---------~Mh~YaLyYfqkA~~~kPn----DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  400 -AWYGLGQAYEIM---------KMHFYALYYFQKALELKPN----DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             -HHhhhhHHHHHh---------cchHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence             999999999998         8889999999999999999    67799999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHH
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ-------SPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKR  314 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~  314 (409)
                      ..++..+|.+|.++++.++|..+|++.++.       .|+-..+...|+.-....+..++..+|-.+.+.-+...+|.+.
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~  545 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA  545 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence            999999999999999999999999999984       3444455555555555555555666665554444444555555


Q ss_pred             HHHHHHh
Q 043837          315 AYKKLAL  321 (409)
Q Consensus       315 ~y~~~a~  321 (409)
                      -.|.+..
T Consensus       546 LlReir~  552 (559)
T KOG1155|consen  546 LLREIRK  552 (559)
T ss_pred             HHHHHHH
Confidence            5555433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.8e-25  Score=200.95  Aligned_cols=261  Identities=16%  Similarity=0.168  Sum_probs=237.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      |.+|++|..+|+.+-...|-..+..-....+++.+.+--+--..+...+. .....+.|...+.++--+++++.||++|.
T Consensus       366 l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~  445 (638)
T KOG1126|consen  366 LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFK  445 (638)
T ss_pred             HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHH
Confidence            46799999999999999998887777778888888774432233333333 23456788888999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      + +++++|....+|..+|.-+....++++|..+|+++|..+|.+..+|+.+|.+|.++++++.|.-+|++|+.++|.+..
T Consensus       446 R-AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv  524 (638)
T KOG1126|consen  446 R-AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV  524 (638)
T ss_pred             H-hhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                         ....++.++..+         |+.++|+.+|++|+.++|.    ++...+..+.++..++++++|+..+++.-++-|
T Consensus       525 ---i~~~~g~~~~~~---------k~~d~AL~~~~~A~~ld~k----n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP  588 (638)
T KOG1126|consen  525 ---ILCHIGRIQHQL---------KRKDKALQLYEKAIHLDPK----NPLCKYHRASILFSLGRYVEALQELEELKELVP  588 (638)
T ss_pred             ---HHhhhhHHHHHh---------hhhhHHHHHHHHHHhcCCC----CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence               899999999999         9999999999999999999    666999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI  278 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  278 (409)
                      ++..+++.+|.+|..+|+.+.|+..|.-|+.++|.-.++
T Consensus       589 ~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i  627 (638)
T KOG1126|consen  589 QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI  627 (638)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence            999999999999999999999999999999999986553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=2.5e-24  Score=212.83  Aligned_cols=267  Identities=13%  Similarity=-0.013  Sum_probs=242.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      +++.+|+..+.+++...|++. .+..+|.++...|++++|+..+.+.+.........+..+..+...|++++|+.++.+ 
T Consensus       490 ~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q-  567 (987)
T PRK09782        490 TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ-  567 (987)
T ss_pred             CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence            467889999999999999865 467778888999999999999998776544455577888999999999999999999 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      ++..+|.....+..++......|++++|+..|+++++++|+ +.++..+|.++..+|++++|+..|++++.++|++..  
T Consensus       568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~--  644 (987)
T PRK09782        568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN--  644 (987)
T ss_pred             HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--
Confidence            88889998888888887778889999999999999999996 999999999999999999999999999999999998  


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                       ++.+++.++...         |++++|+..|++++++.|+    ++.++.++|.++..+|++++|+..|+++++++|++
T Consensus       645 -a~~nLG~aL~~~---------G~~eeAi~~l~~AL~l~P~----~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        645 -YQAALGYALWDS---------GDIAQSREMLERAHKGLPD----DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             -HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence             999999999888         9999999999999999999    77899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                      ..+....|.+.....++..|.+.+++...++|+.. +......+...
T Consensus       711 a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~  756 (987)
T PRK09782        711 ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTA  756 (987)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhh
Confidence            99999999999999999999999999999999977 55555554443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.4e-24  Score=184.47  Aligned_cols=169  Identities=22%  Similarity=0.286  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN  169 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~  169 (409)
                      +.++...|..++-.|++-.|...++.+|.++|.+...|..++.+|...++.++-...|.+|..++|++++   +|+..+.
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d---vYyHRgQ  402 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD---VYYHRGQ  402 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc---hhHhHHH
Confidence            5677888899999999999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                      +...+         +++++|+..|++++.++|+    ++..+..+|.+.+++++++++...|+.+++..|+.++.+...|
T Consensus       403 m~flL---------~q~e~A~aDF~Kai~L~pe----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fA  469 (606)
T KOG0547|consen  403 MRFLL---------QQYEEAIADFQKAISLDPE----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFA  469 (606)
T ss_pred             HHHHH---------HHHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            99988         9999999999999999999    7889999999999999999999999999999999999999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          250 EAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       250 ~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      .++..+++++.|++.|.+|+++.|.
T Consensus       470 eiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  470 EILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHhhHHhHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999998

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.93  E-value=6.5e-22  Score=195.31  Aligned_cols=324  Identities=13%  Similarity=0.020  Sum_probs=224.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      +|++++|+..|+++++.+|.++.++..++.++...|++++|+..+.+.+...+ ... ++..+..+...|++++|+..++
T Consensus        62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~  140 (765)
T PRK10049         62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT  140 (765)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence            46788888888888888888888888888888888888888888888877543 334 6777888888888888888888


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHH----------------------------------------------HHH
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAI----------------------------------------------SET  113 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~----------------------------------------------~~~  113 (409)
                      + ++...|+++.++..++.++...+..++|+                                              ..+
T Consensus       141 ~-al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~  219 (765)
T PRK10049        141 Q-ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY  219 (765)
T ss_pred             H-HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence            8 78888888887777777776555544333                                              333


Q ss_pred             HHHHhhCCCCHHH-------HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH-------------
Q 043837          114 GYLLKEDENNLEA-------LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK-------------  173 (409)
Q Consensus       114 ~~al~~~p~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~-------------  173 (409)
                      +.+++..|.++..       ......++...+++++|+..|+++++..|..+.....+  ++.++..             
T Consensus       220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~  297 (765)
T PRK10049        220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTE  297 (765)
T ss_pred             HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHH
Confidence            3333322222111       11111123455667777777777666543211100010  1111110             


Q ss_pred             ----------------HHHHhhHHhcCCHHHHHHHHHHHHccCCCCc----------c-chHHHHHHHHHHHHHcCChhH
Q 043837          174 ----------------TKSAEDNVSKGKLRVAVEDFKAALALDPNHT----------A-HNVHLYLGLCKVLVKLGRGKD  226 (409)
Q Consensus       174 ----------------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~-~~~~~~~~la~~~~~~~~~~~  226 (409)
                                      ...+..+++.+++++|+..++++....|...          . ....++..++.++...|++++
T Consensus       298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e  377 (765)
T PRK10049        298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ  377 (765)
T ss_pred             HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence                            0012233456999999999999999877421          1 024577899999999999999


Q ss_pred             HHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhccccc
Q 043837          227 ALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKT  306 (409)
Q Consensus       227 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  306 (409)
                      |+..+++++...|.++.++..+|.++...|++++|+..++++++++|++..+...+..+...++.               
T Consensus       378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~---------------  442 (765)
T PRK10049        378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE---------------  442 (765)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC---------------
Confidence            99999999999999999999999999999999999999999999999999987777766555443               


Q ss_pred             CCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhh
Q 043837          307 ASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR  355 (409)
Q Consensus       307 ~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~  355 (409)
                        .+++...++++.. ..||..         ..+.+.+++++---|+.|
T Consensus       443 --~~~A~~~~~~ll~-~~Pd~~---------~~~~~~~~~~~~~~~~l~  479 (765)
T PRK10049        443 --WRQMDVLTDDVVA-REPQDP---------GVQRLARARDVHHMAELR  479 (765)
T ss_pred             --HHHHHHHHHHHHH-hCCCCH---------HHHHHHHHHHhccCceEE
Confidence              6777777777444 455543         233455566555555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.8e-22  Score=175.47  Aligned_cols=223  Identities=20%  Similarity=0.277  Sum_probs=186.2

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHH
Q 043837           61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-------EALLHRGRA  133 (409)
Q Consensus        61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~  133 (409)
                      .+...++..++..|++.|.. ++.++ .+...+.+.+.+|+..+.+.+++..+.++++......       .++..+|..
T Consensus       230 lgnaaykkk~f~~a~q~y~~-a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a  307 (539)
T KOG0548|consen  230 LGNAAYKKKDFETAIQHYAK-ALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA  307 (539)
T ss_pred             HHHHHHHhhhHHHHHHHHHH-HHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence            33444556889999999998 88888 8889999999999999999999999999888654422       234456778


Q ss_pred             HHhcCChHHHHHHHHHHHccCCC--cHH-------HH-----HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPE--HSE-------LK-----KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL  199 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~--~~~-------~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  199 (409)
                      |...++++.|+.+|.+++.-..+  ...       ..     .++..--........+..++..++|..|+..|+++|..
T Consensus       308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr  387 (539)
T KOG0548|consen  308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR  387 (539)
T ss_pred             hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            88889999999999999875433  211       00     01111111233445688899999999999999999999


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      +|+    ++.+|.|+|.||.+++.+..|+..++.+++++|+...+|.+.|.++..+.+|++|.+.|+++++++|++.++.
T Consensus       388 ~P~----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  388 DPE----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             CCc----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            999    7889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 043837          280 EALMRAEKAL  289 (409)
Q Consensus       280 ~~l~~~~~~~  289 (409)
                      ..+.+|...+
T Consensus       464 ~~~~rc~~a~  473 (539)
T KOG0548|consen  464 DGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.92  E-value=1.9e-21  Score=192.06  Aligned_cols=307  Identities=14%  Similarity=0.041  Sum_probs=227.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++++|+..+.+++..+|..+.++..+|.++...|++++|...+.+.+.. +......+..+..+...+++++|+..+.
T Consensus        28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~  107 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK  107 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999886 3446667788999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHH-----------
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ-----------  148 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~-----------  148 (409)
                      + ++...|.++. +..+|.++...|++++|+..++++++.+|+++.++..++.++...+..++|+..++           
T Consensus       108 ~-~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~  185 (765)
T PRK10049        108 Q-LVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD  185 (765)
T ss_pred             H-HHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence            9 8899999999 99999999999999999999999999999999999999999887777665554444           


Q ss_pred             -----------------------------------HHHccCCCcHH----HHHHHHH-HHHHHHH---------------
Q 043837          149 -----------------------------------KGLRLDPEHSE----LKKAYFA-LKNLLKK---------------  173 (409)
Q Consensus       149 -----------------------------------~al~~~p~~~~----~~~~~~~-l~~~~~~---------------  173 (409)
                                                         .++...|.++.    ...+... ++.++..               
T Consensus       186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~  265 (765)
T PRK10049        186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA  265 (765)
T ss_pred             HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence                                               33332222211    0001110 1111100               


Q ss_pred             ----------HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---
Q 043837          174 ----------TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---  240 (409)
Q Consensus       174 ----------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---  240 (409)
                                ...+..++..+++++|+..|++++...|.++.........++.++...+++++|+..++++....|.   
T Consensus       266 ~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~  345 (765)
T PRK10049        266 EGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR  345 (765)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence                      0023345556777777777777777666532112345666666777778888888888877776652   


Q ss_pred             ------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCC
Q 043837          241 ------------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTAS  308 (409)
Q Consensus       241 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~  308 (409)
                                  ...++..++.++...|++++|+..+++++...|++..++..++.+....+.                 
T Consensus       346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~-----------------  408 (765)
T PRK10049        346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW-----------------  408 (765)
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-----------------
Confidence                        234666777788888888888888888888888887777777776665554                 


Q ss_pred             HHHHHHHHHHHHhccCCCC
Q 043837          309 ISEIKRAYKKLALQWHPDK  327 (409)
Q Consensus       309 ~~e~~~~y~~~a~~~~~d~  327 (409)
                      .++..+.+++ +...+||.
T Consensus       409 ~~~A~~~l~~-al~l~Pd~  426 (765)
T PRK10049        409 PRAAENELKK-AEVLEPRN  426 (765)
T ss_pred             HHHHHHHHHH-HHhhCCCC
Confidence            5566666665 45555665

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.7e-22  Score=174.26  Aligned_cols=269  Identities=19%  Similarity=0.159  Sum_probs=223.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      .++++|+..|+.+++.+|-..+-.-...++++-..+-.+-.-.+...... -...+..--.|.-+--.++.++|+.+|.+
T Consensus       276 rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkR  355 (559)
T KOG1155|consen  276 RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKR  355 (559)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHH
Confidence            57999999999999999977666666666665554422211111111110 00111122234445556788999999988


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       +++++|....+|..+|.-|..+++...|++.|++|++++|.+..+|+.+|.+|..++-+.=|+-+|++|+.+-|++.. 
T Consensus       356 -ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR-  433 (559)
T KOG1155|consen  356 -ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR-  433 (559)
T ss_pred             -HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH-
Confidence             999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh----
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN----  236 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----  236 (409)
                        .|..+|.+|..+         ++.++|+.+|.+++.....    +..++..+|.+|-++++..+|..+|++.++    
T Consensus       434 --lw~aLG~CY~kl---------~~~~eAiKCykrai~~~dt----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~  498 (559)
T KOG1155|consen  434 --LWVALGECYEKL---------NRLEEAIKCYKRAILLGDT----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL  498 (559)
T ss_pred             --HHHHHHHHHHHh---------ccHHHHHHHHHHHHhcccc----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence              999999999999         9999999999999999887    677999999999999999999999999998    


Q ss_pred             ---cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          237 ---INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       237 ---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                         .+|+...+...+|.-+.+.+++++|..+..+++.-++.-.+....+..+..
T Consensus       499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~  552 (559)
T KOG1155|consen  499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRK  552 (559)
T ss_pred             hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence               567778889999999999999999999999999887666666555555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.6e-22  Score=178.48  Aligned_cols=273  Identities=17%  Similarity=0.138  Sum_probs=244.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      .+|.+..+.++..++.+|-+...+...--|+..+|+..+-.-...+.+.. +..+..|+..|.-++..+++.+|..+|.+
T Consensus       258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SK  337 (611)
T KOG1173|consen  258 CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSK  337 (611)
T ss_pred             ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence            57889999999999999988877766555999999977655555555553 44578899999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       +..++|....+|...|.++...++.++|+.+|..|-++-|......+.+|.-|..+++++.|..+|.+|+.+.|.++- 
T Consensus       338 -at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl-  415 (611)
T KOG1173|consen  338 -ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL-  415 (611)
T ss_pred             -HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch-
Confidence             999999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC----CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP----NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                        ++..+|.+....         +.|.+|+.+|+.++..-+    ..+ .....+.++|.++.+++++++|+.+++++|.
T Consensus       416 --v~~Elgvvay~~---------~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  416 --VLHELGVVAYTY---------EEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             --hhhhhhheeehH---------hhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence              888888887777         999999999999995332    221 1445789999999999999999999999999


Q ss_pred             cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                      +.|.++.++..+|.+|..+|+++.|+.+|.+++.+.|++.-+...|..+...
T Consensus       484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998888877655

>PRK12370 invasion protein regulator; Provisional

Probab=99.91  E-value=3e-22  Score=190.72  Aligned_cols=226  Identities=12%  Similarity=0.006  Sum_probs=194.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV   82 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   82 (409)
                      ++++|+.+|+++++++|+++.++..+|.++..++....                        ....+++++|+..+++ +
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~------------------------~~~~~~~~~A~~~~~~-A  330 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI------------------------FDKQNAMIKAKEHAIK-A  330 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC------------------------cccchHHHHHHHHHHH-H
Confidence            36789999999999999999999999988875543110                        1123567888888888 9


Q ss_pred             HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837           83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK  162 (409)
Q Consensus        83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  162 (409)
                      ++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++.++|.+..   
T Consensus       331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~---  407 (553)
T PRK12370        331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA---  407 (553)
T ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876   


Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                      .+..++.++...         |++++|+..+++++... |+    .+.++.++|.++..+|++++|+..+.+++...|..
T Consensus       408 ~~~~~~~~~~~~---------g~~eeA~~~~~~~l~~~~p~----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~  474 (553)
T PRK12370        408 AGITKLWITYYH---------TGIDDAIRLGDELRSQHLQD----NPILLSMQVMFLSLKGKHELARKLTKEISTQEITG  474 (553)
T ss_pred             hHHHHHHHHHhc---------cCHHHHHHHHHHHHHhcccc----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence            444444444444         99999999999999875 66    56689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      ..+...++.+|...|+  +|...+++.++.
T Consensus       475 ~~~~~~l~~~~~~~g~--~a~~~l~~ll~~  502 (553)
T PRK12370        475 LIAVNLLYAEYCQNSE--RALPTIREFLES  502 (553)
T ss_pred             HHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence            9999999999998884  777777766553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.2e-21  Score=169.69  Aligned_cols=318  Identities=17%  Similarity=0.150  Sum_probs=227.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |+|+.|+.+|..+|.++|.+.-.|.++..+|..+|+|++|+....+.....+ -+..+..++..++-.|+|++|+..|.+
T Consensus        16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~   95 (539)
T KOG0548|consen   16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE   95 (539)
T ss_pred             ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999988888877433 456777888999999999999999988


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccC------------------------HHHHHHHHHHHHhhCCCC-------------
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKD------------------------YASAISETGYLLKEDENN-------------  123 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~------------------------~~~A~~~~~~al~~~p~~-------------  123 (409)
                       -++.+|++..++..++.++...-.                        .+.+.......+..+|.+             
T Consensus        96 -GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a  174 (539)
T KOG0548|consen   96 -GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA  174 (539)
T ss_pred             -HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence             888888888877777776622200                        000111111111111100             


Q ss_pred             -------------------------------------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837          124 -------------------------------------------------LEALLHRGRAYYYLADHDVAQRHFQKGLRLD  154 (409)
Q Consensus       124 -------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  154 (409)
                                                                       ....-.+|...+...+++.|+++|..++.++
T Consensus       175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~  254 (539)
T KOG0548|consen  175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA  254 (539)
T ss_pred             HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence                                                             0023456667777777777777777777766


Q ss_pred             CCcHHHHHHHHH----------------------------------HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC
Q 043837          155 PEHSELKKAYFA----------------------------------LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD  200 (409)
Q Consensus       155 p~~~~~~~~~~~----------------------------------l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  200 (409)
                       .+..   .+.+                                  |+.++..  .+..+...++++.|+.+|.+++...
T Consensus       255 -~~it---~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r--~g~a~~k~~~~~~ai~~~~kaLte~  328 (539)
T KOG0548|consen  255 -TDIT---YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR--LGNAYTKREDYEGAIKYYQKALTEH  328 (539)
T ss_pred             -hhhH---HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH--hhhhhhhHHhHHHHHHHHHHHhhhh
Confidence             3332   2222                                  2222222  2445556689999999999988643


Q ss_pred             CC--Cc--------------------cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837          201 PN--HT--------------------AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW  258 (409)
Q Consensus       201 ~~--~~--------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  258 (409)
                      .+  ..                    .....--...|..++..|+|..|+..|.++|..+|+++.+|.++|.||.+++.+
T Consensus       329 Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~  408 (539)
T KOG0548|consen  329 RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY  408 (539)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH
Confidence            22  10                    002334456699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch--hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC
Q 043837          259 EGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR--KDWYKILGVSKTASISEIKRAYKKLALQWHPDKN  328 (409)
Q Consensus       259 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~  328 (409)
                      ..|+.+.+++++++|+....+..-+.+...++....  ..|.+.|.++  .+..++...|++.....+.+..
T Consensus       409 ~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~a~~~~~~  478 (539)
T KOG0548|consen  409 PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVEAQRGDET  478 (539)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999988888888888876654  3344555444  5567777777776555444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=1.3e-20  Score=173.70  Aligned_cols=252  Identities=17%  Similarity=0.047  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc----HHHHHHHH
Q 043837           23 EAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC----SKAKLLKV   97 (409)
Q Consensus        23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~----~~~~~~~a   97 (409)
                      ...+.+|..+...|++++|+..+.+++... ......+..+..+...|++++|+..+++ ++...+..    ..++..+|
T Consensus        36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQN-LLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHH
Confidence            456677999999999999999999999853 3455678889999999999999999988 55543222    35788999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHHHHHH
Q 043837           98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL--KKAYFALKNLLKKTK  175 (409)
Q Consensus        98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~l~~~~~~~~  175 (409)
                      .++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+...  ...+..++.++... 
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-  193 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR-  193 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC-
Confidence            999999999999999999999999999999999999999999999999999999988776431  12334455554444 


Q ss_pred             HHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-HHHHHHHHHHHHh
Q 043837          176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL-IEALVQRGEAKLL  254 (409)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~  254 (409)
                              +++++|+..++++++..|+    ...++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|..
T Consensus       194 --------~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        194 --------GDLDAARALLKKALAADPQ----CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             --------CCHHHHHHHHHHHHhHCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence                    9999999999999999998    67789999999999999999999999999998876 4677889999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          255 TEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       255 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      .|++++|+..++++++..|+...+ ..+..+....
T Consensus       262 ~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~  295 (389)
T PRK11788        262 LGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQ  295 (389)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHh
Confidence            999999999999999999987544 4455544433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.91  E-value=2.3e-21  Score=169.87  Aligned_cols=212  Identities=19%  Similarity=0.156  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      +..++.++..+...|++++|+..|.+ +++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.++|.++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~-Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQ-ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44456666666777777788888877 89999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837          135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL  214 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  214 (409)
                      ...|++++|+..+++++..+|+++.. ..|..+   ....         +++++|+..+.+++...+..      .| ..
T Consensus       143 ~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l---~~~~---------~~~~~A~~~l~~~~~~~~~~------~~-~~  202 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYL---AESK---------LDPKQAKENLKQRYEKLDKE------QW-GW  202 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHH---HHcc---------CCHHHHHHHHHHHHhhCCcc------cc-HH
Confidence            99999999999999999999998731 122211   1222         88999999998877554321      12 13


Q ss_pred             HHHHHHcCChhHHHHHHHHH-------HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHH
Q 043837          215 CKVLVKLGRGKDALSSCTEA-------LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP-QDMNIREALMRAE  286 (409)
Q Consensus       215 a~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~  286 (409)
                      +.++..+|++..+ ..++.+       +++.|+.+++|+.+|.++..+|++++|+.+|+++++.+| +..+.+..+....
T Consensus       203 ~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~  281 (296)
T PRK11189        203 NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA  281 (296)
T ss_pred             HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            5666667776544 233333       356677889999999999999999999999999999996 6666665555544


Q ss_pred             HH
Q 043837          287 KA  288 (409)
Q Consensus       287 ~~  288 (409)
                      ..
T Consensus       282 ~~  283 (296)
T PRK11189        282 LL  283 (296)
T ss_pred             HH
Confidence            43

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.91  E-value=8e-24  Score=185.24  Aligned_cols=253  Identities=23%  Similarity=0.239  Sum_probs=115.8

Q ss_pred             CCChHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837            1 MKHYSEALDDLNTAIE-A-DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYI   78 (409)
Q Consensus         1 lg~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   78 (409)
                      .|++++|++++.+.+. . .|+++..|..+|.+...+++++.|...+.+.+.........+.....++..+++++|+.++
T Consensus        21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~  100 (280)
T PF13429_consen   21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLA  100 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3789999999976654 4 4889999999999999999999999999998887666666666666668899999999998


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 043837           79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED--ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE  156 (409)
Q Consensus        79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  156 (409)
                      .+ ..+.. .++..+.....++...++++++...+.++....  +.++..|..+|.++...|++++|+..++++++++|+
T Consensus       101 ~~-~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~  178 (280)
T PF13429_consen  101 EK-AYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD  178 (280)
T ss_dssp             -------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred             cc-ccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            77 44444 456777788888999999999999999987655  677889999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          157 HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      +..   ++..++.++...         |+++++...+....+..|++    +.++..+|.++..+|++++|+.++++++.
T Consensus       179 ~~~---~~~~l~~~li~~---------~~~~~~~~~l~~~~~~~~~~----~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  179 DPD---ARNALAWLLIDM---------GDYDEAREALKRLLKAAPDD----PDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             -HH---HHHHHHHHHCTT---------CHHHHHHHHHHHHHHH-HTS----CCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHC---------CChHHHHHHHHHHHHHCcCH----HHHHHHHHHHhcccccccccccccccccc
Confidence            998   777777776555         99999888888887777773    34888999999999999999999999999


Q ss_pred             cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      .+|+++..+..+|.++...|+.++|...++++++.
T Consensus       243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HSTT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999988763

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.5e-22  Score=170.89  Aligned_cols=280  Identities=20%  Similarity=0.228  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH----
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHR----  130 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----  130 (409)
                      +.....++..++++.+|.+|+..|.. ++...|.++..|.+++.+++..++|++|.-..++.++++|..+..+...    
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~-Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTF-AIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH  127 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHH-HHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence            34445555566666666666666666 6666666666666666666666666666666666666665554444444    


Q ss_pred             ------------------------------------------------HHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837          131 ------------------------------------------------GRAYYYLADHDVAQRHFQKGLRLDPEHSELKK  162 (409)
Q Consensus       131 ------------------------------------------------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  162 (409)
                                                                      +.|+..++++++|...--..+++++.+.+   
T Consensus       128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~---  204 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE---  204 (486)
T ss_pred             hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH---
Confidence                                                            44555555555555555555666666655   


Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc--------hHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--------NVHLYLGLCKVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a  234 (409)
                      +++..+.++...         .+.+.|+..|++++.++|++...        ....+...|.-.++.|++..|.++|..+
T Consensus       205 al~vrg~~~yy~---------~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  205 ALYVRGLCLYYN---------DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             HHHhcccccccc---------cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            555555555555         89999999999999999986531        3456677888899999999999999999


Q ss_pred             HhcChhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch--hhhhhhhcccccCC
Q 043837          235 LNINEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR--KDWYKILGVSKTAS  308 (409)
Q Consensus       235 l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~  308 (409)
                      |.++|++    ...|.+++.+...+|+..+|+...+.+++++|....+....+.|+..+.+...  .++-+.+..+.+  
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--  353 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--  353 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence            9999975    67789999999999999999999999999999999988888899888887665  344455555544  


Q ss_pred             HHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcC
Q 043837          309 ISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLG  350 (409)
Q Consensus       309 ~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~  350 (409)
                       -++++..+++.+.....+...    -.-.-...-.+|++||+++.
T Consensus       354 -~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~A  398 (486)
T KOG0550|consen  354 -CEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLA  398 (486)
T ss_pred             -cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHH
Confidence             344444444333222111111    00111122337999998877

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=3.7e-20  Score=159.64  Aligned_cols=270  Identities=18%  Similarity=0.156  Sum_probs=174.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhH-------------------------------------
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNS-------------------------------------   43 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-------------------------------------   43 (409)
                      +|+|+.||..|+.+++..|+...++ ++..|++..|+-++-..                                     
T Consensus       289 ~gqy~dainsfdh~m~~~pn~~a~~-nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~  367 (840)
T KOG2003|consen  289 AGQYDDAINSFDHCMEEAPNFIAAL-NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH  367 (840)
T ss_pred             cccchhhHhhHHHHHHhCccHHhhh-hhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence            4889999999999999999877655 56677777777544311                                     


Q ss_pred             ------------------------------------HHHHHHHH----HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837           44 ------------------------------------VAEKELSQ----LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL   83 (409)
Q Consensus        44 ------------------------------------~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   83 (409)
                                                          ++.+.+..    .........+|..++++|+++.|++++.- ..
T Consensus       368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv-~~  446 (840)
T KOG2003|consen  368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV-FE  446 (840)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH-HH
Confidence                                                11111111    11122235677888999999999998864 22


Q ss_pred             hhC-CCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           84 VFS-PACSKAKLLKVKLLLAA--KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        84 ~~~-p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                      ..+ .....+-.++..+++.+  .++..|..+...++.++.-++.++.+.|.+-+..|++++|.+.|+.+|.-+....+ 
T Consensus       447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-  525 (840)
T KOG2003|consen  447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-  525 (840)
T ss_pred             hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-
Confidence            222 12233344444444442  35666777777777777767777777777777777777777777777665544444 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                        ++++++..+..+         |+.++|+.+|-+...+--+    ++.+++.++.+|..+.+..+|++++.++..+-|+
T Consensus       526 --alfniglt~e~~---------~~ldeald~f~klh~il~n----n~evl~qianiye~led~aqaie~~~q~~slip~  590 (840)
T KOG2003|consen  526 --ALFNIGLTAEAL---------GNLDEALDCFLKLHAILLN----NAEVLVQIANIYELLEDPAQAIELLMQANSLIPN  590 (840)
T ss_pred             --HHHHhcccHHHh---------cCHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence              677777766666         7777777777666665555    5666777777777777777777777777777777


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                      ++.++..+|.+|-+.|+..+|.+++-......|.+.+..++|...+..
T Consensus       591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid  638 (840)
T KOG2003|consen  591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID  638 (840)
T ss_pred             CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence            777777777777777777777776666666667666666666554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.7e-20  Score=173.97  Aligned_cols=284  Identities=21%  Similarity=0.188  Sum_probs=242.9

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH----HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL----LQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      +..++..+.++...+|++|.++..++.-++..|+++.+...+..++...    ..+.+.|..|..+..+|+|++|..+|.
T Consensus       252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            5667777777777888888888888888888888888888888877754    667889999999999999999999999


Q ss_pred             HHHHhhCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHccC
Q 043837           80 KVVLVFSPAC-SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA----DHDVAQRHFQKGLRLD  154 (409)
Q Consensus        80 ~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~~  154 (409)
                      + ++..+|++ ...++.+|..++..|+++.|+.+|+++++..|++.++...+|.+|...+    ..+.|..++.+++...
T Consensus       332 ~-s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  332 E-SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             H-HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence            8 78888877 8889999999999999999999999999999999999999999998886    6789999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHH-----------------------------HHhhHHhcCCHHHHHHHHHHHHcc-----C
Q 043837          155 PEHSELKKAYFALKNLLKKTK-----------------------------SAEDNVSKGKLRVAVEDFKAALAL-----D  200 (409)
Q Consensus       155 p~~~~~~~~~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~A~~~~~~al~~-----~  200 (409)
                      |.+..   +|..++.++....                             .|...+..|++.+|...+.+++..     +
T Consensus       411 ~~d~~---a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n  487 (1018)
T KOG2002|consen  411 PVDSE---AWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN  487 (1018)
T ss_pred             cccHH---HHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence            99988   7777777665332                             233445559999999999999876     2


Q ss_pred             CCC-ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          201 PNH-TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       201 ~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      ++. ...+....+|+|.++-.+++++.|.+.|..+++.+|...+++..++......++..+|...+..++..+..+++++
T Consensus       488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar  567 (1018)
T KOG2002|consen  488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR  567 (1018)
T ss_pred             ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence            222 1124557899999999999999999999999999999999999999888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 043837          280 EALMRAEKALKM  291 (409)
Q Consensus       280 ~~l~~~~~~~~~  291 (409)
                      ..++..+.....
T Consensus       568 sl~G~~~l~k~~  579 (1018)
T KOG2002|consen  568 SLLGNLHLKKSE  579 (1018)
T ss_pred             HHHHHHHHhhhh
Confidence            999977655443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=6.1e-22  Score=163.64  Aligned_cols=239  Identities=17%  Similarity=0.142  Sum_probs=225.3

Q ss_pred             HHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC
Q 043837           26 FHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD  105 (409)
Q Consensus        26 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~  105 (409)
                      ..+|+||+++|-+.+|...++..+...+..+...-.+..+-+..+...|+..+.+ .+...|.++..+...|+++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~-gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGE-GLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhh-hhhcCCchhhhhhhhHHHHHHHHh
Confidence            5689999999999999999999999988888899999999999999999999998 889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837          106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK  185 (409)
Q Consensus       106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (409)
                      +++|+++|+.+++.+|.+.++.-.+|.-|+.-++.+-|+.+|++.|.+--.+++   .+.+++.+...-         ++
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---Lf~NigLCC~ya---------qQ  373 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---LFCNIGLCCLYA---------QQ  373 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH---HHhhHHHHHHhh---------cc
Confidence            999999999999999999999999999999999999999999999999999998   999999999888         99


Q ss_pred             HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837          186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  265 (409)
                      ++-++..|.+++....+... .+.+|+|+|.+....|++.-|..+|+-++..++++.+++.++|.+-...|+.++|..++
T Consensus       374 ~D~~L~sf~RAlstat~~~~-aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll  452 (478)
T KOG1129|consen  374 IDLVLPSFQRALSTATQPGQ-AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL  452 (478)
T ss_pred             hhhhHHHHHHHHhhccCcch-hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence            99999999999987654333 68899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCcHHH
Q 043837          266 KSAAQQSPQDMNI  278 (409)
Q Consensus       266 ~~al~~~p~~~~~  278 (409)
                      +.+-...|+-.+.
T Consensus       453 ~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  453 NAAKSVMPDMAEV  465 (478)
T ss_pred             HHhhhhCcccccc
Confidence            9999999985443

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=5.6e-23  Score=176.66  Aligned_cols=71  Identities=56%  Similarity=0.892  Sum_probs=66.1

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcc
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIE  365 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~  365 (409)
                      ..+||++|+|+++++.+|||+|||+||++||||+++.+ ++|+++|++|++|||+|+||+||+.||++....
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~   73 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAG   73 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccc
Confidence            57899999999999999999999999999999999964 699999999999999999999999999966544

>PRK12370 invasion protein regulator; Provisional

Probab=99.88  E-value=2.2e-20  Score=177.99  Aligned_cols=202  Identities=16%  Similarity=0.048  Sum_probs=181.4

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---------DYASAISETGYLLKEDENNLEALLHRGRAYYYLAD  139 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  139 (409)
                      .++++|+.+|++ +++.+|+++.++..+|.|+...+         ++++|+..++++++++|+++.++..+|.++...|+
T Consensus       275 ~~~~~A~~~~~~-Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQ-CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            456899999998 99999999999999999887543         48999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837          140 HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV  219 (409)
Q Consensus       140 ~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~  219 (409)
                      +++|+..|+++++++|++..   ++..++.++...         |++++|+..++++++++|.    ....+..++.+++
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~---------G~~~eAi~~~~~Al~l~P~----~~~~~~~~~~~~~  417 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISAD---IKYYYGWNLFMA---------GQLEEALQTINECLKLDPT----RAAAGITKLWITY  417 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHH
Confidence            99999999999999999999   899999998888         9999999999999999999    4445566677788


Q ss_pred             HcCChhHHHHHHHHHHhcC-hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          220 KLGRGKDALSSCTEALNIN-EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       220 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      ..|++++|+..+++++... |+++.++..+|.++..+|++++|+..+.++....|.+......+...+.
T Consensus       418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC  486 (553)
T ss_pred             hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence            8999999999999999875 7889999999999999999999999999998888887777666655543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.7e-20  Score=157.67  Aligned_cols=272  Identities=18%  Similarity=0.139  Sum_probs=234.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |++++|+..|+++.-+||.+..+.-..|.++...|+++.-.......+... ..+..++..+..++..+++..|+.+-++
T Consensus       246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK  325 (564)
T KOG1174|consen  246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK  325 (564)
T ss_pred             cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            788888888888888888888888888888888888887666666666654 4566777788888899999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       ++..+|++..++...|..+...++.++|+-.|+.+..+-|...+.|..+-.+|...+++.+|.-.-+.++...|.+.. 
T Consensus       326 -~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~-  403 (564)
T KOG1174|consen  326 -CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR-  403 (564)
T ss_pred             -HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh-
Confidence             899999999999999999999999999999999999999999999999999999999999999999999999998887 


Q ss_pred             HHHHHHHH-HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          161 KKAYFALK-NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       161 ~~~~~~l~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                        .+..+| .+...        ...--++|...+++++++.|.    ...+...++.++...|.+..++..+++.+...|
T Consensus       404 --~LtL~g~~V~~~--------dp~~rEKAKkf~ek~L~~~P~----Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~  469 (564)
T KOG1174|consen  404 --SLTLFGTLVLFP--------DPRMREKAKKFAEKSLKINPI----YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP  469 (564)
T ss_pred             --hhhhhcceeecc--------CchhHHHHHHHHHhhhccCCc----cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence              666664 32221        113357899999999999999    677889999999999999999999999999887


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      + ...+..+|.++...+.+.+|.++|..|+.++|++....+.+.++++..+
T Consensus       470 D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  470 D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            5 4578899999999999999999999999999999988888887766443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=7.2e-21  Score=168.88  Aligned_cols=229  Identities=21%  Similarity=0.228  Sum_probs=190.2

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      -|..+..+++.|+..+|+-+|+. ++..+|.+.++|..||.+....++-..||..++++++++|++.+++..||.+|...
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEA-AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe  366 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEA-AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE  366 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHH-HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence            47899999999999999999988 89999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHccCCCcHHH-----------------HHHHHHHHHHHH--------------HHHHHhhHHhcCCH
Q 043837          138 ADHDVAQRHFQKGLRLDPEHSEL-----------------KKAYFALKNLLK--------------KTKSAEDNVSKGKL  186 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~~~~~-----------------~~~~~~l~~~~~--------------~~~~~~~~~~~~~~  186 (409)
                      |.-.+|+.++.+-+...|.....                 ...+..+...+.              ....+..+.-.++|
T Consensus       367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence            99999999999987644321100                 001111111111              11123333444999


Q ss_pred             HHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHH
Q 043837          187 RVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLK  266 (409)
Q Consensus       187 ~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  266 (409)
                      +.|+.+|+.||...|+    +..+|..||.++..-.+.++|+..|++|+++.|....+++++|.+++.+|.|++|+++|-
T Consensus       447 draiDcf~~AL~v~Pn----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  447 DRAVDCFEAALQVKPN----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             HHHHHHHHHHHhcCCc----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            9999999999999999    788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCc----------HHHHHHHHHHHHHHhh
Q 043837          267 SAAQQSPQD----------MNIREALMRAEKALKM  291 (409)
Q Consensus       267 ~al~~~p~~----------~~~~~~l~~~~~~~~~  291 (409)
                      .||.+.+..          ..++..|..+....+.
T Consensus       523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence            999987662          2466766655554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.88  E-value=6e-20  Score=171.69  Aligned_cols=276  Identities=16%  Similarity=0.168  Sum_probs=245.2

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH--HHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ--AQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      ++.|...|..++...|++..+++..|.+.+..++|..|+.+|..++...+.  +....-.+.++.+.++.+.|+..+.+ 
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r-  224 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER-  224 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH-
Confidence            588999999999999999999999999999999999999999998775443  44556677888999999999999999 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKD---YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      +++++|.++.++..||.+-+...+   +..++..+.++...+|.+|.++..|+.-++..++|..+......++.......
T Consensus       225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~  304 (1018)
T KOG2002|consen  225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS  304 (1018)
T ss_pred             HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence            999999999999999998876654   67899999999999999999999999999999999999999999998776655


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN  238 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  238 (409)
                      .....++.+|.++..+         |+|++|..+|.++++.+|++   ....++.+|+.++..|+++.|+.+|+++++..
T Consensus       305 ~~aes~Y~~gRs~Ha~---------Gd~ekA~~yY~~s~k~~~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~  372 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQ---------GDFEKAFKYYMESLKADNDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL  372 (1018)
T ss_pred             HHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHccCCCC---ccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence            5566789999999888         99999999999999999984   36678899999999999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhcc----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837          239 EELIEALVQRGEAKLLTE----DWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS  292 (409)
Q Consensus       239 p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  292 (409)
                      |++.++...+|.+|...+    ..+.|..++.++++..|.+.+++..++.+...-...
T Consensus       373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~  430 (1018)
T KOG2002|consen  373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW  430 (1018)
T ss_pred             cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH
Confidence            999999999999998886    678999999999999999999888888776654433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.88  E-value=5.1e-19  Score=164.51  Aligned_cols=285  Identities=16%  Similarity=0.152  Sum_probs=216.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |++++|+..+.++|..+|.++.+|..+|.+|.++|+.+++......+-. .+.+..-|...+.....+|++.+|+-+|.+
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r  232 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR  232 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            7899999999999999999999999999999999999998766544433 333446677777888888999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-----EALLHRGRAYYYLADHDVAQRHFQKGLRLDP  155 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  155 (409)
                       +++.+|.+....+.++.+|.++|+...|++.|.+++..+|...     +.....+..+...++-+.|++.++.++....
T Consensus       233 -AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~  311 (895)
T KOG2076|consen  233 -AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK  311 (895)
T ss_pred             -HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence             9999999999999999999999999999999999999999321     2334557788888888999999999888322


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhh------------------------------------------------------HH
Q 043837          156 EHSELKKAYFALKNLLKKTKSAED------------------------------------------------------NV  181 (409)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~------------------------------------------------------~~  181 (409)
                      +-... .-+..++.++........                                                      .+
T Consensus       312 ~~~~~-ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L  390 (895)
T KOG2076|consen  312 DEASL-EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL  390 (895)
T ss_pred             ccccc-cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence            11110 022223333322210000                                                      00


Q ss_pred             hcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-hcHHHHHHHHHHHHhccCHHH
Q 043837          182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE-ELIEALVQRGEAKLLTEDWEG  260 (409)
Q Consensus       182 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~  260 (409)
                      +..+..+++..+..--...|.   ..+.++..++.++...|++.+|+.++..++...+ ++..+|+.+|.||..++.+++
T Consensus       391 ~~~e~~e~ll~~l~~~n~~~~---d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~  467 (895)
T KOG2076|consen  391 KERELLEALLHFLVEDNVWVS---DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE  467 (895)
T ss_pred             cccchHHHHHHHHHHhcCChh---hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence            112222222222211111122   2577899999999999999999999999988766 457899999999999999999


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          261 AVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       261 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      |+++|++++.+.|++.+++..|..++..+..
T Consensus       468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~  498 (895)
T KOG2076|consen  468 AIEFYEKVLILAPDNLDARITLASLYQQLGN  498 (895)
T ss_pred             HHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence            9999999999999999999999998887765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.87  E-value=1.4e-19  Score=154.37  Aligned_cols=202  Identities=19%  Similarity=0.126  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      ....+..+..++..+++++|+..+++ ++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~-~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDK-ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            45556677777888888888888887 77778888888888888888888888888888888888888888888888888


Q ss_pred             HhcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837          135 YYLADHDVAQRHFQKGLRLD--PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL  212 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  212 (409)
                      ...|++++|+..+++++...  +....   .+..++.++...         |++++|+..+.+++...|+    ....+.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~----~~~~~~  173 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPAR---SLENAGLCALKA---------GDFDKAEKYLTRALQIDPQ----RPESLL  173 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcC----ChHHHH
Confidence            88888888888888888753  22333   566667666666         8888888888888888887    566788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          213 GLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       213 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                      .++.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus       174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            8888888888888888888888888787888888888888888888888888777665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.87  E-value=3.6e-19  Score=153.66  Aligned_cols=212  Identities=17%  Similarity=0.135  Sum_probs=138.8

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 043837           59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA  138 (409)
Q Consensus        59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  138 (409)
                      .+++...+..|++++|.+.|.+ ++..+.....+++++|..+..+|+.++|+++|-++-.+--++.++++.++.+|..+.
T Consensus       494 ~nkgn~~f~ngd~dka~~~yke-al~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le  572 (840)
T KOG2003|consen  494 TNKGNIAFANGDLDKAAEFYKE-ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE  572 (840)
T ss_pred             hcCCceeeecCcHHHHHHHHHH-HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            3344444555666666666666 666666666666666666666666666666666666666666666666666666666


Q ss_pred             ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHH
Q 043837          139 DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL  218 (409)
Q Consensus       139 ~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~  218 (409)
                      +..+|++++-++..+-|+++.   ++..++.+|...         |+-.+|..++-...+..|.    +.+....++..|
T Consensus       573 d~aqaie~~~q~~slip~dp~---ilskl~dlydqe---------gdksqafq~~ydsyryfp~----nie~iewl~ayy  636 (840)
T KOG2003|consen  573 DPAQAIELLMQANSLIPNDPA---ILSKLADLYDQE---------GDKSQAFQCHYDSYRYFPC----NIETIEWLAAYY  636 (840)
T ss_pred             CHHHHHHHHHHhcccCCCCHH---HHHHHHHHhhcc---------cchhhhhhhhhhcccccCc----chHHHHHHHHHH
Confidence            666666666666666666666   666666666555         6666666666666666666    555666666666


Q ss_pred             HHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      ....-+++|+.+|+++--+.|+.......++.|+...|+|.+|...|+..-...|.+.+....|.++..
T Consensus       637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~  705 (840)
T KOG2003|consen  637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence            666666677777777666666666666666677777777777777776666666666665555555443

>TIGR00540 hemY_coli hemY protein

Probab=99.87  E-value=5.6e-19  Score=162.44  Aligned_cols=274  Identities=12%  Similarity=0.011  Sum_probs=220.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH--HHHHHHHHHHhCCCchHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ--STFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      |+++.|.+.+.++.+..|+....+...|.++..+|+++.|...+.+.....+...  .....+..++..++++.|+..++
T Consensus        98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~  177 (409)
T TIGR00540        98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD  177 (409)
T ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            7899999999999999999888899999999999999999999999877555443  33445888899999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALL----HRGRAYYYLADHDVAQRHFQKGLRLDP  155 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~l~~~~~~~~~~~~A~~~~~~al~~~p  155 (409)
                      . +.+..|+++.++..++.++...|++++|++.+.+.++..+.++..+.    ....-+...+..+++...+.++....|
T Consensus       178 ~-l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p  256 (409)
T TIGR00540       178 K-LLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP  256 (409)
T ss_pred             H-HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence            8 88999999999999999999999999999999999987554444331    222222444455566678888888777


Q ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          156 ----EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       156 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                          +++.   .+..++..+...         |++++|+..++++++..|++....  ............++.+.+++.+
T Consensus       257 ~~~~~~~~---l~~~~a~~l~~~---------g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       257 RHRRHNIA---LKIALAEHLIDC---------DDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             HHHhCCHH---HHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCCcccch--hHHHHHhhhcCCCChHHHHHHH
Confidence                3555   777777777666         999999999999999999854211  1123333444567889999999


Q ss_pred             HHHHhcChhcH--HHHHHHHHHHHhccCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          232 TEALNINEELI--EALVQRGEAKLLTEDWEGAVEDLK--SAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       232 ~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      +++++.+|+++  ..+..+|++++..|+|++|.++|+  .+++..|++... ..+..+...++.
T Consensus       323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~  385 (409)
T TIGR00540       323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGD  385 (409)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCC
Confidence            99999999999  889999999999999999999999  688888987664 477777766655

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.87  E-value=1.6e-19  Score=142.76  Aligned_cols=210  Identities=20%  Similarity=0.153  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      .......+|+.++..|++..|...+++ +++.+|++..+|..+|.+|...|+.+.|-+.|+++++++|++.+++++.|..
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlek-AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEK-ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            344556677777777777777777777 7777777777777777777777777777777777777777777777777777


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                      ++.+|++++|...|++|+.. |........+.+++.|....         |+++.|..+|+++++++|+    .+.....
T Consensus       113 LC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~---------gq~~~A~~~l~raL~~dp~----~~~~~l~  178 (250)
T COG3063         113 LCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKA---------GQFDQAEEYLKRALELDPQ----FPPALLE  178 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhc---------CCchhHHHHHHHHHHhCcC----CChHHHH
Confidence            77777777777777777652 44433333666666666555         7777777777777777777    4446667


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837          214 LCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI  278 (409)
Q Consensus       214 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  278 (409)
                      ++..+++.|++..|..++++....-+-..+.+.....+-...|+-+.|-++=.+.....|...+.
T Consensus       179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         179 LARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            77777777777777777777666656666666666666666777777766666666666666554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.87  E-value=7.7e-20  Score=144.53  Aligned_cols=187  Identities=24%  Similarity=0.240  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN  169 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~  169 (409)
                      ..+++.+|.-|+..|++..|...++++|+.+|++..+|..++.+|..+|+.+.|.+.|++|++++|++.+   ++++.|.
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---VLNNYG~  111 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---VLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---hhhhhhH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                      .+...         |++++|...|++|+.. |..+. .+..+.|+|.|.++.|+++.|..+|+++++++|+.+.+...++
T Consensus       112 FLC~q---------g~~~eA~q~F~~Al~~-P~Y~~-~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a  180 (250)
T COG3063         112 FLCAQ---------GRPEEAMQQFERALAD-PAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA  180 (250)
T ss_pred             HHHhC---------CChHHHHHHHHHHHhC-CCCCC-cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence            99888         9999999999999973 33222 5679999999999999999999999999999999999999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          250 EAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       250 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      ..+++.|+|-.|..++++....-+-..+......++.+.+.
T Consensus       181 ~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g  221 (250)
T COG3063         181 RLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG  221 (250)
T ss_pred             HHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence            99999999999999999998887765555544455555554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=3.8e-18  Score=166.00  Aligned_cols=286  Identities=14%  Similarity=0.063  Sum_probs=219.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|+++.|+..|+++++.+|.++.+...++.++...|+.++|+..+++.+.. ..........|..+...|++++|+++|+
T Consensus        47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~  126 (822)
T PRK14574         47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ  126 (822)
T ss_pred             CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            389999999999999999999755558889999999999999999998832 2223444445778889999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      + +++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..+|+..+++++..+|++..
T Consensus       127 k-aL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e  204 (822)
T PRK14574        127 S-SLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEE  204 (822)
T ss_pred             H-HHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence            9 999999999999999999999999999999999999999985554 55666666677887799999999999999876


Q ss_pred             HHHHHHHHHHHHHHHH----------------------------------------------------------------
Q 043837          160 LKKAYFALKNLLKKTK----------------------------------------------------------------  175 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~----------------------------------------------------------------  175 (409)
                      .   +..+..++....                                                                
T Consensus       205 ~---~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~  281 (822)
T PRK14574        205 V---LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW  281 (822)
T ss_pred             H---HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence            2   222211111100                                                                


Q ss_pred             ---------------------------------------------------HHhhHHhcCCHHHHHHHHHHHHccCCCC-
Q 043837          176 ---------------------------------------------------SAEDNVSKGKLRVAVEDFKAALALDPNH-  203 (409)
Q Consensus       176 ---------------------------------------------------~~~~~~~~~~~~~A~~~~~~al~~~~~~-  203 (409)
                                                                         .|..++..++.++|+.+|.+++.-.|.. 
T Consensus       282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~  361 (822)
T PRK14574        282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF  361 (822)
T ss_pred             cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence                                                               1222222366777777777776644321 


Q ss_pred             c-cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---------------hhcHHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837          204 T-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN---------------EELIEALVQRGEAKLLTEDWEGAVEDLKS  267 (409)
Q Consensus       204 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~  267 (409)
                      . .........|-.+|+..+++++|..++++.....               |+..++...++.++...|++.+|.+.+++
T Consensus       362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~  441 (822)
T PRK14574        362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED  441 (822)
T ss_pred             CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            0 0023334667788888899999999998888743               34577888888888999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          268 AAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       268 al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      .+...|.|..++..++.++...+.
T Consensus       442 l~~~aP~n~~l~~~~A~v~~~Rg~  465 (822)
T PRK14574        442 LSSTAPANQNLRIALASIYLARDL  465 (822)
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcCC
Confidence            999999998888888888776665

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.86  E-value=2.2e-21  Score=169.85  Aligned_cols=255  Identities=22%  Similarity=0.228  Sum_probs=120.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH---HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHH
Q 043837           16 EADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL---LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKA   92 (409)
Q Consensus        16 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~   92 (409)
                      +..|.  ...+.+|.+++..|++++|+..+.+.+...   .....+...|......++++.|+..|++ ++..++.++..
T Consensus         4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~-l~~~~~~~~~~   80 (280)
T PF13429_consen    4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEK-LLASDKANPQD   80 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            44566  333477999999999999999997665543   3334444566677788999999999999 78888888888


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD--PEHSELKKAYFALKNL  170 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~l~~~  170 (409)
                      +..++.+ ...+++++|+..+.++.+..+ ++..+.....++...++++++...++++....  +.+..   .|..++.+
T Consensus        81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~a~~  155 (280)
T PF13429_consen   81 YERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSAR---FWLALAEI  155 (280)
T ss_dssp             ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HH---HHHHHHHH
T ss_pred             ccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHH---HHHHHHHH
Confidence            8888888 799999999999999988765 46777788888999999999999999977654  45555   78888888


Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  250 (409)
                      +...         |++++|+..|+++++++|+    +..+...++.++...|+++++...+.......|+++..+..+|.
T Consensus       156 ~~~~---------G~~~~A~~~~~~al~~~P~----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~  222 (280)
T PF13429_consen  156 YEQL---------GDPDKALRDYRKALELDPD----DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA  222 (280)
T ss_dssp             HHHC---------CHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred             HHHc---------CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            8877         9999999999999999999    67799999999999999999999999998888999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          251 AKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       251 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      ++..+|++++|+.+|+++++.+|+|+.+...++.+....++
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR  263 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred             Hhccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999988776665

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.8e-18  Score=140.62  Aligned_cols=261  Identities=16%  Similarity=0.173  Sum_probs=222.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCchHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-----LLQAQSTFDSALKLYDSGEYTKPLE   76 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~A~~   76 (409)
                      .+.++|++.|..+++.+|...++++.+|+++.+.|..+.|+..-+..+..     .......++.|..++..|-++.|..
T Consensus        49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~  128 (389)
T COG2956          49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED  128 (389)
T ss_pred             cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            46789999999999999999999999999999999999999998887763     3456677889999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN-----LEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      .|.. +......-..+.-.+..+|....+|++|++..++..++.+..     +..|..++..+....+.+.|+..+.+++
T Consensus       129 ~f~~-L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl  207 (389)
T COG2956         129 IFNQ-LVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL  207 (389)
T ss_pred             HHHH-HhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            9987 444444557788899999999999999999999999988764     3356788888888999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      +.+|++..   +-..+|.+....         |+|+.|++.++.+++.+|+.   .+.+...+..||..+|+.++.+..+
T Consensus       208 qa~~~cvR---Asi~lG~v~~~~---------g~y~~AV~~~e~v~eQn~~y---l~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         208 QADKKCVR---ASIILGRVELAK---------GDYQKAVEALERVLEQNPEY---LSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             hhCcccee---hhhhhhHHHHhc---------cchHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999887   777788887777         99999999999999999984   6778889999999999999999999


Q ss_pred             HHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       232 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      .++++..+. +.+...++..-....-.+.|..++.+-+...|+-.-..
T Consensus       273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~  319 (389)
T COG2956         273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH  319 (389)
T ss_pred             HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence            999988764 45556667777777778888999988899888854433

>PLN02789 farnesyltranstransferase

Probab=99.85  E-value=1.5e-18  Score=151.57  Aligned_cols=212  Identities=16%  Similarity=0.102  Sum_probs=174.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      +++++|+..+.++|+++|++..+|..++.++..++.                                ++++++..+++ 
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~--------------------------------~l~eeL~~~~~-   97 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA--------------------------------DLEEELDFAED-   97 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch--------------------------------hHHHHHHHHHH-
Confidence            456677777777777777777777777776654431                                35677777777 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDY--ASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ++..+|.+..+|..++.++...++.  ++++.++.++++.+|.+..+|..++.++...+++++|++++.++++.+|.+..
T Consensus        98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s  177 (320)
T PLN02789         98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS  177 (320)
T ss_pred             HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence            8899999999999999999999874  78899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEAL  235 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al  235 (409)
                         +|...+.+...+..-..  .....++++.+..++|.++|+    +..+|..++.++..    +++..+|+..+.+++
T Consensus       178 ---AW~~R~~vl~~~~~l~~--~~~~~e~el~y~~~aI~~~P~----N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~  248 (320)
T PLN02789        178 ---AWNQRYFVITRSPLLGG--LEAMRDSELKYTIDAILANPR----NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL  248 (320)
T ss_pred             ---HHHHHHHHHHhcccccc--ccccHHHHHHHHHHHHHhCCC----CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence               88888887654311000  001245788999999999999    56699999999988    456678999999999


Q ss_pred             hcChhcHHHHHHHHHHHHhc
Q 043837          236 NINEELIEALVQRGEAKLLT  255 (409)
Q Consensus       236 ~~~p~~~~~~~~la~~~~~~  255 (409)
                      ...|+++.++..++.+|...
T Consensus       249 ~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        249 SKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccCCcHHHHHHHHHHHHhh
Confidence            99999999999999999863

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.84  E-value=3.2e-18  Score=145.94  Aligned_cols=188  Identities=21%  Similarity=0.195  Sum_probs=169.1

Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL  167 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l  167 (409)
                      ..+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..   .+..+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~  105 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---VLNNY  105 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHH
Confidence            347889999999999999999999999999999999999999999999999999999999999999999887   88888


Q ss_pred             HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHH
Q 043837          168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQ  247 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  247 (409)
                      +.++...         |++++|+..+.+++...+.. . ....+..+|.++...|++++|...+.+++..+|+++.++..
T Consensus       106 ~~~~~~~---------g~~~~A~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  174 (234)
T TIGR02521       106 GTFLCQQ---------GKYEQAMQQFEQAIEDPLYP-Q-PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE  174 (234)
T ss_pred             HHHHHHc---------ccHHHHHHHHHHHHhccccc-c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence            8888777         99999999999999854321 1 56688999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          248 RGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       248 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      ++.++...|++++|+..++++++..|.++.....+..+....
T Consensus       175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (234)
T TIGR02521       175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL  216 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999888777666555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.7e-18  Score=153.33  Aligned_cols=279  Identities=20%  Similarity=0.160  Sum_probs=229.7

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH-HH-HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837           20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-QS-TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKV   97 (409)
Q Consensus        20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a   97 (409)
                      ++++.....+..+...+++.+-.......+...+-. .. .+..| +++..|+..+-..+-.+ +....|..+..|+..|
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~-LV~~yP~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHK-LVDLYPSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHH-HHHhCCCCCcchhhHH
Confidence            456777778888888888888777777776643221 11 22333 67777777766666666 7788899999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837           98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA  177 (409)
Q Consensus        98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~  177 (409)
                      ..|+..+++.+|..+|.++..++|....+|...|.++...++.++|+.+|..|-++.|....   -...+|.-+..+   
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl---P~LYlgmey~~t---  393 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL---PSLYLGMEYMRT---  393 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc---hHHHHHHHHHHh---
Confidence            99999999999999999999999999999999999999999999999999999999888766   667777777777   


Q ss_pred             hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-------hcHHHHHHHHH
Q 043837          178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE-------ELIEALVQRGE  250 (409)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~  250 (409)
                            ++++.|..+|.+|+.+.|.    .+.++..+|.+.+..+.|.+|+.+|+.++..-+       .....+.++|.
T Consensus       394 ------~n~kLAe~Ff~~A~ai~P~----Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH  463 (611)
T KOG1173|consen  394 ------NNLKLAEKFFKQALAIAPS----DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH  463 (611)
T ss_pred             ------ccHHHHHHHHHHHHhcCCC----cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence                  9999999999999999999    556999999999999999999999999994322       24567899999


Q ss_pred             HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch-h-hhhhhhcccccC-CHHHHHHHH
Q 043837          251 AKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR-K-DWYKILGVSKTA-SISEIKRAY  316 (409)
Q Consensus       251 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-~-~~~~~l~~~~~~-~~~e~~~~y  316 (409)
                      ++.+++.+++|+.++++++.+.|.+..+...++.++..++.... . -+.+.|.+.++. ...++.+..
T Consensus       464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987665 2 356788888877 445554443

>PLN02789 farnesyltranstransferase

Probab=99.84  E-value=6.9e-18  Score=147.46  Aligned_cols=206  Identities=13%  Similarity=0.039  Sum_probs=186.4

Q ss_pred             HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCh--HH
Q 043837           66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADH--DV  142 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~  142 (409)
                      ...+.+++|+..+.+ ++..+|.+..+|..++.++..++ ++++++..+.++++.+|++..+|+.++.++..+++.  ++
T Consensus        48 ~~~e~serAL~lt~~-aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         48 ASDERSPRALDLTAD-VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HcCCCCHHHHHHHHH-HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            346788999999999 99999999999999999999998 689999999999999999999999999999999874  78


Q ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-
Q 043837          143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-  221 (409)
Q Consensus       143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-  221 (409)
                      ++.++.++++.+|++..   +|...+.++..+         ++++++++++.++|+.+|.    +..+|..++.++... 
T Consensus       127 el~~~~kal~~dpkNy~---AW~~R~w~l~~l---------~~~~eeL~~~~~~I~~d~~----N~sAW~~R~~vl~~~~  190 (320)
T PLN02789        127 ELEFTRKILSLDAKNYH---AWSHRQWVLRTL---------GGWEDELEYCHQLLEEDVR----NNSAWNQRYFVITRSP  190 (320)
T ss_pred             HHHHHHHHHHhCcccHH---HHHHHHHHHHHh---------hhHHHHHHHHHHHHHHCCC----chhHHHHHHHHHHhcc
Confidence            89999999999999999   999999999988         9999999999999999999    777999999998776 


Q ss_pred             --CCh----hHHHHHHHHHHhcChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          222 --GRG----KDALSSCTEALNINEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       222 --~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                        +.+    ++++.+..++|.++|++..+|..++.++..    +++..+|++.+.+++...|++..+...|..+...
T Consensus       191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence              333    478889999999999999999999999988    4567889999999999999999888888877653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=2.3e-19  Score=159.46  Aligned_cols=242  Identities=18%  Similarity=0.155  Sum_probs=193.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |+..+|+-.|+.++..+|.++++|..||.+....++-..|+..+.+.+. ++........+|+.+...|.-.+|+.++.+
T Consensus       299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~  378 (579)
T KOG1125|consen  299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDK  378 (579)
T ss_pred             CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            5678899999999999999999999999999999998888888888888 455667778889999999988999999988


Q ss_pred             HHHhhCCCcHHHHHH-------HHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           81 VVLVFSPACSKAKLL-------KVKLLLAAKDYASAISETGYLLKEDE--NNLEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~-------~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      + +...|........       ..........+..-.+.|..+....|  .+++++..||.+|...++|++|+.+|+.||
T Consensus       379 W-i~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL  457 (579)
T KOG1125|consen  379 W-IRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL  457 (579)
T ss_pred             H-HHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence            4 4444332111110       00011122234455667777777778  688999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      ...|++..   .|..||.++..-         .+..+||..|++|+++.|.    .+.+++|+|.+++.+|.|++|+++|
T Consensus       458 ~v~Pnd~~---lWNRLGAtLAN~---------~~s~EAIsAY~rALqLqP~----yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  458 QVKPNDYL---LWNRLGATLANG---------NRSEEAISAYNRALQLQPG----YVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             hcCCchHH---HHHHhhHHhcCC---------cccHHHHHHHHHHHhcCCC----eeeeehhhhhhhhhhhhHHHHHHHH
Confidence            99999999   999999999877         8999999999999999999    7889999999999999999999999


Q ss_pred             HHHHhcChhc----------HHHHHHHHHHHHhccCHHH
Q 043837          232 TEALNINEEL----------IEALVQRGEAKLLTEDWEG  260 (409)
Q Consensus       232 ~~al~~~p~~----------~~~~~~la~~~~~~~~~~~  260 (409)
                      -.||.+.+..          ..+|..|=.++...++.+-
T Consensus       522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence            9999886541          2355554455555555553

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.83  E-value=8.5e-18  Score=151.12  Aligned_cols=267  Identities=15%  Similarity=0.032  Sum_probs=195.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      |+...|...+.++++.+|++.+.|+....+.....+++.|...+.++.........++..+.....+++.++|+.++++ 
T Consensus       598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe-  676 (913)
T KOG0495|consen  598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE-  676 (913)
T ss_pred             CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH-
Confidence            5667788888888888888888888888888888888888888877777777777777777777788899999999988 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      +++..|.....|+.+|.++.++++.+.|...|...++..|..+..|..++.+-...|....|...++++...+|++..  
T Consensus       677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~--  754 (913)
T KOG0495|consen  677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL--  754 (913)
T ss_pred             HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch--
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                       .|..........         |+.+.|.....+||+-+|++    ..+|..--...-.-++-..    ...|++....+
T Consensus       755 -lwle~Ir~ElR~---------gn~~~a~~lmakALQecp~s----g~LWaEaI~le~~~~rkTk----s~DALkkce~d  816 (913)
T KOG0495|consen  755 -LWLESIRMELRA---------GNKEQAELLMAKALQECPSS----GLLWAEAIWLEPRPQRKTK----SIDALKKCEHD  816 (913)
T ss_pred             -hHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCcc----chhHHHHHHhccCcccchH----HHHHHHhccCC
Confidence             666666666555         99999999999999999884    2233222222111222111    22222333344


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      +.+++..|.++....+++.|.++|.++++.+|++.+++..+-+.+...
T Consensus       817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~h  864 (913)
T KOG0495|consen  817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRH  864 (913)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHh
Confidence            444555555555555555555555555555555555444444444333

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.83  E-value=3.8e-17  Score=149.54  Aligned_cols=248  Identities=13%  Similarity=0.093  Sum_probs=150.1

Q ss_pred             HHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhCCCchHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHc
Q 043837           26 FHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS-ALKLYDSGEYTKPLEYIDKVVLVFSPACSK-AKLLKVKLLLAA  103 (409)
Q Consensus        26 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~-~~~~~a~~~~~~  103 (409)
                      +..|.+....|+++.|.......-.........+.. +......|+++.|..++.+ +.+.+|+... .....+.++...
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~-A~~~~~~~~~~~~l~~a~l~l~~  166 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLER-AAELADNDQLPVEITRVRIQLAR  166 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHC
Confidence            344445555555555554444333321111222222 3333555555555555555 4444444432 222335555555


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH---------------------
Q 043837          104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK---------------------  162 (409)
Q Consensus       104 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---------------------  162 (409)
                      |++++|+..++++++.+|+++.++..++.+|...|++++|+..+.+..+..+.+.....                     
T Consensus       167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~  246 (398)
T PRK10747        167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE  246 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            55555555555555555555555555555555555555555555554443332221100                     


Q ss_pred             ------------------HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          163 ------------------AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       163 ------------------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                                        ++..+         +..+...|+.++|...++++++..|+     ..+....+.  ...++.
T Consensus       247 ~l~~~w~~lp~~~~~~~~~~~~~---------A~~l~~~g~~~~A~~~L~~~l~~~~~-----~~l~~l~~~--l~~~~~  310 (398)
T PRK10747        247 GLKRWWKNQSRKTRHQVALQVAM---------AEHLIECDDHDTAQQIILDGLKRQYD-----ERLVLLIPR--LKTNNP  310 (398)
T ss_pred             HHHHHHHhCCHHHhCCHHHHHHH---------HHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHhh--ccCCCh
Confidence                              33333         33444559999999999999996554     223333333  345899


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      +++++.+++.++.+|+++..+..+|.++...++|++|.++|+++++..|++.. ...+..+.....+
T Consensus       311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~  376 (398)
T PRK10747        311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK  376 (398)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999765 3356666665554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.2e-19  Score=150.28  Aligned_cols=238  Identities=14%  Similarity=0.136  Sum_probs=217.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      ||-+.+|.+.++.+|+..| .++.+..++++|.+..+...|+..+.+.+... .+.......|..+-..+++++|+++|+
T Consensus       236 Lgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk  314 (478)
T KOG1129|consen  236 LGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK  314 (478)
T ss_pred             hcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence            5778999999999999987 47888999999999999999999999988854 445556778888889999999999998


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      . +++.+|.++++.-.+|.-|+-.++.+-|+.+|++++++.-.+++.+.++|.|++..++++-++..|.+++....+...
T Consensus       315 ~-vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~  393 (478)
T KOG1129|consen  315 L-VLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ  393 (478)
T ss_pred             H-HHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch
Confidence            8 999999999999999999999999999999999999999999999999999999999999999999999998776666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                      ...+|++++.+....         |++..|..+|+-++..+++    ..+++.|+|.+-.+.|+.++|..+++.+-.+.|
T Consensus       394 aaDvWYNlg~vaV~i---------GD~nlA~rcfrlaL~~d~~----h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  394 AADVWYNLGFVAVTI---------GDFNLAKRCFRLALTSDAQ----HGEALNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             hhhhhhccceeEEec---------cchHHHHHHHHHHhccCcc----hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            777999999998888         9999999999999999999    788999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHH
Q 043837          240 ELIEALVQRGEAKL  253 (409)
Q Consensus       240 ~~~~~~~~la~~~~  253 (409)
                      +-.+..++++.+-.
T Consensus       461 ~m~E~~~Nl~~~s~  474 (478)
T KOG1129|consen  461 DMAEVTTNLQFMSV  474 (478)
T ss_pred             cccccccceeEEee
Confidence            88877777665433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.81  E-value=1e-17  Score=146.85  Aligned_cols=232  Identities=19%  Similarity=0.142  Sum_probs=180.8

Q ss_pred             ChHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837            3 HYSEALDDLNTAIEAD---PT-LSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEY   77 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~   77 (409)
                      +.+.++..+.++|...   |. .+..|+.+|.++...|++++|...+.+++.. +.....++..|..+...|++++|+..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4678999999999743   33 4778999999999999999999999999884 44567888999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837           78 IDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH  157 (409)
Q Consensus        78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  157 (409)
                      |++ +++++|++..++.++|.++...|++++|+..++++++++|+++.....+ .+....+++++|+..+.+++...+..
T Consensus       121 ~~~-Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        121 FDS-VLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            999 8999999999999999999999999999999999999999987432222 23456788999999998877554332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHH--HHHHHHHHH----ccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRV--AVEDFKAAL----ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      ..   .+   +.+...+         +++.+  ++..+.+.+    ++.|.    ...+|+++|.++..+|++++|+.+|
T Consensus       199 ~~---~~---~~~~~~l---------g~~~~~~~~~~~~~~~~~~~~l~~~----~~ea~~~Lg~~~~~~g~~~~A~~~~  259 (296)
T PRK11189        199 QW---GW---NIVEFYL---------GKISEETLMERLKAGATDNTELAER----LCETYFYLAKYYLSLGDLDEAAALF  259 (296)
T ss_pred             cc---HH---HHHHHHc---------cCCCHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            21   11   2222223         54433  333333333    33444    6779999999999999999999999


Q ss_pred             HHHHhcCh-hcHHHHHHHHHHHHhc
Q 043837          232 TEALNINE-ELIEALVQRGEAKLLT  255 (409)
Q Consensus       232 ~~al~~~p-~~~~~~~~la~~~~~~  255 (409)
                      +++++.+| +..+..+.+..+....
T Consensus       260 ~~Al~~~~~~~~e~~~~~~e~~~~~  284 (296)
T PRK11189        260 KLALANNVYNFVEHRYALLELALLG  284 (296)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHH
Confidence            99999996 6666666555554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.80  E-value=2.6e-16  Score=141.76  Aligned_cols=257  Identities=16%  Similarity=0.133  Sum_probs=233.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQST-FDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      +.++-|...|..+|+..|.....|...+..--.-|..+.-.+.+++++...+.+... +..|......|+...|..++..
T Consensus       530 ~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~  609 (913)
T KOG0495|consen  530 PAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ  609 (913)
T ss_pred             chHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            346778899999999999999999999998888899999889999998887766554 4566777888999999999998


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       +.+.+|++.++|+....+.....+++.|...|.++....|. ..+|+.-+.....+++.++|+..++.+++..|+... 
T Consensus       610 -af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K-  686 (913)
T KOG0495|consen  610 -AFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK-  686 (913)
T ss_pred             -HHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH-
Confidence             89999999999999999999999999999999999987775 678888899999999999999999999999999888 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                        .|..+|.++..+         ++.+.|...|...++..|.    ...+|..++.+--+.|....|...++++.-.+|.
T Consensus       687 --l~lmlGQi~e~~---------~~ie~aR~aY~~G~k~cP~----~ipLWllLakleEk~~~~~rAR~ildrarlkNPk  751 (913)
T KOG0495|consen  687 --LWLMLGQIEEQM---------ENIEMAREAYLQGTKKCPN----SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK  751 (913)
T ss_pred             --HHHHHhHHHHHH---------HHHHHHHHHHHhccccCCC----CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence              999999999999         9999999999999999999    6669999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      +...|......-+..|+.+.|.....+|++-.|++.
T Consensus       752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg  787 (913)
T KOG0495|consen  752 NALLWLESIRMELRAGNKEQAELLMAKALQECPSSG  787 (913)
T ss_pred             cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence            999999999999999999999999999999888764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.7e-16  Score=135.63  Aligned_cols=268  Identities=16%  Similarity=0.067  Sum_probs=227.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 043837            6 EALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLV   84 (409)
Q Consensus         6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   84 (409)
                      .+..++-.-...-|+|...+..+|.|+...|++.+|+..+++.... +......=.-|..+-..|++++--.+-.. +..
T Consensus       216 ~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~-Lf~  294 (564)
T KOG1174|consen  216 SQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY-LFA  294 (564)
T ss_pred             hhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH-HHh
Confidence            3455566666778999999999999999999999999999888763 33444444456667778898887777766 677


Q ss_pred             hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837           85 FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY  164 (409)
Q Consensus        85 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  164 (409)
                      .......-|+.-+...+..+++..|+.+-+++|+.+|.+..++...|.++...++.++|+-.|+.|..+.|-...   .|
T Consensus       295 ~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---~Y  371 (564)
T KOG1174|consen  295 KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---IY  371 (564)
T ss_pred             hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH---HH
Confidence            776778888888999999999999999999999999999999999999999999999999999999999998888   77


Q ss_pred             HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH-HHHHH-cCChhHHHHHHHHHHhcChhcH
Q 043837          165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC-KVLVK-LGRGKDALSSCTEALNINEELI  242 (409)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la-~~~~~-~~~~~~A~~~~~~al~~~p~~~  242 (409)
                      .-+-.+|...         +++.+|...-+.+++.-|.    ++..+..+| .++.. ----++|.+.+++++.+.|...
T Consensus       372 ~GL~hsYLA~---------~~~kEA~~~An~~~~~~~~----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~  438 (564)
T KOG1174|consen  372 RGLFHSYLAQ---------KRFKEANALANWTIRLFQN----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT  438 (564)
T ss_pred             HHHHHHHHhh---------chHHHHHHHHHHHHHHhhc----chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence            7787777777         9999999999999999999    677888886 44443 3345899999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      .+...+|.++...|.++.++..+++.+...|+. .+...|+.+..+.+.
T Consensus       439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne  486 (564)
T KOG1174|consen  439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE  486 (564)
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999885 455566666665554

>TIGR00540 hemY_coli hemY protein

Probab=99.79  E-value=8.9e-17  Score=147.91  Aligned_cols=257  Identities=14%  Similarity=0.010  Sum_probs=204.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLS-EAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYI   78 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~   78 (409)
                      +|+++.|..++.++.+..|++. .+....+.++...|+++.|...+...+... .........+..+...|+|++|++.+
T Consensus       131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l  210 (409)
T TIGR00540       131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDII  210 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4899999999999999999885 567778999999999999999999988864 34566777888899999999999999


Q ss_pred             HHHHHhhCCCcHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837           79 DKVVLVFSPACSKAK----LLKVKLLLAAKDYASAISETGYLLKEDE----NNLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus        79 ~~~~~~~~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                      .+ ..+..+.++..+    .....-++..+..+++.+.+.++.+..|    +++.++..++..+...|++++|++.++++
T Consensus       211 ~~-l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~  289 (409)
T TIGR00540       211 DN-MAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG  289 (409)
T ss_pred             HH-HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            88 665533333322    1222222445555666778888888887    58999999999999999999999999999


Q ss_pred             HccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH
Q 043837          151 LRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS  230 (409)
Q Consensus       151 l~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  230 (409)
                      ++..|++....  +..+. .+       ..+..++...++..++++++..|+++  ...++..+|++++..|+|++|.++
T Consensus       290 l~~~pd~~~~~--~~~l~-~~-------~~l~~~~~~~~~~~~e~~lk~~p~~~--~~~ll~sLg~l~~~~~~~~~A~~~  357 (409)
T TIGR00540       290 LKKLGDDRAIS--LPLCL-PI-------PRLKPEDNEKLEKLIEKQAKNVDDKP--KCCINRALGQLLMKHGEFIEAADA  357 (409)
T ss_pred             HhhCCCcccch--hHHHH-Hh-------hhcCCCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHHcccHHHHHHH
Confidence            99999987511  01110 00       11223788999999999999999943  127889999999999999999999


Q ss_pred             HH--HHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          231 CT--EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       231 ~~--~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      |+  .+++..|+... +..+|.++.++|+.++|.+++++++..
T Consensus       358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99  57788887666 559999999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.79  E-value=7.6e-17  Score=147.86  Aligned_cols=257  Identities=23%  Similarity=0.192  Sum_probs=212.2

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      ..++++.+++|++.+|+|+.+.+.++.-|..+++.+.|...+.+.+..  -.....+.-.|+.+-.++++.+|+.+.+. 
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~-  538 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA-  538 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH-
Confidence            467999999999999999999999999999999999999999998885  45677888899999999999999999988 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----------------------------------------
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE----------------------------------------  121 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------------------------------------  121 (409)
                      ++...|.+.........+-...++.++|+..+...+.+-.                                        
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            7777777655555555555555665555555444432211                                        


Q ss_pred             ------------------------CC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837          122 ------------------------NN-----LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK  172 (409)
Q Consensus       122 ------------------------~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~  172 (409)
                                              +.     ...|...+..+...+..++|..++.++-.++|....   .|+..|.++.
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~---~~~~~G~~~~  695 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS---VYYLRGLLLE  695 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH---HHHHhhHHHH
Confidence                                    00     114567778888888888898899999888888887   8888888888


Q ss_pred             HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH--HHHHHHhcChhcHHHHHHHHH
Q 043837          173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS--SCTEALNINEELIEALVQRGE  250 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~  250 (409)
                      ..         |++.+|...|..++.++|+    .+.....+|.++.+.|+..-|..  .+..+++++|.++++|+.+|.
T Consensus       696 ~~---------~~~~EA~~af~~Al~ldP~----hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~  762 (799)
T KOG4162|consen  696 VK---------GQLEEAKEAFLVALALDPD----HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE  762 (799)
T ss_pred             HH---------HhhHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            77         9999999999999999999    45588899999999998888877  999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          251 AKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       251 ~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      ++..+|+.++|.++|+.++++.+.+|-
T Consensus       763 v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  763 VFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999887753

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.79  E-value=9.7e-17  Score=146.33  Aligned_cols=244  Identities=18%  Similarity=0.172  Sum_probs=202.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--------HHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHhh---
Q 043837           18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--------LQAQSTF-DSALKLYDSGEYTKPLEYIDKVVLVF---   85 (409)
Q Consensus        18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~-~~a~~~~~~~~~~~A~~~~~~~~~~~---   85 (409)
                      +|....+...++..|..+|+++.|...+..++...        ....... ..|..+...+++.+|+.+|.+ ++.+   
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~-AL~i~e~  273 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE-ALTIREE  273 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHH
Confidence            67777888889999999999999999999998872        3333333 488899999999999999998 4433   


Q ss_pred             -----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           86 -----SPACSKAKLLKVKLLLAAKDYASAISETGYLLKED--------ENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        86 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                           +|..+.++.++|..|...|++.+|..++++++++.        |.-...+..++.++...+++++|+.+++++++
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                 45667889999999999999999999999999863        22344678999999999999999999999988


Q ss_pred             c-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC----CccchHHHHHHHHHHHHHcCC
Q 043837          153 L-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN----HTAHNVHLYLGLCKVLVKLGR  223 (409)
Q Consensus       153 ~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~la~~~~~~~~  223 (409)
                      +     -++++.+...+.+++.++...         |++++|.+.+++|+.+...    ........+.++|..+.+.++
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~---------gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKM---------GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHh---------cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence            5     345556677888888888888         9999999999999986521    111146678899999999999


Q ss_pred             hhHHHHHHHHHHhc-------ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          224 GKDALSSCTEALNI-------NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       224 ~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      +.+|...|.+++.+       .|+....+.+|+.+|..+|+++.|+++.++++..
T Consensus       425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            99999999998865       4566788999999999999999999999998853

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.78  E-value=2.8e-16  Score=143.84  Aligned_cols=250  Identities=13%  Similarity=0.097  Sum_probs=205.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH--HHHHHHHHHHhCCCchHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ--STFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      |+|++|.+.+.++-+..+...-.+...+.+..+.|+++.|...+.++....+...  .....+..+...|++++|+..++
T Consensus        98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~  177 (398)
T PRK10747         98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD  177 (398)
T ss_pred             CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            8999999888876665443344444446676999999999999999988655442  22345788899999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----------------------------------------
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE----------------------------------------  119 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------------------------------  119 (409)
                      + +.+.+|+++.++..++.+|...|+|++|++.+.++.+.                                        
T Consensus       178 ~-~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp  256 (398)
T PRK10747        178 K-LLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS  256 (398)
T ss_pred             H-HHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence            9 89999999999999999999999999999666555432                                        


Q ss_pred             --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Q 043837          120 --DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAAL  197 (409)
Q Consensus       120 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  197 (409)
                        .|+++.++..++..+...|+.++|...++++++..| +..   .....+.+           ..++.++++..+++.+
T Consensus       257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~---l~~l~~~l-----------~~~~~~~al~~~e~~l  321 (398)
T PRK10747        257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER---LVLLIPRL-----------KTNNPEQLEKVLRQQI  321 (398)
T ss_pred             HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH---HHHHHhhc-----------cCCChHHHHHHHHHHH
Confidence              244666778889999999999999999999999544 444   22222222           2289999999999999


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          198 ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       198 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      +..|+    ++..+..+|.++...++|++|.++|+++++..|++.. +..++.++..+|+.++|..+|++++.+.
T Consensus       322 k~~P~----~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        322 KQHGD----TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             hhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999    6779999999999999999999999999999998654 6689999999999999999999998764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=5e-16  Score=151.38  Aligned_cols=206  Identities=11%  Similarity=0.034  Sum_probs=168.3

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q 043837           61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE------NNLEALLHRGRAY  134 (409)
Q Consensus        61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~  134 (409)
                      .-..+...+++.+++..|+.+-....|-...+....|..|+..++.++|+.+|.+++.-.|      ........|-.+|
T Consensus       298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~  377 (822)
T PRK14574        298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL  377 (822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence            3344555688888888887622223344567788889999999999999999999987653      2233346778888


Q ss_pred             HhcCChHHHHHHHHHHHccCC------------CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          135 YYLADHDVAQRHFQKGLRLDP------------EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      ...+++++|..++++..+..|            .+++.......++.++...         |++.+|.+.+++.+...|.
T Consensus       378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~---------gdl~~Ae~~le~l~~~aP~  448 (822)
T PRK14574        378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL---------NDLPTAQKKLEDLSSTAPA  448 (822)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Confidence            999999999999999887555            2333334556666666666         9999999999999999999


Q ss_pred             CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          203 HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       203 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                          +..++..+|.++...|.+..|+..++.++.++|++..+...++.++..+++|.+|......+++..|+++.+.
T Consensus       449 ----n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        449 ----NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence                7889999999999999999999999999999999999999999999999999999999999999999998654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.78  E-value=1.1e-16  Score=136.54  Aligned_cols=186  Identities=22%  Similarity=0.216  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS---KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---AL  127 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~  127 (409)
                      .....+..+..++..|++++|+..+++ ++..+|.++   .+++.+|.++...+++++|+..++++++.+|+++.   ++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEA-LESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            345667778888888888888888888 777777765   57788888888889999999999999888887665   67


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837          128 LHRGRAYYYL--------ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL  199 (409)
Q Consensus       128 ~~l~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  199 (409)
                      +.+|.++...        +++++|++.+++++..+|++.....++..+......                          
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~--------------------------  164 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR--------------------------  164 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH--------------------------
Confidence            8888888876        778888888888888888887633333333222211                          


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                             .......+|.++...|++.+|+..+++++...|+   .+.+++.++.++..+|++++|..+++......|
T Consensus       165 -------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       165 -------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             -------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                   1123457788888999999999999999988665   457889999999999999999998877766655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=9e-19  Score=148.62  Aligned_cols=66  Identities=58%  Similarity=0.876  Sum_probs=61.9

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ...+|.+|+|.++++..||+++||+++++|||||++.    +.++|++|.+|||+|+||+||+.||.+.+
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~yD~~g~   68 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIYDQYGE   68 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence            4578999999999999999999999999999999987    77899999999999999999999999664

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.8e-18  Score=144.59  Aligned_cols=69  Identities=57%  Similarity=0.906  Sum_probs=65.1

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ...|+|++|+|+++++.+|||+|||+||+++|||+++++ +.|..+|++|+.||++|+||++|+.||+..
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AYEVLsDpekRk~YD~~G   82 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAYEVLSDPEKRKHYDTYG   82 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence            357999999999999999999999999999999999988 689999999999999999999999999954

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=3.8e-17  Score=134.81  Aligned_cols=124  Identities=26%  Similarity=0.341  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHH
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEAL  245 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  245 (409)
                      ..+.......++..+++.++|.+|+..|.+||+++|.    ++.+|.+++.+|.++|+++.|++.|+.+|.++|.+.++|
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay  152 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY  152 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence            3444555567788889999999999999999999999    777999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Q 043837          246 VQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK  293 (409)
Q Consensus       246 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  293 (409)
                      .++|.+|..+|++++|++.|+++|+++|++...+..|..+...++..+
T Consensus       153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  153 GRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999998887644

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.75  E-value=1.3e-15  Score=142.05  Aligned_cols=259  Identities=15%  Similarity=0.160  Sum_probs=183.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      +|+.++|+..+-.|-.++|.+.+.|..++....++|++..|.-++.+++.. +......+.++..+-+.|++..|...|.
T Consensus       186 rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~  265 (895)
T KOG2076|consen  186 RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFL  265 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            366777777777777777777777777777777777777777777777774 3345555667777777777777777777


Q ss_pred             HHHHhhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           80 KVVLVFSPAC-----SKAKLLKVKLLLAAKDYASAISETGYLLKED--ENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        80 ~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      + +....|..     ...-...+..+...++-+.|++.+..++...  ....+-+..++.++.....++.|+..+.....
T Consensus       266 ~-l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~  344 (895)
T KOG2076|consen  266 Q-LLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN  344 (895)
T ss_pred             H-HHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence            7 66666622     1222334556666666677777777776622  22333455666666666666666655544332


Q ss_pred             ----------------------cC--CC-------------------------------------cHHHHHHHHHHHHHH
Q 043837          153 ----------------------LD--PE-------------------------------------HSELKKAYFALKNLL  171 (409)
Q Consensus       153 ----------------------~~--p~-------------------------------------~~~~~~~~~~l~~~~  171 (409)
                                            +.  |+                                     ..+....+..+    
T Consensus       345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~----  420 (895)
T KOG2076|consen  345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDL----  420 (895)
T ss_pred             cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHH----
Confidence                                  00  00                                     00011133333    


Q ss_pred             HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHH
Q 043837          172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEA  251 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  251 (409)
                           +..+.+.|++.+|+.++..++...+..   +..+|+.+|.||..++.+++|+.+|++++.+.|++.++...++.+
T Consensus       421 -----a~al~~~~~~~~Al~~l~~i~~~~~~~---~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl  492 (895)
T KOG2076|consen  421 -----ADALTNIGKYKEALRLLSPITNREGYQ---NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL  492 (895)
T ss_pred             -----HHHHHhcccHHHHHHHHHHHhcCcccc---chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence                 445555599999999999999887764   578999999999999999999999999999999999999999999


Q ss_pred             HHhccCHHHHHHHHHHHHhhC
Q 043837          252 KLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       252 ~~~~~~~~~A~~~~~~al~~~  272 (409)
                      +..+|+.++|++.++....-+
T Consensus       493 ~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  493 YQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             HHhcCCHHHHHHHHhcccCCC
Confidence            999999999999999877433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.1e-14  Score=120.98  Aligned_cols=225  Identities=20%  Similarity=0.188  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-----EALLH  129 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~  129 (409)
                      ....|..++.++-..+.++|+..|-. +++.+|...++.+.+|..+.+.|+.+.||..-+..++ .|+.+     -+...
T Consensus        35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e-~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~q  112 (389)
T COG2956          35 LSRDYVKGLNFLLSNQPDKAVDLFLE-MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQ  112 (389)
T ss_pred             ccHHHHhHHHHHhhcCcchHHHHHHH-HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHH
Confidence            44567788888888888888888888 7888888888888888888888888888887666554 45432     26678


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc-cchH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT-AHNV  208 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~  208 (409)
                      ||.-|...|-++.|...|........--..   ++..+..+|...         .+|++||+.-++..++.+..- ...+
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~---AlqqLl~IYQ~t---------reW~KAId~A~~L~k~~~q~~~~eIA  180 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEG---ALQQLLNIYQAT---------REWEKAIDVAERLVKLGGQTYRVEIA  180 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcchhhhHH---HHHHHHHHHHHh---------hHHHHHHHHHHHHHHcCCccchhHHH
Confidence            888888888888888888887664433334   677777777777         888888888888888777532 2245


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHH
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD-MNIREALMRAEK  287 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~  287 (409)
                      ..|..++..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..|+.
T Consensus       181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~  260 (389)
T COG2956         181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA  260 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            6777888888888888888888888888888888888888888888888888888888888888875 556677777777


Q ss_pred             HHhhcc
Q 043837          288 ALKMSK  293 (409)
Q Consensus       288 ~~~~~~  293 (409)
                      .+.+..
T Consensus       261 ~lg~~~  266 (389)
T COG2956         261 QLGKPA  266 (389)
T ss_pred             HhCCHH
Confidence            666543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.73  E-value=5.1e-15  Score=136.05  Aligned_cols=286  Identities=16%  Similarity=0.060  Sum_probs=218.4

Q ss_pred             hHHHHHHHHHHHHhC--CCCHHHHHHHH-HHHHHcCChHHHhHHHHHHHHHHH------HHHHHHHHHHHHHh-------
Q 043837            4 YSEALDDLNTAIEAD--PTLSEAYFHRG-SVLRQLCRVKARNSVAEKELSQLL------QAQSTFDSALKLYD-------   67 (409)
Q Consensus         4 ~~~A~~~~~~al~~~--p~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~a~~~~~-------   67 (409)
                      -..|+..++..+...  |.++..+...+ .|+...+..++++.++.+++....      ....++..++.|-.       
T Consensus       373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~  452 (799)
T KOG4162|consen  373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL  452 (799)
T ss_pred             chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence            345777777777766  66665555544 455667788888888888777332      23334444444421       


Q ss_pred             ----CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcCChHH
Q 043837           68 ----SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-DENNLEALLHRGRAYYYLADHDV  142 (409)
Q Consensus        68 ----~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~  142 (409)
                          .-...+++..+++ +++.+|+++.+.+.++.-|...++.+.|+...++++++ ..+++.+|..++.++...+++..
T Consensus       453 ~seR~~~h~kslqale~-av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~  531 (799)
T KOG4162|consen  453 KSERDALHKKSLQALEE-AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE  531 (799)
T ss_pred             hHHHHHHHHHHHHHHHH-HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence                1235688899988 89999999999999999999999999999999999999 45678899999999999999999


Q ss_pred             HHHHHHHHHccCCCcHHHH------------------------HHHHHHHHHHH--------------------------
Q 043837          143 AQRHFQKGLRLDPEHSELK------------------------KAYFALKNLLK--------------------------  172 (409)
Q Consensus       143 A~~~~~~al~~~p~~~~~~------------------------~~~~~l~~~~~--------------------------  172 (409)
                      |+.....++.-.|+|....                        ..|...-.+..                          
T Consensus       532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s  611 (799)
T KOG4162|consen  532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS  611 (799)
T ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence            9999999998777732100                        00110000000                          


Q ss_pred             -----------------------------------------HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH
Q 043837          173 -----------------------------------------KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY  211 (409)
Q Consensus       173 -----------------------------------------~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  211 (409)
                                                               .+..+..+...++.++|..++.++-.++|.    .+..|
T Consensus       612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l----~~~~~  687 (799)
T KOG4162|consen  612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL----SASVY  687 (799)
T ss_pred             hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh----hHHHH
Confidence                                                     001122333336777788888888888887    78899


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          212 LGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE--DLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       212 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      +..|.++...|++.+|...|..++.++|+++.+...+|.++.+.|+..-|..  .+..+++++|.++++|..++.+.+.+
T Consensus       688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~  767 (799)
T KOG4162|consen  688 YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL  767 (799)
T ss_pred             HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999998887777  99999999999999999999998888


Q ss_pred             hhcch
Q 043837          290 KMSKR  294 (409)
Q Consensus       290 ~~~~~  294 (409)
                      ...+.
T Consensus       768 Gd~~~  772 (799)
T KOG4162|consen  768 GDSKQ  772 (799)
T ss_pred             cchHH
Confidence            77554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.73  E-value=2.8e-15  Score=136.84  Aligned_cols=226  Identities=17%  Similarity=0.169  Sum_probs=187.4

Q ss_pred             CCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH---------HHHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEA--------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL---------QAQSTFDSAL   63 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---------~~~~~~~~a~   63 (409)
                      .|+|+.|+..|+++++.        .|.-......+|.+|..++++.+|...|.+++....         .+....++|.
T Consensus       212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~  291 (508)
T KOG1840|consen  212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV  291 (508)
T ss_pred             hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            37999999999999998        666666667799999999999999999999988543         4566788899


Q ss_pred             HHHhCCCchHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--------CCHHHH
Q 043837           64 KLYDSGEYTKPLEYIDKVVLVF--------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE--------NNLEAL  127 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~  127 (409)
                      .+++.|++.+|..++++ ++.+        .|.-...+..++.++..++++++|+.++++++++.-        .-+..+
T Consensus       292 ly~~~GKf~EA~~~~e~-Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~  370 (508)
T KOG1840|consen  292 LYYKQGKFAEAEEYCER-ALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY  370 (508)
T ss_pred             HHhccCChHHHHHHHHH-HHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            99999999999999988 4433        234466788899999999999999999999998632        335578


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccC-----CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc---
Q 043837          128 LHRGRAYYYLADHDVAQRHFQKGLRLD-----PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL---  199 (409)
Q Consensus       128 ~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---  199 (409)
                      .++|.+|..+|++++|.+.+++|+.+.     ..+......+..++..+...         +++.+|...|.+++.+   
T Consensus       371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~---------k~~~~a~~l~~~~~~i~~~  441 (508)
T KOG1840|consen  371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL---------KKYEEAEQLFEEAKDIMKL  441 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh---------cccchHHHHHHHHHHHHHH
Confidence            899999999999999999999999864     22333445777777777777         9999999999988775   


Q ss_pred             -CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          200 -DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       200 -~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                       .|+++. ....+.+||.+|..+|++++|+++.+.++..
T Consensus       442 ~g~~~~~-~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  442 CGPDHPD-VTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             hCCCCCc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence             345544 6778999999999999999999999999854

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.72  E-value=6.6e-14  Score=126.47  Aligned_cols=280  Identities=16%  Similarity=0.149  Sum_probs=227.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      ++|...++..+++|+..|+..+.+..+|..+..+|+.++|.......+.. ..+...+...++.+-...+|++||++|..
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n  100 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN  100 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            57888999999999999999999999999999999999999998888774 44566778889999999999999999998


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCc
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD---PEH  157 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~  157 (409)
                       ++...|++..++.-++....++++++-....-.+.+++.|..-..|...+.++...|++..|...++...+..   |+.
T Consensus       101 -Al~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~  179 (700)
T KOG1156|consen  101 -ALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSK  179 (700)
T ss_pred             -HHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCH
Confidence             9999999999999999999999999999999999999999999999999999999999999998887766544   332


Q ss_pred             HHHHH--HHHHHHHHHH-------------------------HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc------
Q 043837          158 SELKK--AYFALKNLLK-------------------------KTKSAEDNVSKGKLRVAVEDFKAALALDPNHT------  204 (409)
Q Consensus       158 ~~~~~--~~~~l~~~~~-------------------------~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------  204 (409)
                      .....  .......+..                         ...++..+++.+++++|+..|...+..+|++-      
T Consensus       180 ~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l  259 (700)
T KOG1156|consen  180 EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL  259 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence            22100  0000000000                         11134555566888888888887777666541      


Q ss_pred             --------------------------------------------------------------------------------
Q 043837          205 --------------------------------------------------------------------------------  204 (409)
Q Consensus       205 --------------------------------------------------------------------------------  204 (409)
                                                                                                      
T Consensus       260 ~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~l  339 (700)
T KOG1156|consen  260 EKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFL  339 (700)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHH
Confidence                                                                                            


Q ss_pred             ----------------------------cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837          205 ----------------------------AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE  256 (409)
Q Consensus       205 ----------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  256 (409)
                                                  ....+.++.++.-+...|+++.|..+++.|+...|+.++.+...|+++...|
T Consensus       340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G  419 (700)
T KOG1156|consen  340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAG  419 (700)
T ss_pred             HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcC
Confidence                                        0122445567777888999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          257 DWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       257 ~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                      +.++|..++.++.+++-.|.-+....
T Consensus       420 ~l~eAa~~l~ea~elD~aDR~INsKc  445 (700)
T KOG1156|consen  420 LLDEAAAWLDEAQELDTADRAINSKC  445 (700)
T ss_pred             ChHHHHHHHHHHHhccchhHHHHHHH
Confidence            99999999999999987776655433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.71  E-value=3.4e-16  Score=121.53  Aligned_cols=99  Identities=21%  Similarity=0.159  Sum_probs=44.3

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE  263 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  263 (409)
                      |++++|+..|++++.++|.    +..++.++|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+.
T Consensus        38 g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~  113 (144)
T PRK15359         38 GDYSRAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE  113 (144)
T ss_pred             CCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            4444444444444444444    333444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHH
Q 043837          264 DLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       264 ~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      .|++++++.|+++..+..+..+.
T Consensus       114 ~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        114 AFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             HHHHHHHhCCCChHHHHHHHHHH
Confidence            44444444444444444444333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.71  E-value=6.3e-16  Score=120.04  Aligned_cols=120  Identities=18%  Similarity=0.105  Sum_probs=88.5

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH-------HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 043837          110 ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR-------HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS  182 (409)
Q Consensus       110 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  182 (409)
                      ...++++++++|++   ++.+|.++.       -..       +|++++.++|.+..   ++..++.++...        
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~-------~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~--------   71 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASW-------QEGDYSRAVIDFSWLVMAQPWSWR---AHIALAGTWMML--------   71 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHH-------HcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHH--------
Confidence            45778888888774   334444332       122       35566677888777   788888888777        


Q ss_pred             cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837          183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT  255 (409)
Q Consensus       183 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  255 (409)
                       |++++|+..|.+++.++|+    ++.+++++|.++..+|++++|+..|++++++.|+++..+..++.+...+
T Consensus        72 -g~~~~A~~~y~~Al~l~p~----~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         72 -KEYTTAINFYGHALMLDAS----HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             -hhHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence             8888888888888888888    5668888888888888888888888888888888888887777766543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.71  E-value=3.3e-14  Score=129.37  Aligned_cols=209  Identities=16%  Similarity=0.107  Sum_probs=164.2

Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHH
Q 043837           17 ADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKA   92 (409)
Q Consensus        17 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~   92 (409)
                      .||+++.++..+|.++...++.+.+...+........    .....+..+..++..|++++|+..+++ ++..+|.+..+
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~-~l~~~P~~~~a   79 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQ-LLDDYPRDLLA   79 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCcHHH
Confidence            3799999999999999999999988666666555332    334566778888999999999999988 78888988877


Q ss_pred             HHHHHHHHHHccCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837           93 KLLKVKLLLAAKDY----ASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK  168 (409)
Q Consensus        93 ~~~~a~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~  168 (409)
                      +.. +..+...+++    ..+...+......+|....++..+|.++..+|++++|+..+++++.+.|++..   .+..++
T Consensus        80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---~~~~la  155 (355)
T cd05804          80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---AVHAVA  155 (355)
T ss_pred             HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---HHHHHH
Confidence            665 5555555444    34444444433566777777788899999999999999999999999999877   788888


Q ss_pred             HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                      .++...         |++++|+.++.+++...|.++......+..++.++...|++++|+..+++++...|
T Consensus       156 ~i~~~~---------g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         156 HVLEMQ---------GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHc---------CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            888877         99999999999999988764433445677899999999999999999999876655

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.69  E-value=8.1e-15  Score=119.98  Aligned_cols=159  Identities=19%  Similarity=0.265  Sum_probs=126.7

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Q 043837           97 VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS  176 (409)
Q Consensus        97 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~  176 (409)
                      +-.|+..|+++......++..  +|..         -+...++.++++..+++++..+|++..   .|..++.++...  
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~---~w~~Lg~~~~~~--   86 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSE---QWALLGEYYLWR--   86 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHC--
Confidence            446777888777644442221  2211         111356778888889999999999888   888888888877  


Q ss_pred             HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHH-HHcCC--hhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837          177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL-VKLGR--GKDALSSCTEALNINEELIEALVQRGEAKL  253 (409)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~  253 (409)
                             |++++|+..|++++++.|+    +..++..+|.++ ...|+  +++|...++++++.+|+++.++..+|.++.
T Consensus        87 -------g~~~~A~~a~~~Al~l~P~----~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~  155 (198)
T PRK10370         87 -------NDYDNALLAYRQALQLRGE----NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAF  155 (198)
T ss_pred             -------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence                   8999999999999999998    677899999875 67777  599999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          254 LTEDWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       254 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                      ..|++++|+.++++++++.|.+.+-...+
T Consensus       156 ~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        156 MQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            99999999999999999998776544444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.68  E-value=5.2e-15  Score=139.17  Aligned_cols=280  Identities=11%  Similarity=-0.007  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ---LLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      ..|..+|++|.++||.++++.-..+..|.+..+++.|.......-..   ......+...+..+++.++...|+..+.. 
T Consensus       509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs-  587 (1238)
T KOG1127|consen  509 KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS-  587 (1238)
T ss_pred             HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH-
Confidence            34666677777777777666666677777777777665553333221   12234455577778888999999999987 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH--
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE--  159 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--  159 (409)
                      ++..+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|+|.+|+..+...+........  
T Consensus       588 ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q  667 (1238)
T KOG1127|consen  588 ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ  667 (1238)
T ss_pred             HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            889999999999999999999999999999999999999998888899999999999999999887776543221110  


Q ss_pred             --HHH------------------------------------------HHHHHHHHHHH---HH-----------------
Q 043837          160 --LKK------------------------------------------AYFALKNLLKK---TK-----------------  175 (409)
Q Consensus       160 --~~~------------------------------------------~~~~l~~~~~~---~~-----------------  175 (409)
                        ...                                          .|..++.+...   .+                 
T Consensus       668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e  747 (1238)
T KOG1127|consen  668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLE  747 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence              000                                          00000000000   00                 


Q ss_pred             ---------------------------------HHhhHHh------c--CCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837          176 ---------------------------------SAEDNVS------K--GKLRVAVEDFKAALALDPNHTAHNVHLYLGL  214 (409)
Q Consensus       176 ---------------------------------~~~~~~~------~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  214 (409)
                                                       .+..++.      .  .+...|+.++.++++++.+    +...|..|
T Consensus       748 ~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an----n~~~WnaL  823 (1238)
T KOG1127|consen  748 KTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN----NEGLWNAL  823 (1238)
T ss_pred             hcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc----cHHHHHHH
Confidence                                             0000000      0  2334678888888888877    66688888


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          215 CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       215 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      |.+ ...|++.-|..+|-+++...|.....|.++|.++.+..+++-|...+.++..++|.+...+...+.+-..+.
T Consensus       824 GVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG  898 (1238)
T KOG1127|consen  824 GVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG  898 (1238)
T ss_pred             HHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence            877 556788888888888888888888899999999999999999999999999999998877766666655554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=1.2e-15  Score=126.11  Aligned_cols=164  Identities=18%  Similarity=0.144  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            4 YSEALDDLNTAIEADPTLSEAYF--HRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      .+.|+++++.++.+.++......  .+..+.....+....+  .... .....++..-.++..+++.++|.+|+..|.+ 
T Consensus        31 leva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~-e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~-  106 (304)
T KOG0553|consen   31 LEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEI--LTPE-EDKALAESLKNEGNKLMKNKDYQEAVDKYTE-  106 (304)
T ss_pred             HHHhHHHHHHHhCcchhhccccccccHHHHHHHhccCcccc--cChH-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-
Confidence            35577777777777665432211  1111222222200000  0000 2344566777889999999999999999999 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      ++.++|.++..|.++|.+|.++|.++.|++.++.+|.++|....+|..||.+|+.+|++++|++.|+++|.++|++..  
T Consensus       107 AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~--  184 (304)
T KOG0553|consen  107 AIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES--  184 (304)
T ss_pred             HHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             HHHHHHHHHHHHH
Q 043837          162 KAYFALKNLLKKT  174 (409)
Q Consensus       162 ~~~~~l~~~~~~~  174 (409)
                       ++.+|..+...+
T Consensus       185 -~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  185 -YKSNLKIAEQKL  196 (304)
T ss_pred             -HHHHHHHHHHHh
Confidence             565555554433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.67  E-value=6.7e-14  Score=127.36  Aligned_cols=264  Identities=12%  Similarity=-0.023  Sum_probs=182.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCchHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-----LLQAQSTFDSALKLYDSGEYTKPL   75 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~A~   75 (409)
                      .|++++|+..++++++.+|++..++.. +..+...+++..+...+...+..     ..........+..+...|++++|+
T Consensus        56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  134 (355)
T cd05804          56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE  134 (355)
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            378889999999999999998877765 66666666655554444444431     112334456777889999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           76 EYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL----EALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        76 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      ..+++ ++..+|.++.++..+|.++...|++++|+..+++++...|..+    ..+..++.++...|++++|+..+++++
T Consensus       135 ~~~~~-al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         135 EAARR-ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHH-HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999 8999999999999999999999999999999999999887533    246689999999999999999999998


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      ...|..............+......+. .-...+++.......   ...+. .. ........+.++...++.++|...+
T Consensus       214 ~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~w~~~~~~~~---~~~~~-~~-~~~~~~~~a~~~~~~~~~~~a~~~L  287 (355)
T cd05804         214 APSAESDPALDLLDAASLLWRLELAGH-VDVGDRWEDLADYAA---WHFPD-HG-LAFNDLHAALALAGAGDKDALDKLL  287 (355)
T ss_pred             ccccCCChHHHHhhHHHHHHHHHhcCC-CChHHHHHHHHHHHH---hhcCc-cc-chHHHHHHHHHHhcCCCHHHHHHHH
Confidence            776632221111011011111110000 000012222222211   11122 11 2333347888999999999999999


Q ss_pred             HHHHhcCh---------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          232 TEALNINE---------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       232 ~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      +.+.....         ....+....|.++...|++++|++.+..++.+.
T Consensus       288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            88765322         235677889999999999999999999999765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.67  E-value=2.4e-14  Score=129.32  Aligned_cols=250  Identities=16%  Similarity=0.133  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 043837           25 YFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA  103 (409)
Q Consensus        25 ~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~  103 (409)
                      ++..+.-.+..++|...+..+...+.. +...+..-.+++.+...|+-++|..+... .+..++.+.-.|..+|.++...
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~-glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRL-GLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHH-HhccCcccchhHHHHHHHHhhh
Confidence            344444444444444444444444442 22233334444444445555555554444 4444444445555555555555


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhc
Q 043837          104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK  183 (409)
Q Consensus       104 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  183 (409)
                      .+|++|+.+|+.|+.++|+|...|.-++....++++++-....-.+.+++.|....   .|...+......         
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra---~w~~~Avs~~L~---------  156 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA---SWIGFAVAQHLL---------  156 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH---HHHHHHHHHHHH---------
Confidence            55555555555555555555555555555555555555554444444555444444   444444444444         


Q ss_pred             CCHHHHHHHHHHHHccC---CCCc-cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHH
Q 043837          184 GKLRVAVEDFKAALALD---PNHT-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWE  259 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~---~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  259 (409)
                      |++..|+..++...+..   |+.. .....+......++.+.|.+++|++.+..--..--+........+.++.++++++
T Consensus       157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE  236 (700)
T KOG1156|consen  157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE  236 (700)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence            66666666665555433   2210 0122333444555556666666655554433222233444566888999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          260 GAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       260 ~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      +|+..|...+..+|++......+..+.-
T Consensus       237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lg  264 (700)
T KOG1156|consen  237 EAVKVYRRLLERNPDNLDYYEGLEKALG  264 (700)
T ss_pred             hHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence            9999999999999999888887777763

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.66  E-value=4e-12  Score=127.79  Aligned_cols=251  Identities=14%  Similarity=0.012  Sum_probs=164.3

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPT-LSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYI   78 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~   78 (409)
                      |++++|...|.++.+.... +...|..+..+|.+.|++++|...+......  .++...+-.....+.+.|++++|+.+|
T Consensus       451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf  530 (1060)
T PLN03218        451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY  530 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            5667777777777665432 4566777777777777777777777666542  123334444455566777777777777


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837           79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE----DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD  154 (409)
Q Consensus        79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  154 (409)
                      ..+....-..+..+|..+...+.+.|++++|.+.+.+....    .|+ ...|..+...|.+.|++++|.+.|+.+.+..
T Consensus       531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            76322222234566777777777777777777777777642    343 4566667777777777777777777777654


Q ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          155 -PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       155 -p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                       +.+..   .|..+...+...         |++++|+..|.+..+.  .|+     ...|..+..++.+.|++++|...+
T Consensus       610 i~p~~~---tynsLI~ay~k~---------G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        610 IKGTPE---VYTIAVNSCSQK---------GDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             CCCChH---HHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHH
Confidence             22333   555665555555         7777777777777664  333     446667777777777777777777


Q ss_pred             HHHHhcC-hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          232 TEALNIN-EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       232 ~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      .+..+.. +.+..++..+..+|.+.|++++|.+.|+++.+
T Consensus       673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            7776643 23556677777777777777777777777654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.66  E-value=1.5e-12  Score=130.79  Aligned_cols=260  Identities=12%  Similarity=0.025  Sum_probs=211.0

Q ss_pred             CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPT-LSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEY   77 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~   77 (409)
                      .|++++|...|+++.+.... +...|..+...|.+.|++++|...+......  .++...+......+.+.|++++|..+
T Consensus       485 ~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l  564 (1060)
T PLN03218        485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV  564 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            37889999999999887543 6788999999999999999999998887653  23344455566677888999999999


Q ss_pred             HHHHHHh----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           78 IDKVVLV----FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED-ENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        78 ~~~~~~~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      +.+ +..    ..| +..+|..+..+|.+.|++++|++.|+...+.+ +.+...|..+...|.+.|++++|+..|++...
T Consensus       565 f~e-M~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        565 LAE-MKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHH-HHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            998 443    234 46788889999999999999999999999876 45678899999999999999999999999887


Q ss_pred             c--CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH
Q 043837          153 L--DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS  230 (409)
Q Consensus       153 ~--~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  230 (409)
                      .  .|+..    .|..+...+...         |++++|..++..+.+.....   +...|..+..+|.+.|++++|+..
T Consensus       643 ~Gv~PD~~----TynsLI~a~~k~---------G~~eeA~~l~~eM~k~G~~p---d~~tynsLI~ay~k~G~~eeA~~l  706 (1060)
T PLN03218        643 KGVKPDEV----FFSALVDVAGHA---------GDLDKAFEILQDARKQGIKL---GTVSYSSLMGACSNAKNWKKALEL  706 (1060)
T ss_pred             cCCCCCHH----HHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHH
Confidence            5  45533    566666666666         99999999999998754321   466899999999999999999999


Q ss_pred             HHHHHhc--ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--CCCcHHHH
Q 043837          231 CTEALNI--NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ--SPQDMNIR  279 (409)
Q Consensus       231 ~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~  279 (409)
                      |++....  .| +...|..+...|.+.|++++|++.|+++...  .|+.....
T Consensus       707 f~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~  758 (1060)
T PLN03218        707 YEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS  758 (1060)
T ss_pred             HHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            9988653  44 5678999999999999999999999988764  46644433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=7.2e-13  Score=118.67  Aligned_cols=190  Identities=19%  Similarity=0.211  Sum_probs=154.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      ++|++|++...+++...|++..+....-.++.++++|++|+................|++|.+.|+.+..++|+..++. 
T Consensus        26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~-  104 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKG-  104 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhc-
Confidence            5799999999999999999999999999999999999999966555444333333348999999999999999999973 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------------------------------CHHHHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-------------------------------NLEALLHR  130 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~~~~~~l  130 (409)
                         .++.+..+....|.+++++++|++|+..|+.+++.+.+                               +.+.+++.
T Consensus       105 ---~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~  181 (652)
T KOG2376|consen  105 ---LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNT  181 (652)
T ss_pred             ---ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHH
Confidence               46667789999999999999999999999998654322                               33468999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcc--------CCCcH----HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          131 GRAYYYLADHDVAQRHFQKGLRL--------DPEHS----ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       131 ~~~~~~~~~~~~A~~~~~~al~~--------~p~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      +.++...|+|.+|++.+++++.+        +....    ++..+...++.++...         |+.++|...|...++
T Consensus       182 Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~---------Gqt~ea~~iy~~~i~  252 (652)
T KOG2376|consen  182 ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ---------GQTAEASSIYVDIIK  252 (652)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHH
Confidence            99999999999999999999432        11111    1334666777777777         999999999999998


Q ss_pred             cCCCCc
Q 043837          199 LDPNHT  204 (409)
Q Consensus       199 ~~~~~~  204 (409)
                      .+|.+.
T Consensus       253 ~~~~D~  258 (652)
T KOG2376|consen  253 RNPADE  258 (652)
T ss_pred             hcCCCc
Confidence            877654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.65  E-value=4.4e-14  Score=120.50  Aligned_cols=174  Identities=18%  Similarity=0.125  Sum_probs=151.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH--
Q 043837           18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK--   91 (409)
Q Consensus        18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~--   91 (409)
                      ++..+..++.+|..+...|++++|...+.+.+...+    ....++..|..++..+++++|+..|++ +++..|+++.  
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~-~l~~~p~~~~~~  107 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR-FIRLHPNHPDAD  107 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCcCCCchH
Confidence            445788999999999999999999999999887533    235678899999999999999999999 8888887765  


Q ss_pred             -HHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHhcCChHHHHH
Q 043837           92 -AKLLKVKLLLAA--------KDYASAISETGYLLKEDENNLEAL-----------------LHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        92 -~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~  145 (409)
                       +++.+|.++...        +++++|++.+++++..+|++..++                 ..+|.+++..|++.+|+.
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence             789999999886        889999999999999999986542                 367889999999999999


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP  201 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  201 (409)
                      .+++++...|+++....++..++.++..+         |++++|+.+++......|
T Consensus       188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~l---------g~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       188 RFETVVENYPDTPATEEALARLVEAYLKL---------GLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHCCCCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCC
Confidence            99999999888765556999999999988         999999999888766555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.64  E-value=1.1e-13  Score=132.82  Aligned_cols=198  Identities=11%  Similarity=0.032  Sum_probs=155.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837           21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLL  100 (409)
Q Consensus        21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~  100 (409)
                      ++..+..+-.+....|..++|-......+...........++..     ...++..     .....|.++.++.++|.+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~La~i~   96 (694)
T PRK15179         27 GPTILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAA-----ALPELLD-----YVRRYPHTELFQVLVARAL   96 (694)
T ss_pred             CcHHHhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHh-----hHHHHHH-----HHHhccccHHHHHHHHHHH
Confidence            45556666677777888777755554444433332222222211     1222222     2334788899999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 043837          101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN  180 (409)
Q Consensus       101 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~  180 (409)
                      ...|.+++|...++.++++.|++..++..++.++.+++++++|+..+++++..+|++..   .+..++.++..+      
T Consensus        97 ~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---~~~~~a~~l~~~------  167 (694)
T PRK15179         97 EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---EILLEAKSWDEI------  167 (694)
T ss_pred             HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHh------
Confidence            99999999999999999999999999999999999999999999999999999999998   899999999888      


Q ss_pred             HhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837          181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       181 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                         |++++|+..|++++...|+    ...++..+|.++...|+.++|...|+++++...+-...
T Consensus       168 ---g~~~~A~~~y~~~~~~~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        168 ---GQSEQADACFERLSRQHPE----FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             ---cchHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence               9999999999999998887    67799999999999999999999999999876544444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=6.3e-13  Score=107.03  Aligned_cols=205  Identities=14%  Similarity=0.002  Sum_probs=168.8

Q ss_pred             hCCCchHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCh
Q 043837           67 DSGEYTKPLEYIDKVVLV------FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADH  140 (409)
Q Consensus        67 ~~~~~~~A~~~~~~~~~~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  140 (409)
                      ...+.++.+++... ++.      ..|+.-.++-....+.+..++.+-|..++++.....|.+..+....|..+...+++
T Consensus        24 ~~rnseevv~l~~~-~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSE-VLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHH-HHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence            34455555555554 222      23344555666777888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837          141 DVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK  220 (409)
Q Consensus       141 ~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~  220 (409)
                      ++|+++|+..+.-||.+..   .+...-.+....         |+..+|++.+...++..+.    +.++|..++.+|+.
T Consensus       103 ~~A~e~y~~lL~ddpt~~v---~~KRKlAilka~---------GK~l~aIk~ln~YL~~F~~----D~EAW~eLaeiY~~  166 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPTDTV---IRKRKLAILKAQ---------GKNLEAIKELNEYLDKFMN----DQEAWHELAEIYLS  166 (289)
T ss_pred             hhHHHHHHHHhccCcchhH---HHHHHHHHHHHc---------CCcHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHh
Confidence            9999999999999999987   555555555555         8889999999999999999    67799999999999


Q ss_pred             cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          221 LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE---DWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       221 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                      .++|++|.-++++.+-+.|.++..+..+|.+++-+|   +++-|.++|.++++++|.+......+-.+-..
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998876   67789999999999999776665555444433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.63  E-value=1.5e-13  Score=112.60  Aligned_cols=121  Identities=18%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCC--hHHHHH
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY-YYLAD--HDVAQR  145 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~  145 (409)
                      ++.++++..+.+ ++..+|+++..|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|..
T Consensus        53 ~~~~~~i~~l~~-~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         53 QTPEAQLQALQD-KIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             hhHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            444555555555 55556666666666666666666666666666666666666666666666543 44444  355666


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      .++++++.+|++..   ++..++..+...         |++++|+.++++++++.|.
T Consensus       132 ~l~~al~~dP~~~~---al~~LA~~~~~~---------g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        132 MIDKALALDANEVT---ALMLLASDAFMQ---------ADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHhCCCChh---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Confidence            66666666665555   555555555544         5555555555555555554

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=1e-15  Score=136.77  Aligned_cols=67  Identities=54%  Similarity=0.789  Sum_probs=62.5

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..+||++|+|+++++.++|+++|+++|++||||+++.  ..|+++|++|++||++|+||+||..||+..
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~~YD~~G   69 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRKQYDQFG   69 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence            3689999999999999999999999999999999874  578899999999999999999999999954

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=5.4e-16  Score=138.57  Aligned_cols=67  Identities=49%  Similarity=0.818  Sum_probs=62.4

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|.++++.+||+++||++|++||||+++.. .+++++|++|++||++|+||++|..||+..
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G   69 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYG   69 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence            5899999999999999999999999999999998754 468999999999999999999999999954

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.62  E-value=3e-13  Score=133.57  Aligned_cols=266  Identities=11%  Similarity=-0.019  Sum_probs=192.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      |++++|...|++.   .+.+..+|..+...|.+.|++++|...+......  .++...+......+.+.|++++|.+++.
T Consensus       273 g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~  349 (697)
T PLN03081        273 GDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA  349 (697)
T ss_pred             CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            6778888888765   3456778888888888888888888888777552  2233344445556777888888888888


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc--cCCCc
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR--LDPEH  157 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~  157 (409)
                      .+....-+.+..++..+...|.+.|++++|...|++..+  | +...|..+...|...|+.++|++.|++...  ..|+.
T Consensus       350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~  426 (697)
T PLN03081        350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH  426 (697)
T ss_pred             HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence            733333356677888888888888888888888887754  2 456788888888888888888888888776  34554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      .    .+..+...+...         |..++|..+|+...+..+-.|  +...|..+..++.+.|++++|.+.+++. ..
T Consensus       427 ~----T~~~ll~a~~~~---------g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~  490 (697)
T PLN03081        427 V----TFLAVLSACRYS---------GLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRRA-PF  490 (697)
T ss_pred             H----HHHHHHHHHhcC---------CcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC-CC
Confidence            4    345554555444         888888888888875322211  3456777888888889998888887764 23


Q ss_pred             ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          238 NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       238 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      .| +...|..+..++...|+++.|...+++++++.|++...+..+..++...+
T Consensus       491 ~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G  542 (697)
T PLN03081        491 KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG  542 (697)
T ss_pred             CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC
Confidence            33 45567888888888889999988888888888887766666666554443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.62  E-value=2.6e-14  Score=110.62  Aligned_cols=129  Identities=25%  Similarity=0.277  Sum_probs=117.8

Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                      ..+++++..+|++..   ....++.++...         +++++|+..+++++..+|.    +..++..+|.++...+++
T Consensus         4 ~~~~~~l~~~p~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~~~~   67 (135)
T TIGR02552         4 ATLKDLLGLDSEQLE---QIYALAYNLYQQ---------GRYDEALKLFQLLAAYDPY----NSRYWLGLAACCQMLKEY   67 (135)
T ss_pred             hhHHHHHcCChhhHH---HHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHH
Confidence            468899999999887   777888887777         9999999999999999999    778999999999999999


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      ++|+..+++++..+|+++..++.+|.++...|++++|+..++++++++|++........++...+
T Consensus        68 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        68 EEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988777666665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.61  E-value=1.3e-13  Score=133.12  Aligned_cols=239  Identities=13%  Similarity=0.059  Sum_probs=176.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDS-GEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~   80 (409)
                      +++++|+..++.+++.+|+...+|+.+|.++.+.+++.++...                .+...+.. .++ .+++++..
T Consensus        45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~~~~~~~~~-~~ve~~~~  107 (906)
T PRK14720         45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------NLIDSFSQNLKW-AIVEHICD  107 (906)
T ss_pred             CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh----------------hhhhhcccccch-hHHHHHHH
Confidence            6778888888888888888888888888888877776554322                22222222 234 55555555


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       .+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+|+...      
T Consensus       108 -~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~------  179 (906)
T PRK14720        108 -KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF------  179 (906)
T ss_pred             -HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH------
Confidence             44456777789999999999999999999999999999999999999999999999 9999999999987751      


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc----------------hHHHHHHHHHHHHHcCCh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH----------------NVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------------~~~~~~~la~~~~~~~~~  224 (409)
                                          +..++|.++.+++.+.+..+|++...                ...++.-+-.+|...++|
T Consensus       180 --------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~  239 (906)
T PRK14720        180 --------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW  239 (906)
T ss_pred             --------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence                                11166777777777777777764321                233445555888899999


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHH
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS---PQDMNIREALMRAEKA  288 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~  288 (409)
                      ++++..++.+++.+|.+..+...++.||.  +.|.. ...++..+++.   .....+...+......
T Consensus       240 ~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~  303 (906)
T PRK14720        240 DEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKN  303 (906)
T ss_pred             hHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence            99999999999999999999999999998  44443 44555555443   3334455555555544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.61  E-value=1.1e-14  Score=125.79  Aligned_cols=259  Identities=17%  Similarity=0.124  Sum_probs=182.9

Q ss_pred             CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADP-TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      +|+|..++..++ ....+| ...+..+.+.+++..+|+++..+......-  .+........|..+....+-+.++..+.
T Consensus        14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~   90 (290)
T PF04733_consen   14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKESALEELK   90 (290)
T ss_dssp             TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHH
T ss_pred             hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchHHHHHHHH
Confidence            588999997777 333344 345677888999999999876544332211  1111111222222222345566676665


Q ss_pred             HHHHhhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837           80 KVVLVFSP-ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus        80 ~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      ..+....+ .++.+....|.++...|++++|++.+.+.     .+.+.......++...++++.|.+.++.+.+.+.+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~  165 (290)
T PF04733_consen   91 ELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI  165 (290)
T ss_dssp             HCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH
T ss_pred             HHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH
Confidence            52222222 35667777888999999999999988865     5678888899999999999999999999998877654


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN  238 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  238 (409)
                           ...++..+..+..+     .+++.+|...|++..+..+.    ++.++..++.|++.+|+|++|...+.+++..+
T Consensus       166 -----l~qLa~awv~l~~g-----~e~~~~A~y~f~El~~~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~  231 (290)
T PF04733_consen  166 -----LTQLAEAWVNLATG-----GEKYQDAFYIFEELSDKFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD  231 (290)
T ss_dssp             -----HHHHHHHHHHHHHT-----TTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred             -----HHHHHHHHHHHHhC-----chhHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence                 34444444333211     14799999999998887776    67789999999999999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhCCCcHHHHHH
Q 043837          239 EELIEALVQRGEAKLLTEDW-EGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       239 p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      |++++++.+++.+...+|+. +.+.+++.+....+|+++-+...
T Consensus       232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999999999998 66778888888899998775543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.61  E-value=1.1e-14  Score=124.77  Aligned_cols=282  Identities=18%  Similarity=0.131  Sum_probs=208.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhCC
Q 043837            1 MKHYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDSG   69 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~   69 (409)
                      +|++...+..|+.+++...++.    .+|..+|.+|..+++|++|+.+-...+...       -.+.+.-+.+..+--.|
T Consensus        30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G  109 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG  109 (639)
T ss_pred             ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence            4788899999999999987654    568899999999999999987765544422       22333445566677789


Q ss_pred             CchHHHHHHHHHHHhh----C--CCcHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhhCCCC
Q 043837           70 EYTKPLEYIDKVVLVF----S--PACSKAKLLKVKLLLAAKD--------------------YASAISETGYLLKEDENN  123 (409)
Q Consensus        70 ~~~~A~~~~~~~~~~~----~--p~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~al~~~p~~  123 (409)
                      .|++|+.+..+ -+.+    .  -....+++++|.+|...|+                    ++.|.++|..-+++....
T Consensus       110 ~fdeA~~cc~r-hLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l  188 (639)
T KOG1130|consen  110 AFDEALTCCFR-HLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL  188 (639)
T ss_pred             ccchHHHHHHH-HhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998876 2222    1  1246789999999998775                    345556666555554332


Q ss_pred             ------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH
Q 043837          124 ------LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK  194 (409)
Q Consensus       124 ------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~  194 (409)
                            ..++-++|..|+.+|+|+.|+..-+.-|.+...   ......++.+++.++..+         |+++.|+++|+
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl---------g~fe~A~ehYK  259 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL---------GNFELAIEHYK  259 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh---------cccHhHHHHHH
Confidence                  236778999999999999999998887776443   333456888999999888         99999999999


Q ss_pred             HHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHHHHHHHH
Q 043837          195 AALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEGAVEDLK  266 (409)
Q Consensus       195 ~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~  266 (409)
                      ..+.+.-  .+....+...+.+|..|.-..++++||.+.++-+.+..      ....+++.+|.++-.+|..++|+.+.+
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            8876432  23333677889999999999999999999999887643      346788999999999999999999888


Q ss_pred             HHHhhC----CCc--HHHHHHHHHHHHHHhhc
Q 043837          267 SAAQQS----PQD--MNIREALMRAEKALKMS  292 (409)
Q Consensus       267 ~al~~~----p~~--~~~~~~l~~~~~~~~~~  292 (409)
                      +.+++.    ...  ...+..|......+.+.
T Consensus       340 ~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  340 LHLRSSLEVNDTSGELTARDNLSDLILELGQE  371 (639)
T ss_pred             HHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence            877653    222  23445555555555543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=4.3e-12  Score=108.83  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=104.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      |+|.+|.....+.-+..+...-++..-+.+-.+.|+++.|..+..++-+.  ..........+..++.+++++.|..-.+
T Consensus        98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~  177 (400)
T COG3071          98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD  177 (400)
T ss_pred             CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            78999999999998888888888888899999999999999988887765  4556667888999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE  119 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  119 (409)
                      + ++...|.++.+......+|...|+|......+.+.-+.
T Consensus       178 ~-ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka  216 (400)
T COG3071         178 Q-LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA  216 (400)
T ss_pred             H-HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence            9 89999999999999999999999999988888776553

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.60  E-value=2.2e-13  Score=110.62  Aligned_cols=169  Identities=19%  Similarity=0.114  Sum_probs=156.0

Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      ....+|.+..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++..+.|++..  
T Consensus        59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~--  135 (257)
T COG5010          59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE--  135 (257)
T ss_pred             HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh--
Confidence            46668999899 999999999999999999999999999999998888999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                       .|..++.++...         |++++|...|.+++++.|+    .+.+..|+|..+.-.|+++.|..++..+....+.+
T Consensus       136 -~~~~lgaaldq~---------Gr~~~Ar~ay~qAl~L~~~----~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad  201 (257)
T COG5010         136 -AWNLLGAALDQL---------GRFDEARRAYRQALELAPN----EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD  201 (257)
T ss_pred             -hhhHHHHHHHHc---------cChhHHHHHHHHHHHhccC----CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence             999999999998         9999999999999999999    56699999999999999999999999999888889


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKS  267 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~  267 (409)
                      ..+..+++.+....|++.+|.....+
T Consensus       202 ~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         202 SRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             hHHHHHHHHHHhhcCChHHHHhhccc
Confidence            99999999999999999999876643

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=1.2e-12  Score=110.24  Aligned_cols=254  Identities=13%  Similarity=0.049  Sum_probs=168.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH---------------------------HHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS---------------------------QLL   53 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---------------------------~~~   53 (409)
                      ||+|++|+..|+-+.+.+.-+.+.+.++|.|+.-+|.|.+|.....++-.                           ...
T Consensus        70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD  149 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD  149 (557)
T ss_pred             hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence            68999999999999888777889999999999999999999444333111                           011


Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      ..+..+..|...+..-.|++||..|.+ ++..+|.....-..+|.||.++.-|+-+.+.+.--++..|+++.+...++..
T Consensus       150 ~~EdqLSLAsvhYmR~HYQeAIdvYkr-vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn  228 (557)
T KOG3785|consen  150 TLEDQLSLASVHYMRMHYQEAIDVYKR-VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACN  228 (557)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            224445667777777899999999999 8899999999999999999999999999999998888888877655555444


Q ss_pred             HH------------------------------------------------------------------hcCChHHHHHHH
Q 043837          134 YY------------------------------------------------------------------YLADHDVAQRHF  147 (409)
Q Consensus       134 ~~------------------------------------------------------------------~~~~~~~A~~~~  147 (409)
                      .+                                                                  .+++..+|+..+
T Consensus       229 ~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~  308 (557)
T KOG3785|consen  229 LFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLC  308 (557)
T ss_pred             HhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHH
Confidence            43                                                                  334444443333


Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHHHHHH----------------------------------HHhhHHhcCCHHHHHHHH
Q 043837          148 QKGLRLDPEHSELKKAYFALKNLLKKTK----------------------------------SAEDNVSKGKLRVAVEDF  193 (409)
Q Consensus       148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~----------------------------------~~~~~~~~~~~~~A~~~~  193 (409)
                      +   .++|..+.   -+...+.+...+.                                  .+..++-..++++.+.++
T Consensus       309 K---dl~PttP~---EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl  382 (557)
T KOG3785|consen  309 K---DLDPTTPY---EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL  382 (557)
T ss_pred             h---hcCCCChH---HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            2   24555444   3333333333221                                  111112224555555555


Q ss_pred             HHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-hhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837          194 KAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-EELIEALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       194 ~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~  265 (409)
                      +..-....+    +....++++.++...|++.+|.+.|-++-..+ .+.......+|+||+..++.+-|-..+
T Consensus       383 nSi~sYF~N----dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  383 NSIESYFTN----DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM  451 (557)
T ss_pred             HHHHHHhcC----cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            554444444    33366677777777777777777776654433 233444556777777777777766554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=1.6e-12  Score=104.67  Aligned_cols=179  Identities=20%  Similarity=0.153  Sum_probs=160.5

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 043837           60 DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLAD  139 (409)
Q Consensus        60 ~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  139 (409)
                      ...+..+..++.+-|..++++ +....|.+..+-...|..+...|++++|+++|+..++-+|.+...+-..-.+...+|+
T Consensus        57 qV~IAAld~~~~~lAq~C~~~-L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   57 QVFIAALDTGRDDLAQKCINQ-LRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK  135 (289)
T ss_pred             HHHHHHHHhcchHHHHHHHHH-HHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence            345667778999999999998 5556699999999999999999999999999999999999999999988888999999


Q ss_pred             hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837          140 HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV  219 (409)
Q Consensus       140 ~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~  219 (409)
                      .-+|++.+..-++..+.+.+   +|..++.+|...         ++|++|.-++++++-+.|.    ++.++..+|.+++
T Consensus       136 ~l~aIk~ln~YL~~F~~D~E---AW~eLaeiY~~~---------~~f~kA~fClEE~ll~~P~----n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  136 NLEAIKELNEYLDKFMNDQE---AWHELAEIYLSE---------GDFEKAAFCLEELLLIQPF----NPLYFQRLAEVLY  199 (289)
T ss_pred             cHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhH---------hHHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHH
Confidence            99999999999999999999   999999999888         9999999999999999999    6778889999988


Q ss_pred             HcC---ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837          220 KLG---RGKDALSSCTEALNINEELIEALVQRGEAKLLT  255 (409)
Q Consensus       220 ~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  255 (409)
                      -+|   ++.-|.++|.++++++|.+..+++.+-.|-...
T Consensus       200 t~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  200 TQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence            776   567899999999999998888888776665433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.60  E-value=1.3e-13  Score=132.21  Aligned_cols=155  Identities=12%  Similarity=0.037  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837          106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK  185 (409)
Q Consensus       106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (409)
                      ..+++..+.......|.+++++.+||.+....|.+++|...++.++++.|++..   ++..++.++...         ++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---a~~~~a~~L~~~---------~~  135 (694)
T PRK15179         68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---AFILMLRGVKRQ---------QG  135 (694)
T ss_pred             hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHh---------cc
Confidence            344444555556678999999999999999999999999999999999999999   999999999998         99


Q ss_pred             HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837          186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  265 (409)
                      +++|+..+++++..+|+    +...++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|
T Consensus       136 ~eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~  211 (694)
T PRK15179        136 IEAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL  211 (694)
T ss_pred             HHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999    78899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCcH
Q 043837          266 KSAAQQSPQDM  276 (409)
Q Consensus       266 ~~al~~~p~~~  276 (409)
                      ++++....+-.
T Consensus       212 ~~a~~~~~~~~  222 (694)
T PRK15179        212 QAGLDAIGDGA  222 (694)
T ss_pred             HHHHHhhCcch
Confidence            99999876543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.59  E-value=6.4e-12  Score=116.45  Aligned_cols=254  Identities=15%  Similarity=0.084  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837           22 SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLL  100 (409)
Q Consensus        22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~  100 (409)
                      .++++..+.++...|++++|+..+........+. ...-.+|..+++.|++++|...|.. ++..+|++...+..+..+.
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~-Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRE-LIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCcHHHHHHHHHHH
Confidence            4556666677777777776666665544433332 2233456666666666666666666 6666666666666666665


Q ss_pred             HHcc-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          101 LAAK-----DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDV-AQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       101 ~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      ....     +.+.-...|++.....|....+ ..+...+..-.++.. +..++...+..  .-+.   ...++..+|...
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPs---lF~~lk~Ly~d~  156 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRK--GVPS---LFSNLKPLYKDP  156 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhc--CCch---HHHHHHHHHcCh
Confidence            2222     3455556666666666553222 112222222122222 22333333322  2222   444444444322


Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccC----------CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALD----------PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      .+.      .-..+-+.-|...++..          ...|....++++.+|..|...|++++|+++++++|+..|..++.
T Consensus       157 ~K~------~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el  230 (517)
T PF12569_consen  157 EKA------AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL  230 (517)
T ss_pred             hHH------HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence            000      00111122222222211          11222235677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                      ++..|.++.+.|++.+|.+.++.+-++++.|..+.....+....
T Consensus       231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  231 YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998877766655443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.59  E-value=8.7e-13  Score=124.56  Aligned_cols=205  Identities=16%  Similarity=0.127  Sum_probs=173.2

Q ss_pred             CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043837           68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHF  147 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  147 (409)
                      ..+...|+..+-+ ++.++|....++..+|.+|...-+...|..+|.+|.++|+.+..+.-..+..|....+++.|....
T Consensus       471 rK~~~~al~ali~-alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  471 RKNSALALHALIR-ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hhhHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence            3557888888888 889999999999999999998889999999999999999999999999999999999999999886


Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837          148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA  227 (409)
Q Consensus       148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  227 (409)
                      -.+-+.+|.... ...|..+|..+         ++.++...|+..++.+++.+|.    +..+|..+|.+|...|++..|
T Consensus       550 l~~~qka~a~~~-k~nW~~rG~yy---------Lea~n~h~aV~~fQsALR~dPk----D~n~W~gLGeAY~~sGry~~A  615 (1238)
T KOG1127|consen  550 LRAAQKAPAFAC-KENWVQRGPYY---------LEAHNLHGAVCEFQSALRTDPK----DYNLWLGLGEAYPESGRYSHA  615 (1238)
T ss_pred             HHHhhhchHHHH-Hhhhhhccccc---------cCccchhhHHHHHHHHhcCCch----hHHHHHHHHHHHHhcCceehH
Confidence            666665554332 11333344444         4449999999999999999999    788999999999999999999


Q ss_pred             HHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       228 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      ++.|.++..++|.+....+..+.+....|+|.+|+..+...+............+..+..
T Consensus       616 lKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~i  675 (1238)
T KOG1127|consen  616 LKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVI  675 (1238)
T ss_pred             HHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            999999999999999999999999999999999999999998877665555544444443

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=4.2e-15  Score=133.81  Aligned_cols=67  Identities=49%  Similarity=0.769  Sum_probs=62.6

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|+++++.+||+++||+++++||||+++.. ..++++|++|++||++|+||+||+.||+..
T Consensus         9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G   75 (392)
T PRK14279          9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETR   75 (392)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence            6999999999999999999999999999999998754 578899999999999999999999999953

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.58  E-value=1.5e-12  Score=128.67  Aligned_cols=247  Identities=12%  Similarity=0.007  Sum_probs=202.8

Q ss_pred             CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--HHHHHHHHHHHHHHhCCCchHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADP-TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--LQAQSTFDSALKLYDSGEYTKPLEY   77 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~A~~~   77 (409)
                      .|++++|+..|++..+..- -+...+..+..++.+.|++++|...+...+...  ......-.....+.+.|++++|..+
T Consensus       303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v  382 (697)
T PLN03081        303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV  382 (697)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence            3789999999999877532 245688899999999999999998888776642  2223334456667889999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc--
Q 043837           78 IDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL--  153 (409)
Q Consensus        78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--  153 (409)
                      |++ +..   .+..+|..+...|.+.|+.++|++.|++.++.  .| +..++..+..++...|..++|..+|+...+.  
T Consensus       383 f~~-m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g  457 (697)
T PLN03081        383 FDR-MPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR  457 (697)
T ss_pred             HHh-CCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence            987 432   35678999999999999999999999998874  44 4667888889999999999999999998753  


Q ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837          154 -DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT  232 (409)
Q Consensus       154 -~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  232 (409)
                       .|+..    .|..+...+...         |++++|.+.+++. ...|     +..+|..+..++...|+++.|...++
T Consensus       458 ~~p~~~----~y~~li~~l~r~---------G~~~eA~~~~~~~-~~~p-----~~~~~~~Ll~a~~~~g~~~~a~~~~~  518 (697)
T PLN03081        458 IKPRAM----HYACMIELLGRE---------GLLDEAYAMIRRA-PFKP-----TVNMWAALLTACRIHKNLELGRLAAE  518 (697)
T ss_pred             CCCCcc----chHhHHHHHHhc---------CCHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence             34432    566677777666         9999999998764 2334     35678999999999999999999999


Q ss_pred             HHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          233 EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       233 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      +.+++.|++...|..++.+|...|++++|.+.++...+.
T Consensus       519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999988765

>PLN03077 Protein ECB2; Provisional

Probab=99.57  E-value=1.1e-11  Score=125.38  Aligned_cols=167  Identities=13%  Similarity=0.097  Sum_probs=75.3

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHHHHHHH
Q 043837           99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR--LDPEHSELKKAYFALKNLLKKTKS  176 (409)
Q Consensus        99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~l~~~~~~~~~  176 (409)
                      .|.+.|+.++|...|+..    +.+...|..+...|...|+.++|+..|++...  ..|+...    +..+-..+...  
T Consensus       533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T----~~~ll~a~~~~--  602 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT----FISLLCACSRS--  602 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc----HHHHHHHHhhc--
Confidence            333444444444444432    22344455555555555555555555555443  2333332    22222222222  


Q ss_pred             HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837          177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE  256 (409)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  256 (409)
                             |.+++|..+|+...+..+-.|  +...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-.++...+
T Consensus       603 -------g~v~ea~~~f~~M~~~~gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~  671 (857)
T PLN03077        603 -------GMVTQGLEYFHSMEEKYSITP--NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHR  671 (857)
T ss_pred             -------ChHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC
Confidence                   555555555555542211111  2344555555555555555555555543 22332 333444444444455


Q ss_pred             CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          257 DWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       257 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      +.+.|....+++++++|++...+..+..++
T Consensus       672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y  701 (857)
T PLN03077        672 HVELGELAAQHIFELDPNSVGYYILLCNLY  701 (857)
T ss_pred             ChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence            555555555555555555555444444443

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=6.7e-15  Score=131.73  Aligned_cols=67  Identities=54%  Similarity=0.872  Sum_probs=62.4

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|.++++.++|+++|++++++||||+++.. .+++++|++|++||++|+||++|..||+..
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G   70 (372)
T PRK14286          4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFG   70 (372)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence            5899999999999999999999999999999998754 468899999999999999999999999854

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=5.2e-15  Score=132.38  Aligned_cols=66  Identities=47%  Similarity=0.884  Sum_probs=61.9

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|.++++.+||+++|++++++||||+++.  ..++++|++|++||++|+||++|..||+..
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G   69 (371)
T PRK14287          4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFG   69 (371)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHhhC
Confidence            589999999999999999999999999999999864  578899999999999999999999999954

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.57  E-value=1.3e-14  Score=121.59  Aligned_cols=103  Identities=28%  Similarity=0.425  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHH
Q 043837          168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQ  247 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  247 (409)
                      .........+..++..|.+++|++.+..++.++|.    .+.++..++.+++++++...|+..|..+++++|+....|..
T Consensus       112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~----~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf  187 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPP----LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF  187 (377)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhcccccccccCCc----hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence            33345556778888999999999999999999999    78899999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          248 RGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       248 la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      ++.+...+|+|++|..++..+.+++-+
T Consensus       188 rg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  188 RGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999998755

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.55  E-value=1.5e-12  Score=119.49  Aligned_cols=223  Identities=18%  Similarity=0.169  Sum_probs=177.7

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837           19 PTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVK   98 (409)
Q Consensus        19 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~   98 (409)
                      |........++.++..+|-...|+..+++.       ..+-....+|...|+..+|..+..+ .++ .|+++..|..+|.
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q-~le-k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQ-ELE-KDPDPRLYCLLGD  465 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHH-Hhc-CCCcchhHHHhhh
Confidence            344566778899999999988877766543       3344566677778888888888876 555 6777888888777


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHh
Q 043837           99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE  178 (409)
Q Consensus        99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~  178 (409)
                      +....-=|++|.++.+..      +..+...+|......+++.++..+++..++++|-...   .|+.+|.+..++    
T Consensus       466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---~wf~~G~~ALql----  532 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---TWFGLGCAALQL----  532 (777)
T ss_pred             hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---HHHhccHHHHHH----
Confidence            766665566666555543      3446677777777788899999999999999888888   888888888888    


Q ss_pred             hHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837          179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW  258 (409)
Q Consensus       179 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  258 (409)
                           ++++.|+..|..++.++|+    +...|.|++.+|...++-.+|...++++++.+-.+...|.+.-.+....|.+
T Consensus       533 -----ek~q~av~aF~rcvtL~Pd----~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~  603 (777)
T KOG1128|consen  533 -----EKEQAAVKAFHRCVTLEPD----NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF  603 (777)
T ss_pred             -----hhhHHHHHHHHHHhhcCCC----chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH
Confidence                 8899999999999999998    7778999999999999999999999999988888888888888888899999


Q ss_pred             HHHHHHHHHHHhhC
Q 043837          259 EGAVEDLKSAAQQS  272 (409)
Q Consensus       259 ~~A~~~~~~al~~~  272 (409)
                      ++|++.+.+.+.+.
T Consensus       604 eda~~A~~rll~~~  617 (777)
T KOG1128|consen  604 EDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999988887764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.55  E-value=2.3e-13  Score=105.33  Aligned_cols=116  Identities=26%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH
Q 043837          112 ETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE  191 (409)
Q Consensus       112 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~  191 (409)
                      .+++++..+|++..+.+.+|.++...+++++|+..+++++..+|.+..   ++..++.++...         +++++|+.
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~---------~~~~~A~~   72 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---YWLGLAACCQML---------KEYEEAID   72 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHH---------HHHHHHHH
Confidence            344555555555555555555555555555555555555555555544   455555555444         55555555


Q ss_pred             HHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837          192 DFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE  243 (409)
Q Consensus       192 ~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  243 (409)
                      .+++++..+|+    +...++.+|.++...|++++|+..++++++++|++..
T Consensus        73 ~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        73 AYALAAALDPD----DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            55555555555    3445555555555555555555555555555554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.55  E-value=3e-12  Score=123.94  Aligned_cols=237  Identities=14%  Similarity=0.115  Sum_probs=162.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837           18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKV   97 (409)
Q Consensus        18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a   97 (409)
                      +|.+..++..+...+...+++++|...+..                                  .+..+|+...+++.+|
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~----------------------------------~l~~~P~~i~~yy~~G   72 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEE----------------------------------HLKEHKKSISALYISG   72 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------HHHhCCcceehHHHHH
Confidence            455666666666665555555555444443                                  4444555555555555


Q ss_pred             HHHHHccCHHHH-----------------HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           98 KLLLAAKDYASA-----------------ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        98 ~~~~~~~~~~~A-----------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                      .++.+.+++.++                 ++++...+...+.+..+++.+|.||-.+|++++|...++++++++|+++. 
T Consensus        73 ~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~-  151 (906)
T PRK14720         73 ILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE-  151 (906)
T ss_pred             HHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-
Confidence            555544444443                 44444444445555588999999999999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                        ++.+++..+...          +.++|+.++.+|+..                  +...+++..+.+++.+.+..+|+
T Consensus       152 --aLNn~AY~~ae~----------dL~KA~~m~~KAV~~------------------~i~~kq~~~~~e~W~k~~~~~~~  201 (906)
T PRK14720        152 --IVKKLATSYEEE----------DKEKAITYLKKAIYR------------------FIKKKQYVGIEEIWSKLVHYNSD  201 (906)
T ss_pred             --HHHHHHHHHHHh----------hHHHHHHHHHHHHHH------------------HHhhhcchHHHHHHHHHHhcCcc
Confidence              888888877542          788888888887764                  44455667777777777777776


Q ss_pred             cHHH--------------------HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc--chhhhh
Q 043837          241 LIEA--------------------LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS--KRKDWY  298 (409)
Q Consensus       241 ~~~~--------------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~~~~~  298 (409)
                      +.+.                    +.-+-.+|...++|++++..++.+++++|+|..++..+..++...=..  .-.++.
T Consensus       202 d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l  281 (906)
T PRK14720        202 DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYL  281 (906)
T ss_pred             cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHH
Confidence            5433                    333447888999999999999999999999999999999998732221  124556


Q ss_pred             hhhccccc-CCHHHHHHHHHHH
Q 043837          299 KILGVSKT-ASISEIKRAYKKL  319 (409)
Q Consensus       299 ~~l~~~~~-~~~~e~~~~y~~~  319 (409)
                      ++.++... .........|.+.
T Consensus       282 ~~s~l~~~~~~~~~~i~~fek~  303 (906)
T PRK14720        282 KMSDIGNNRKPVKDCIADFEKN  303 (906)
T ss_pred             HHhccccCCccHHHHHHHHHHH
Confidence            66666665 4456666667664

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1.6e-14  Score=129.44  Aligned_cols=69  Identities=61%  Similarity=1.006  Sum_probs=64.3

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..+||++|+|+++++.+||+++|++++++||||+++.....++++|++|++||++|+||++|..||+..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g   71 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG   71 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence            368999999999999999999999999999999987765679999999999999999999999999854

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1.8e-14  Score=129.65  Aligned_cols=67  Identities=55%  Similarity=0.913  Sum_probs=62.5

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+..
T Consensus         4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G   70 (380)
T PRK14297          4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQKKAQYDQFG   70 (380)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence            5899999999999999999999999999999998754 468899999999999999999999999954

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.53  E-value=2.2e-11  Score=112.93  Aligned_cols=255  Identities=18%  Similarity=0.165  Sum_probs=183.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHH------hCCCchHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLY------DSGEYTKP   74 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~~~A   74 (409)
                      .|++++|++++.+....-++....+..+|.++..+|++++|...+...+...+....+|..-....      ...+.+.-
T Consensus        17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~   96 (517)
T PF12569_consen   17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL   96 (517)
T ss_pred             CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence            478999999999988888888899999999999999999999999998887666655555443333      11234555


Q ss_pred             HHHHHHHHHhhCCCc--------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHH---hh
Q 043837           75 LEYIDKVVLVFSPAC--------------------------------SKAKLLKVKLLLAAKDYASAISETGYLL---KE  119 (409)
Q Consensus        75 ~~~~~~~~~~~~p~~--------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~  119 (409)
                      ..+|++ +....|.+                                |.++..+-.+|....+..-....+...+   +.
T Consensus        97 ~~~y~~-l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~  175 (517)
T PF12569_consen   97 LELYDE-LAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES  175 (517)
T ss_pred             HHHHHH-HHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence            666665 33333422                                2222222222222222111122222221   11


Q ss_pred             ------------CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837          120 ------------DENN--LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK  185 (409)
Q Consensus       120 ------------~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (409)
                                  .|..  .++++.++..|...|++++|+.++++|+...|+.++   .+...+.++...         |+
T Consensus       176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---ly~~KarilKh~---------G~  243 (517)
T PF12569_consen  176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---LYMTKARILKHA---------GD  243 (517)
T ss_pred             cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHC---------CC
Confidence                        1111  245688999999999999999999999999999998   999999999988         99


Q ss_pred             HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--hh-------cHHHHHHHHHHHHhcc
Q 043837          186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--EE-------LIEALVQRGEAKLLTE  256 (409)
Q Consensus       186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-------~~~~~~~la~~~~~~~  256 (409)
                      +.+|...++.+-.+++.    +-.+-...+..+++.|+.++|.+.+..-...+  |.       ........|.+|...|
T Consensus       244 ~~~Aa~~~~~Ar~LD~~----DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~  319 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLA----DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG  319 (517)
T ss_pred             HHHHHHHHHHHHhCChh----hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998    44466667778889999999999988876654  21       1233456799999999


Q ss_pred             CHHHHHHHHHHHHhhC
Q 043837          257 DWEGAVEDLKSAAQQS  272 (409)
Q Consensus       257 ~~~~A~~~~~~al~~~  272 (409)
                      ++..|+..|..+.+..
T Consensus       320 ~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  320 DYGLALKRFHAVLKHF  335 (517)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999888764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=2.8e-14  Score=128.77  Aligned_cols=67  Identities=60%  Similarity=0.955  Sum_probs=62.3

Q ss_pred             hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      +||++|+|+++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+...
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   68 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRYGK   68 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence            799999999999999999999999999999998764 4688999999999999999999999999543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=2.9e-14  Score=127.80  Aligned_cols=67  Identities=57%  Similarity=0.987  Sum_probs=62.3

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..+||++|+|.++++.+||+++|++++++||||+++.  ..++++|++|++||++|+||++|..||+..
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G   70 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFG   70 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence            3689999999999999999999999999999999864  568899999999999999999999999854

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=3.2e-14  Score=128.55  Aligned_cols=67  Identities=60%  Similarity=1.016  Sum_probs=62.2

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|++.++.++|+++|++++++||||++... ..++++|++|++||++|+||++|..||...
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g   69 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRRRYDQFG   69 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            5899999999999999999999999999999998754 468889999999999999999999999854

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=2e-14  Score=128.35  Aligned_cols=68  Identities=59%  Similarity=0.927  Sum_probs=62.7

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      .+||++|+|.+.++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+...
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~   70 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGH   70 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence            5899999999999999999999999999999998754 5688899999999999999999999999543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.52  E-value=3.7e-12  Score=103.64  Aligned_cols=170  Identities=22%  Similarity=0.180  Sum_probs=152.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC
Q 043837          105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG  184 (409)
Q Consensus       105 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (409)
                      +...+...+-.....+|++..+ ..++..+...|+-+.+..+..++....|.+..   .+..++......         |
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~---ll~~~gk~~~~~---------g  114 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE---LLAAQGKNQIRN---------G  114 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH---HHHHHHHHHHHh---------c
Confidence            3344777777888889999999 99999999999999999999999999999887   555555555555         9


Q ss_pred             CHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHH
Q 043837          185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVED  264 (409)
Q Consensus       185 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  264 (409)
                      ++..|+..+.++..+.|+    +..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..+
T Consensus       115 ~~~~A~~~~rkA~~l~p~----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l  190 (257)
T COG5010         115 NFGEAVSVLRKAARLAPT----DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL  190 (257)
T ss_pred             chHHHHHHHHHHhccCCC----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence            999999999999999999    7889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          265 LKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       265 ~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      +..+....+.+..+...+..+......
T Consensus       191 ll~a~l~~~ad~~v~~NLAl~~~~~g~  217 (257)
T COG5010         191 LLPAYLSPAADSRVRQNLALVVGLQGD  217 (257)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence            999999999899999998887665543

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=2.4e-14  Score=128.25  Aligned_cols=67  Identities=66%  Similarity=1.017  Sum_probs=62.4

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|+++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||.+|..||+..
T Consensus         4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g   70 (373)
T PRK14301          4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFG   70 (373)
T ss_pred             CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence            6899999999999999999999999999999998764 568889999999999999999999999854

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=3.9e-14  Score=127.46  Aligned_cols=65  Identities=54%  Similarity=0.956  Sum_probs=61.3

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      .+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+
T Consensus         9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            5899999999999999999999999999999998654 4689999999999999999999999997

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.52  E-value=7.6e-13  Score=100.58  Aligned_cols=121  Identities=17%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             HccC-CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837          151 LRLD-PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS  229 (409)
Q Consensus       151 l~~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  229 (409)
                      ..++ ++.-+   ..+.++..+...         |++++|...|+-...++|.    +...|++||.|+..+|+|++|+.
T Consensus        27 ~~~~~~~~l~---~lY~~A~~ly~~---------G~l~~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~   90 (157)
T PRK15363         27 LDDDVTQPLN---TLYRYAMQLMEV---------KEFAGAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIY   90 (157)
T ss_pred             HCCChHHHHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHH
Confidence            3444 44444   666666666555         9999999999999999999    88899999999999999999999


Q ss_pred             HHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          230 SCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       230 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      .|.+++.++|+++.++++.|.|++..|+.+.|++.|+.++.....+++......+++.
T Consensus        91 aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~  148 (157)
T PRK15363         91 AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK  148 (157)
T ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988555444443344433

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=4.1e-14  Score=127.54  Aligned_cols=68  Identities=53%  Similarity=0.901  Sum_probs=62.8

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G   71 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRAQYDQFG   71 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence            36899999999999999999999999999999998754 468899999999999999999999999843

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=5.6e-14  Score=126.39  Aligned_cols=68  Identities=56%  Similarity=0.955  Sum_probs=62.5

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||...
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g   70 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQYG   70 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence            36899999999999999999999999999999998754 458899999999999999999999999854

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=3.5e-14  Score=122.97  Aligned_cols=68  Identities=54%  Similarity=0.794  Sum_probs=62.6

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ..+||++|+|.++++.++|+++|+++++++|||+++.  ..++++|++|++||++|+||++|..||+...
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            3689999999999999999999999999999999864  5788899999999999999999999999543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.50  E-value=1.3e-11  Score=104.30  Aligned_cols=178  Identities=16%  Similarity=0.098  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHH---HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAK---LLKVKLLLAAKDYASAISETGYLLKEDENNL---EAL  127 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~  127 (409)
                      .....|..|...+..|+|++|+..|++ ++...|..+.+.   +.+|.++++.+++++|+..+++.++.+|+++   .++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~-l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEA-LDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            466688999999999999999999999 888999886554   8999999999999999999999999998864   578


Q ss_pred             HHHHHHHHhcC---------------C---hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHH
Q 043837          128 LHRGRAYYYLA---------------D---HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVA  189 (409)
Q Consensus       128 ~~l~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A  189 (409)
                      +.+|.++..++               +   ..+|+..|+..+...|++.-...+...+..+...+               
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l---------------  174 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL---------------  174 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH---------------
Confidence            89998865543               1   24788999999999999887666666665554433               


Q ss_pred             HHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---cHHHHHHHHHHHHhccCHHHHHHHH
Q 043837          190 VEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---LIEALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       190 ~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~  265 (409)
                                        +.--+.+|..|.+.|.|..|+.-++.+++..|+   ..+++..+..+|..+|..++|....
T Consensus       175 ------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~  235 (243)
T PRK10866        175 ------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA  235 (243)
T ss_pred             ------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence                              112234455555555555555555555555443   2455555555565556555555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.50  E-value=1.8e-12  Score=98.50  Aligned_cols=105  Identities=13%  Similarity=0.102  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837           53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR  132 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  132 (409)
                      ......|..|..++..|++++|...|.- +...+|.+...|+++|.|+..+|+|++|+..|.+++.++|+++.+++++|.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~-L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQL-LTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            4567779999999999999999999987 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHccCCCcH
Q 043837          133 AYYYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus       133 ~~~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      |++..|+.+.|.+.|+.++.....++
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhccCh
Confidence            99999999999999999999874444

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=4.2e-14  Score=127.15  Aligned_cols=66  Identities=50%  Similarity=0.806  Sum_probs=61.7

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|.++++.+||+++|++++++||||+++.  ..++++|++|++||++|+||++|..||+..
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G   69 (380)
T PRK14276          4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYG   69 (380)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence            589999999999999999999999999999999874  468889999999999999999999999854

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=8.9e-14  Score=125.65  Aligned_cols=69  Identities=58%  Similarity=0.977  Sum_probs=63.2

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ..+||++|+|.+.++.+||+++|+++++++|||+++.. .+++++|++|++||++|+||++|..||.+..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~   72 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH   72 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence            36899999999999999999999999999999998765 4688999999999999999999999998543

>PLN03077 Protein ECB2; Provisional

Probab=99.49  E-value=5e-11  Score=120.72  Aligned_cols=242  Identities=11%  Similarity=0.023  Sum_probs=191.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH--------------------HHHHH--
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ--------------------AQSTF--   59 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------------------~~~~~--   59 (409)
                      |++++|.+.|++..+   .+...|..+...|.+.|++++|+..+.+.+.....                    ....+  
T Consensus       438 g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~  514 (857)
T PLN03077        438 KCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH  514 (857)
T ss_pred             CCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence            678888888887643   34567888888888889999888888776542100                    00000  


Q ss_pred             --------------HHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCC
Q 043837           60 --------------DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DENN  123 (409)
Q Consensus        60 --------------~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~  123 (409)
                                    .....+.+.|+.++|...|+. .    +.+..+|..+...|...|+.++|++.|++..+.  .|+ 
T Consensus       515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-  588 (857)
T PLN03077        515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-H----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-  588 (857)
T ss_pred             HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh-c----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-
Confidence                          112345677999999999987 3    567889999999999999999999999998874  454 


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC
Q 043837          124 LEALLHRGRAYYYLADHDVAQRHFQKGLRL---DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD  200 (409)
Q Consensus       124 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  200 (409)
                      ...+..+-..+...|.+++|..+|+...+.   .|+. .   .|..+..++...         |++++|.+.+++. .+.
T Consensus       589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~---~y~~lv~~l~r~---------G~~~eA~~~~~~m-~~~  654 (857)
T PLN03077        589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-K---HYACVVDLLGRA---------GKLTEAYNFINKM-PIT  654 (857)
T ss_pred             cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-H---HHHHHHHHHHhC---------CCHHHHHHHHHHC-CCC
Confidence            445666667899999999999999998843   4443 3   677777777777         9999999999885 355


Q ss_pred             CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          201 PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       201 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      |+     ..+|..+-.++...++.+.+....+++++++|+++..+..++.+|...|+|++|.+..+...+.
T Consensus       655 pd-----~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        655 PD-----PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            54     5577777777888999999999999999999999999999999999999999999999887653

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=3.9e-14  Score=127.11  Aligned_cols=67  Identities=60%  Similarity=0.902  Sum_probs=62.6

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      .+||++|+|+++++.++|+++|++++++||||++++  ..++++|++|++||++|+||++|..||++..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~   69 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD   69 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence            589999999999999999999999999999999874  5788999999999999999999999999644

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.49  E-value=8.4e-13  Score=118.52  Aligned_cols=113  Identities=23%  Similarity=0.428  Sum_probs=106.9

Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL  254 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  254 (409)
                      ..|..++..++|++|+..|+++++++|+    +..++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            4577778889999999999999999999    778999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          255 TEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       255 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      +|++++|+..|+++++++|++..+...+..+...++.
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999887754

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.48  E-value=6.4e-14  Score=125.82  Aligned_cols=66  Identities=58%  Similarity=0.953  Sum_probs=61.7

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|+++++.++|+++|++++++||||+++.  ..++++|++|++||++|+||++|..||+..
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G   69 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFG   69 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence            589999999999999999999999999999999865  468889999999999999999999999954

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.48  E-value=6.8e-14  Score=126.26  Aligned_cols=64  Identities=50%  Similarity=0.803  Sum_probs=59.3

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..+||++|+|+++++.+||+++||++|++||||++..     .++|++|++||++|+||+||..||+..
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G   90 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEYG   90 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHHHHhhhc
Confidence            4699999999999999999999999999999999753     369999999999999999999999854

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.47  E-value=3e-12  Score=110.87  Aligned_cols=273  Identities=21%  Similarity=0.163  Sum_probs=187.5

Q ss_pred             HHHHHcCChHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHH
Q 043837           30 SVLRQLCRVKARNSVAEK-ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYAS  108 (409)
Q Consensus        30 ~~~~~~g~~~~A~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  108 (409)
                      +-++-+|+|..++..+.. ...........+-.++.++..|+++..+..+..    ..+....+...++..+....+.+.
T Consensus         9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----~~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----SSSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----CCChhHHHHHHHHHHHhCccchHH
Confidence            445678999988866551 122334456667788889999998877665532    234445666777777766567778


Q ss_pred             HHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCH
Q 043837          109 AISETGYLLKEDE--NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL  186 (409)
Q Consensus       109 A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  186 (409)
                      ++..++..+....  .++......|.++...|++++|++.+.+.     .+.+   .......++..+         +++
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE---~~al~Vqi~L~~---------~R~  147 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLE---LLALAVQILLKM---------NRP  147 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHH---HHHHHHHHHHHT---------T-H
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Cccc---HHHHHHHHHHHc---------CCH
Confidence            8887776654332  34556677888999999999999888764     3444   444444555555         999


Q ss_pred             HHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHH
Q 043837          187 RVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG--RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVED  264 (409)
Q Consensus       187 ~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  264 (409)
                      +.|.+.++.+-+.+.+    ...+....+++.+..|  ++.+|...|++.....+.++..+..++.+++.+|+|++|.+.
T Consensus       148 dlA~k~l~~~~~~~eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~  223 (290)
T PF04733_consen  148 DLAEKELKNMQQIDED----SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEEL  223 (290)
T ss_dssp             HHHHHHHHHHHCCSCC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHHHhcCCc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            9999999999998887    5555555666666666  699999999999888888999999999999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC-CCchHHHHHHHHHHH
Q 043837          265 LKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-VDNREEAENKFREIA  343 (409)
Q Consensus       265 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~-~~~~~~a~~~~~~i~  343 (409)
                      ++++++.+|+++++...+..+...+++                 ..+....|....+..||+.. .....+.+..|.++.
T Consensus       224 L~~al~~~~~~~d~LaNliv~~~~~gk-----------------~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~  286 (290)
T PF04733_consen  224 LEEALEKDPNDPDTLANLIVCSLHLGK-----------------PTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAV  286 (290)
T ss_dssp             HHHHCCC-CCHHHHHHHHHHHHHHTT------------------TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhCC-----------------ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999988888777766654                 22333444444555566642 223345555565554


Q ss_pred             H
Q 043837          344 A  344 (409)
Q Consensus       344 ~  344 (409)
                      .
T Consensus       287 ~  287 (290)
T PF04733_consen  287 A  287 (290)
T ss_dssp             H
T ss_pred             H
Confidence            3

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.46  E-value=2.9e-12  Score=117.62  Aligned_cols=196  Identities=16%  Similarity=0.051  Sum_probs=142.7

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 043837           60 DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLAD  139 (409)
Q Consensus        60 ~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  139 (409)
                      ..+..+...|=...|+..+++         ...|-....||...|+..+|.....+-++ .|+++..|..+|.+....--
T Consensus       403 ~laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  403 LLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence            344455555666666666655         34555666666666666666666666666 44455556666655555444


Q ss_pred             hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837          140 HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV  219 (409)
Q Consensus       140 ~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~  219 (409)
                      |++|.+..+..-..         +...+         +...+.+++|+++..+++..++++|-    ....|+.+|.+..
T Consensus       473 yEkawElsn~~sar---------A~r~~---------~~~~~~~~~fs~~~~hle~sl~~npl----q~~~wf~~G~~AL  530 (777)
T KOG1128|consen  473 YEKAWELSNYISAR---------AQRSL---------ALLILSNKDFSEADKHLERSLEINPL----QLGTWFGLGCAAL  530 (777)
T ss_pred             HHHHHHHhhhhhHH---------HHHhh---------ccccccchhHHHHHHHHHHHhhcCcc----chhHHHhccHHHH
Confidence            44444444331110         11111         22223449999999999999999998    7789999999999


Q ss_pred             HcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          220 KLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      ++++++.|..+|..++.++|++.++|.+++.+|+..++..+|...++++++.+-++..+++....+..
T Consensus       531 qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsv  598 (777)
T KOG1128|consen  531 QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSV  598 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhh
Confidence            99999999999999999999999999999999999999999999999999999888777766554443

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=1.2e-13  Score=123.71  Aligned_cols=68  Identities=51%  Similarity=0.890  Sum_probs=62.8

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||++.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G   70 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYDQYG   70 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence            36899999999999999999999999999999998754 468889999999999999999999999854

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.46  E-value=5.7e-11  Score=104.84  Aligned_cols=153  Identities=24%  Similarity=0.203  Sum_probs=111.5

Q ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837           87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA  166 (409)
Q Consensus        87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  166 (409)
                      |....+++..|..++..+++++|+..++..+...|+|+..+...+.++...++..+|++.+++++.++|+...   .+.+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---l~~~  379 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL---LQLN  379 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---HHHH
Confidence            5666777777777777777777777777777777777777777777777777777777777777777777766   6777


Q ss_pred             HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837          167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV  246 (409)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  246 (409)
                      ++.++...         |++.+|+..++..+..+|+    ++..|..++.+|..+|+-.+|..                 
T Consensus       380 ~a~all~~---------g~~~eai~~L~~~~~~~p~----dp~~w~~LAqay~~~g~~~~a~~-----------------  429 (484)
T COG4783         380 LAQALLKG---------GKPQEAIRILNRYLFNDPE----DPNGWDLLAQAYAELGNRAEALL-----------------  429 (484)
T ss_pred             HHHHHHhc---------CChHHHHHHHHHHhhcCCC----CchHHHHHHHHHHHhCchHHHHH-----------------
Confidence            77777766         7777777777777777777    45577777777777777655543                 


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          247 QRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       247 ~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      ..+..|...|++++|+..+..+.+..
T Consensus       430 A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         430 ARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            34455666677777777777777665

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=1.9e-13  Score=123.00  Aligned_cols=67  Identities=52%  Similarity=0.917  Sum_probs=62.7

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..+||++|+|.++++.+||+++|++++++||||+++.  ..++++|++|++||++|+||++|..||+..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G   70 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFG   70 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence            4699999999999999999999999999999999875  578999999999999999999999999843

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=1.7e-13  Score=122.82  Aligned_cols=68  Identities=54%  Similarity=0.947  Sum_probs=63.8

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|.++++.+||+++|+++++++|||+++.....++++|++|++||++|+||.+|..||+..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G   70 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG   70 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence            58999999999999999999999999999999988766679999999999999999999999999954

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.45  E-value=6.3e-14  Score=117.41  Aligned_cols=224  Identities=15%  Similarity=0.149  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY  135 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  135 (409)
                      ...-+++..++++|.|++||.+|.+ .+..+|.++-.+.++|..|+++..+..|...+..++.++.....+|..++.+-.
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~-~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYST-AIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE  176 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhh-hhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3356789999999999999999999 899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH-----------------------HHhhHHhcCCHHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK-----------------------SAEDNVSKGKLRVAVED  192 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~~~~~~~~~A~~~  192 (409)
                      .+|...+|.+.++.+|.+.|++.++...+..+.......-                       .+..+...+.++.++.+
T Consensus       177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~  256 (536)
T KOG4648|consen  177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVD  256 (536)
T ss_pred             HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeE
Confidence            9999999999999999999999886555555544322110                       11112222334444444


Q ss_pred             HHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          193 FKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       193 ~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      +..-+....+    +..+..+ +..+.+..+++.++..+.+++..+|.........+.+-.-.|...++...++.++.+.
T Consensus       257 ~~~~~A~~~~----~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~  331 (536)
T KOG4648|consen  257 VVSPRATIDD----SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA  331 (536)
T ss_pred             eeccccccCc----cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence            4333333332    2223333 6667777788888888888888887776666667777777777788888888888888


Q ss_pred             CCcHHHHHHHHHH
Q 043837          273 PQDMNIREALMRA  285 (409)
Q Consensus       273 p~~~~~~~~l~~~  285 (409)
                      |.+......+.+.
T Consensus       332 P~~~~~~~~~sr~  344 (536)
T KOG4648|consen  332 PAVETPKETETRK  344 (536)
T ss_pred             cccccchhhhhhh
Confidence            8776655555444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.45  E-value=2.9e-11  Score=99.94  Aligned_cols=170  Identities=22%  Similarity=0.291  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA---CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL---EAL  127 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~  127 (409)
                      .....|..|...+..|+|.+|+..|++ +....|.   .+.+.+.+|.+++..+++.+|+..+++.++..|+++   .++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~-l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEK-LIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHH-HHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            456789999999999999999999999 7776665   468899999999999999999999999999999864   578


Q ss_pred             HHHHHHHHhcC-----------ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH-----HHHhhHHhcCCHHHHHH
Q 043837          128 LHRGRAYYYLA-----------DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT-----KSAEDNVSKGKLRVAVE  191 (409)
Q Consensus       128 ~~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~A~~  191 (409)
                      +.+|.+++.+.           ...+|+..|+..+...|++.-+..+...+..+...+     ..+..+++.+.|..|+.
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~  162 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII  162 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            89999876653           245899999999999999877555555555544333     12333344444444444


Q ss_pred             HHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837          192 DFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK  225 (409)
Q Consensus       192 ~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~  225 (409)
                      .++.+++..|+.+. ...++..++.+|..+|..+
T Consensus       163 r~~~v~~~yp~t~~-~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  163 RFQYVIENYPDTPA-AEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHSTTSHH-HHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHCCCCch-HHHHHHHHHHHHHHhCChH
Confidence            44444444444332 2333444444444444433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=2.6e-12  Score=99.62  Aligned_cols=122  Identities=26%  Similarity=0.378  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc-chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA-HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      .+..+-.....++.++..|+|++|...|..||.+.|..+. ....+|.++|.++++++.++.|+..|.++|+++|.+..+
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA  170 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence            3455556667788999999999999999999999997443 356688899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      +.++|.+|.++.++++|++.|++.++.+|...+++..+.++-.
T Consensus       171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~  213 (271)
T KOG4234|consen  171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPP  213 (271)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence            9999999999999999999999999999998888877776644

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.45  E-value=3.2e-12  Score=114.78  Aligned_cols=113  Identities=16%  Similarity=0.240  Sum_probs=106.0

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      ....|..++..++|++|+.+|.+ ++..+|.++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.+++.+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~-Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQ-AIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            56778999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          138 ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      |++++|+..|++++.++|++..   +...++.+...+
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~---~~~~l~~~~~kl  117 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSR---FTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence            9999999999999999999998   677777766555

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.44  E-value=2.7e-11  Score=106.89  Aligned_cols=156  Identities=23%  Similarity=0.195  Sum_probs=142.8

Q ss_pred             hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      ..|....+++..+..++..+++++|+..+...+...|+|+.   .+...+.++...         ++..+|.+.+++++.
T Consensus       301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~---~~~~~~~i~~~~---------nk~~~A~e~~~kal~  368 (484)
T COG4783         301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY---YLELAGDILLEA---------NKAKEAIERLKKALA  368 (484)
T ss_pred             hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHh
Confidence            34788889999999999999999999999999999999998   777777777766         999999999999999


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837          199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI  278 (409)
Q Consensus       199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  278 (409)
                      ++|+    ...++.++|.++++.|++.+|+..++..+..+|+++..|..+|.+|..+|+..+|...+-+...+......+
T Consensus       369 l~P~----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A  444 (484)
T COG4783         369 LDPN----SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQA  444 (484)
T ss_pred             cCCC----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHH
Confidence            9999    677999999999999999999999999999999999999999999999999999999999999999887777


Q ss_pred             HHHHHHHHHHHh
Q 043837          279 REALMRAEKALK  290 (409)
Q Consensus       279 ~~~l~~~~~~~~  290 (409)
                      ...+..+....+
T Consensus       445 ~~~l~~A~~~~~  456 (484)
T COG4783         445 IIFLMRASQQVK  456 (484)
T ss_pred             HHHHHHHHHhcc
Confidence            777777666554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=7.7e-12  Score=105.57  Aligned_cols=262  Identities=16%  Similarity=0.126  Sum_probs=188.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLS-EAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .+|..|+..++-.+..+.+.. .....+|.|+..+|+|++|+..+...... ...+......|.+.+-.|.|.+|...-.
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~  115 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE  115 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence            478899999998887765444 66778999999999999999988876662 3345566778888888888888877665


Q ss_pred             HH-------------HHhhC------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           80 KV-------------VLVFS------------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        80 ~~-------------~~~~~------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      +.             +.+++            .+..+-...+|.+++..-.|++||+.|++++..+|+....-..++.||
T Consensus       116 ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCy  195 (557)
T KOG3785|consen  116 KAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCY  195 (557)
T ss_pred             hCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence            41             11111            012234456777888888999999999999999999888889999999


Q ss_pred             HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhH-------Hhc--CCHHHHHHHHH----------H
Q 043837          135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN-------VSK--GKLRVAVEDFK----------A  195 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~--~~~~~A~~~~~----------~  195 (409)
                      +++.-++-+.+.+.--+...|++.-   +....+.....+-.++.+       .+.  ..|..+...++          -
T Consensus       196 yKlDYydvsqevl~vYL~q~pdSti---A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEg  272 (557)
T KOG3785|consen  196 YKLDYYDVSQEVLKVYLRQFPDSTI---AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEG  272 (557)
T ss_pred             HhcchhhhHHHHHHHHHHhCCCcHH---HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCcc
Confidence            9999999999999999999999886   444443333322111111       111  12333333332          2


Q ss_pred             HHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837          196 ALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAA  269 (409)
Q Consensus       196 al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  269 (409)
                      |++.-|.--...+++..++...|+++++.++|+..++   .++|..|.-+...|.++..+|+--...++++-|.
T Consensus       273 ALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAq  343 (557)
T KOG3785|consen  273 ALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ  343 (557)
T ss_pred             HHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence            3333343222356699999999999999999998886   4789999999999999999998766666665553

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.44  E-value=3.4e-09  Score=91.35  Aligned_cols=256  Identities=19%  Similarity=0.141  Sum_probs=189.3

Q ss_pred             HHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHH-HHHHHHhCCCchHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcc
Q 043837           27 HRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD-SALKLYDSGEYTKPLEYIDKVVLVF-SPACSKAKLLKVKLLLAAK  104 (409)
Q Consensus        27 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~  104 (409)
                      .-|..-+..|+|..|...+.+.-...+.....|- -|...-..|+++.+-.++.+ +.+. ......+...++.+....+
T Consensus        89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~e-aae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAE-AAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHhCC
Confidence            3455666779999998888887665555444444 45556677999999999998 5555 3345678889999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH-------------------------
Q 043837          105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE-------------------------  159 (409)
Q Consensus       105 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------------  159 (409)
                      ++..|.....++++..|.++.++.....+|...|+|......+.+.-+..--+..                         
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence            9999999999999999999999999999999999999998888776543211111                         


Q ss_pred             HHHHHHHHHHHHH-----HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837          160 LKKAYFALKNLLK-----KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       160 ~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  234 (409)
                      ....|.++-....     ....+..++..|+.++|.+...++++..-+.     .+...++  ...-++...=++..++.
T Consensus       248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-----~L~~~~~--~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-----RLCRLIP--RLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-----hHHHHHh--hcCCCCchHHHHHHHHH
Confidence            0111222111111     1123455566699999999999999876662     1222222  34567888888999999


Q ss_pred             HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       235 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      ++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+.. .+..++.+...+..
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~  376 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGE  376 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999988754 45556666655544

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.43  E-value=3.2e-13  Score=88.87  Aligned_cols=64  Identities=52%  Similarity=0.862  Sum_probs=60.4

Q ss_pred             hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhh
Q 043837          296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYD  359 (409)
Q Consensus       296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~  359 (409)
                      ++|++|||.+.++.++|+++|+++++.+|||+.......++..+..|++||++|++|++|..||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5799999999999999999999999999999977765789999999999999999999999997

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=9.5e-09  Score=90.45  Aligned_cols=178  Identities=15%  Similarity=0.070  Sum_probs=132.7

Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHH---HhcCChHHHHHHHHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE-------ALLHRGRAY---YYLADHDVAQRHFQKGL  151 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~---~~~~~~~~A~~~~~~al  151 (409)
                      .+..+|.+.++|+..-.+....|+.+.-.+.|++|+...|...+       .|..+-.++   ....+.+.+.+.|+.||
T Consensus       314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l  393 (677)
T KOG1915|consen  314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL  393 (677)
T ss_pred             HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            46667888888888888888888888888888888887765332       122222222   34577888888888888


Q ss_pred             ccCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH
Q 043837          152 RLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS  230 (409)
Q Consensus       152 ~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  230 (409)
                      ++-|...- ..++|...+......         .+...|...+-.|+-.+|.+.     +.-..-.+-.++++++.+...
T Consensus       394 ~lIPHkkFtFaKiWlmyA~feIRq---------~~l~~ARkiLG~AIG~cPK~K-----lFk~YIelElqL~efDRcRkL  459 (677)
T KOG1915|consen  394 DLIPHKKFTFAKIWLMYAQFEIRQ---------LNLTGARKILGNAIGKCPKDK-----LFKGYIELELQLREFDRCRKL  459 (677)
T ss_pred             hhcCcccchHHHHHHHHHHHHHHH---------cccHHHHHHHHHHhccCCchh-----HHHHHHHHHHHHhhHHHHHHH
Confidence            88876432 334555555555444         888888888888888888733     445555666778889999999


Q ss_pred             HHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          231 CTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       231 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                      |++-|+..|.+..+|...|.+-..+|+.+.|...|+-|++...
T Consensus       460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999988887643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=5.5e-11  Score=106.87  Aligned_cols=231  Identities=16%  Similarity=0.104  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837           23 EAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLL  101 (409)
Q Consensus        23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~  101 (409)
                      ..++.--..+...++|++|...+.+.+... ......+.+..+++...+|++|+...+. -.... ......+..|.|.+
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk-~~~~~-~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK-NGALL-VINSFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh-cchhh-hcchhhHHHHHHHH
Confidence            344444456677888999998888888754 3455667788888999999999966554 11111 11222378999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 043837          102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV  181 (409)
Q Consensus       102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  181 (409)
                      +++..++|+.+++   ..++.+..+....|.+++++++|++|+..|+..++-+.++.+... ..++..+-...       
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~-r~nl~a~~a~l-------  159 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER-RANLLAVAAAL-------  159 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHhh-------
Confidence            9999999999998   456666778889999999999999999999998887766555111 11111111000       


Q ss_pred             hcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--------hh-------cHHHHH
Q 043837          182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--------EE-------LIEALV  246 (409)
Q Consensus       182 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~-------~~~~~~  246 (409)
                             ... ..+.+...|+   .....++|.+.++...|+|.+|++.+++++.+.        .+       -..+..
T Consensus       160 -------~~~-~~q~v~~v~e---~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv  228 (652)
T KOG2376|consen  160 -------QVQ-LLQSVPEVPE---DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV  228 (652)
T ss_pred             -------hHH-HHHhccCCCc---chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence                   111 3333334443   378899999999999999999999999995431        11       134567


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       247 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      .++.++..+|+..+|.+.|...++.+|.|..
T Consensus       229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~  259 (652)
T KOG2376|consen  229 QLAYVLQLQGQTAEASSIYVDIIKRNPADEP  259 (652)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence            8999999999999999999999999887653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=4.1e-12  Score=109.80  Aligned_cols=127  Identities=22%  Similarity=0.371  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC----c-------cchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH----T-------AHNVHLYLGLCKVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  234 (409)
                      .+...-.....+..+++.++|..|+..|++++..-...    .       .....++.|++.|+.++++|.+|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            34444455667888888899999999999998753321    1       123567899999999999999999999999


Q ss_pred             HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837          235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS  292 (409)
Q Consensus       235 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  292 (409)
                      |+++|+|..+++++|.++..+++|+.|+..|++++++.|+|..+...|..+....+..
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988776653

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.42  E-value=4.3e-13  Score=120.17  Aligned_cols=65  Identities=63%  Similarity=0.977  Sum_probs=60.3

Q ss_pred             hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      +||++|+|.+.++.++|+++|++++++||||++..  ..++++|++|++||++|+||.+|..||+..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g   65 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFG   65 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence            58999999999999999999999999999999873  567889999999999999999999999843

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=3e-13  Score=117.35  Aligned_cols=71  Identities=52%  Similarity=0.841  Sum_probs=66.8

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ....||++|+|.++++..+|+++||++|++||||+++....++.+.|+.|..||++||||+.|.=||+...
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            34679999999999999999999999999999999999999999999999999999999999999998543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=2.2e-13  Score=122.64  Aligned_cols=67  Identities=54%  Similarity=0.871  Sum_probs=62.3

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      .+||++|+|.+.++.++|+++|+++++++|||+++.  ..++++|++|++||++|+||++|..||+...
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~   69 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH   69 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence            589999999999999999999999999999999875  5788899999999999999999999998543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.41  E-value=5.7e-11  Score=100.43  Aligned_cols=181  Identities=18%  Similarity=0.158  Sum_probs=137.5

Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEA---LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY  164 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  164 (409)
                      .++..++..|..++..|+|++|++.|++++...|..+.+   .+.+|.+++..+++++|+..+++.++..|+++.+..++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            467778899999999999999999999999999998665   48999999999999999999999999999999888889


Q ss_pred             HHHHHHHHHHHHH--hhH-------HhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          165 FALKNLLKKTKSA--EDN-------VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       165 ~~l~~~~~~~~~~--~~~-------~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      +.++.+...+...  ..+       .+.....+|+..+++.++..|+++- .                 .+|...+..  
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-a-----------------~~A~~rl~~--  169 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-T-----------------TDATKRLVF--  169 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-H-----------------HHHHHHHHH--
Confidence            9998875444211  000       0112246788999999999998432 1                 122221111  


Q ss_pred             hcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       236 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                       +...-..--+..|..|.+.|.|..|+.-++.+++..|+.+...+.+..+....
T Consensus       170 -l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay  222 (243)
T PRK10866        170 -LKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAY  222 (243)
T ss_pred             -HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence             11122333457889999999999999999999999999887777666555444

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=1.8e-09  Score=89.46  Aligned_cols=260  Identities=14%  Similarity=0.066  Sum_probs=187.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      .+|..||+++..-.+.+|.+-..+..+|.||+...+|..|..++++.-.. +......+-.|..+++.+.+..|+.....
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~  103 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL  103 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            36889999999999999999999999999999999999999888876553 33344555667777777777776665543


Q ss_pred             H-----------------------------HHhhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 043837           81 V-----------------------------VLVFSP--ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH  129 (409)
Q Consensus        81 ~-----------------------------~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  129 (409)
                      +                             +++.-|  +.+....+.|.+.++.|+++.|++-|+.+++...-++-.-++
T Consensus       104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn  183 (459)
T KOG4340|consen  104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN  183 (459)
T ss_pred             hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHH
Confidence            1                             111123  567778888999999999999999999999999888999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHcc----CCCcH--------HHH-----HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRL----DPEHS--------ELK-----KAYFALKNLLKKTKSAEDNVSKGKLRVAVED  192 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~----~p~~~--------~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~  192 (409)
                      ++.+++..+++..|+++....+..    .|.-.        ++.     ..+..-+.+....-++...++.++++.|.+.
T Consensus       184 iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~ea  263 (459)
T KOG4340|consen  184 LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEA  263 (459)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHH
Confidence            999999999999999998887752    22210        000     0122222222222234455666999888877


Q ss_pred             HHHHHccCCCCc-cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837          193 FKAALALDPNHT-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       193 ~~~al~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  265 (409)
                      +..   +-|... ...+..+.+++..-. .+++.+...-++-.+.++|--.+...++-.+|++..-|+-|...+
T Consensus       264 LtD---mPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL  333 (459)
T KOG4340|consen  264 LTD---MPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL  333 (459)
T ss_pred             hhc---CCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence            653   333211 114557777775433 466778888888889999977888888888888888777776554

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.39  E-value=9.1e-13  Score=118.60  Aligned_cols=67  Identities=55%  Similarity=0.892  Sum_probs=61.9

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      .+||++|+|.+.++.++|+++|+++++++|||++..  ..++++|++|++||++|+||++|..||+...
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~   68 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGT   68 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence            379999999999999999999999999999999874  5788999999999999999999999999543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.39  E-value=7.2e-10  Score=113.57  Aligned_cols=271  Identities=14%  Similarity=-0.011  Sum_probs=196.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHhC
Q 043837            1 MKHYSEALDDLNTAIEADPTLS-----EAYFHRGSVLRQLCRVKARNSVAEKELSQLL-------QAQSTFDSALKLYDS   68 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~a~~~~~~   68 (409)
                      .|++++|...+++++...|...     .+...+|.++...|++++|...+.+.+....       ........+..++..
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            4789999999999998655422     3567788999999999999999888875322       233445678888999


Q ss_pred             CCchHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH
Q 043837           69 GEYTKPLEYIDKVVLVFS--------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-----NLEALLHRGRAYY  135 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~  135 (409)
                      |++++|...+.+ ++...        +....++..+|.++...|++++|...+.+++.....     ....+..++.++.
T Consensus       545 G~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        545 GFLQAAYETQEK-AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCHHHHHHHHHH-HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            999999999988 44431        112344667899999999999999999999876332     2445667899999


Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC  215 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la  215 (409)
                      ..|+++.|...+.++..+.+..............+     ....+...|+.+.|...+.......+.........+..++
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a  698 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV-----RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA  698 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH-----HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence            99999999999999977543321100011110000     0111222489999999988766543332211223356899


Q ss_pred             HHHHHcCChhHHHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          216 KVLVKLGRGKDALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       216 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      .++...|++++|+..+++++....      ....++..+|.++...|+.++|...+.+++++.....-
T Consensus       699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence            999999999999999999987632      34567888999999999999999999999998765443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.1e-08  Score=90.13  Aligned_cols=300  Identities=12%  Similarity=0.053  Sum_probs=159.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL-KLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~   80 (409)
                      +++..|...|++||..+..+...|+..+.+-.+......|..+..+++...+.....+.+-+ .--..|+..-|.++|++
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer  166 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER  166 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            45677888899999998888888888888888888888887777777766555444333222 22233555555555555


Q ss_pred             HHHhhCCC--------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---
Q 043837           81 VVLVFSPA--------------------------------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---  125 (409)
Q Consensus        81 ~~~~~~p~--------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---  125 (409)
                       -+...|+                                ....|...|..-.+.|+..-|...|.+|++.-.++..   
T Consensus       167 -W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~  245 (677)
T KOG1915|consen  167 -WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI  245 (677)
T ss_pred             -HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence             3344332                                2344444445555555555555555555544333211   


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH---------------HHhhH----------
Q 043837          126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK---------------SAEDN----------  180 (409)
Q Consensus       126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~---------------~~~~~----------  180 (409)
                      .+...|..-..+..++.|...|+-||..-|.+..- ..+..+.....+.+               +.+..          
T Consensus       246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~rae-eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDs  324 (677)
T KOG1915|consen  246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAE-ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDS  324 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchH
Confidence            22333344444555666666666666555544210 00000000000000               00000          


Q ss_pred             --------HhcCCHHHHHHHHHHHHccCC--------------------------------------------CCccchH
Q 043837          181 --------VSKGKLRVAVEDFKAALALDP--------------------------------------------NHTAHNV  208 (409)
Q Consensus       181 --------~~~~~~~~A~~~~~~al~~~~--------------------------------------------~~~~~~~  208 (409)
                              -..|+.+.-.+.|++|+...|                                            ...-..+
T Consensus       325 WfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFa  404 (677)
T KOG1915|consen  325 WFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFA  404 (677)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHH
Confidence                    001445555555555555444                                            3222233


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                      .+|...|.....+.+...|.+.+-.||-..|.+ .+......+-.++++++.....|++-++..|.+-.++...+.+...
T Consensus       405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~  483 (677)
T KOG1915|consen  405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS  483 (677)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence            444444444445555555555555555555532 2223333455567788888888888888888888888887777777


Q ss_pred             Hhhcchhhhhhhhccc
Q 043837          289 LKMSKRKDWYKILGVS  304 (409)
Q Consensus       289 ~~~~~~~~~~~~l~~~  304 (409)
                      +....+.-..-.|.++
T Consensus       484 LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  484 LGDTDRARAIFELAIS  499 (677)
T ss_pred             hhhHHHHHHHHHHHhc
Confidence            7766654433333333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.38  E-value=1.2e-10  Score=96.32  Aligned_cols=172  Identities=22%  Similarity=0.184  Sum_probs=121.9

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF  165 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  165 (409)
                      .+..++..|..++..|+|.+|+..|++++...|.+   +.+.+.+|.+++..+++++|+..+++.+...|+++.+..+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46788999999999999999999999999998875   568899999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHh--hHHhcCCHHHHHHHHHHHHccCCCCccc-------------hHHHHHHHHHHHHHcCChhHHHHH
Q 043837          166 ALKNLLKKTKSAE--DNVSKGKLRVAVEDFKAALALDPNHTAH-------------NVHLYLGLCKVLVKLGRGKDALSS  230 (409)
Q Consensus       166 ~l~~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~  230 (409)
                      .++.++.......  ...+.....+|+..|+..++..|+++-.             ...--+.+|..|.+.|.+..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            8888876553221  1234466789999999999999986531             111123456666666666666666


Q ss_pred             HHHHHhcChhc---HHHHHHHHHHHHhccCHHH
Q 043837          231 CTEALNINEEL---IEALVQRGEAKLLTEDWEG  260 (409)
Q Consensus       231 ~~~al~~~p~~---~~~~~~la~~~~~~~~~~~  260 (409)
                      ++.+++..|+.   .+++..++.+|.++|..+.
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence            66666665543   3455666666666666653

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=8.6e-13  Score=111.46  Aligned_cols=67  Identities=51%  Similarity=0.880  Sum_probs=64.2

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ..+||.+||+..+++..+|+++|+..++++||||++++.+ |..+|+.+++||++|+|+++|..||..
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~~YDk~   70 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRAAYDKL   70 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            5789999999999999999999999999999999999976 999999999999999999999999983

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=6.6e-13  Score=119.16  Aligned_cols=66  Identities=59%  Similarity=0.911  Sum_probs=61.1

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|.++++.++|+++|++++++||||++..  ..++++|++|++||++|+||.+|..||+..
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G   68 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRAAYDRFG   68 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence            589999999999999999999999999999999863  457889999999999999999999999943

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.8e-12  Score=112.66  Aligned_cols=68  Identities=46%  Similarity=0.758  Sum_probs=64.1

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC--CCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN--VDNREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~--~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      .+.++|.+|++.++++.+||+++||+++..+|||+.  ++.++.|+.+|+.|.+|||+|+||.+|.-||.
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~   76 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN   76 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            346899999999999999999999999999999994  56889999999999999999999999999999

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.30  E-value=3e-12  Score=112.00  Aligned_cols=66  Identities=45%  Similarity=0.824  Sum_probs=61.4

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .++|++|++++.++.++|+++|+++++++|||++..  ..++++|++|++||++|+||.+|..||...
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--PDAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            589999999999999999999999999999999764  468999999999999999999999999853

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.30  E-value=3.3e-10  Score=89.38  Aligned_cols=200  Identities=19%  Similarity=0.119  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 043837           50 SQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH  129 (409)
Q Consensus        50 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  129 (409)
                      .....+.-.++++..+-..|-+.-|.--|.+ ++.+.|..+.++..+|..+...|+|+.|.+.|+.+++++|.+.-++.+
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQ-aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN  138 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQ-ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  138 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhh-hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence            3455667778888888888888888888888 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHH-HHccCCCCccchH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKA-ALALDPNHTAHNV  208 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~  208 (409)
                      +|..++.-|++.-|.+.+.+-...||+++-- ..|..+..   ..         -+..+|...+.+ +...+.+     .
T Consensus       139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR-~LWLYl~E---~k---------~dP~~A~tnL~qR~~~~d~e-----~  200 (297)
T COG4785         139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPFR-SLWLYLNE---QK---------LDPKQAKTNLKQRAEKSDKE-----Q  200 (297)
T ss_pred             cceeeeecCchHhhHHHHHHHHhcCCCChHH-HHHHHHHH---hh---------CCHHHHHHHHHHHHHhccHh-----h
Confidence            9999999999999999999999999998852 12322221   11         466666655543 3333332     2


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINE-------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      +-|+...   +.+|+..+ ...++++..-..       .-.++++.+|..+...|+.++|...|+-++..+
T Consensus       201 WG~~iV~---~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         201 WGWNIVE---FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             hhHHHHH---HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            2222221   22233221 122333332222       236789999999999999999999999888754

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=5.1e-12  Score=99.71  Aligned_cols=73  Identities=47%  Similarity=0.847  Sum_probs=66.2

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcc
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD-NREEAENKFREIAAAYEVLGDDDKRARYDRGEDIE  365 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~-~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~  365 (409)
                      ...+.|++|||.++++..+|+++|+++++.||||++++ ...++..+|+.++.+|.+|+|.++|..||....++
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            34589999999999999999999999999999999864 56889999999999999999999999999866554

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=3.5e-12  Score=109.18  Aligned_cols=66  Identities=55%  Similarity=0.904  Sum_probs=62.5

Q ss_pred             hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ++|++||+.+.++..||+++|+++++++|||.+...  +++++|++|.+|||+|+|++||..||...-
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~  109 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQEYDVYGL  109 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence            899999999999999999999999999999998875  899999999999999999999999998433

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=4.7e-12  Score=102.80  Aligned_cols=67  Identities=57%  Similarity=0.893  Sum_probs=63.4

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ..++|.+||+.++++.++|+++||++++++|||++.++ +++-.+|++|+.||.+|+||.+|..||..
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~   96 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-PEATDKFKEINTAYAILSDPTKRNVYDEY   96 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-chhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence            45799999999999999999999999999999999888 78889999999999999999999999995

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.29  E-value=4e-12  Score=114.34  Aligned_cols=66  Identities=53%  Similarity=0.893  Sum_probs=61.3

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++|+|.++++.++|+++|+++++++|||+++.  ..++++|++|++||++|+||.+|..||...
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g   68 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQFG   68 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence            589999999999999999999999999999999875  457889999999999999999999999854

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.29  E-value=1.7e-11  Score=82.38  Aligned_cols=67  Identities=24%  Similarity=0.379  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhCC
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE-DWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p  273 (409)
                      ++.+|..+|.++...+++++|+.+|+++++++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            56799999999999999999999999999999999999999999999999 79999999999999998

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.28  E-value=1.3e-10  Score=87.71  Aligned_cols=110  Identities=22%  Similarity=0.197  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL-  241 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-  241 (409)
                      .++.++..+...         +++++|+..|.+++...|+++. ...+++.+|.++...+++++|+..|++++..+|++ 
T Consensus         4 ~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         4 AYYDAALLVLKA---------GDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence            455555555555         9999999999999999988543 46789999999999999999999999999998875 


Q ss_pred             --HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          242 --IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       242 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                        +.++..+|.++..++++++|+..++++++..|++..+....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence              67899999999999999999999999999999987765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=6.6e-09  Score=84.84  Aligned_cols=256  Identities=18%  Similarity=0.101  Sum_probs=176.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      +|+|.++|..-.+.-... ...+..+.+.+.|+.+|.+..-+......-.....+.  ...+...-.-++-+.-+.-+.+
T Consensus        21 ~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAv--r~~a~~~~~e~~~~~~~~~l~E   97 (299)
T KOG3081|consen   21 LGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAV--RLLAEYLELESNKKSILASLYE   97 (299)
T ss_pred             hhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHH--HHHHHHhhCcchhHHHHHHHHH
Confidence            466777776666544333 6777888889999999987654333322211111111  1111111112333333333333


Q ss_pred             HH-HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           81 VV-LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        81 ~~-~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      .+ ......+......-|.++...+++++|+......     .+.++...--.|+.++.+.+-|...++++..++.+.  
T Consensus        98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--  170 (299)
T KOG3081|consen   98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--  170 (299)
T ss_pred             HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--
Confidence            23 3333344466677788999999999999888763     345666677788899999999999999999987664  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                         .+..++..+..+..+     .+++.+|.-+|++.-+..|.    .+.+....+.|++.+++|++|...++.++..++
T Consensus       171 ---tLtQLA~awv~la~g-----gek~qdAfyifeE~s~k~~~----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  171 ---TLTQLAQAWVKLATG-----GEKIQDAFYIFEELSEKTPP----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             ---HHHHHHHHHHHHhcc-----chhhhhHHHHHHHHhcccCC----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence               344455555443222     26689999999999886665    577899999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHH-HHHHHHhhCCCcHHH
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVE-DLKSAAQQSPQDMNI  278 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~~  278 (409)
                      ++++++.++-.+-..+|...++.+ .+.+....+|+++-+
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            999999999999999998866654 556666667877654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.28  E-value=1.8e-11  Score=82.31  Aligned_cols=67  Identities=33%  Similarity=0.398  Sum_probs=63.3

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA-DHDVAQRHFQKGLRLDP  155 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p  155 (409)
                      ++.+|..+|.+++..+++++|+..|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57789999999999999999999999999999999999999999999999 79999999999999987

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.27  E-value=5.7e-11  Score=102.34  Aligned_cols=237  Identities=16%  Similarity=0.097  Sum_probs=168.1

Q ss_pred             HHHHHHHcCChHHHhHHHHHHHHH----HHH-HHHHHHHHHHHHhCCCchHHHHHHHHH-----HHhhCCCcHHHHHHHH
Q 043837           28 RGSVLRQLCRVKARNSVAEKELSQ----LLQ-AQSTFDSALKLYDSGEYTKPLEYIDKV-----VLVFSPACSKAKLLKV   97 (409)
Q Consensus        28 la~~~~~~g~~~~A~~~~~~~l~~----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~-----~~~~~p~~~~~~~~~a   97 (409)
                      -|.-+++.|+....+..++.++..    ... ...+-+.+..++-.++|.+|+++-..-     .+...-..+..--++|
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            356678889999888888888773    222 233445778888899999999875431     1111223455667899


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCh-------------HHHHHHHHHHHccCCCcH
Q 043837           98 KLLLAAKDYASAISETGYLLKEDEN------NLEALLHRGRAYYYLADH-------------DVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus        98 ~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~-------------~~A~~~~~~al~~~p~~~  158 (409)
                      .++-.+|.|++|+.++.+-+.+...      ...++|++|.+|...|+.             +++...++.|++..-.+.
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL  182 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL  182 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988876432      345899999999887642             233344444443322222


Q ss_pred             H----------HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--ccchHHHHHHHHHHHHHcCChhH
Q 043837          159 E----------LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--TAHNVHLYLGLCKVLVKLGRGKD  226 (409)
Q Consensus       159 ~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~la~~~~~~~~~~~  226 (409)
                      .          ...++-+++..|..+         |+|+.||..-+.-+.+....  ......++.++|.|+.-+|+++.
T Consensus       183 ~l~~~lgDr~aqGRa~GnLGNTyYlL---------Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~  253 (639)
T KOG1130|consen  183 ELSEKLGDRLAQGRAYGNLGNTYYLL---------GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL  253 (639)
T ss_pred             HHHHHhhhHHhhcchhcccCceeeee---------ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence            1          112344444444444         99999999998888775532  22245688999999999999999


Q ss_pred             HHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          227 ALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       227 A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                      |+++|++.+.+.-      ..+...+.+|..|.-+.++++|+.++++-+.+..
T Consensus       254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999876532      3466788999999999999999999999887653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.26  E-value=1.8e-10  Score=86.82  Aligned_cols=103  Identities=22%  Similarity=0.302  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLH  129 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  129 (409)
                      ...+..+..++..|++++|+..|.+ ++...|++   +.+++.+|.++...++++.|+..|++++..+|++   +.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQA-FLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4567888889999999999999988 77777765   5789999999999999999999999999998885   678999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      +|.++..++++++|+.++++++...|++..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            999999999999999999999999999876

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.25  E-value=1.3e-10  Score=97.89  Aligned_cols=117  Identities=18%  Similarity=0.274  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837          167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV  246 (409)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  246 (409)
                      |...-...++++.++++|+|++|+.+|.+++..+|.    ++.++.+++.+|++++.+..|...|+.++.++.....+|.
T Consensus        94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~----NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen   94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH----NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC----CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            333344567899999999999999999999999998    5669999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       247 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      +++.+...+|+..+|.+.++.++++.|++.+++..+..+..
T Consensus       170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  170 RRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999999887776655543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.24  E-value=6e-10  Score=89.49  Aligned_cols=128  Identities=16%  Similarity=0.154  Sum_probs=96.1

Q ss_pred             CCchHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHH
Q 043837           69 GEYTKPLEYIDKVVLVFSPA--CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A  143 (409)
                      ..|..+...+.. ++..++.  ...+++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|
T Consensus        13 ~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA   91 (168)
T CHL00033         13 KTFTIVADILLR-ILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA   91 (168)
T ss_pred             cccccchhhhhH-hccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence            345555555544 4334444  36778999999999999999999999999987763   45899999999999999999


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH-------HHHHHHHHHHccCCC
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLR-------VAVEDFKAALALDPN  202 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~al~~~~~  202 (409)
                      +..+++++.++|....   .+..++.++...  +..+...|+++       +|+.++++++..+|.
T Consensus        92 ~~~~~~Al~~~~~~~~---~~~~la~i~~~~--~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033         92 LEYYFQALERNPFLPQ---ALNNMAVICHYR--GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHHhCcCcHH---HHHHHHHHHHHh--hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999999999887   788888888755  33344456655       444444455555554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.23  E-value=3.5e-11  Score=84.23  Aligned_cols=83  Identities=19%  Similarity=0.315  Sum_probs=74.0

Q ss_pred             cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHH
Q 043837          183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV  262 (409)
Q Consensus       183 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  262 (409)
                      +++|+.|+.+++++++..|.++  +..+++.+|.|++..|++++|+..+++ +..+|.+....+.+|.|+..+|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            4899999999999999999643  456788899999999999999999999 8888988999999999999999999999


Q ss_pred             HHHHHH
Q 043837          263 EDLKSA  268 (409)
Q Consensus       263 ~~~~~a  268 (409)
                      +.|+++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.23  E-value=8.9e-09  Score=89.90  Aligned_cols=172  Identities=15%  Similarity=0.078  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHhc-CChHHHHHHHHHHHccCC---CcHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDE--N----NLEALLHRGRAYYYL-ADHDVAQRHFQKGLRLDP---EHSEL  160 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p---~~~~~  160 (409)
                      ..+...+.++... ++++|+.+|++++.+.-  .    -...+..+|.+|... +++++|+++|++|+.+..   .....
T Consensus        76 ~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a  154 (282)
T PF14938_consen   76 KAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA  154 (282)
T ss_dssp             HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence            4455556666555 88888888888887632  1    134678899999998 999999999999998632   22333


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--c-hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--H-NVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      ...+..++.++..+         ++|++|+..|+++....-+++.  . ....++..+.|++..|++..|...+++....
T Consensus       155 ~~~~~~~A~l~~~l---------~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  155 AECLLKAADLYARL---------GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44666667666666         9999999999999876543321  1 2245677888999999999999999999998


Q ss_pred             Chhc-----HHHHHHHHHHHHh--ccCHHHHHHHHHHHHhhC
Q 043837          238 NEEL-----IEALVQRGEAKLL--TEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       238 ~p~~-----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~  272 (409)
                      +|..     ......+-.++-.  ...+.+|+..|.+..+++
T Consensus       226 ~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  226 DPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             STTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence            8743     3444444555443  356778888777665554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.23  E-value=4.3e-10  Score=90.59  Aligned_cols=117  Identities=17%  Similarity=0.254  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837          126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA  205 (409)
Q Consensus       126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  205 (409)
                      +++.+|.++...|++++|+.+|++++...|+......++..++.++...         |++++|+..+.+++...|+   
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~---  104 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN---------GEHDKALEYYHQALELNPK---  104 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcc---
Confidence            4445555555555555555555555544433222122444455544444         5555555555555555555   


Q ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                       ....+..+|.++...++...+...+..++.                    .+++|++++++++..+|++
T Consensus       105 -~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        105 -QPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             -cHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence             344555666666666665555554444432                    2566777777777777765

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.22  E-value=1.7e-11  Score=116.90  Aligned_cols=66  Identities=41%  Similarity=0.641  Sum_probs=61.7

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ..+||.+|||.++++..+|+++|+++|+++|||+++..  .+..+|+.|.+||++|+||++|..||.+
T Consensus       572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~  637 (1136)
T PTZ00341        572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKF  637 (1136)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence            46899999999999999999999999999999998764  5788999999999999999999999984

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.22  E-value=2.9e-08  Score=84.56  Aligned_cols=240  Identities=18%  Similarity=0.121  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHH----HHHHHHhCCCchHHHHHHHHHH---HhhC--CCcHHHHH
Q 043837           24 AYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD----SALKLYDSGEYTKPLEYIDKVV---LVFS--PACSKAKL   94 (409)
Q Consensus        24 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~A~~~~~~~~---~~~~--p~~~~~~~   94 (409)
                      -....|.-++...+++.|+....+.+....+....+.    .+...-++|.|++++.+--..+   .+.+  .....++.
T Consensus         8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l   87 (518)
T KOG1941|consen    8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL   87 (518)
T ss_pred             HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666677777777766666665555444432    3334555666666665543211   1111  12357788


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH---HHHHHHH
Q 043837           95 LKVKLLLAAKDYASAISETGYLLKEDENNL-----EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE---LKKAYFA  166 (409)
Q Consensus        95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~  166 (409)
                      +++..+...-++.+++.+.+..+.+....+     .++..++.++.-++.++++++.|++|+.+..++.+   -..++..
T Consensus        88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~  167 (518)
T KOG1941|consen   88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS  167 (518)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence            999999999999999999998887643332     46778999999999999999999999987544332   1236788


Q ss_pred             HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC------ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--
Q 043837          167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH------TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--  238 (409)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--  238 (409)
                      ++..+..+         .++++|+.+..+|.++....      ..+...+++.++.++..+|+.-.|.++++++.++.  
T Consensus       168 Lgslf~~l---------~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  168 LGSLFAQL---------KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             HHHHHHHH---------HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            88888888         99999999999998865431      12345677889999999999999999999998763  


Q ss_pred             ----hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          239 ----EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       239 ----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                          +-......-+|.+|...|+.+.|..-|+.|....
T Consensus       239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence                3456677889999999999999999999998765

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=8.3e-10  Score=95.76  Aligned_cols=138  Identities=24%  Similarity=0.298  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCC--------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 043837           53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSP--------------ACSKAKLLKVKLLLAAKDYASAISETGYLLK  118 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  118 (409)
                      ..+...-..+..+++.|+|..|+..|++++.-+.-              .-..+++++|.|++++++|.+|+..+.++|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            34444556666777777777777777763222210              1245789999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      ++|+|..+++..|.++..+++++.|+..|+++++++|+|..   +...+..+.....        ...+...+.|..++.
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka---~~~el~~l~~k~~--------~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA---ARAELIKLKQKIR--------EYEEKEKKMYANMFA  354 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999988   6666665554441        223344667777776


Q ss_pred             cCC
Q 043837          199 LDP  201 (409)
Q Consensus       199 ~~~  201 (409)
                      ..+
T Consensus       355 k~~  357 (397)
T KOG0543|consen  355 KLA  357 (397)
T ss_pred             ccc
Confidence            544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.21  E-value=2.3e-09  Score=83.68  Aligned_cols=132  Identities=20%  Similarity=0.142  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HH
Q 043837           52 LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LE  125 (409)
Q Consensus        52 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~  125 (409)
                      ...+...|..+...+..++...+...++. +....|..   ..+.+.+|.+++..|++++|+..|+.++...|+.   ..
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~   86 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQ-LAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL   86 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence            34566678888888889999999888988 77778887   6778889999999999999999999999987664   34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Q 043837          126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAAL  197 (409)
Q Consensus       126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  197 (409)
                      +.+.++.++...|++++|+..++.. .-.+-.+.   ++..+|.++...         |++++|+..|+++|
T Consensus        87 a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~---~~~~~Gdi~~~~---------g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   87 ARLRLARILLQQGQYDEALATLQQI-PDEAFKAL---AAELLGDIYLAQ---------GDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHH---HHHHHHHHHHHC---------CCHHHHHHHHHHhC
Confidence            7789999999999999999999762 22222222   666777777766         99999999999875

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.21  E-value=4.1e-11  Score=77.78  Aligned_cols=59  Identities=63%  Similarity=1.054  Sum_probs=54.3

Q ss_pred             hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhh
Q 043837          296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK  354 (409)
Q Consensus       296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~  354 (409)
                      ++|++||+.+.++.++|+++|+++++.+|||+.......++..|..|++||++|+||.+
T Consensus         2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            68999999999999999999999999999999875457889999999999999999863

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.21  E-value=1e-09  Score=102.71  Aligned_cols=151  Identities=16%  Similarity=0.124  Sum_probs=116.9

Q ss_pred             hhCCCCHHHH--HHHHHHHHhcCC---hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHH
Q 043837          118 KEDENNLEAL--LHRGRAYYYLAD---HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVED  192 (409)
Q Consensus       118 ~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~  192 (409)
                      ..-|.+..+|  +..|..+....+   ...|+.+|+++++++|++..   ++..++.++....... -....+...+...
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---a~A~la~~~~~~~~~~-~~~~~~l~~a~~~  406 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---AQAEKALADIVRHSQQ-PLDEKQLAALSTE  406 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence            3456666665  566766665544   77899999999999999987   7777666654331111 0112345566777


Q ss_pred             HHHHHcc--CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          193 FKAALAL--DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       193 ~~~al~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      ..+++.+  +|.    .+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.
T Consensus       407 ~~~a~al~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        407 LDNIVALPELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             HHHhhhcccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7776665  444    456888899999999999999999999999999 588999999999999999999999999999


Q ss_pred             hCCCcHH
Q 043837          271 QSPQDMN  277 (409)
Q Consensus       271 ~~p~~~~  277 (409)
                      ++|.++.
T Consensus       482 L~P~~pt  488 (517)
T PRK10153        482 LRPGENT  488 (517)
T ss_pred             cCCCCch
Confidence            9999875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.5e-09  Score=90.98  Aligned_cols=130  Identities=21%  Similarity=0.230  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837          140 HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV  219 (409)
Q Consensus       140 ~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~  219 (409)
                      .+.-+.-++.-+..+|++..   -|..++.++...         +++..|...|.+++++.|+    ++.++..+|.+++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~e---gW~~Lg~~ym~~---------~~~~~A~~AY~~A~rL~g~----n~~~~~g~aeaL~  201 (287)
T COG4235         138 MEALIARLETHLQQNPGDAE---GWDLLGRAYMAL---------GRASDALLAYRNALRLAGD----NPEILLGLAEALY  201 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHh---------cchhHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Confidence            56677788888999999999   999999999999         9999999999999999999    7789999999987


Q ss_pred             HcC---ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837          220 KLG---RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA  285 (409)
Q Consensus       220 ~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  285 (409)
                      .+.   ...++...+++++.++|+++.+.+.+|..++..|+|.+|+..++..+...|.+..-+..+.+.
T Consensus       202 ~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         202 YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            765   457899999999999999999999999999999999999999999999998876655555444

>PRK11906 transcriptional regulator; Provisional

Probab=99.20  E-value=8.3e-10  Score=98.17  Aligned_cols=159  Identities=11%  Similarity=0.009  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            4 YSEALDDLNTAI---EADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         4 ~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      .+.|+.+|.+++   +++|+++.+|..++.|+...--                       .+..- ...+..+|+.+.++
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-----------------------~g~~~-~~~~~~~a~~~A~r  329 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-----------------------HGKSE-LELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-----------------------hcCCC-chHHHHHHHHHHHH
Confidence            467999999999   9999999999999999875411                       00000 11223445555555


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       +++++|.++.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+.++|++.++++++++|.....
T Consensus       330 -Aveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        330 -VSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             -HHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999987652


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      ......+ ..|          -....++|+..|-+-.+
T Consensus       409 ~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        409 VVIKECV-DMY----------VPNPLKNNIKLYYKETE  435 (458)
T ss_pred             HHHHHHH-HHH----------cCCchhhhHHHHhhccc
Confidence            1111111 011          11667778877765443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2e-09  Score=90.24  Aligned_cols=122  Identities=22%  Similarity=0.232  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837          106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK  185 (409)
Q Consensus       106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (409)
                      .+.-+.-++.-+..+|++.+-|..||.+|..++++..|...|.+++++.|++++   .+..++.++....      ....
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---~~~g~aeaL~~~a------~~~~  208 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---ILLGLAEALYYQA------GQQM  208 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhc------CCcc
Confidence            455555566666666666666666666666666666666666666666666666   5555555554431      1134


Q ss_pred             HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                      ..++...+++++..+|+    +..+...+|..++..|+|.+|+..++..+...|.
T Consensus       209 ta~a~~ll~~al~~D~~----~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         209 TAKARALLRQALALDPA----NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             cHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            55666666666666666    5556666666666666666666666666666553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.20  E-value=2.6e-09  Score=83.35  Aligned_cols=121  Identities=22%  Similarity=0.202  Sum_probs=80.0

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837          101 LAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA  177 (409)
Q Consensus       101 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~  177 (409)
                      ...++...+...++.+++.+|+.   ..+.+.+|.+++..|++++|+..|+.++...|+......+...++.++...   
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~---   98 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ---   98 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc---
Confidence            35777777877788888888877   445677888888888888888888888887665543333455555555544   


Q ss_pred             hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                            |++++|+..++.+ .-.+    ..+.++..+|.++...|++++|+..|+++|
T Consensus        99 ------~~~d~Al~~L~~~-~~~~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   99 ------GQYDEALATLQQI-PDEA----FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             ------CCHHHHHHHHHhc-cCcc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                  7777777776441 1111    145566666777777777777776666653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.19  E-value=9.7e-08  Score=98.03  Aligned_cols=262  Identities=16%  Similarity=0.047  Sum_probs=183.2

Q ss_pred             CCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH------HHHHHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPT---------LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL------QAQSTFDSALKL   65 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~a~~~   65 (409)
                      .+++++|...+.++...-+.         .......++.++...|++++|...+...+....      ........+..+
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            36889999999888764221         234455678889999999999999988776211      223345567778


Q ss_pred             HhCCCchHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHH
Q 043837           66 YDSGEYTKPLEYIDKVVLVFSPA------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--------NLEALLHRG  131 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~  131 (409)
                      ...|++++|+..+.+ ++.....      ...++..+|.++...|++++|...+.+++.....        ....+..+|
T Consensus       502 ~~~G~~~~A~~~~~~-al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  580 (903)
T PRK04841        502 HCKGELARALAMMQQ-TEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA  580 (903)
T ss_pred             HHcCCHHHHHHHHHH-HHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            889999999999988 5433211      1346678899999999999999999999886221        123456789


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccch--
Q 043837          132 RAYYYLADHDVAQRHFQKGLRLDPEH--SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN--  207 (409)
Q Consensus       132 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--  207 (409)
                      .++...|++++|...+.+++......  ......+..++.+....         |++++|...+.++..+.+......  
T Consensus       581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---------G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR---------GDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhcccccHhH
Confidence            99999999999999999998864321  11122344444444444         999999999999987644321100  


Q ss_pred             -HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          208 -VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI----EALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       208 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                       ..........+...|+.+.|..++.......+...    ..+..++.++...|++++|...+++++...
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~  721 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA  721 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             11111123455668899999998877655332221    225678999999999999999999999864

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=7.1e-10  Score=91.77  Aligned_cols=188  Identities=15%  Similarity=0.054  Sum_probs=151.0

Q ss_pred             HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837           65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus        65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      +++..+|..||+++.. -.+.+|.+...+..+|.||+...+|..|.++|++.-.+.|......+..+..++..+.+..|+
T Consensus        20 lI~d~ry~DaI~~l~s-~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGS-ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHhhHHHHHHHHHH-HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            4566788899998877 778889899999999999999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                      .........    ..   .+...-.+.     +...++.+++..+....++.-..  +    .+....+.|.+.++.|++
T Consensus        99 rV~~~~~D~----~~---L~~~~lqLq-----aAIkYse~Dl~g~rsLveQlp~e--n----~Ad~~in~gCllykegqy  160 (459)
T KOG4340|consen   99 RVAFLLLDN----PA---LHSRVLQLQ-----AAIKYSEGDLPGSRSLVEQLPSE--N----EADGQINLGCLLYKEGQY  160 (459)
T ss_pred             HHHHHhcCC----HH---HHHHHHHHH-----HHHhcccccCcchHHHHHhccCC--C----ccchhccchheeeccccH
Confidence            888775443    22   222111111     22233446776666665543211  1    455888999999999999


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      +.|++-|+.+++...-++-.-++++.+++..+++..|+++..+.++.
T Consensus       161 EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  161 EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            99999999999999888999999999999999999999988887764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.19  E-value=6.8e-11  Score=82.78  Aligned_cols=81  Identities=22%  Similarity=0.294  Sum_probs=71.8

Q ss_pred             CCCchHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837           68 SGEYTKPLEYIDKVVLVFSPA--CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  145 (409)
                      +++|++|+.++++ ++...|.  +..+++.+|.|++..|++++|+..+++ ++.+|.+...++.+|.++..+|++++|+.
T Consensus         2 ~~~y~~Ai~~~~k-~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEK-LLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHH-HHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHH-HHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            5789999999999 7888774  567788899999999999999999999 88889888999999999999999999999


Q ss_pred             HHHHH
Q 043837          146 HFQKG  150 (409)
Q Consensus       146 ~~~~a  150 (409)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.18  E-value=7.8e-10  Score=88.80  Aligned_cols=106  Identities=12%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             cCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 043837          104 KDYASAISETGYLLKEDENN--LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV  181 (409)
Q Consensus       104 ~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  181 (409)
                      ..+..+...+...++..+..  ...++.+|.++...+++++|+..|++++.+.|++.....++.+++.++...       
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-------   85 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-------   85 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-------
Confidence            34566666666665555554  557799999999999999999999999999877554445889999999888       


Q ss_pred             hcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC
Q 043837          182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG  222 (409)
Q Consensus       182 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~  222 (409)
                        |++++|+..+++++.+.|.    ....+.++|.++...+
T Consensus        86 --g~~~eA~~~~~~Al~~~~~----~~~~~~~la~i~~~~~  120 (168)
T CHL00033         86 --GEHTKALEYYFQALERNPF----LPQALNNMAVICHYRG  120 (168)
T ss_pred             --CCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHhh
Confidence              9999999999999999998    5667888888888444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.18  E-value=1.3e-10  Score=76.89  Aligned_cols=65  Identities=18%  Similarity=0.251  Sum_probs=57.2

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          212 LGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       212 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      +.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35788899999999999999999999999999999999999999999999999999999999874

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.18  E-value=1.6e-07  Score=80.02  Aligned_cols=226  Identities=30%  Similarity=0.332  Sum_probs=180.0

Q ss_pred             CChHHHhHHHHHHHHHHHH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHccCHHHHH
Q 043837           36 CRVKARNSVAEKELSQLLQ---AQSTFDSALKLYDSGEYTKPLEYIDKVVLV--FSPACSKAKLLKVKLLLAAKDYASAI  110 (409)
Q Consensus        36 g~~~~A~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~  110 (409)
                      +.+..+...+...+.....   .......+..+...+++..++..+.. ...  ..+.....+...+.++...+++..++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK-ALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHH-HHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            4555555555555554333   45667777788888999999999887 554  67788899999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHH
Q 043837          111 SETGYLLKEDENNLEALLHRGR-AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVA  189 (409)
Q Consensus       111 ~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A  189 (409)
                      ..+..++...+.........+. ++...++++.|+..+.+++..+|........+......+...         ++++.|
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a  186 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL---------GRYEEA  186 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh---------cCHHHH
Confidence            9999999988887666666666 899999999999999999887763111111344444444444         899999


Q ss_pred             HHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837          190 VEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAA  269 (409)
Q Consensus       190 ~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  269 (409)
                      +..+.+++...+..   ....+..++.++...+++..|+..+..++...|.....+..++..+...+.++++...+.+++
T Consensus       187 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (291)
T COG0457         187 LELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL  263 (291)
T ss_pred             HHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999998872   255789999999999999999999999999999877788888888887778999999999999


Q ss_pred             hhCCC
Q 043837          270 QQSPQ  274 (409)
Q Consensus       270 ~~~p~  274 (409)
                      ...|.
T Consensus       264 ~~~~~  268 (291)
T COG0457         264 ELDPD  268 (291)
T ss_pred             HhCcc
Confidence            99987

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=4.1e-08  Score=80.30  Aligned_cols=273  Identities=19%  Similarity=0.125  Sum_probs=183.4

Q ss_pred             HHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHH
Q 043837           30 SVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASA  109 (409)
Q Consensus        30 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  109 (409)
                      +-++-+|+|..++.................-.+..++..|.+...+.-...    .......+...++.....-++.++-
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~----~~~~~lqAvr~~a~~~~~e~~~~~~   91 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKE----GKATPLQAVRLLAEYLELESNKKSI   91 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccc----ccCChHHHHHHHHHHhhCcchhHHH
Confidence            334556777777666665544434455556677778888877776665533    1122334455556665555665555


Q ss_pred             HHHHHHHHhhC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH
Q 043837          110 ISETGYLLKED--ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLR  187 (409)
Q Consensus       110 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  187 (409)
                      +..+.+.+...  ..+...+..-+.+|..-+++++|+........+     +   +...-..+...+         .+.+
T Consensus        92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-----E---~~Al~VqI~lk~---------~r~d  154 (299)
T KOG3081|consen   92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-----E---AAALNVQILLKM---------HRFD  154 (299)
T ss_pred             HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-----H---HHHHHHHHHHHH---------HHHH
Confidence            55555544432  233345667788999999999999988873322     2   232233344444         7888


Q ss_pred             HHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837          188 VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE  263 (409)
Q Consensus       188 ~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  263 (409)
                      -|...++++.+++.+.      .+..||.++.+    -.++.+|.-+|++.-+..|..+..+...+.|++.+++|++|..
T Consensus       155 ~A~~~lk~mq~ided~------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~  228 (299)
T KOG3081|consen  155 LAEKELKKMQQIDEDA------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES  228 (299)
T ss_pred             HHHHHHHHHHccchHH------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence            8999999999988763      34445555544    3468899999999999888889999999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCC-CCCchHHHHHHHHHH
Q 043837          264 DLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDK-NVDNREEAENKFREI  342 (409)
Q Consensus       264 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~-~~~~~~~a~~~~~~i  342 (409)
                      .++.++..++++++....+..+-..+.+                 ..++...+-...+..||.. ......+.+..|.++
T Consensus       229 lL~eaL~kd~~dpetL~Nliv~a~~~Gk-----------------d~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl  291 (299)
T KOG3081|consen  229 LLEEALDKDAKDPETLANLIVLALHLGK-----------------DAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRL  291 (299)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHhCC-----------------ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999988888777666654                 3344444444455556654 333345556666666


Q ss_pred             HHHH
Q 043837          343 AAAY  346 (409)
Q Consensus       343 ~~ay  346 (409)
                      ..-|
T Consensus       292 ~~qy  295 (299)
T KOG3081|consen  292 VLQY  295 (299)
T ss_pred             HHHh
Confidence            5544

>PRK11906 transcriptional regulator; Provisional

Probab=99.17  E-value=5e-09  Score=93.33  Aligned_cols=159  Identities=12%  Similarity=0.017  Sum_probs=109.8

Q ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHccCCCcH
Q 043837           94 LLKVKLLLAAK---DYASAISETGYLL---KEDENNLEALLHRGRAYYYL---------ADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus        94 ~~~a~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~~  158 (409)
                      +.+|...+..+   ....|+.+|.+++   .++|....+|..++.|++..         .+..+|.+..+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            55566554443   3467778888888   88888888888888877654         134466777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN  238 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  238 (409)
                      .   ++..+|.+....         ++++.|+..|++|+.++|+    .+.+++..|.+..-.|+.++|++.++++++++
T Consensus       339 ~---a~~~~g~~~~~~---------~~~~~a~~~f~rA~~L~Pn----~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        339 K---ILAIMGLITGLS---------GQAKVSHILFEQAKIHSTD----IASLYYYRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             H---HHHHHHHHHHhh---------cchhhHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            7   777777776666         7777777777777777777    66677777777777777777777777777777


Q ss_pred             hhcHHHHHHHHHH-HHhccCHHHHHHHHHHH
Q 043837          239 EELIEALVQRGEA-KLLTEDWEGAVEDLKSA  268 (409)
Q Consensus       239 p~~~~~~~~la~~-~~~~~~~~~A~~~~~~a  268 (409)
                      |.-..+-...-.+ .+-....++|+..|-+-
T Consensus       403 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        403 PRRRKAVVIKECVDMYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             chhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence            7655544443333 34445566666666543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=7.5e-10  Score=79.58  Aligned_cols=97  Identities=33%  Similarity=0.470  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK  172 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~  172 (409)
                      ++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..   .+..++.++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK---AYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh---HHHHHHHHHH
Confidence            4556666666666666666666666666666666666666666666666666666666666666654   5566666655


Q ss_pred             HHHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837          173 KTKSAEDNVSKGKLRVAVEDFKAALALDP  201 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~  201 (409)
                      ..         +++++|...+.++++..|
T Consensus        80 ~~---------~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          80 KL---------GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HH---------HhHHHHHHHHHHHHccCC
Confidence            55         666666666666666554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.16  E-value=2e-09  Score=93.97  Aligned_cols=175  Identities=18%  Similarity=0.161  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH---HHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDE--N----NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS---ELKKA  163 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~  163 (409)
                      +...|.+|...+++++|.++|.++....-  +    -...+...+.++... ++++|+.+|++++.+.-...   .....
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~  116 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC  116 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34457778888888888888888866532  1    123566677777666 99999999999998643222   22334


Q ss_pred             HHHHHHHHHHHHHHhhHHhc-CCHHHHHHHHHHHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-
Q 043837          164 YFALKNLLKKTKSAEDNVSK-GKLRVAVEDFKAALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE-  239 (409)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-  239 (409)
                      +..++.+         +... +++++|+++|++|+++..  +.+.....++..+|.++..+++|++|+..|+++....- 
T Consensus       117 ~~~lA~~---------ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  117 LKELAEI---------YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHH---------HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHH---------HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            4444444         3444 799999999999998643  22233567888999999999999999999999987421 


Q ss_pred             ------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          240 ------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       240 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                            .-...++..+.|++..||+..|...+++....+|....
T Consensus       188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence                  12245677888999999999999999999999986543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.15  E-value=1.3e-09  Score=87.79  Aligned_cols=86  Identities=21%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837           86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK  162 (409)
Q Consensus        86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  162 (409)
                      .+....+++.+|.++...|++++|+.+|+++++..|+.   ..++..+|.++...|++++|+..+.+++...|++..   
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---  107 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS---  107 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---
Confidence            34567778889999999999999999999998877653   457889999999999999999999999999888877   


Q ss_pred             HHHHHHHHHHHH
Q 043837          163 AYFALKNLLKKT  174 (409)
Q Consensus       163 ~~~~l~~~~~~~  174 (409)
                      .+..++.++...
T Consensus       108 ~~~~lg~~~~~~  119 (172)
T PRK02603        108 ALNNIAVIYHKR  119 (172)
T ss_pred             HHHHHHHHHHHc
Confidence            777777777666

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.15  E-value=4.6e-08  Score=80.40  Aligned_cols=184  Identities=16%  Similarity=0.181  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---AL  127 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~  127 (409)
                      .+..+|..+...+..|+|++|+..|+. +....|..   ..+.+.++..+++.++++.|+...++-+.+.|+++.   ++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~-l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEA-LDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            567889999999999999999999998 77776654   678899999999999999999999999999988654   67


Q ss_pred             HHHHHHHHhcC--------ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837          128 LHRGRAYYYLA--------DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL  199 (409)
Q Consensus       128 ~~l~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  199 (409)
                      +..|.+++..=        -..+|+..|+..+...|++.-...+...+..+-..+                         
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L-------------------------  166 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL-------------------------  166 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH-------------------------
Confidence            78888876542        234788889999999999865443444433332222                         


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                              +..-..+|..|.+.|.+..|+.-++.+++..|+   ..+++..+..+|..+|-.++|...- ++|..+
T Consensus       167 --------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N  233 (254)
T COG4105         167 --------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGAN  233 (254)
T ss_pred             --------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhc
Confidence                    223344556666666666666666666665443   2455566666666666666665543 334433

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.8e-10  Score=90.38  Aligned_cols=74  Identities=36%  Similarity=0.616  Sum_probs=66.0

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCccccc
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETG  368 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~~~~  368 (409)
                      .-|-|++||+++.++.+|||++||+|..++||||.+.. ...++.+..|.+||+.|+|+..|+.|.....|+.|+
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq  171 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQ  171 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCcc
Confidence            35789999999999999999999999999999997665 567889999999999999999999999977766544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.14  E-value=1.3e-06  Score=80.24  Aligned_cols=191  Identities=11%  Similarity=0.089  Sum_probs=120.0

Q ss_pred             CCchHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCC
Q 043837           69 GEYTKPLEYIDKVVLVFSPAC-----SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN----LEALLHRGRAYYYLAD  139 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~  139 (409)
                      ++..+-+..|.+++...+|..     ...|...|..|...|+.+.|...|+++++..-..    ..+|..-|..-....+
T Consensus       361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~  440 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN  440 (835)
T ss_pred             CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence            445555555555555555532     2455566666666666666666666666543221    2345555555555566


Q ss_pred             hHHHHHHHHHHHccCCCcHH----------------HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837          140 HDVAQRHFQKGLRLDPEHSE----------------LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH  203 (409)
Q Consensus       140 ~~~A~~~~~~al~~~p~~~~----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  203 (409)
                      ++.|++.++.|... |..+.                ..++|..++......         |-++.....|++++++--- 
T Consensus       441 ~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~---------gtfestk~vYdriidLria-  509 (835)
T KOG2047|consen  441 FEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL---------GTFESTKAVYDRIIDLRIA-  509 (835)
T ss_pred             HHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHhcC-
Confidence            66666666665543 11100                112333344444444         7788888888898887655 


Q ss_pred             ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--hhcHHHHHH---HHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          204 TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--EELIEALVQ---RGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       204 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~---la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                         .+.+-.|.|..+....-++++.+.|++.+.+.  |.-.++|..   .....+.--..+.|...|++|++..|
T Consensus       510 ---TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  510 ---TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             ---CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence               55588899999999999999999999999875  444555543   23333344578999999999999887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.14  E-value=1.8e-10  Score=76.28  Aligned_cols=64  Identities=31%  Similarity=0.426  Sum_probs=46.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837           95 LKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus        95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4667777777777777777777777777777777777777777777777777777777777653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.14  E-value=1.1e-09  Score=78.71  Aligned_cols=99  Identities=31%  Similarity=0.444  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI  242 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  242 (409)
                      ++..++.++...         +++++|+..++++++..|.    ...++..+|.++...+++++|+..+++++...|.+.
T Consensus         2 ~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKL---------GDYDEALEYYEKALELDPD----NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHH---------hcHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            355566666555         9999999999999999998    557899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      .++..++.++...+++++|...+.++++..|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999988874

>PRK15331 chaperone protein SicA; Provisional

Probab=99.14  E-value=2.1e-09  Score=82.28  Aligned_cols=104  Identities=10%  Similarity=0.152  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      .....|..|..++.+|++++|..+|.- +...+|.++..++.+|.|+..+++|++|+..|..+..++++++...+..|.|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~-L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRF-LCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            456779999999999999999999977 7778999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      |..+|+.+.|+.+|..++. .|.+..
T Consensus       115 ~l~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHh-CcchHH
Confidence            9999999999999999998 355443

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.13  E-value=1.6e-10  Score=73.55  Aligned_cols=55  Identities=65%  Similarity=1.020  Sum_probs=51.1

Q ss_pred             hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 043837          296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD  351 (409)
Q Consensus       296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d  351 (409)
                      ++|++||+...++.++|+++|+++++.+|||+.... ..+...|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999998765 6788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.13  E-value=1.8e-07  Score=79.68  Aligned_cols=221  Identities=30%  Similarity=0.388  Sum_probs=185.9

Q ss_pred             ChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHhHHHHHHHH---HHHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837            3 HYSEALDDLNTAIEADPT--LSEAYFHRGSVLRQLCRVKARNSVAEKELS---QLLQAQSTFDSALKLYDSGEYTKPLEY   77 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~A~~~   77 (409)
                      .+..++..+..++...+.  ........+..+...+++..+...+...+.   ........+..+......+++..++..
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
T COG0457          38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL  117 (291)
T ss_pred             hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence            456677888888888876  478888999999999999999888888774   445556667778888888899999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 043837           78 IDKVVLVFSPACSKAKLLKVK-LLLAAKDYASAISETGYLLKEDE---NNLEALLHRGRAYYYLADHDVAQRHFQKGLRL  153 (409)
Q Consensus        78 ~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  153 (409)
                      +.. +....+........... ++...++++.|+..+.+++..+|   .....+..++..+...++++.|+..+.+++..
T Consensus       118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         118 LEK-ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHH-HHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            998 77776776566666666 89999999999999999998777   35566777777788999999999999999999


Q ss_pred             CCC-cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837          154 DPE-HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT  232 (409)
Q Consensus       154 ~p~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  232 (409)
                      .+. ...   .+..++..+...         +++..|+..+..++...|.    ....+..++..+...+.++++...+.
T Consensus       197 ~~~~~~~---~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (291)
T COG0457         197 NPDDDAE---ALLNLGLLYLKL---------GKYEEALEYYEKALELDPD----NAEALYNLALLLLELGRYEEALEALE  260 (291)
T ss_pred             CcccchH---HHHHhhHHHHHc---------ccHHHHHHHHHHHHhhCcc----cHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence            998 465   788888888777         8999999999999999998    56677888888887778999999999


Q ss_pred             HHHhcChh
Q 043837          233 EALNINEE  240 (409)
Q Consensus       233 ~al~~~p~  240 (409)
                      +++...|.
T Consensus       261 ~~~~~~~~  268 (291)
T COG0457         261 KALELDPD  268 (291)
T ss_pred             HHHHhCcc
Confidence            99999887

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.12  E-value=2.8e-09  Score=90.80  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHH-HhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHH
Q 043837           55 AQSTFDSALKL-YDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN---NLEAL  127 (409)
Q Consensus        55 ~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~  127 (409)
                      ....|..|..+ +..++|++|+..|.. .+...|++   +.+++.+|.+|+..|++++|+..|+++++.+|+   .++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~-fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQN-FVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            36678899987 667999999999999 88889987   589999999999999999999999999998887   47789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837          128 LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus       128 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                      +.+|.++..+|++++|+..|+++++..|++...
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            999999999999999999999999999998763

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.12  E-value=7.9e-09  Score=96.79  Aligned_cols=142  Identities=18%  Similarity=0.074  Sum_probs=111.4

Q ss_pred             hCCCcHHH--HHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 043837           85 FSPACSKA--KLLKVKLLLAAKD---YASAISETGYLLKEDENNLEALLHRGRAYYYLA--------DHDVAQRHFQKGL  151 (409)
Q Consensus        85 ~~p~~~~~--~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al  151 (409)
                      ..|.+..+  ++.+|..++...+   ...|+.+|+++++++|+++.++-.++.++....        +...+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            34555544  4556766665544   789999999999999999999998888776542        2345566666666


Q ss_pred             cc--CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837          152 RL--DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS  229 (409)
Q Consensus       152 ~~--~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  229 (409)
                      .+  +|.++.   ++..++......         |++++|...+++++.++|+     ..+|..+|.++...|++++|+.
T Consensus       412 al~~~~~~~~---~~~ala~~~~~~---------g~~~~A~~~l~rAl~L~ps-----~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        412 ALPELNVLPR---IYEILAVQALVK---------GKTDEAYQAINKAIDLEMS-----WLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             hcccCcCChH---HHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCHHHHHH
Confidence            64  555555   666666665555         9999999999999999985     4689999999999999999999


Q ss_pred             HHHHHHhcChhcHH
Q 043837          230 SCTEALNINEELIE  243 (409)
Q Consensus       230 ~~~~al~~~p~~~~  243 (409)
                      .|++|+.++|.++.
T Consensus       475 ~~~~A~~L~P~~pt  488 (517)
T PRK10153        475 AYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHhcCCCCch
Confidence            99999999998875

>PHA03102 Small T antigen; Reviewed

Probab=99.11  E-value=1.5e-10  Score=88.04  Aligned_cols=66  Identities=30%  Similarity=0.572  Sum_probs=58.7

Q ss_pred             hhhhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCc
Q 043837          294 RKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDI  364 (409)
Q Consensus       294 ~~~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~  364 (409)
                      ....+++|||++++  +..+|+++|+++++.+|||+...     +++|++|++||++|+|+.+|.+||.+...
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~   71 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEED   71 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence            35688999999999  99999999999999999999643     35899999999999999999999986543

>PRK15331 chaperone protein SicA; Provisional

Probab=99.11  E-value=2.2e-09  Score=82.14  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=93.9

Q ss_pred             hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccC
Q 043837          178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTED  257 (409)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  257 (409)
                      -.++..|++++|...|+-....+|.    +...+..||.|+..+++|++|+..|..+..++++++...+..|.|++.+|+
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d~~----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYDFY----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence            3445559999999999999999998    677999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          258 WEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       258 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      .+.|+.+|+.+++ .|.+..++..-......++
T Consensus       121 ~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331        121 AAKARQCFELVNE-RTEDESLRAKALVYLEALK  152 (165)
T ss_pred             HHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence            9999999999999 5776666555444444443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.10  E-value=8.7e-08  Score=94.60  Aligned_cols=214  Identities=13%  Similarity=0.167  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--HHHHHHHHHHHHHHh----CCCchHHHHHHH
Q 043837            6 EALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--LQAQSTFDSALKLYD----SGEYTKPLEYID   79 (409)
Q Consensus         6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~a~~~~~----~~~~~~A~~~~~   79 (409)
                      +..+.|++.+..+|+.+-.|+.....++++++.++|...++++|...  .......+.-..++.    -|.-+...+.|+
T Consensus      1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred             cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence            45678999999999999999999999999999999999999998854  122222222222222    244556666777


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--c
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE--H  157 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~  157 (409)
                      + +.+.+ +...++..|.-+|...+++++|.++++..++...+....|..++..++.+++-+.|...+.+|++.-|.  +
T Consensus      1522 R-Acqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1522 R-ACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred             H-HHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence            7 44433 335678888888888888888998888888888877888888888888888888888888888888887  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      ..   .....+.+....         |+.+.+...|+..+.-.|.    ...+|.-+...-.+.++.+.+...|++++.+
T Consensus      1600 v~---~IskfAqLEFk~---------GDaeRGRtlfEgll~ayPK----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1600 VE---FISKFAQLEFKY---------GDAERGRTLFEGLLSAYPK----RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HH---HHHHHHHHHhhc---------CCchhhHHHHHHHHhhCcc----chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            43   445555555444         8888888888888888887    6668888888888888888888888888775

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.09  E-value=4.8e-09  Score=89.37  Aligned_cols=105  Identities=15%  Similarity=0.164  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837           90 SKAKLLKVKLL-LAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF  165 (409)
Q Consensus        90 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  165 (409)
                      ....+..|..+ +..++|++|+..|+..++.+|++   +.+++++|.+|+..|++++|+..|++++...|+++....++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46778888876 56799999999999999999998   579999999999999999999999999999999888777999


Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH  203 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  203 (409)
                      .++.++..+         |++++|+..|+++++..|++
T Consensus       222 klg~~~~~~---------g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        222 KVGVIMQDK---------GDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHc---------CCHHHHHHHHHHHHHHCcCC
Confidence            999999888         99999999999999999984

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=8.6e-09  Score=80.43  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 043837           53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC-----SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEAL  127 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  127 (409)
                      ..+...-..+..++..|+|++|..-|.. ++...|..     ...|.++|.++++++.++.|+..+.++|+++|.+..++
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~-Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQE-ALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHH-HHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            3455566788899999999999999999 88888864     45788899999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          128 LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       128 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..++.+|..+..+++|+..|++++..+|....
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence            99999999999999999999999999999887

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.04  E-value=1.3e-08  Score=75.14  Aligned_cols=101  Identities=27%  Similarity=0.288  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837          126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA  205 (409)
Q Consensus       126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  205 (409)
                      +++.+|.++-.+|+.++|+.+|++++....+......++..++..+..+         |++++|+..+++++...|+++.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L---------G~~deA~~~L~~~~~~~p~~~~   73 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL---------GRYDEALALLEEALEEFPDDEL   73 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHCCCccc
Confidence            4566666666677777777777776665555444444666666666666         6666666666666666565433


Q ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                       +..+...++.++...|++++|+..+-.++.
T Consensus        74 -~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   74 -NAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             444555666677777777777777666554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.00  E-value=2.2e-06  Score=78.67  Aligned_cols=223  Identities=13%  Similarity=0.096  Sum_probs=166.7

Q ss_pred             CChHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHcCChHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhCCC
Q 043837            2 KHYSEALDDLNTAIE-ADPTL-----SEAYFHRGSVLRQLCRVKARNSVAEKELSQ-----LLQAQSTFDSALKLYDSGE   70 (409)
Q Consensus         2 g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~   70 (409)
                      |+..+-+..|..|+. .+|.-     ...|...|..|...|+.+.|...+.++...     ...+..+..-|..-++..+
T Consensus       361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~  440 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN  440 (835)
T ss_pred             CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence            456777888888885 57743     467999999999999999999999998773     2345666777777888899


Q ss_pred             chHHHHHHHHHHHhhCC------------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837           71 YTKPLEYIDKVVLVFSP------------------ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR  132 (409)
Q Consensus        71 ~~~A~~~~~~~~~~~~p------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  132 (409)
                      ++.|+.+..+ +...-.                  .+..+|...+......|-++.....|++++++---.|....+.|.
T Consensus       441 ~~~Al~lm~~-A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm  519 (835)
T KOG2047|consen  441 FEAALKLMRR-ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM  519 (835)
T ss_pred             HHHHHHHHHh-hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999887 332211                  235677788888888999999999999999998888999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHH
Q 043837          133 AYYYLADHDVAQRHFQKGLRLDPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHL  210 (409)
Q Consensus       133 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  210 (409)
                      .+....-+++|.+.|++.+.+.+-  -.+   +|...-...      ..-+..-+.+.|..+|++|++.+|.  ...-.+
T Consensus       520 fLEeh~yfeesFk~YErgI~LFk~p~v~d---iW~tYLtkf------i~rygg~klEraRdLFEqaL~~Cpp--~~aKti  588 (835)
T KOG2047|consen  520 FLEEHKYFEESFKAYERGISLFKWPNVYD---IWNTYLTKF------IKRYGGTKLERARDLFEQALDGCPP--EHAKTI  588 (835)
T ss_pred             HHHhhHHHHHHHHHHHcCCccCCCccHHH---HHHHHHHHH------HHHhcCCCHHHHHHHHHHHHhcCCH--HHHHHH
Confidence            999999999999999999998653  333   333322211      1123336789999999999998883  223445


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          211 YLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       211 ~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      +...+..--.-|--..|+..|++|..
T Consensus       589 yLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  589 YLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            55666666666777777777777654

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.00  E-value=5.6e-10  Score=104.13  Aligned_cols=66  Identities=42%  Similarity=0.768  Sum_probs=61.4

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .+||++||+.++++..+|+++|+++++++|||+...  ..++.+|++|++||++|+||.+|..||...
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa~YD~fG   67 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRANYDKYG   67 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence            589999999999999999999999999999999766  577889999999999999999999999853

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.00  E-value=1.8e-07  Score=74.23  Aligned_cols=217  Identities=19%  Similarity=0.134  Sum_probs=147.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837           21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL   99 (409)
Q Consensus        21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~   99 (409)
                      .+..++.+|..|-.+|-+.-|.-.+.+++...+. +...--.++-+...|+|+.|.+.|+. +++++|....+..++|..
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds-~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS-VLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhh-HhccCCcchHHHhcccee
Confidence            4567788899998888888888888888875433 44444577778888999999999998 999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHccCCCcHHHHHHHHHHHHHHHHHHHHh
Q 043837          100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHF-QKGLRLDPEHSELKKAYFALKNLLKKTKSAE  178 (409)
Q Consensus       100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~  178 (409)
                      ++--|++.-|.+.+.+--+.+|++|---.++-.+-.+. ++.+|...+ +++-..+.+...    |..+...+       
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-dP~~A~tnL~qR~~~~d~e~WG----~~iV~~yL-------  210 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-DPKQAKTNLKQRAEKSDKEQWG----WNIVEFYL-------  210 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-CHHHHHHHHHHHHHhccHhhhh----HHHHHHHH-------
Confidence            99999999999999999999999886433333333333 455665554 444445444332    33333222       


Q ss_pred             hHHhcCCHHHHHHHHHHHHccCCCCc---cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh----cHHHHHHHHHH
Q 043837          179 DNVSKGKLRVAVEDFKAALALDPNHT---AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE----LIEALVQRGEA  251 (409)
Q Consensus       179 ~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~  251 (409)
                           |+..+ ...++++..-..++.   ....+.++.+|..+...|+.++|...|+-++..+--    +--+.+.++.+
T Consensus       211 -----gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l  284 (297)
T COG4785         211 -----GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLL  284 (297)
T ss_pred             -----hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence                 22111 112222222222221   124678999999999999999999999999876542    22344445554


Q ss_pred             HHhcc
Q 043837          252 KLLTE  256 (409)
Q Consensus       252 ~~~~~  256 (409)
                      .....
T Consensus       285 ~q~~~  289 (297)
T COG4785         285 GQDQD  289 (297)
T ss_pred             ccccc
Confidence            44443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.00  E-value=1.3e-08  Score=91.09  Aligned_cols=128  Identities=20%  Similarity=0.140  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837          129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV  208 (409)
Q Consensus       129 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  208 (409)
                      .+-.++...++++.|+..+++..+.+|+      +...++.++...         ++-.+|+..+.+++...|.    +.
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe------v~~~LA~v~l~~---------~~E~~AI~ll~~aL~~~p~----d~  234 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE------VAVLLARVYLLM---------NEEVEAIRLLNEALKENPQ----DS  234 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc------HHHHHHHHHHhc---------CcHHHHHHHHHHHHHhCCC----CH
Confidence            4455666678999999999999998886      344566666655         8889999999999999998    68


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      .++...+..+...++++.|+...++++++.|++...|+.|+.+|..+|++++|+..+..+--..+++
T Consensus       235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~  301 (395)
T PF09295_consen  235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKD  301 (395)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence            8999999999999999999999999999999999999999999999999999998887554443333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.98  E-value=1.2e-09  Score=92.25  Aligned_cols=91  Identities=19%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH
Q 043837          132 RAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY  211 (409)
Q Consensus       132 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  211 (409)
                      .-.+..|.++.|+++|..++.++|....   .+...+.++..+         ++...|+..+..+++++|+    .+.-|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~---l~~kr~sv~lkl---------~kp~~airD~d~A~ein~D----sa~~y  185 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAI---LYAKRASVFLKL---------KKPNAAIRDCDFAIEINPD----SAKGY  185 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhh---hcccccceeeec---------cCCchhhhhhhhhhccCcc----ccccc
Confidence            3345567788888888888888887776   666666666666         8888888888888888888    55677


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837          212 LGLCKVLVKLGRGKDALSSCTEALNIN  238 (409)
Q Consensus       212 ~~la~~~~~~~~~~~A~~~~~~al~~~  238 (409)
                      -.++.+...+|+|++|..++..+.+++
T Consensus       186 kfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  186 KFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             chhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            788888889999999999999998873

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.97  E-value=1.7e-07  Score=77.11  Aligned_cols=199  Identities=20%  Similarity=0.175  Sum_probs=141.2

Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY  164 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  164 (409)
                      ..+..++.-|...++.|+|++|++.|+.+....|..   ..+.+.++.++++.+++++|+..+++-+.+.|+++++.-++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            357889999999999999999999999999998875   45789999999999999999999999999999998866666


Q ss_pred             HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837          165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      +..+.++... ....--+..-..+|+..++..+...|+++- ...+...+.              .+.      ..-..-
T Consensus       112 YlkgLs~~~~-i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-a~dA~~~i~--------------~~~------d~LA~~  169 (254)
T COG4105         112 YLKGLSYFFQ-IDDVTRDQSAARAAFAAFKELVQRYPNSRY-APDAKARIV--------------KLN------DALAGH  169 (254)
T ss_pred             HHHHHHHhcc-CCccccCHHHHHHHHHHHHHHHHHCCCCcc-hhhHHHHHH--------------HHH------HHHHHH
Confidence            6666653221 000001113345778888888888888432 111111111              111      112233


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh---cch-hhhhhhhcccccCC
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM---SKR-KDWYKILGVSKTAS  308 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~-~~~~~~l~~~~~~~  308 (409)
                      -..+|..|.+.|.+..|+.-++.+++..|+.+.+.+.|.........   ... ...-++|+.....+
T Consensus       170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            35678899999999999999999999999888877777666655443   222 34556666554443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.97  E-value=2.2e-07  Score=91.85  Aligned_cols=200  Identities=13%  Similarity=0.079  Sum_probs=165.3

Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHH----HHHHHHHHHHhcCChHHHHHHH
Q 043837           73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-DENNLE----ALLHRGRAYYYLADHDVAQRHF  147 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~----~~~~l~~~~~~~~~~~~A~~~~  147 (409)
                      +..+-+++ .+..+|++.-.|......+++.++.++|.+..++||.. ++...+    .|..+-.....-|.-+.-.+.|
T Consensus      1442 esaeDfer-lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFER-LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             cCHHHHHH-HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            34455556 67789999999999999999999999999999999974 444333    3333333333345666777888


Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837          148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA  227 (409)
Q Consensus       148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  227 (409)
                      ++|.+.....    .+|..|..+|...         +++++|.++|+..++...+    ...+|..++..++...+-+.|
T Consensus      1521 eRAcqycd~~----~V~~~L~~iy~k~---------ek~~~A~ell~~m~KKF~q----~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1521 ERACQYCDAY----TVHLKLLGIYEKS---------EKNDEADELLRLMLKKFGQ----TRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred             HHHHHhcchH----HHHHHHHHHHHHh---------hcchhHHHHHHHHHHHhcc----hhhHHHHHHHHHhcccHHHHH
Confidence            8888765432    2788888899888         9999999999999998886    677999999999999999999


Q ss_pred             HHHHHHHHhcChh--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          228 LSSCTEALNINEE--LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       228 ~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      ...+.+|++.-|.  +.+.....|.+-++.|+.+.+...|+-.+.-+|...++|..+........
T Consensus      1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred             HHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence            9999999999887  88888999999999999999999999999999999999988877765543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.96  E-value=2.3e-08  Score=74.96  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=92.4

Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH---HHHHHHHHH
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI---EALVQRGEA  251 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~  251 (409)
                      ..|..+++.|+|++|++.|+.+....|..+. ...+.+.++.+|++.+++++|+..+++-++++|+++   .+++.+|.+
T Consensus        15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            3455666669999999999999999997665 678999999999999999999999999999999774   688999999


Q ss_pred             HHhccC---------------HHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          252 KLLTED---------------WEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       252 ~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      ++.+..               ..+|...|++.+...|++..+...
T Consensus        94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            999877               889999999999999998765543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.96  E-value=2.1e-08  Score=75.15  Aligned_cols=106  Identities=20%  Similarity=0.291  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA---CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---AL  127 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~  127 (409)
                      .....|..|...+..|+|++|++.|+. +....|.   ...+.+.++.+|+..+++++|+..+++.++++|+++.   ++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~-L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEA-LDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            356778999999999999999999998 7776665   5688999999999999999999999999999998754   78


Q ss_pred             HHHHHHHHhcCC---------------hHHHHHHHHHHHccCCCcHHH
Q 043837          128 LHRGRAYYYLAD---------------HDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus       128 ~~l~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~  160 (409)
                      +.+|.+++.+..               ..+|...|++.+...|++...
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            999999999876               788999999999999988753

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.94  E-value=6e-09  Score=70.77  Aligned_cols=69  Identities=25%  Similarity=0.308  Sum_probs=60.9

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837          215 CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM  283 (409)
Q Consensus       215 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  283 (409)
                      ..+|...+++++|++++++++.++|+++..+..+|.++..+|++.+|++.++++++..|+++.+.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            467888999999999999999999999999999999999999999999999999999998877655443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.94  E-value=3.1e-09  Score=71.03  Aligned_cols=65  Identities=23%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             HHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837          219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM  283 (409)
Q Consensus       219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  283 (409)
                      +..|++++|+..|++++..+|++..+++.+|.+++..|++++|...+++++..+|+++.++..+.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            45677777777777777777777777777777777777777777777777777777666555444

...

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.92  E-value=3.8e-07  Score=77.98  Aligned_cols=262  Identities=16%  Similarity=0.090  Sum_probs=180.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCc
Q 043837            2 KHYSEALDDLNTAIEADPTLS---EAYFHRGSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDSGEY   71 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~~~   71 (409)
                      .++++|+..+.+.|..-.+..   ..+-.+..+...+|.+++++...-..+...       ...+.+.+.+...-+.-++
T Consensus        20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f   99 (518)
T KOG1941|consen   20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF   99 (518)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            357788888888887543322   234445678889999998876665554422       2233344455555555567


Q ss_pred             hHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCh
Q 043837           72 TKPLEYIDKVVLVFSPAC-----SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADH  140 (409)
Q Consensus        72 ~~A~~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~  140 (409)
                      .+++.+-.. .+......     ..+...++..+.-++.++++++.|+++++...++.      .++..+|..|..+.++
T Consensus       100 ~kt~~y~k~-~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~  178 (518)
T KOG1941|consen  100 HKTISYCKT-CLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY  178 (518)
T ss_pred             hhHHHHHHH-HhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence            777776654 44443222     35677799999999999999999999998754432      3678999999999999


Q ss_pred             HHHHHHHHHHHccCCCc----HH---HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC--CCccchHHHH
Q 043837          141 DVAQRHFQKGLRLDPEH----SE---LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP--NHTAHNVHLY  211 (409)
Q Consensus       141 ~~A~~~~~~al~~~p~~----~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~  211 (409)
                      ++|+.+..+|.++....    ..   -..+++.++..+..+         |..-.|.++.+++.++.-  .+....+...
T Consensus       179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~---------G~LgdA~e~C~Ea~klal~~Gdra~~arc~  249 (518)
T KOG1941|consen  179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL---------GRLGDAMECCEEAMKLALQHGDRALQARCL  249 (518)
T ss_pred             hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh---------cccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            99999999998864321    11   112445555555555         999999999999987543  3333366778


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHH-----HHHHHHHHHhhCC
Q 043837          212 LGLCKVLVKLGRGKDALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEG-----AVEDLKSAAQQSP  273 (409)
Q Consensus       212 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~-----A~~~~~~al~~~p  273 (409)
                      .-+|.+|...|+.+.|..-|+.|.....      ....++...|.+.....-..+     |++.-++++++..
T Consensus       250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~  322 (518)
T KOG1941|consen  250 LCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS  322 (518)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence            8899999999999999999999986532      234555666666655444443     7777777776643

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2e-08  Score=84.62  Aligned_cols=107  Identities=19%  Similarity=0.256  Sum_probs=97.7

Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  250 (409)
                      ......++.+++.++|..|+..|.+.|+..-.++..++.+|.|+|.|.+.+|+|..|+..|.+++.++|.+..++++-|.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            34456688888889999999999999998888888899999999999999999999999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          251 AKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       251 ~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      |++.+.++.+|+.+.+..++++.+...
T Consensus       162 c~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            999999999999999999888755443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.90  E-value=6.2e-08  Score=86.91  Aligned_cols=121  Identities=23%  Similarity=0.305  Sum_probs=104.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837           95 LKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus        95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      .+..++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+..   .+...+..+...
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---LL~~Qa~fLl~k  247 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---LLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhc
Confidence            3445566778999999999999998875   5667899999999999999999999999999876   666666666555


Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  234 (409)
                               ++++.|+.+.++++.+.|+    ....|..|+.+|..+|+++.|+..++.+
T Consensus       248 ---------~~~~lAL~iAk~av~lsP~----~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  248 ---------KKYELALEIAKKAVELSPS----EFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             ---------CCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence                     9999999999999999999    7889999999999999999999877754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.90  E-value=6.6e-09  Score=69.45  Aligned_cols=58  Identities=28%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..|++++|+..|++++..+|++..+++.++.+|...|++++|...+++++..+|+++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence            4455555555555555555555555555555555555555555555555555555444

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.90  E-value=3.8e-07  Score=70.59  Aligned_cols=153  Identities=18%  Similarity=0.164  Sum_probs=125.9

Q ss_pred             HHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHH
Q 043837           33 RQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISE  112 (409)
Q Consensus        33 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~  112 (409)
                      .+.=+.+.+.....+.+...+.....+..+..+.+.|++.+|..+|.+.+......++..++.++...+..+++..|...
T Consensus        67 ~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t  146 (251)
T COG4700          67 QQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT  146 (251)
T ss_pred             HHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence            34445556666677777788888899999999999999999999999966667788999999999999999999999999


Q ss_pred             HHHHHhhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHH
Q 043837          113 TGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAV  190 (409)
Q Consensus       113 ~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~  190 (409)
                      ++++.+.+|.  .++....++.++..+|.+.+|...|+.++...|+..    .....+..+..+         |+..+|.
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~----ar~~Y~e~La~q---------gr~~ea~  213 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ----ARIYYAEMLAKQ---------GRLREAN  213 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH----HHHHHHHHHHHh---------cchhHHH
Confidence            9999999886  577889999999999999999999999999999865    344445555554         7666666


Q ss_pred             HHHHHHHc
Q 043837          191 EDFKAALA  198 (409)
Q Consensus       191 ~~~~~al~  198 (409)
                      .-+..+.+
T Consensus       214 aq~~~v~d  221 (251)
T COG4700         214 AQYVAVVD  221 (251)
T ss_pred             HHHHHHHH
Confidence            55554443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.88  E-value=3.6e-06  Score=80.19  Aligned_cols=234  Identities=13%  Similarity=0.078  Sum_probs=151.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      +++.+|+..+.+.++..|+...+....|.++.++|+.+                                 +|..+++. 
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~---------------------------------ea~~~Le~-   68 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD---------------------------------EALKLLEA-   68 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch---------------------------------hHHHHHhh-
Confidence            35667777777777777777666666666666665544                                 44444443 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      .-...+++...+-.+-.||..++++++|..+|++++..+|+ .+.++.+-.+|.+.+.|.+=.+.--+..+..|.++-. 
T Consensus        69 ~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy-  146 (932)
T KOG2053|consen   69 LYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY-  146 (932)
T ss_pred             hccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch-
Confidence            44455667788888899999999999999999999999998 7777788888888887776555555555566776652 


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH--hcC
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL--NIN  238 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~  238 (409)
                       .|..+..+...+..-+.....--..-|....++.++.. +-..  ..++. ..-.++..++++++|...+..-+  .+.
T Consensus       147 -fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s--~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~  222 (932)
T KOG2053|consen  147 -FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIES--EAEII-LYLLILELQGKYQEALEFLAITLAEKLT  222 (932)
T ss_pred             -HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccch--HHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence             34444443333211111111112334555666666665 2211  22222 23356677888999999884332  334


Q ss_pred             hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       239 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      +.+..........+..+++|.+-.+...+++...+++
T Consensus       223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            4455555566777788889999888888888888886

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=98.87  E-value=5.4e-09  Score=82.54  Aligned_cols=65  Identities=29%  Similarity=0.463  Sum_probs=56.5

Q ss_pred             hhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          296 DWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       296 ~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      +||++||+.+.  .+..+|+++|++++..+|||+...    .+..+...+..|++||++|+||.+|..|.-
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            68999999986  567999999999999999999543    233467789999999999999999999974

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=4.8e-09  Score=89.48  Aligned_cols=68  Identities=53%  Similarity=0.905  Sum_probs=63.3

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ..++|.+|++.+.++..+|+++|+++++.+|||++......++.+|+.|++||++|+|+.+|..||..
T Consensus         5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            46899999999999999999999999999999998876547999999999999999999999999984

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.85  E-value=9.3e-08  Score=70.65  Aligned_cols=98  Identities=23%  Similarity=0.137  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh--
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE--  240 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--  240 (409)
                      +++.++.++...         |+.++|+.+|++++....+.+. ...++..+|.++..+|++++|+..+++++...|+  
T Consensus         3 ~~~~~A~a~d~~---------G~~~~Ai~~Y~~Al~~gL~~~~-~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen    3 ALYELAWAHDSL---------GREEEAIPLYRRALAAGLSGAD-RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             hHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence            677788888887         9999999999999997665443 5779999999999999999999999999999888  


Q ss_pred             -cHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          241 -LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       241 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                       +..+...++.++...|++++|++.+-.++.
T Consensus        73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 LNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             788889999999999999999999987775

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.85  E-value=2.4e-06  Score=66.27  Aligned_cols=154  Identities=15%  Similarity=0.097  Sum_probs=122.0

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCcHHHHHHHHHHHHHHHHHHHHh
Q 043837          100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR-LDPEHSELKKAYFALKNLLKKTKSAE  178 (409)
Q Consensus       100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~l~~~~~~~~~~~  178 (409)
                      ..+.=+.+..+....+.+.+-|. ..-.+.++.....+|++.+|..+|.+++. +..++..   .+..++.....+    
T Consensus        66 ~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a---~lLglA~Aqfa~----  137 (251)
T COG4700          66 LQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA---MLLGLAQAQFAI----  137 (251)
T ss_pred             HHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH---HHHHHHHHHHhh----
Confidence            33444666677777777777776 44578899999999999999999999987 4555665   667777777666    


Q ss_pred             hHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837          179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW  258 (409)
Q Consensus       179 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  258 (409)
                           +++..|...+++..+.+|...  .+.....++.++...|++.+|...|+.++...|. +.+....+..+.++|+.
T Consensus       138 -----~~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         138 -----QEFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRL  209 (251)
T ss_pred             -----ccHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence                 999999999999999887644  4557788899999999999999999999998874 67788888999999988


Q ss_pred             HHHHHHHHHHH
Q 043837          259 EGAVEDLKSAA  269 (409)
Q Consensus       259 ~~A~~~~~~al  269 (409)
                      .+|..-+....
T Consensus       210 ~ea~aq~~~v~  220 (251)
T COG4700         210 REANAQYVAVV  220 (251)
T ss_pred             hHHHHHHHHHH
Confidence            88776554443

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.8e-09  Score=85.49  Aligned_cols=69  Identities=43%  Similarity=0.751  Sum_probs=61.7

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCc
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDI  364 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~  364 (409)
                      ..+||.+|||.++++..+|.++|++++.++|||++..  ++..+.|+.|..||++|.|.+.|..||---|-
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~--~e~k~~F~~iAtayeilkd~e~rt~ydyaldh  100 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD--PESKKLFVKIATAYEILKDNETRTQYDYALDH  100 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC--chhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence            3689999999999999999999999999999999876  35558999999999999999999999875443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.83  E-value=2.1e-08  Score=68.05  Aligned_cols=63  Identities=24%  Similarity=0.434  Sum_probs=51.3

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           97 VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        97 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..+|...+++++|+.++++++.++|+++..+..+|.++..+|++.+|+..++++++..|++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            456777888888888888888888888888888888888888888888888888888887776

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=98.83  E-value=8.6e-09  Score=80.79  Aligned_cols=66  Identities=26%  Similarity=0.519  Sum_probs=56.0

Q ss_pred             hhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCC--chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          295 KDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVD--NREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       295 ~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~--~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      .+||++||+.+.  .+..+++++|++++.++|||+...  ++..+...+..|++||++|+||.+|..|.-
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            478999999987  678999999999999999999754  223344567899999999999999999965

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.3e-08  Score=80.28  Aligned_cols=109  Identities=19%  Similarity=0.267  Sum_probs=94.4

Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL  254 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  254 (409)
                      +.++.++...+|..|+.+|.++|.++|.    .+.+|.+.+.|++++++|+.+...+.++++++|+...+++.+|.+...
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~----~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPT----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCC----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence            3455555668999999999999999999    677999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHH
Q 043837          255 TEDWEGAVEDLKSAAQQS-----PQDMNIREALMRAEK  287 (409)
Q Consensus       255 ~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~  287 (409)
                      ...|++|+..++++..+.     |.-.++...|..++.
T Consensus        91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~  128 (284)
T KOG4642|consen   91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK  128 (284)
T ss_pred             hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence            999999999999997653     222456666666653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.83  E-value=7.7e-09  Score=91.66  Aligned_cols=114  Identities=22%  Similarity=0.341  Sum_probs=107.3

Q ss_pred             HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837          174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL  253 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  253 (409)
                      ..++..++..+.++.|+..|.++|+++|+    .+.++-+++.++++.+++..|+..+.++++++|....+|+..|.+..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpn----ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPN----CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCc----ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            34577778889999999999999999999    77799999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          254 LTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       254 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      .++.+.+|+..|+....+.|+++.+...+..+....++
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.80  E-value=1.8e-07  Score=77.76  Aligned_cols=104  Identities=21%  Similarity=0.158  Sum_probs=92.9

Q ss_pred             HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc---HHHHHHHHHHHH
Q 043837          177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL---IEALVQRGEAKL  253 (409)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~  253 (409)
                      +..++..|+|..|...|..-++..|+++. .+.+++.||.+++.+|+++.|...|..+++-.|++   +++++.+|.+..
T Consensus       148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~  226 (262)
T COG1729         148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG  226 (262)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence            33444559999999999999999998776 78899999999999999999999999999987754   789999999999


Q ss_pred             hccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          254 LTEDWEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       254 ~~~~~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      .+|+.++|...|+++++..|+.+.+...
T Consensus       227 ~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         227 RLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999998775543

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.78  E-value=2.5e-07  Score=78.90  Aligned_cols=58  Identities=50%  Similarity=0.691  Sum_probs=51.6

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCC------CchHHHHHHHHHHHHHHHhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV------DNREEAENKFREIAAAYEVLGD  351 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~------~~~~~a~~~~~~i~~ay~~l~d  351 (409)
                      ..++|++|+++++++.++|+++|+++++++|||+..      +..+.+++++++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999953      2346789999999999999974

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.77  E-value=1.9e-07  Score=77.58  Aligned_cols=101  Identities=20%  Similarity=0.194  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN  169 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~  169 (409)
                      .+..|.-++..|+|..|...|..-++..|++   +.++++||.+++.+|+++.|...|..+.+-.|+++.....++.++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            3444444455555555555555555554442   3344555555555555555555555555544444443334444444


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      +...+         ++.++|...|+++++..|+
T Consensus       224 ~~~~l---------~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         224 SLGRL---------GNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHh---------cCHHHHHHHHHHHHHHCCC
Confidence            44444         4444444444444444444

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.5e-08  Score=88.77  Aligned_cols=66  Identities=39%  Similarity=0.650  Sum_probs=62.7

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      +..|.|.+||+..+++.++||+.|+++|...||||+..  +.|++.|+.+..||++++|+++|..||.
T Consensus       233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~eYd~  298 (490)
T KOG0720|consen  233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRKEYDL  298 (490)
T ss_pred             cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            36789999999999999999999999999999999984  7899999999999999999999999987

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.75  E-value=1.5e-06  Score=63.08  Aligned_cols=97  Identities=22%  Similarity=0.317  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHH
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL----EALLHRGRA  133 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~  133 (409)
                      .-.+++.+...|+.+.|++.|.+ ++.+.|..+.+|.+++..+.-.|+.++|++.+++++++.....    .++...|.+
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~q-al~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQ-ALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHH-HHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            34456666667777777777777 7777777777777777777777777777777777777654332    356677777


Q ss_pred             HHhcCChHHHHHHHHHHHccCC
Q 043837          134 YYYLADHDVAQRHFQKGLRLDP  155 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p  155 (409)
                      |..+|+.+.|...|+.+-.+-.
T Consensus       125 yRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHhCchHHHHHhHHHHHHhCC
Confidence            7777777777777777666543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=8.6e-06  Score=77.01  Aligned_cols=254  Identities=19%  Similarity=0.116  Sum_probs=154.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      |-.++|+.+|.++-..|        .+-.+|...|.+++|.+.++.. .....-..+|+.|..+-..++.+.|+++|++.
T Consensus       814 gMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~-DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  814 GMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETK-DRIHLRNTYYNYAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             hhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhc-cceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence            34455555555543322        4445666666666665554432 11122234566666677777888888888763


Q ss_pred             ---------HHhhCC----------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---------------------CC
Q 043837           82 ---------VLVFSP----------ACSKAKLLKVKLLLAAKDYASAISETGYLLKE---------------------DE  121 (409)
Q Consensus        82 ---------~~~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------~p  121 (409)
                               ++..+|          .+...|...|..+...|+.+.|+.+|..+-..                     ..
T Consensus       885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~es  964 (1416)
T KOG3617|consen  885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEES  964 (1416)
T ss_pred             CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhc
Confidence                     233334          34567778899999999999999999988542                     23


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHc------cCCCcHHHHHHHHHHHHHHH--HHHHHhhHHh-cC-CHHHHHH
Q 043837          122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLR------LDPEHSELKKAYFALKNLLK--KTKSAEDNVS-KG-KLRVAVE  191 (409)
Q Consensus       122 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~~l~~~~~--~~~~~~~~~~-~~-~~~~A~~  191 (409)
                      .+..+.|.+|+.|...|++.+|+..|.+|-.      +...+.- ..-+.+++..-.  .+-.+..+++ .| +...|+.
T Consensus       965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~-~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen  965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM-KDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred             ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence            4556889999999999999999998877644      3322221 011222221110  1111111221 13 5556665


Q ss_pred             HHHHH------Hc-----------------cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHH------HHhcC----
Q 043837          192 DFKAA------LA-----------------LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE------ALNIN----  238 (409)
Q Consensus       192 ~~~~a------l~-----------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------al~~~----  238 (409)
                      +|.+|      ++                 ++|+.   .+.++..-+..+....+|++|+..+-.      |+.+.    
T Consensus      1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s---Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS---DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred             HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC---CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            55533      11                 33332   566777778888888889888876543      33331    


Q ss_pred             ------------h---------hcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837          239 ------------E---------ELIEALVQRGEAKLLTEDWEGAVEDLKSA  268 (409)
Q Consensus       239 ------------p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~a  268 (409)
                                  |         .-..++..+|.+..++|.|..|.+-|.+|
T Consensus      1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence                        1         12467788999999999999998887765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.74  E-value=4.3e-07  Score=65.90  Aligned_cols=92  Identities=29%  Similarity=0.339  Sum_probs=82.7

Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh----cHHHHHHHHHHHHhc
Q 043837          180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE----LIEALVQRGEAKLLT  255 (409)
Q Consensus       180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~  255 (409)
                      +.+.|+.+.|++.|.+++.+.|.    .+.+|.|++.++.-+|+.++|+..+++++++...    -..+++.+|.+|..+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            33449999999999999999999    7889999999999999999999999999998543    356789999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCc
Q 043837          256 EDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       256 ~~~~~A~~~~~~al~~~p~~  275 (409)
                      |+.+.|...|+.+-++....
T Consensus       129 g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             CchHHHHHhHHHHHHhCCHH
Confidence            99999999999999987654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.74  E-value=0.00012  Score=63.72  Aligned_cols=263  Identities=17%  Similarity=0.116  Sum_probs=174.7

Q ss_pred             CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPT--LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ-STFDSALKLYDSGEYTKPLEYI   78 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~   78 (409)
                      |+-..|.+.-.++-++-..  .+-+++.-+..-.-.|+++.|..-|+.++..++.-. ..--+-+..-+.|+.+.|+.+-
T Consensus        98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yA  177 (531)
T COG3898          98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYA  177 (531)
T ss_pred             CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence            3444555555555433222  334455557777888999999998888888654322 1222233445568888888888


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CCCCHH---HHHHHHHHHHh-cCChHHHHHHHHHHH
Q 043837           79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE---DENNLE---ALLHRGRAYYY-LADHDVAQRHFQKGL  151 (409)
Q Consensus        79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~---~~~~l~~~~~~-~~~~~~A~~~~~~al  151 (409)
                      ++ +....|..+.++...-...+..|+|+.|+++.+.....   .++-.+   +-..-+..... .-+...|...-..++
T Consensus       178 e~-Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~  256 (531)
T COG3898         178 ER-AAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN  256 (531)
T ss_pred             HH-HHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence            88 78888988888888888888999999999988766543   333221   22222222222 235778888888889


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      ++.|+-..   .-..-+..+.         ..|+..++-.+++.+.+..|..     .    ++.+|....--+.++.-+
T Consensus       257 KL~pdlvP---aav~AAralf---------~d~~~rKg~~ilE~aWK~ePHP-----~----ia~lY~~ar~gdta~dRl  315 (531)
T COG3898         257 KLAPDLVP---AAVVAARALF---------RDGNLRKGSKILETAWKAEPHP-----D----IALLYVRARSGDTALDRL  315 (531)
T ss_pred             hcCCccch---HHHHHHHHHH---------hccchhhhhhHHHHHHhcCCCh-----H----HHHHHHHhcCCCcHHHHH
Confidence            99888776   4444444443         4499999999999999998872     1    223333333334444444


Q ss_pred             HHH---HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          232 TEA---LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       232 ~~a---l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      +++   ..+.|++.+....++..-+.-|++..|...-+.+....|... +...+..+..
T Consensus       316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIee  373 (531)
T COG3898         316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEE  373 (531)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHh
Confidence            444   456889999999999999999999999999999998888743 3444444433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.1e-07  Score=74.25  Aligned_cols=105  Identities=19%  Similarity=0.298  Sum_probs=90.7

Q ss_pred             HHHHhhHHhcCCHHHHHHHHHHHHcc--------CCCCcc------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          174 TKSAEDNVSKGKLRVAVEDFKAALAL--------DPNHTA------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                      ..+++.++..|+|.+|...|..|+..        .|.++.      ....++.|.+.|++..++|-++++.+..++..+|
T Consensus       182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~  261 (329)
T KOG0545|consen  182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP  261 (329)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence            35677777779999999999988752        344432      2456789999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI  278 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  278 (409)
                      .+..+++.+|.++...=+..+|...|.++++++|.-..+
T Consensus       262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999999999999999999999986443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=2e-05  Score=64.73  Aligned_cols=193  Identities=16%  Similarity=0.160  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 043837           25 YFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEY-TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA  103 (409)
Q Consensus        25 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~  103 (409)
                      ...-|.+...+|+..+.+.-+.....       ...+.+..++++.. +..+...++       ....+.+.++.|+.-.
T Consensus       125 R~lhAe~~~~lgnpqesLdRl~~L~~-------~V~~ii~~~e~~~~~ESsv~lW~K-------Rl~~Vmy~~~~~llG~  190 (366)
T KOG2796|consen  125 RILHAELQQYLGNPQESLDRLHKLKT-------VVSKILANLEQGLAEESSIRLWRK-------RLGRVMYSMANCLLGM  190 (366)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHH-------HHHHHHHHHHHHHhcc
Confidence            34457777788887765544443333       33333444444444 444555554       2345677888888889


Q ss_pred             cCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 043837          104 KDYASAISETGYLLKED-ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS  182 (409)
Q Consensus       104 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  182 (409)
                      ++|.-.+..+.++++.+ |..+.....+|.+..+.|+.+.|..+++.+-+....          +...            
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k----------L~~~------------  248 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK----------LDGL------------  248 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----------hhcc------------
Confidence            99999999999999888 556677778999999999988888888865321100          0000            


Q ss_pred             cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHH
Q 043837          183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV  262 (409)
Q Consensus       183 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  262 (409)
                                        ..    ...+..+.+.++.-.+++..|...+.+++..+|.++.+..+.|.|+.-+|+..+|+
T Consensus       249 ------------------q~----~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi  306 (366)
T KOG2796|consen  249 ------------------QG----KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL  306 (366)
T ss_pred             ------------------ch----hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence                              00    23355666667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhhCCCc
Q 043837          263 EDLKSAAQQSPQD  275 (409)
Q Consensus       263 ~~~~~al~~~p~~  275 (409)
                      +.++.+++..|..
T Consensus       307 K~~e~~~~~~P~~  319 (366)
T KOG2796|consen  307 KQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHhccCCcc
Confidence            7777777777764

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=98.70  E-value=4e-08  Score=77.36  Aligned_cols=67  Identities=22%  Similarity=0.413  Sum_probs=57.8

Q ss_pred             hhhhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          294 RKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       294 ~~~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      ..+||.++++.+..  +..+++++|++++..+|||+...    ++..+...+..|++||++|+||.+|..|.-
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            45789999999884  57999999999999999999643    234567789999999999999999999984

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=98.69  E-value=4.5e-08  Score=77.47  Aligned_cols=67  Identities=27%  Similarity=0.418  Sum_probs=56.3

Q ss_pred             hhhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCCc----hHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          294 RKDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVDN----REEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       294 ~~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~~----~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      ..+||++||+...  .+..+++++|++++..+|||+....    +..+......|++||++|+||.+|..|.-
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            3689999999985  5788999999999999999996542    22344556899999999999999999974

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.68  E-value=1e-07  Score=84.98  Aligned_cols=70  Identities=14%  Similarity=0.060  Sum_probs=66.3

Q ss_pred             hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837           85 FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEA---LLHRGRAYYYLADHDVAQRHFQKGLRLD  154 (409)
Q Consensus        85 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~  154 (409)
                      .+|+++.+++++|.+|...|+|++|+..|+++|+++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            468899999999999999999999999999999999999865   9999999999999999999999999973

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.67  E-value=1e-07  Score=65.55  Aligned_cols=66  Identities=29%  Similarity=0.360  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-------hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-------EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      .+.++.++|.+|..+|++++|+.+|++++++.       |....++.++|.++..+|++++|++++++++++.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            57789999999999999999999999999761       2346788999999999999999999999998763

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=9.5e-08  Score=76.86  Aligned_cols=98  Identities=15%  Similarity=0.175  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      +...-+.+..++....|+.|+.+|.+ ++..+|..+..+.++|.|+++..+++.+...+.++++++|+.+..++.+|.+.
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~r-aI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSR-AICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHH-HHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            33445567778888899999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHcc
Q 043837          135 YYLADHDVAQRHFQKGLRL  153 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~  153 (409)
                      .....+++|+..+.++..+
T Consensus        89 l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HhhccccHHHHHHHHHHHH
Confidence            9999999999999999764

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=3.2e-05  Score=62.42  Aligned_cols=143  Identities=7%  Similarity=0.029  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhc-CChHHHHHHHHHHHccCCCcHH---
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYL-ADHDVAQRHFQKGLRLDPEHSE---  159 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~---  159 (409)
                      ...|...+.||.+ .+.++|+.++++++++..+-..      .+..+|.+|..- .++++|+.+|+++-+.......   
T Consensus        74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            4455555666654 4999999999999998765332      456888888775 8999999999999876544322   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH---NVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      ..+.+...+..-..+         ++|.+|+..|+++....-+++..   .-..++.-|.|++-..+.-.+...+++..+
T Consensus       153 ANKC~lKvA~yaa~l---------eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQL---------EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence            233555555555566         99999999999998866554321   123455677888887888888888888888


Q ss_pred             cChhcH
Q 043837          237 INEELI  242 (409)
Q Consensus       237 ~~p~~~  242 (409)
                      ++|...
T Consensus       224 ~dP~F~  229 (288)
T KOG1586|consen  224 LDPAFT  229 (288)
T ss_pred             cCCccc
Confidence            888654

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.66  E-value=4.3e-08  Score=85.48  Aligned_cols=75  Identities=33%  Similarity=0.574  Sum_probs=69.0

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCC----CchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcccccC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV----DNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGM  369 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~----~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~~~~~  369 (409)
                      =|.|++||++.+.+.++|+++||++..++||||.+    +.+.+.|+++.+|.+||+.|+|...|+.|-+...|+.|+.
T Consensus        98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQh  176 (610)
T COG5407          98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQH  176 (610)
T ss_pred             CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCcc
Confidence            47899999999999999999999999999999954    5789999999999999999999999999999888877754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.65  E-value=1.3e-07  Score=84.42  Aligned_cols=65  Identities=26%  Similarity=0.261  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH---HHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA---LVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      .+..++++|.+|..+|++++|+..|+++++++|++.++   |+++|.+|..+|++++|+.++++++++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            78899999999999999999999999999999999865   999999999999999999999999997

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.65  E-value=2.7e-05  Score=68.94  Aligned_cols=190  Identities=14%  Similarity=0.114  Sum_probs=138.5

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHH-ccCCCcHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKE----DENNLEALLHRGRAYYY---LADHDVAQRHFQKGL-RLDPEHSEL  160 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al-~~~p~~~~~  160 (409)
                      ++.+...+-.+|....+|+.-+...+..-.+    .++.+.+.+.+|.++.+   .|+.++|+..+..++ ...+.+++ 
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d-  218 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD-  218 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH-
Confidence            5667778888899999999998888887666    45566777889999998   999999999999954 45566677 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH-hc--
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL-NI--  237 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~--  237 (409)
                        .+..+|.++..+-.....-.....++|+..|.++.+++|+     ...=.|++.++...|...+....+.+.. .+  
T Consensus       219 --~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-----~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~  291 (374)
T PF13281_consen  219 --TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-----YYSGINAATLLMLAGHDFETSEELRKIGVKLSS  291 (374)
T ss_pred             --HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-----ccchHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence              8999999998774332223345689999999999999986     2234566777777675433332222221 11  


Q ss_pred             ---------ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          238 ---------NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       238 ---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                               .-.+...+-.++.+..-.+++++|++.+++++.+.|........+..+.
T Consensus       292 llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~  349 (374)
T PF13281_consen  292 LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK  349 (374)
T ss_pred             HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence                     1234555667888889999999999999999999988766555444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.64  E-value=0.00016  Score=69.44  Aligned_cols=186  Identities=18%  Similarity=0.120  Sum_probs=129.0

Q ss_pred             HHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHH
Q 043837           63 LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDV  142 (409)
Q Consensus        63 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  142 (409)
                      ...+..+++.+|+....+ ++...|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++
T Consensus        17 ~d~ld~~qfkkal~~~~k-llkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGK-LLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHHhhhHHHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            345667888899999988 8999999999999999999999999999988887777788888889999999999999999


Q ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH-HHHHHHc
Q 043837          143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL-CKVLVKL  221 (409)
Q Consensus       143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l-a~~~~~~  221 (409)
                      |..+|++++..+|. ..   .+..+-.++...         +.|.+-.+.--+.-+..|.+    +.+++.. ..+....
T Consensus        96 ~~~~Ye~~~~~~P~-ee---ll~~lFmayvR~---------~~yk~qQkaa~~LyK~~pk~----~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen   96 AVHLYERANQKYPS-EE---LLYHLFMAYVRE---------KSYKKQQKAALQLYKNFPKR----AYYFWSVISLILQSI  158 (932)
T ss_pred             HHHHHHHHHhhCCc-HH---HHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCcc----cchHHHHHHHHHHhc
Confidence            99999999999999 44   333333333333         34433333222333356663    3333333 3333332


Q ss_pred             CCh---------hHHHHHHHHHHhcC-hhcHHH-HHHHHHHHHhccCHHHHHHHHH
Q 043837          222 GRG---------KDALSSCTEALNIN-EELIEA-LVQRGEAKLLTEDWEGAVEDLK  266 (409)
Q Consensus       222 ~~~---------~~A~~~~~~al~~~-p~~~~~-~~~la~~~~~~~~~~~A~~~~~  266 (409)
                      ...         .-|...+++.++.. +-...+ ....-.++..++++++|...+.
T Consensus       159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~  214 (932)
T KOG2053|consen  159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLA  214 (932)
T ss_pred             cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            222         23556667777665 322111 1223356677899999999983

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.63  E-value=5e-07  Score=70.06  Aligned_cols=97  Identities=28%  Similarity=0.268  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837          186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR----------GKDALSSCTEALNINEELIEALVQRGEAKLLT  255 (409)
Q Consensus       186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  255 (409)
                      ++.|.+.++.....+|.    ++..+++-|.+++.+.+          +++|+.-|+++|.++|+..++++.+|.+|..+
T Consensus         7 FE~ark~aea~y~~nP~----DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL----DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH----hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            67788999999999999    67788888888877643          56788899999999999999999999999876


Q ss_pred             cC-----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          256 ED-----------WEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       256 ~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      +.           |++|..+|++|...+|++...+..|..+.
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            53           78899999999999999988887776654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=4e-08  Score=87.43  Aligned_cols=70  Identities=57%  Similarity=0.909  Sum_probs=63.4

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ..++|++|++.+.++..+|+++|+++++.||||+++.....++.++++|.+||++|+|+.+|..||...+
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            3689999999999999999999999999999999776655666789999999999999999999999776

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=98.60  E-value=8.6e-08  Score=68.87  Aligned_cols=52  Identities=35%  Similarity=0.436  Sum_probs=45.4

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG  350 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~  350 (409)
                      ..++|++|++.++++.++|+++|+++++.+|||+...     ...+++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999998422     246788999999984

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.58  E-value=0.00011  Score=64.08  Aligned_cols=246  Identities=17%  Similarity=0.128  Sum_probs=172.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLS-EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ-STFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      |+|+.|.+-|+..+. +|+.- ..+..|-.--..+|..+.|..+...+....+... .....-...+..|+|+.|+++.+
T Consensus       134 G~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd  212 (531)
T COG3898         134 GDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD  212 (531)
T ss_pred             CchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence            789999999987654 44322 2233333344578888888888887766543322 22223335677899999999998


Q ss_pred             HHH--HhhCCCcH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           80 KVV--LVFSPACS-----KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        80 ~~~--~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      ...  ..+.++..     -.+...+.... .-+...|.....+++++.|+...+-..-+..++..|+..++-..++.+.+
T Consensus       213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK  291 (531)
T COG3898         213 AQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK  291 (531)
T ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence            632  11222211     11222222222 34688999999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH---HccCCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837          153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA---LALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS  229 (409)
Q Consensus       153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a---l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  229 (409)
                      ..|...-        ..+|...         .--+.++.-++++   ..+.|+    +.+....++...+..|++..|..
T Consensus       292 ~ePHP~i--------a~lY~~a---------r~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa  350 (531)
T COG3898         292 AEPHPDI--------ALLYVRA---------RSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARA  350 (531)
T ss_pred             cCCChHH--------HHHHHHh---------cCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHH
Confidence            9886432        2222222         2223344444443   446677    78899999999999999999999


Q ss_pred             HHHHHHhcChhcHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhh
Q 043837          230 SCTEALNINEELIEALVQRGEAKLLT-EDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       230 ~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~  271 (409)
                      ..+.+....|.. .++..++.+-... ||-.+...++-++++-
T Consensus       351 ~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         351 KAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            999999999864 4566777776655 9999999999999874

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=2.1e-05  Score=66.97  Aligned_cols=167  Identities=12%  Similarity=-0.003  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCC---HHHHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-DENN---LEALLHRG  131 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~l~  131 (409)
                      +.....+..++..|++.+|....++ ++...|.+..++..--..++.+|+...-...+++++.. +|+-   ..+.-.++
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdk-lL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya  182 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDK-LLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA  182 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHH-HHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence            3344455566667777777777777 67777777666666666777777777777777777665 4443   33344566


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH
Q 043837          132 RAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY  211 (409)
Q Consensus       132 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  211 (409)
                      ..+...|-|++|.+.-+++++++|.+..   +...++.++...         ++..++++...+.-..-....-....-|
T Consensus       183 FgL~E~g~y~dAEk~A~ralqiN~~D~W---a~Ha~aHVlem~---------~r~Keg~eFM~~ted~Wr~s~mlasHNy  250 (491)
T KOG2610|consen  183 FGLEECGIYDDAEKQADRALQINRFDCW---ASHAKAHVLEMN---------GRHKEGKEFMYKTEDDWRQSWMLASHNY  250 (491)
T ss_pred             hhHHHhccchhHHHHHHhhccCCCcchH---HHHHHHHHHHhc---------chhhhHHHHHHhcccchhhhhHHHhhhh
Confidence            6667777777777777777777777766   666666666666         7777777766654332222111112234


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHH
Q 043837          212 LGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       212 ~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      ...+.++...++|+.|++.|++-+
T Consensus       251 WH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  251 WHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHHHhhhcccchhHHHHHHHHHH
Confidence            456666777777777777776544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.57  E-value=1.5e-05  Score=72.71  Aligned_cols=99  Identities=23%  Similarity=0.268  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE  263 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  263 (409)
                      |+...|+.++..|+...|..   ......++|.++...+-...|-..+.+++.+....+-.++.+|..+..+.+.+.|++
T Consensus       621 gn~~~a~~cl~~a~~~~p~~---~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  621 GNSTFAIACLQRALNLAPLQ---QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             CCcHHHHHHHHHHhccChhh---hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            88899999999999988863   334577899999999999999999999999998889999999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHH
Q 043837          264 DLKSAAQQSPQDMNIREALMRA  285 (409)
Q Consensus       264 ~~~~al~~~p~~~~~~~~l~~~  285 (409)
                      .|+.|+.++|+++.+.+.|..+
T Consensus       698 ~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  698 AFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHhcCCCChhhHHHHHHH
Confidence            9999999999999988776554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.56  E-value=8.2e-08  Score=66.06  Aligned_cols=67  Identities=22%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CC-C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 043837           87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKE---DE-N---NLEALLHRGRAYYYLADHDVAQRHFQKGLRL  153 (409)
Q Consensus        87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  153 (409)
                      |....++.++|.+|..+|++++|+++|++++++   .+ +   ...++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            445678899999999999999999999999975   22 2   2457889999999999999999999999875

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.53  E-value=2.1e-06  Score=66.62  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837            4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL   83 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   83 (409)
                      |+.|.+.++.....+|.+++++++-|.+++.+.++..           .......            +++|+.-|++ ++
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~-----------g~es~~m------------iedAisK~ee-AL   62 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQ-----------GPESKKM------------IEDAISKFEE-AL   62 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS------------HHHHHHH------------HHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccC-----------cchHHHH------------HHHHHHHHHH-HH
Confidence            6789999999999999999999999999988766432           1111122            3455666666 89


Q ss_pred             hhCCCcHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHH
Q 043837           84 VFSPACSKAKLLKVKLLLAAKD-----------YASAISETGYLLKEDENNLE  125 (409)
Q Consensus        84 ~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~  125 (409)
                      .++|+...+++.+|.+|...+.           |++|..+|++++..+|++..
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            9999999999999999987763           55666666666666666543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PHA02624 large T antigen; Provisional

Probab=98.51  E-value=1.7e-07  Score=86.92  Aligned_cols=62  Identities=29%  Similarity=0.553  Sum_probs=56.1

Q ss_pred             cchhhhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837          292 SKRKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARY  358 (409)
Q Consensus       292 ~~~~~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~  358 (409)
                      ....++|++||+.+++  +..+|+++|+++++++|||+...     +++|++|++||++|+|+.++.+|
T Consensus         8 ee~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          8 EESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhhhc
Confidence            3456899999999999  99999999999999999998532     46899999999999999999998

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=2.1e-05  Score=70.23  Aligned_cols=146  Identities=12%  Similarity=0.026  Sum_probs=104.9

Q ss_pred             HHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC--------cHHHHHHHH
Q 043837           27 HRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA--------CSKAKLLKV   97 (409)
Q Consensus        27 ~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~--------~~~~~~~~a   97 (409)
                      .....|++..+...+.......+.. ...+...+-++...|..|++.+|.+.+...-+...|.        .-.+|.++|
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG  290 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG  290 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence            3344445554544443333333221 1234556778888889999999999986533333333        234568999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhh---------CC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           98 KLLLAAKDYASAISETGYLLKE---------DE---------NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        98 ~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      .++++.+.|.-+..+|.++++.         .|         ...+.+|+.|..|...|++-.|.++|.++....-.++.
T Consensus       291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr  370 (696)
T KOG2471|consen  291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR  370 (696)
T ss_pred             eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence            9999999999999999999961         11         23457899999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 043837          160 LKKAYFALKNLLKKTK  175 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~  175 (409)
                         .|.+++.+...-.
T Consensus       371 ---lWLRlAEcCima~  383 (696)
T KOG2471|consen  371 ---LWLRLAECCIMAL  383 (696)
T ss_pred             ---HHHHHHHHHHHHh
Confidence               8999988876543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.47  E-value=4.7e-07  Score=80.60  Aligned_cols=112  Identities=16%  Similarity=0.227  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY  136 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  136 (409)
                      ..-.+|...+..+.|+.|+..|.+ ++.++|+++..+-+++..+++.+++..|+..+.++++.+|....+|+..|.+...
T Consensus         6 e~k~ean~~l~~~~fd~avdlysK-aI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~   84 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSK-AIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA   84 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHH-HHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence            345677888999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837          137 LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK  172 (409)
Q Consensus       137 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~  172 (409)
                      ++.+.+|+..|+....+.|+++.   +...+..+..
T Consensus        85 l~~~~~A~~~l~~~~~l~Pnd~~---~~r~~~Ec~~  117 (476)
T KOG0376|consen   85 LGEFKKALLDLEKVKKLAPNDPD---ATRKIDECNK  117 (476)
T ss_pred             HHHHHHHHHHHHHhhhcCcCcHH---HHHHHHHHHH
Confidence            99999999999999999999998   5555544443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=8.7e-05  Score=70.49  Aligned_cols=229  Identities=14%  Similarity=0.088  Sum_probs=146.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHH--------HHHHHHHH-H-HHHHHHHHHHHhCCCc
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAE--------KELSQLLQ-A-QSTFDSALKLYDSGEY   71 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~~l~~~~~-~-~~~~~~a~~~~~~~~~   71 (409)
                      |+.+.|.+..+-+     .+..+|-++|....+..+.+-|.-.+-        +++..... . .....-|......|-.
T Consensus       742 G~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMl  816 (1416)
T KOG3617|consen  742 GSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGML  816 (1416)
T ss_pred             ccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhH
Confidence            4555555444321     234578888888888888776632221        11111111 0 2223445556677888


Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      ++|+.+|.+ .        .-+-.+-..|...|.|++|.+..+.-=++.-  -..|++.+..+...++.+.|+++|+++-
T Consensus       817 EeA~~lYr~-c--------kR~DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~  885 (1416)
T KOG3617|consen  817 EEALILYRQ-C--------KRYDLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAG  885 (1416)
T ss_pred             HHHHHHHHH-H--------HHHHHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence            999999977 3        2344566788888999999887664322222  3468888999999999999999998852


Q ss_pred             ----------ccCCCcHHH-------HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837          152 ----------RLDPEHSEL-------KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL  214 (409)
Q Consensus       152 ----------~~~p~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  214 (409)
                                .-+|.....       ...|...+..+...         |+.+.|+.+|..|-            -|+.+
T Consensus       886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~---------GemdaAl~~Y~~A~------------D~fs~  944 (1416)
T KOG3617|consen  886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESV---------GEMDAALSFYSSAK------------DYFSM  944 (1416)
T ss_pred             ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcc---------cchHHHHHHHHHhh------------hhhhh
Confidence                      222222110       01333334444333         77888888876543            45566


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          215 CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       215 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      ..+..-+|+.++|-...++     ..+..+.+.+|+.|...|++.+|+..|.+|....
T Consensus       945 VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs  997 (1416)
T KOG3617|consen  945 VRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFS  997 (1416)
T ss_pred             eeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            6667777888887665543     4677889999999999999999999998886543

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=5.4e-07  Score=69.78  Aligned_cols=64  Identities=33%  Similarity=0.587  Sum_probs=59.4

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARY  358 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~  358 (409)
                      -..|++|.|.+..+.++|++.|++++...|||+++++..+|+.+|.-+.+||..|-|+..|.+-
T Consensus        53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~  116 (250)
T KOG1150|consen   53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC  116 (250)
T ss_pred             cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999999999998865543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.5e-05  Score=64.74  Aligned_cols=105  Identities=20%  Similarity=0.296  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHH-------HhhCCCc----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVV-------LVFSPAC----------SKAKLLKVKLLLAAKDYASAISETGYLL  117 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al  117 (409)
                      .......+..+++.|+|.+|...|..++       ++..|..          ...+.+.+.|++..++|-++++.+..++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            3445677888899999888888887643       3334544          3567889999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          118 KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       118 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..+|.+..+|+.+|.++...-+..+|...|.++|+++|.-..
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            999999999999999999999999999999999999997655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.38  E-value=1.8e-05  Score=71.10  Aligned_cols=181  Identities=15%  Similarity=0.095  Sum_probs=117.6

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH----------HHHHHH
Q 043837           95 LKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS----------ELKKAY  164 (409)
Q Consensus        95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~  164 (409)
                      .+..-..+..+.+.-++...+|++++|+.+++|..|+.-..  .-..+|..+++++++......          .....+
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            34444556778888888888888888888888887775322  224566666666654211100          000000


Q ss_pred             HH---HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-Chh
Q 043837          165 FA---LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-NEE  240 (409)
Q Consensus       165 ~~---l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~  240 (409)
                      ..   --.++.....+..+.+.|+.++|++.+...++..|...  +..++.++..+++.++.|.++...+.+.-++ -|.
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~--~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk  328 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD--NLNIRENLIEALLELQAYADVQALLAKYDDISLPK  328 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc--hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence            00   00122222334444455999999999999999887532  5678999999999999999999999886443 356


Q ss_pred             cHHHHHHHHHHHHhc-cC---------------HHHHHHHHHHHHhhCCCcHHHH
Q 043837          241 LIEALVQRGEAKLLT-ED---------------WEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       241 ~~~~~~~la~~~~~~-~~---------------~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      ++...+..|.+..+. ++               -..|++.+.+|++.+|.-+...
T Consensus       329 SAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  329 SATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             hHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            677666666654331 11               2357788999999999877643

The molecular function of this protein is uncertain.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=2.7e-05  Score=64.06  Aligned_cols=147  Identities=19%  Similarity=0.189  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----C--CCCHHHHHH
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVFS-PACSKAKLLKVKLLLAAKDYASAISETGYLLKE----D--ENNLEALLH  129 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~  129 (409)
                      ..+..+..+.-.++|.-.+..+.+ +++.+ |..+.....++.+.++.|+.+.|..+++++-+.    +  ..+..++.+
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~-vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHS-VIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHH-HHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            345567778888999999999999 55555 778999999999999999999999999965432    2  223446778


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVH  209 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  209 (409)
                      .+.+|.-.+++..|...+.+++..||.++.   +.++.+.|+..+         |+..+|++.++.++.+.|.... +-.
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~---a~NnKALcllYl---------g~l~DAiK~~e~~~~~~P~~~l-~es  324 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAV---ANNNKALCLLYL---------GKLKDALKQLEAMVQQDPRHYL-HES  324 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchh---hhchHHHHHHHH---------HHHHHHHHHHHHHhccCCccch-hhh
Confidence            889999999999999999999999999998   888888888888         9999999999999999998654 333


Q ss_pred             HHHHHHHH
Q 043837          210 LYLGLCKV  217 (409)
Q Consensus       210 ~~~~la~~  217 (409)
                      +..++...
T Consensus       325 ~~~nL~tm  332 (366)
T KOG2796|consen  325 VLFNLTTM  332 (366)
T ss_pred             HHHHHHHH
Confidence            44444443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=8.1e-05  Score=60.19  Aligned_cols=187  Identities=12%  Similarity=0.152  Sum_probs=123.0

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHhcCChHH
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED-----EN-NLEALLHRGRAYYYLADHDV  142 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~~~~  142 (409)
                      +.+++|.++|.+               -+..|...++|..|=..|.++-+..     .. ....|...+.+|.+ .++++
T Consensus        28 ~k~eeAadl~~~---------------Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e   91 (288)
T KOG1586|consen   28 NKYEEAAELYER---------------AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE   91 (288)
T ss_pred             cchHHHHHHHHH---------------HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence            456666666655               2334444455555555555554321     11 12344445555544 48999


Q ss_pred             HHHHHHHHHccCCCcHH---HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--chHHHHHHHHHH
Q 043837          143 AQRHFQKGLRLDPEHSE---LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--HNVHLYLGLCKV  217 (409)
Q Consensus       143 A~~~~~~al~~~p~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~la~~  217 (409)
                      |+.++++++.+..+-..   ....+..++.++..-        ..++++||.+|+++-+.......  .....+...+..
T Consensus        92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd--------l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y  163 (288)
T KOG1586|consen   92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD--------LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY  163 (288)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh--------HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence            99999999887654433   223455666665421        17899999999999875543221  133466677777


Q ss_pred             HHHcCChhHHHHHHHHHHhcChhcH-------HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          218 LVKLGRGKDALSSCTEALNINEELI-------EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       218 ~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      -..+++|.+|+..|+++....-++.       ..++.-|.|++...+.-.+...+++..+++|...+.+
T Consensus       164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            8889999999999999887644432       3445678888888999999999999999999876644

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=4.9e-06  Score=70.51  Aligned_cols=106  Identities=17%  Similarity=0.201  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA---CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHR  130 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  130 (409)
                      .+..+-..+..+++.++|..|+..|.+.+....++   ++..|.++|.|.+..|+|..|+..+.+++.++|.+..+++.-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            56677788999999999999999999944444333   467899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          131 GRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      +.|++.+.++.+|...++..+.++.+...
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            99999999999999999999887766554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.30  E-value=2.1e-06  Score=51.27  Aligned_cols=42  Identities=17%  Similarity=-0.045  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR  132 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  132 (409)
                      .++..+|.+|...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467777888888888888888888888888888887777764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00014  Score=59.26  Aligned_cols=176  Identities=18%  Similarity=0.071  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA  163 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  163 (409)
                      ...|..-+.+|...++|++|..++.++++-..++.      .++-..+.....+..+.++..+++++..+.-.+....  
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd--  108 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD--  108 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc--
Confidence            34455567788888999999999999986554432      3455677777788889999999999887532221100  


Q ss_pred             HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----
Q 043837          164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI----  237 (409)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----  237 (409)
                           ..-..++++-..++.-+.++|+.+|++++.+-..+.  ..-...+-..+.++.+..++.+|-..+.+-...    
T Consensus       109 -----tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~  183 (308)
T KOG1585|consen  109 -----TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC  183 (308)
T ss_pred             -----hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence                 011233455555666899999999999988654322  124566778889999999999998887765432    


Q ss_pred             --ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          238 --NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       238 --~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                        .++....+.....+|....+|..|..+++...++.
T Consensus       184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence              34445666777778888889999999999887764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.27  E-value=0.00026  Score=63.92  Aligned_cols=186  Identities=17%  Similarity=0.100  Sum_probs=112.5

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV   82 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   82 (409)
                      +...-++.-.+||+++|+.+.+|..+|.-..  .-..+|...+.+++...+..   +.+.......|..-+..  ..   
T Consensus       183 np~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~~~e~~--~~---  252 (539)
T PF04184_consen  183 NPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEAS---LGKSQFLQHHGHFWEAW--HR---  252 (539)
T ss_pred             CHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHh---hchhhhhhcccchhhhh--hc---
Confidence            5677889999999999999999999886322  22455555555554432221   11111111111110100  00   


Q ss_pred             HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-CCCcHH
Q 043837           83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHFQKGLRL-DPEHSE  159 (409)
Q Consensus        83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~  159 (409)
                       ........+...+|.|..++|+.++|++.++..++..|.  +..++.++..++..++.|.++...+.+-=++ -|+...
T Consensus       253 -Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt  331 (539)
T PF04184_consen  253 -RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT  331 (539)
T ss_pred             -cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence             000112456678999999999999999999999998875  4568899999999999999999999885322 234443


Q ss_pred             HHHHHHHHHHHHHHHHHHh-----hHHhcCC---HHHHHHHHHHHHccCCCC
Q 043837          160 LKKAYFALKNLLKKTKSAE-----DNVSKGK---LRVAVEDFKAALALDPNH  203 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~-----~~~~~~~---~~~A~~~~~~al~~~~~~  203 (409)
                         ..+.-+.+ .....++     .+.++|-   -..|++.+.+|++.+|.-
T Consensus       332 ---i~YTaALL-kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  332 ---ICYTAALL-KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             ---HHHHHHHH-HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence               22222221 1111111     1122221   234677788888888873

The molecular function of this protein is uncertain.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.00013  Score=62.35  Aligned_cols=164  Identities=15%  Similarity=0.055  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL-DPEHSELKKAYFALKNLL  171 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~l~~~~  171 (409)
                      ....+.+..-.|++.+|...++++++..|.+.-++..--.+++.+|+...-...+++++.. +|+-+-..-+.-.++..+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3444566777899999999999999999999888888888999999999999999999987 666654323444555556


Q ss_pred             HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh----cHHHHHH
Q 043837          172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE----LIEALVQ  247 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~  247 (409)
                      ...         |-|++|.+.-++++++++.    ...+...++.++...+++.++.+...+.-..-..    -...|..
T Consensus       186 ~E~---------g~y~dAEk~A~ralqiN~~----D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH  252 (491)
T KOG2610|consen  186 EEC---------GIYDDAEKQADRALQINRF----DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH  252 (491)
T ss_pred             HHh---------ccchhHHHHHHhhccCCCc----chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH
Confidence            666         9999999999999999999    7788999999999999999999998876433211    1234566


Q ss_pred             HHHHHHhccCHHHHHHHHHHHH
Q 043837          248 RGEAKLLTEDWEGAVEDLKSAA  269 (409)
Q Consensus       248 la~~~~~~~~~~~A~~~~~~al  269 (409)
                      .|.++++-+.|+.|++.|.+-+
T Consensus       253 ~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  253 TALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHhhhcccchhHHHHHHHHHH
Confidence            8889999999999999997654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.25  E-value=2.9e-05  Score=69.33  Aligned_cols=224  Identities=13%  Similarity=0.137  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHH------HHHhCCCchHHHHHHHHHH--Hh---------
Q 043837           22 SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL------KLYDSGEYTKPLEYIDKVV--LV---------   84 (409)
Q Consensus        22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~------~~~~~~~~~~A~~~~~~~~--~~---------   84 (409)
                      .-.++..|.+++....+..|+......+.........+..+.      .+....+.++|+.+++-..  +.         
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn  179 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN  179 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence            456777888888888888887766665554443333222222      2233344455554443210  00         


Q ss_pred             ---------hCC------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837           85 ---------FSP------------ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        85 ---------~~p------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  143 (409)
                               .-|            .-..+.......++++.+...+....+.++.+..+.+.++...+..++..|++.+|
T Consensus       180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA  259 (696)
T KOG2471|consen  180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA  259 (696)
T ss_pred             ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence                     001            01234455566777888888888888888888888999999999999999999999


Q ss_pred             HHHHHHHH-cc------CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc-c--------CCC-----
Q 043837          144 QRHFQKGL-RL------DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA-L--------DPN-----  202 (409)
Q Consensus       144 ~~~~~~al-~~------~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~--------~~~-----  202 (409)
                      .+.+...- ..      .|.... ...|.++|.+...+         +.|.-+..+|.+|++ .        .|.     
T Consensus       260 ~KlL~~sni~~~~g~~~T~q~~~-cif~NNlGcIh~~~---------~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl  329 (696)
T KOG2471|consen  260 MKLLLVSNIHKEAGGTITPQLSS-CIFNNNLGCIHYQL---------GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL  329 (696)
T ss_pred             HHHHHhcccccccCccccchhhh-heeecCcceEeeeh---------hhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence            99876531 11      222211 12568888888888         999999999999995 1        111     


Q ss_pred             CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837          203 HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT  255 (409)
Q Consensus       203 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  255 (409)
                      ......++.++.|..|+..|+.-.|.++|.+++...-.+|..|.++|.|.+..
T Consensus       330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            00125688999999999999999999999999999999999999999998753

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.25  E-value=0.00093  Score=60.73  Aligned_cols=145  Identities=17%  Similarity=0.184  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837          121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL  199 (409)
Q Consensus       121 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  199 (409)
                      ......+...+.+....|.++.|...+.++....+.... ...+....+.++-..         |+..+|+..++..+..
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~---------g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ---------GEQEEAIQKLRELLKC  213 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Confidence            345567888888888888888888888888876532211 011333333333333         8888888888777761


Q ss_pred             CCC------------------------------CccchHHHHHHHHHHHHHc------CChhHHHHHHHHHHhcChhcHH
Q 043837          200 DPN------------------------------HTAHNVHLYLGLCKVLVKL------GRGKDALSSCTEALNINEELIE  243 (409)
Q Consensus       200 ~~~------------------------------~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~  243 (409)
                      ...                              .....+.++..+|......      +..++++..|.++++++|+...
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k  293 (352)
T PF02259_consen  214 RLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK  293 (352)
T ss_pred             HhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence            110                              1112456677777777777      7888999999999999999999


Q ss_pred             HHHHHHHHHHhccCH-----------------HHHHHHHHHHHhhCCC
Q 043837          244 ALVQRGEAKLLTEDW-----------------EGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       244 ~~~~la~~~~~~~~~-----------------~~A~~~~~~al~~~p~  274 (409)
                      +|...|..+...=+.                 ..|+..|-+++...++
T Consensus       294 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  294 AWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            999888876544211                 3467777777777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.24  E-value=2.9e-06  Score=66.09  Aligned_cols=54  Identities=28%  Similarity=0.379  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          307 ASISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       307 ~~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      .+..+++++|++++..+|||+...    .+..+...+..|++||++|+||-+|..|.-
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL   60 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML   60 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            357889999999999999998433    334577889999999999999999999986

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.23  E-value=0.0011  Score=58.98  Aligned_cols=172  Identities=16%  Similarity=0.161  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHhhCCCCHHHHH
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVF----SPACSKAKLLKVKLLLA---AKDYASAISETGY-LLKEDENNLEALL  128 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~  128 (409)
                      ...+.-+.+-...+|+.-+.+.+. +...    -+....+.+.+|.++.+   .|+.++|+..+.. +....+.+++.+.
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~-l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVET-LEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHH-hhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            344555667777899999999987 4444    34467788889999998   9999999999999 5555677899999


Q ss_pred             HHHHHHHhc---------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH-------H
Q 043837          129 HRGRAYYYL---------ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE-------D  192 (409)
Q Consensus       129 ~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~-------~  192 (409)
                      .+|.+|-..         ...++|+..|.++..++|+...    -.+++.++...         |.-.+...       .
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~----GIN~AtLL~~~---------g~~~~~~~el~~i~~~  288 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS----GINAATLLMLA---------GHDFETSEELRKIGVK  288 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc----hHHHHHHHHHc---------CCcccchHHHHHHHHH
Confidence            999988542         2478999999999999976542    33444443333         32111111       1


Q ss_pred             HHHHH-ccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837          193 FKAAL-ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI  242 (409)
Q Consensus       193 ~~~al-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  242 (409)
                      +...+ +........+.+.+-.+..+..-.+++++|+..+++++.+.|...
T Consensus       289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            11111 111111112566777888899999999999999999999977644

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.23  E-value=1.4e-06  Score=48.47  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHh
Q 043837           10 DLNTAIEADPTLSEAYFHRGSVLRQLCRVKARN   42 (409)
Q Consensus        10 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   42 (409)
                      +|+++|+++|+++.+|+.+|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            478999999999999999999999999999875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.18  E-value=1.8e-06  Score=48.02  Aligned_cols=32  Identities=22%  Similarity=0.145  Sum_probs=26.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837          113 TGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus       113 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67788888888888888888888888888775

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.18  E-value=3.8e-06  Score=50.17  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837          210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE  250 (409)
Q Consensus       210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  250 (409)
                      ++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45556666666666666666666666666666666655553

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=0.00097  Score=55.13  Aligned_cols=169  Identities=12%  Similarity=0.051  Sum_probs=115.2

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH-HHHHH
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD-VAQRH  146 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~  146 (409)
                      ..-..|+.+... ++.++|.+..+|..+-.|+..++ +..+-++++..+++.+|.+..+|..+-.+...+|++. .-+..
T Consensus        57 E~S~RAl~LT~d-~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef  135 (318)
T KOG0530|consen   57 EKSPRALQLTED-AIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF  135 (318)
T ss_pred             ccCHHHHHHHHH-HHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence            445677777777 78888888888777777766554 5667778888888888888888888877888888777 77788


Q ss_pred             HHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC----
Q 043837          147 FQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG----  222 (409)
Q Consensus       147 ~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~----  222 (409)
                      .+.++..+..+--   +|.....+....         +.|+.-+.+..+.++.+--    +-.+|..+-.+.....    
T Consensus       136 ~~~~l~~DaKNYH---aWshRqW~~r~F---------~~~~~EL~y~~~Lle~Di~----NNSAWN~Ryfvi~~~~~~~~  199 (318)
T KOG0530|consen  136 TKLMLDDDAKNYH---AWSHRQWVLRFF---------KDYEDELAYADELLEEDIR----NNSAWNQRYFVITNTKGVIS  199 (318)
T ss_pred             HHHHHhccccchh---hhHHHHHHHHHH---------hhHHHHHHHHHHHHHHhhh----ccchhheeeEEEEeccCCcc
Confidence            8888887777766   666666666666         7788888887777776654    2224443322222211    


Q ss_pred             --ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837          223 --RGKDALSSCTEALNINEELIEALVQRGEAKLL  254 (409)
Q Consensus       223 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  254 (409)
                        ..+.-+.+..+.|.+.|++..+|..+.-++..
T Consensus       200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  200 KAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence              12334556667777788888887777666654

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.15  E-value=4.6e-06  Score=65.80  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=56.1

Q ss_pred             hhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          295 KDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       295 ~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      .+||+++++...  .+...+.+.|+.+....|||+...    ++..+...-..|++||.+|.||-+|..|--
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            368999999887  678999999999999999998543    344566677899999999999999999965

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.12  E-value=0.00014  Score=63.35  Aligned_cols=142  Identities=16%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY-LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      +|..+.....+.+..+.|..+|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+..   .|......
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---FWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---HHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHH
Confidence            344444555555556666666666654444445555555555444 34444466666666666565555   34333333


Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  250 (409)
                      +..+         ++.+.|..+|++++..-|....                                   ...+|.....
T Consensus        80 l~~~---------~d~~~aR~lfer~i~~l~~~~~-----------------------------------~~~iw~~~i~  115 (280)
T PF05843_consen   80 LIKL---------NDINNARALFERAISSLPKEKQ-----------------------------------SKKIWKKFIE  115 (280)
T ss_dssp             HHHT---------T-HHHHHHHHHHHCCTSSCHHH-----------------------------------CHHHHHHHHH
T ss_pred             HHHh---------CcHHHHHHHHHHHHHhcCchhH-----------------------------------HHHHHHHHHH
Confidence            3333         5555555555555554443110                                   2234444555


Q ss_pred             HHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837          251 AKLLTEDWEGAVEDLKSAAQQSPQDMNIRE  280 (409)
Q Consensus       251 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  280 (409)
                      .-...|+.+......+++.+..|++..+..
T Consensus       116 fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  116 FESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            555556666666666666666666554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.11  E-value=0.00015  Score=63.15  Aligned_cols=114  Identities=14%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcChhc
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK-LGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~  241 (409)
                      +|..+.......         +..+.|...|.+|++..+.    ...+|...|.+-.. .++.+.|...|+.+++..|.+
T Consensus         3 v~i~~m~~~~r~---------~g~~~aR~vF~~a~~~~~~----~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~   69 (280)
T PF05843_consen    3 VWIQYMRFMRRT---------EGIEAARKVFKRARKDKRC----TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD   69 (280)
T ss_dssp             HHHHHHHHHHHH---------HHHHHHHHHHHHHHCCCCS-----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHh---------CChHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence            455555555555         5688888888888865544    55678888888666 455566999999999998988


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHH
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM---NIREALMRAEKAL  289 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~  289 (409)
                      ...|......+...++.+.|...|++++..-|...   .++......+...
T Consensus        70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~  120 (280)
T PF05843_consen   70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY  120 (280)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc
Confidence            88888888888899999999999999988877655   3555444444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.11  E-value=0.00032  Score=65.68  Aligned_cols=160  Identities=13%  Similarity=0.020  Sum_probs=121.4

Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHH-H------HHHHHHHHH----hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837          102 AAKDYASAISETGYLLKEDENNLE-A------LLHRGRAYY----YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus       102 ~~~~~~~A~~~~~~al~~~p~~~~-~------~~~l~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      -.|+-+.++..+.++.+...-... +      |+.....+.    ...+.+.|.+.+.......|+..-   .+...+.+
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l---fl~~~gR~  276 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL---FLFFEGRL  276 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHH
Confidence            458899999999998873221111 1      111111112    234678899999999999999887   77778888


Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh-cHHHHHHHH
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE-LIEALVQRG  249 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la  249 (409)
                      ....         |+.++|++.|++++.....-+......++.+++++..+.+|++|..++.+.++.+.- .....+..|
T Consensus       277 ~~~~---------g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  277 ERLK---------GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHh---------cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            8777         999999999999997655555556678899999999999999999999999987553 344556789


Q ss_pred             HHHHhccCH-------HHHHHHHHHHHhhCC
Q 043837          250 EAKLLTEDW-------EGAVEDLKSAAQQSP  273 (409)
Q Consensus       250 ~~~~~~~~~-------~~A~~~~~~al~~~p  273 (409)
                      .|+..+++.       ++|.+.+.++-.+..
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            999999999       888888888766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.08  E-value=8.1e-06  Score=45.66  Aligned_cols=32  Identities=31%  Similarity=0.394  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      .+|+.+|.++..++++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35555666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.00062  Score=57.54  Aligned_cols=132  Identities=20%  Similarity=0.100  Sum_probs=90.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHhCCCchHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-----AQSTFDSALKLYDSGEYTKPLE   76 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~A~~   76 (409)
                      |++.+|...|..++..+|++.++...++.||...|+.+.|...+...-.....     ...........-...+......
T Consensus       148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~  227 (304)
T COG3118         148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQR  227 (304)
T ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            67889999999999999999999999999999999999887776553222111     1112222222222333333333


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcC
Q 043837           77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN--LEALLHRGRAYYYLA  138 (409)
Q Consensus        77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~  138 (409)
                           ....+|++..+.+.+|..+...|+.+.|++.+-..++.+...  ..+...+-.++...|
T Consensus       228 -----~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         228 -----RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             -----HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                 345589999999999999999999999999998888876543  333344444444444

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.0013  Score=54.44  Aligned_cols=235  Identities=17%  Similarity=0.092  Sum_probs=166.9

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837           99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA-DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA  177 (409)
Q Consensus        99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~  177 (409)
                      ++.+......|+.....+|.++|.+..+|..+-.++..++ +..+-++++..++.-+|.+-.   +|.....+...+   
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ---vWHHRr~ive~l---  125 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ---VWHHRRVIVELL---  125 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh---HHHHHHHHHHHh---
Confidence            3445556788999999999999999999887777776654 678889999999999999998   777777777777   


Q ss_pred             hhHHhcCCHH-HHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837          178 EDNVSKGKLR-VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE  256 (409)
Q Consensus       178 ~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  256 (409)
                            +++. .-++..+.++..+..    +..+|..+-.+....+.++.-+.++.+.|+.+-.+-.+|..+-.+.....
T Consensus       126 ------~d~s~rELef~~~~l~~DaK----NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~  195 (318)
T KOG0530|consen  126 ------GDPSFRELEFTKLMLDDDAK----NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTK  195 (318)
T ss_pred             ------cCcccchHHHHHHHHhcccc----chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEecc
Confidence                  8877 788999999998888    78899999999999999999999999999988777667755433322211


Q ss_pred             ------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-Hh---hcchhhhhhhhccc----ccCCHHHHHHHHHHHHhc
Q 043837          257 ------DWEGAVEDLKSAAQQSPQDMNIREALMRAEKA-LK---MSKRKDWYKILGVS----KTASISEIKRAYKKLALQ  322 (409)
Q Consensus       257 ------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~---~~~~~~~~~~l~~~----~~~~~~e~~~~y~~~a~~  322 (409)
                            ..+.-+.+..+.+.+.|++..++..|.-+... -+   .++-.++-.-|-..    ...-...+...|..-++.
T Consensus       196 ~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~  275 (318)
T KOG0530|consen  196 GVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALA  275 (318)
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhh
Confidence                  23455678888999999999999888877665 12   11112222222112    222245566666444555


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHhcC---Chhhhhh
Q 043837          323 WHPDKNVDNREEAENKFREIAAAYEVLG---DDDKRAR  357 (409)
Q Consensus       323 ~~~d~~~~~~~~a~~~~~~i~~ay~~l~---d~~~~~~  357 (409)
                      .+.+...        ...+..++|+.|+   ||-.+..
T Consensus       276 ~~~~~~~--------~a~~a~~ly~~La~~~DpiR~ny  305 (318)
T KOG0530|consen  276 YKSSAEE--------LARKAVKLYEDLAIKVDPIRKNY  305 (318)
T ss_pred             ccccchH--------HHHHHHHHHHHHhhccCcHHHHH
Confidence            4433221        2333667788887   6665543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.02  E-value=0.00039  Score=49.82  Aligned_cols=108  Identities=20%  Similarity=0.229  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--------cchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--------AHNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      +..++..|..+..++..+..+-|++|...+.++.++..+-|        -..+.++..|+.++..+|+|++++....++|
T Consensus         3 LkeVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL   82 (144)
T PF12968_consen    3 LKEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL   82 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            45667777788888888888999999999999998654322        2356778889999999999999988888887


Q ss_pred             hc-------Chhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          236 NI-------NEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       236 ~~-------~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      ..       +.+.    +.+.+.++.++..+|+.++|+..|+.+-++
T Consensus        83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            53       3333    456678999999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.01  E-value=1.6e-05  Score=44.45  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      .+++.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            455666666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.00096  Score=56.42  Aligned_cols=131  Identities=25%  Similarity=0.288  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH--HH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRG--RA  133 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~--~~  133 (409)
                      ...+..+......+++.+|...+.. ++...|.+..+...++.|+...|+.+.|...+...-....+. ......+  ..
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~-al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~l  212 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQ-ALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHH-HHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHH
Confidence            4445666667777777777777766 667777777777777777777777777666555432211111 1111111  22


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP  201 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  201 (409)
                      +.......+. ..+.+.+..+|++.+   +.+.++..+...         |+.++|.+.+-..++.+.
T Consensus       213 l~qaa~~~~~-~~l~~~~aadPdd~~---aa~~lA~~~~~~---------g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         213 LEQAAATPEI-QDLQRRLAADPDDVE---AALALADQLHLV---------GRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HHHHhcCCCH-HHHHHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcc
Confidence            2222222221 233444555666666   555565555555         666666666666555544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.00  E-value=1.3e-05  Score=44.79  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          208 VHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       208 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                      +.+|+++|.++..++++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3589999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.93  E-value=0.0015  Score=51.63  Aligned_cols=89  Identities=19%  Similarity=0.150  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE  263 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  263 (409)
                      +++++|+..++.++....+... ...+-..++.+.+.++.+++|+..++.....+ =.+..-..+|.++...|+.++|+.
T Consensus       103 ~~~d~A~aqL~~~l~~t~De~l-k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~  180 (207)
T COG2976         103 NNLDKAEAQLKQALAQTKDENL-KALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARA  180 (207)
T ss_pred             ccHHHHHHHHHHHHccchhHHH-HHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHH
Confidence            5555555555555544333211 34455566666666666666666665432210 112234456777777777777777


Q ss_pred             HHHHHHhhCCC
Q 043837          264 DLKSAAQQSPQ  274 (409)
Q Consensus       264 ~~~~al~~~p~  274 (409)
                      .|+++++..++
T Consensus       181 ay~kAl~~~~s  191 (207)
T COG2976         181 AYEKALESDAS  191 (207)
T ss_pred             HHHHHHHccCC
Confidence            77777766533

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.93  E-value=3.1e-05  Score=43.24  Aligned_cols=32  Identities=22%  Similarity=0.114  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDEN  122 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  122 (409)
                      .+++.+|.++..+|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555566666666666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.89  E-value=0.0059  Score=57.34  Aligned_cols=121  Identities=13%  Similarity=0.078  Sum_probs=96.1

Q ss_pred             CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCChHHH
Q 043837           68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL----EALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A  143 (409)
                      ..+.+.|..++.. .....|+.....+..|+++...|+.++|++.+++++.......    -.++.++.++..+.+|++|
T Consensus       246 ~~~~~~a~~lL~~-~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  246 DVPLEEAEELLEE-MLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCCHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            4566788888888 8888999999999999999999999999999999985443322    2578999999999999999


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCH-------HHHHHHHHHHHccC
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL-------RVAVEDFKAALALD  200 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~~~  200 (409)
                      ..++.+.++.+.-+..  ...+..+.++...         ++.       ++|...+.++-...
T Consensus       325 ~~~f~~L~~~s~WSka--~Y~Y~~a~c~~~l---------~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKA--FYAYLAAACLLML---------GREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHhccccHHH--HHHHHHHHHHHhh---------ccchhhhhhHHHHHHHHHHHHHHH
Confidence            9999999987655443  1445556666665         666       88888888776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.024  Score=56.03  Aligned_cols=183  Identities=13%  Similarity=-0.012  Sum_probs=126.1

Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL  167 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l  167 (409)
                      +.+.+|..+|...++.+...+|++.|-++     +++..|...-.+....|.|++-+.++..+.+......--....+.+
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence            56889999999999999999999998765     4567788888899999999999999998877543321111122222


Q ss_pred             HHHHH---------------HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837          168 KNLLK---------------KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT  232 (409)
Q Consensus       168 ~~~~~---------------~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  232 (409)
                      +....               ...-+...++.+.|+.|.-+|.            +..-|..++..+..+|+|+.|+...+
T Consensus      1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~------------~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS------------NVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            22211               1123566677788888777775            34467788888889999998888887


Q ss_pred             HHHhcCh-------------------------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          233 EALNINE-------------------------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       233 ~al~~~p-------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      +|-....                         -+++-+-.+...|...|-+++-+..++.++-+..-+-.....|+.++.
T Consensus      1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred             hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence            7643210                         023344556677888888999888888888776555444444444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.84  E-value=0.0048  Score=48.95  Aligned_cols=120  Identities=13%  Similarity=0.123  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhhCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC
Q 043837          108 SAISETGYLLKEDENNLE---ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG  184 (409)
Q Consensus       108 ~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (409)
                      +.+...++.+..+|.+..   +-..++..+...+++++|+..++.++....+..-...+-.+++.+....         +
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~---------~  140 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ---------K  140 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh---------h
Confidence            555556666666655433   3467889999999999999999999987655544344556677777666         9


Q ss_pred             CHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       185 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                      ++++|+..++....-.     +.+.....+|.++...|+-++|...|+++++..++.
T Consensus       141 k~D~AL~~L~t~~~~~-----w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         141 KADAALKTLDTIKEES-----WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hHHHHHHHHhcccccc-----HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            9999999887644322     245567789999999999999999999999987543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.013  Score=48.28  Aligned_cols=204  Identities=15%  Similarity=0.054  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837           23 EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA  102 (409)
Q Consensus        23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~  102 (409)
                      ..|..-+.+|....++++|...+.++..-.+...++|.-|.                            ++-..+.....
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAK----------------------------ayEqaamLake   83 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAK----------------------------AYEQAAMLAKE   83 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHH----------------------------HHHHHHHHHHH
Confidence            34555566666666666666555555543333333333222                            22222333333


Q ss_pred             ccCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH---HHHHHHHHHHHHHHH
Q 043837          103 AKDYASAISETGYLLKED-----ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE---LKKAYFALKNLLKKT  174 (409)
Q Consensus       103 ~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~l~~~~~~~  174 (409)
                      +..+.++..+++++..+.     |+....-...+--.....++++|++.|++++.+-..+..   ....+...+.++..+
T Consensus        84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen   84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence            444444444444444331     222222222222233445678888888888775433322   223444455555555


Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHcc----CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----ChhcHHHHH
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALAL----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI----NEELIEALV  246 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~  246 (409)
                               .++.+|-..+.+-...    +.-+.  ....+...-.+++...+|..|..+++...++    .|++..++.
T Consensus       164 ---------~kf~Eaa~a~lKe~~~~~~~~~y~~--~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  164 ---------EKFTEAATAFLKEGVAADKCDAYNS--QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             ---------HHhhHHHHHHHHhhhHHHHHhhccc--HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence                     7777776666543322    11110  3445556666777778999999999987765    355566666


Q ss_pred             HHHHHHHhccCHHHHHHHHH
Q 043837          247 QRGEAKLLTEDWEGAVEDLK  266 (409)
Q Consensus       247 ~la~~~~~~~~~~~A~~~~~  266 (409)
                      +|-..| ..|+.++....+.
T Consensus       233 nLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHh-ccCCHHHHHHHHc
Confidence            655443 5567766555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.79  E-value=0.013  Score=53.16  Aligned_cols=109  Identities=15%  Similarity=0.165  Sum_probs=82.4

Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--C-h-----------------
Q 043837          180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--N-E-----------------  239 (409)
Q Consensus       180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~-p-----------------  239 (409)
                      +.+.|+++.|...+.++....+......+.+.+..+.++...|+..+|+..++..+..  . +                 
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL  235 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence            3344999999999999998764432224558888999999999999999999888871  0 0                 


Q ss_pred             --------------hcHHHHHHHHHHHHhc------cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          240 --------------ELIEALVQRGEAKLLT------EDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       240 --------------~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                                    ....++..+|......      +..++++..|+++++++|+....+..++.....
T Consensus       236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK  304 (352)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence                          1134556666666666      788899999999999999988877766665543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.78  E-value=0.0037  Score=55.64  Aligned_cols=150  Identities=15%  Similarity=0.135  Sum_probs=103.2

Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837           78 IDKVVLVFSPACSKAKLLKVKLLLAAKD------------YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  145 (409)
                      +++ .+..+|.+..+|+.++...-..-.            .+.-+..|++||+.+|++...+..+-.+.....+.++..+
T Consensus         8 l~~-~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen    8 LNR-RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             HHH-HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            344 677799999999998876554432            4677889999999999999999988888889999999999


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--------------ccchHHHH
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--------------TAHNVHLY  211 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~~  211 (409)
                      -+++++..+|++..++..|.........         .-.++.....|.+++..-...              ......++
T Consensus        87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~---------~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~  157 (321)
T PF08424_consen   87 KWEELLFKNPGSPELWREYLDFRQSNFA---------SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF  157 (321)
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHHhc---------cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence            9999999999998854444333332211         145666777777666532110              01123444


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          212 LGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       212 ~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      ..++......|-.+.|+..++..+++
T Consensus       158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  158 LRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHHCCchHHHHHHHHHHHHH
Confidence            55555566666666666666666665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.75  E-value=0.0016  Score=50.79  Aligned_cols=94  Identities=19%  Similarity=0.092  Sum_probs=72.1

Q ss_pred             hhHHhcCCHHHHHHHHHHHHccCCCCc--------c----------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          178 EDNVSKGKLRVAVEDFKAALALDPNHT--------A----------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~al~~~~~~~--------~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                      ......++.+.++..+.+++.+...+.        .          ....+...++..+...|++++|+..+++++..+|
T Consensus        14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP   93 (146)
T PF03704_consen   14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP   93 (146)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence            333445889999999999998654321        0          1234556778888899999999999999999999


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      -+..++..+-.+|...|+..+|+..|+++...
T Consensus        94 ~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   94 YDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.68  E-value=0.031  Score=48.75  Aligned_cols=171  Identities=15%  Similarity=0.106  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHccCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYA---SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA  166 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  166 (409)
                      ..++..++.+++..+.++   +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+-...   .+..
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~---~~~~  160 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES---NFDS  160 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc---hHHH
Confidence            456778888998887654   4555555666667887887766666666688899999999998876441111   1111


Q ss_pred             HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCccchHHHHHHHHHHHHHcCChhHH--HHHHHHHHh------
Q 043837          167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTAHNVHLYLGLCKVLVKLGRGKDA--LSSCTEALN------  236 (409)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A--~~~~~~al~------  236 (409)
                      +...+...       .......|...+...+..  .|........+...+-......++....  ++.....+.      
T Consensus       161 ~l~~i~~l-------~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~  233 (278)
T PF08631_consen  161 ILHHIKQL-------AEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSL  233 (278)
T ss_pred             HHHHHHHH-------HhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHh
Confidence            11111111       003445666666666542  3321000111111111111121222222  333333222      


Q ss_pred             ---cChhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          237 ---INEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       237 ---~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                         +.+..    ...+.+.|...++.++|++|..+|+-++.
T Consensus       234 ~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  234 GKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence               11211    23456678899999999999999997763

It is also involved in sporulation [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.66  E-value=0.00039  Score=42.79  Aligned_cols=48  Identities=10%  Similarity=0.087  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      +.++.+|..+.++|+|++|..+.+.++++.|++.++......+...+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence            457788888899999999999999999999998888777666655443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.63  E-value=0.006  Score=55.01  Aligned_cols=171  Identities=19%  Similarity=0.067  Sum_probs=108.4

Q ss_pred             hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837           84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA  163 (409)
Q Consensus        84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  163 (409)
                      ..+|.+.++++.++.++..+|+.+.|.+.+++||-.........+..-..-...|.   +     +.--..+.|.....+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~-----rL~~~~~eNR~ffla  105 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---C-----RLDYRRPENRQFFLA  105 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---c-----ccCCccccchHHHHH
Confidence            44788888888888888888888888888888764322111000000000000000   0     000012445554444


Q ss_pred             HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC-CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh---
Q 043837          164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN-HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE---  239 (409)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---  239 (409)
                      +......+...         |-+..|.++.+-.+.++|. ||   ..+++.+=...++.++++--+..++.......   
T Consensus       106 l~r~i~~L~~R---------G~~rTAlE~~KlLlsLdp~~DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~  173 (360)
T PF04910_consen  106 LFRYIQSLGRR---------GCWRTALEWCKLLLSLDPDEDP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW  173 (360)
T ss_pred             HHHHHHHHHhc---------CcHHHHHHHHHHHHhcCCCCCc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh
Confidence            44444444444         9999999999999999998 54   33455555566777888877877777655211   


Q ss_pred             --hcHHHHHHHHHHHHhccCH---------------HHHHHHHHHHHhhCCC
Q 043837          240 --ELIEALVQRGEAKLLTEDW---------------EGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       240 --~~~~~~~~la~~~~~~~~~---------------~~A~~~~~~al~~~p~  274 (409)
                        .-|..-+.++.+++.+++.               +.|...+++|+...|.
T Consensus       174 ~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  174 LSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             hhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence              1235667888899988888               8999999999999876

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.62  E-value=0.069  Score=52.24  Aligned_cols=205  Identities=17%  Similarity=0.106  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPA--------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-----  124 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----  124 (409)
                      ....|.......++.+|-.++.+......+.        .....-..|.+....+++++|++..+.++..-|.+.     
T Consensus       418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~  497 (894)
T COG2909         418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI  497 (894)
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence            3556777788899999999998844333321        235566778899999999999999999999877643     


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCC--HHHHHHHHHHH----H
Q 043837          125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGK--LRVAVEDFKAA----L  197 (409)
Q Consensus       125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a----l  197 (409)
                      .++..+|.+..-.|++++|..+...+.+....+.. ....|..+       .++.....+|+  +.+....+...    +
T Consensus       498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~-------~~s~il~~qGq~~~a~~~~~~~~~~~q~l  570 (894)
T COG2909         498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL-------QQSEILEAQGQVARAEQEKAFNLIREQHL  570 (894)
T ss_pred             hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            36778899999999999999999998876433221 11122222       22333333362  23333333322    2


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----Chh--cH-HHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          198 ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI----NEE--LI-EALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       198 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~--~~-~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      ...|-+    ......++.++...-+++.+.......+++    .|.  .. -+++.++.+++..|+.++|...+..+..
T Consensus       571 ~q~~~~----~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~  646 (894)
T COG2909         571 EQKPRH----EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER  646 (894)
T ss_pred             hhcccc----hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            222331    222233333333222355555555555543    222  22 2335899999999999999999988877


Q ss_pred             hCC
Q 043837          271 QSP  273 (409)
Q Consensus       271 ~~p  273 (409)
                      +-.
T Consensus       647 l~~  649 (894)
T COG2909         647 LLL  649 (894)
T ss_pred             Hhc
Confidence            643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.61  E-value=0.00011  Score=40.86  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35666666666666666666666666666663

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.56  E-value=0.0032  Score=49.05  Aligned_cols=63  Identities=25%  Similarity=0.113  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      ..+...++..+...|++++|+..+++++..+|.+..++..+-.+|...|+...|+..|+++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            456777888899999999999999999999999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00017  Score=59.14  Aligned_cols=73  Identities=38%  Similarity=0.570  Sum_probs=58.4

Q ss_pred             hhcchhhhhhhhcccc---cCCHHHHHHHHHHHHhccCCCCCC-CchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          290 KMSKRKDWYKILGVSK---TASISEIKRAYKKLALQWHPDKNV-DNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       290 ~~~~~~~~~~~l~~~~---~~~~~e~~~~y~~~a~~~~~d~~~-~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      +..+..+.|.+||++.   .+...+|.++.++....+|||+.. .-.......|+-|+.|+++|+|+.+|..||+..
T Consensus        38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            3445578898998874   556888999999999999999852 122344568999999999999999999999854

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00025  Score=56.56  Aligned_cols=56  Identities=32%  Similarity=0.592  Sum_probs=48.1

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHH-hcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE-VLGD  351 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~-~l~d  351 (409)
                      -.+||.+|++...++.++++.+|.++++++|||...++.  ....|..|-+||+ +|++
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a--daa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA--DAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc--cHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999876643  3457899999998 6653

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.50  E-value=0.06  Score=58.11  Aligned_cols=262  Identities=17%  Similarity=0.192  Sum_probs=159.0

Q ss_pred             ChHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPT--L--SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYI   78 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   78 (409)
                      .|..|+.++++. ...+.  +  ...++.+-.+|...++++.-......    .......+++-...-..|+|..|..+|
T Consensus      1398 ~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~----r~a~~sl~~qil~~e~~g~~~da~~Cy 1472 (2382)
T KOG0890|consen 1398 AYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR----RFADPSLYQQILEHEASGNWADAAACY 1472 (2382)
T ss_pred             HHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH----hhcCccHHHHHHHHHhhccHHHHHHHH
Confidence            466777777774 22221  1  12344445588888888764433322    122234456667777789999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCChHHHHHHHH---------
Q 043837           79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR-AYYYLADHDVAQRHFQ---------  148 (409)
Q Consensus        79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~---------  148 (409)
                      ++ +++.+|.....+...-.+.+..+.+...+...+-.....++..+-++.++. +-+..++|+.-..+..         
T Consensus      1473 e~-~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~ 1551 (2382)
T KOG0890|consen 1473 ER-LIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSV 1551 (2382)
T ss_pred             HH-hhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhH
Confidence            99 899999988888888888888889988888777776665555554444332 3355555554443321         


Q ss_pred             ----HHH-ccCCCcHH-------------------------HHHHHHHHHHHHH---HHHHHhhHH--------------
Q 043837          149 ----KGL-RLDPEHSE-------------------------LKKAYFALKNLLK---KTKSAEDNV--------------  181 (409)
Q Consensus       149 ----~al-~~~p~~~~-------------------------~~~~~~~l~~~~~---~~~~~~~~~--------------  181 (409)
                          +++ .....+.-                         ....|..+-....   .....+...              
T Consensus      1552 ~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~ 1631 (2382)
T KOG0890|consen 1552 ESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDN 1631 (2382)
T ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchh
Confidence                110 00001100                         0000000000000   000000000              


Q ss_pred             ------hc---CCHHHHHHHHHHHHc---cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          182 ------SK---GKLRVAVEDFKAALA---LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       182 ------~~---~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                            ..   .+..+-+-.+++++-   .+|+......+.|...|++....|+++.|..++-+|.+..  -+.++..+|
T Consensus      1632 W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~A 1709 (2382)
T KOG0890|consen 1632 WKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERA 1709 (2382)
T ss_pred             HHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHH
Confidence                  00   112222222333321   2343333478899999999999999999999999998876  678999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhhC
Q 043837          250 EAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       250 ~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      ..++..|+-..|+..+++.++.+
T Consensus      1710 K~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1710 KLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHhhccHHHHHHHHHHHHHhh
Confidence            99999999999999999999765

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.50  E-value=0.061  Score=47.43  Aligned_cols=196  Identities=20%  Similarity=0.095  Sum_probs=136.1

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-
Q 043837           62 ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA----KDYASAISETGYLLKEDENNLEALLHRGRAYYY-  136 (409)
Q Consensus        62 a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-  136 (409)
                      ........++..++..+.... .  -..+.....++.+|...    .+..+|+..|..+.  ....+.+.+.+|.+|.. 
T Consensus        48 ~~~~~~~~~~~~a~~~~~~a~-~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G  122 (292)
T COG0790          48 GAGSAYPPDYAKALKSYEKAA-E--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANG  122 (292)
T ss_pred             cccccccccHHHHHHHHHHhh-h--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcC
Confidence            334455678888888887732 2  23346778888888754    46888999999554  45678899999999988 


Q ss_pred             ---cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          137 ---LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       137 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                         ..+..+|..+|+++........  ......++..+..-...  .--..+...|+..|.++-...      ...+..+
T Consensus       123 ~gv~~d~~~A~~~~~~Aa~~g~~~a--~~~~~~l~~~~~~g~~~--~~~~~~~~~A~~~~~~aa~~~------~~~a~~~  192 (292)
T COG0790         123 RGVPLDLVKALKYYEKAAKLGNVEA--ALAMYRLGLAYLSGLQA--LAVAYDDKKALYLYRKAAELG------NPDAQLL  192 (292)
T ss_pred             CCcccCHHHHHHHHHHHHHcCChhH--HHHHHHHHHHHHcChhh--hcccHHHHhHHHHHHHHHHhc------CHHHHHH
Confidence               5589999999999998754432  11355666655442100  000123357888888887765      2347888


Q ss_pred             HHHHHHH----cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc---------------CHHHHHHHHHHHHhhCCC
Q 043837          214 LCKVLVK----LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE---------------DWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       214 la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---------------~~~~A~~~~~~al~~~p~  274 (409)
                      +|.+|..    ..++.+|..+|.++.+...  ..+.+.++ ++...|               +...|..++..+....+.
T Consensus       193 lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         193 LGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            8888765    4488999999999998866  78888888 666555               777777777777766554


Q ss_pred             c
Q 043837          275 D  275 (409)
Q Consensus       275 ~  275 (409)
                      .
T Consensus       270 ~  270 (292)
T COG0790         270 N  270 (292)
T ss_pred             h
Confidence            3

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.49  E-value=0.044  Score=49.52  Aligned_cols=171  Identities=10%  Similarity=0.066  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH-HHhh---CCCCH---
Q 043837           52 LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY-LLKE---DENNL---  124 (409)
Q Consensus        52 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~---~p~~~---  124 (409)
                      +......++.+..+..+|+...|.+++++++-..           ..+...  .+......... ...+   .+.|-   
T Consensus        37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~-----------e~~~~~--~F~~~~~~~~~g~~rL~~~~~eNR~ff  103 (360)
T PF04910_consen   37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF-----------ERAFHP--SFSPFRSNLTSGNCRLDYRRPENRQFF  103 (360)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------HHHHHH--HhhhhhcccccCccccCCccccchHHH
Confidence            4457778889999999999999999998832221           111100  00000000000 0111   12232   


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837          125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPE-HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH  203 (409)
Q Consensus       125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  203 (409)
                      .+++.....+.+.|-+..|+++.+-.+.+||. ++-.  ++..+-...         ++.++|+--+..++........+
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g--~ll~ID~~A---------Lrs~~y~~Li~~~~~~~~~~~~~  172 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG--VLLFIDYYA---------LRSRQYQWLIDFSESPLAKCYRN  172 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch--hHHHHHHHH---------HhcCCHHHHHHHHHhHhhhhhhh
Confidence            24566677888889999999999999999998 5542  122222111         22377776666666554421110


Q ss_pred             -ccchHHHHHHHHHHHHHcCCh---------------hHHHHHHHHHHhcChhcHHHHH
Q 043837          204 -TAHNVHLYLGLCKVLVKLGRG---------------KDALSSCTEALNINEELIEALV  246 (409)
Q Consensus       204 -~~~~~~~~~~la~~~~~~~~~---------------~~A~~~~~~al~~~p~~~~~~~  246 (409)
                       -...+..-+.++.++...++-               +.|...+.+|+...|.-...+.
T Consensus       173 ~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll  231 (360)
T PF04910_consen  173 WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLL  231 (360)
T ss_pred             hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHH
Confidence             000123778888888888888               8999999999999886544433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.48  E-value=0.00025  Score=39.44  Aligned_cols=30  Identities=20%  Similarity=0.067  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDE  121 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  121 (409)
                      +++.+|.++..+|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455555555555555555555555555555

...

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.083  Score=48.07  Aligned_cols=120  Identities=17%  Similarity=0.107  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHccCCCCcc----------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---Chh-------cHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTA----------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNI---NEE-------LIE  243 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~  243 (409)
                      |-+++|.++-++++......+.          .....+.++..|-.-.|++.+|++....+.+.   .|.       .+.
T Consensus       289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~  368 (629)
T KOG2300|consen  289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ  368 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence            6677888877777764322111          12344557788888899999998887777654   333       356


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHhhcchhhhhhhhcc
Q 043837          244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ-DMNIREALMRAEKALKMSKRKDWYKILGV  303 (409)
Q Consensus       244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  303 (409)
                      .++.+|......+.+++|...|..|.++-.. +-.+.-.+..+-..+...+..++|++|..
T Consensus       369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~  429 (629)
T KOG2300|consen  369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL  429 (629)
T ss_pred             HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh
Confidence            6777888888889999999999999887533 33333334444445556677888888864

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.45  E-value=0.056  Score=49.06  Aligned_cols=120  Identities=8%  Similarity=-0.061  Sum_probs=91.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-QSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |+...|-.-+..++...|..+......+.+...+|.|+.+.+.....-...... ...--.-...+..+++++|.....-
T Consensus       303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~  382 (831)
T PRK15180        303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM  382 (831)
T ss_pred             cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence            566778888888999999999999999999999999999876654432221111 1112233456677899999988876


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN  122 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  122 (409)
                       ++...-.++++...-|-..-.++-++++.-.+++++.++|.
T Consensus       383 -~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        383 -MLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             -HhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence             66666677788777788888899999999999999999875

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.03  Score=51.57  Aligned_cols=247  Identities=13%  Similarity=0.034  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH---HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837            6 EALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS---QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV   82 (409)
Q Consensus         6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   82 (409)
                      ...+.+....+..|.++--.+..+..+...|+.+.|+......+.   ........|+.+....-+.+|.+|...+.. +
T Consensus       251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~-L  329 (546)
T KOG3783|consen  251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL-L  329 (546)
T ss_pred             HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-H
Confidence            344555666677999999899999999999996666666666655   122345567888888888899999998887 5


Q ss_pred             HhhCCCcHHHHHHHH-HHHHHc--------cCHHHHHHHHHHH---HhhCCCCHH--H-HHHHHHHHHhcCChHHHHHHH
Q 043837           83 LVFSPACSKAKLLKV-KLLLAA--------KDYASAISETGYL---LKEDENNLE--A-LLHRGRAYYYLADHDVAQRHF  147 (409)
Q Consensus        83 ~~~~p~~~~~~~~~a-~~~~~~--------~~~~~A~~~~~~a---l~~~p~~~~--~-~~~l~~~~~~~~~~~~A~~~~  147 (409)
                      ...+..+-..|..++ .|++..        ++-++|....+..   +...|.+..  . ....+.-+...+.        
T Consensus       330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~--------  401 (546)
T KOG3783|consen  330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP--------  401 (546)
T ss_pred             HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc--------
Confidence            555555555555555 444322        2333333222222   222222211  1 1111111111110        


Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-CCCccchHHHHHHHHHHHHHcCChhH
Q 043837          148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-PNHTAHNVHLYLGLCKVLVKLGRGKD  226 (409)
Q Consensus       148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~la~~~~~~~~~~~  226 (409)
                           +.+..... .-+..+..++.-.       ......+.. -++..+... -++.......+..+|.++..+|+...
T Consensus       402 -----~~~~~~la-~P~~El~Y~Wngf-------~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~  467 (546)
T KOG3783|consen  402 -----LNASILLA-SPYYELAYFWNGF-------SRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEV  467 (546)
T ss_pred             -----cccccccc-chHHHHHHHHhhc-------ccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence                 11111100 0112222222211       111122222 111111111 01222245566788999999999999


Q ss_pred             HHHHHHHHHhcCh-------hcHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhCCCc
Q 043837          227 ALSSCTEALNINE-------ELIEALVQRGEAKLLTED-WEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       227 A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~  275 (409)
                      |..++..+++...       -.|.+++.+|..++.++. ..++.+++.+|-+...+.
T Consensus       468 a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  468 APKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            9999998884311       137899999999999999 999999999999887554

>PRK10941 hypothetical protein; Provisional

Probab=97.40  E-value=0.0024  Score=54.72  Aligned_cols=78  Identities=19%  Similarity=0.061  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                      ......++-.+|...++++.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|+..++..++..|+++.+......
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            456677888999999999999999999999999999999999999999999999999999999999999876544333

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.40  E-value=0.11  Score=48.03  Aligned_cols=189  Identities=12%  Similarity=0.012  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCChHHHHHHH
Q 043837           72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---DYASAISETGYLLKEDENNLE-ALLHRGRAYYYLADHDVAQRHF  147 (409)
Q Consensus        72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~  147 (409)
                      +++..+|++.+......+...++.++..-...-   .++...+.+++++.+...++. +|..+-..-.+..-...|...|
T Consensus       310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF  389 (656)
T KOG1914|consen  310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF  389 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence            445555555333333334455555555433333   377777788888776444333 4445555555555678888888


Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837          148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA  227 (409)
Q Consensus       148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  227 (409)
                      .+|-+.--....   ++..-+.+.        +..+++..-|...|+-.++..++    .+..-......+..+++-..|
T Consensus       390 ~kaR~~~r~~hh---VfVa~A~mE--------y~cskD~~~AfrIFeLGLkkf~d----~p~yv~~YldfL~~lNdd~N~  454 (656)
T KOG1914|consen  390 KKAREDKRTRHH---VFVAAALME--------YYCSKDKETAFRIFELGLKKFGD----SPEYVLKYLDFLSHLNDDNNA  454 (656)
T ss_pred             HHHhhccCCcch---hhHHHHHHH--------HHhcCChhHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCcchhH
Confidence            888764333222   232222221        12238899999999999999988    455666667777888888999


Q ss_pred             HHHHHHHHhc--Chh-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          228 LSSCTEALNI--NEE-LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       228 ~~~~~~al~~--~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      ...|++++..  .|+ ..+.|...-..-..-|+...+++.-++-....|.+
T Consensus       455 R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~  505 (656)
T KOG1914|consen  455 RALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD  505 (656)
T ss_pred             HHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence            9999999876  443 45677777777788899999888888877777743

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.38  E-value=0.025  Score=50.38  Aligned_cols=146  Identities=12%  Similarity=0.044  Sum_probs=105.5

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHh
Q 043837          111 SETGYLLKEDENNLEALLHRGRAYYYLAD------------HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE  178 (409)
Q Consensus       111 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~  178 (409)
                      ..+++.++.+|.+.++|..+....-..-.            .+.-+..|++||+.+|++..   .+..+-.+....    
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~---L~l~~l~~~~~~----   78 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER---LLLGYLEEGEKV----   78 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh----
Confidence            46788899999999999988876655432            45678899999999999888   444444444444    


Q ss_pred             hHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH---HcCChhHHHHHHHHHHhcCh----------------
Q 043837          179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV---KLGRGKDALSSCTEALNINE----------------  239 (409)
Q Consensus       179 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p----------------  239 (409)
                           -+.++....+++++..+|+    +..+|..+-....   ..-.+......|.+++..-.                
T Consensus        79 -----~~~~~l~~~we~~l~~~~~----~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~  149 (321)
T PF08424_consen   79 -----WDSEKLAKKWEELLFKNPG----SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPEL  149 (321)
T ss_pred             -----CCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhH
Confidence                 6778888899999999998    4555554333222   23356677777777765311                


Q ss_pred             --hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          240 --ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       240 --~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                        ....++..+.......|-.+.|+..++..++++
T Consensus       150 e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  150 EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence              123556677778889999999999999999986

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.35  E-value=0.035  Score=52.98  Aligned_cols=34  Identities=12%  Similarity=-0.026  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      ++++..++..+...|++++|.+.|-++++++.-+
T Consensus       995 ~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen  995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred             ccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence            4556777788888999999999999999987554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.31  E-value=0.14  Score=49.53  Aligned_cols=246  Identities=16%  Similarity=0.120  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHhHHHHHHHHHHH------HHHHHHHHHHHHHhC----C
Q 043837            5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQL-----CRVKARNSVAEKELSQLL------QAQSTFDSALKLYDS----G   69 (409)
Q Consensus         5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~------~~~~~~~~a~~~~~~----~   69 (409)
                      ..|...++.+...  .+..+...+|.||..-     .+.+.|+..+..+.....      .....+..+..++..    .
T Consensus       229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~  306 (552)
T KOG1550|consen  229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK  306 (552)
T ss_pred             hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence            4677777766555  4677888888888755     567888777777766211      122345666666663    2


Q ss_pred             -CchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----CChH
Q 043837           70 -EYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---DYASAISETGYLLKEDENNLEALLHRGRAYYYL----ADHD  141 (409)
Q Consensus        70 -~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~  141 (409)
                       ++..|+.+|.+ +..  -.++.+.+.+|.++..-.   ++..|..+|..|...  .+..+.+.++.+|..-    .+..
T Consensus       307 ~d~~~A~~~~~~-aA~--~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  307 IDYEKALKLYTK-AAE--LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             ccHHHHHHHHHH-HHh--cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence             67789999977 333  345678888888888765   578899999988764  4678888888888753    5788


Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc
Q 043837          142 VAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL  221 (409)
Q Consensus       142 ~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~  221 (409)
                      .|..+++++....+  +.   +...++..+...       . +.+..+...+.......-..+..+...+..........
T Consensus       382 ~A~~~~k~aA~~g~--~~---A~~~~~~~~~~g-------~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~  448 (552)
T KOG1550|consen  382 LAFAYYKKAAEKGN--PS---AAYLLGAFYEYG-------V-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFS  448 (552)
T ss_pred             HHHHHHHHHHHccC--hh---hHHHHHHHHHHc-------c-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccc
Confidence            89999999888772  22   233333333221       0 33333333333333222211110111111111111111


Q ss_pred             C----ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc----cCHHHHHHHHHHHHhhC
Q 043837          222 G----RGKDALSSCTEALNINEELIEALVQRGEAKLLT----EDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       222 ~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~  272 (409)
                      .    +...+...+.++..  ..++.+...++.+|..-    .+++.|...|.++....
T Consensus       449 ~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  449 RGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG  505 (552)
T ss_pred             cccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence            1    22334444444322  34566667777776654    35777777777776654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.31  E-value=0.00052  Score=37.74  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666777777777777777777777777665

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.24  E-value=0.013  Score=43.51  Aligned_cols=84  Identities=11%  Similarity=0.116  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHHcCC---hhHHHHHHHHHHh-cCh-hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGR---GKDALSSCTEALN-INE-ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      .....+++++++....+   ..+.+..++..++ -+| ..-+..+.+|..+.++++|+.|+.+....++..|++.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            46688899999988765   4678889999986 444 346788899999999999999999999999999999998877


Q ss_pred             HHHHHHHHh
Q 043837          282 LMRAEKALK  290 (409)
Q Consensus       282 l~~~~~~~~  290 (409)
                      -..++..+.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            666665554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.24  E-value=0.063  Score=51.80  Aligned_cols=251  Identities=17%  Similarity=0.093  Sum_probs=163.7

Q ss_pred             CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----ChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhC---
Q 043837            2 KHYSEALDDLNTAIEA-----DPTLSEAYFHRGSVLRQLC-----RVKARNSVAEKELSQLLQAQSTFDSALKLYDS---   68 (409)
Q Consensus         2 g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~---   68 (409)
                      .+.+.|+.+|..+...     .-..+.+...+|.+|.+-.     +...|...+..+-. .......+..+..+...   
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~~~a~~~lg~~~~~g~~~  341 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGNPDAQYLLGVLYETGTKE  341 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCCchHHHHHHHHHHcCCcc
Confidence            4788999999998771     1125567889999998854     45556666655443 22234445555555443   


Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CChHHH
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA----KDYASAISETGYLLKEDENNLEALLHRGRAYYYL-ADHDVA  143 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A  143 (409)
                      .++..|.++|..++   .-.+..+.+.++.||..-    .+...|..+++++.+..  ++.+.+.++..+..- +.++.+
T Consensus       342 ~d~~~A~~yy~~Aa---~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~  416 (552)
T KOG1550|consen  342 RDYRRAFEYYSLAA---KAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA  416 (552)
T ss_pred             ccHHHHHHHHHHHH---HcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence            36789999997733   346789999999999753    58899999999999987  455566666555443 777777


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHh---cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS---KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK  220 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~  220 (409)
                      ...+.....+--........+......       .....   ..+...+...+.++....      +..+...++.+|..
T Consensus       417 ~~~~~~~a~~g~~~~q~~a~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~g------~~~a~~~lgd~y~~  483 (552)
T KOG1550|consen  417 LALYLYLAELGYEVAQSNAAYLLDQSE-------EDLFSRGVISTLERAFSLYSRAAAQG------NADAILKLGDYYYY  483 (552)
T ss_pred             HHHHHHHHHhhhhHHhhHHHHHHHhcc-------ccccccccccchhHHHHHHHHHHhcc------CHHHHhhhcceeee
Confidence            766665554433222211111111110       00011   134556666666655433      34477888888876


Q ss_pred             c----CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc---cCHHHHHHHHHHHHhhCCC
Q 043837          221 L----GRGKDALSSCTEALNINEELIEALVQRGEAKLLT---EDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       221 ~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~  274 (409)
                      -    .+++.|...|..+....   +...+++|.++..-   ..+..|..+|.++.+.+..
T Consensus       484 g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  484 GLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR  541 (552)
T ss_pred             cCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence            4    46899999999998776   88999999998642   2278999999998887654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.22  E-value=0.00036  Score=39.39  Aligned_cols=26  Identities=27%  Similarity=0.256  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      +..+|.+|..+|+|++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44556666666666666666666443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.22  E-value=0.0061  Score=43.68  Aligned_cols=96  Identities=14%  Similarity=0.130  Sum_probs=74.9

Q ss_pred             HHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC-----------hhHHHHHHHHHHhcChhcHHH
Q 043837          176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR-----------GKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~  244 (409)
                      ++..++.+|++-+|+++.+..+...+++.. .+.++..-|.++..+..           .-.+++++.++..+.|..+..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~   80 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS   80 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence            466778889999999999999998887653 33566777777765432           246888999999999999888


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      ++.+|.-+-...-|++++.-.++++.+.
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            8888887777777888888777777653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.21  E-value=0.00078  Score=37.04  Aligned_cols=31  Identities=23%  Similarity=0.165  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDEN  122 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  122 (409)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666665

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.049  Score=49.47  Aligned_cols=174  Identities=14%  Similarity=0.011  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKE---DEN-------NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      .+-.++.|-+-.|++.+|++....+.+.   .|.       .+..++.+|......+.++.|...|..|.++-....-..
T Consensus       325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a  404 (629)
T KOG2300|consen  325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA  404 (629)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence            4456778888999999999988877654   344       344678899999999999999999999998754433222


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc------chHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA------HNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      -.-.+++.+|...         ++-+.-.+.+   -.+.|.+..      ....+++..|...+.++++.+|...+.+.+
T Consensus       405 ~~nlnlAi~YL~~---------~~~ed~y~~l---d~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L  472 (629)
T KOG2300|consen  405 FCNLNLAISYLRI---------GDAEDLYKAL---DLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL  472 (629)
T ss_pred             HHHHhHHHHHHHh---------ccHHHHHHHH---HhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            2334445555443         5543332222   234454321      134567778888899999999999999999


Q ss_pred             hcChh------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          236 NINEE------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       236 ~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      +....      ..-.+..++.+....|+..++.....-++.+..+.++
T Consensus       473 kmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  473 KMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD  520 (629)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence            87521      2445677899999999999999988888877654443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.20  E-value=0.13  Score=48.22  Aligned_cols=192  Identities=15%  Similarity=0.009  Sum_probs=145.1

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCcHHHHHHHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD-PEHSELKKAYFAL  167 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~l  167 (409)
                      ....|......-...|+++...-.|++++--.....+.|...+......|+.+-|-..+.++.++. |..+.   .+..-
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~---i~L~~  372 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI---IHLLE  372 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH---HHHHH
Confidence            345677777778899999999999999999888889999999999999999999999998888864 44444   45555


Q ss_pred             HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH---HHHHHHhc--Ch-hc
Q 043837          168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS---SCTEALNI--NE-EL  241 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~--~p-~~  241 (409)
                      +.+....         |++..|...++....-.|.    ...+-..........|+.+.+..   .+.....-  ++ -.
T Consensus       373 a~f~e~~---------~n~~~A~~~lq~i~~e~pg----~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~  439 (577)
T KOG1258|consen  373 ARFEESN---------GNFDDAKVILQRIESEYPG----LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGIL  439 (577)
T ss_pred             HHHHHhh---------ccHHHHHHHHHHHHhhCCc----hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchh
Confidence            5555555         9999999999999988888    66677777778888888888874   33322221  11 12


Q ss_pred             HHHHHHHHHH-HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhh
Q 043837          242 IEALVQRGEA-KLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKD  296 (409)
Q Consensus       242 ~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  296 (409)
                      ...+...++. +.-.++.+.|...+.++++..|++......+...........+.+
T Consensus       440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d  495 (577)
T KOG1258|consen  440 EKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYD  495 (577)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhh
Confidence            3444555554 345678999999999999999999998888877766555444433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.19  E-value=0.0049  Score=44.15  Aligned_cols=93  Identities=12%  Similarity=0.129  Sum_probs=69.6

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHH
Q 043837           61 SALKLYDSGEYTKPLEYIDKVVLVFSPACS---KAKLLKVKLLLAAKD-----------YASAISETGYLLKEDENNLEA  126 (409)
Q Consensus        61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~  126 (409)
                      +|..++..|++-+|+++.++ .+...+++.   ..+...|.++..+..           .-.+++++.++..+.|..+..
T Consensus         2 ~A~~~~~rGnhiKAL~iied-~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~   80 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIED-LISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS   80 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHH-HHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence            46778888888888888888 555555544   455556666654432           346889999999999999888


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837          127 LLHRGRAYYYLADHDVAQRHFQKGLRLD  154 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~  154 (409)
                      ++.+|.-+-....|++++.-.+++|...
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            8888888777777888888888888753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.15  E-value=0.0033  Score=57.29  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=88.1

Q ss_pred             HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG---RGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                      .+..+...+....+..|+..|.+++...|.    ...++.+++.++++.+   +.-.|+..+..+++++|....+++.++
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la  452 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPD----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA  452 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccc----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence            344555666667889999999999999999    7889999999988754   566899999999999999999999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837          250 EAKLLTEDWEGAVEDLKSAAQQSPQDMNI  278 (409)
Q Consensus       250 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~  278 (409)
                      .++..++++.+|+.+...+....|.+...
T Consensus       453 ~aL~el~r~~eal~~~~alq~~~Ptd~a~  481 (758)
T KOG1310|consen  453 RALNELTRYLEALSCHWALQMSFPTDVAR  481 (758)
T ss_pred             HHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence            99999999999999999888888866543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.15  E-value=0.18  Score=45.57  Aligned_cols=126  Identities=7%  Similarity=0.039  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHH------HHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837           25 YFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTF------DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVK   98 (409)
Q Consensus        25 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~   98 (409)
                      +...|-++..++++.+|...+.+...........+      .+.+..+-..+.+.-...+.. ..+..|.++...+..|.
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~-l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLME-LRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH-HHHhcCCchHHHHHHHH
Confidence            34456667777777777766666655443332222      233344444555554444444 45556666666777777


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCC-------------HHHH--HHHHHHHHhcCChHHHHHHHHHHH
Q 043837           99 LLLAAKDYASAISETGYLLKEDENN-------------LEAL--LHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        99 ~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~--~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      ..++.+++.+|++.+...-..-...             ++.+  ...+.++..+|++.++...+++.+
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~  155 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII  155 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            7777777777777665544331110             1111  245666677777777776666654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.07  E-value=0.08  Score=46.22  Aligned_cols=153  Identities=16%  Similarity=0.077  Sum_probs=100.9

Q ss_pred             HhcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHHHHHHHhhHHhcC-CHHHHHHHHHHHHccC----CC---Cc-
Q 043837          135 YYLADHDVAQRHFQKGLRLD-PEHSELKKAYFALKNLLKKTKSAEDNVSKG-KLRVAVEDFKAALALD----PN---HT-  204 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~----~~---~~-  204 (409)
                      ..+|+.+.|..++.++-... ..++.   ....++.++...  +...++.+ +++.|+.+++++.++.    +.   .+ 
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~---~~~~La~~~yn~--G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~   78 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPD---MAEELARVCYNI--GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD   78 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcH---HHHHHHHHHHHH--HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence            56788889998888876654 33333   334444444333  45555558 9999999999998872    21   11 


Q ss_pred             --cchHHHHHHHHHHHHHcCChh---HHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC-CcHHH
Q 043837          205 --AHNVHLYLGLCKVLVKLGRGK---DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP-QDMNI  278 (409)
Q Consensus       205 --~~~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~  278 (409)
                        .....++..++.+|...+.++   +|....+.+-...|+.+..+...-.+..+.++.+++.+.+.+++..-+ .....
T Consensus        79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~  158 (278)
T PF08631_consen   79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF  158 (278)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence              124567788999999888765   344455555555678788886666666668999999999999988765 44444


Q ss_pred             HHHHHHHHHHHhhc
Q 043837          279 REALMRAEKALKMS  292 (409)
Q Consensus       279 ~~~l~~~~~~~~~~  292 (409)
                      ...+..+.......
T Consensus       159 ~~~l~~i~~l~~~~  172 (278)
T PF08631_consen  159 DSILHHIKQLAEKS  172 (278)
T ss_pred             HHHHHHHHHHHhhC
Confidence            44444444444433

It is also involved in sporulation [].

>PRK10941 hypothetical protein; Provisional

Probab=97.07  E-value=0.0095  Score=51.08  Aligned_cols=70  Identities=21%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                      ....++-.+|.+.++++.|+.+.+.++.+.|+++.-+.-+|.+|.+++.+..|...++..++..|+++..
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            3456677789999999999999999999999999999999999999999999999999999999999874

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.06  E-value=0.003  Score=53.55  Aligned_cols=79  Identities=18%  Similarity=0.171  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837           53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR  132 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  132 (409)
                      ..+......|....+.|+.++|..+|+. ++.+.|.++.++...|......++.-+|-.+|-+++.++|.+.+++.+...
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeH-AlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEH-ALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHH-HHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3455566677777788888888888887 788888888888888888888888888888888888888888887776654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.05  E-value=0.0035  Score=57.81  Aligned_cols=100  Identities=18%  Similarity=0.185  Sum_probs=86.8

Q ss_pred             CCCchHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043837           68 SGEYTKPLEYIDKVVLVFSPAC-SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRH  146 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  146 (409)
                      .|+...|+.++.. ++...|.. .-...++|.+.+..+-..+|-..+.+++.+....+-.++.+|..+..+.+.+.|++.
T Consensus       620 ~gn~~~a~~cl~~-a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  620 VGNSTFAIACLQR-ALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             cCCcHHHHHHHHH-HhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            5999999999988 66666654 345788999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHccCCCcHHHHHHHHHHH
Q 043837          147 FQKGLRLDPEHSELKKAYFALK  168 (409)
Q Consensus       147 ~~~al~~~p~~~~~~~~~~~l~  168 (409)
                      |+.|++++|++..+...+..++
T Consensus       699 ~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHhcCCCChhhHHHHHHHH
Confidence            9999999999998655444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.04  E-value=0.0095  Score=41.66  Aligned_cols=65  Identities=20%  Similarity=0.224  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHhh
Q 043837          227 ALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD--MNIREALMRAEKALKM  291 (409)
Q Consensus       227 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~  291 (409)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..++..+..+...+..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4567788888899999999999999999999999999999999888765  5666666666555543

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=97.00  E-value=0.0034  Score=61.65  Aligned_cols=16  Identities=44%  Similarity=0.979  Sum_probs=7.5

Q ss_pred             cCCCCCCCCCCCCCCC
Q 043837          387 FEGGFPGGFGGDGGFP  402 (409)
Q Consensus       387 ~~gg~~gg~~~~gg~~  402 (409)
                      |+|||||||||++|-|
T Consensus       624 ~~~~~~~~~~~~~~~~  639 (653)
T PTZ00009        624 MPGGMPGGMPGGAGPA  639 (653)
T ss_pred             CCCCCCCCCCCCCCCC
Confidence            4455555555444333

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.99  E-value=0.0049  Score=37.97  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=16.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          127 LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ++.+|..++++|+|++|..+.+.+|+.+|++..
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            444555555555555555555555555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.96  E-value=0.0011  Score=37.33  Aligned_cols=30  Identities=17%  Similarity=0.218  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          210 LYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                      ++.++|.+|..+|+|++|+.+|++++.+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            478999999999999999999999776543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.93  E-value=0.0047  Score=52.44  Aligned_cols=73  Identities=29%  Similarity=0.312  Sum_probs=62.7

Q ss_pred             HHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHH
Q 043837          176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAK  252 (409)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  252 (409)
                      .+......|+.++|...|+.|+.+.|+    ++.++..+|......++.-+|-.+|-+|+.++|.+.+++.++++..
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~----~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPT----NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCC----CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            344445559999999999999999999    6779999999998889999999999999999999999998887643

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.88  E-value=0.11  Score=40.59  Aligned_cols=123  Identities=16%  Similarity=0.091  Sum_probs=77.0

Q ss_pred             HHHHHHcCChHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC--c--HHHHHHHHHHHH
Q 043837           29 GSVLRQLCRVKARNSVAEKELSQ---LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA--C--SKAKLLKVKLLL  101 (409)
Q Consensus        29 a~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~--~--~~~~~~~a~~~~  101 (409)
                      +.-+.+.+..++|+..+...-..   .......+..+.....+|+-..|+..|++ +....|-  -  ..+.+.-+.++.
T Consensus        65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFde-ia~dt~~P~~~rd~ARlraa~lLv  143 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDE-IAADTSIPQIGRDLARLRAAYLLV  143 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHH-HhccCCCcchhhHHHHHHHHHHHh
Confidence            34445556666666655544331   23345556677777778888888888887 3333222  1  234455566777


Q ss_pred             HccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837          102 AAKDYASAISETGYLL-KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus       102 ~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      ..|.|++.....+.+- ..+|-...+.-.||..-++.|++..|.+.|.....
T Consensus       144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            7888887766655543 22344445666788888888888888888888666

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.87  E-value=0.017  Score=58.57  Aligned_cols=172  Identities=16%  Similarity=0.166  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHH------HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLE------YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--------  119 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~------~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------  119 (409)
                      .+...++.+......+.+.+|.+      ++........|.....+..++.++..++++++|+....++.-+        
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence            34455666666677777776766      7776667778999999999999999999999999998888654        


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH
Q 043837          120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK  194 (409)
Q Consensus       120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~  194 (409)
                      .|+....+.+++...+..++...|+..+.+++.+     .|+++.......++..++..+         ++++.|+.+++
T Consensus      1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v---------~e~d~al~~le 1081 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV---------EEADTALRYLE 1081 (1236)
T ss_pred             CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH---------HHHHHHHHHHH
Confidence            2445567889999999999999999999888764     355665555667777777766         88999999999


Q ss_pred             HHHccCCC----CccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837          195 AALALDPN----HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       195 ~al~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  234 (409)
                      .|+.++..    ........+..++.++..++++..|+...+..
T Consensus      1082 ~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1082 SALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred             HHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence            99885432    00113444445555555555554444444433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.86  E-value=0.027  Score=46.66  Aligned_cols=93  Identities=20%  Similarity=0.214  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHHcc---CCCCccchHHHHHHHHHHHHHcCChhH-------HHHHHHHHHhcCh------hcHHHHHH
Q 043837          184 GKLRVAVEDFKAALAL---DPNHTAHNVHLYLGLCKVLVKLGRGKD-------ALSSCTEALNINE------ELIEALVQ  247 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~la~~~~~~~~~~~-------A~~~~~~al~~~p------~~~~~~~~  247 (409)
                      ..+++|++.|.-|+-.   ....+...+.+++.+|++|...++.+.       |+..|.++++...      +...+.+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            5778888888777652   122222367889999999999999554       5555555554322      23678889


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          248 RGEAKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       248 la~~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      +|.+..++|++++|+.+|.+++.....+.
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999998654433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.84  E-value=0.099  Score=50.08  Aligned_cols=16  Identities=0%  Similarity=-0.153  Sum_probs=10.0

Q ss_pred             HHHHHHcCChHHHhHH
Q 043837           29 GSVLRQLCRVKARNSV   44 (409)
Q Consensus        29 a~~~~~~g~~~~A~~~   44 (409)
                      ..+|.+.|....|...
T Consensus       622 iqlyika~~p~~a~~~  637 (1636)
T KOG3616|consen  622 IQLYIKAGKPAKAARA  637 (1636)
T ss_pred             HHHHHHcCCchHHHHh
Confidence            3567777777666443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.83  E-value=0.027  Score=39.41  Aligned_cols=48  Identities=19%  Similarity=0.167  Sum_probs=26.5

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837          110 ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH  157 (409)
Q Consensus       110 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  157 (409)
                      +..+++.+..+|++..+.+.++..+...|++++|++.+-.++..+++.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            344555555666666666666666666666666666666666655443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.83  E-value=0.096  Score=37.96  Aligned_cols=102  Identities=17%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837           97 VKLLLAAKDYASAISETGYLLKEDENN------------LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY  164 (409)
Q Consensus        97 a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  164 (409)
                      |.-.+.-|-|++|...+.++++...+-            .-.+-.|+.++..+|+|++++..-.++|..           
T Consensus        16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y-----------   84 (144)
T PF12968_consen   16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY-----------   84 (144)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----------
Confidence            334456677888888888888764332            224567777888888888777766665532           


Q ss_pred             HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                                                  |++-=++..+.......+.++++.++..+|+.++|+..|+.+-+.
T Consensus        85 ----------------------------FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   85 ----------------------------FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             ----------------------------HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ----------------------------HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                                        111112222211113334556777777777777777777776543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.81  E-value=0.035  Score=42.97  Aligned_cols=97  Identities=15%  Similarity=0.103  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      .+......+..++.+++..++.. +..+.|..+.+-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|++.+
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~A-LrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDA-LRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHH-HHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            34444555666788888888876 78889999999999999999999999999999999999999998888999999999


Q ss_pred             CChHHHHHHHHHHHccCCC
Q 043837          138 ADHDVAQRHFQKGLRLDPE  156 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~  156 (409)
                      ++.+-= .+-..++...++
T Consensus        92 ~D~~Wr-~~A~evle~~~d  109 (160)
T PF09613_consen   92 GDPSWR-RYADEVLESGAD  109 (160)
T ss_pred             CChHHH-HHHHHHHhcCCC
Confidence            886532 223344554443

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.32  Score=42.36  Aligned_cols=270  Identities=19%  Similarity=0.204  Sum_probs=158.0

Q ss_pred             ChHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCChHHHhHHHHHHHH---HHHHHH--HHHHHHHHHH-
Q 043837            3 HYSEALDDLNTAIEA--DPTL--------SEAYFHRGSVLRQLCRVKARNSVAEKELS---QLLQAQ--STFDSALKLY-   66 (409)
Q Consensus         3 ~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~--~~~~~a~~~~-   66 (409)
                      ++++++..|.+++..  .|.+        ......++..|.+.|+..+-.......-.   ....+.  ....--...+ 
T Consensus        19 ~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~   98 (411)
T KOG1463|consen   19 QVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFL   98 (411)
T ss_pred             hhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence            568899999998874  2221        25678899999999998764332222111   111110  0011111111 


Q ss_pred             -hCCCchHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHH
Q 043837           67 -DSGEYTKPLEYIDKVVLVFSPAC------SKAKLLKVKLLLAAKDYASAISETGYLLKE----D--ENNLEALLHRGRA  133 (409)
Q Consensus        67 -~~~~~~~A~~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~  133 (409)
                       .....+.-+.++.. +++.....      ...-..+...|...++|.+|+......++-    +  +.-.+++..-+.+
T Consensus        99 ~~~~~~~~~i~l~~~-cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~  177 (411)
T KOG1463|consen   99 KIDDGTGDQIELCTE-CIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKA  177 (411)
T ss_pred             cCCCCcchHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHH
Confidence             12344455555554 33322211      123345788999999999999988877652    2  2234577788899


Q ss_pred             HHhcCChHHHHHHHHHHHccC-----CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--C-cc
Q 043837          134 YYYLADHDVAQRHFQKGLRLD-----PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--H-TA  205 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~-~~  205 (409)
                      |+.+.+..+|...+..|-...     |....   +-       ..+..+-......+|..|..+|-++++-...  + ..
T Consensus       178 y~~l~Nl~KakasLTsART~AnaiYcpPqlQ---a~-------lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~  247 (411)
T KOG1463|consen  178 YHALRNLPKAKASLTSARTTANAIYCPPQLQ---AT-------LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK  247 (411)
T ss_pred             HHHHhcchhHHHHHHHHHHhhcccccCHHHH---HH-------HHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence            999999999998888775532     21111   11       1111122222238999999999999984332  1 11


Q ss_pred             -chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          206 -HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL--TEDWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       206 -~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                       ....-|..++.+....-+--.++-.-+.+++....+.++....|.++.+  +.+|+.|+..|+.-+..+|   -++..+
T Consensus       248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl  324 (411)
T KOG1463|consen  248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHL  324 (411)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHH
Confidence             0122233444444433333344555566777788889999999998865  5789999999988777655   344444


Q ss_pred             HHHH
Q 043837          283 MRAE  286 (409)
Q Consensus       283 ~~~~  286 (409)
                      ..++
T Consensus       325 ~~Ly  328 (411)
T KOG1463|consen  325 QSLY  328 (411)
T ss_pred             HHHH
Confidence            4443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.76  E-value=0.057  Score=49.31  Aligned_cols=98  Identities=17%  Similarity=0.209  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 043837           73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLAD-HDVAQRHFQKGL  151 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al  151 (409)
                      .-+..|.. +....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++|
T Consensus        89 rIv~lyr~-at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   89 RIVFLYRR-ATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHH-HHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            33455655 6777788999999998888888889999999999999999999999988888777776 999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHHHH
Q 043837          152 RLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~  171 (409)
                      ..+|+++.++..++.+-..+
T Consensus       168 R~npdsp~Lw~eyfrmEL~~  187 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFRMELMY  187 (568)
T ss_pred             hcCCCChHHHHHHHHHHHHH
Confidence            99999999766666654444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.76  E-value=0.072  Score=41.30  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      ....+..+..+-...++.+++...+...--+.|+.++.-..-|.+++..|+|.+|+..++.+.+..|..+-....+..|.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            44566677777778888888888888888888999998888999999999999999999988888888888888888887


Q ss_pred             HHHhhc
Q 043837          287 KALKMS  292 (409)
Q Consensus       287 ~~~~~~  292 (409)
                      ..++..
T Consensus        89 ~~~~D~   94 (160)
T PF09613_consen   89 YALGDP   94 (160)
T ss_pred             HHcCCh
Confidence            766543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.75  E-value=0.028  Score=51.15  Aligned_cols=95  Identities=13%  Similarity=0.040  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccC-HHHHHHHHH
Q 043837          188 VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTED-WEGAVEDLK  266 (409)
Q Consensus       188 ~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~  266 (409)
                      .-+..|+.++...+.    +..+|.+......+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...+.
T Consensus        89 rIv~lyr~at~rf~~----D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNG----DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHHHhcCC----CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            456678888888887    566888887777777779999999999999999999999999998888776 999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHH
Q 043837          267 SAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       267 ~al~~~p~~~~~~~~l~~~~  286 (409)
                      ++++.+|+++.++...-+++
T Consensus       165 rgLR~npdsp~Lw~eyfrmE  184 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKEYFRME  184 (568)
T ss_pred             HHhhcCCCChHHHHHHHHHH
Confidence            99999999999887655544

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.16  Score=47.41  Aligned_cols=139  Identities=24%  Similarity=0.168  Sum_probs=94.5

Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 043837          104 KDYASAISETGYLLKEDENNLEALLH--RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV  181 (409)
Q Consensus       104 ~~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  181 (409)
                      +...-++..+...+.++|.++..+..  ++..+...+....+...+..++..+|++..   .+.+++......       
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~L~~ale~~-------  114 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCP---AVQNLAAALELD-------  114 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccch---HHHHHHHHHHHh-------
Confidence            33444667777777778888776543  477777778888888888888888888887   777777766654       


Q ss_pred             hcCCHHHHHHHHH-HHHccCCCCccchHHHHHHH------HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837          182 SKGKLRVAVEDFK-AALALDPNHTAHNVHLYLGL------CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL  254 (409)
Q Consensus       182 ~~~~~~~A~~~~~-~al~~~~~~~~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  254 (409)
                        +....++..+. .+....|+    +......+      +.....+++..++.....++..+.|.++.+...+.....+
T Consensus       115 --~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~  188 (620)
T COG3914         115 --GLQFLALADISEIAEWLSPD----NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE  188 (620)
T ss_pred             --hhHHHHHHHHHHHHHhcCcc----hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence              55555554444 47777887    44444433      7777778888888888888888888876666555555433


Q ss_pred             ccCH
Q 043837          255 TEDW  258 (409)
Q Consensus       255 ~~~~  258 (409)
                      ...|
T Consensus       189 ~cs~  192 (620)
T COG3914         189 QCSW  192 (620)
T ss_pred             hccc
Confidence            3333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.64  E-value=0.59  Score=44.81  Aligned_cols=128  Identities=11%  Similarity=0.065  Sum_probs=69.9

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHH-----H---HHHHH-HHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837           13 TAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKE-----L---SQLLQ-AQSTFDSALKLYDSGEYTKPLEYIDKVVL   83 (409)
Q Consensus        13 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-----l---~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   83 (409)
                      +-++.+| .+..|..+|...+..-.++-|...+.+.     +   ..... .....++|...---|++++|.+.|-. + 
T Consensus       684 qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld-~-  760 (1189)
T KOG2041|consen  684 QFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD-A-  760 (1189)
T ss_pred             HHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc-c-
Confidence            3455566 4678888888777766666664444331     1   11111 01112333333334778888777744 1 


Q ss_pred             hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837           84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus        84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                        +     -.-.....+..+|+|-....+++..-.-+.+  -..++.++|..+..+..|++|.++|..+
T Consensus       761 --d-----rrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  761 --D-----RRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             --c-----hhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              1     1122234556667776666655543221111  2346777777777777777777777664

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.62  E-value=0.042  Score=44.15  Aligned_cols=26  Identities=15%  Similarity=0.253  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837          127 LLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      +..+|..|...|+.+.|++.|.++..
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~   64 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARD   64 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            33444444444444444444444433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.60  E-value=0.66  Score=43.68  Aligned_cols=179  Identities=13%  Similarity=0.029  Sum_probs=130.9

Q ss_pred             HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcCChHH
Q 043837           64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-DENNLEALLHRGRAYYYLADHDV  142 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~  142 (409)
                      .-...|+++.....|++ ++--.......|...+.-....|+..-|-..+..+.++ .|..+..+..-+.+-...|++..
T Consensus       306 f~i~~g~~~~~~~l~er-cli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~  384 (577)
T KOG1258|consen  306 FEITLGDFSRVFILFER-CLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD  384 (577)
T ss_pred             hhhhcccHHHHHHHHHH-HHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence            33566999999999998 66556678899999999999999999999988888886 46677788888889999999999


Q ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH---HHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837          143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE---DFKAALALDPNHTAHNVHLYLGLCKVLV  219 (409)
Q Consensus       143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~---~~~~al~~~~~~~~~~~~~~~~la~~~~  219 (409)
                      |...++++..-.|....   +-..........         ++.+.+..   .+..... ...+.......+...+....
T Consensus       385 A~~~lq~i~~e~pg~v~---~~l~~~~~e~r~---------~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~  451 (577)
T KOG1258|consen  385 AKVILQRIESEYPGLVE---VVLRKINWERRK---------GNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRY  451 (577)
T ss_pred             HHHHHHHHHhhCCchhh---hHHHHHhHHHHh---------cchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHH
Confidence            99999999987787766   322333333333         77777763   3333222 22222224445556665543


Q ss_pred             -HcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837          220 -KLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE  256 (409)
Q Consensus       220 -~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  256 (409)
                       -.++.+.|...+.+++...|.+...+..+-.......
T Consensus       452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence             4567899999999999999999888877766655444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.58  E-value=0.08  Score=43.94  Aligned_cols=113  Identities=14%  Similarity=0.088  Sum_probs=72.2

Q ss_pred             hcCChHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHH
Q 043837          136 YLADHDVAQRHFQKGLR----LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVH  209 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~  209 (409)
                      ....+++|++.|.-|+-    ...++......+..++.++...+  +...+..-+..|+..|.+++.....  .......
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~--~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLG--DEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            34456777777776664    23344444556777777777661  1222223356677777777765432  2223577


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH-HHHHHHHH
Q 043837          210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELI-EALVQRGE  250 (409)
Q Consensus       210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~  250 (409)
                      +.+.+|.+..+.|++++|+.+|.+++.....+. ..+..+|+
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            899999999999999999999999998643322 34444443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.55  E-value=0.0042  Score=33.46  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      ++..+|.++...+++++|+..+++++++.|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455556666666666666666666555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.55  E-value=0.93  Score=44.82  Aligned_cols=233  Identities=15%  Similarity=0.035  Sum_probs=143.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc-
Q 043837           21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQL----------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC-   89 (409)
Q Consensus        21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~-   89 (409)
                      ++...+..+.......++.+|.....+.....          ..+...--+|......++.+.|+.+.+. ++..-|.. 
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~-al~~L~~~~  492 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL-ALVQLPEAA  492 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhccccc
Confidence            34555666777888899999877766554422          2233344577788899999999999998 55544432 


Q ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----CC--HHHHHHHHHHHHhcCChH--HHHHHHHHHH----cc
Q 043837           90 ----SKAKLLKVKLLLAAKDYASAISETGYLLKEDE----NN--LEALLHRGRAYYYLADHD--VAQRHFQKGL----RL  153 (409)
Q Consensus        90 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~--~~~~~~l~~~~~~~~~~~--~A~~~~~~al----~~  153 (409)
                          ..++...+.+..-.|++++|......+.+...    ..  ..+.+..+.++..+|+..  +....+...-    ..
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q  572 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ  572 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence                45677788999999999999999999887632    22  234456788889999433  3333332221    12


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc----CCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837          154 DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL----DPNHTAHNVHLYLGLCKVLVKLGRGKDALS  229 (409)
Q Consensus       154 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  229 (409)
                      .|-+.-....+..+..++.            +++.+.......+++    .|..-. ..-.++.++.+....|++++|..
T Consensus       573 ~~~~~f~~~~r~~ll~~~~------------r~~~~~~ear~~~~~~~~~~~~~~~-~~~~~~~LA~l~~~~Gdl~~A~~  639 (894)
T COG2909         573 KPRHEFLVRIRAQLLRAWL------------RLDLAEAEARLGIEVGSVYTPQPLL-SRLALSMLAELEFLRGDLDKALA  639 (894)
T ss_pred             cccchhHHHHHHHHHHHHH------------HHhhhhHHhhhcchhhhhcccchhH-HHHHHHHHHHHHHhcCCHHHHHH
Confidence            2333222222333333322            234444444444332    232111 22333589999999999999999


Q ss_pred             HHHHHHhcChhc-------HHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837          230 SCTEALNINEEL-------IEALVQRGEAKLLTEDWEGAVEDLKS  267 (409)
Q Consensus       230 ~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~  267 (409)
                      .+.+...+-.+.       ..++.........+|+...|.....+
T Consensus       640 ~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         640 QLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            998887653221       12222233345567899999888877

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=1  Score=45.24  Aligned_cols=218  Identities=12%  Similarity=0.047  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh--------------
Q 043837           20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF--------------   85 (409)
Q Consensus        20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------   85 (409)
                      +.+..|..+|.+.++.+...+|+..+.++-.    ...+.+-....-+.|.|++-+.++.- +.+.              
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyikadD----ps~y~eVi~~a~~~~~~edLv~yL~M-aRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKADD----PSNYLEVIDVASRTGKYEDLVKYLLM-ARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhcCC----cHHHHHHHHHHHhcCcHHHHHHHHHH-HHHhhcCccchHHHHHHH
Confidence            6788999999999999999999887765421    11222222223334555555555432 1111              


Q ss_pred             --------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           86 --------------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        86 --------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                                    .|+.+. .-..|.-++..+.|+.|.-+|.        +..-|-.++..+..+|+|..|...-++|-
T Consensus      1177 Akt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred             HHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                          122221 1223444444455555544443        23356788889999999999998888864


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHH---------------------HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHH
Q 043837          152 RLDPEHSELKKAYFALKNLLKK---------------------TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHL  210 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  210 (409)
                      ..     .   .|..+......                     -+..+.+-++|-+++-+..++.++-+...    ....
T Consensus      1248 s~-----k---tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA----HMgm 1315 (1666)
T KOG0985|consen 1248 ST-----K---TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA----HMGM 1315 (1666)
T ss_pred             ch-----h---HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH----HHHH
Confidence            32     1   22222222111                     11233344569999999999999988877    5567


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhc-C-h------hcHHHHHHHHHHHHhccCHHHHHHH
Q 043837          211 YLGLCKVLVKLGRGKDALSSCTEALNI-N-E------ELIEALVQRGEAKLLTEDWEGAVED  264 (409)
Q Consensus       211 ~~~la~~~~~~~~~~~A~~~~~~al~~-~-p------~~~~~~~~la~~~~~~~~~~~A~~~  264 (409)
                      +..+|.+|.+- ++++-.++++--... + |      +....|..+..+|.+-..|+.|.-.
T Consensus      1316 fTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1316 FTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred             HHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            77888777654 345555555433321 1 1      3456677788888888888877543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.26  Score=46.17  Aligned_cols=149  Identities=13%  Similarity=0.013  Sum_probs=105.5

Q ss_pred             HHhCCCchH-HHHHHHHHHHhhCCCcHHHHHH--HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH
Q 043837           65 LYDSGEYTK-PLEYIDKVVLVFSPACSKAKLL--KVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD  141 (409)
Q Consensus        65 ~~~~~~~~~-A~~~~~~~~~~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  141 (409)
                      .+..+.... ++..+.. -+..+|.++.....  +...+...++...+.-....++..+|++..++.+++.+....+...
T Consensus        40 ~l~~~~~~~~~~~a~~~-~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~  118 (620)
T COG3914          40 WLNAEGLQALAIYALLL-GIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF  118 (620)
T ss_pred             HhcccCchhHHHHHHHc-cCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH
Confidence            344444444 4444433 45567777766443  4777788899989999999999999999999999999988888777


Q ss_pred             HHHHHHHH-HHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837          142 VAQRHFQK-GLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK  220 (409)
Q Consensus       142 ~A~~~~~~-al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~  220 (409)
                      .++..+.. +....|++..   ....+-.++. +  +...-..++..++...+.++..+.|.    ...+...+.....+
T Consensus       119 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~-~--~~~~~~l~~~~~~~~~l~~~~d~~p~----~~~~~~~~~~~r~~  188 (620)
T COG3914         119 LALADISEIAEWLSPDNAE---FLGHLIRFYQ-L--GRYLKLLGRTAEAELALERAVDLLPK----YPRVLGALMTARQE  188 (620)
T ss_pred             HHHHHHHHHHHhcCcchHH---HHhhHHHHHH-H--HHHHHHhccHHHHHHHHHHHHHhhhh----hhhhHhHHHHHHHH
Confidence            76666665 8888999887   5555555554 3  44445568889999999999999999    44444444444333


Q ss_pred             cCCh
Q 043837          221 LGRG  224 (409)
Q Consensus       221 ~~~~  224 (409)
                      .-.+
T Consensus       189 ~cs~  192 (620)
T COG3914         189 QCSW  192 (620)
T ss_pred             hccc
Confidence            3333

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.49  E-value=0.013  Score=53.62  Aligned_cols=106  Identities=10%  Similarity=-0.041  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHHHHH
Q 043837           53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA---KDYASAISETGYLLKEDENNLEALLH  129 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~  129 (409)
                      +..+..+..+...+..+.+..|+..|.+ ++...|.....+.++|.++++.   |+.-.|+..+..+++++|....+|+.
T Consensus       372 e~ie~~~~egnd~ly~~~~~~~i~~~s~-a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  372 ENIEKFKTEGNDGLYESIVSGAISHYSR-AIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHH-HhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence            3444455566666667778889999988 8888899999999999998875   46778999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      |+.++..++++.+|+.+...+....|.+..
T Consensus       451 la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            999999999999999999988888886654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.48  E-value=0.73  Score=42.86  Aligned_cols=175  Identities=13%  Similarity=0.025  Sum_probs=112.3

Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcC---ChHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKD--------------YASAISETGYLLKEDEN-NLEALLHRGRAYYYLA---DHDVA  143 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~---~~~~A  143 (409)
                      ++..-+.++++|+..+..+...++              .+++..+|++++...-. +...++.++..-...-   .++..
T Consensus       271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~  350 (656)
T KOG1914|consen  271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV  350 (656)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence            444446667777776666665555              66777778777764322 2333344443322222   25666


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH-HHHHcC
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK-VLVKLG  222 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~-~~~~~~  222 (409)
                      ...+++++.+...+...  +|..+-......         .-.+.|...|.++-+..-.    ...++..-|. -|...+
T Consensus       351 ~~~~~~ll~~~~~~~tL--v~~~~mn~irR~---------eGlkaaR~iF~kaR~~~r~----~hhVfVa~A~mEy~csk  415 (656)
T KOG1914|consen  351 HEIYNKLLKIEDIDLTL--VYCQYMNFIRRA---------EGLKAARKIFKKAREDKRT----RHHVFVAAALMEYYCSK  415 (656)
T ss_pred             HHHHHHHHhhhccCCce--ehhHHHHHHHHh---------hhHHHHHHHHHHHhhccCC----cchhhHHHHHHHHHhcC
Confidence            66777776654333331  333333333333         5567788888887765443    2223333332 356678


Q ss_pred             ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          223 RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       223 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      +.+-|...|+-.++..++.+.........+..+++-..|...|++++..
T Consensus       416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            9999999999999999999988888888899999999999999999887

>smart00028 TPR Tetratricopeptide repeats

Probab=96.47  E-value=0.0056  Score=32.92  Aligned_cols=31  Identities=26%  Similarity=0.134  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDEN  122 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  122 (409)
                      ++..+|.++...+++++|+..++++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3455555555556666666655555555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.0085  Score=59.21  Aligned_cols=55  Identities=38%  Similarity=0.604  Sum_probs=45.2

Q ss_pred             hhhhhhhcccccC----CHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChh
Q 043837          295 KDWYKILGVSKTA----SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD  353 (409)
Q Consensus       295 ~~~~~~l~~~~~~----~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~  353 (409)
                      .+.+++|.++...    ....|++.|+++|.++||||+++-+    ++|..+++|||.|....
T Consensus      1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGR----emFe~VnKAYE~L~~~t 1339 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGR----EMFERVNKAYELLSSET 1339 (2235)
T ss_pred             HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHH----HHHHHHHHHHHHHHHHH
Confidence            4678998876432    4578999999999999999997765    48889999999998443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.41  E-value=0.37  Score=48.99  Aligned_cols=129  Identities=22%  Similarity=0.157  Sum_probs=86.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPTLS---EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++|+..|++.-..-|.-.   ++.+..|..++.+                          |...-....+++|+..|+
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~  543 (932)
T PRK13184        490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK--------------------------ASEQGDPRDFTQALSEFS  543 (932)
T ss_pred             HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH--------------------------HHhcCChHHHHHHHHHHH
Confidence            47788888888877777644   4555666554322                          222211235677777776


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHccC
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL-----ADHDVAQRHFQKGLRLD  154 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~  154 (409)
                      +  +...|..+--|...|.+|.+++++++-+++|.-+++..|..|..-...-.+-+++     .+...|....--++...
T Consensus       544 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (932)
T PRK13184        544 Y--LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIA  621 (932)
T ss_pred             H--hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5  6667888889999999999999999999999999999998877433332222222     12345566666677777


Q ss_pred             CCcHH
Q 043837          155 PEHSE  159 (409)
Q Consensus       155 p~~~~  159 (409)
                      |....
T Consensus       622 ~~~~~  626 (932)
T PRK13184        622 PEKIS  626 (932)
T ss_pred             ccccc
Confidence            76554

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.0043  Score=53.77  Aligned_cols=85  Identities=29%  Similarity=0.329  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      ....+.+++.+-++.+.+..|+.....+++.+++...+++.++..+..+.++++|++.++.+....|++..+...+....
T Consensus       274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR  353 (372)
T ss_pred             ccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence            34567779999999999999999999999999999999999999999999999999999999999999999888887776


Q ss_pred             HHHhh
Q 043837          287 KALKM  291 (409)
Q Consensus       287 ~~~~~  291 (409)
                      ...+.
T Consensus       354 ~~~~~  358 (372)
T KOG0546|consen  354 QKKKQ  358 (372)
T ss_pred             hHHHH
Confidence            65543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.40  E-value=0.0062  Score=49.51  Aligned_cols=57  Identities=18%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             HHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      .+.++.+.|.+.|.+++++.|++...|+++|....+.|+++.|...|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344555666666666666666666666666666666666666666666666666654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.34  E-value=0.13  Score=46.90  Aligned_cols=126  Identities=16%  Similarity=0.044  Sum_probs=97.7

Q ss_pred             HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837           64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  143 (409)
                      ..+..|+.-.|-..+.. ++...|..+......+.+...+|+|+.|...+..+-..-..-..+...+-.....++++++|
T Consensus       298 k~~~~gd~~aas~~~~~-~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        298 KQLADGDIIAASQQLFA-ALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHhhccCHHHHHHHHHH-HHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            34556787777777766 78888999999999999999999999999888777666555556677777888899999999


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      ...-...+.-.-++++   +...-+..-..+         +-++++.-++++.+.++|.
T Consensus       377 ~s~a~~~l~~eie~~e---i~~iaa~sa~~l---------~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        377 LSTAEMMLSNEIEDEE---VLTVAAGSADAL---------QLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHHhccccCChh---heeeecccHHHH---------hHHHHHHHHHHHHhccCCh
Confidence            9998888876666666   332223333344         8889999999999999885

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.26  E-value=0.59  Score=39.45  Aligned_cols=198  Identities=14%  Similarity=0.052  Sum_probs=105.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYI   78 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   78 (409)
                      ..++|+..|.+++++.|...    .++-....+++.++++++-...+.+.+.-..++...          +-.++++...
T Consensus        42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr----------NySEKsIN~I  111 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR----------NYSEKSINSI  111 (440)
T ss_pred             CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc----------cccHHHHHHH
Confidence            46899999999999988754    467778889999999988777766665533322110          0111111111


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DENNLEAL----LHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      -. .+.                 ...+.+--.+.|+..++.  +..+...|    ..+|.+|+..++|.+-.+.+++.-.
T Consensus       112 lD-yiS-----------------tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~  173 (440)
T KOG1464|consen  112 LD-YIS-----------------TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ  173 (440)
T ss_pred             HH-HHh-----------------hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence            11 000                 111111112222222211  11222233    4688888888888776666655433


Q ss_pred             cC---CCcH------HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--ccchHHHHHHHHHHHHHc
Q 043837          153 LD---PEHS------ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--TAHNVHLYLGLCKVLVKL  221 (409)
Q Consensus       153 ~~---p~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~la~~~~~~  221 (409)
                      ..   ....      ....+|..-...|...         ++-.+-...|++++.+...-  |.....+..-=|..++..
T Consensus       174 SCq~edGedD~kKGtQLLEiYAlEIQmYT~q---------KnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlre  244 (440)
T KOG1464|consen  174 SCQTEDGEDDQKKGTQLLEIYALEIQMYTEQ---------KNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLRE  244 (440)
T ss_pred             HhccccCchhhhccchhhhhHhhHhhhhhhh---------cccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccccc
Confidence            21   1111      1112222222333333         66666677888888765432  211122222335567788


Q ss_pred             CChhHHHHHHHHHHhc
Q 043837          222 GRGKDALSSCTEALNI  237 (409)
Q Consensus       222 ~~~~~A~~~~~~al~~  237 (409)
                      |+|++|-..|-+|.+.
T Consensus       245 g~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  245 GEFEKAHTDFFEAFKN  260 (440)
T ss_pred             chHHHHHhHHHHHHhc
Confidence            8999998888888765

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.74  Score=43.15  Aligned_cols=159  Identities=18%  Similarity=0.214  Sum_probs=101.2

Q ss_pred             ccCHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc------------------
Q 043837          103 AKDYASAISETGYLLKE------------DENNLEALLHRGRAYYYLADHDVAQRHFQKGLR------------------  152 (409)
Q Consensus       103 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------  152 (409)
                      ...|++|...|.-++..            .|-..+.+..++.++..+|+.+-|...+.++|-                  
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34578888888877654            455677899999999999999988888877763                  


Q ss_pred             ---cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC-CccchHHHHHHHHHHHHHcCChhHHH
Q 043837          153 ---LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN-HTAHNVHLYLGLCKVLVKLGRGKDAL  228 (409)
Q Consensus       153 ---~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~  228 (409)
                         ..|.|..   .|..+-..      ...+-++|-+..|.++.+-.+.++|. +|.   -+.+.+=...++..+|+=-+
T Consensus       331 L~y~~~eNR~---FyL~l~r~------m~~l~~RGC~rTA~E~cKlllsLdp~eDPl---~~l~~ID~~ALrareYqwiI  398 (665)
T KOG2422|consen  331 LPYIYPENRQ---FYLALFRY------MQSLAQRGCWRTALEWCKLLLSLDPSEDPL---GILYLIDIYALRAREYQWII  398 (665)
T ss_pred             CcccchhhHH---HHHHHHHH------HHHHHhcCChHHHHHHHHHHhhcCCcCCch---hHHHHHHHHHHHHHhHHHHH
Confidence               1233333   22222111      12223459999999999999999998 542   12222223334555666666


Q ss_pred             HHHHHHH-----hcChhcHHHHHHHHHHHHhccC---HHHHHHHHHHHHhhCCC
Q 043837          229 SSCTEAL-----NINEELIEALVQRGEAKLLTED---WEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       229 ~~~~~al-----~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~  274 (409)
                      ..++..-     ..-|+.+ .-..+|..|.....   -..|...+.+|+...|.
T Consensus       399 ~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  399 ELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             HHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            6665542     2234322 22345555555554   56788999999999884

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.16  E-value=0.12  Score=41.49  Aligned_cols=107  Identities=18%  Similarity=0.162  Sum_probs=81.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      ...++...+..++..+...         |+.++|++.|.++.+....... ....+.++..+.+..+++..+..++.++-
T Consensus        31 ~kesir~~~~~l~~~~~~~---------Gd~~~A~k~y~~~~~~~~~~~~-~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   31 GKESIRMALEDLADHYCKI---------GDLEEALKAYSRARDYCTSPGH-KIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             chHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhcCCHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3344556788888888888         9999999999998886654332 67788899999999999999999999887


Q ss_pred             hcCh--hc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          236 NINE--EL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       236 ~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      .+-.  .+    .......|..++..++|..|...|-.+..-.
T Consensus       101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            6522  12    2344556778888999999999887665443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.14  E-value=0.11  Score=39.56  Aligned_cols=79  Identities=15%  Similarity=0.102  Sum_probs=64.8

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH
Q 043837           62 ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD  141 (409)
Q Consensus        62 a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  141 (409)
                      ....+...+.+++..+++. +..+.|+.+.+-..-+.+++..|+|.+|+..++.+.+..+..+..--.++.|+..+++.+
T Consensus        17 ~~~aL~~~d~~D~e~lLdA-LrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        17 LMYALRSADPYDAQAMLDA-LRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             HHHHHhcCCHHHHHHHHHH-HHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            3334447788888888876 777889999999999999999999999999999998888887877778888888888754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.11  E-value=0.18  Score=37.64  Aligned_cols=72  Identities=18%  Similarity=0.187  Sum_probs=58.3

Q ss_pred             CcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           88 ACSKAKLLKVKLLLAAK---DYASAISETGYLLK-EDEN-NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      -.....+++|.++....   +..+.+.+++..++ -+|. .-+..+.|+..++++++|+.++.+.+.+++..|++.+
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence            34567788888887655   45678889999986 4454 3456789999999999999999999999999999987

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.06  E-value=0.011  Score=48.05  Aligned_cols=61  Identities=20%  Similarity=0.197  Sum_probs=54.2

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      .....++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4456788899999999999999999999999999999999999999999999999998754

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.45  Score=45.08  Aligned_cols=98  Identities=15%  Similarity=0.076  Sum_probs=83.4

Q ss_pred             HHhhHHhcCCHHHHHHHHHHHHccCCCCcc--chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837          176 SAEDNVSKGKLRVAVEDFKAALALDPNHTA--HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL  253 (409)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  253 (409)
                      .|...++..+|..+++.|...+..-|.+..  ..+....+++.||+.+.+.+.|++++++|-+.+|.++-.....-.+..
T Consensus       360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~  439 (872)
T KOG4814|consen  360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL  439 (872)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            455666779999999999999997776432  135677899999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhhCC
Q 043837          254 LTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       254 ~~~~~~~A~~~~~~al~~~p  273 (409)
                      ..++-++|+....+......
T Consensus       440 ~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  440 AEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             HhcchHHHHHHHHHHHhhhc
Confidence            99999999999988776543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.04  E-value=0.068  Score=47.69  Aligned_cols=96  Identities=18%  Similarity=0.203  Sum_probs=73.9

Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccCCC--------Ccc------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALDPN--------HTA------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~--------~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                      ..+...+.+++|..|.--|..+|++..+        .+.      ....+...+..||+.+++.+.|+....+.|.++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            4455555567777777777777665322        111      12345567899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      +...+.+.|.|+..+.+|.+|...+--+.-
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887765543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.04  E-value=0.96  Score=39.82  Aligned_cols=149  Identities=18%  Similarity=0.120  Sum_probs=102.4

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcC-----
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA----AKDYASAISETGYLLKEDENN-LEALLHRGRAYYYLA-----  138 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~-----  138 (409)
                      .+..+|+..|..   ......+.+.+.+|.+|..    ..+..+|..+|.++.+..-.. ..+.+.++.+|..-.     
T Consensus        91 ~~~~~A~~~~~~---~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~  167 (292)
T COG0790          91 RDKTKAADWYRC---AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV  167 (292)
T ss_pred             ccHHHHHHHHHH---HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence            457778888864   3345677888999999987    559999999999999875433 344788888887752     


Q ss_pred             --ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH
Q 043837          139 --DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK  216 (409)
Q Consensus       139 --~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~  216 (409)
                        +...|+..|.++-...  +..   +...++.++..- .+    -..++.+|+.+|.++-+...      ....+.++ 
T Consensus       168 ~~~~~~A~~~~~~aa~~~--~~~---a~~~lg~~y~~G-~G----v~~d~~~A~~wy~~Aa~~g~------~~a~~~~~-  230 (292)
T COG0790         168 AYDDKKALYLYRKAAELG--NPD---AQLLLGRMYEKG-LG----VPRDLKKAFRWYKKAAEQGD------GAACYNLG-  230 (292)
T ss_pred             cHHHHhHHHHHHHHHHhc--CHH---HHHHHHHHHHcC-CC----CCcCHHHHHHHHHHHHHCCC------HHHHHHHH-
Confidence              2337888888887765  333   667777665431 11    12689999999999988765      23667777 


Q ss_pred             HHHHcC---------------ChhHHHHHHHHHHhc
Q 043837          217 VLVKLG---------------RGKDALSSCTEALNI  237 (409)
Q Consensus       217 ~~~~~~---------------~~~~A~~~~~~al~~  237 (409)
                      ++...|               +...|..++..+...
T Consensus       231 ~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         231 LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence            666555               445555555555444

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=1.2  Score=40.11  Aligned_cols=178  Identities=13%  Similarity=0.081  Sum_probs=122.2

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHhhCCCCHHH
Q 043837           59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA------------KDYASAISETGYLLKEDENNLEA  126 (409)
Q Consensus        59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~  126 (409)
                      +......-..+.|+.-.-.+...++..+|....+|..+=.++...            .-.++-+.+...+++.+|++..+
T Consensus        32 ~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~a  111 (421)
T KOG0529|consen   32 FSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGA  111 (421)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHH
Confidence            333344445566655444444448888998887777665544322            23566778889999999999999


Q ss_pred             HHHHHHHHHhcCC--hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837          127 LLHRGRAYYYLAD--HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT  204 (409)
Q Consensus       127 ~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  204 (409)
                      |+.+..++.+...  +..-+..++++++.||.+..   .|.....+.......     .....+-+.+.++++.-++.  
T Consensus       112 W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh---~W~YRRfV~~~~~~~-----~~~~~~El~ftt~~I~~nfS--  181 (421)
T KOG0529|consen  112 WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH---AWHYRRFVVEQAERS-----RNLEKEELEFTTKLINDNFS--  181 (421)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc---chHHHHHHHHHHhcc-----cccchhHHHHHHHHHhccch--
Confidence            9999999987764  68889999999999999987   554444444333111     13456678888999988888  


Q ss_pred             cchHHHHHHHHHHHHH------cCC------hhHHHHHHHHHHhcChhcHHHHHHH
Q 043837          205 AHNVHLYLGLCKVLVK------LGR------GKDALSSCTEALNINEELIEALVQR  248 (409)
Q Consensus       205 ~~~~~~~~~la~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~l  248 (409)
                        +..+|.++..++..      .|+      ...-+..-..|+-.+|++..+|+..
T Consensus       182 --NYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  182 --NYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             --hhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence              77889888877662      231      1233445556666789988887663

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.93  E-value=1.3  Score=40.43  Aligned_cols=151  Identities=17%  Similarity=0.166  Sum_probs=93.0

Q ss_pred             HHHHHHHhcCC-hHHHHHHHHHHHccCCCcHHHHHHHHH-HHHHHHHHHHHhhHHhcCCHHHHHHH--HHHHHccCCCCc
Q 043837          129 HRGRAYYYLAD-HDVAQRHFQKGLRLDPEHSELKKAYFA-LKNLLKKTKSAEDNVSKGKLRVAVED--FKAALALDPNHT  204 (409)
Q Consensus       129 ~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~A~~~--~~~al~~~~~~~  204 (409)
                      .-|.-++..|. -++|+..++.++...|.+..+...... +...|...      +.......-+..  +-.-+.+.|-..
T Consensus       384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qa------Ls~~~~~rLlkLe~fi~e~gl~~i~i  457 (549)
T PF07079_consen  384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQA------LSMHAIPRLLKLEDFITEVGLTPITI  457 (549)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHhcCCCcccc
Confidence            34455566666 788899999998888877763322211 12222111      111111111111  111122344322


Q ss_pred             cchHHHHHHH--HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC----cHHH
Q 043837          205 AHNVHLYLGL--CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ----DMNI  278 (409)
Q Consensus       205 ~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~  278 (409)
                      . +.+.-.-+  |..++..|+|.++.-+..-..++.| ++.++..+|.|+....+|++|..++..   +.|+    +..+
T Consensus       458 ~-e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskv  532 (549)
T PF07079_consen  458 S-EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKV  532 (549)
T ss_pred             c-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHH
Confidence            2 34444444  4457789999999999999999999 899999999999999999999999864   3343    2345


Q ss_pred             HHHHHHHHHHHh
Q 043837          279 REALMRAEKALK  290 (409)
Q Consensus       279 ~~~l~~~~~~~~  290 (409)
                      ...+..|++.+.
T Consensus       533 qKAl~lCqKh~~  544 (549)
T PF07079_consen  533 QKALALCQKHLP  544 (549)
T ss_pred             HHHHHHHHHhhh
Confidence            566666665543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.86  E-value=1.9  Score=41.64  Aligned_cols=141  Identities=11%  Similarity=0.072  Sum_probs=72.8

Q ss_pred             HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HH---HHHHHHHHHH
Q 043837           65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LE---ALLHRGRAYY  135 (409)
Q Consensus        65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~---~~~~l~~~~~  135 (409)
                      +...-..++|+++.+.     +| ++..|..+|...+..-.++.|...|-++-.. |.-      ..   --...+.+-.
T Consensus       673 Lve~vgledA~qfiEd-----nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~  745 (1189)
T KOG2041|consen  673 LVEAVGLEDAIQFIED-----NP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA  745 (1189)
T ss_pred             HHHHhchHHHHHHHhc-----CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh
Confidence            3444445666666654     44 5788888998888887888887777665321 110      00   0123444555


Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC  215 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la  215 (409)
                      .-|++++|.+.|-.+=.   .+.     -..   +...+         |+|-.....++..-.-+.+ . ....++.++|
T Consensus       746 ~~g~feeaek~yld~dr---rDL-----Aie---lr~kl---------gDwfrV~qL~r~g~~d~dD-~-~~e~A~r~ig  803 (1189)
T KOG2041|consen  746 FYGEFEEAEKLYLDADR---RDL-----AIE---LRKKL---------GDWFRVYQLIRNGGSDDDD-E-GKEDAFRNIG  803 (1189)
T ss_pred             hhcchhHhhhhhhccch---hhh-----hHH---HHHhh---------hhHHHHHHHHHccCCCcch-H-HHHHHHHHHH
Confidence            55777777776644311   111     000   11111         4444444444322111111 1 1345666666


Q ss_pred             HHHHHcCChhHHHHHHHHH
Q 043837          216 KVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       216 ~~~~~~~~~~~A~~~~~~a  234 (409)
                      ..+..+..|++|.++|...
T Consensus       804 ~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  804 ETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            6666666666666666543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.84  E-value=0.33  Score=39.20  Aligned_cols=74  Identities=16%  Similarity=0.049  Sum_probs=53.8

Q ss_pred             CCCchHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcCChH
Q 043837           68 SGEYTKPLEYIDKVVLVFSP--ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN----NLEALLHRGRAYYYLADHD  141 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~  141 (409)
                      +-.-+.|...|-+  ++..|  +++...+.+|..|. ..+.++|+..+.+++++.+.    +++.+..|+.++..+++++
T Consensus       119 r~~d~~A~~~fL~--~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  119 RFGDQEALRRFLQ--LEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             ccCcHHHHHHHHH--HcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            3345667776654  33333  46777888887776 56788899999999887544    4788888999999998888


Q ss_pred             HHH
Q 043837          142 VAQ  144 (409)
Q Consensus       142 ~A~  144 (409)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            774

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.84  E-value=2.1  Score=42.15  Aligned_cols=58  Identities=14%  Similarity=-0.130  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcC---h------hcHHHHHHHHHHHHhccCHHHHHHHHH
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNIN---E------ELIEALVQRGEAKLLTEDWEGAVEDLK  266 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p------~~~~~~~~la~~~~~~~~~~~A~~~~~  266 (409)
                      .+....+.+.+-.+++..|....+.+....   |      -.+..++..|..+...|+.+.|...|.
T Consensus       362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            344567777888999999998888777542   2      247788999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.73  E-value=0.31  Score=49.99  Aligned_cols=171  Identities=17%  Similarity=0.095  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHH------HHHHH-HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-----CCcH
Q 043837           91 KAKLLKVKLLLAAKDYASAIS------ETGYL-LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD-----PEHS  158 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~  158 (409)
                      .-....+......+.+.+|.+      .+... -.+.|.....+..++.++..++++++|+..-.++.-+.     -++.
T Consensus       933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen  933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred             hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence            334555666677778887777      44422 23467888899999999999999999999988876542     2333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-----CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE  233 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  233 (409)
                      .....+.+++......         ++...|+..+.++..+     .|++|. .+....++..++...++++.|+.+.+.
T Consensus      1013 ~t~~~y~nlal~~f~~---------~~~~~al~~~~ra~~l~~Ls~ge~hP~-~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAV---------KNLSGALKSLNRALKLKLLSSGEDHPP-TALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred             HHHHHhhHHHHHHHhc---------cCccchhhhHHHHHHhhccccCCCCCc-hhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence            3334566666554444         7788888888877663     344554 667778999999999999999999999


Q ss_pred             HHhcCh--------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          234 ALNINE--------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       234 al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      |+..+.        .....+..+++++...+++..|+...+....+
T Consensus      1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            998642        23455666777777777777777666655543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.11  Score=48.90  Aligned_cols=96  Identities=14%  Similarity=0.047  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPA------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHR  130 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  130 (409)
                      ..++.|...++..+|..+++.|.. .+..-|.      .+.....++.||+.+.+.+.|.+++++|-+.+|.++-.....
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~-Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKL-SLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHH-HHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            457788899999999999999988 4444343      356778889999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcc
Q 043837          131 GRAYYYLADHDVAQRHFQKGLRL  153 (409)
Q Consensus       131 ~~~~~~~~~~~~A~~~~~~al~~  153 (409)
                      ..+....+.-++|+.+..+....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            89999999999999988877653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.65  E-value=0.33  Score=45.97  Aligned_cols=179  Identities=17%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             HHHHHHHHHcCChHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-hhCCCcHHHHHHHHHH
Q 043837           26 FHRGSVLRQLCRVKARNSVAEKELS-----QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL-VFSPACSKAKLLKVKL   99 (409)
Q Consensus        26 ~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~p~~~~~~~~~a~~   99 (409)
                      ..+|.++.-.|++.+|...+.+.=.     ........+..+.+++..|.-++-..+..+.+. ..+-+.+   ...|..
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEm  712 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEM  712 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHH
Confidence            4567777778888888777654311     223344557777777777777766666655221 0111111   234667


Q ss_pred             HHHccCHHHHHHHHHH----------HHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837          100 LLAAKDYASAISETGY----------LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN  169 (409)
Q Consensus       100 ~~~~~~~~~A~~~~~~----------al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~  169 (409)
                      +...|+.++|+...-.          +-+++....+.+...+..+..+..+.-|.+.|.+.                 +.
T Consensus       713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~-----------------gD  775 (1081)
T KOG1538|consen  713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM-----------------GD  775 (1081)
T ss_pred             hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh-----------------cc
Confidence            7788888888765321          11222333334444444444444444444444432                 21


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  234 (409)
                      .-   ......++.++|.+|...-++--+.-|+       +|+-.|+.+.+..++++|.+.|-+|
T Consensus       776 ~k---siVqlHve~~~W~eAFalAe~hPe~~~d-------Vy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  776 LK---SLVQLHVETQRWDEAFALAEKHPEFKDD-------VYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HH---HHhhheeecccchHhHhhhhhCcccccc-------ccchHHHHhhhhhhHHHHHHHHHHh
Confidence            11   1122234448888888877776555555       7777777777777777777776655

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.11  Score=43.93  Aligned_cols=73  Identities=22%  Similarity=0.142  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      ......++=.++...++++.|..+.++.+.++|.++.-+..+|.+|.++|.+.-|++.++..++..|+++.+.
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            4456667777889999999999999999999999999999999999999999999999999999999987643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.60  E-value=0.31  Score=37.16  Aligned_cols=84  Identities=11%  Similarity=-0.026  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                      ..+..+..+-....+.+++...+...--+.|+.++....-+.+++..|+|.+|+..++...+-.+..+-....+..|...
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            34445555555577777777777776667788777777778888888888888888877777777777777777777666


Q ss_pred             Hhhc
Q 043837          289 LKMS  292 (409)
Q Consensus       289 ~~~~  292 (409)
                      +...
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            5543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=95.58  E-value=0.015  Score=56.70  Aligned_cols=17  Identities=35%  Similarity=0.534  Sum_probs=12.8

Q ss_pred             ChhhhhhhhcCCCcccc
Q 043837          351 DDDKRARYDRGEDIEET  367 (409)
Q Consensus       351 d~~~~~~~~~~~~~~~~  367 (409)
                      -|.|+.+||+|..-+..
T Consensus      1164 ~PPKmaryDnG~~~n~S 1180 (1282)
T KOG0921|consen 1164 GPPKMARYDNGPSNNNS 1180 (1282)
T ss_pred             CCcccccccCCCccCcc
Confidence            68899999998655443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=1.4  Score=37.64  Aligned_cols=267  Identities=14%  Similarity=0.155  Sum_probs=147.4

Q ss_pred             CChHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHhHHHHH---HHHHHHHHHHHHHHHHHHH----
Q 043837            2 KHYSEALDDLNTAIEADP--------TLSEAYFHRGSVLRQLCRVKARNSVAEK---ELSQLLQAQSTFDSALKLY----   66 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~---~l~~~~~~~~~~~~a~~~~----   66 (409)
                      +++++|+..|.+.+....        +...+...++.+|...|++..-......   .......+.. ......++    
T Consensus        17 ~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~-~KiirtLiekf~   95 (421)
T COG5159          17 NDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKI-TKIIRTLIEKFP   95 (421)
T ss_pred             hhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhH-HHHHHHHHHhcC
Confidence            478999999999987621        1235678899999999997653222211   1111111000 00011111    


Q ss_pred             -hCCCchHHHHHHHHHH---HhhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 043837           67 -DSGEYTKPLEYIDKVV---LVFSPA--CSKAKLLKVKLLLAAKDYASAISETGYLLKE------DENNLEALLHRGRAY  134 (409)
Q Consensus        67 -~~~~~~~A~~~~~~~~---~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~  134 (409)
                       ....++.-+..++..+   ......  ....-..++..++..|+|.+|+......+.-      .|+-..++..-+.+|
T Consensus        96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvy  175 (421)
T COG5159          96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVY  175 (421)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHH
Confidence             1233444444443322   222111  1234456788889999999999888777642      244566788888999


Q ss_pred             HhcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHH-HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837          135 YYLADHDVAQRHFQKGLRL-----DPEHSELKKAYFAL-KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV  208 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  208 (409)
                      ....+..++...+..|-..     .|....   +-..+ .-++.        .+..+|..|-.+|-++++-...-.. ..
T Consensus       176 h~irnv~KskaSLTaArt~Ans~YCPpqlq---a~lDL~sGIlh--------cdd~dyktA~SYF~Ea~Egft~l~~-d~  243 (421)
T COG5159         176 HEIRNVSKSKASLTAARTLANSAYCPPQLQ---AQLDLLSGILH--------CDDRDYKTASSYFIEALEGFTLLKM-DV  243 (421)
T ss_pred             HHHHhhhhhhhHHHHHHHHhhccCCCHHHH---HHHHHhcccee--------eccccchhHHHHHHHHHhccccccc-hH
Confidence            9999988888877766542     333322   22222 22221        1127888899998888874432111 12


Q ss_pred             HH-----HHHHHHHHHHcCChhHHHHHH--HHHHh-cChhcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhhCCCcHHH
Q 043837          209 HL-----YLGLCKVLVKLGRGKDALSSC--TEALN-INEELIEALVQRGEAKLL--TEDWEGAVEDLKSAAQQSPQDMNI  278 (409)
Q Consensus       209 ~~-----~~~la~~~~~~~~~~~A~~~~--~~al~-~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~  278 (409)
                      .+     |..+..+..  +..++....+  ...++ .+....++....+.++-.  +.+|..|+..|+.-+..+|   -+
T Consensus       244 kAc~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~---~i  318 (421)
T COG5159         244 KACVSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS---FI  318 (421)
T ss_pred             HHHHHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH---HH
Confidence            22     223333333  3333332222  23333 345567777777777743  5688888888887766554   44


Q ss_pred             HHHHHHHH
Q 043837          279 REALMRAE  286 (409)
Q Consensus       279 ~~~l~~~~  286 (409)
                      +..+...+
T Consensus       319 RsHl~~LY  326 (421)
T COG5159         319 RSHLQYLY  326 (421)
T ss_pred             HHHHHHHH
Confidence            44444443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.48  E-value=0.056  Score=46.23  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=77.3

Q ss_pred             HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH-RGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      ...-|+++..|...+......+-|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.+++.++|+++.++
T Consensus       100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw  179 (435)
T COG5191         100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW  179 (435)
T ss_pred             hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence            34458899999999999999999999999999999999999999975 66678888999999999999999999999966


Q ss_pred             HHHHHHHHHHH
Q 043837          162 KAYFALKNLLK  172 (409)
Q Consensus       162 ~~~~~l~~~~~  172 (409)
                      ..++.+-..+.
T Consensus       180 ~eyfr~El~yi  190 (435)
T COG5191         180 IEYFRMELMYI  190 (435)
T ss_pred             HHHHHHHHHHH
Confidence            66666554443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.48  E-value=0.58  Score=43.62  Aligned_cols=101  Identities=11%  Similarity=-0.054  Sum_probs=49.7

Q ss_pred             HHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC
Q 043837           26 FHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD  105 (409)
Q Consensus        26 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~  105 (409)
                      ...+..+.+.|-.+.|+...       .+....|+.|+.   .|+.+.|.+...+      .+++..|..+|...+..|+
T Consensus       299 ~~i~~fL~~~G~~e~AL~~~-------~D~~~rFeLAl~---lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~  362 (443)
T PF04053_consen  299 QSIARFLEKKGYPELALQFV-------TDPDHRFELALQ---LGNLDIALEIAKE------LDDPEKWKQLGDEALRQGN  362 (443)
T ss_dssp             HHHHHHHHHTT-HHHHHHHS-------S-HHHHHHHHHH---CT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHCCCHHHHHhhc-------CChHHHhHHHHh---cCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCC
Confidence            33444455555544443332       223333444433   3666666655533      2355667777777777777


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837          106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus       106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                      ++-|.++|+++-.        +-.+..+|...|+.+.-.+..+.|
T Consensus       363 ~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  363 IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence            7777766666432        234455555566554444443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.46  E-value=0.14  Score=49.54  Aligned_cols=127  Identities=19%  Similarity=0.230  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcChh
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK--LGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~  240 (409)
                      +...+...+....+++..+...++..|.--|..++.+-|.+....+....+.+.|+..  .++|..++..+.-++...|.
T Consensus        46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~  125 (748)
T KOG4151|consen   46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR  125 (748)
T ss_pred             hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch
Confidence            5666677777777888888889999999999999999985444356667777777765  56899999999999999999


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      ...++..++.+|...++++-|++.+.-.....|.+........+.+..+
T Consensus       126 i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  126 ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999998888889999866655444444444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.45  E-value=0.37  Score=48.94  Aligned_cols=146  Identities=19%  Similarity=0.110  Sum_probs=104.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837          129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV  208 (409)
Q Consensus       129 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  208 (409)
                      ..-.++...+.|+.|+..|++.-...|...+-..+.+.+|......  +.+.-....+++|+..|++... .|.    -+
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~----~~  552 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK--ASEQGDPRDFTQALSEFSYLHG-GVG----AP  552 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH--HHhcCChHHHHHHHHHHHHhcC-CCC----Cc
Confidence            3446777888999999999999999999888777888888876543  3333333468888888877544 333    34


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT-----EDWEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      .-|...|.+|..++++++-++++.-|++..|++|..-...-.+-.++     .+-..|....--++...|........
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (932)
T PRK13184        553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREE  630 (932)
T ss_pred             hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHH
Confidence            46888999999999999999999999999888876544333322222     23355667777778888876554443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.41  E-value=0.071  Score=37.74  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=38.5

Q ss_pred             HhcCCHHHHHHHHHHHHccCCCCcc-----chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837          181 VSKGKLRVAVEDFKAALALDPNHTA-----HNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN  238 (409)
Q Consensus       181 ~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  238 (409)
                      +..++|..|++.+.+.++.......     ....+..++|.++...|++++|+..+++++.+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4458899998888888775543221     123456667777777777777777777777653

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.39  E-value=0.16  Score=33.89  Aligned_cols=62  Identities=11%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      ++.+..++.+.+.++|+..++++++..++.+. ...++-.+..+|...|+|.+++++...=+.
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555667778888888888887776443 455555666777777777777766554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.33  E-value=1.1  Score=35.32  Aligned_cols=125  Identities=19%  Similarity=0.031  Sum_probs=68.3

Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC  215 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la  215 (409)
                      ..+..++|+..|...-+..-.+.. ..+....+.+....         |+...|+..|.++-...|......-.+...-+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~k---------gdta~AV~aFdeia~dt~~P~~~rd~ARlraa  139 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQK---------GDTAAAVAAFDEIAADTSIPQIGRDLARLRAA  139 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhc---------ccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence            345566666666654443322221 01233333333333         77777777777766655432221233445556


Q ss_pred             HHHHHcCChhHHHHHHHHHH-hcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          216 KVLVKLGRGKDALSSCTEAL-NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       216 ~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      .++...|-|++.....+-.- .-+|--..+.-.||.+-++.|++..|.+.|.....
T Consensus       140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            66666777766554443321 22444455666677777777777777777776665

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=1.1  Score=42.06  Aligned_cols=141  Identities=18%  Similarity=0.122  Sum_probs=93.5

Q ss_pred             hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----C----------------CCCHH---HHHHHHHHHHhcCC
Q 043837           84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-----D----------------ENNLE---ALLHRGRAYYYLAD  139 (409)
Q Consensus        84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~----------------p~~~~---~~~~l~~~~~~~~~  139 (409)
                      ...|.+...++.++.+...+|+.+-|.....++|=.     .                |.|-.   +++..-..+...|-
T Consensus       278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC  357 (665)
T KOG2422|consen  278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC  357 (665)
T ss_pred             ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            346788999999999999999998888887777631     1                22222   22333445567789


Q ss_pred             hHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH-----HccCCCCccchHHHHHH
Q 043837          140 HDVAQRHFQKGLRLDPE-HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA-----LALDPNHTAHNVHLYLG  213 (409)
Q Consensus       140 ~~~A~~~~~~al~~~p~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~  213 (409)
                      +..|.++++-.++++|. ++-   ....+..++...        ..+|+=-+..++..     +...|+     ...-..
T Consensus       358 ~rTA~E~cKlllsLdp~eDPl---~~l~~ID~~ALr--------areYqwiI~~~~~~e~~n~l~~~PN-----~~yS~A  421 (665)
T KOG2422|consen  358 WRTALEWCKLLLSLDPSEDPL---GILYLIDIYALR--------AREYQWIIELSNEPENMNKLSQLPN-----FGYSLA  421 (665)
T ss_pred             hHHHHHHHHHHhhcCCcCCch---hHHHHHHHHHHH--------HHhHHHHHHHHHHHHhhccHhhcCC-----chHHHH
Confidence            99999999999999998 665   333333333222        15555556555544     334454     224445


Q ss_pred             HHHHHHHcCC---hhHHHHHHHHHHhcChh
Q 043837          214 LCKVLVKLGR---GKDALSSCTEALNINEE  240 (409)
Q Consensus       214 la~~~~~~~~---~~~A~~~~~~al~~~p~  240 (409)
                      +|..|+....   -+.|...+.+|+...|.
T Consensus       422 lA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  422 LARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             HHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            5666666555   56788999999998884

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.25  E-value=6.3  Score=43.76  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-  238 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  238 (409)
                      +...|...+.+.+..         |+++.|...+-.|.+..+      +.++...|..+...|+-..|+..+++.++.+ 
T Consensus      1669 ~ge~wLqsAriaR~a---------G~~q~A~nall~A~e~r~------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLA---------GHLQRAQNALLNAKESRL------PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             hHHHHHHHHHHHHhc---------ccHHHHHHHHHhhhhccc------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            334566666555555         888888888887777653      2378888888888888888988888888652 


Q ss_pred             hh----------c------HHHHHHHHHHHHhccCH--HHHHHHHHHHHhhCCCc
Q 043837          239 EE----------L------IEALVQRGEAKLLTEDW--EGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       239 p~----------~------~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~  275 (409)
                      |+          .      ..+....+.-..+.+++  ++-++.|+.+.++.|..
T Consensus      1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred             ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence            22          1      12233344444444543  34456778888887754

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.073  Score=37.34  Aligned_cols=53  Identities=28%  Similarity=0.387  Sum_probs=43.3

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD  351 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d  351 (409)
                      +.+.-.+|+|++..+.+.|+++.|++....|||+.-.--     ....|++|++.|..
T Consensus        55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPY-----lAsKINEAKdlLe~  107 (112)
T KOG0723|consen   55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPY-----LASKINEAKDLLEG  107 (112)
T ss_pred             hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHH-----HHHHHHHHHHHHhc
Confidence            456678999999999999999999999999999864422     33458999988864

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.25  Score=41.93  Aligned_cols=75  Identities=17%  Similarity=0.081  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL  167 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l  167 (409)
                      ..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+++-+.-|++.+...+...|+.+.+..+...+
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            334455778889999999999999999999999999999999999999999999999999999998744333333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.99  E-value=0.058  Score=31.20  Aligned_cols=28  Identities=32%  Similarity=0.318  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          210 LYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       210 ~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      ++.++|.+|...|++++|+.++++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            5556666666666666666666666543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.97  E-value=0.064  Score=30.99  Aligned_cols=31  Identities=26%  Similarity=0.176  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      ..++.++|.+|..+|++++|..++++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999998763

>PRK12798 chemotaxis protein; Reviewed

Probab=94.81  E-value=3.1  Score=37.84  Aligned_cols=214  Identities=21%  Similarity=0.181  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCCCCH--H-HHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVK-LLLAAKDYASAISETGYLLKEDENNL--E-ALLH  129 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~--~-~~~~  129 (409)
                      ........+...|-.|+-.++.+.+..+....-|...-.++.+.. ..+...+..+|+..|+.+--..|...  + ++..
T Consensus       111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR  190 (421)
T PRK12798        111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR  190 (421)
T ss_pred             hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            345556677777888999999988876433344444445555544 34456788999999999988888743  2 3444


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-CCCCccchH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-DPNHTAHNV  208 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~  208 (409)
                      --.+....|+.+++..+-.+-+.....++.....+..+.......         .+-. -...+...+.. +|..   ..
T Consensus       191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~---------~d~~-~~~~l~~~ls~~d~~~---q~  257 (421)
T PRK12798        191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRL---------DDEI-RDARLVEILSFMDPER---QR  257 (421)
T ss_pred             hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc---------cccc-cHHHHHHHHHhcCchh---HH
Confidence            444557889999888888888777777665444555555554443         2111 11224444443 4432   56


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcCh----hcHHHHHHHHHHHHhccCHHHHHHHHHHHH--hhCCCcHHHHH
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINE----ELIEALVQRGEAKLLTEDWEGAVEDLKSAA--QQSPQDMNIRE  280 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~  280 (409)
                      .+|..++..-.-.|+.+-|...-.+++.+..    +...+.+..+.+..-..++++|++.+...-  ++.|.|..+.+
T Consensus       258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~  335 (421)
T PRK12798        258 ELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLE  335 (421)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHH
Confidence            6888999999999999999999999988743    345566666666677777888877775442  23444444433

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=2  Score=38.71  Aligned_cols=162  Identities=19%  Similarity=0.121  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 043837          106 YASAISETGYLLKEDENNLEALLHRGRAYYY------------LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK  173 (409)
Q Consensus       106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~  173 (409)
                      ..++++.-.+.+..+|+...+|...=.++..            +.-.++-+.+...++..+|+...   +|+....++..
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~---aW~hR~w~L~~  121 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG---AWHHRKWVLQK  121 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH---HHHHHHHHHHh
Confidence            3567788888888899887777544333322            12356667888899999999888   88888887765


Q ss_pred             HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC----ChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG----RGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                      ..       .-++..-+...+++++.+|.    +..+|..+=.+.....    ...+=+.++.++|.-++.+..+|..+.
T Consensus       122 ~p-------~~~~~~EL~lcek~L~~D~R----Nfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs  190 (421)
T KOG0529|consen  122 NP-------HSDWNTELQLCEKALKQDPR----NFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRS  190 (421)
T ss_pred             CC-------CchHHHHHHHHHHHHhcCcc----cccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHH
Confidence            41       13578889999999999998    5556665544444332    356778899999999999999999988


Q ss_pred             HHHHh------ccC------HHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          250 EAKLL------TED------WEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       250 ~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      .++..      .|+      ...-++.-..|+-.+|+|..++..
T Consensus       191 ~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  191 LLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            87762      231      234455666777788988876654

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.75  E-value=0.08  Score=45.33  Aligned_cols=88  Identities=9%  Similarity=0.006  Sum_probs=72.6

Q ss_pred             HHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHH-HHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          195 AALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQ-RGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       195 ~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                      ++....|+    .+..|...+....+.+-+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...+.+++.++|
T Consensus        98 R~tnkff~----D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          98 RSTNKFFN----DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             hhhhcCCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            33344455    45578887777788889999999999999999999999987 56677888999999999999999999


Q ss_pred             CcHHHHHHHHHHH
Q 043837          274 QDMNIREALMRAE  286 (409)
Q Consensus       274 ~~~~~~~~l~~~~  286 (409)
                      +++.+|...-+.+
T Consensus       174 ~~p~iw~eyfr~E  186 (435)
T COG5191         174 RSPRIWIEYFRME  186 (435)
T ss_pred             CCchHHHHHHHHH
Confidence            9999887655544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.69  E-value=0.19  Score=45.03  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      +-..+..||+.+++.+-|+....+.|.++|.....+...|.|+..+.+|.+|...+--+.
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445788999999999999999999999999999999999999999999999987665543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.57  E-value=5.2  Score=39.44  Aligned_cols=237  Identities=14%  Similarity=0.114  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH---------------------------HHHHHHHHHHhCCCchHHHHH
Q 043837           25 YFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ---------------------------STFDSALKLYDSGEYTKPLEY   77 (409)
Q Consensus        25 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------------------~~~~~a~~~~~~~~~~~A~~~   77 (409)
                      |+.-+.+....+..+.|...+.+.+.......                           ..+..+...+-.+++..|...
T Consensus       304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~  383 (608)
T PF10345_consen  304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE  383 (608)
T ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            34445566666666666555555554332222                           223455556677999888888


Q ss_pred             HHHHHHhh---CC------CcHHHHHHHHHHHHHccCHHHHHHHHH--------HHHhhCCCCHH---HHHHHHHHHHhc
Q 043837           78 IDKVVLVF---SP------ACSKAKLLKVKLLLAAKDYASAISETG--------YLLKEDENNLE---ALLHRGRAYYYL  137 (409)
Q Consensus        78 ~~~~~~~~---~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~--------~al~~~p~~~~---~~~~l~~~~~~~  137 (409)
                      ... +...   .|      ..+.+++..|..+...|+.+.|+..|.        .+....+.+.-   +..++..++...
T Consensus       384 l~~-~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~  462 (608)
T PF10345_consen  384 LEF-MRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYE  462 (608)
T ss_pred             HHH-HHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhh
Confidence            876 3332   12      247788899999999999999999998        33333333221   334566666655


Q ss_pred             CChHHHHHHHHHHHc-cCCC-----cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-C--CCccchH
Q 043837          138 ADHDVAQRHFQKGLR-LDPE-----HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-P--NHTAHNV  208 (409)
Q Consensus       138 ~~~~~A~~~~~~al~-~~p~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~--~~~~~~~  208 (409)
                      +.-......+..+++ +.|.     +.....++..+-.++       ..+..-...++...+.++++.. .  ++.....
T Consensus       463 ~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~  535 (608)
T PF10345_consen  463 SSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATY-------NTFEPFSSNEAKRHLQEALKMANNKLGNSQLLA  535 (608)
T ss_pred             cccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHH-------hhCCccccHHHHHHHHHHHHHHHHhhccchHHH
Confidence            543332212233332 2221     112111222221111       1111123336666666666544 1  1111134


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc---HH-HH-----HHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEEL---IE-AL-----VQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~-~~-----~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      .++..++..++ .++..+.......+.......   .. .|     -.++..+...|+.++|.....+.-.
T Consensus       536 ~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  536 ILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            45556666666 777777666666666543322   32 33     2355567888999998887776544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.55  E-value=0.068  Score=30.25  Aligned_cols=29  Identities=31%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      +++..+|.+-...++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677888888888888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.36  E-value=4.4  Score=37.76  Aligned_cols=161  Identities=15%  Similarity=0.012  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837           76 EYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP  155 (409)
Q Consensus        76 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  155 (409)
                      .++.+ ++... .+-.+++.++.||... ..++-...+++.++.+-++...-..++..|.. .+...+..+|.+++...-
T Consensus        87 h~c~~-~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI  162 (711)
T COG1747          87 HLCTR-VLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI  162 (711)
T ss_pred             HHHHH-HHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence            34444 44443 4567888999999988 56788889999999988888777788887777 888899999999886432


Q ss_pred             C---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHH-HHHHHHHHHHHcCChhHHHHHH
Q 043837          156 E---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVH-LYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       156 ~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      .   +..+...|..+-....           .+.+.-+....+.-......   ... ++..+-.-|....++.+|+..+
T Consensus       163 ~~~q~~~i~evWeKL~~~i~-----------dD~D~fl~l~~kiqt~lg~~---~~~Vl~qdv~~~Ys~~eN~~eai~Il  228 (711)
T COG1747         163 PRRQNAAIKEVWEKLPELIG-----------DDKDFFLRLQKKIQTKLGEG---RGSVLMQDVYKKYSENENWTEAIRIL  228 (711)
T ss_pred             chhhhhhHHHHHHHHHHhcc-----------ccHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHhccccCHHHHHHHH
Confidence            2   2223334444332211           23333333333322222211   122 2233334455667888888888


Q ss_pred             HHHHhcChhcHHHHHHHHHHHHh
Q 043837          232 TEALNINEELIEALVQRGEAKLL  254 (409)
Q Consensus       232 ~~al~~~p~~~~~~~~la~~~~~  254 (409)
                      .-.++.+..+..+...+..-+..
T Consensus       229 k~il~~d~k~~~ar~~~i~~lRd  251 (711)
T COG1747         229 KHILEHDEKDVWARKEIIENLRD  251 (711)
T ss_pred             HHHhhhcchhhhHHHHHHHHHHH
Confidence            88888887776666655554443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.36  E-value=0.65  Score=31.09  Aligned_cols=62  Identities=16%  Similarity=0.142  Sum_probs=37.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          128 LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       128 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      ...|.-++..++.++|+..++++++..++......++-.+..++...         |+|.+++.+-..-+.
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~---------Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEW---------GKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence            34444455666667777777777776666666545555555555555         666666665544443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.28  E-value=2.9  Score=35.37  Aligned_cols=171  Identities=16%  Similarity=0.070  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCCc--HHHHHHH-HHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENN-LEALLHRGRAYYY-LADHDVAQRHFQKGLRLDPEH--SELKKAY-FAL  167 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~--~~~~~~~-~~l  167 (409)
                      +..+|.+..+.++|++.+.+.++++..+|.- .+-...++.+|-. .+..-.+...+..........  ....... ...
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk   83 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK   83 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence            5678888899999999999999999987763 3445555555532 233344444444433322211  1100000 000


Q ss_pred             HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-----C-----ChhHHHHHHHHHHhc
Q 043837          168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-----G-----RGKDALSSCTEALNI  237 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-----~-----~~~~A~~~~~~al~~  237 (409)
                      ..+...+.        .--.+.+..++..+--...++...+..+-..|..|...     +     -.+.|...|++|+.+
T Consensus        84 ~kie~EL~--------~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~  155 (236)
T PF00244_consen   84 KKIEDELI--------DICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEI  155 (236)
T ss_dssp             HHHHHHHH--------HHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------HHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHH
Confidence            11111000        11223334444333222222221233333445544322     1     136778888888754


Q ss_pred             -----ChhcH---HHHHHHHHHH-HhccCHHHHHHHHHHHHhh
Q 043837          238 -----NEELI---EALVQRGEAK-LLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       238 -----~p~~~---~~~~~la~~~-~~~~~~~~A~~~~~~al~~  271 (409)
                           .|.+|   ....+.+..| ..+++.++|+...++++..
T Consensus       156 a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  156 AKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                 45554   3334445444 5589999999988887653

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.22  E-value=3.4  Score=37.25  Aligned_cols=134  Identities=18%  Similarity=0.095  Sum_probs=89.2

Q ss_pred             HHhcCChHHHHHHHHHHHcc-CCCc-----HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC--CCcc
Q 043837          134 YYYLADHDVAQRHFQKGLRL-DPEH-----SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP--NHTA  205 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~  205 (409)
                      ++.++++.+|...-+..+.. .-.+     .-....|+.+..++...         ++...-...+...+....  ++..
T Consensus       136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~---------~~l~~~rs~l~~~lrtAtLrhd~e  206 (493)
T KOG2581|consen  136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELE---------GRLADIRSFLHALLRTATLRHDEE  206 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhh---------cchHHHHHHHHHHHHHhhhcCcch
Confidence            34457788888776665542 1111     11234566666666655         666665556655554321  1111


Q ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHh----cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALN----INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      ..+.+.+.+-..|+..+.|+.|-....++.-    .+...+...+.+|.+..-+.+|..|.+++-.|+...|++.
T Consensus       207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            1455666777888889999999888877652    1224567778899999999999999999999999999853

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.19  E-value=3.1  Score=35.31  Aligned_cols=212  Identities=17%  Similarity=0.106  Sum_probs=110.0

Q ss_pred             CCchHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-----CCHH-HHHHHHHHHHhcC
Q 043837           69 GEYTKPLEYIDKVVLVFSPACS----KAKLLKVKLLLAAKDYASAISETGYLLKEDE-----NNLE-ALLHRGRAYYYLA  138 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~-~~~~l~~~~~~~~  138 (409)
                      .+.++|+..|.+ ++++.+...    .++-.+..+.+.+++|.+-++.|.+.+..-.     +..+ ....+-..-....
T Consensus        41 ~~p~~Al~sF~k-VlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   41 DEPKEALSSFQK-VLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             cCHHHHHHHHHH-HHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            466777777777 666665542    3455566677778888777777777664211     1111 1111111111112


Q ss_pred             ChHHHHHHHHHHHc---cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--------ccch
Q 043837          139 DHDVAQRHFQKGLR---LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--------TAHN  207 (409)
Q Consensus       139 ~~~~A~~~~~~al~---~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~  207 (409)
                      +.+--...|+..+.   -..+..-+.+.-..++.++...         +.|.+-...+.+.-..+...        ....
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~---------~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL  190 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDR---------GEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL  190 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeH---------HHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence            22222222332222   1111111111222334444333         66666555555544322211        0113


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH--HHH----HHHHHHHhccCHHHHHHHHHHHHhhCC-----CcH
Q 043837          208 VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE--ALV----QRGEAKLLTEDWEGAVEDLKSAAQQSP-----QDM  276 (409)
Q Consensus       208 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~----~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~  276 (409)
                      .++|..--..|..+++-.+-...|++++.+.+.-|.  +.-    -=|..+...|+|++|...|-+|++...     ...
T Consensus       191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt  270 (440)
T KOG1464|consen  191 LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT  270 (440)
T ss_pred             hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence            455666667788888888888899999887543322  221    124567888999999999989987643     333


Q ss_pred             HHHHHHHHHHHHHh
Q 043837          277 NIREALMRAEKALK  290 (409)
Q Consensus       277 ~~~~~l~~~~~~~~  290 (409)
                      .+...+..+...++
T Consensus       271 tCLKYLVLANMLmk  284 (440)
T KOG1464|consen  271 TCLKYLVLANMLMK  284 (440)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444443

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.95  E-value=1.1  Score=40.28  Aligned_cols=169  Identities=15%  Similarity=0.012  Sum_probs=105.0

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837           99 LLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK  172 (409)
Q Consensus        99 ~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~  172 (409)
                      +.....++..-.+.++.=++...++.      .++..+|.-|...|+.+.|++.|.++-........+...+.++-.+-.
T Consensus       119 vE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI  198 (466)
T KOG0686|consen  119 VETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSI  198 (466)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence            33333344444444444444444332      367889999999999999999999988877766666666766666666


Q ss_pred             HHHHHhhHHhcCCHHHHHHHHHHHHccC----CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------Chh
Q 043837          173 KTKSAEDNVSKGKLRVAVEDFKAALALD----PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------NEE  240 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~  240 (409)
                      .+         ++|.....+..++...-    .......+.+...-|.+.+.+++|..|..++-.+..-        .|.
T Consensus       199 ~~---------~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtps  269 (466)
T KOG0686|consen  199 YM---------GNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPS  269 (466)
T ss_pred             hh---------cchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecch
Confidence            66         99988888888877652    1111123446667777888888999999988766432        344


Q ss_pred             cHHHHHHH-HHHHHhccCHH---HHHHHHHHHHhhCCCcH
Q 043837          241 LIEALVQR-GEAKLLTEDWE---GAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       241 ~~~~~~~l-a~~~~~~~~~~---~A~~~~~~al~~~p~~~  276 (409)
                      +..+|-.+ |.+-+...++.   ..-..|+..+++.|.-.
T Consensus       270 dv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr  309 (466)
T KOG0686|consen  270 DVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR  309 (466)
T ss_pred             hhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence            54444332 22222222222   22245666666666543

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.94  E-value=4  Score=35.72  Aligned_cols=53  Identities=15%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837           64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE  119 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  119 (409)
                      ...+..+..+-|+.... +++++|..+.++..+|.--..  -..+|...++++++.
T Consensus       193 ~AWRERnp~~RI~~A~~-ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka  245 (556)
T KOG3807|consen  193 KAWRERNPPARIKAAYQ-ALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKA  245 (556)
T ss_pred             HHHHhcCcHHHHHHHHH-HHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHH
Confidence            34445555555666555 777788877777777654322  245666666666653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.77  E-value=5.2  Score=37.47  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             HHHcCChHHHhHHHH--HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHH
Q 043837           32 LRQLCRVKARNSVAE--KELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASA  109 (409)
Q Consensus        32 ~~~~g~~~~A~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  109 (409)
                      ....++++++.....  +.+...+ ....-..+.-+.++|-.+.|+.+..         ++...+.+   .++.|+.+.|
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~rFeL---Al~lg~L~~A  337 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVT---------DPDHRFEL---ALQLGNLDIA  337 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-HHHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHHhHH---HHhcCCHHHH
Confidence            344677776544443  1121111 1112233444455666677766653         35555554   4688999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837          110 ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus       110 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                      .+..++     .+++..|..||.....+|+++-|..+|.++
T Consensus       338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            876654     346789999999999999999999999985

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.75  E-value=0.14  Score=28.97  Aligned_cols=28  Identities=18%  Similarity=0.153  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKE  119 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~  119 (409)
                      ++..+|.+-+..++|++|+..|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4556666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.65  E-value=0.55  Score=33.19  Aligned_cols=62  Identities=16%  Similarity=0.209  Sum_probs=41.7

Q ss_pred             HHHhcCChHHHHHHHHHHHccCCCcH------HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837          133 AYYYLADHDVAQRHFQKGLRLDPEHS------ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH  203 (409)
Q Consensus       133 ~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  203 (409)
                      .....+++..|++.+.+.+.......      ....++..++.+....         |++++|+..+++++++....
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~---------G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF---------GHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHH
Confidence            34566778888777777776533222      1222455555555555         99999999999999986653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.59  E-value=0.5  Score=40.66  Aligned_cols=65  Identities=20%  Similarity=0.142  Sum_probs=59.8

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL  153 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  153 (409)
                      ...++..++..+...++++.+++.+++.+..+|.+...|..+-.+|...|+...|+..|++.-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999987653

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.55  E-value=4.4  Score=34.91  Aligned_cols=28  Identities=18%  Similarity=0.102  Sum_probs=20.4

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837          122 NNLEALLHRGRAYYYLADHDVAQRHFQK  149 (409)
Q Consensus       122 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~  149 (409)
                      .++..+..+|..+++.+++.+|..+|-.
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~  115 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLL  115 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence            3677888888888888888888877643

; PDB: 3LKU_E 2WPV_G.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.40  E-value=2.5  Score=39.56  Aligned_cols=68  Identities=19%  Similarity=0.142  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc---cCCCCccchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcC
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA---LDPNHTAHNVHLYLGLCKVLVKLGR-GKDALSSCTEALNIN  238 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~  238 (409)
                      .+..++.++..+         |+...|..++..+++   ....++...+.+++.+|..+..++. ..++.+++.+|-+..
T Consensus       451 k~lL~g~~lR~L---------g~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  451 KYLLKGVILRNL---------GDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            456678888888         999999999998884   3333444467799999999999999 999999999997765


Q ss_pred             h
Q 043837          239 E  239 (409)
Q Consensus       239 p  239 (409)
                      .
T Consensus       522 ~  522 (546)
T KOG3783|consen  522 S  522 (546)
T ss_pred             c
Confidence            3

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.32  E-value=6.5  Score=36.11  Aligned_cols=190  Identities=13%  Similarity=0.050  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      +-+.+..+.++..-|-.+.+|+.........++-+.|+....+++...|.   ....++.+|...++.+.-..+|+++..
T Consensus       285 qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q  361 (660)
T COG5107         285 QRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ  361 (660)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence            33444333366667777888888888888888888888888888777665   566777777777776666666666543


Q ss_pred             c--------C-------CCcHH-HHHHHHH-HH---HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837          153 L--------D-------PEHSE-LKKAYFA-LK---NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL  212 (409)
Q Consensus       153 ~--------~-------p~~~~-~~~~~~~-l~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  212 (409)
                      .        +       .++.. ....+.. ..   .+..-  ..+.-.+..-.+.|...|.++-+..--    ...++.
T Consensus       362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~--~~N~v~r~~Gl~aaR~~F~k~rk~~~~----~h~vyi  435 (660)
T COG5107         362 DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCV--HLNYVLRKRGLEAARKLFIKLRKEGIV----GHHVYI  435 (660)
T ss_pred             HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHH--HHHHHHHHhhHHHHHHHHHHHhccCCC----Ccceee
Confidence            1        0       01110 0000000 00   00000  000111124456666777666554311    111332


Q ss_pred             HHH-HHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          213 GLC-KVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       213 ~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      .-| .-+...+++..|...|+-.+...|+++......-..++..++-+.|...|+++++.
T Consensus       436 ~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r  495 (660)
T COG5107         436 YCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER  495 (660)
T ss_pred             eHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence            222 23556778888888888888888877766666666777788888888888877654

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=93.25  E-value=0.21  Score=46.39  Aligned_cols=72  Identities=25%  Similarity=0.362  Sum_probs=48.0

Q ss_pred             cHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCc------hHHHHHHHHHHHHHHHh
Q 043837          275 DMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN------REEAENKFREIAAAYEV  348 (409)
Q Consensus       275 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~------~~~a~~~~~~i~~ay~~  348 (409)
                      ...++.+|..++..|--   ..-++-+.+..-.+...+|++|+++.+..||||.++.      +-.+++.|.-+++|+..
T Consensus       371 E~NIRALLSTLh~VLW~---es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  371 EGNIRALLSTLHYVLWP---ESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             cccHHHHHHHHhHhhcC---ccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555554432   1123344566677899999999999999999997663      45666666677776654


Q ss_pred             c
Q 043837          349 L  349 (409)
Q Consensus       349 l  349 (409)
                      .
T Consensus       448 f  448 (453)
T KOG0431|consen  448 F  448 (453)
T ss_pred             h
Confidence            4

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.20  E-value=4.1  Score=33.51  Aligned_cols=73  Identities=15%  Similarity=0.078  Sum_probs=56.4

Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837           98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus        98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      .-+++.+...+|+...+.-++..|.+......+-..+.-.|+|++|...++-+-.+.|+...-...|..+..+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3456677888888888888888888888888888888888888888888888888888876644445444444

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=93.12  E-value=5.7  Score=34.93  Aligned_cols=166  Identities=12%  Similarity=-0.050  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------------------------ChHHHHHHHHHHHccCC-CcH
Q 043837          106 YASAISETGYLLKEDENNLEALLHRGRAYYYLA--------------------------DHDVAQRHFQKGLRLDP-EHS  158 (409)
Q Consensus       106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------------------------~~~~A~~~~~~al~~~p-~~~  158 (409)
                      -++|+..-.-++.+-|..++++-.++...+...                          -.+++...+.+++.... ...
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY  291 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY  291 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence            468888888888899999998877777665422                          23466666777666543 222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-  237 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  237 (409)
                      .   ....+..+...-   . .-..-+|..-..+|.-...+.|+     +.+-.|.+.+..+..-.+.++...+..... 
T Consensus       292 q---lqAAIaa~HA~a---~-~aedtDW~~I~aLYdaL~~~apS-----PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~  359 (415)
T COG4941         292 Q---LQAAIAALHARA---R-RAEDTDWPAIDALYDALEQAAPS-----PVVTLNRAVALAMREGPAAGLAMVEALLARP  359 (415)
T ss_pred             H---HHHHHHHHHHhh---c-ccCCCChHHHHHHHHHHHHhCCC-----CeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence            2   222233222221   1 12225788878888887788876     446677888777777777777777665543 


Q ss_pred             -ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837          238 -NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM  283 (409)
Q Consensus       238 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  283 (409)
                       -..+...+-.+|..+.++|+.++|...|++++.+.++..+....+.
T Consensus       360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~  406 (415)
T COG4941         360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ  406 (415)
T ss_pred             ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence             2345567778999999999999999999999999988766444333

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.05  E-value=5.2  Score=34.23  Aligned_cols=62  Identities=21%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh------cHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE------LIEALVQRGEAKLLTEDWEGAVEDLKSA  268 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a  268 (409)
                      ...+...+|..|+..|++++|++.++.+......      ...++..+..|+..+|+.+..+...-+.
T Consensus       177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4456678899999999999999999988654322      2456677888888888888877665444

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.03  E-value=1.2  Score=35.63  Aligned_cols=55  Identities=42%  Similarity=0.607  Sum_probs=46.6

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCC------CchHHHHHHHHHHHHHHHhc
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV------DNREEAENKFREIAAAYEVL  349 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~------~~~~~a~~~~~~i~~ay~~l  349 (409)
                      .+.+.+|++.......++++.|+++....|||+..      +-.+.+++++++|.++|+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            67899999999999999999999999999999832      23477888888999988753

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.93  E-value=0.43  Score=26.66  Aligned_cols=30  Identities=7%  Similarity=-0.092  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHH--HHHHHhhCC
Q 043837          244 ALVQRGEAKLLTEDWEGAVED--LKSAAQQSP  273 (409)
Q Consensus       244 ~~~~la~~~~~~~~~~~A~~~--~~~al~~~p  273 (409)
                      .++.+|..+...|++++|+..  |.-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344555555556666666665  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.92  E-value=1.8  Score=35.06  Aligned_cols=44  Identities=18%  Similarity=0.171  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA  227 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  227 (409)
                      .+.++++..+.+++++.+.+...++.++..|+.++..+++++.|
T Consensus       154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            34455555555555544433222444555555555555554444

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.70  E-value=0.15  Score=25.98  Aligned_cols=22  Identities=27%  Similarity=0.083  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHH
Q 043837          244 ALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       244 ~~~~la~~~~~~~~~~~A~~~~  265 (409)
                      +.+.+|.++..+|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3445555555555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=92.69  E-value=3.8  Score=39.27  Aligned_cols=122  Identities=16%  Similarity=0.074  Sum_probs=67.4

Q ss_pred             HHHHHHhCCCchHHHHHHHH---------HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 043837           61 SALKLYDSGEYTKPLEYIDK---------VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRG  131 (409)
Q Consensus        61 ~a~~~~~~~~~~~A~~~~~~---------~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  131 (409)
                      .|..++..|+.++|+.+.-.         +..+++....+.+...+..+..+..+.-|.+.|.+.-..        -.+.
T Consensus       709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiV  780 (1081)
T KOG1538|consen  709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLV  780 (1081)
T ss_pred             HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHh
Confidence            45556777888888776532         122233344455555566666666666666666554221        2344


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH----HHHhhHHhcCCHHHHHHHHHHH
Q 043837          132 RAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT----KSAEDNVSKGKLRVAVEDFKAA  196 (409)
Q Consensus       132 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~A~~~~~~a  196 (409)
                      ..+...++|++|...-++--+.-|+      ++...+.-+...    +.-..+.+.|+-.+|...+++.
T Consensus       781 qlHve~~~W~eAFalAe~hPe~~~d------Vy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL  843 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEFKDD------VYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL  843 (1081)
T ss_pred             hheeecccchHhHhhhhhCcccccc------ccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence            5667788999998887776555554      444444444333    1112233345555555555543

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=92.61  E-value=4.3  Score=37.22  Aligned_cols=64  Identities=13%  Similarity=0.060  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH-HHHHHH--HHHHHHccCHHHHHHHHHHHHhh
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS-KAKLLK--VKLLLAAKDYASAISETGYLLKE  119 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~-~~~~~~--a~~~~~~~~~~~A~~~~~~al~~  119 (409)
                      ...+..+..+++.++|..|...+......+.+... ..+..+  |..++..-++.+|.+.+++.+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            45567888888999999999999884333233222 233333  33445677888898888887765

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=92.59  E-value=0.092  Score=51.85  Aligned_cols=14  Identities=43%  Similarity=0.859  Sum_probs=8.4

Q ss_pred             cccccCCCCCCCCC
Q 043837          383 FTFHFEGGFPGGFG  396 (409)
Q Consensus       383 ~~~~~~gg~~gg~~  396 (409)
                      |+++|+|||||+++
T Consensus       624 ~~~~~~~~~~~~~~  637 (653)
T PTZ00009        624 MPGGMPGGMPGGAG  637 (653)
T ss_pred             CCCCCCCCCCCCCC
Confidence            34446777777554

>COG4907 Predicted membrane protein [Function unknown]

Probab=92.58  E-value=0.55  Score=42.43  Aligned_cols=41  Identities=15%  Similarity=0.241  Sum_probs=24.4

Q ss_pred             HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          249 GEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       249 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      +..+.+-..+..=+..|...-+..|++..+|+..-.--.++
T Consensus       482 ~~~~~~W~aFKnfLsd~s~lke~~pesI~~W~~ylVYatAL  522 (595)
T COG4907         482 AETISKWQAFKNFLSDYSQLKEAKPESIHLWEQYLVYATAL  522 (595)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhCCCcceehHhhhhhhhhhh
Confidence            33444445556666677777777788877776654433333

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.36  E-value=8.3  Score=34.90  Aligned_cols=246  Identities=17%  Similarity=0.108  Sum_probs=138.9

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCC-CHHH
Q 043837           61 SALKLYDSGEYTKPLEYIDKVVLVFSPA--------CSKAKLLKVKLLLAAKDYASAISETGYLLKE-----DEN-NLEA  126 (409)
Q Consensus        61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~  126 (409)
                      -.+.++.++++.+|.++-+..+..+.-.        ....|+.+..+|...++...-...+...+..     +.. ....
T Consensus       132 v~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavL  211 (493)
T KOG2581|consen  132 VLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVL  211 (493)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHH
Confidence            3444566688888888877755444322        2456777788888888866655555554432     222 2334


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837          127 LLHRGRAYYYLADHDVAQRHFQKGLRLDP-EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA  205 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  205 (409)
                      .+.+-..|...+.|+.|-....++.--.. .+.+....++.+|.+....         .+|..|.+++.+|+...|.+..
T Consensus       212 iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiq---------ldYssA~~~~~qa~rkapq~~a  282 (493)
T KOG2581|consen  212 INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQ---------LDYSSALEYFLQALRKAPQHAA  282 (493)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhh---------cchhHHHHHHHHHHHhCcchhh
Confidence            56778888899999999888877653221 2224556777777777766         9999999999999999997432


Q ss_pred             chH--HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHH--HHhccCHHHHHHHHHHHHhhCCCcHHHH--
Q 043837          206 HNV--HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEA--KLLTEDWEGAVEDLKSAAQQSPQDMNIR--  279 (409)
Q Consensus       206 ~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~--  279 (409)
                      .-.  .+...+..+-.-+|++.+-.-..+..++.   ....|+.+..+  .-.+.++.+-++-|..-+..+....-+.  
T Consensus       283 lGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~k---sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRL  359 (493)
T KOG2581|consen  283 LGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRK---SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRL  359 (493)
T ss_pred             hhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHH
Confidence            111  11222233344567766544333332221   22334444333  3344556666666666665554432221  


Q ss_pred             ------HHHHHHHHHHhhcchhhhhhhhcccccCCHH-HHHHHHHH
Q 043837          280 ------EALMRAEKALKMSKRKDWYKILGVSKTASIS-EIKRAYKK  318 (409)
Q Consensus       280 ------~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-e~~~~y~~  318 (409)
                            ..+..+-....+-.-.|.-+.|++....+.+ -+.++.|.
T Consensus       360 R~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRD  405 (493)
T KOG2581|consen  360 RHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRD  405 (493)
T ss_pred             HHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHh
Confidence                  1111111111222234666677776655433 34455554

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=92.33  E-value=0.3  Score=42.79  Aligned_cols=74  Identities=20%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA  163 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  163 (409)
                      ...+.+++.+-+..+.+..|+.....++..+++...+++.++..+..+.++++|++.++.+....|++..+...
T Consensus       275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~  348 (372)
T KOG0546|consen  275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE  348 (372)
T ss_pred             cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence            44566788999999999999999999999999999999999999999999999999999999999999884333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.25  E-value=0.94  Score=39.03  Aligned_cols=65  Identities=14%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      ...++..++..+...++++.++..+++.+..+|-+..+|..+-.+|...|+...|+..|++..+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45578888999999999999999999999999999999999999999999999999999888765

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.18  E-value=0.67  Score=25.87  Aligned_cols=20  Identities=15%  Similarity=-0.044  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHccCHHHHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISE  112 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~  112 (409)
                      ++.+|..+..+|++++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            33444444444444444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.08  E-value=7.9  Score=34.01  Aligned_cols=131  Identities=11%  Similarity=-0.047  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837            4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL   83 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   83 (409)
                      ..+-|+.-..+++++|..+.+|..++.--.  --..+|...+.+++....   ..|.+....-..+.-.+|       ..
T Consensus       200 p~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e---~~yr~sqq~qh~~~~~da-------~~  267 (556)
T KOG3807|consen  200 PPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE---TIYRQSQQCQHQSPQHEA-------QL  267 (556)
T ss_pred             cHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH---HHHhhHHHHhhhccchhh-------hh
Confidence            445677788899999999999988875321  123344444444444322   223222222222221111       11


Q ss_pred             hhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCChHHHHHHH
Q 043837           84 VFSPAC--SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL--EALLHRGRAYYYLADHDVAQRHF  147 (409)
Q Consensus        84 ~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~  147 (409)
                      ..+ .+  ..+-..+|.|..++|+..+|++.++...+-.|-..  .++-++-..+....-|.+....+
T Consensus       268 rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  268 RRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             hcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111 22  33445679999999999999999999988777322  23345555555554444443333

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.01  E-value=2.3  Score=41.32  Aligned_cols=187  Identities=16%  Similarity=0.171  Sum_probs=118.2

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHh---cCChHHHHHHHHHHHccC-CCcH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYY---LADHDVAQRHFQKGLRLD-PEHS  158 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~al~~~-p~~~  158 (409)
                      .+++..++-..|....+|+.-++..+..- .-|+..+      ..+..+.++-+   -|+-++|+...-.+++.. |-.+
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279|consen  200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             CHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            57778888888888999987777666544 4453222      12223333332   367888888888887754 3334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhc
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR-GKDALSSCTEALNI  237 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~  237 (409)
                      +   .+...|.+|..+-.+..+-+.+..+.|+++|+++++..|..     ..=.|++.++...|+ ++...+.-.-.+.+
T Consensus       279 D---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-----~sGIN~atLL~aaG~~Fens~Elq~IgmkL  350 (1226)
T KOG4279|consen  279 D---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-----YSGINLATLLRAAGEHFENSLELQQIGMKL  350 (1226)
T ss_pred             c---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-----hccccHHHHHHHhhhhccchHHHHHHHHHH
Confidence            4   78888999988766666667788899999999999999972     233456666665553 44444433333333


Q ss_pred             Ch--------hcHHHHHHHHH---HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          238 NE--------ELIEALVQRGE---AKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       238 ~p--------~~~~~~~~la~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                      +.        .....|...|.   +..-.+++.+|+..-+...++.|-...+...+..
T Consensus       351 n~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~men  408 (1226)
T KOG4279|consen  351 NSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN  408 (1226)
T ss_pred             HHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence            21        11122222222   2234578999999999999988876554444433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.80  E-value=1.1  Score=40.77  Aligned_cols=61  Identities=18%  Similarity=0.111  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLK--------EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      +...+.+++.-+|+|..|++.++.+--        ..+-...+++..|.+|..+++|.+|++.|..++.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999998875411        1223455789999999999999999999999775

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.67  E-value=0.32  Score=24.75  Aligned_cols=21  Identities=33%  Similarity=0.294  Sum_probs=9.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHH
Q 043837          127 LLHRGRAYYYLADHDVAQRHF  147 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~A~~~~  147 (409)
                      .+.+|.++..+|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344444444444444444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=8.5  Score=33.10  Aligned_cols=201  Identities=13%  Similarity=0.022  Sum_probs=114.7

Q ss_pred             HHHHHHHHHcCChHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHhCCCchHHHHHHHHH---HHhh-CCCcHHH
Q 043837           26 FHRGSVLRQLCRVKARNSVAEKELSQ---------LLQAQSTFDSALKLYDSGEYTKPLEYIDKV---VLVF-SPACSKA   92 (409)
Q Consensus        26 ~~la~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~-~p~~~~~   92 (409)
                      ..+|+-.....++++|+..+.+.+..         .+......+....+...|++..--......   .... .|....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            45677777888888888888887763         223334455666677777776544443320   0000 1222222


Q ss_pred             HHHHHHHH-HHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHcc---CCCcHHHHH
Q 043837           93 KLLKVKLL-LAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLRL---DPEHSELKK  162 (409)
Q Consensus        93 ~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~  162 (409)
                      ...+..-. .....++.-+..+...++-......      .-..+..+++..+.|.+|+..+...+.-   ..+-.....
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            22221111 1234455666666666553222111      2245677889999999999988776642   122222222


Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-----CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      ++..-..++..+         .+..++...+..|-..     +|.  ...+.+-..-|..+....+|..|..+|-++++-
T Consensus       167 vhllESKvyh~i---------rnv~KskaSLTaArt~Ans~YCPp--qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         167 VHLLESKVYHEI---------RNVSKSKASLTAARTLANSAYCPP--QLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             hhhhhHHHHHHH---------HhhhhhhhHHHHHHHHhhccCCCH--HHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            555555666665         6677776666655432     232  112334444567777888999999999999874

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.37  E-value=1.2  Score=38.10  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837          210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAA  269 (409)
Q Consensus       210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  269 (409)
                      .+...+..|...|.+.+|+..+++++.++|-+...+..+-.++..+||--.|++.|++.-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            444567778888999999999999999999888888888888888888888888777653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.21  E-value=1.1  Score=26.42  Aligned_cols=25  Identities=28%  Similarity=0.280  Sum_probs=18.8

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          246 VQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       246 ~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      +.+|.+|+.+|+.+.|.+.+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4677777777777777777777774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.94  E-value=2.3  Score=28.32  Aligned_cols=25  Identities=16%  Similarity=0.112  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      +.....+|+.+-..|++.+|+.+|.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~   30 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYK   30 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3344455555555566665555553

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.72  E-value=1.2  Score=38.91  Aligned_cols=62  Identities=16%  Similarity=0.019  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 043837          109 AISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK  173 (409)
Q Consensus       109 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~  173 (409)
                      |..+|.+|+.+.|++...|+.+|.++...++.-.|+-+|-+++......+.   +..++..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~---A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPS---ARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HH---HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHH
Confidence            566777777777777777777777777777777777777777755433343   55555555443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=90.63  E-value=0.08  Score=47.11  Aligned_cols=11  Identities=45%  Similarity=0.625  Sum_probs=9.7

Q ss_pred             HHHHHHHHhcC
Q 043837          340 REIAAAYEVLG  350 (409)
Q Consensus       340 ~~i~~ay~~l~  350 (409)
                      .+|++||++|+
T Consensus        19 ~EIKkAYRkLA   29 (371)
T COG0484          19 EEIKKAYRKLA   29 (371)
T ss_pred             HHHHHHHHHHH
Confidence            47999999998

>PRK11619 lytic murein transglycosylase; Provisional

Probab=90.41  E-value=20  Score=35.58  Aligned_cols=237  Identities=9%  Similarity=-0.066  Sum_probs=0.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-----------------hHHHHHHHH--HHHHHHHHHHHHHHHHhCC
Q 043837            9 DDLNTAIEADPTLSEAYFHRGSVLRQLCRVKAR-----------------NSVAEKELS--QLLQAQSTFDSALKLYDSG   69 (409)
Q Consensus         9 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-----------------~~~~~~~l~--~~~~~~~~~~~a~~~~~~~   69 (409)
                      ..+.+.....|.+.......+.+....|+.++|                 ...+.....  ..........+....+..+
T Consensus       116 ~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~  195 (644)
T PRK11619        116 RGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG  195 (644)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC


Q ss_pred             CchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837           70 EYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQK  149 (409)
Q Consensus        70 ~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  149 (409)
                      +...|..+... +   .+........+..++..-.+.........     .+........++..-....+.+.|...+.+
T Consensus       196 ~~~lA~~l~~~-l---~~~~~~~a~a~~al~~~p~~~~~~~~~~~-----~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~  266 (644)
T PRK11619        196 NTGLVTYLAKQ-L---PADYQTIASALIKLQNDPNTVETFARTTG-----PTDFTRQMAAVAFASVARQDAENARLMIPS  266 (644)
T ss_pred             CHHHHHHHHHh-c---ChhHHHHHHHHHHHHHCHHHHHHHhhccC-----CChhhHHHHHHHHHHHHHhCHHHHHHHHHH


Q ss_pred             HHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC-HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHH
Q 043837          150 GLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK-LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDAL  228 (409)
Q Consensus       150 al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  228 (409)
                      ......-+..........-......         .. ..+|...+..+.....+     .........+.+..++++.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~lA~~~a~---------~~~~~~a~~w~~~~~~~~~~-----~~~~e~r~r~Al~~~dw~~~~  332 (644)
T PRK11619        267 LVRAQKLNEDQRQELRDIVAWRLMG---------NDVTDEQAKWRDDVIMRSQS-----TSLLERRVRMALGTGDRRGLN  332 (644)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHh---------ccCCHHHHHHHHhcccccCC-----cHHHHHHHHHHHHccCHHHHH


Q ss_pred             HHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837          229 SSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA  268 (409)
Q Consensus       229 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  268 (409)
                      ..+...-....+.....+.+|+++..+|+.++|...|+++
T Consensus       333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=90.33  E-value=0.73  Score=35.11  Aligned_cols=68  Identities=26%  Similarity=0.491  Sum_probs=46.3

Q ss_pred             chhhhhhhhcc--cccCCHHHHHHHHHHHHhccCCCCC----CCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          293 KRKDWYKILGV--SKTASISEIKRAYKKLALQWHPDKN----VDNREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       293 ~~~~~~~~l~~--~~~~~~~e~~~~y~~~a~~~~~d~~----~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      ....||.+.|.  .....+.-+...|....+..|||..    ......+.+--.++++||..|.||=.|++|-.
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            34556666643  3333444444466666777788872    23445677778899999999999999999965

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.78  E-value=1.5  Score=38.23  Aligned_cols=62  Identities=19%  Similarity=0.117  Sum_probs=41.0

Q ss_pred             HHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837          189 AVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL  254 (409)
Q Consensus       189 A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  254 (409)
                      |+.+|.+|+.+.|+    +...|+.+|.++...++.=.|+-+|-+++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~----~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS----NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT----BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC----CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56777777777777    566777777777777777777777777776544446666666666655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=89.26  E-value=15  Score=33.79  Aligned_cols=62  Identities=23%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH--HHHHH--HHHHHhcCChHHHHHHHHHHHcc
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLE--ALLHR--GRAYYYLADHDVAQRHFQKGLRL  153 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--~~~~~~~~~~~~A~~~~~~al~~  153 (409)
                      .....+..++..++|..|...+..++..-|....  .+..+  |..++..-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4456778888999999999999999986344333  34444  44556677899999999998765

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.19  E-value=11  Score=31.17  Aligned_cols=61  Identities=23%  Similarity=0.202  Sum_probs=42.4

Q ss_pred             HHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          217 VLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      .+++.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++..
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            3455666677777777777777777776666777777777777777777777777776543

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.92  E-value=8.9  Score=34.73  Aligned_cols=99  Identities=19%  Similarity=0.182  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--  238 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--  238 (409)
                      ..++..++.-|...         |+.+.|++.|.++-..+.+... ....+.++-.+-..+++|.....+..++...-  
T Consensus       150 Rra~~Dl~dhy~~c---------G~l~~Alr~YsR~RdYCTs~kh-vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~  219 (466)
T KOG0686|consen  150 RRALEDLGDHYLDC---------GQLDNALRCYSRARDYCTSAKH-VINMCLNLILVSIYMGNWGHVLSYISKAESTPDA  219 (466)
T ss_pred             HHHHHHHHHHHHHh---------ccHHHHHhhhhhhhhhhcchHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence            34666666666666         9999999999998777665333 67788889999999999998888888876651  


Q ss_pred             --h----hcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837          239 --E----ELIEALVQRGEAKLLTEDWEGAVEDLKSAA  269 (409)
Q Consensus       239 --p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al  269 (409)
                        .    -.+.+.+.-|.+.+.+++|..|..++-.+.
T Consensus       220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              0    124566777888888889999999886654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=88.79  E-value=20  Score=33.20  Aligned_cols=243  Identities=11%  Similarity=-0.025  Sum_probs=127.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc
Q 043837           10 DLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC   89 (409)
Q Consensus        10 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~   89 (409)
                      .+++++.--|-.++.|+.....+...++-+.|+......+...+..  .+..+..+-...+-+....+|++....+    
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL--~~~lse~yel~nd~e~v~~~fdk~~q~L----  363 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL--TMFLSEYYELVNDEEAVYGCFDKCTQDL----  363 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch--heeHHHHHhhcccHHHHhhhHHHHHHHH----
Confidence            4677777778888888888888888888888877776665543331  1222222222222222233333311110    


Q ss_pred             HHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLA---AKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA  166 (409)
Q Consensus        90 ~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  166 (409)
                       .--+..+..-..   -|+++...+.+-+-+.   ...-+|..+-..-.+..-.+.|...|-++-+.---...   ++..
T Consensus       364 -~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~---vyi~  436 (660)
T COG5107         364 -KRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH---VYIY  436 (660)
T ss_pred             -HHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc---eeee
Confidence             000111111111   2233222222222111   22333433333333444466677777776654312222   2222


Q ss_pred             HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc--HHH
Q 043837          167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL--IEA  244 (409)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~  244 (409)
                      .+.+..        ..++++..|-..|+-.+...|+++    ......-..+...++-..|...|++++..-...  ...
T Consensus       437 ~A~~E~--------~~~~d~~ta~~ifelGl~~f~d~~----~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i  504 (660)
T COG5107         437 CAFIEY--------YATGDRATAYNIFELGLLKFPDST----LYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI  504 (660)
T ss_pred             HHHHHH--------HhcCCcchHHHHHHHHHHhCCCch----HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence            222211        122777778888888887777743    233333445566777778888888776543322  455


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      |..+-..-..-|+...+...-++..++.|....
T Consensus       505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~  537 (660)
T COG5107         505 YDKMIEYESMVGSLNNVYSLEERFRELVPQENL  537 (660)
T ss_pred             HHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence            556666667778888888888888888887543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=88.66  E-value=15  Score=31.70  Aligned_cols=34  Identities=12%  Similarity=0.084  Sum_probs=22.0

Q ss_pred             ChhcHHHHHHHHH-HHHhccCHHHHHHHHHHHHhh
Q 043837          238 NEELIEALVQRGE-AKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       238 ~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~  271 (409)
                      .|.....+..++. .|...++...|...+....+.
T Consensus       136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK  170 (260)
T ss_dssp             SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4555566665554 466778999888877766655

; PDB: 3LKU_E 2WPV_G.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.45  E-value=2.2  Score=36.58  Aligned_cols=59  Identities=17%  Similarity=-0.009  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                      .+...+..|...|.+.+|++..++++.++|-+...+..+-.++...|+--.+++.|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34445667777778888888888888888877777777777777777766666666653

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.07  E-value=24  Score=33.27  Aligned_cols=215  Identities=15%  Similarity=0.073  Sum_probs=128.2

Q ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837           86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF  165 (409)
Q Consensus        86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  165 (409)
                      .|-+...+..+-.++.....+.-....+.+.+.... +..+++.++.+|... ..++-....++.++.+-++..   .-.
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv---~~R  136 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV---IGR  136 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH---HHH
Confidence            455666666777777777778888888999998754 577899999999988 567778888888888877776   444


Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-CC--CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-hc
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-PN--HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE-EL  241 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~  241 (409)
                      .++..|..          .+-+++..+|.+++... |.  +.. ..++|..+-.  +--.+.+.-+....+.-+... ..
T Consensus       137 eLa~~yEk----------ik~sk~a~~f~Ka~yrfI~~~q~~~-i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~  203 (711)
T COG1747         137 ELADKYEK----------IKKSKAAEFFGKALYRFIPRRQNAA-IKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGR  203 (711)
T ss_pred             HHHHHHHH----------hchhhHHHHHHHHHHHhcchhhhhh-HHHHHHHHHH--hccccHHHHHHHHHHHHHhhccch
Confidence            55555443          67788888898887632 21  100 2223332221  111223333332222222111 11


Q ss_pred             HH-HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-Hh-hcchhhhhhhhccccc-CCHHHHHHHHH
Q 043837          242 IE-ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA-LK-MSKRKDWYKILGVSKT-ASISEIKRAYK  317 (409)
Q Consensus       242 ~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~-~~~~~~~~~~l~~~~~-~~~~e~~~~y~  317 (409)
                      .. ++...-.-|....+|++|++.+...++.+..+..+++.+..-.+. .+ .+.-.+|.++-.++.. .+..+....+.
T Consensus       204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFe  283 (711)
T COG1747         204 GSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFE  283 (711)
T ss_pred             HHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHH
Confidence            12 222233456677899999999999999999988887776554332 11 1122345444444432 23344444444


Q ss_pred             H
Q 043837          318 K  318 (409)
Q Consensus       318 ~  318 (409)
                      +
T Consensus       284 k  284 (711)
T COG1747         284 K  284 (711)
T ss_pred             H
Confidence            4

>COG4907 Predicted membrane protein [Function unknown]

Probab=88.00  E-value=0.43  Score=43.10  Aligned_cols=12  Identities=17%  Similarity=0.072  Sum_probs=5.2

Q ss_pred             HHHHHHhcCChh
Q 043837          342 IAAAYEVLGDDD  353 (409)
Q Consensus       342 i~~ay~~l~d~~  353 (409)
                      +.+|++.+-+.+
T Consensus       528 Vvkam~~~~~~e  539 (595)
T COG4907         528 VVKAMRKALDME  539 (595)
T ss_pred             HHHHHHHhCcHh
Confidence            444444444433

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=87.81  E-value=1.7  Score=22.93  Aligned_cols=30  Identities=17%  Similarity=0.151  Sum_probs=26.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSV   31 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~   31 (409)
                      |+++.|...|++++...|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            578899999999999999999999877654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=86.58  E-value=19  Score=30.56  Aligned_cols=176  Identities=16%  Similarity=0.155  Sum_probs=80.6

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhhCCC-cHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q 043837           59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPA-CSKAKLLKVKLLL-AAKDYASAISETGYLLKEDENNL-EALLHRGRAYY  135 (409)
Q Consensus        59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~-~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~  135 (409)
                      ...|...-..++|++.+.+..+ ++..+|. +..-...++.+|- ..+....+...+........... .....+..-|.
T Consensus         5 i~~Aklaeq~eRy~dmv~~mk~-~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk   83 (236)
T PF00244_consen    5 IYLAKLAEQAERYDDMVEYMKQ-LIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK   83 (236)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHH-HHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHH-HHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence            3344555555666666666666 4444443 3444445555442 23444455555544444332220 11111111111


Q ss_pred             -----hcC-ChHHHHHHHHHHHccCCCcHHH-HHHHHHHHHHHHHHHHHhhHH-hcCCHHHHHHHHHHHHc-----cCCC
Q 043837          136 -----YLA-DHDVAQRHFQKGLRLDPEHSEL-KKAYFALKNLLKKTKSAEDNV-SKGKLRVAVEDFKAALA-----LDPN  202 (409)
Q Consensus       136 -----~~~-~~~~A~~~~~~al~~~p~~~~~-~~~~~~l~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~-----~~~~  202 (409)
                           .+. --.+.+..+...|-....+... .-.+...|..+..+.....-- ...-.+.|...|++|+.     +.|.
T Consensus        84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~  163 (236)
T PF00244_consen   84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT  163 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence                 100 0122333333322222222222 223334555555542221110 01224667777777765     5677


Q ss_pred             CccchHHHHHHHHHHH-HHcCChhHHHHHHHHHHh
Q 043837          203 HTAHNVHLYLGLCKVL-VKLGRGKDALSSCTEALN  236 (409)
Q Consensus       203 ~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~  236 (409)
                      +|. ...+..|.+..| -.+++.++|+...++++.
T Consensus       164 ~p~-rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  164 HPL-RLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             SHH-HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             CcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            665 445555666555 448999999998888764

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.50  E-value=3.5  Score=31.58  Aligned_cols=48  Identities=29%  Similarity=0.206  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA  138 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  138 (409)
                      +.....+.-.+..|++.-|.++++.++..+|++..+...++.++..++
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            333444444444555555555555555555555555555555444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.46  E-value=2.9  Score=24.59  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=12.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHH
Q 043837          129 HRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus       129 ~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      .++.+|...|+.+.|...++.++
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHH
Confidence            44555555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.17  E-value=22  Score=36.20  Aligned_cols=174  Identities=13%  Similarity=0.041  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHccCCCcHHHHHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLK----EDENNLEALLHRGRAYYYLADH--DVAQRHFQKGLRLDPEHSELKKAYF  165 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~  165 (409)
                      -+..++..|...|++++|++.+.+...    .++...+.+-.+-..+..++..  +-..++-.-.+..+|.....  ++.
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~--Ift  583 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ--IFT  583 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee--eee
Confidence            356778888889999999999988887    3333344444444444445544  55666666666666654320  111


Q ss_pred             H---HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc--------CChhHHHHH--HH
Q 043837          166 A---LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL--------GRGKDALSS--CT  232 (409)
Q Consensus       166 ~---l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~--~~  232 (409)
                      .   ...-.........++.....+-++.+++.++......   ....+..+...|.+.        ++-+++.+.  .+
T Consensus       584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~---~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~re  660 (877)
T KOG2063|consen  584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT---STLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVRE  660 (877)
T ss_pred             ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc---chHHHHHHHHHHHHHHhhccCchhccccchhhhHHH
Confidence            1   0000011123444556688888999999998866552   122333333333221        122334333  22


Q ss_pred             HHHhc-------Chh-------cHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          233 EALNI-------NEE-------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       233 ~al~~-------~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      +....       +|.       ....|..++.++.++++.++|+..|-..+.
T Consensus       661 kl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  661 KLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             HHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            22211       221       245677788888888988888887766554

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.03  E-value=5.9  Score=36.32  Aligned_cols=64  Identities=16%  Similarity=0.116  Sum_probs=32.4

Q ss_pred             HHHHHHhhHHhcCCHHHHHHHHHHHHccCCC-----CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPN-----HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      ......+...-.|+|..|++.++.. +++..     -+.....+++.+|.+|+.+++|.+|++.|..++.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555556666666655532 11111     1111344556666666666666666666665553

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=85.65  E-value=5.7  Score=39.02  Aligned_cols=114  Identities=23%  Similarity=0.330  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSP----ACSKAKLLKVKLLLAA--KDYASAISETGYLLKEDENNLEALLHR  130 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p----~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l  130 (409)
                      ........++..+++..|..-|.. .+..-|    .......+.+.|++..  ++|.+++....-++...|....+++..
T Consensus        55 ~~~~E~n~~~~K~d~~~~~~~~~~-~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r  133 (748)
T KOG4151|consen   55 ELKEEGNKLFQKRDYEGAMFRYDC-AIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR  133 (748)
T ss_pred             HHHhhhhHHhhhhhhhccchhhhh-hheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence            334455666777777777655555 444444    3456667777777754  689999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837          131 GRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus       131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      +.+|...+.++-|++.+.-....+|.+..+......+..++
T Consensus       134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999998888888999866433444444443

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.64  E-value=9.1  Score=34.97  Aligned_cols=98  Identities=14%  Similarity=0.059  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHH----------HHhhCCCcHHHHHHHHHHHHHccCH----------HHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKV----------VLVFSPACSKAKLLKVKLLLAAKDY----------ASAISETG  114 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~  114 (409)
                      ....+.+|..++....|++|+.++-.+          +++.-.+.+-...-+.+||+.+.+.          ..|.+.|.
T Consensus       163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~  242 (568)
T KOG2561|consen  163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE  242 (568)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence            445677888888888888888877552          2222233444555667888887653          23333333


Q ss_pred             HHHh--------h-CCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837          115 YLLK--------E-DENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus       115 ~al~--------~-~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      ++.-        + .+..++      .+..-|.+.+.+|+-++|.++++.+..
T Consensus       243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3321        1 223332      456779999999999999999998865

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.59  E-value=2.9  Score=22.02  Aligned_cols=26  Identities=19%  Similarity=0.065  Sum_probs=13.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHH
Q 043837          105 DYASAISETGYLLKEDENNLEALLHR  130 (409)
Q Consensus       105 ~~~~A~~~~~~al~~~p~~~~~~~~l  130 (409)
                      +.+.|...|++++...|.++..|...
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            34455555555555555555554443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family

Probab=85.50  E-value=25  Score=31.02  Aligned_cols=47  Identities=15%  Similarity=0.090  Sum_probs=33.1

Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837          102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQK  149 (409)
Q Consensus       102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  149 (409)
                      ..+++.+.++..++.+..+|-..+.++..+.++..+| ++.+...+..
T Consensus       111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~  157 (301)
T TIGR03362       111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRD  157 (301)
T ss_pred             hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence            5566777777778877777777777788888888877 4444444443

This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.95  E-value=7.6  Score=33.22  Aligned_cols=62  Identities=16%  Similarity=-0.038  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN------NLEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      ..+...+|..|+..|++++|++.|+.+......      ...++..+..|+..+|+.+..+.+.-+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345668899999999999999999999765432      23466788889999999988887766554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF12854 PPR_1: PPR repeat

Probab=84.94  E-value=2.9  Score=22.85  Aligned_cols=27  Identities=7%  Similarity=-0.252  Sum_probs=18.3

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGY  115 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~  115 (409)
                      +...|..+...+.+.|+.++|++.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            455666677777777777777776654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.88  E-value=24  Score=35.30  Aligned_cols=150  Identities=14%  Similarity=0.093  Sum_probs=0.0

Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837           98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA  177 (409)
Q Consensus        98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~  177 (409)
                      .++.+..-|.-|+...+.--.-...-...+...|..++..|++++|...|-+++..-....-                 .
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-----------------i  404 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-----------------I  404 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-----------------H


Q ss_pred             hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH------------HHHHHhc--ChhcHH
Q 043837          178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS------------CTEALNI--NEELIE  243 (409)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~------------~~~al~~--~p~~~~  243 (409)
                      ..+++.....+-..+++...+..-.    +..--..|-.||.++++.++-.+.            ++.++++  ..+..+
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla----~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~  480 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLA----NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLD  480 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccc----cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHH


Q ss_pred             HHHHHHH-----------HHHhccCHHHHHHHHHHH
Q 043837          244 ALVQRGE-----------AKLLTEDWEGAVEDLKSA  268 (409)
Q Consensus       244 ~~~~la~-----------~~~~~~~~~~A~~~~~~a  268 (409)
                      --..+|.           ++..+++|++|+.+++.+
T Consensus       481 ~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  481 EAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=84.42  E-value=1.3  Score=43.00  Aligned_cols=39  Identities=23%  Similarity=0.016  Sum_probs=0.0

Q ss_pred             cccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 043837          364 IEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFP  402 (409)
Q Consensus       364 ~~~~~~~~~g~~~~~~~~~~~~~~~gg~~gg~~~~gg~~  402 (409)
                      |..+|++....+..|||++-+++++|||+||.|...|++
T Consensus       564 Pg~aG~PPpPppppg~~gppPPPpp~g~~Gg~ppPP~~g  602 (1102)
T KOG1924|consen  564 PGIAGGPPPPPPPPGGGGPPPPPPPGGFLGGPPPPPPPG  602 (1102)
T ss_pred             CcccCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCC

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=84.31  E-value=0.67  Score=40.80  Aligned_cols=16  Identities=44%  Similarity=0.507  Sum_probs=12.0

Q ss_pred             HHHHHHHHHhcC---Chhh
Q 043837          339 FREIAAAYEVLG---DDDK  354 (409)
Q Consensus       339 ~~~i~~ay~~l~---d~~~  354 (409)
                      -.+|++||++|+   +|+|
T Consensus        18 ~~eikkayrkla~k~HpDk   36 (337)
T KOG0712|consen   18 EEEIKKAYRKLALKYHPDK   36 (337)
T ss_pred             HHHHHHHHHHHHHHhCCCC
Confidence            457999999998   5554

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=84.18  E-value=24  Score=29.65  Aligned_cols=107  Identities=17%  Similarity=0.072  Sum_probs=63.3

Q ss_pred             cCCHHHHHHHHHHHHccCCCCcc--------chHHHHHHHHHHHHHcCChhH-H-HHHHHHHHhc--Chh--cHHHHHHH
Q 043837          183 KGKLRVAVEDFKAALALDPNHTA--------HNVHLYLGLCKVLVKLGRGKD-A-LSSCTEALNI--NEE--LIEALVQR  248 (409)
Q Consensus       183 ~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~-A-~~~~~~al~~--~p~--~~~~~~~l  248 (409)
                      .|+++.|+++..-+|+.+-.-|.        ..++-...-+......|..-+ . ...+..+..-  -|+  ....+...
T Consensus        96 ~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~  175 (230)
T PHA02537         96 IGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKAA  175 (230)
T ss_pred             ccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            39999999999999986432211        122333344445555555321 1 1112222110  122  34566667


Q ss_pred             HHHHH---------hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          249 GEAKL---------LTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       249 a~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      |..+.         ..++...|+.++++|++++|+- -+...+.++...++
T Consensus       176 G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr  225 (230)
T PHA02537        176 GYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK  225 (230)
T ss_pred             HHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence            77773         4568889999999999999873 45555566655554

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=83.19  E-value=40  Score=31.48  Aligned_cols=166  Identities=15%  Similarity=0.066  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCh-------HHHHHHHHHHHccCCC--
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYLADH-------DVAQRHFQKGLRLDPE--  156 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~p~--  156 (409)
                      ....+|.+++.+++|+-|...|+.+.+-..++..      ++-..+.+.+..+..       +....+++.++...-.  
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            4556899999999999999999998875433211      223344444444422       2333344443321111  


Q ss_pred             ----c--HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCcc-chHHHHHHHHHHH--HHcCChh
Q 043837          157 ----H--SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTA-HNVHLYLGLCKVL--VKLGRGK  225 (409)
Q Consensus       157 ----~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~-~~~~~~~~la~~~--~~~~~~~  225 (409)
                          +  ............++...         +.+.+|...+-+....  ..+... ..+.++...|.|+  .......
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~---------~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~  360 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSR---------GGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPS  360 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhc---------CccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCC
Confidence                0  11112233333333333         7777777666655544  222110 0234455566666  2111100


Q ss_pred             HHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          226 DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       226 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                      .-..-++       ..+--+..-|.-|.+.|+...|..+|..++....
T Consensus       361 ~~~~r~R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  361 PGLTRFR-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             ccchhhH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence            0000000       1122234456788999999999999999988764

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.08  E-value=65  Score=33.83  Aligned_cols=72  Identities=13%  Similarity=0.003  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc---HHHHHHHHHHHHhccCHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL---IEALVQRGEAKLLTEDWE  259 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~  259 (409)
                      +-.+.++..-.+|++.-|++.+..+..+..+=.-+..+|.+-+|...+    -.+|+.   -..+..+-.++++.|.++
T Consensus       997 n~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen  997 NHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred             ccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchH
Confidence            777888888888888666544335666666666677888888876543    334442   344555666777777665

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=83.02  E-value=5.1  Score=30.69  Aligned_cols=52  Identities=21%  Similarity=0.286  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY  106 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~  106 (409)
                      .....+..|...+..|++.-|.++.+. ++..+|++..+...++.++.+++.-
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~-l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDH-LVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHH-HHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            345667777777888888888888877 6777788888887777777766643

>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.95  E-value=34  Score=30.44  Aligned_cols=42  Identities=14%  Similarity=-0.084  Sum_probs=31.1

Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      .++.+-+..+..+...+++.++.-.+.+++-+.|+...+...
T Consensus       211 ~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~q  252 (449)
T COG3014         211 LNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQ  252 (449)
T ss_pred             chHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHH
Confidence            355666777777888888888888888888888885554443

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=81.77  E-value=28  Score=31.87  Aligned_cols=44  Identities=14%  Similarity=0.002  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHH
Q 043837            4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEK   47 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   47 (409)
                      .-+|+..++.++..+|.+....+.+..+|..+|-...|...+..
T Consensus       199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~  242 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            45789999999999999999999999999999999988777754

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=81.56  E-value=38  Score=30.13  Aligned_cols=168  Identities=13%  Similarity=0.035  Sum_probs=107.4

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCHH--H
Q 043837           59 FDSALKLYDSGEYTKPLEYIDKVVLVFS-----PACSKAKLLKVKLLLAAKDYASAISETGYLLKED-----ENNLE--A  126 (409)
Q Consensus        59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~--~  126 (409)
                      ...+..++..++|.+|+.+....+.++.     +.-.+++..-..+|..+.+..+|...+..|-...     |....  .
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            3455667888999999998877543332     3346777888889999999999988888775431     22111  2


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHccCC
Q 043837          127 LLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK--AALALDP  201 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~~  201 (409)
                      =..-|..+....+|..|..+|-+|++-..   ++......+..+-.+-..+         +..++.-..+.  .+++...
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMl---------n~~ddv~~lls~K~~l~y~g  282 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIML---------NLPDDVAALLSAKLALKYAG  282 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHh---------cCHHHHHHHHhhHHHHhccC
Confidence            24556777777999999999999998432   2233222222222233333         55555444443  3444333


Q ss_pred             CCccchHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcCh
Q 043837          202 NHTAHNVHLYLGLCKVLVK--LGRGKDALSSCTEALNINE  239 (409)
Q Consensus       202 ~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p  239 (409)
                      .    ...+....+.++.+  +.+|+.|+..|..-+..+|
T Consensus       283 ~----~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  283 R----DIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             c----chHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            3    46677777777654  4578888888888777766

>PF12854 PPR_1: PPR repeat

Probab=81.54  E-value=3.8  Score=22.37  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHH
Q 043837          208 VHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       208 ~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      ...|..+-..|.+.|+.++|++.+
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~   30 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELF   30 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHH
Confidence            334444444555555555554444

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.44  E-value=14  Score=24.93  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHH
Q 043837           57 STFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      ....+|+..-..|+|++|+.+|.
T Consensus         8 ~l~~~Ave~D~~g~y~eAl~~Y~   30 (77)
T cd02683           8 EVLKRAVELDQEGRFQEALVCYQ   30 (77)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHH
Confidence            33444445555555555555543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.13  E-value=35  Score=29.42  Aligned_cols=210  Identities=14%  Similarity=0.048  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HhcCChHH
Q 043837           71 YTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA--KDYASAISETGYLLKEDENNLEALLHRGRAY------YYLADHDV  142 (409)
Q Consensus        71 ~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~------~~~~~~~~  142 (409)
                      ++.-+..++. ++..+|.+..+|..+-.++...  .++..-+...++.++.||.|...|..+-.+.      ..-.++..
T Consensus        90 ldneld~~~~-~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~  168 (328)
T COG5536          90 LDNELDFLDE-ALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKH  168 (328)
T ss_pred             hhcHHHHHHH-HHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHH


Q ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC
Q 043837          143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG  222 (409)
Q Consensus       143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~  222 (409)
                      -.++-..++..++.+..   +|...-......-......++.-+++-+++.-.++-.+|++...-.....-.+.-....-
T Consensus       169 e~eytt~~I~tdi~N~S---aW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~  245 (328)
T COG5536         169 ELEYTTSLIETDIYNNS---AWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIV  245 (328)
T ss_pred             HHHhHHHHHhhCCCChH---HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHH


Q ss_pred             ChhHHHHHHHHHHhc-------------ChhcHHHHHHHHHHHHhccCHHHHHHHHH----HHHhhCCCcHHHHHHHHH
Q 043837          223 RGKDALSSCTEALNI-------------NEELIEALVQRGEAKLLTEDWEGAVEDLK----SAAQQSPQDMNIREALMR  284 (409)
Q Consensus       223 ~~~~A~~~~~~al~~-------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~----~al~~~p~~~~~~~~l~~  284 (409)
                      .+.+-++.+.+-+.+             -|--...+..-..|+.......++-..-.    ++++.+|-....+..+..
T Consensus       246 ~~~e~v~~L~k~~~iin~~el~l~~ken~~~l~~~l~lE~l~~~~~~~~te~d~e~~alv~~~i~~DP~Rr~~y~~l~~  324 (328)
T COG5536         246 MIGEKVEDLGKYIVIINGKELDLGPKENLPCLHSLLELEFLCHAEKALLTERDIEQKALVELAIKVDPARRNLYSTLHE  324 (328)
T ss_pred             HHHHHHHHHHhhheeccccccccCCccccHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHhcChHHHHHHHHHHh

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=80.96  E-value=22  Score=27.02  Aligned_cols=119  Identities=13%  Similarity=0.017  Sum_probs=0.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      +.....+.+++.++..++.++..+..+..+|.....-+     ....+......-..-..+..+.+.+-+++++.++.+ 
T Consensus        21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~-----ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k-   94 (140)
T smart00299       21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQK-----EIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKK-   94 (140)
T ss_pred             CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHH-----HHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHh-


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 043837           82 VLVFSPACSKAKLLKVKLLLAA-KDYASAISETGYLLKEDENNLEALLHRGRAYYYLAD  139 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  139 (409)
                              ..-+.....++... ++++.|++++.+     +.+++.|..++..+.....
T Consensus        95 --------~~~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~~~~  140 (140)
T smart00299       95 --------DGNFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLDKPR  140 (140)
T ss_pred             --------hcCHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHccCC

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.52  E-value=34  Score=33.00  Aligned_cols=124  Identities=16%  Similarity=0.063  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837           23 EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA  102 (409)
Q Consensus        23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~  102 (409)
                      +.+...+..+..+|-       .+++|....+....++.|+.+   |+++.|..+..+      .++..-|..+|...+.
T Consensus       615 ~~rt~va~Fle~~g~-------~e~AL~~s~D~d~rFelal~l---grl~iA~~la~e------~~s~~Kw~~Lg~~al~  678 (794)
T KOG0276|consen  615 EIRTKVAHFLESQGM-------KEQALELSTDPDQRFELALKL---GRLDIAFDLAVE------ANSEVKWRQLGDAALS  678 (794)
T ss_pred             hhhhhHHhHhhhccc-------hHhhhhcCCChhhhhhhhhhc---CcHHHHHHHHHh------hcchHHHHHHHHHHhh


Q ss_pred             ccCHHHHHHHHHHH--------HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          103 AKDYASAISETGYL--------LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       103 ~~~~~~A~~~~~~a--------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      .+++..|.+++.++        +.....+.+.+..+|......|...-|.-.+-..                        
T Consensus       679 ~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~------------------------  734 (794)
T KOG0276|consen  679 AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLS------------------------  734 (794)
T ss_pred             cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHc------------------------


Q ss_pred             HHHhhHHhcCCHHHHHHHHHH
Q 043837          175 KSAEDNVSKGKLRVAVEDFKA  195 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~  195 (409)
                               |+++++++.+.+
T Consensus       735 ---------g~~~~C~~lLi~  746 (794)
T KOG0276|consen  735 ---------GDYEECLELLIS  746 (794)
T ss_pred             ---------CCHHHHHHHHHh

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		1e-37
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		4e-37
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		2e-17
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-17
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-16
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-16
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-15
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-15
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-15
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-14
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		3e-13
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		8e-13
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		9e-13
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-12
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-12
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		3e-12
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-12
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-11
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		5e-11
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		6e-11
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		6e-11
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		8e-11
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-10
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		5e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-08
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		4e-08
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-07
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		4e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		7e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-05
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-05
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-05
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		7e-05
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-04

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 191/376 (50%), Gaps = 25/376 (6%)
Query: 7   ALDDLNTAIEADPTLSEAYFHRGSVL-------------RQLCRVKARNSVAEKELSQLL 53
           AL DL   I+     + A   RG +L             +++ +     +  ++  SQL+
Sbjct: 79  ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138
Query: 54  QA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SXXXXXXXXXXXXXXDYA 107
           ++   Q     AL  + SG+YT  + ++DK++ V    C   +              +  
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPR 194
Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
            AIS+     K   +N EA       YY L DH+++    ++ L+LD +H      Y  +
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           K L K  +SAE+ +  G+   A   +++ +  +P+   + V     +C    K  +  +A
Sbjct: 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           +  C+E L +  + + AL  R EA L+ E ++ A++D ++A + +  D  IRE L +A++
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREIAAA 345
            LK S+++D+YKILGV + A   EI +AY+KLALQWHPD  +N + +++AE KF +IAAA
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 346 YEVLGDDDKRARYDRG 361
            EVL D + R ++D G
Sbjct: 435 KEVLSDPEMRKKFDDG 450

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score =  152 bits (383), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 189/376 (50%), Gaps = 25/376 (6%)
Query: 7   ALDDLNTAIEADPTLSEAYFHRGSVL-------------RQLCRVKARNSVAEKELSQLL 53
           AL DL   I+     + A   RG +L             +++ +     +  ++  SQL+
Sbjct: 79  ALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138
Query: 54  QA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SXXXXXXXXXXXXXXDYA 107
           ++   Q     AL  + SG+YT  + ++DK++ V    C   +              +  
Sbjct: 139 KSDEXQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPR 194
Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
            AIS+     K   +N EA       YY L DH+++    ++ L+LD +H      Y  +
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
           K L K  +SAE+ +  G+   A   +++    +P+   + V     +C    K  +  +A
Sbjct: 255 KKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           +  C+E L    + + AL  R EA L+ E ++ A++D ++A + +  D  IRE L +A++
Sbjct: 315 IRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREIAAA 345
            LK S+++D+YKILGV + A   EI +AY+KLALQWHPD  +N + +++AE KF +IAAA
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 346 YEVLGDDDKRARYDRG 361
            EVL D + R ++D G
Sbjct: 435 KEVLSDPEXRKKFDDG 450

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 7/254 (2%)
Query: 45  AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SXXXXXXXXXXX 101
           AE +L +  + Q     AL  +D  +YT  + ++DK++ V    C   +           
Sbjct: 110 AESQLVKADEXQRLRSQALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECFI 165
Query: 102 XXXDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161
              +   AIS+     K   +N EA       YY L DH+++    ++ L+LD +H    
Sbjct: 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225
Query: 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL 221
             Y  +K L K  +SAE+ +  G+   A   +++    +P+   + V     +C    K 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKD 285
Query: 222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281
            +  +A+  C+E L    + + AL  R EA L+ E ++ A++D ++A + +  D  IRE 
Sbjct: 286 EKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREG 345
Query: 282 LMRAEKALKMSKRK 295
           L +A++ LK S+++
Sbjct: 346 LEKAQRLLKQSQKR 359

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 53/65 (81%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           ++Y++LGV  +AS  +IK+AY+KLAL+WHPDKN DN+EEAE KF+ ++ AYEVL D  KR
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 356 ARYDR 360
           + YDR
Sbjct: 70  SLYDR 74

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 50/64 (78%)
Query: 297 WYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRA 356
           +Y+IL V ++AS  +IK+AY++ ALQWHPDKN DN+E AE KF+E+A AYEVL D  KR 
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 357 RYDR 360
            YDR
Sbjct: 64  IYDR 67

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 51/65 (78%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D+Y++L V + AS   IK+AY+KLAL+WHPDKN +N+EEAE +F+++A AYEVL D  KR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 356 ARYDR 360
             YDR
Sbjct: 70  DIYDR 74

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           ++D+Y+ILGVSKTA   EI++AYK+LA+++HPD+N  ++ EAE KF+EI  AYEVL D  
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQ 60
Query: 354 KRARYDR 360
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           ++D+Y+ILGVSKTA   EI++AYK+LA+++HPD+N  ++ EAE KF+EI  AYEVL D  
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQ 60
Query: 354 KRARYDR 360
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           ++D+Y+ILGVSKTA   EI++AYK+LA+++HPD+N  ++ EAE KF+EI  AYEVL D  
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQ 60
Query: 354 KRARYDR 360
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D Y++LGVS+TAS ++IK+AYKKLA +WHPDKN D    AE++F +I+ AYE+L +++KR
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKR 75
Query: 356 ARYD 359
             YD
Sbjct: 76  TNYD 79

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 4/71 (5%)
Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M K   +Y +LGV   AS +E+K+AY+K+AL++HPDKN D  E+    F++I+ AYEVL 
Sbjct: 4   MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ----FKQISQAYEVLS 59
Query: 351 DDDKRARYDRG 361
           D+ KR  YD+G
Sbjct: 60  DEKKRQIYDQG 70

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 297 WYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRA 356
           +Y ILGV K+AS  +IK+A+ KLA+++HPDKN     +AE KFREIA AYE L D ++R 
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKN--KSPDAEAKFREIAEAYETLSDANRRK 66
Query: 357 RYD 359
            YD
Sbjct: 67  EYD 69

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M K   +Y +LGV   A+  E+K+AY+KLAL++HPDKN +  E    KF++I+ AYEVL 
Sbjct: 2   MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLS 57
Query: 351 DDDKRARYDRG 361
           D  KR  YD+G
Sbjct: 58  DAKKRELYDKG 68

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           KD+Y+ LG+++ AS  EIKRAY++ AL++HPDKN +    AE KF+EIA AY+VL D  K
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRK 60
Query: 355 RARYDR 360
           R  +DR
Sbjct: 61  REIFDR 66

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           +++Y +LGVSKTAS  EI++A+KKLAL+ HPDKN +N   A   F +I  AYEVL D+D 
Sbjct: 21  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDL 79
Query: 355 RARYDR 360
           R +YD+
Sbjct: 80  RKKYDK 85

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           +++Y +LGVSKTAS  EI++A+KKLAL+ HPDKN +N   A   F +I  AYEVL D+D 
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDL 60
Query: 355 RARYDR 360
           R +YD+
Sbjct: 61  RKKYDK 66

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D+Y+ILGV + AS  EIK+AY +LA ++HPD N D+  +A+ KF ++A AYEVL D+ KR
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKR 66
Query: 356 ARYD 359
            +YD
Sbjct: 67  KQYD 70

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 298 YKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRAR 357
           Y +LG+ K A+  +IK++Y+KLAL++HPDKN DN E A+ KF+EI  A+ +L D  KR  
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD-KFKEINNAHAILTDATKRNI 78
Query: 358 YDR 360
           YD+
Sbjct: 79  YDK 81

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
           D+Y+ILGVS+ AS  ++K+AY++LAL++HPDKN  +   A   F+ I  AY VL + +KR
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN--HAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 356 ARYDR 360
            +YD+
Sbjct: 66  KQYDQ 70

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-----VDNREEAENKFREI 342
           AL+ + +KDWY ILG   +A++S++K+ Y+KL L +HPDK          EE   KF EI
Sbjct: 9   ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68
Query: 343 AAAYEVLGDDDKRARYD 359
             A+++LG+++ + +YD
Sbjct: 69  DQAWKILGNEETKKKYD 85

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-----VDNREEAENKFREI 342
           A++   +KDWY ILG   +A+IS++K+ Y+KL L +HPDK          EE   KF EI
Sbjct: 3   AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEI 62
Query: 343 AAAYEVLGDDDKRARYD--RGED 363
             A+++LG+++ +  YD  R ED
Sbjct: 63  DQAWKILGNEETKREYDLQRCED 85

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           KD+Y ILGV  T  +  IK AY++LA ++HPD + +N  +AE KF+++A A+EVL D+ +
Sbjct: 28  KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQR 85
Query: 355 RARYDR 360
           RA YD+
Sbjct: 86  RAEYDQ 91

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 292 SKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD 351
           S+ KD+Y I+GV  T  +  IK AY++LA ++HPD  V    +AE +F+E+A A+EVL D
Sbjct: 2   SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD--VSKEPDAEARFKEVAEAWEVLSD 59
Query: 352 DDKRARYDR 360
           + +RA YD+
Sbjct: 60  EQRRAEYDQ 68

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
           M K    Y +LGVS +A+  E+K+ Y+K AL++HPDK   + E    KF+EI+ A+E+L 
Sbjct: 4   MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILN 59
Query: 351 DDDKRARYDR 360
           D  KR  YD+
Sbjct: 60  DPQKREIYDQ 69

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
           N+ EA  + G AYY   D+D A  ++QK L LDP ++E   A++ L N   K        
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYK-------- 55
Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
            +G    A+E ++ AL LDPN    N   +  L     K G   +A+    +AL ++   
Sbjct: 56  -QGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Query: 242 IEALVQRGEAK 252
            EA    G AK
Sbjct: 111 AEAKQNLGNAK 121

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           R   Y +LGV  TA+ ++IK AY +    +HPD+N  + E AE +F  I+ AY VLG   
Sbjct: 16  RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE-RFTRISQAYVVLGSAT 74
Query: 354 KRARYDRG 361
            R +YDRG
Sbjct: 75  LRRKYDRG 82

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184
           EA  + G AYY   D+D A  ++QK L LDP  +E   A++ L N   K         +G
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYK---------QG 49
Query: 185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244
               A+E ++ AL LDP     +   +  L     K G   +A+    +AL ++    EA
Sbjct: 50  DYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Query: 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274
               G A     D++ A+E  + A +  P+
Sbjct: 106 WYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           +D+Y +LG  + +S+ +I   +K  AL+ HPDK+ +N +  E  F+++  A E+L +++ 
Sbjct: 20  EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVET-FQKLQKAKEILTNEES 78
Query: 355 RARYD 359
           RARYD
Sbjct: 79  RARYD 83

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
           N+ EA  + G AYY   D+D A  ++QK L LDP ++E   A++ L N   K        
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYK-------- 55
Query: 182 SKGKLRVAVEDFKAALALDPNHT 204
            +G    A+E ++ AL LDPN+ 
Sbjct: 56  -QGDYDEAIEYYQKALELDPNNA 77

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 65  LYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAISETGYLLKEDENNL 124
            Y  G+Y K +EY  K  L   P  +              DY  AI      L+ D NN 
Sbjct: 19  YYKQGDYQKAIEYYQKA-LELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNA 77
Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162
           +A   RG AYY   D+  A   +QK L LDP +++ K+
Sbjct: 78  KAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
           N+ EA  + G AYY   D+  A  ++QK L LDP ++    A++ L N   K        
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNAS---AWYNLGNAYYK-------- 55
Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
            +G  + A+E ++ AL LDPN    N   +        K G  + A+    +AL ++   
Sbjct: 56  -QGDYQKAIEYYQKALELDPN----NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Query: 242 IEALVQRGEAK 252
            +A    G AK
Sbjct: 111 AKAKQNLGNAK 121

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
           +G  + A+E ++ AL LDPN    N   +  L     K G  + A+    +AL ++    
Sbjct: 22  QGDYQKAIEYYQKALELDPN----NASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNA 77
Query: 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           +A  +RG A     D++ A+ED + A +  P +   ++ L  A++
Sbjct: 78  KAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
           N+ EA  + G AYY   D+D A  ++QK L L P ++E   A++ L N   K        
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE---AWYNLGNAYYK-------- 55
Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
            +G    A+E ++ AL L PN    N   +  L     K G   +A+    +AL +    
Sbjct: 56  -QGDYDEAIEYYQKALELYPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
Query: 242 IEALVQRGEAK 252
            EA    G AK
Sbjct: 111 AEAKQNLGNAK 121

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 187 RVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV 246
           R A ED   A  L P   A +  L +G CK+  K+   + A+ SC EAL I+    +AL 
Sbjct: 257 RAAAEDADGA-KLQP--VALSCVLNIGACKL--KMSDWQGAVDSCLEALEIDPSNTKALY 311
Query: 247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKD 296
           +R +     ++++ A+ DLK A + +P+D  I+  L++ ++ +K  K K+
Sbjct: 312 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 296 DWYKILGVSKTA-SISEIKRAYKKLALQWHPDKNVDNREE---AENKFREIAAAYEVLGD 351
           + Y +L V++      ++ +AY+ LA + HPD+ V N+EE   AE +FR IA AYE L D
Sbjct: 16  NCYDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRVIATAYETLKD 74
Query: 352 DDKRARYD 359
           D+ +  YD
Sbjct: 75  DEAKTNYD 82

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 208 VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKS 267
            HL +  C  L+KL R  +A+  C   L   E+  +AL +RG+AK      + A +D + 
Sbjct: 232 CHLNIAAC--LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289
Query: 268 AAQQSPQDMNIR---EALMRAEKALKMSKRKDWYK 299
           A + +P D  IR    AL   EKAL   K+K+ YK
Sbjct: 290 AQKYAPDDKAIRRELRALAEQEKAL-YQKQKEMYK 323

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184
           EA  + G AYY   D+D A  ++QK L LDP  +E   A++ L N   K         +G
Sbjct: 4   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYK---------QG 51
Query: 185 KLRVAVEDFKAALALDP 201
               A+E ++ AL LDP
Sbjct: 52  DYDEAIEYYQKALELDP 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-104
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-70
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-05
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-40
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-39
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	1e-38
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-36
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-36
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	7e-35
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-34
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-33
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-33
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-32
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	6e-32
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	8e-32
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	9e-32
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	5e-31
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	3e-30
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-29
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	5e-29
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	9e-29
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-28
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-28
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-26
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	3e-26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-25
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-25
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	9e-25
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-21
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-17
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-17
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-04
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	7e-17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-15
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-13
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-06
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	5e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-08
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-12
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-13
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	6e-11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-10
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-07
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-05
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	8e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-10
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	7e-06
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-10
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-10
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-10
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-04
2guz_A	71	Mitochondrial import inner membrane translocase su	6e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-06
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-05
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	7e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	5e-09
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-05
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	7e-09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	7e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	7e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  315 bits (808), Expect = e-104
 Identities = 111/379 (29%), Positives = 190/379 (50%), Gaps = 19/379 (5%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVK----------------ARNSV 44
           M     AL DL   I+     + A   RG +L +  ++                      
Sbjct: 73  MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKE 132

Query: 45  AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK 104
           A+ +L +  + Q     AL  + SG+YT  + ++DK +L      ++ + L+ +  +   
Sbjct: 133 AQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK-ILEVCVWDAELRELRAECFIKEG 191

Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
           +   AIS+     K   +N EA       YY L DH+++    ++ L+LD +H      Y
Sbjct: 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251

Query: 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224
             +K L K  +SAE+ +  G+   A   +++ +  +P+   + V     +C    K  + 
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284
            +A+  C+E L +  + + AL  R EA L+ E ++ A++D ++A + +  D  IRE L +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

Query: 285 AEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD--NREEAENKFREI 342
           A++ LK S+++D+YKILGV + A   EI +AY+KLALQWHPD   +   +++AE KF +I
Sbjct: 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDI 431

Query: 343 AAAYEVLGDDDKRARYDRG 361
           AAA EVL D + R ++D G
Sbjct: 432 AAAKEVLSDPEMRKKFDDG 450

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  108 bits (271), Expect = 4e-26
 Identities = 47/336 (13%), Positives = 101/336 (30%), Gaps = 28/336 (8%)

Query: 22  SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81
              +   G  L            +  ++ + L+         KL  +G+    L      
Sbjct: 3   HHHHHSSGVDLGTENLYFQ----SMADVEKHLEL------GKKLLAAGQLADALSQFHA- 51

Query: 82  VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD 141
            +   P    A   +  + LA     +A+ +   +++   +   A L RG         D
Sbjct: 52  AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 111

Query: 142 VAQRHFQKGLRLDPEHSELKKAYFALKN---LLKKTKSAEDNVSKGKLRVAVEDFKAALA 198
            A+  F+K L+ +P  +E K+A   L     + +    A +    G    A+      L 
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171

Query: 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW 258
           +       +  L     +  +K G  + A+S    A  +  +  EA  +         D 
Sbjct: 172 VCVW----DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227

Query: 259 EGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKK 318
           E ++ +++   +             + +K  K+ +  +     G    A+       Y+ 
Sbjct: 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT-----SKYES 282

Query: 319 LALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
             ++  P          E         +       +
Sbjct: 283 -VMKTEPSIAEYTVRSKERI----CHCFSKDEKPVE 313

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  224 bits (573), Expect = 3e-70
 Identities = 76/311 (24%), Positives = 143/311 (45%), Gaps = 17/311 (5%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRV-KARNS---------------V 44
           M     AL DL   I      + A   RG +L +  ++ +A +                 
Sbjct: 50  MGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109

Query: 45  AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK 104
           AE +L +  + Q     AL  +D  +YT  + ++DK +L      ++ + L+ +  +   
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK-ILEVCVWDAELRELRAECFIKEG 168

Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
           +   AIS+     K   +N EA       YY L DH+++    ++ L+LD +H      Y
Sbjct: 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228

Query: 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224
             +K L K  +SAE+ +  G+   A   +++ +  +P+   + V     +C    K  + 
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288

Query: 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284
            +A+  C+E L +  + + AL  R EA L+ E ++ A++D ++A + +  D  IRE L +
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348

Query: 285 AEKALKMSKRK 295
           A++ LK S+++
Sbjct: 349 AQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 95.0 bits (237), Expect = 7e-22
 Identities = 43/306 (14%), Positives = 89/306 (29%), Gaps = 24/306 (7%)

Query: 55  AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETG 114
            +   +   KL  +G+    L       +   P    A   +  + LA     +A+ +  
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAA-VDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 115 YLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174
            ++    +   A L RG         D A+  F+K L+ +P   E      A   L+K  
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE---EKEAESQLVKAD 118

Query: 175 ------KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDAL 228
                   A D         A+      L +       +  L     +  +K G  + A+
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVW----DAELRELRAECFIKEGEPRKAI 174

Query: 229 SSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288
           S    A  +  +  EA  +         D E ++ +++   +             + +K 
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234

Query: 289 LKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEV 348
            K+ +  +     G       ++    Y+   ++  P          E         +  
Sbjct: 235 NKLIESAEELIRDG-----RYTDATSKYES-VMKTEPSVAEYTVRSKERI----CHCFSK 284

Query: 349 LGDDDK 354
                +
Sbjct: 285 DEKPVE 290

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 34/189 (17%)

Query: 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS 182
           ++E  L  G+          A   F   +  DP++     AY+    +          ++
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI---AYYRRATVF---------LA 49

Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
            GK + A+ D    +AL  +       L  G    L+K G+  +A     + L  N    
Sbjct: 50  MGKSKAALPDLTKVIALKMDF--TAARLQRGHL--LLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 243 EALVQRGEAKLLTE---------------DWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
           E      +     E               D+  A+  L    +    D  +R   +RAE 
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR--ELRAE- 162

Query: 288 ALKMSKRKD 296
                    
Sbjct: 163 CFIKEGEPR 171

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 15/166 (9%)

Query: 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLK 266
           +V  +L L K L+  G+  DALS    A++ + +   A  +R    L     + A+ DL 
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 267 SAAQQSPQDM-------NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKL 319
                            ++     + ++A       D+ K+L  + +    +   +    
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAE-----DDFKKVLKSNPSEQEEKEAESQLVK 116

Query: 320 ALQWHPDKNVDNREEAENKFREIAAAYE---VLGDDDKRARYDRGE 362
           A +    ++          +       +    +   D   R  R E
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  145 bits (368), Expect = 2e-40
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 287 KALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAY 346
           ++  M   KD+Y ILGV  T  +  IK AY++LA ++HPD + +N  +AE KF+++A A+
Sbjct: 21  QSNAMEL-KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAW 77

Query: 347 EVLGDDDKRARYDR-GEDIEETGMGGGGFNFGGGGQQFTF--HFEGGFPGGFGGDGGFPG 403
           EVL D+ +RA YD+  +   + G G           Q  F   F   F            
Sbjct: 78  EVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHA 137

Query: 404 GFGFNF 409
             G + 
Sbjct: 138 ARGHDL 143

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  138 bits (349), Expect = 4e-39
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           +++Y +LGVSKTAS  EI++A+KKLAL+ HPDKN +N   A   F +I  AYEVL D+D 
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDL 60

Query: 355 RARYDR-GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFG 406
           R +YD+ GE   E   GG   ++      F  + +                  
Sbjct: 61  RKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNS 113

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  133 bits (337), Expect = 1e-38
 Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 2/96 (2%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
             +Y+IL V ++AS  +IK+AY++ ALQWHPDKN DN+E AE KF+E+A AYEVL D  K
Sbjct: 2   ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

Query: 355 RARYDR-GED-IEETGMGGGGFNFGGGGQQFTFHFE 388
           R  YDR G + +  TG G      G GG     H  
Sbjct: 62  REIYDRYGREGLTGTGTGPSRAEAGSGGPGLEHHHH 97

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  129 bits (326), Expect = 2e-36
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 9/118 (7%)

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNR-----EEAENKFREI 342
           A++   +KDWY ILG   +A+IS++K+ Y+KL L +HPDK   +      EE   KF EI
Sbjct: 3   AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEI 62

Query: 343 AAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGG---FPGGFGG 397
             A+++LG+++ +  YD     E+     G  +     ++ +++            GG
Sbjct: 63  DQAWKILGNEETKREYDLQRC-EDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGG 119

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  127 bits (321), Expect = 2e-36
 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 2/92 (2%)

Query: 287 KALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAY 346
            +       ++Y++LGV  +AS  +IK+AY+KLAL+WHPDKN DN+EEAE KF+ ++ AY
Sbjct: 2   SSGSSGMA-NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60

Query: 347 EVLGDDDKRARYDR-GEDIEETGMGGGGFNFG 377
           EVL D  KR+ YDR G D    G G  G + G
Sbjct: 61  EVLSDSKKRSLYDRAGCDSWRAGGGASGPSSG 92

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  123 bits (311), Expect = 7e-35
 Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 5/107 (4%)

Query: 292 SKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD 351
           +K+ D+Y+ILGVSKTA   EI++AYK+LA+++HPD+N  + +EAE KF+EI  AYEVL D
Sbjct: 1   AKQ-DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTD 58

Query: 352 DDKRARYDR-GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGG 397
             KRA YD+ G    E G  GGG   GG    F+  F   F   FGG
Sbjct: 59  SQKRAAYDQYGHAAFEQGGMGGGGFGGGAD--FSDIFGDVFGDIFGG 103

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  122 bits (309), Expect = 2e-34
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 16/127 (12%)

Query: 277 NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAE 336
           +   + M A    +    +D+Y +LG  + +S+ +I   +K  AL+ HPDK+ +N  +A 
Sbjct: 2   SSGSSGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAV 60

Query: 337 NKFREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFG 396
             F+++  A E+L +++ RARYD                +        F           
Sbjct: 61  ETFQKLQKAKEILTNEESRARYDH---------------WRRSQMSMPFQQWEALNDSVK 105

Query: 397 GDGGFPG 403
             G   G
Sbjct: 106 TSGPSSG 112

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  120 bits (302), Expect = 2e-33
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)

Query: 284 RAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIA 343
             +++L  S     Y +LG+ K A+  +IK++Y+KLAL++HPDKN DN  EA +KF+EI 
Sbjct: 7   GRQRSLSTSGE-SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEIN 64

Query: 344 AAYEVLGDDDKRARYDR-GEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPG 393
            A+ +L D  KR  YD+ G      G+      FG       F   G   G
Sbjct: 65  NAHAILTDATKRNIYDKYGSL----GLYVAE-QFGEENVNTYFVS-GPSSG 109

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  119 bits (300), Expect = 2e-33
 Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 287 KALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAY 346
            +       D+Y++L V + AS   IK+AY+KLAL+WHPDKN +N+EEAE +F+++A AY
Sbjct: 2   SSGSSGMV-DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAY 60

Query: 347 EVLGDDDKRARYDR 360
           EVL D  KR  YDR
Sbjct: 61  EVLSDAKKRDIYDR 74

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  117 bits (295), Expect = 1e-32
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 290 KMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVL 349
            M K    Y +LGVS +A+  E+K+ Y+K AL++HPDK   + E    KF+EI+ A+E+L
Sbjct: 3   AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEIL 58

Query: 350 GDDDKRARYDR-GED-IEETGMGGGGFNFGGGG 380
            D  KR  YD+ G +     G   G    GG G
Sbjct: 59  NDPQKREIYDQYGLEAARSGGPSFGPGGPGGAG 91

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  115 bits (290), Expect = 6e-32
 Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 284 RAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN-----REEAENK 338
            +  AL+ + +KDWY ILG   +A++S++K+ Y+KL L +HPDK   +      EE   K
Sbjct: 5   SSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQK 64

Query: 339 FREIAAAYEVLGDDDKRARYDR 360
           F EI  A+++LG+++ + +YD 
Sbjct: 65  FIEIDQAWKILGNEETKKKYDL 86

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  115 bits (290), Expect = 8e-32
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 284 RAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIA 343
            ++     S+    Y +LGV  TA+ ++IK AY +    +HPD+N  +  EA  +F  I+
Sbjct: 7   GSQGDCSYSRT-ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRIS 64

Query: 344 AAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGG 378
            AY VLG    R +YDRG   +E   G G     G
Sbjct: 65  QAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPSSG 99

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  115 bits (289), Expect = 9e-32
 Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
            S    +Y ILGV K+AS  +IK+A+ KLA+++HPDKN     +AE KFREIA AYE L 
Sbjct: 4   GSSG-SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLS 60

Query: 351 DDDKRARYDR-GEDIEETGMGGGGFNFG 377
           D ++R  YD  G     +G G  G + G
Sbjct: 61  DANRRKEYDTLGHSAFTSGKGQSGPSSG 88

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  112 bits (282), Expect = 5e-31
 Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 7/80 (8%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           KD+Y+ LG+++ AS  EIKRAY++ AL++HPDKN +    AE KF+EIA AY+VL D  K
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRK 60

Query: 355 RARYDR-GEDIEETGMGGGG 373
           R  +DR GE+    G+ G G
Sbjct: 61  REIFDRYGEE----GLKGSG 76

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  113 bits (285), Expect = 3e-30
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 286 EKALKMSKRKDWYKILGVSKTASIS--EIKRAYKKLALQWHPDKNVDNREEAENKFREIA 343
           +K L   +      +LG+ ++A  +   +++AY K   ++HPDK  D     E K +++ 
Sbjct: 2   DKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMN 56

Query: 344 AAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEG 389
             Y+ + D  K A         +           G    +   +  
Sbjct: 57  TLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQWPE 102

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  107 bits (270), Expect = 3e-29
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
            S   D+Y+ILGV + AS  EIK+AY +LA ++HPD N D+  +A+ KF ++A AYEVL 
Sbjct: 4   GSSG-DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLS 61

Query: 351 DDDKRARYDR 360
           D+ KR +YD 
Sbjct: 62  DEVKRKQYDA 71

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  106 bits (268), Expect = 5e-29
 Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 5/75 (6%)

Query: 290 KMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVL 349
            M K   +Y +LGV   AS +E+K+AY+K+AL++HPDKN D       +F++I+ AYEVL
Sbjct: 3   AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAYEVL 58

Query: 350 GDDDKRARYDR-GED 363
            D+ KR  YD+ GE+
Sbjct: 59  SDEKKRQIYDQGGEE 73

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  107 bits (268), Expect = 9e-29
 Identities = 36/70 (51%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
            +   D Y++LGVS+TAS ++IK+AYKKLA +WHPDKN D    AE++F +I+ AYE+L 
Sbjct: 13  SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILS 70

Query: 351 DDDKRARYDR 360
           +++KR  YD 
Sbjct: 71  NEEKRTNYDH 80

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  106 bits (266), Expect = 1e-28
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
            S   D+Y+ILGVS+ AS  ++K+AY++LAL++HPDKN      A   F+ I  AY VL 
Sbjct: 4   GSSG-DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLS 60

Query: 351 DDDKRARYDR 360
           + +KR +YD+
Sbjct: 61  NPEKRKQYDQ 70

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  107 bits (268), Expect = 1e-28
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 19/108 (17%)

Query: 287 KALKMSKRKDWYKILGVSKTA-SISEIKRAYKKLALQWHPDKNVDN--REEAENKFREIA 343
             L      + Y +L V++      ++ +AY+ LA + HPD+  +   +  AE +FR IA
Sbjct: 8   PELYCGLE-NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIA 66

Query: 344 AAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGF 391
            AYE L DD+ +  YD                +     Q  +++   +
Sbjct: 67  TAYETLKDDEAKTNYDY---------------YLDHPDQRFYNYYQYY 99

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  100 bits (252), Expect = 1e-26
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 270 QQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV 329
                 +  R ++++           +   ++  +     SE K+  ++L L+WHPDKN 
Sbjct: 2   HHHHHHLVPRGSILK-----------EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNP 50

Query: 330 DNREEAENKFREIAAAYEVLGDDDKRARYDR 360
           +N + A   F+ +      L   +K+A  D+
Sbjct: 51  ENHDIANEVFKHLQNEINRL---EKQAFLDQ 78

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score =  100 bits (250), Expect = 3e-26
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 285 AEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAA 344
           A+   ++   KD + +LGV   AS  E+ +AY+KLA+  HPDK V     +E+ F+ +  
Sbjct: 17  ADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA--PGSEDAFKAVVN 74

Query: 345 AYEVLGDDDKRARYD 359
           A   L  + K     
Sbjct: 75  ARTALLKNIKSGPSS 89

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  107 bits (269), Expect = 4e-26
 Identities = 55/273 (20%), Positives = 99/273 (36%), Gaps = 26/273 (9%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            +    +      AI+ +P L+EAY + G+V ++  +++     A +     L+ +  F 
Sbjct: 46  CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE----AIEHYRHALRLKPDFI 101

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
                    L  +G+    ++      L ++P     +     LL A      A +    
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVS-ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
            ++   N   A  + G  +    +  +A  HF+K + LDP   +   AY  L N+LK+  
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD---AYINLGNVLKE-- 215

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                        AV  +  AL+L PNH    VH  L    V  + G    A+ +   A+
Sbjct: 216 -------ARIFDRAVAAYLRALSLSPNH--AVVHGNLAC--VYYEQGLIDLAIDTYRRAI 264

Query: 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
            +     +A      A         A +   +A
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  106 bits (266), Expect = 1e-25
 Identities = 54/280 (19%), Positives = 101/280 (36%), Gaps = 26/280 (9%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
                 A+    +A++ +P L       G++L+ L R++     A+    + ++ Q  F 
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE----AKACYLKAIETQPNFA 169

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            A           GE    + + +K  +   P    A +    +L  A+ +  A++    
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKA-VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
            L    N+     +    YY     D+A   +++ + L P   +   AY  L N LK+  
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKE-- 283

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                  KG +  A + +  AL L P H   +    L    +  + G  ++A+    +AL
Sbjct: 284 -------KGSVAEAEDCYNTALRLCPTH--ADSLNNLAN--IKREQGNIEEAVRLYRKAL 332

Query: 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
            +  E   A              + A+   K A + SP  
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  101 bits (255), Expect = 4e-24
 Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 26/280 (9%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              +  A          +P  +       S+  Q  R+      +    +  ++      
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDR----SAHFSTLAIKQNPLLA 67

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            A         + G+  + +E+     L   P      +     L+AA D   A+     
Sbjct: 68  EAYSNLGNVYKERGQLQEAIEHYRH-ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
            L+ + +        G     L   + A+  + K +   P  +    A+  L  +     
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV---AWSNLGCVFNA-- 181

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                  +G++ +A+  F+ A+ LDPN    + ++ LG   VL +      A+++   AL
Sbjct: 182 -------QGEIWLAIHHFEKAVTLDPNF--LDAYINLGN--VLKEARIFDRAVAAYLRAL 230

Query: 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
           +++                    + A++  + A +  P  
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 88.0 bits (219), Expect = 3e-19
 Identities = 40/214 (18%), Positives = 76/214 (35%), Gaps = 17/214 (7%)

Query: 62  ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE 121
           A + Y +G++     +  ++     P  +   LL   +    +    +   +   +K++ 
Sbjct: 6   AHREYQAGDFEAAERHCMQL-WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
              EA  + G  Y        A  H++  LRL P+  +    Y  L   L          
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID---GYINLAAALVA-------- 113

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
             G +  AV+ + +AL  +P+   + V   LG   +L  LGR ++A +   +A+      
Sbjct: 114 -AGDMEGAVQAYVSALQYNPDL--YCVRSDLGN--LLKALGRLEEAKACYLKAIETQPNF 168

Query: 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
             A    G       +   A+   + A    P  
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.4 bits (207), Expect = 8e-18
 Identities = 52/251 (20%), Positives = 89/251 (35%), Gaps = 50/251 (19%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
                 A+     A+  DP   +AY + G+VL              KE     +A + + 
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL--------------KEARIFDRAVAAYL 227

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            AL L        P    +  V+  + AC   +   + L  A   Y  AI       +  
Sbjct: 228 RALSL-------SP----NHAVVHGNLACVYYEQGLIDL--AIDTYRRAI-------ELQ 267

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
            +  +A  +   A         A+  +   LRL P H++   +   L N+ ++       
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---SLNNLANIKRE------- 317

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
             +G +  AV  ++ AL + P       H  L    VL + G+ ++AL    EA+ I+  
Sbjct: 318 --QGNIEEAVRLYRKALEVFPEFA--AAHSNLAS--VLQQQGKLQEALMHYKEAIRISPT 371

Query: 241 LIEALVQRGEA 251
             +A    G  
Sbjct: 372 FADAYSNMGNT 382

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 71.8 bits (177), Expect = 6e-14
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 23/171 (13%)

Query: 127 LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL 186
            +      Y   D + A+RH  +  R +P+++        L ++  +           +L
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTG---VLLLLSSIHFQ---------CRRL 49

Query: 187 RVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV 246
             +      A+  +P       +  LG   V  + G+ ++A+     AL +  + I+  +
Sbjct: 50  DRSAHFSTLAIKQNPLL--AEAYSNLGN--VYKERGQLQEAIEHYRHALRLKPDFIDGYI 105

Query: 247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-------NIREALMRAEKALK 290
               A +   D EGAV+   SA Q +P          N+ +AL R E+A  
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 47/178 (26%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
                 A+D    AIE  P   +AY +  + L++   V      AE   +  L+   T  
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE----AEDCYNTALRLCPTHA 305

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            +L        + G   +                            A + Y  A+     
Sbjct: 306 DSLNNLANIKREQGNIEE----------------------------AVRLYRKAL----- 332

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK 173
             +       A  +             A  H+++ +R+ P  ++   AY  + N LK+
Sbjct: 333 --EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---AYSNMGNTLKE 385

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 99.1 bits (247), Expect = 2e-25
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 292 SKRKDWYKILGVSKTASIS--EIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVL 349
            +      +LG+ ++A  +   +++AY K   ++HPDK  D     E K +++   Y+ +
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKM 59

Query: 350 GDDDKRARYDRG--EDIEETGMGGGGFNFGGGGQQFTF 385
            D  K A                 G   +      F  
Sbjct: 60  EDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNE 97

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  105 bits (264), Expect = 9e-25
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
              + ++Y +LGVSKTAS  EI++A+KKLAL+ HPDKN +N   A   F +I  AYEVL 
Sbjct: 18  RHDQ-NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLK 75

Query: 351 DDDKRARYDRGEDIEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFPGGFG 406
           D+D R +YD+  +       GG +      +     ++            F     
Sbjct: 76  DEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVN 131

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  104 bits (262), Expect = 1e-24
 Identities = 37/299 (12%), Positives = 67/299 (22%), Gaps = 26/299 (8%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           ++     L  L  A    P    A    G   + L  V+         L Q         
Sbjct: 221 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR----LLPVLCQAHGLTPQQV 276

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            A+              + L  + +     +P    A         A +     +     
Sbjct: 277 VAIASNSGGKQALETVQRLLPVLCQA-HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 335

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
                   + A+         L           +   L PE      A  +     +   
Sbjct: 336 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV---AIASNGGGKQA-- 390

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                     ++  +     A  L P      V            L   +  L    +A 
Sbjct: 391 -------LETVQRLLPVLCQAHGLTPE----QVVAIASHDGGKQALETVQRLLPVLCQAH 439

Query: 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR 294
            +  + + A+   G  +   E     +     A      D  +  A +    AL   K+
Sbjct: 440 GLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 93.3 bits (232), Expect = 9e-21
 Identities = 34/296 (11%), Positives = 66/296 (22%), Gaps = 57/296 (19%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           ++     L  L  A    P    A                      + L  + +      
Sbjct: 85  LETVQRLLPVLCQAHGLTPQQVVAIASHDGGK--------------QALETVQRLLPVLC 130

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A  L                    +P    A         A +   + +          
Sbjct: 131 QAHGL--------------------TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
              + A+   G     L           +   L P+      A  +     +        
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV---AIASNGGGKQA------- 220

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
                ++  +     A  L P      V            L   +  L    +A  +  +
Sbjct: 221 --LETVQRLLPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-------NIREALMRAEKAL 289
            + A+      K   E  +  +  L  A   +PQ +         ++AL   ++ L
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 330

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.3 bits (201), Expect = 6e-17
 Identities = 37/294 (12%), Positives = 70/294 (23%), Gaps = 57/294 (19%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
            + A +     ++ D         RG V                     ++A   + +AL
Sbjct: 20  LTVAGELRGPPLQLDTGQLLKIAKRGGV-------------------TAVEAVHAWRNAL 60

Query: 64  KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN 123
                     PL          +P    A         A +     +             
Sbjct: 61  -------TGAPLN--------LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105

Query: 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK 183
           + A+         L           +   L PE      A  +     +           
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV---AIASHDGGKQA---------L 153

Query: 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243
             ++  +     A  L P      V            L   +  L    +A  +  + + 
Sbjct: 154 ETVQALLPVLCQAHGLTPEQ----VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

Query: 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-------NIREALMRAEKALK 290
           A+   G  K   E  +  +  L  A   +PQ +         ++AL   ++ L 
Sbjct: 210 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 263

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 33/191 (17%)

Query: 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSE------LKKAYFALKNLLKKTKSAEDNVS 182
               A    A   VA       L+LD              A  A+         A  N++
Sbjct: 9   QWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLT 68

Query: 183 ----------------KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKD 226
                              ++  +     A  L P      V            L   + 
Sbjct: 69  PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASHDGGKQALETVQR 124

Query: 227 ALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-------NIR 279
            L    +A  +  E + A+      K   E  +  +  L  A   +P+ +         +
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184

Query: 280 EALMRAEKALK 290
           +AL   ++ L 
Sbjct: 185 QALETVQRLLP 195

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  102 bits (256), Expect = 7e-24
 Identities = 49/323 (15%), Positives = 88/323 (27%), Gaps = 65/323 (20%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR----------------------- 37
                + ++    A+E  P  S+A   R S    L                         
Sbjct: 72  TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIE 131

Query: 38  ---------------------VKARNSVAEKELSQLLQAQSTFDSALK---LYDSGEYTK 73
                                 + R S      + L      FDS L+   +  S  Y  
Sbjct: 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191

Query: 74  PLEYIDKVV-LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR 132
               +   +  ++S       +    L  +   Y S +S         EN   AL + G 
Sbjct: 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251

Query: 133 AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVED 192
            ++   +   AQ   Q+ + L P       +Y  L   L           K   +   + 
Sbjct: 252 FHFLKNNLLDAQVLLQESINLHPTP----NSYIFLALTLAD---------KENSQEFFKF 298

Query: 193 FKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAK 252
           F+ A+ L+P         Y    ++   L   K+A     +A ++N E +   +Q     
Sbjct: 299 FQKAVDLNPE----YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354

Query: 253 LLTEDWEGAVEDLKSAAQQSPQD 275
                +  +         + P  
Sbjct: 355 YKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 97.9 bits (244), Expect = 2e-22
 Identities = 41/311 (13%), Positives = 90/311 (28%), Gaps = 38/311 (12%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              Y   L             + A  + G        +      A+  L + +    T +
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD----AQVLLQESINLHPTPN 277

Query: 61  S----ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYL 116
           S    AL L D     +  ++  K  +  +P        + ++    +DY +A  +    
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKA-VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336

Query: 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS 176
              +  N+   +      Y       ++  F +     P   E          +L     
Sbjct: 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE---VPTFFAEILTD--- 390

Query: 177 AEDNVSKGKLRVAVEDFKAALALDPNH-TAHN-----------VHLYLGLCKVLVKLGRG 224
                 +G    A++ +  A  L+      H            +          +   + 
Sbjct: 391 ------RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL-- 282
             A+   T+A  ++    +A +   + KL  E  + A+E  + +A  +       +A   
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 283 ---MRAEKALK 290
               + +K L+
Sbjct: 505 AEAAKIQKRLR 515

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 87.9 bits (218), Expect = 5e-19
 Identities = 47/315 (14%), Positives = 99/315 (31%), Gaps = 49/315 (15%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            K+++EA+     AIE DP     Y +  +       ++       +  ++ L+ +    
Sbjct: 38  AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEK----VIEFTTKALEIKPDHS 93

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLV--FSPACSKAKLLKVKLLLAAKDYASAISET 113
            AL          G +T  +  +  + L   F  A  +  L +     A K     +S+ 
Sbjct: 94  KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153

Query: 114 ----GYLLKEDENNLEALLH-----RGRAYYYLADHDVAQRHFQKGLRLDP----EHSEL 160
                 +L  + +               +    +++D A       L+       E   +
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213

Query: 161 KKAYF---------ALKNLLKKTKSAEDNV-----------SKGKLRVAVEDFKAALALD 200
                          L          E+              K  L  A    + ++ L 
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273

Query: 201 PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEG 260
           P   ++    +L L   L      ++      +A+++N E       RG+   + +D++ 
Sbjct: 274 PTPNSYI---FLAL--TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328

Query: 261 AVEDLKSAAQQSPQD 275
           A ED + A   +P++
Sbjct: 329 AKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 43/307 (14%), Positives = 85/307 (27%), Gaps = 30/307 (9%)

Query: 4   YSEALDDLNTAIEADP----TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTF 59
           +     D+       P      +    +RG+              A K     ++     
Sbjct: 3   HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNE----AIKYYQYAIELDPNE 58

Query: 60  DSALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAI---S 111
                        +G+  K +E+  K  L   P  SKA L +     +  ++  A+   S
Sbjct: 59  PVFYSNISACYISTGDLEKVIEFTTK-ALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117

Query: 112 ETGYLLKEDENNLEALLHRGRAYYYLAD-HDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170
                   D  ++E +L R      +   ++   +   +G ++ P ++ L   +    + 
Sbjct: 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177

Query: 171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS 230
           L+         +      A      AL    + T     +   L             LS+
Sbjct: 178 LE----VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT--KSTDMYHSLLSA 231

Query: 231 CTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM------NIREALMR 284
            T    + E    AL   G    L  +   A   L+ +    P                 
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN 291

Query: 285 AEKALKM 291
           +++  K 
Sbjct: 292 SQEFFKF 298

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 21/187 (11%), Positives = 42/187 (22%), Gaps = 17/187 (9%)

Query: 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243
           G       D      L P+                       +A+     A+ ++     
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-------NIREALMRAEKALKMSKRKD 296
                    + T D E  +E    A +  P          +  E+L     A+       
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD----- 115

Query: 297 WYKIL----GVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDD 352
              +L         +    ++R   K A++   +    +            +     G  
Sbjct: 116 -LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174

Query: 353 DKRARYD 359
           D      
Sbjct: 175 DSHLEVS 181

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  101 bits (254), Expect = 1e-23
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 26/297 (8%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            + + E LD  N   +    L+ +  H G               A +++ + ++     +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG----AHEDIKKAIELFPRVN 271

Query: 61  S----ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYL 116
           S    AL + D  + T+   Y DK  L      S     + ++    ++Y  A  +    
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKA-LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330

Query: 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS 176
            + D  N+   +      Y     D  +  F +  R  PE  E          +L     
Sbjct: 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---VPNFFAEILTD--- 384

Query: 177 AEDNVSKGKLRVAVEDFKAALALDPN-HTAHN----VHLYLGLCKVLVKLGRGKDALSSC 231
                 K     A++ +  A+ L+      +     +     L      +    +A +  
Sbjct: 385 ------KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288
            +A  ++    +A +   + KL  ED + A+   + +A  +       +A+  AE A
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA 495

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 42/319 (13%), Positives = 97/319 (30%), Gaps = 40/319 (12%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR----VKARNSVAEKELSQLLQAQ 56
           +    + ++    A+E  P  S+    R S    L +    +   + ++          +
Sbjct: 52  VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIE 111

Query: 57  STFDSALKLYDSGEYTKPLEYIDKVVLV---FSPACSKAKLLKVKLL---------LAAK 104
              +  L      +  +    ID         S   +K +  K + L             
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171

Query: 105 DYASAISETGYLLKEDENNLEALL-----HRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159
                 +      + D+  +  L                    A R F++ L  + E  +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231

Query: 160 LKKAYF-ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL 218
           LK+    +L++             K     A ED K A+ L P   ++    Y+ L  ++
Sbjct: 232 LKEKLAISLEHT------GIFKFLKNDPLGAHEDIKKAIELFPRVNSYI---YMAL--IM 280

Query: 219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-- 276
                  +  +   +AL ++         RG+   + ++++ A +D   A +  P+++  
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340

Query: 277 -----NIREALMRAEKALK 290
                 +     + +    
Sbjct: 341 YIQLACLAYRENKFDDCET 359

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 88.3 bits (219), Expect = 3e-19
 Identities = 47/278 (16%), Positives = 81/278 (29%), Gaps = 45/278 (16%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           +        + + + EAD  L     +           K      +K      +A   F+
Sbjct: 170 IFKPELTFANYDESNEADKELMNGLSNLY---------KRSPESYDKADESFTKAARLFE 220

Query: 61  SALKLYDSGEYTKP---LEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLL 117
             L   +  E  K    +                 K LK   L A +D   AI       
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHT---------GIFKFLKNDPLGAHEDIKKAI------- 264

Query: 118 KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177
            E    + + ++         D      +F K L+LD  +S     Y+    +       
Sbjct: 265 -ELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS---VYYHRGQMNFI---- 316

Query: 178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237
                      A +DF  A  LDP     N+  Y+ L  +  +  +  D  +  +EA   
Sbjct: 317 -----LQNYDQAGKDFDKAKELDPE----NIFPYIQLACLAYRENKFDDCETLFSEAKRK 367

Query: 238 NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
             E  E      E      D++ A++    A +   + 
Sbjct: 368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 24/295 (8%), Positives = 71/295 (24%), Gaps = 30/295 (10%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            K Y +A+   N A+E        Y +  +    +  +K       +  ++ L+ +  + 
Sbjct: 19  NKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKK----VVEMSTKALELKPDYS 73

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLV--FSPACSKAKLLKVKLLLAAKDYASAISE- 112
             L          G++   +  +  + L   F+ A  +  L +     A         + 
Sbjct: 74  KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133

Query: 113 ------------TGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160
                            ++D+      +    +++ +   ++   ++ +    D E    
Sbjct: 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193

Query: 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK 220
               +                +       ++       L                     
Sbjct: 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK----LAISLEHTGIFKFL 249

Query: 221 LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
                 A     +A+ +    + + +          D          A +    +
Sbjct: 250 KNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN 303

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 25/246 (10%)

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
           E +    AL  +G  ++    +D A +++   L L  +       Y  L           
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV----FYSNLSACYVS----- 51

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA---L 235
                G L+  VE    AL L P+       + L        LG+  DA+   +      
Sbjct: 52  ----VGDLKKVVEMSTKALELKPD----YSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103

Query: 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRK 295
           + N+  IE +++R   K      +    D+ +A     +         + ++    S   
Sbjct: 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163

Query: 296 DWYKILGVSKTASISEIKRAYK-----KLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
                       + +    + +        L     ++ ++ ++A+  F + A  +E   
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223

Query: 351 DDDKRA 356
           D +   
Sbjct: 224 DKNNED 229

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 18/185 (9%)

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
              K   A++ +  AL L  +   ++    L  C   V +G  K  +   T+AL +  + 
Sbjct: 18  RNKKYDDAIKYYNWALELKEDPVFYS---NLSAC--YVSVGDLKKVVEMSTKALELKPDY 72

Query: 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ-SPQDMNIREALMRAEKALKMSKRKDWYKI 300
            + L++R  A      +  A+ DL   +      D +I   L R      MSK K+    
Sbjct: 73  SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKE---- 128

Query: 301 LGVSKTASISEIKRAYKKL-ALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYD 359
                     +I  A      L   P K   +++E       +A+ + +   +   A YD
Sbjct: 129 -------KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYD 181

Query: 360 RGEDI 364
              + 
Sbjct: 182 ESNEA 186

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 90.7 bits (226), Expect = 5e-21
 Identities = 43/293 (14%), Positives = 87/293 (29%), Gaps = 52/293 (17%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            + + EA++  N A E          +R +                 E  +   A ST +
Sbjct: 18  ARQFDEAIEHYNKAWELHKD-ITYLNNRAAAE--------------YEKGEYETAISTLN 62

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A++     E     + I           SK+            D    I        E 
Sbjct: 63  DAVEQGR--EMRADYKVI-----------SKSFARIGNAYHKLGDLKKTI--------EY 101

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
                           L + +   +  +    ++PE +E                     
Sbjct: 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAE---EARLEGKEYFT------- 151

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
             K     AV+ +   +   P     +   Y      L KL    +A++ C +A+  +  
Sbjct: 152 --KSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK 293
            + A +++  A++  +++  A+E L +A  +  +  N   A    +   K S+
Sbjct: 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 18/154 (11%), Positives = 45/154 (29%), Gaps = 18/154 (11%)

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
           +  +     G  +Y     D A  H+ K   L  + +              +        
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT----YLNNRAAAEYE-------- 50

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
            KG+   A+     A+             Y  + K   ++G     L    + +   ++ 
Sbjct: 51  -KGEYETAISTLNDAVEQGRE----MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS 105

Query: 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
           +    +  +      + E  ++  ++ A  +P+ 
Sbjct: 106 LTEH-RTADILTKLRNAEKELKKAEAEAYVNPEK 138

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 86.6 bits (215), Expect = 4e-19
 Identities = 35/270 (12%), Positives = 74/270 (27%), Gaps = 45/270 (16%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
            +EA        +A P   EA+   G    +  +       A   L+          +  
Sbjct: 37  LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL----AIIALNHARMLDPKDIAVH 92

Query: 64  K-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
                   +       L  +    L+  P                  Y    S       
Sbjct: 93  AALAVSHTNEHNANAALASLRA-WLLSQP-----------------QYEQLGSVNLQADV 134

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
           + ++    +      +    ++   +      L ++P  ++    + +L  L        
Sbjct: 135 DIDD--LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ---LHASLGVLYNL----- 184

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
                     A  + + A+ L P+     +   LG    L    R ++AL +   AL+IN
Sbjct: 185 ----SNNYDSAAANLRRAVELRPDD--AQLWNKLGA--TLANGNRPQEALDAYNRALDIN 236

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
              +  +     +      ++ A + L  A
Sbjct: 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 41/252 (16%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
              A+  LN A   DP     +                             A ++  + L
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSH--------------TNEHNANAALASLRAWL 116

Query: 64  KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKV--KLLLAAKDYASAISETGYLLKEDE 121
                 E    +     V +      S+        +         +A+       + + 
Sbjct: 117 LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL-------EMNP 169

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
           N+ +     G  Y    ++D A  + ++ + L P+ ++    +  L   L          
Sbjct: 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---LWNKLGATLAN-------- 218

Query: 182 SKGKLRVAVEDFKAALALDPNHT-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
              + + A++ +  AL ++P +         + +      + +   A      A+ +   
Sbjct: 219 -GNRPQEALDAYNRALDINPGYVRVMY---NMAV--SYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 241 LIEALVQRGEAK 252
                 +     
Sbjct: 273 GTTPTGEASREA 284

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 28/187 (14%), Positives = 53/187 (28%), Gaps = 23/187 (12%)

Query: 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159
           +L   + A A      + +      EA    G          +A         LDP+   
Sbjct: 31  MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90

Query: 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT-AHNVHL-------- 210
               + AL               +     A+   +A L   P +    +V+L        
Sbjct: 91  ---VHAALAVSHTN---------EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD 138

Query: 211 --YLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
                           ++  +    AL +N    +     G    L+ +++ A  +L+ A
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198

Query: 269 AQQSPQD 275
            +  P D
Sbjct: 199 VELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 34/176 (19%)

Query: 118 KEDEN---NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174
            E  N     E  +  G +   LA+   A   F+   +  PE  E   A+ +L     + 
Sbjct: 12  FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE---AWRSLGLTQAE- 67

Query: 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234
                     K  +A+     A  LDP      VH  L +            AL+S    
Sbjct: 68  --------NEKDGLAIIALNHARMLDPKD--IAVHAALAV--SHTNEHNANAALASLRAW 115

Query: 235 LNINEELIEALVQRGEAKLLTED---------------WEGAVEDLKSAAQQSPQD 275
           L    +  +      +A +  +D               +      L +A + +P D
Sbjct: 116 LLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 24/245 (9%), Positives = 56/245 (22%), Gaps = 88/245 (35%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              Y E    L+ A+E +P  ++ +   G +                  +    A +   
Sbjct: 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLY--------------NLSNNYDSAAANLR 196

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A++L       +P                              D A       +     
Sbjct: 197 RAVEL-------RP------------------------------DDAQL-----W----- 209

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
            N L      G           A   + + L ++P +       + +             
Sbjct: 210 -NKL------GATLANGNRPQEALDAYNRALDINPGYVR---VMYNMAVSYSN------- 252

Query: 181 VSKGKLRVAVEDFKAALALDPNHT-AHNV-------HLYLGLCKVLVKLGRGKDALSSCT 232
               +  +A +    A+ +    T             ++     +L  + R      +  
Sbjct: 253 --MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310

Query: 233 EALNI 237
           + +  
Sbjct: 311 QNVEP 315

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 88.9 bits (220), Expect = 4e-19
 Identities = 34/301 (11%), Positives = 68/301 (22%), Gaps = 33/301 (10%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           +      L  L  A    P    A    G   + L  V+         L Q         
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQR----LLPVLCQAHGLTPDQV 565

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            A+              + L  + +     +     A    +    A +     +     
Sbjct: 566 VAIASNGGGKQALETVQRLLPVLCQA-HGLTQVQVVAIASNIGGKQALETVQRLLPVLCQ 624

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
                   + A+         L           +   L P+      A  +     +   
Sbjct: 625 AHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASNGGGKQAL- 680

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                     ++  +     A  L                     L   +  L    +A 
Sbjct: 681 --------ETVQRLLPVLCQAHGLTQEQVV----AIASNNGGKQALETVQRLLPVLCQAH 728

Query: 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD-------MNIREALMRAEKA 288
            +  + + A+   G  K   E  +  +  L  A   +P         +  ++AL   ++ 
Sbjct: 729 GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRL 788

Query: 289 L 289
           L
Sbjct: 789 L 789

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 82.0 bits (202), Expect = 6e-17
 Identities = 38/324 (11%), Positives = 74/324 (22%), Gaps = 43/324 (13%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           ++     L  L       P    A        + L  V+         L Q         
Sbjct: 442 LETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQ----LLPVLCQAHGLTPDQV 497

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            A+              + L  + +     +P    A         A +     +     
Sbjct: 498 VAIASNIGGKQALATVQRLLPVLCQA-HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE-----------LKKAY 164
                 + + A+   G     L           +   L                 L+   
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQ 616

Query: 165 FALKNLLKKTKSAEDNV-----------SKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213
             L  L +        V           +   ++  +     A  L P+          G
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV--AIASNG 674

Query: 214 LCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273
                  L   +  L    +A  + +E + A+      K   E  +  +  L  A   +P
Sbjct: 675 G--GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

Query: 274 QDM-------NIREALMRAEKALK 290
             +         ++AL   ++ L 
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLP 756

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 80.5 bits (198), Expect = 2e-16
 Identities = 35/299 (11%), Positives = 69/299 (23%), Gaps = 34/299 (11%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
               L  L  A    P    A        + L  V+         L Q          A+
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQR----LLPVLCQAHGLTPDQVVAI 365

Query: 64  K-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
                         + L  + +     +P    A +       A +     +        
Sbjct: 366 ASNGGGKQALETVQRLLPVLCQA-HGLTPDQVVA-IASNGGKQALETVQRLLPVLCQAHG 423

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
              + + A+         L           +   L P       A  +     +      
Sbjct: 424 LTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV---AIASHDGGKQAL---- 476

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
                  ++  +     A  L P+                  L   +  L    +A  + 
Sbjct: 477 -----ETVQQLLPVLCQAHGLTPDQVV----AIASNIGGKQALATVQRLLPVLCQAHGLT 527

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-------NIREALMRAEKALK 290
            + + A+   G  K   E  +  +  L  A   +P  +         ++AL   ++ L 
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 586

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 79.3 bits (195), Expect = 5e-16
 Identities = 33/298 (11%), Positives = 64/298 (21%), Gaps = 33/298 (11%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
               L  L  A    P    A        + L             L Q          A+
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL----ETVQRLLPVLCQTHGLTPAQVVAI 466

Query: 64  K-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
                         + L  + +     +P    A    +    A       +        
Sbjct: 467 ASHDGGKQALETVQQLLPVLCQA-HGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
              + + A+   G     L           +   L P+      A  +     +      
Sbjct: 526 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASNGGGKQA----- 577

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
                  ++  +     A  L                     L   +  L    +A  + 
Sbjct: 578 ----LETVQRLLPVLCQAHGLTQVQVV----AIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-------NIREALMRAEKAL 289
              + A+      K   E  +  +  L  A   +P  +         ++AL   ++ L
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 687

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 78.9 bits (194), Expect = 7e-16
 Identities = 35/299 (11%), Positives = 70/299 (23%), Gaps = 26/299 (8%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           ++     L  L  A    P    A    G   + L             L Q         
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL----ETVQRLLPVLCQAHGLTQVQV 599

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            A+              + L  + +     +PA   A         A +     +     
Sbjct: 600 VAIASNIGGKQALETVQRLLPVLCQA-HGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ 658

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
                 + + A+   G     L           +   L  E      A  +     +   
Sbjct: 659 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVV---AIASNNGGKQAL- 714

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                     ++  +     A  L P+     V            L   +  L    +A 
Sbjct: 715 --------ETVQRLLPVLCQAHGLTPD----QVVAIASNGGGKQALETVQRLLPVLCQAH 762

Query: 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR 294
            +    + A+      K   E  +  +  L      +   +    + +  ++AL+  +R
Sbjct: 763 GLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQR 821

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 78.5 bits (193), Expect = 8e-16
 Identities = 32/273 (11%), Positives = 69/273 (25%), Gaps = 18/273 (6%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSA 62
            ++A +     ++ D         RG V        +RN++    L+    Q  +   + 
Sbjct: 140 LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNN 199

Query: 63  LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN 122
                     + L  + +     +PA   A         A +     +           +
Sbjct: 200 GGKQALETVQRLLPVLCQA-HGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPD 258

Query: 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS 182
            + A+         L           +   L P+      A  +     +          
Sbjct: 259 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASHGGGKQA--------- 306

Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
              ++  +     A  L P+                  L   +  L    +A  +  + +
Sbjct: 307 LETVQRLLPVLCQAHGLTPDQVV----AIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362

Query: 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
            A+   G  K   E  +  +  L  A   +P  
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 73.5 bits (180), Expect = 4e-14
 Identities = 36/298 (12%), Positives = 70/298 (23%), Gaps = 32/298 (10%)

Query: 6   EALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-QSTFDSALK 64
                    I A P  +        V +Q    +A  ++            Q      +K
Sbjct: 103 TVAVTYQHIITALPEATHE--DIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160

Query: 65  LYDSGEYTKPLEYIDK------VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
           +   G  T                L  +PA   A         A +     +        
Sbjct: 161 IAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHG 220

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
                + A+         L           +   L P+      A  +     +      
Sbjct: 221 LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV---AIASNIGGKQA----- 272

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
                  ++  +     A  L P+     V            L   +  L    +A  + 
Sbjct: 273 ----LETVQRLLPVLCQAHGLTPD----QVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-------NIREALMRAEKAL 289
            + + A+      K   E  +  +  L  A   +P  +         ++AL   ++ L
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 382

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 40/294 (13%), Positives = 78/294 (26%), Gaps = 54/294 (18%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
             +Y+EA++  N            Y  R     +L            +     +   T+ 
Sbjct: 16  NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL-----------AKYDLAQKDIETYF 64

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
           S +                      + A S       K+L+     + AI +    +  D
Sbjct: 65  SKVNA--------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD 104

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
              L+     G  +Y   +  +A ++ +K +R      +    ++ L             
Sbjct: 105 TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK---VFYELGQAYYY------- 154

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKV-LVKLGRGKDALSSCTEALNINE 239
               +   A   F   L L PN   +  +L+            +   A     + + +  
Sbjct: 155 --NKEYVKADSSFVKVLELKPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210

Query: 240 E--------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285
                    LIEA         +  D   A    K+     P +    + L   
Sbjct: 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 34/259 (13%)

Query: 99  LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR---HFQKGLRLDP 155
            L    +YA AI     L  +  N+      R   YY LA +D+AQ+    +   +    
Sbjct: 12  FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK 71

Query: 156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC 215
             S     +     +L K         KG+  +A++ ++AA+  D       + +Y  + 
Sbjct: 72  AKSA---DFEYYGKILMK---------KGQDSLAIQQYQAAVDRDTT----RLDMYGQIG 115

Query: 216 KVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
                 G    A+    + +       +   + G+A    +++  A        +  P  
Sbjct: 116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

Query: 276 MNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEA 335
                   RA  A     ++                 K  Y+K  ++         ++E 
Sbjct: 176 YIGYLWRARANAAQDPDTKQG--------------LAKPYYEK-LIEVCAPGGAKYKDEL 220

Query: 336 ENKFREIAAAYEVLGDDDK 354
                 IA  Y +  D  K
Sbjct: 221 IEANEYIAYYYTINRDKVK 239

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 37/189 (19%), Positives = 58/189 (30%), Gaps = 24/189 (12%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
               S A+     A++ D T  + Y   GS              A + + + ++  +T  
Sbjct: 87  KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL----AIQYMEKQIRPTTTDP 142

Query: 61  SA-----LKLYDSGEYTKPLEYIDKVVLVFSPACSKA----------KLLKVKLLLAAKD 105
                     Y + EY K      K VL   P               +    K  LA   
Sbjct: 143 KVFYELGQAYYYNKEYVKADSSFVK-VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201

Query: 106 YASAISETGYLLKEDENNL-EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
           Y   I        + ++ L EA  +    Y    D   A   ++  L LDP + +   A 
Sbjct: 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK---AI 258

Query: 165 FALKNLLKK 173
             LK  L+ 
Sbjct: 259 DGLKMKLEH 267

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 83.2 bits (206), Expect = 9e-18
 Identities = 42/287 (14%), Positives = 86/287 (29%), Gaps = 48/287 (16%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
               +  +  AI  DP  +EA+   G    +    +A    A   L + L+ Q     AL
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQA----AIVALQRCLELQPNNLKAL 136

Query: 64  K-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
                   ++       E +    +  +P                  Y   +        
Sbjct: 137 MALAVSYTNTSHQQDACEALKN-WIKQNP-----------------KYKYLVKNKKGSPG 178

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
                 ++ +            +  +  + +    + +  +       L  L        
Sbjct: 179 LTRRMSKSPVDSSV-------LEGVKELYLEAAHQNGDMID-PDLQTGLGVLFHL----- 225

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
                G+   A++ F AAL + P    +++   LG    L    R ++A+ + T AL I 
Sbjct: 226 ----SGEFNRAIDAFNAALTVRPED--YSLWNRLGA--TLANGDRSEEAVEAYTRALEIQ 277

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285
              I +    G + +    +  AV +  +A     +  N ++    A
Sbjct: 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 40/286 (13%), Positives = 76/286 (26%), Gaps = 54/286 (18%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS 61
             +  A   + +  E    +   +                        +Q  Q Q T  +
Sbjct: 3   MEFERAKAAVESDTEFWDKMQAEWEEMARR-------------NWISENQEAQNQVTVSA 49

Query: 62  ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE 121
           + K Y         ++                  +    L   D    I      + +D 
Sbjct: 50  SEKGYYFHTENPFKDW-------------PGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
            + EA    G       +   A    Q+ L L P + +   A  AL              
Sbjct: 97  GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK---ALMALAVSYTN-------- 145

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC---------- 231
                + A E  K  +  +P +     +L            R   +              
Sbjct: 146 -TSHQQDACEALKNWIKQNPKY----KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200

Query: 232 TEALNINEELIEALVQ--RGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
            EA + N ++I+  +Q   G    L+ ++  A++   +A    P+D
Sbjct: 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 36/251 (14%), Positives = 66/251 (26%), Gaps = 72/251 (28%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
             H  +A + L   I+ +P       ++            R S +  + S L   +  + 
Sbjct: 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLT----RRMSKSPVDSSVLEGVKELYL 201

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A     +G+   P                                              
Sbjct: 202 EAAHQ--NGDMIDPDLQ------------------------------------------- 216

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
              L      G  ++   + + A   F   L + PE       +  L   L         
Sbjct: 217 -TGL------GVLFHLSGEFNRAIDAFNAALTVRPEDYS---LWNRLGATLAN------- 259

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
               +   AVE +  AL + P          LG+    + LG  ++A+S+   AL++  +
Sbjct: 260 --GDRSEEAVEAYTRALEIQPGF--IRSRYNLGI--SCINLGAYREAVSNFLTALSLQRK 313

Query: 241 LIEALVQRGEA 251
                     A
Sbjct: 314 SRNQQQVPHPA 324

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 84.1 bits (208), Expect = 1e-17
 Identities = 49/341 (14%), Positives = 96/341 (28%), Gaps = 52/341 (15%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS 61
           K    A   L          +   + RG V   L         A++   + L   +    
Sbjct: 181 KDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDR----AKECYKEALMVDAKCYE 235

Query: 62  ALKLYDSGEYTKPLEYIDKVV-LVFSPACS------KAKLLKVKLLLAAKDYASAISETG 114
           A     S       E  D V+ L +S          ++  +      + +D      +  
Sbjct: 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295

Query: 115 YLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE--------------L 160
             +   E + + LL +    +  +          K L +DP + +               
Sbjct: 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355

Query: 161 KKAYFALKNLLK-KTKSAE--DNV-----SKGKLRVAVEDFKAALALDPNHTAHNVHLYL 212
            K Y    +L+    + A     V        K+  A   F  +  +DP        +  
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG--PAWIGF 413

Query: 213 GLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272
                    G    A+S+ T A  + +      +  G   +   +   A E L+S+    
Sbjct: 414 AH--SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 273 PQD--------------MNIREALMRAEKALKMSKRKDWYK 299
             D               +++ A+   + AL + K+    +
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 37/294 (12%), Positives = 76/294 (25%), Gaps = 63/294 (21%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
               ++     N  ++  P  +  +   G     + ++      A +  S+       F 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE----ARRYFSKSSTMDPQFG 407

Query: 61  SA-----LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            A           GE+ +                            A   Y +A      
Sbjct: 408 PAWIGFAHSFAIEGEHDQ----------------------------AISAYTTAA----- 434

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
             +  +      L  G  +  L +  +A  + Q    L             L  +     
Sbjct: 435 --RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL---LLNELGVVAFN-- 487

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTA---HNVHLYLGLCKVLVKLGRGKDALSSCT 232
                  K  ++ A+  F+ AL L     +        +  L     KL     A+ +  
Sbjct: 488 -------KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

Query: 233 EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM----NIREAL 282
           + L ++              L  +    A+  L  +   SP ++     ++ AL
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 53/280 (18%)

Query: 45  AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK 104
            EK L         F  A     +G+Y +    + K  L      S  + L    L+   
Sbjct: 107 GEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLY 164

Query: 105 DYASAISETG--------------YLLKEDENNLEALLH--RGRAYYYLADHDVAQRHFQ 148
           D+  A++  G               L+++    LEA +   RG+ Y  L++ D A+  ++
Sbjct: 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK 224

Query: 149 KGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT---- 204
           + L +D +  E                 A D +    L  A E++   L L+ +      
Sbjct: 225 EALMVDAKCYE-----------------AFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267

Query: 205 AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVED 264
           A  +     L                   ++N  E+  + L+ + +   +   +   +  
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327

Query: 265 LKSAAQQSPQD---MNIR-----------EALMRAEKALK 290
                +  P +     +            +  + +   + 
Sbjct: 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 42/260 (16%), Positives = 71/260 (27%), Gaps = 18/260 (6%)

Query: 101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160
           L  + Y  A      +L    N  +A     + Y    D+  A+    K    +      
Sbjct: 95  LMQQQYKCAAFVGEKVLDITGNPNDAFWL-AQVYCCTGDYARAKCLLTKEDLYNRS---S 150

Query: 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVH--LYLGLCKVL 218
              Y A   L+K           G+     +D K A  L        +   +     +V 
Sbjct: 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210

Query: 219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI 278
             L     A     EAL ++ +  EA  Q     LLT D E  +    + +  S +D   
Sbjct: 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270

Query: 279 REALMRAEKALKMSKRKDWYKILGVSKTASI-SEIKRAYKKLALQWHPDKNVDNREEAEN 337
             +L    K  K S   +  +      + +   +        A             +   
Sbjct: 271 LRSLYML-KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF---VRSRFIDVLA 326

Query: 338 KFREI-------AAAYEVLG 350
              +I          Y +  
Sbjct: 327 ITTKILEIDPYNLDVYPLHL 346

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 45/270 (16%), Positives = 84/270 (31%), Gaps = 43/270 (15%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
              A+     A++ DP   EA+ + G+   +  +       A   L + L+ +    +AL
Sbjct: 80  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL----AISALRRCLELKPDNQTAL 135

Query: 64  K-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
                   +     +  E +                L+         YA  ++       
Sbjct: 136 MALAVSFTNESLQRQACEILRDW-------------LRYT-----PAYAHLVTPAE--EG 175

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
                L        +    +     +  F   +RLDP   +       L  L        
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID-PDVQCGLGVLFNL----- 229

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
                G+   AV+ F AAL++ PN   + +   LG    L    + ++A+++   AL + 
Sbjct: 230 ----SGEYDKAVDCFTAALSVRPND--YLLWNKLGA--TLANGNQSEEAVAAYRRALELQ 281

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
              I +    G + +       AVE    A
Sbjct: 282 PGYIRSRYNLGISCINLGAHREAVEHFLEA 311

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 80.5 bits (199), Expect = 6e-17
 Identities = 38/249 (15%), Positives = 72/249 (28%), Gaps = 33/249 (13%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
              A+  L   +E  P    A              +     A + L   L+    +   +
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ----ACEILRDWLRYTPAYAHLV 169

Query: 64  KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN 123
              + G     L    ++          + L     L   + + +A+      L     +
Sbjct: 170 TPAEEGAGGAGLGPSKRI--------LGSLLSDSLFLEVKELFLAAVR-----LDPTSID 216

Query: 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK 183
            +     G  +    ++D A   F   L + P        +  L   L            
Sbjct: 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---LWNKLGATLAN---------G 264

Query: 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243
            +   AV  ++ AL L P +        LG+    + LG  ++A+    EALN+  +   
Sbjct: 265 NQSEEAVAAYRRALELQPGY--IRSRYNLGI--SCINLGAHREAVEHFLEALNMQRKSRG 320

Query: 244 ALVQRGEAK 252
              + G   
Sbjct: 321 PRGEGGAMS 329

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 45/280 (16%)

Query: 10  DLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-AQSTFDSALKLYDS 68
           +   A  A  +  + +    + L ++     R++ A   LS       +T+D   +  + 
Sbjct: 2   EFERAKSAIESDVDFWDKLQAELEEM---AKRDAEAHPWLSDYDDLTSATYDKGYQFEEE 58

Query: 69  GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALL 128
                  +  ++ +                  L   D  +A+      +++D  ++EA  
Sbjct: 59  NPLRDHPQPFEEGLR----------------RLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102

Query: 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRV 188
           + G          +A    ++ L L P++     A  AL               +   R 
Sbjct: 103 YLGTTQAENEQELLAISALRRCLELKPDNQT---ALMALAVSFTN---------ESLQRQ 150

Query: 189 AVEDFKAALALDPNH-----------TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237
           A E  +  L   P +               +     +   L+      +       A+ +
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210

Query: 238 NEELIEALVQ--RGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
           +   I+  VQ   G    L+ +++ AV+   +A    P D
Sbjct: 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 28/218 (12%), Positives = 65/218 (29%), Gaps = 25/218 (11%)

Query: 147 FQKGLRLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205
           F++         +   K    L+ + K+   A   +S     +    +      +  +  
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSD-YDDLTSATYDKGYQFEEENPL 61

Query: 206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDL 265
            +           ++ G   +A+     A+  + + +EA    G  +   E    A+  L
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 266 KSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTA--SISEIKRAYKKLALQW 323
           +   +  P   + + ALM                 L VS T      +     +   L++
Sbjct: 122 RRCLELKP---DNQTALMA----------------LAVSFTNESLQRQACEILRD-WLRY 161

Query: 324 HPD-KNVDNREEAENKFREIAAAYEVLGDDDKRARYDR 360
            P   ++    E       +  +  +LG     + +  
Sbjct: 162 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 199

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 39/257 (15%), Positives = 75/257 (29%), Gaps = 60/257 (23%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              Y +A +    AIE +   +  Y +  ++L  +  ++     A     + L+  S+  
Sbjct: 36  FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELER----ALAFYDKALELDSSAA 91

Query: 61  SA-----LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
           +A             Y +                            A   +  A+     
Sbjct: 92  TAYYGAGNVYVVKEMYKE----------------------------AKDMFEKAL----- 118

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
             +    N +     G     L    +A  + Q+ + L+   +E   A F     L    
Sbjct: 119 --RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE---ARFQFGMCLAN-- 171

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                  +G L  A+  F A    DP H   +     G+          + AL    +A+
Sbjct: 172 -------EGMLDEALSQFAAVTEQDPGH--ADAFYNAGV--TYAYKENREKALEMLDKAI 220

Query: 236 NINEELIEALVQRGEAK 252
           +I  + + AL  +    
Sbjct: 221 DIQPDHMLALHAKKLLG 237

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 76.0 bits (188), Expect = 6e-16
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
            DY  A       ++E++ +    ++       + + + A   + K L LD   +    A
Sbjct: 37  GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT---A 93

Query: 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223
           Y+   N+            K   + A + F+ AL     +   ++   LG   VLVKL +
Sbjct: 94  YYGAGNVYVV---------KEMYKEAKDMFEKALRAGMEN--GDLFYMLGT--VLVKLEQ 140

Query: 224 GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM------- 276
            K AL     A+ +NE   EA  Q G         + A+    +  +Q P          
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG 200

Query: 277 NIREALMRAEKALKM 291
                    EKAL+M
Sbjct: 201 VTYAYKENREKALEM 215

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 76.0 bits (188), Expect = 6e-16
 Identities = 42/273 (15%), Positives = 75/273 (27%), Gaps = 63/273 (23%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
             H+  +   +                RGS              A +  ++ ++      
Sbjct: 5   HHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDY-------EKAAEAFTKAIEENKEDA 57

Query: 61  SA-----LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
                    L    E  +                            A   Y  A+     
Sbjct: 58  IPYINFANLLSSVNELER----------------------------ALAFYDKAL----- 84

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
             + D +   A    G  Y     +  A+  F+K LR   E+ +    ++ L  +L K  
Sbjct: 85  --ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD---LFYMLGTVLVK-- 137

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                    + ++A+   + A+ L+ N          G+C  L   G   +ALS      
Sbjct: 138 -------LEQPKLALPYLQRAVELNEND--TEARFQFGMC--LANEGMLDEALSQFAAVT 186

Query: 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
             +    +A    G      E+ E A+E L  A
Sbjct: 187 EQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 31/223 (13%), Positives = 50/223 (22%), Gaps = 84/223 (37%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            + Y EA D    A+ A     + ++  G+VL               +L Q   A     
Sbjct: 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVL--------------VKLEQPKLALPYLQ 149

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A++L                                       +               
Sbjct: 150 RAVEL-------NE------------------------------NDT------------- 159

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
               EA    G         D A   F      DP H++   A++               
Sbjct: 160 ----EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD---AFYNAGVTYAY------- 205

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223
             K     A+E    A+ + P+H          L  +      
Sbjct: 206 --KENREKALEMLDKAIDIQPDH--MLALHAKKL--LGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 11/87 (12%), Positives = 24/87 (27%)

Query: 189 AVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR 248
           +      +  L P  +               + G  + A  + T+A+  N+E     +  
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63

Query: 249 GEAKLLTEDWEGAVEDLKSAAQQSPQD 275
                   + E A+     A +     
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSA 90

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 74.2 bits (182), Expect = 7e-17
 Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 286 EKALKMSKRKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIA 343
           ++ L  + ++   ++L + +        +++AYK+ +L  HPDK            +E+ 
Sbjct: 2   DRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELN 56

Query: 344 AAYEVLGDDDKRARYDRG 361
           + +     +    R + G
Sbjct: 57  SLWGTFKTEVYNLRMNLG 74

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 77.6 bits (192), Expect = 9e-17
 Identities = 35/270 (12%), Positives = 64/270 (23%), Gaps = 74/270 (27%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
           Y  AL     A++ +P   EA +                     +L  +  A     + +
Sbjct: 21  YDAALTLFERALKENPQDPEALYWLARTQ--------------LKLGLVNPALENGKTLV 66

Query: 64  KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN 123
                     P                               Y                 
Sbjct: 67  AR-------TP------------------------------RYLGGYMVLSEAYVALYRQ 89

Query: 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK 183
            E               + A    +   R++P ++     +     +             
Sbjct: 90  AEDRER------GKGYLEQALSVLKDAERVNPRYAP---LHLQRGLVYAL---------L 131

Query: 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243
           G+   A    K ALAL+      +    L    + + +GR  +AL+   +AL    + ++
Sbjct: 132 GERDKAEASLKQALALEDTPEIRS---ALAE--LYLSMGRLDEALAQYAKALEQAPKDLD 186

Query: 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273
             V+   A LL    E A            
Sbjct: 187 LRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
           +   +  L  G   Y L  +D A   F++ L+ +P+  E   A + L     K       
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE---ALYWLARTQLK------- 51

Query: 181 VSKGKLRVAVEDFKAALALDPNHT-AHN------VHLYLGLCKVLVKLGRGKDALSSCTE 233
              G +  A+E+ K  +A  P +   +       V LY          G  + ALS   +
Sbjct: 52  --LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109

Query: 234 ALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
           A  +N       +QRG    L  + + A   LK A
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 37/238 (15%), Positives = 64/238 (26%), Gaps = 74/238 (31%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           +   + AL++  T +   P     Y         L R        E+    L QA S   
Sbjct: 52  LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAE---DRERGKGYLEQALSVLK 108

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A ++        P                               YA             
Sbjct: 109 DAERV-------NP------------------------------RYA------------- 118

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
                  L RG  Y  L + D A+   ++ L L+       +   AL  L          
Sbjct: 119 ----PLHLQRGLVYALLGERDKAEASLKQALALEDTP----EIRSALAELYLS------- 163

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
              G+L  A+  +  AL   P     ++ +       L+  G+ ++A  +     + +
Sbjct: 164 --MGRLDEALAQYAKALEQAPKD--LDLRVRYAS--ALLLKGKAEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 27/199 (13%), Positives = 39/199 (19%), Gaps = 81/199 (40%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
             +AL  L  A   +P  +  +  RG V   L                        D A 
Sbjct: 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE---------------------RDKAE 138

Query: 64  KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN 123
                                      +A        LA +D                  
Sbjct: 139 ASLK-----------------------QA--------LALEDTP---------------- 151

Query: 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK 183
            E        Y  +   D A   + K L   P+  +         + L           K
Sbjct: 152 -EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD---LRVRYASALLL---------K 198

Query: 184 GKLRVAVEDFKAALALDPN 202
           GK   A            +
Sbjct: 199 GKAEEAARAAALEHHHHHH 217

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 33/217 (15%)

Query: 92  AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALL----------------HRGRAYY 135
             L KV   + A     A+S     +  + +  E                       AY 
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKA 195
              ++D A   +++ L+  P + +      A   +            +G+ + A+  ++ 
Sbjct: 66  KNRNYDKAYLFYKELLQKAPNNVD---CLEACAEMQVC---------RGQEKDALRMYEK 113

Query: 196 ALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT 255
            L L+ ++     +++LG     +   + K  L +  + L+   ++  A  + G +KL T
Sbjct: 114 ILQLEADNL--AANIFLGNY-YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFT 170

Query: 256 EDWEGAVEDLKSAAQQSPQD--MNIREALMRAEKALK 290
             +E A   L+    + P        + ++R EK + 
Sbjct: 171 TRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVN 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.4 bits (170), Expect = 5e-14
 Identities = 29/238 (12%), Positives = 56/238 (23%), Gaps = 67/238 (28%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
                +A+      I  +   +E Y+            K        EL+   +    +D
Sbjct: 17  AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLAT-----ELALAYKKNRNYD 71

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A   Y                        +                         L++ 
Sbjct: 72  KAYLFYK-----------------------EL------------------------LQKA 84

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
            NN++ L               A R ++K L+L+ ++     A   L N    T   E  
Sbjct: 85  PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA---ANIFLGNYYYLTAEQEKK 141

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
                    +E     L+          +         +   R + A +S  + +   
Sbjct: 142 --------KLETDYKKLSSPTK----MQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 15/177 (8%)

Query: 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV- 181
           +++ +L +  A      +  A  +F++ + L+ + +E    Y+          S++    
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---MYYWTNVDKNSEISSKLATE 59

Query: 182 ------SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                        A   +K  L   PN    NV       ++ V  G+ KDAL    + L
Sbjct: 60  LALAYKKNRNYDKAYLFYKELLQKAPN----NVDCLEACAEMQVCRGQEKDALRMYEKIL 115

Query: 236 NINEELIEALVQRGEA-KLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291
            +  + + A +  G    L  E  +  +E          +    R     ++     
Sbjct: 116 QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTR 172

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 44/284 (15%), Positives = 75/284 (26%), Gaps = 66/284 (23%)

Query: 3   HYSEALDDLNTAIE----ADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQST 58
                L  +   +      D   ++  + RG +   L         A  + SQ L  +  
Sbjct: 20  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL----ARNDFSQALAIRPD 75

Query: 59  FDSA-----LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISET 113
                    + L  +G +                              A + + S +   
Sbjct: 76  MPEVFNYLGIYLTQAGNFDA----------------------------AYEAFDSVL--- 104

Query: 114 GYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK 173
               + D     A L+RG A YY     +AQ       + DP           L    +K
Sbjct: 105 ----ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF---RSLWLYLAEQK 157

Query: 174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--NVHLYLGLCKVLVKLGRGKDALSSC 231
               +          A E  K               V  YLG    + +    +   +  
Sbjct: 158 LDEKQ----------AKEVLKQHFEKSDKEQWGWNIVEFYLG---NISEQTLMERLKADA 204

Query: 232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
           T+  ++ E L E     G+  L   D + A    K A   +  +
Sbjct: 205 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 184 GKLRVAVEDFKAALA----LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239
            +  V +   +  LA     D       +    G+  +   LG    A +  ++AL I  
Sbjct: 19  LQQEVILARMEQILASRALTDDER--AQLLYERGV--LYDSLGLRALARNDFSQALAIRP 74

Query: 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
           ++ E     G       +++ A E   S 
Sbjct: 75  DMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159
            +  +DY  A +     LK D  N  A L R   Y YL  +D AQ  F++ L + P+ +E
Sbjct: 18  YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE 77

Query: 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV 219
                      L             +   ++  F  ALA     T +  +L  G+C    
Sbjct: 78  ---INNNYGWFLCG--------RLNRPAESMAYFDKALADPTYPTPYIANLNKGIC--SA 124

Query: 220 KLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
           K G+   A +    +L    +   A  +    K+L      A    K    +    
Sbjct: 125 KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 33/230 (14%), Positives = 57/230 (24%), Gaps = 46/230 (20%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            + Y +A   +  A+++DP    A+  R  +               + L    +AQ +F 
Sbjct: 21  GQDYRQATASIEDALKSDPKNELAWLVRAEIY--------------QYLKVNDKAQESFR 66

Query: 61  SALKL----------------YDSGEYTKPLEYIDKVV-LVFSPACSKAKLLKVKLLLAA 103
            AL +                       + + Y DK +     P    A L K       
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ 126

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
             +  A +     L        A     R          A  +F+K              
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA---D 183

Query: 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH-TAHNVHLYL 212
              L   +              L  A   ++    L  N   +  +   L
Sbjct: 184 DLLLGWKI-----------AKALGNAQAAYEYEAQLQANFPYSEELQTVL 222

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 38/245 (15%), Positives = 64/245 (26%), Gaps = 84/245 (34%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              YS+A+  L    +AD    +   H G                  +   + +     +
Sbjct: 21  AGRYSQAVMLLEQVYDADAFDVDVALHLGIAY--------------VKTGAVDRGTELLE 66

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            +L          P                              D               
Sbjct: 67  RSLAD-------AP------------------------------DNV------------- 76

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
               +     G  Y  +  +D+A     K    +P +       F L   L         
Sbjct: 77  ----KVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN---VRFRLGVALDN------- 122

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
              G+   A++ FK AL L PN     VH  +       ++GR ++AL    +A  ++E 
Sbjct: 123 --LGRFDEAIDSFKIALGLRPNE--GKVHRAIAF--SYEQMGRHEEALPHFKKANELDEG 176

Query: 241 LIEAL 245
               L
Sbjct: 177 ASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 65.6 bits (161), Expect = 8e-13
 Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 16/147 (10%)

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
            +++  LH G AY      D      ++ L   P++ +       L     +        
Sbjct: 40  FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---VATVLGLTYVQ-------- 88

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
              K  +AV         +P +   NV   LG+   L  LGR  +A+ S   AL +    
Sbjct: 89  -VQKYDLAVPLLIKVAEANPIN--FNVRFRLGV--ALDNLGRFDEAIDSFKIALGLRPNE 143

Query: 242 IEALVQRGEAKLLTEDWEGAVEDLKSA 268
            +       +       E A+   K A
Sbjct: 144 GKVHRAIAFSYEQMGRHEEALPHFKKA 170

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVA 189
           +G ++     +  A    ++    D    +       L     K          G +   
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVD---VALHLGIAYVK---------TGAVDRG 61

Query: 190 VEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG 249
            E  + +LA  P++    V   LGL    V++ +   A+    +    N        + G
Sbjct: 62  TELLERSLADAPDN--VKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117

Query: 250 EAKLLTEDWEGAVEDLKSA 268
            A      ++ A++  K A
Sbjct: 118 VALDNLGRFDEAIDSFKIA 136

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 48.2 bits (116), Expect = 8e-07
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 13/113 (11%)

Query: 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG 222
            Y        K          G+   AV   +     D      +V L+LG+    VK G
Sbjct: 10  YYRDKGISHAK---------AGRYSQAVMLLEQVYDADAFD--VDVALHLGI--AYVKTG 56

Query: 223 RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
                      +L    + ++     G   +  + ++ AV  L   A+ +P +
Sbjct: 57  AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 42/301 (13%), Positives = 85/301 (28%), Gaps = 28/301 (9%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              +       +  +E DP  +         L +L +             +L+    +  
Sbjct: 35  NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANE----LFYLSHKLVDLYPSNP 90

Query: 61  SA-----LKLYDSGEYTKP-LEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETG 114
            +           G   +    Y+ K   +       A +          ++  A++   
Sbjct: 91  VSWFAVGCYYLMVGHKNEHARRYLSKATTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYF 149

Query: 115 YLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174
              +  +     +L+ G  Y    +  +A+R F + L + PE          +  +  + 
Sbjct: 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF---VMHEVGVVAFQ- 205

Query: 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHT-----AHNVHLYLGLCKVLVKLGRGKDALS 229
                    G+ + A + F  AL                 L   L  V  KL +  +AL 
Sbjct: 206 --------NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 230 SCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289
              +AL +  +        G    L  ++E AV+   +A      D      L    +  
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317

Query: 290 K 290
            
Sbjct: 318 I 318

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 38/235 (16%), Positives = 71/235 (30%), Gaps = 33/235 (14%)

Query: 69  GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALL 128
           G Y KP E +    +          +   +      D+      T  ++++D  +   L 
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL----KNLLKKTKSAEDNVSK- 183
                   L   +       K + L P +     ++FA+      +  K + A   +SK 
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPV---SWFAVGCYYLMVGHKNEHARRYLSKA 117

Query: 184 ---------------------GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG 222
                                 +   A+  +  A  L      H   LY+GL        
Sbjct: 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC--HLPMLYIGL--EYGLTN 173

Query: 223 RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277
             K A    ++AL+I  E    + + G       +W+ A +    A ++     N
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 31/235 (13%), Positives = 60/235 (25%), Gaps = 51/235 (21%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              + +A+    TA +          + G         K     AE+  SQ L       
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL----AERFFSQALSIAPEDP 193

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
             +       + +GE+    ++                             A    +   
Sbjct: 194 FVMHEVGVVAFQNGEWKTAEKWFLD--------------------------ALEKIKAIG 227

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
                +     L + G     L  +  A  + ++ L L P+++     Y A+  +     
Sbjct: 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS---TYSAIGYIHSL-- 282

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS 230
                   G    AV+ F  AL L  +    +      L   +       +A   
Sbjct: 283 -------MGNFENAVDYFHTALGLRRD----DTFSVTMLGHCIEMYIGDSEAYIG 326

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 76.6 bits (188), Expect = 2e-15
 Identities = 29/270 (10%), Positives = 74/270 (27%), Gaps = 40/270 (14%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS 61
           +   + L  +   + +    ++A   +G  L         +  AE  LS+ ++ +     
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPD---YSPEAEVLLSKAVKLEPELVE 138

Query: 62  ALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYL 116
           A        +  G+ T                            L       ++     +
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGA-------------------LTHCKNKVSLQNLSMV 179

Query: 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS 176
           L++        L       +      + R  +  +++D        +++ L N       
Sbjct: 180 LRQ--------LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR---SWYILGNAYLSLYF 228

Query: 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236
                +    + A+  +  A  +D    + N  L+L    +        +AL   ++A  
Sbjct: 229 NTGQ-NPKISQQALSAYAQAEKVDRKA-SSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286

Query: 237 INEELIEALVQRGEAKLLTEDWEGAVEDLK 266
           ++    E   +  +           +E   
Sbjct: 287 LDPAWPEPQQREQQLLEFLSRLTSLLESKG 316

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 98  KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDV-AQRHFQKGLRLDPE 156
           K     ++    + +   +L   +   +AL+ +G+A     D+   A+    K ++L+PE
Sbjct: 76  KQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE 135

Query: 157 HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN----VHLYL 212
             E   A+  L  +  K         KG +  A   F  AL    N  +      V   L
Sbjct: 136 LVE---AWNQLGEVYWK---------KGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQL 183

Query: 213 GLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEA 251
                        D++     A+ ++     +    G A
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 19/188 (10%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
               + A    + A+        +  +   VLRQL          ++    ++ +     
Sbjct: 150 KGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT-----DSGDEHSRHVMDSVRQAK 203

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A+++ D  +      +        S   +  +  K     A   YA A      + ++ 
Sbjct: 204 LAVQM-DVLDGR---SWYILGNAYLSLYFNTGQNPK-ISQQALSAYAQAEK----VDRKA 254

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
            +N +  L+R   + Y   +  A   F +   LDP   E        + LL+        
Sbjct: 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE---PQQREQQLLEFLSRLTSL 311

Query: 181 V-SKGKLR 187
           + SKGK +
Sbjct: 312 LESKGKTK 319

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 7/116 (6%)

Query: 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL 218
             + +YF   ++    +  +D   + ++   ++  +  L              +   K L
Sbjct: 59  CFRDSYFETHSVEDAGRKQQD--VQEEMEKTLQQMEEVLGSAQVE----AQALMLKGKAL 112

Query: 219 VKLGR-GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273
                   +A    ++A+ +  EL+EA  Q GE      D   A      A     
Sbjct: 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR----VKARNSVAEKELSQLLQAQ 56
            + Y EAL+  + A   DP   E       +L  L R    ++++     K+L  +L + 
Sbjct: 271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSL 330

Query: 57  STFDSALKLYDSGEYTKP 74
                 L     G Y   
Sbjct: 331 RPAH--LGPCGDGRYQSA 346

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 26/197 (13%), Positives = 62/197 (31%), Gaps = 17/197 (8%)

Query: 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159
            L   +   A       L+ D ++ +A       +    +  +A   ++K L  D  ++ 
Sbjct: 47  YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR 106

Query: 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV 219
                      L +         + +   A +    A           V   LGL    +
Sbjct: 107 ---VLNNYGGFLYE---------QKRYEEAYQRLLEASQDTLYPERSRVFENLGLV--SL 152

Query: 220 KLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279
           ++ +   A     ++L +N       ++  +      ++  A +     AQ   Q+    
Sbjct: 153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN---A 209

Query: 280 EALMRAEKALKMSKRKD 296
            +L+   +  K+ + +D
Sbjct: 210 RSLLLGIRLAKVFEDRD 226

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 58/249 (23%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
             +  +A   L  A+E DP+ ++A+     V +     K     A++E  + L + S   
Sbjct: 50  RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKL----ADEEYRKALASDSRNA 105

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
             L      LY+   Y +                            A +    A  +T Y
Sbjct: 106 RVLNNYGGFLYEQKRYEE----------------------------AYQRLLEASQDTLY 137

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
                        + G     +     A+ +F+K LRL+            + +LL K  
Sbjct: 138 -----PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS---VALEMADLLYK-- 187

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                  + +   A + +         +      L LG+ ++         A S   +  
Sbjct: 188 -------EREYVPARQYYDLFAQGGGQNAR---SLLLGI-RLAKVFEDRDTAASYGLQLK 236

Query: 236 NINEELIEA 244
            +    +E 
Sbjct: 237 RLYPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 12/166 (7%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA--QSTFDS 61
              A ++   A+ +D   +    + G  L +  R +     A + L +  Q         
Sbjct: 87  PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE----AYQRLLEASQDTLYPERSR 142

Query: 62  ALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYL 116
             +          +  +  EY +K  L  +       L    LL   ++Y  A       
Sbjct: 143 VFENLGLVSLQMKKPAQAKEYFEKS-LRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201

Query: 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162
            +    N  +LL   R      D D A  +  +  RL P   E ++
Sbjct: 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 75.7 bits (186), Expect = 5e-15
 Identities = 45/299 (15%), Positives = 84/299 (28%), Gaps = 47/299 (15%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
                 A+D L  AI  +P            L ++          EK + + L+      
Sbjct: 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSP----------ACSKAKLLKVKLLL---- 101
             L+          E  K +E + K  L + P           C +AK+ +V  L     
Sbjct: 248 DVLRSAAKFYRRKDEPDKAIELLKK-ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 102 -----AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE 156
                  +    A++      + ++N           +     ++ A+ +FQK    +  
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 157 HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK 216
               +  +    N        ED         A+  F   + ++         +   L K
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDK--------AIHHFIEGVKINQKSREKE-KMKDKLQK 417

Query: 217 VLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
           +                 L+ N    EAL      + L E  + A ED +   +     
Sbjct: 418 IAKM-------------RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 50/314 (15%), Positives = 98/314 (31%), Gaps = 46/314 (14%)

Query: 62  ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-- 119
           A   +  G+    LE + K   +       A   +++ L+   +YA      G L     
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQQE--HADQAEIRSLVTWGNYAWVYYHMGRLSDVQI 115

Query: 120 ----------------DENNLEALLHRGRAYYYLA--DHDVAQRHFQKGLRLDPEHSELK 161
                              + E     G          ++ A+  F+K L   P++ E  
Sbjct: 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE-- 173

Query: 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL 221
                L     +  +          + A++  + A+ L+P++    V L L L K+  + 
Sbjct: 174 -FTSGLAIASYRLDN------WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226

Query: 222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRE- 280
               +      EAL     + + L    +     ++ + A+E LK A +  P +  +   
Sbjct: 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286

Query: 281 -ALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD------------K 327
                  K  ++   ++            I       KK A + + +             
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK-ADEANDNLFRVCSILASLHA 345

Query: 328 NVDNREEAENKFRE 341
             D  EEAE  F++
Sbjct: 346 LADQYEEAEYYFQK 359

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 33/302 (10%), Positives = 72/302 (23%), Gaps = 44/302 (14%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
                 A      A+E  P   E          +L                   A     
Sbjct: 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL-----------DNWPPSQNAIDPLR 199

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A++L                            L   K+    ++           L++ 
Sbjct: 200 QAIRLNPD----------------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL--------KKAYFALKNLLK 172
               + L    + Y    + D A    +K L   P ++ L        +   F + NL +
Sbjct: 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE 303

Query: 173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232
                +  + +  +  AV   K A   + N       +   L  +     + ++A     
Sbjct: 304 NGMYGKRKLLE-LIGHAVAHLKKADEANDNL----FRVCSILASLHALADQYEEAEYYFQ 358

Query: 233 EALNINEELIEALVQRGEAKLLTEDWEG----AVEDLKSAAQQSPQDMNIREALMRAEKA 288
           +  +     +   +                  A+       + + +     +   + +K 
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

Query: 289 LK 290
            K
Sbjct: 419 AK 420

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 34/226 (15%), Positives = 67/226 (29%), Gaps = 31/226 (13%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
                +A++ L  A+E  P  +  +   G   R   +V    ++ E  +    +      
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA--KVFQVMNLRENGMYGKRKLLELIG 317

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A+                K     +    +   +   L   A  Y  A         ++
Sbjct: 318 HAVAHL-------------KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364

Query: 121 ENNLEA---LLHRGRA-YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS 176
              +      L  G    Y +   D A  HF +G++++ +  E +K    L+ + K   S
Sbjct: 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLS 424

Query: 177 AEDNVS------------KGKLRVAVEDFKAALALDPNHTAHNVHL 210
                S              K++ A ED +  L       + +   
Sbjct: 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 76.0 bits (186), Expect = 5e-15
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 16/181 (8%)

Query: 99  LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS 158
           +     +   A+      L+       A  +             A  H+++ +R+ P  +
Sbjct: 18  IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77

Query: 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL 218
           +   AY  + N LK+            ++ A++ +  A+ ++P         +  L  + 
Sbjct: 78  D---AYSNMGNTLKEM---------QDVQGALQCYTRAIQINPAFADA----HSNLASIH 121

Query: 219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI 278
              G   +A++S   AL +  +  +A         +  DW    E +K         +  
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

Query: 279 R 279
            
Sbjct: 182 N 182

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 73.3 bits (179), Expect = 4e-14
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 34/218 (15%)

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
            + ++L +         + + A R ++K L + PE +    A+  L ++L++        
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---AHSNLASVLQQ-------- 55

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
            +GKL+ A+  +K A+ + P         Y  +   L ++   + AL   T A+ IN   
Sbjct: 56  -QGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110

Query: 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKIL 301
            +A          + +   A+   ++A +  P   +  +A       L++      Y   
Sbjct: 111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKP---DFPDAYCNLAHCLQIVCDWTDY--- 164

Query: 302 GVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKF 339
                          KK  +    D+   NR  + +  
Sbjct: 165 -----------DERMKK-LVSIVADQLEKNRLPSVHPH 190

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 50.2 bits (119), Expect = 8e-07
 Identities = 24/172 (13%), Positives = 52/172 (30%), Gaps = 34/172 (19%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
                EAL     AI   PT ++AY + G+ L+++                +  A   + 
Sbjct: 56  QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD--------------VQGALQCYT 101

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A+++                    +PA + A      +   + +   AI+     LK  
Sbjct: 102 RAIQI--------------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172
            +  +A  +       + D        +K + +  +  E  +      +   
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSM 193

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 75.3 bits (185), Expect = 8e-15
 Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 16/161 (9%)

Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
           D    + +    ++    +  A L    A   + D    +   Q+GL L P H E     
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE----- 58

Query: 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224
            A+  L           ++ +   A    + A    P H      + L L   L   G+ 
Sbjct: 59  -AVARL------GRVRWTQQRHAEAAVLLQQASDAAPEHPG----IALWLGHALEDAGQA 107

Query: 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDL 265
           + A ++ T A  +  E      Q    +    DW       
Sbjct: 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 69.9 bits (171), Expect = 4e-13
 Identities = 36/219 (16%), Positives = 63/219 (28%), Gaps = 19/219 (8%)

Query: 139 DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198
           D        +  +R  P+      A+  L +              G         +  LA
Sbjct: 4   DGPRELLQLRAAVRHRPQDFV---AWLMLADAELGM---------GDTTAGEMAVQRGLA 51

Query: 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW 258
           L P H          L +V     R  +A     +A +   E     +  G A       
Sbjct: 52  LHPGH----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107

Query: 259 EGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKK 318
           E A      A Q  P++  I   L+      +         +L     A++++   A + 
Sbjct: 108 EAAAAAYTRAHQLLPEEPYITAQLLN---WRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164

Query: 319 LALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRAR 357
            A         +    A  + + IAA+   L     R++
Sbjct: 165 FAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSK 203

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 23/194 (11%), Positives = 47/194 (24%), Gaps = 36/194 (18%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
               L  L  A+   P    A+         +                    +      L
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGM--------------GDTTAGEMAVQRGL 50

Query: 64  KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN 123
            L+                    P   +A     ++    + +A A             +
Sbjct: 51  ALH--------------------PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90

Query: 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK 183
               L  G A       + A   + +  +L PE   +       +  L   ++ +   + 
Sbjct: 91  PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA- 149

Query: 184 GKLRVAVEDFKAAL 197
            ++R AV     A+
Sbjct: 150 -QVRAAVAQGVGAV 162

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 18/121 (14%)

Query: 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243
                 +   +AA+   P         +L L    + +G       +    L ++    E
Sbjct: 3   ADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE 58

Query: 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD--------------MNIREALMRAEKAL 289
           A+ + G  +   +    A   L+ A+  +P+                    A     +A 
Sbjct: 59  AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118

Query: 290 K 290
           +
Sbjct: 119 Q 119

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 24/88 (27%), Positives = 48/88 (54%)

Query: 208 VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKS 267
           +   L +    +K+   + A+ SC EAL I+    +AL +R +     ++++ A+ DLK 
Sbjct: 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332

Query: 268 AAQQSPQDMNIREALMRAEKALKMSKRK 295
           A + +P+D  I+  L++ ++ +K  K K
Sbjct: 333 AQEIAPEDKAIQAELLKVKQKIKAQKDK 360

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 71  YTKPLEYIDKV-VLVFSPACSKAKLLKVKLLL--AA-----KDYASAISETGYLLKEDEN 122
           YTK L Y++           +K + + +  +L   A      D+  A+      L+ D +
Sbjct: 246 YTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305

Query: 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE----HSELKKAYFALKNLLKKTKSA 177
           N +AL  R + +  L ++D A    +K   + PE     +EL K    +K    K K+A
Sbjct: 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 364

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 70.3 bits (171), Expect = 2e-14
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 277 NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN--VDNREE 334
           NIR AL+     +  +    W  + G++   +  ++K+ Y+K  L  HPDK       + 
Sbjct: 101 NIR-ALLSTMHTVLWAGETKWKPV-GMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQY 158

Query: 335 AENKFREIAAAYEVLGDDDKRARY 358
           A+  F E+  A+    +  ++  Y
Sbjct: 159 AKMIFMELNDAWSEFENQGQKPLY 182

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 71.6 bits (175), Expect = 8e-14
 Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 39/227 (17%)

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
           E       +  +G  Y+    +  A   + K +                   L+      
Sbjct: 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-----------------LEMEYGLS 305

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
           +           ++ KA+ +           L L +C +  KL     A+  C +AL ++
Sbjct: 306 E-----------KESKASESF-----LLAAFLNLAMCYL--KLREYTKAVECCDKALGLD 347

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKD-- 296
               + L +RGEA+LL  ++E A  D +   + +PQ+   R  +   +K  K    +D  
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407

Query: 297 -WYKILG-VSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFRE 341
            +  +    ++  +  E  +A  K   +   ++   + +  E +  E
Sbjct: 408 IYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEKPE 454

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 67.8 bits (165), Expect = 2e-12
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 70  EYTKPLEYIDKVVLVFSPACSKAKLLKVKLLL--AA-----KDYASAISETGYLLKEDEN 122
           +Y K + +++    +       ++   +   L  A      ++Y  A+      L  D  
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349

Query: 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS 182
           N + L  RG A   + + + A+  F+K L ++P++   +      +   K+    +  + 
Sbjct: 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIY 409

Query: 183 KG 184
             
Sbjct: 410 AN 411

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 27/141 (19%), Positives = 41/141 (29%), Gaps = 16/141 (11%)

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
           L    E+ LE L   G   Y     D AQ+ FQ    LD   +     +  L    +   
Sbjct: 10  LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---YFLGLGACRQS-- 64

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
                   G    A++ +     +D N        +   C   ++LG    A S    A 
Sbjct: 65  -------LGLYEQALQSYSYGALMDINE--PRFPFHAAEC--HLQLGDLDGAESGFYSAR 113

Query: 236 NINEELIEALVQRGEAKLLTE 256
            +             A  + E
Sbjct: 114 ALAAAQPAHEALAARAGAMLE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 29/149 (19%), Positives = 44/149 (29%), Gaps = 16/149 (10%)

Query: 147 FQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH 206
                 L  +  E     +AL     +          GK   A + F+A   LD      
Sbjct: 7   LAMLRGLSEDTLE---QLYALGFNQYQ---------AGKWDDAQKIFQALCMLDHY---- 50

Query: 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLK 266
           +   +LGL      LG  + AL S +    ++           E  L   D +GA     
Sbjct: 51  DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110

Query: 267 SAAQQSPQDMNIREALMRAEKALKMSKRK 295
           SA   +           RA   L+    +
Sbjct: 111 SARALAAAQPAHEALAARAGAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 1/126 (0%)

Query: 54  QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISET 113
             +  +      Y +G++    +    + ++     ++  L       +   Y  A+   
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCML-DHYDARYFLGLGACRQSLGLYEQALQSY 75

Query: 114 GYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK 173
            Y    D N      H    +  L D D A+  F     L       +        +L+ 
Sbjct: 76  SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135

Query: 174 TKSAED 179
             + +D
Sbjct: 136 VTARKD 141

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 296 DWYKILGVSKTASI--SEIKRAYKKLALQWHPDKNVDN----REEAENKFREIAAAYEVL 349
           D++ + G+     +    +   ++ L  Q+HPDK        +  A  +   I  A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 350 GDDDKRARYDR 360
                RA Y  
Sbjct: 62  RHPLMRAEYLL 72

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 183 KGKLRVAVEDFKAALALDPNHTAHN-----------VHLYLGLCKVLVKLGRGKDALSSC 231
           +GK + A+  +K  ++     ++ +           +  +L L    +KL     A+ SC
Sbjct: 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219

Query: 232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291
            +AL ++    + L +RGEA L   D+E A  D +   Q  P +   +  L   ++ ++ 
Sbjct: 220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

Query: 292 SKRKD---WYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAA 345
              ++   +  +              A           K       A ++ +    A
Sbjct: 280 QLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQVETEA 336

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 71  YTKPLEYIDKVVLVFSPACSKAKLLKVKLLL--AA-----KDYASAISETGYLLKEDENN 123
           Y K + +++      +    KA+ L++   L  A      + +++AI      L+ D NN
Sbjct: 170 YKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 229

Query: 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK 183
            + L  RG A+  + D ++A+  FQK L+L P +   K      +  +++  + E  +  
Sbjct: 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289

Query: 184 GKLRVAVED 192
                  E+
Sbjct: 290 NMFERLAEE 298

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 68.5 bits (167), Expect = 5e-13
 Identities = 28/179 (15%), Positives = 58/179 (32%), Gaps = 33/179 (18%)

Query: 118 KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177
           +E     +     G + +     + A + ++  +               + +        
Sbjct: 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-------------MGDDFMFQLYG 219

Query: 178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237
           +       ++                       +L +   L+KL R  +A+  C   L  
Sbjct: 220 KYQDMALAVKNP--------------------CHLNIAACLIKLKRYDEAIGHCNIVLTE 259

Query: 238 NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKD 296
            E+  +AL +RG+AK      + A +D + A + +P D  IR  L    +  K   +K 
Sbjct: 260 EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 62.3 bits (151), Expect = 6e-11
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 9/123 (7%)

Query: 71  YTKPLEYIDKVVLVFSPACSKAKLLKVKLL----LAA-----KDYASAISETGYLLKEDE 121
           Y   + Y+    +       +   L VK      +AA     K Y  AI     +L E+E
Sbjct: 202 YEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE 261

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
            N +AL  RG+A   L   D A+  F+K  +  P+   +++   AL    K     +  +
Sbjct: 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321

Query: 182 SKG 184
            KG
Sbjct: 322 YKG 324

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 183 KGKLRVAVEDFKAALALDPNHTAHN------------VHLYLGLCKVLVKLGRGKDALSS 230
           K ++  A+  +K AL    +    +            +   L L     K      A+  
Sbjct: 51  KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110

Query: 231 CTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290
            ++ L I++  ++AL + G A +     E A E+L  AA  +P +++IR +       LK
Sbjct: 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170

Query: 291 MSKRKDWYKILGVSKTASISEIKR 314
            +++KD     G+     + E K+
Sbjct: 171 EARKKDKLTFGGMFDKGPLYEEKK 194

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 71  YTKPLEYIDKV-VLVFSPACSKAKLLKVKLLL--AA-----KDYASAISETGYLLKEDEN 122
           Y + L++              K K +++   L  A      KDY  AI     +LK D+N
Sbjct: 61  YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120

Query: 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
           N++AL   G A  Y    + A+ +  K   L+P + +++ +Y    N LK+ +  +
Sbjct: 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
                  AV  +  A+ L+P     N   +        KLG    A+  C  A+ I+   
Sbjct: 24  KVENFEAAVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79

Query: 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290
            +A  + G A         AV   K A +  P +   +  L  AE  L+
Sbjct: 80  SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
            +YA A+ +    +  D    +A    G A   L  H  A  +++K L LDP++   K  
Sbjct: 60  GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119

Query: 164 YFALKNLLKK 173
               +  L++
Sbjct: 120 LKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 24/144 (16%)

Query: 118 KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL----KKAYFALKNLLKK 173
           +ED    E L   G     + + + A   + K + L+P ++        AY  L N    
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG- 64

Query: 174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE 233
                          AV+D + A+ +DP         Y  +   L  L +  +A++   +
Sbjct: 65  ---------------AVQDCERAICIDPA----YSKAYGRMGLALSSLNKHVEAVAYYKK 105

Query: 234 ALNINEELIEALVQRGEAKLLTED 257
           AL ++ +          A+L   +
Sbjct: 106 ALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           + +Y+ A+ D   AI  DP  S+AY   G               A   L++ ++A + + 
Sbjct: 59  LGNYAGAVQDCERAICIDPAYSKAYGRMGL--------------ALSSLNKHVEAVAYYK 104

Query: 61  SALKL 65
            AL+L
Sbjct: 105 KALEL 109

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 66.7 bits (162), Expect = 2e-12
 Identities = 35/302 (11%), Positives = 74/302 (24%), Gaps = 42/302 (13%)

Query: 65  LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL 124
            +  G Y + +    +V         +  +   +  LA + Y   + E   +       L
Sbjct: 9   AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDE---IKPSSAPEL 65

Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDP-------------------EHSELKKAYF 165
           +A+          +  D       + +                             +   
Sbjct: 66  QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225
              +L     + +  +   +L +A ++ K     D + T     L      +     + +
Sbjct: 126 QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL--TQLATAWVSLAAGGEKLQ 183

Query: 226 DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285
           DA     E  +     +  L  +    +    WE A   L+ A  +          L+  
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243

Query: 286 EKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDK-NVDNREEAENKFREIAA 344
            + L                     E+   Y       H     +      EN F  +  
Sbjct: 244 SQHLGKP-----------------PEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVL 286

Query: 345 AY 346
            Y
Sbjct: 287 QY 288

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 63.6 bits (155), Expect = 6e-12
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 41/194 (21%)

Query: 99  LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS 158
           L    KD+  A+          + +     + G  Y  L +   A++ F + +  D   +
Sbjct: 15  LAADKKDWKGALD---AFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71

Query: 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA-LDPNHTAHNVHLYLGLCKV 217
               AYF    L  +           K  +A++D K AL  L  N       L       
Sbjct: 72  V---AYFQRGMLYYQ---------TEKYDLAIKDLKEALIQLRGNQLIDYKIL------- 112

Query: 218 LVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277
                            L       E L          E+W+ A E L  A     +  +
Sbjct: 113 ----------------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156

Query: 278 --IREALMRAEKAL 289
             I +A+    K  
Sbjct: 157 SKIDKAMECVWKQK 170

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 26/172 (15%), Positives = 46/172 (26%), Gaps = 53/172 (30%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           +K+ +EA      +I  D  L+ AYF RG +  Q  +                     +D
Sbjct: 50  LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK---------------------YD 88

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A+K     +  + L  +                          +        G   K  
Sbjct: 89  LAIK-----DLKEALIQLR------------------------GNQLIDYKILGLQFK-- 117

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172
               E L +    Y    +   A+        +  E     K   A++ + K
Sbjct: 118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-RHSKIDKAMECVWK 168

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 63.6 bits (154), Expect = 7e-12
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 287 KALKMSKRKDWYKILGVSKTASIS--EIKRAYKKLALQWHPDKNVDN----REEAENKFR 340
                   +D++ ++  +++  +   +++  Y++L    HPD         ++ +E    
Sbjct: 35  ALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHST 94

Query: 341 EIAAAYEVLGDDDKRARYD---RGEDIEETGMGGGGFNF 376
            +  AY+ L     R  Y     G +I E         F
Sbjct: 95  LVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQF 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 67/402 (16%), Positives = 117/402 (29%), Gaps = 128/402 (31%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            + Y E  D L      D  +    F + +V R    +K R +        LL+ +    
Sbjct: 109 TRMYIEQRDRLYN----DNQV----FAKYNVSRLQPYLKLRQA--------LLELRP--A 150

Query: 61  SALKLYD---SGEYTKPLEYIDKVVLVFSPACSKAKLLKVK------LLLAAKDYASAIS 111
             + +     SG          K  +     C   K+          L L   +    + 
Sbjct: 151 KNVLIDGVLGSG----------KTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 112 ETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR-HFQKGLRLDPEHSELKKAYFALKNL 170
           E           L+ LL++        D +   R      ++L      ++     L+ L
Sbjct: 200 E----------MLQKLLYQ-------IDPNWTSRSDHSSNIKLRIH--SIQAE---LRRL 237

Query: 171 LKKTKSAE-----DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225
           LK            NV   K       F             N+      CK+L+   R K
Sbjct: 238 LKSKPYENCLLVLLNVQNAKA---WNAF-------------NLS-----CKILL-TTRFK 275

Query: 226 ---DALSSCTEALNINEELIEALVQRGEAKLLTEDW-EGAVEDLKSAAQQ-SPQDMNIRE 280
              D LS+ T      +     L    E K L   + +   +DL       +P+ ++I  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 281 ALMRAEKALKMSKRKDWYKILGVSKTASI----------SEIKRAYKKLA---------- 320
             +R   A       D +K +   K  +I          +E ++ + +L+          
Sbjct: 335 ESIRDGLA-----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 321 --LQ--WHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARY 358
             L   W  D    +     NK  +    Y ++    K +  
Sbjct: 390 ILLSLIWF-DVIKSDVMVVVNKLHK----YSLVEKQPKESTI 426

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 68/417 (16%), Positives = 130/417 (31%), Gaps = 117/417 (28%)

Query: 3   HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSA 62
            Y + L     A   +       F    V         ++ ++++E+  ++ ++      
Sbjct: 17  QYKDILSVFEDAFVDN-------FDCKDVQDMP-----KSILSKEEIDHIIMSKDAVSGT 64

Query: 63  LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY---ASAISETGYLLKE 119
           L+L+ +   +K     +++V  F           V+ +L   +Y    S I         
Sbjct: 65  LRLFWTLL-SKQ----EEMVQKF-----------VEEVL-RINYKFLMSPIKT------- 100

Query: 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED 179
            E    +++ R     Y+   D      Q        +    + Y  L+  L + +    
Sbjct: 101 -EQRQPSMMTR----MYIEQRDRLYNDNQV---FAKYNVSRLQPYLKLRQALLELRP-AK 151

Query: 180 NVS------KGKLRVAVE---DFKAALALDPNHTAHNVH-LYLGLC-------KVLVKLG 222
           NV        GK  VA++    +K    +D       +  L L  C       ++L KL 
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 223 RGKD------ALSSCTEALNINE------ELI------EAL-----VQRGEA-------- 251
              D      +  S    L I+        L+        L     VQ  +A        
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 252 KLL--TEDWEGAVEDLKSAAQQSPQDMNIREALMRAE------KALKMSKRKDWYKILGV 303
           K+L  T   +   + L +A        +    L   E      K L    +    ++L  
Sbjct: 267 KILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 304 SKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFRE-IAAAYEVLGDDDKRARYD 359
           +    +S I  + +     W   K+V+      +K    I ++  VL   + R  +D
Sbjct: 326 NPRR-LSIIAESIRDGLATWDNWKHVNC-----DKLTTIIESSLNVLEPAEYRKMFD 376

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 5/138 (3%)

Query: 154 DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL- 212
            P   E + A     ++ +  K   +    G    A+  +  AL LD         L+  
Sbjct: 12  GPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-QAVLHRN 70

Query: 213 -GLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271
              C +  KL     A +  ++A+  +   ++AL +R +A       + AV DL+     
Sbjct: 71  RAACHL--KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128

Query: 272 SPQDMNIREALMRAEKAL 289
            P++   +EAL       
Sbjct: 129 EPKNKVFQEALRNISGPS 146

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
           +DY  A +E    +++D  +++AL  R +A   L   D A    Q+ + L+P++   ++ 
Sbjct: 79  EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE- 137

Query: 164 YFALKNLLKKT 174
             AL+N+   +
Sbjct: 138 --ALRNISGPS 146

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 59.3 bits (145), Expect = 4e-11
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 18/145 (12%)

Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184
           EA  + G AYY   D+D A  ++QK L LDP  +E   A++ L N   K         +G
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYK---------QG 49

Query: 185 KLRVAVEDFKAALALDPNHT-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243
               A+E ++ AL LDP    A      LG      K G   +A+    +AL ++    E
Sbjct: 50  DYDEAIEYYQKALELDPRSAEAWY---NLGN--AYYKQGDYDEAIEYYQKALELDPRSAE 104

Query: 244 ALVQRGEAKLLTEDWEGAVEDLKSA 268
           A    G A     D++ A+E  + A
Sbjct: 105 AWYNLGNAYYKQGDYDEAIEYYQKA 129

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 18/118 (15%)

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
            + EA  + G AYY   D+D A  ++QK L LDP  +E   A++ L N   K        
Sbjct: 33  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYK-------- 81

Query: 182 SKGKLRVAVEDFKAALALDPNHT-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
            +G    A+E ++ AL LDP    A      LG      K G   +A+    +AL ++
Sbjct: 82  -QGDYDEAIEYYQKALELDPRSAEAWY---NLGN--AYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 80/202 (39%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              Y EA++    A+E DP  +EA+++ G+                 +     +A   + 
Sbjct: 14  QGDYDEAIEYYQKALELDPRSAEAWYNLGNAY--------------YKQGDYDEAIEYYQ 59

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            AL+L        P                                A A     +     
Sbjct: 60  KALEL-------DP------------------------------RSAEA-----W----- 72

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
             NL      G AYY   D+D A  ++QK L LDP  +E   A++ L N   K       
Sbjct: 73  -YNL------GNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYK------- 115

Query: 181 VSKGKLRVAVEDFKAALALDPN 202
             +G    A+E ++ AL LDP 
Sbjct: 116 --QGDYDEAIEYYQKALELDPR 135

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 58.8 bits (143), Expect = 7e-11
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 20/149 (13%)

Query: 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH 203
             H      ++P+ +        +KN         +   KG    A++ +  A+  +P  
Sbjct: 2   GHHHHHHSHMNPDLAL------MVKNK------GNECFQKGDYPQAMKHYTEAIKRNPK- 48

Query: 204 TAHNVHLY--LGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGA 261
              +  LY     C    KL   + AL  C E + +    I+   ++  A    +D+  A
Sbjct: 49  ---DAKLYSNRAACYT--KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 103

Query: 262 VEDLKSAAQQSPQDMNIREALMRAEKALK 290
           ++  + A           +   R   A  
Sbjct: 104 MDVYQKALDLDSSCKEAADGYQRCMMAQY 132

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
            ++  A+ +    ++ +   ++    +  A   + D+  A   +QK L LD    E    
Sbjct: 64  LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

Query: 164 Y 164
           Y
Sbjct: 124 Y 124

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 59.6 bits (144), Expect = 8e-11
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 285 AEKALKMSKRKDWYKILGVSK-------TASISEIKRAYKKLALQWHPDKNVDNREEAEN 337
           +   ++      +Y++   +        T   S +++ Y++L  Q HPD           
Sbjct: 1   SNALVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----GSE 56

Query: 338 KFREIAAAYEVLGDDDKRARYDR 360
           +   +  AY  L D  +R++Y  
Sbjct: 57  QSSTLNQAYHTLKDPLRRSQYML 79

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 16/152 (10%)

Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
              S       L +   + LE L       Y    ++ A   FQ    LD   S     +
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---FF 58

Query: 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224
             L    +           G+  +A+  +     +D          +   C  L++ G  
Sbjct: 59  LGLGACRQA---------MGQYDLAIHSYSYGAVMDIXE--PRFPFHAAEC--LLQXGEL 105

Query: 225 KDALSSCTEALNINEELIEALVQRGEAKLLTE 256
            +A S    A  +     E          + E
Sbjct: 106 AEAESGLFLAQELIANXPEFXELSTRVSSMLE 137

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 19/150 (12%)

Query: 147 FQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH 206
                 +  +  E     ++L         A +    G    A   F+A   LD      
Sbjct: 10  IAMLNEISSDTLE---QLYSL---------AFNQYQSGXYEDAHXVFQALCVLDHY---- 53

Query: 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLK 266
           +   +LGL      +G+   A+ S +    ++           E  L   +   A   L 
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 267 SA---AQQSPQDMNIREALMRAEKALKMSK 293
            A       P+   +   +    +A+K+ K
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEAIKLKK 143

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 1/126 (0%)

Query: 54  QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISET 113
             +  +  A   Y SG Y         + ++     S+  L       A   Y  AI   
Sbjct: 20  TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-DHYDSRFFLGLGACRQAMGQYDLAIHSY 78

Query: 114 GYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK 173
            Y    D        H         +   A+        L     E  +    + ++L+ 
Sbjct: 79  SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138

Query: 174 TKSAED 179
            K  ++
Sbjct: 139 IKLKKE 144

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 18/132 (13%)

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
            N+ EA  + G AYY   D+D A  ++QK L LDP ++E   A++ L N   K       
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYK------- 55

Query: 181 VSKGKLRVAVEDFKAALALDPNHT-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239
             +G    A+E ++ AL LDPN+  A      LG      K G   +A+    +AL ++ 
Sbjct: 56  --QGDYDEAIEYYQKALELDPNNAEAWY---NLGN--AYYKQGDYDEAIEYYQKALELDP 108

Query: 240 ELIEALVQRGEA 251
              EA    G A
Sbjct: 109 NNAEAKQNLGNA 120

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 20/111 (18%)

Query: 98  KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
               A + Y  A+      L  +  N EA  + G AYY   D+D A  ++QK L LDP +
Sbjct: 24  DYDEAIEYYQKALE-----LDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76

Query: 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT-AHN 207
           +E   A++ L N   K         +G    A+E ++ AL LDPN+  A  
Sbjct: 77  AE---AWYNLGNAYYK---------QGDYDEAIEYYQKALELDPNNAEAKQ 115

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 15/107 (14%)

Query: 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT-AHNVHLYLGLCKVLVKL 221
           A++ L N   K         +G    A+E ++ AL LDPN+  A      LG      K 
Sbjct: 11  AWYNLGNAYYK---------QGDYDEAIEYYQKALELDPNNAEAWY---NLGN--AYYKQ 56

Query: 222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
           G   +A+    +AL ++    EA    G A     D++ A+E  + A
Sbjct: 57  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.1 bits (90), Expect = 9e-04
 Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 71/173 (41%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              Y EA++    A+E DP  +EA+++ G+                 +     +A   + 
Sbjct: 22  QGDYDEAIEYYQKALELDPNNAEAWYNLGNAY--------------YKQGDYDEAIEYYQ 67

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            AL+L        P                              + A A     +     
Sbjct: 68  KALEL-------DP------------------------------NNAEA-----W----- 80

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK 173
             NL      G AYY   D+D A  ++QK L LDP ++E   A   L N  +K
Sbjct: 81  -YNL------GNAYYKQGDYDEAIEYYQKALELDPNNAE---AKQNLGNAKQK 123

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
               K   A   +  A+  +P         Y       +K+ + + AL+ C  AL ++ +
Sbjct: 20  FVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKI 300
            ++A    G+ +L  E ++ A+ +L+ A   + +             AL+++K+K W  I
Sbjct: 76  SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE--QRLNFGDDIPSALRIAKKKRWNSI 133

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160
           L  +    A+++    L+ D  +++A    G+    +  +D A  + Q+   L  E    
Sbjct: 54  LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113

Query: 161 KKAYFALKNLLKKTKSAE 178
                 + + L+  K   
Sbjct: 114 FGD--DIPSALRIAKKKR 129

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 277 NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN--VDNREE 334
           NIR AL+     +  +    W  + G++   +  ++K+ Y+K  L  HP K       + 
Sbjct: 17  NIR-ALLSTMHTVLWAGETKWKPV-GMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQY 74

Query: 335 AENKFREIAAAYEVLGD 351
           A+  F E+  A+    +
Sbjct: 75  AKMIFMELNDAWSEFEN 91

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 14/119 (11%)

Query: 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED 179
            + N E     G   Y   ++  +   F+K ++LDPE S+    +      L        
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK---YWLMKGKALYN------ 52

Query: 180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
                +   AV+ +   + +  +   +N  ++      L  +   +           + 
Sbjct: 53  ---LERYEEAVDCYNYVINVIEDE--YNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 66/157 (42%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
             +Y+E++D    AI+ DP  S+ +  +G  L  L R                     ++
Sbjct: 19  AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER---------------------YE 57

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
            A+  Y+                                          I+     + ED
Sbjct: 58  EAVDCYN----------------------------------------YVIN-----VIED 72

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
           E N +    +  A  Y+   +V     +   +L+  H
Sbjct: 73  EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS 176
           ++ D    +  L +G+A Y L  ++ A   +   + +  +    K  + A  + L+    
Sbjct: 33  IQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYI-- 89

Query: 177 AEDNVSKGKLRVAVEDFKAALALDPNH 203
                      V  E  +A   L+ +H
Sbjct: 90  -------EGKEVEAEIAEARAKLEHHH 109

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 20/89 (22%), Positives = 40/89 (44%)

Query: 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLK 266
           N+ LY  + +  + +G   +A  + +E L   E   +AL +R +A++     + A EDLK
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 267 SAAQQSPQDMNIREALMRAEKALKMSKRK 295
              +  P   ++    M+     +  K+ 
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKA 150

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 71  YTKPLEYIDKVVLVFSPA---CSKAKLLKVKLLL--AA-----KDYASAISETGYLLKED 120
           Y   L  +D ++L   P      +     + L    +       D   A   +  +LK +
Sbjct: 34  YRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED 179
           E N +AL  R +A       D A+   +  LR  P  + +      +    +  K A+ 
Sbjct: 94  ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 56.0 bits (136), Expect = 4e-10
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
           +S G +  A++ +  A+ LDP+    N  LY        K G  + A     + +++  +
Sbjct: 15  LSVGNIDDALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
             +   ++  A      +E A    +   +    +  ++E L   E 
Sbjct: 71  WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 11/68 (16%), Positives = 29/68 (42%)

Query: 101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160
               DY  A  +    +    +  +    +  A  +L   + A+R +++GL+ +  + +L
Sbjct: 49  AKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

Query: 161 KKAYFALK 168
           K+    ++
Sbjct: 109 KEGLQNME 116

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 22/122 (18%)

Query: 90  SKAKLLKVK--LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHF 147
            +   LK K    L+  +   A+      +K D +N     +R  AY    D+  A    
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 148 QKGLRLDPEHSELKKAYF----ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH 203
            K + L P+     K Y     AL+ L              +   A   ++  L  + N+
Sbjct: 62  CKTVDLKPDWG---KGYSRKAAALEFL-------------NRFEEAKRTYEEGLKHEANN 105

Query: 204 TA 205
             
Sbjct: 106 PQ 107

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
             KG    A+  +  A+  DP     N  LY      L KL   + AL  C   + ++ +
Sbjct: 24  FKKGDYPTAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
            I+  +++    +   +W  A    + A Q  P +   RE +    +
Sbjct: 80  FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 9/61 (14%), Positives = 28/61 (45%)

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
            ++  A+ +    ++ D   ++  + +      + +   AQR ++  L++DP + E ++ 
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

Query: 164 Y 164
            
Sbjct: 121 V 121

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 22/121 (18%)

Query: 91  KAKLLKVK--LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ 148
            A+  K K        DY +A+      +K D  N     +R      L +   A     
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71

Query: 149 KGLRLDPEHSELKKAYF----ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT 204
             +RLD +     K Y      L  +              +   A   ++ AL +DP++ 
Sbjct: 72  TCIRLDSKFI---KGYIRKAACLVAM-------------REWSKAQRAYEDALQVDPSNE 115

Query: 205 A 205
            
Sbjct: 116 E 116

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 290 KMSKRKDWYKILGVSKTA-SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEV 348
           KM+ + +  +IL +++   +  ++K  ++K+ L  HPDK             +I  A + 
Sbjct: 10  KMNSK-EALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPF-----LATKINEAKDF 63

Query: 349 LGDDDKR 355
           L      
Sbjct: 64  LEKRGIS 70

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 58.2 bits (140), Expect = 1e-09
 Identities = 34/250 (13%), Positives = 72/250 (28%), Gaps = 53/250 (21%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS 61
           K   E ++ +   IE  P   + + HR  ++  L                          
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD---------------------PSQ 184

Query: 62  ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE 121
            L+                 +L        A   +  ++   K + + +     LLKED 
Sbjct: 185 ELEFIAD-------------ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231

Query: 122 NNLEALLHRGRAYYYLADHDVAQR------HFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
            N      R         ++          +  + ++L P +     A+  LK +L+   
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES---AWNYLKGILQDRG 288

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235
            ++                  L L P+H++  +  +L      +   +  +      +AL
Sbjct: 289 LSK----------YPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 338

Query: 236 NINEELIEAL 245
            + E L +  
Sbjct: 339 ELCEILAKEK 348

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 32/272 (11%), Positives = 78/272 (28%), Gaps = 38/272 (13%)

Query: 14  AIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--------------LLQAQSTF 59
            I       + Y +  +VL++  R +    +    +                L   Q   
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 60  DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE 119
              +    +             ++   P   +    +  L+   +D +  +     +L +
Sbjct: 149 HEEMNYITA-------------IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195

Query: 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED 179
           D  N  A  HR          D   ++  + L+ D  ++     +     ++  T    D
Sbjct: 196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS---VWNQRYFVISNTTGYND 252

Query: 180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239
              +  L   V+     + L P+    N   +  L  +L   G  K   +   + L++  
Sbjct: 253 ---RAVLEREVQYTLEMIKLVPH----NESAWNYLKGILQDRGLSK-YPNLLNQLLDLQP 304

Query: 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271
                 +      +  +  E   ++ +    +
Sbjct: 305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 40/278 (14%), Positives = 80/278 (28%), Gaps = 30/278 (10%)

Query: 99  LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL-ADHDVAQRHFQKGLRLDPEH 157
           +L   +    A   T   ++ +  N      R      L  D      +    +   P++
Sbjct: 106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165

Query: 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKV 217
            +    +   + L++  +              +E     L  D      N H +     V
Sbjct: 166 YQ---VWHHRRVLVEWLRDPSQ---------ELEFIADILNQDAK----NYHAWQHRQWV 209

Query: 218 LVKLGRGKDALSSCTEALNINEELIEALVQRG------EAKLLTEDWEGAVEDLKSAAQQ 271
           + +     + L    + L  +        QR                E  V+      + 
Sbjct: 210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269

Query: 272 SPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN 331
            P + +    L    +   +SK  +    L   + +  S    A+     +   +   DN
Sbjct: 270 VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329

Query: 332 REEAENKFREIAAAYEVLGD--DDKRARY--DRGEDIE 365
           +E+  NK  E+    E+L    D  R  Y    G  ++
Sbjct: 330 KEDILNKALEL---CEILAKEKDTIRKEYWRYIGRSLQ 364

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
                   A++ +  A+ L+P+    N   Y       ++      AL   T A+ ++++
Sbjct: 24  FKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKD 296
            I+   +R  + +    +  A+ D ++  +  P D + +       K +K    + 
Sbjct: 80  YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 12/78 (15%), Positives = 30/78 (38%)

Query: 101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160
           L  + Y  A+ +    ++ D+  ++    R  +   L     A R ++  +++ P   + 
Sbjct: 58  LRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117

Query: 161 KKAYFALKNLLKKTKSAE 178
           K  Y     ++K+     
Sbjct: 118 KMKYQECNKIVKQKAFER 135

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 87  PACSKAKLLKVK--LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144
            A  +A+ LK +      AKDY +AI      ++ + +N     +R  AY     +  A 
Sbjct: 8   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 67

Query: 145 RHFQKGLRLDPEHSELKKAYF----ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD 200
               + + LD ++    K Y+    +   L             GK R A+ D++  + + 
Sbjct: 68  GDATRAIELDKKYI---KGYYRRAASNMAL-------------GKFRAALRDYETVVKVK 111

Query: 201 PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
           P+       +    C  +VK    + A++      ++ + L
Sbjct: 112 PHDKD--AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 298 YKILGVSKTASISEIKRAYKKLALQWHPDKN------VDNREEAENKFREIAAAYEVLGD 351
           +K + +      + ++++Y++  L  HPDK        + +  AE  F  +  A++    
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102

Query: 352 D 352
            
Sbjct: 103 L 103

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
            K     A++ +  A  LDP     N+        V  + G        C +A+ +  E 
Sbjct: 16  KKKDFDTALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71

Query: 242 IE-------ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR 294
            E       A  + G +    E ++ A+     +  +     ++ +   +AEK LK  +R
Sbjct: 72  REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQAEKILKEQER 130

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 91  KAKLLKVK--LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ 148
           +A   K         KD+ +A+       + D  N+  + ++   Y+   D++  +   +
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 149 KGLRLDPEHSELK----KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202
           K + +  E+ E      KAY  + N   K         + K + A+  +  +LA    
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFK---------EEKYKDAIHFYNKSLAEHRT 111

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 6/136 (4%)

Query: 40  ARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL 99
            + ++ EKEL      +  FD+ALK Y      K  E +D   + +    +     K   
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHY-----DKAKE-LDPTNMTYITNQAAVYFEKGDY 54

Query: 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159
               +    AI       ++     +A    G +Y+    +  A   + K L        
Sbjct: 55  NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114

Query: 160 LKKAYFALKNLLKKTK 175
           LKK   A K L ++ +
Sbjct: 115 LKKCQQAEKILKEQER 130

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 4/174 (2%)

Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
              K   A   +  A+  +P         Y       +K+ + + AL+ C  AL ++ + 
Sbjct: 16  VGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71

Query: 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKIL 301
           ++A    G+ +L  E ++ A+ +L+ A   + +        + +   +   KR +  +  
Sbjct: 72  VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEER 131

Query: 302 GVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
            + + + +            +   ++   N E  E+     A    +    DK 
Sbjct: 132 RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKY 185

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 12/80 (15%), Positives = 27/80 (33%)

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
           +    A+++    L+ D  +++A    G+    +  +D A  + Q+   L  E       
Sbjct: 52  QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

Query: 164 YFALKNLLKKTKSAEDNVSK 183
                  + K K       +
Sbjct: 112 DIPSALRIAKKKRWNSIEER 131

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
           K     AV+ +   +   P     +   Y      L KL    +A++ C +A+  +   +
Sbjct: 17  KSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72

Query: 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRK 295
            A +++  A++  +++  A+E L +A  +  +  N   A    +   K S+++
Sbjct: 73  RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
             +  AI++    +++D N + A + +  A   + ++  A          D E +    +
Sbjct: 52  MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN-GSS 110

Query: 164 YFALKNLLKKTKSA 177
              +  L  K    
Sbjct: 111 AREIDQLYYKASQQ 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 16/137 (11%)

Query: 91  KAKLLKVK--LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ 148
           KA+  +++        D+ +A+     ++K    +     +R  A   L     A     
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 149 KGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV 208
           K +  DP      +AY                    +   A+E   AA   D     +N 
Sbjct: 63  KAIEKDPNFV---RAYIRKATAQIAV---------KEYASALETLDAARTKDAEV--NNG 108

Query: 209 HLYLGLCKVLVKLGRGK 225
                + ++  K  + +
Sbjct: 109 SSAREIDQLYYKASQQR 125

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159
             + ++  + +      ++ +  N E     G  Y +  D+  +   +++ L+L  E++E
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV 219
           L  A   +                            ALALD N       + L       
Sbjct: 80  LYAALATVLYYQASQHMTAQ---------TRAMIDKALALDSNEI--TALMLLAS--DAF 126

Query: 220 KLGRGKDALSSCTEALNINEELIEA 244
                  A+    + +++N   I  
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINR 151

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 21/142 (14%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
           +++ +   A++ +  AL++ P     N              G+ + A      A  ++ +
Sbjct: 22  MARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN--IREALMRAEKALKMSKRKDWY 298
             +A  + G A+    D++GA E  +   +      +  ++  L   ++ ++ + R    
Sbjct: 78  YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEP 137

Query: 299 KILGVSKTASISEIKRAYKKLA 320
               V   A  S        L+
Sbjct: 138 PADDVDDAAGASRGAGGMPDLS 159

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS-- 158
            A+  +  A  +       D    +A    G A + +AD+  A+  ++KG+  +      
Sbjct: 56  SASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115

Query: 159 ELKKAYFALKNLLKKTKSAED 179
            +K+     K  +++     +
Sbjct: 116 AMKRGLETTKRKIEEANRGAE 136

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 56.3 bits (135), Expect = 7e-09
 Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 12/179 (6%)

Query: 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDV-----AQRHFQKGLRLD 154
           L  A +          L K   +    L +  +A+ YL   D      A     + ++  
Sbjct: 170 LSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS 229

Query: 155 PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214
           PE +       A K L+   + ++  + + +L     +    + L   +    ++    +
Sbjct: 230 PEFTYA----RAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV 285

Query: 215 CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273
               +  G+  ++  +    +++    +   V  G+   +      A +   +A    P
Sbjct: 286 S--ALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRP 341

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 32/181 (17%)

Query: 44  VAEKELSQLLQAQSTFDSALKLY----------DSGEYTKPLEYIDKVV-------LVFS 86
             ++    L +      + L  +          D     +  E + ++V          +
Sbjct: 178 WPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARA 237

Query: 87  PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA--DHDVAQ 144
                  +   +  L  K  A+  +E   ++   E N  +++++ +A   L     D + 
Sbjct: 238 EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESY 297

Query: 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT 204
           +    G+ L+         Y  L  + +          KG  R A + +  A  L P   
Sbjct: 298 QAINTGIDLEMSWL----NYVLLGKVYEM---------KGMNREAADAYLTAFNLRPGAN 344

Query: 205 A 205
            
Sbjct: 345 T 345

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 41/185 (22%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS 61
           K  + A + L   +++ P  + A   +  V         R+S    +  QL    +  D+
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIV------RHSQHPLDEKQLAALNTEIDN 266

Query: 62  ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK--E 119
            + L +                      S    +K    L       +      +    +
Sbjct: 267 IVTLPE------------------LNNLSIIYQIKAVSALVKGKTDESYQ---AINTGID 305

Query: 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE------------HSELKKAYFAL 167
            E +    +  G+ Y     +  A   +     L P              + +      L
Sbjct: 306 LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 365

Query: 168 KNLLK 172
              L 
Sbjct: 366 DKFLA 370

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 53.3 bits (128), Expect = 9e-09
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 20/147 (13%)

Query: 147 FQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH 206
            +    +  +  +     ++          A D  +KG++  A   F+     D      
Sbjct: 25  LKDINAIPDDMMD---DIYSY---------AYDFYNKGRIEEAEVFFRFLCIYDFY---- 68

Query: 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLK 266
           NV   +GL  +     + + A      A  + +     +   G+ +L  +    A E  +
Sbjct: 69  NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128

Query: 267 SAAQQSPQDMNIREALMRAEKALKMSK 293
              Q S  +    +  ++A+  L   +
Sbjct: 129 LVIQHSNDE----KLKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 13/159 (8%)

Query: 12  NTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEY 71
            T  E+  T      + G+ L+ +  +                    +  A   Y+ G  
Sbjct: 5   ITENESISTAVIDAINSGATLKDINAIPDDM------------MDDIYSYAYDFYNKGRI 52

Query: 72  TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRG 131
            +   +   + +          +    +    + +  A           +N+   + H G
Sbjct: 53  EEAEVFFRFLCIY-DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111

Query: 132 RAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170
           +    L     A+  F+  ++   +     KA   L  +
Sbjct: 112 QCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
           ED  +        + +    +   A   F++ +  DP++      Y+ L  L ++     
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---TYYHLGKLYER----- 53

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223
                 +   A++ +   + +              L    +K   
Sbjct: 54  ----LDRTDDAIDTYAQGIEVAREEG--TQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159
            L   + + A++    L++ D + +    H G+ Y  L   D A   + +G+ +  E   
Sbjct: 17  HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76

Query: 160 LKKAYFALKNLLKKTKSAE 178
            +K    L++   K +  E
Sbjct: 77  -QKDLSELQDAKLKAEGLE 94

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
                 A++ +  A+ L+P++       Y       ++      AL   T A+ ++++ I
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAI----YYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74

Query: 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK 293
           +   +R  + +    +  A+ D ++  +  P D + +       K +K   
Sbjct: 75  KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 15/122 (12%), Positives = 45/122 (36%), Gaps = 15/122 (12%)

Query: 55  AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSP-ACSKAKLLKVKLLLAAKDYASAISET 113
               +++A+K Y     ++ +E      + +   + +  +          + Y  A+ + 
Sbjct: 18  KAKDYENAIKFY-----SQAIELNPSNAIYYGNRSLAYLRT---------ECYGYALGDA 63

Query: 114 GYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK 173
              ++ D+  ++    R  +   L     A R ++  +++ P   + K  Y     ++K+
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123

Query: 174 TK 175
             
Sbjct: 124 KA 125

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 14/108 (12%)

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
           +L +  +N+      G+ Y      D A  H +  L  DP +S    A+  L   L+   
Sbjct: 11  MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV---AWKWLGKTLQG-- 65

Query: 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223
                  +G    A + +++ LA   +    +  +   L   L +L R
Sbjct: 66  -------QGDRAGARQAWESGLAAAQSR--GDQQVVKELQVFLRRLAR 104

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 189 AVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR 248
             E  +A LA   +    N+ L   L K   +  +   AL     AL+ +     A    
Sbjct: 4   ITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL 59

Query: 249 GEAKLLTEDWEGAVEDLKSAAQQSPQDM------NIREALMRAEKAL 289
           G+      D  GA +  +S    +           ++  L R  +  
Sbjct: 60  GKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 16/95 (16%)

Query: 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205
             +  L    ++       F L     +           +   A+   +AAL  DP ++ 
Sbjct: 7   RLEAMLAQGTDNML---LRFTLGKTYAE---------HEQFDAALPHLRAALDFDPTYSV 54

Query: 206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
                +LG  K L   G    A  +    L   + 
Sbjct: 55  --AWKWLG--KTLQGQGDRAGARQAWESGLAAAQS 85

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 13/102 (12%)

Query: 137 LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA 196
           L     A  +++K +    +  +L + Y  L +  +           G+ R A       
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL---------GEYRKAEAVLANG 53

Query: 197 LALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
           +   PNH A  + ++  +   L  LGR +  +    + +   
Sbjct: 54  VKQFPNHQA--LRVFYAMV--LYNLGRYEQGVELLLKIIAET 91

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161
           A   Y  AI+       + ++  E  L  G  +  L ++  A+     G++  P H  L+
Sbjct: 9   AVPYYEKAIA----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 162 KAY-FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205
             Y   L NL             G+    VE     +A   +   
Sbjct: 65  VFYAMVLYNL-------------GRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243
           G    AV  ++ A+A            YLGL      LG  + A +     +        
Sbjct: 4   GLEAQAVPYYEKAIASGLQG-KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289
             V           +E  VE L     ++  D    E +   ++A+
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETSDD----ETIQSYKQAI 104

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 12/106 (11%)

Query: 98  KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
             +L   + A A      + +++    EA    G          +A         LDP+ 
Sbjct: 25  LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84

Query: 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH 203
                 + AL                     A+   +A L   P +
Sbjct: 85  IA---VHAALAVSHTNE---------HNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
              L  A   F+A    +P          LGL     +  +   A+ +   A  ++ + I
Sbjct: 30  LANLAEAALAFEAVCQKEPER--EEAWRSLGLT--QAENEKDGLAIIALNHARMLDPKDI 85

Query: 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274
                   +     +   A+  L++     PQ
Sbjct: 86  AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 1/110 (0%)

Query: 51  QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAI 110
             +  ++  +  L +       +     + V     P   +A           +    AI
Sbjct: 13  PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAI 71

Query: 111 SETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160
               +    D  ++        ++    + + A    +  L   P++ +L
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159
               KD+  A       ++ D +N+    ++   Y+         +  +K + +  E   
Sbjct: 18  AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77

Query: 160 LK----KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN 207
                 KA     N  +K         +  L +AV+ F  +L+   +     
Sbjct: 78  DYKLIAKAMSRAGNAFQK---------QNDLSLAVQWFHRSLSEFRDPELVK 120

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
           +     A   +  A+ LDP+    N+  Y     V  +  +  + +  C +A+ +  E  
Sbjct: 21  QKDFEKAHVHYDKAIELDPS----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76

Query: 243 -------EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
                  +A+ + G A     D   AV+    +  +      +++ +   EK
Sbjct: 77  ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK-VKELEK 127

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.5 bits (104), Expect = 5e-06
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 13/88 (14%)

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
            N+ EA  + G AYY   D+D A  ++QK L LDP ++E   A++ L N   K       
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYK------- 55

Query: 181 VSKGKLRVAVEDFKAALALDPNHT-AHN 207
             +G    A+E ++ AL LDPN+  A  
Sbjct: 56  --QGDYDEAIEYYQKALELDPNNAEAKQ 81

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 40.1 bits (95), Expect = 9e-05
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 15/91 (16%)

Query: 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT-AHNVHLYLGLCKVLVK 220
           +A++ L N   K         +G    A+E ++ AL LDPN+  A      LG      K
Sbjct: 10  EAWYNLGNAYYK---------QGDYDEAIEYYQKALELDPNNAEAWY---NLGN--AYYK 55

Query: 221 LGRGKDALSSCTEALNINEELIEALVQRGEA 251
            G   +A+    +AL ++    EA    G A
Sbjct: 56  QGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 32/184 (17%), Positives = 50/184 (27%), Gaps = 28/184 (15%)

Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPE-HSELKKAYFALKNLLKKTKSAEDNVSK 183
             L   G       D       F+  +++  E    L   Y  L N              
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF---------YL 60

Query: 184 GKLRVAVEDFKAALALD---PNHTAH-NVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239
                A+E     L L     +          LG    L  LG   +A+  C   L+I+ 
Sbjct: 61  HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN--TLKVLGNFDEAIVCCQRHLDISR 118

Query: 240 ELIEALVQRGEAKLLTE---------DWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290
           EL +   + GEA+ L              G                 ++ A+   E+ L 
Sbjct: 119 ELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175

Query: 291 MSKR 294
           +   
Sbjct: 176 LVTA 179

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 31/183 (16%), Positives = 50/183 (27%), Gaps = 26/183 (14%)

Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPE-HSELKKAYFALKNLLKKTKSAEDNVSK 183
             L   G       D       F+  +++  E    L   Y  L N              
Sbjct: 6   LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF---------YL 56

Query: 184 GKLRVAVEDFKAALALD---PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
                A+E     L L     +           L   L  LG   +A+  C   L+I+ E
Sbjct: 57  HDYAKALEYHHHDLTLARTIGDQLGE-AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115

Query: 241 LIEALVQRGEAKLLTE---------DWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291
           L +   + GEA+ L              G      +          ++ A+   E+ L +
Sbjct: 116 LND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172

Query: 292 SKR 294
              
Sbjct: 173 VTA 175

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 31/181 (17%), Positives = 49/181 (27%), Gaps = 27/181 (14%)

Query: 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPE-HSELKKAYFALKNLLKKTKSAEDNVSKG 184
            L   G       D       FQ  ++   E    L   Y  L N              G
Sbjct: 50  ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF---------YLG 100

Query: 185 KLRVAVEDFKAALAL-----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239
               A++  K  L L     D    A      LG    L  +GR  +A   C   L +  
Sbjct: 101 DYNKAMQYHKHDLTLAKSMNDRLGEA-KSSGNLGN--TLKVMGRFDEAAICCERHLTLAR 157

Query: 240 ELIEALVQRGEAKLLT------EDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK 293
           +L +   +  E + L             +               +  A+   ++ LK+ +
Sbjct: 158 QLGD---RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214

Query: 294 R 294
            
Sbjct: 215 D 215

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 40/174 (22%), Positives = 57/174 (32%), Gaps = 30/174 (17%)

Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
            NL      G  YY L D   A  H Q+ LR+  E  +      A  NL         ++
Sbjct: 227 GNL------GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL------GNSHI 274

Query: 182 SKGKLRVAVEDFKAALALD---PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
             G+   A E +K  LAL                 L      L     A+      L I 
Sbjct: 275 FLGQFEDAAEHYKRTLALAVELGEREVE-AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333

Query: 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS 292
           +EL +   + GEA+            L +A            AL  AE+ L+++
Sbjct: 334 QELGD---RIGEARAC--------WSLGNAHSA--IG-GHERALKYAEQHLQLA 373

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 33/268 (12%), Positives = 73/268 (27%), Gaps = 21/268 (7%)

Query: 18  DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEY 77
           + T S A   +   + +   V      +  + S++L AQ    +A +  +        + 
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA-----FQL 122

Query: 78  IDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK-----EDENNLEALLHRGR 132
           I++  L   P       ++ +LL A      A +     ++     + +  L+ L    +
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182

Query: 133 AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVED 192
                 D D A+    +   L                +             G    A   
Sbjct: 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR-----VIYWQMTGDKAAAANW 237

Query: 193 FKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE------LIEALV 246
            +     +  +       +  + +  + LG  + A     E             L   L+
Sbjct: 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297

Query: 247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274
              +          A   L  A + + +
Sbjct: 298 LLNQLYWQAGRKSDAQRVLLDALKLANR 325

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 39/273 (14%), Positives = 80/273 (29%), Gaps = 52/273 (19%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR--------VKARNSVAEKELSQL 52
           + +Y EA       +  D   +E +F        + +        ++A +      L  +
Sbjct: 121 IGYYREAEK-ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179

Query: 53  LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA--------- 103
              QS F  A    D   Y K L +++        A   A  ++    +A          
Sbjct: 180 RTIQSLFVIAGNYDDFKHYDKALPHLEA-------ALELAMDIQNDRFIAISLLNIANSY 232

Query: 104 ---KDYASAISETGYLLK--------EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152
               D   A+    +  K          +   + L               A +  ++GL 
Sbjct: 233 DRSGDDQMAVE---HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289

Query: 153 LDPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHL 210
                 H   K+ +  L+ + K+T        + K+   +  F+       N  A+    
Sbjct: 290 HITARSHKFYKELFLFLQAVYKETV------DERKIHDLLSYFEKK-----NLHAYIEAC 338

Query: 211 YLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243
                 V       + A +   + L   E++++
Sbjct: 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 43/243 (17%)

Query: 22  SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81
            + Y +R +V   L  ++      +K+L+ LL+  S F   +  +D  EY + + Y  + 
Sbjct: 72  GKTYGNRPTVTELLETIET----PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRE- 126

Query: 82  VLVFSPACSKAKLLKVKLLLAA------------KDYASAISETGYLLK----------E 119
                 A  +   +   +  A             K    ++    ++L+           
Sbjct: 127 ------AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY---HILQALDIYQNHPLY 177

Query: 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED 179
               +++L      Y     +D A  H +  L L  +    +    +L N+      A  
Sbjct: 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI------ANS 231

Query: 180 NVSKGKLRVAVEDFKAALALDP-NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238
               G  ++AVE F+ A  +           +  GL   L K G+ + A     E L+  
Sbjct: 232 YDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291

Query: 239 EEL 241
              
Sbjct: 292 TAR 294

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 127 LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL 186
            L   +      D + A +  ++ L+ +P   +  +AY+ + N  +K          G  
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKD--EAYYLMGNAYRK---------LGDW 51

Query: 187 RVAVEDFKAALALDPNHTAHNVHLYLG 213
           + A+ ++++A+ L+P+  A      + 
Sbjct: 52  QKALNNYQSAIELNPDSPALQARKMVM 78

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
           +G  R AV  +   +   P     N   Y      L+KLG    A+  C + L       
Sbjct: 17  QGLYREAVHCYDQLITAQPQ----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72

Query: 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275
              + R + +   E  +GAV  ++    +  + 
Sbjct: 73  HVAI-RSKLQYRLELAQGAVGSVQIPVVEVDEL 104

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 8/68 (11%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           +  Y++A+      +    T            R          +A+  +  +       D
Sbjct: 51  LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE--------LAQGAVGSVQIPVVEVD 102

Query: 61  SALKLYDS 68
              + YD 
Sbjct: 103 ELPEGYDR 110

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 41/312 (13%), Positives = 94/312 (30%), Gaps = 57/312 (18%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFH--RGSVLRQLCR-VKARN------SVAEKELSQL 52
              S+ L +++        L E YF+  RG         + A        S       ++
Sbjct: 81  PRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI 140

Query: 53  LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISE 112
            +A+  F  +   Y   +    ++Y  +   ++                  + Y   + +
Sbjct: 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK---------------EHEAYNIRLLQ 185

Query: 113 TGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172
                    +           +  L  ++ A  HFQK   +     + +     L N+  
Sbjct: 186 C-------HSLF------ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI-- 230

Query: 173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN--VHLYLGLCKVLVKLGRGKDALSS 230
                    S+ +   A+  FK A+A+             Y  + ++  KLG+   A   
Sbjct: 231 ----GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286

Query: 231 CTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290
            ++ +  +++  +       ++            LKS     P +  I+      E  + 
Sbjct: 287 HSKGMAYSQKAGD---VIYLSEFEF---------LKSLYLSGPDEEAIQGFFDFLESKML 334

Query: 291 MSKRKDWYKILG 302
            +  +D+   + 
Sbjct: 335 YADLEDFAIDVA 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.95
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.94
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.94
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.94
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.93
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.93
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.92
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.91
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.91
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.89
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.89
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.88
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.87
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.87
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.86
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.85
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.85
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.84
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.83
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.83
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.83
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.83
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.83
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.82
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.81
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.79
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.79
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.78
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.78
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.78
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.78
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.76
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.76
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.74
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.73
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.72
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.72
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.7
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.69
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.68
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.68
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.67
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.67
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.66
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.66
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.65
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.65
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.65
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.65
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.64
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.63
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.62
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.62
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.62
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.61
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.6
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.6
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.6
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.6
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.6
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.57
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.56
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.56
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.54
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.53
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.53
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.53
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.52
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.52
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.52
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.52
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.52
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.52
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.51
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.51
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.5
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.49
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.49
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.47
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.47
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.47
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.46
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.45
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.45
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.44
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.44
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.4
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.39
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.37
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.35
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.33
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.32
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.29
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.29
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.29
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.26
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.24
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.24
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.24
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.23
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.22
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.21
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.18
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.15
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.14
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.1
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.08
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.05
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.04
2guz_A	71	Mitochondrial import inner membrane translocase su	99.04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.99
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.97
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.93
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.93
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.92
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.86
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.81
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.78
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.76
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.71
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.63
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.31
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.26
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.23
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.21
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.14
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.03
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.87
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.78
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.77
2guz_B	65	Mitochondrial import inner membrane translocase su	97.75
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.75
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.73
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.4
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.26
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.25
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.15
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.06
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.99
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.95
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.93
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.51
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.38
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.35
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.12
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.75
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.53
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.4
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.38
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.35
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.24
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.17
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.13
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.13
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.89
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.66
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.4
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.22
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	93.53
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	92.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.64
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	92.1
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	91.95
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.72
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.66
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	85.58
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.24

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2.9e-45  Score=343.07  Aligned_cols=360  Identities=31%  Similarity=0.496  Sum_probs=312.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----------------HHHHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----------------QAQSTFDSALK   64 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----------------~~~~~~~~a~~   64 (409)
                      +|++++|+..|+++++.+|+++.++..+|.+|..+|++++|...+.+.+...+                .....+..|..
T Consensus        73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  152 (450)
T 2y4t_A           73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN  152 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888888888888888888888888888887777665211                11234556777


Q ss_pred             HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837           65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus        65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      ++..|++++|+..|++ ++...|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+
T Consensus       153 ~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  231 (450)
T 2y4t_A          153 AFGSGDYTAAIAFLDK-ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL  231 (450)
T ss_dssp             HHHHTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            8889999999999998 888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                      ..|++++..+|++......+..+..+......+..+...|++++|+.+|++++++.|+++.....++..+|.++...|++
T Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~  311 (450)
T 2y4t_A          232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP  311 (450)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence            99999999999998854444444444444555666677799999999999999999996554467899999999999999


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhccc
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVS  304 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  304 (409)
                      ++|+..+++++.++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+..+...++.....++|.++++.
T Consensus       312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~  391 (450)
T 2y4t_A          312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK  391 (450)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             ccCCHHHHHHHHHHHHhccCCCCCCCc--hHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          305 KTASISEIKRAYKKLALQWHPDKNVDN--REEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       305 ~~~~~~e~~~~y~~~a~~~~~d~~~~~--~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      +.++.++++++|+++++.+|||+.+..  +..++++|++|.+||++|+||++|.+||+|
T Consensus       392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            999999999999999999999997764  478999999999999999999999999986

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=4.6e-33  Score=251.85  Aligned_cols=291  Identities=25%  Similarity=0.388  Sum_probs=242.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----HHHHH------------HHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----QAQST------------FDSALKL   65 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~------------~~~a~~~   65 (409)
                      |++++|+..|+++++.+|+++.++..+|.++...|++++|...+.+.+...+    .....            +..|..+
T Consensus        51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (359)
T 3ieg_A           51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA  130 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777777777777777777777777777777766655222    22222            2336778


Q ss_pred             HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837           66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  145 (409)
                      ...|++++|+..+++ ++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.
T Consensus       131 ~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  209 (359)
T 3ieg_A          131 FDGADYTAAITFLDK-ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS  209 (359)
T ss_dssp             HHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHccCHHHHHHHHHH-HHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            888888888888888 7888888888888889999999999999999999998888888888899999999999999999


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK  225 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~  225 (409)
                      .+++++..+|++......+..+..+......+..++..|++++|+..++++++..|+++.....++..+|.++...|+++
T Consensus       210 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  289 (359)
T 3ieg_A          210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV  289 (359)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence            99999988888887555555555555566667778888999999999999999999966545567889999999999999


Q ss_pred             HHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Q 043837          226 DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK  293 (409)
Q Consensus       226 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  293 (409)
                      +|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+..+...+++++
T Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999988887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6e-33  Score=254.51  Aligned_cols=272  Identities=17%  Similarity=0.160  Sum_probs=200.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |++++|+..|.++++.+|+++.++..++.++...|++++|...+...+... .....++..+..+...|++++|+..|++
T Consensus        13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   92 (388)
T 1w3b_A           13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH   92 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            677888888888888888888888888888888888888877777776643 3455667777777777777777777777


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       ++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|++++..+|++.. 
T Consensus        93 -al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-  170 (388)
T 1w3b_A           93 -ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV-  170 (388)
T ss_dssp             -HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH-
T ss_pred             -HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-
Confidence             677777777777777777777777777777777777777777777777777777777777777777777777777776 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                        ++..++.++...         |++++|+..|+++++++|+    ...++.++|.++...+++++|+..+++++.++|+
T Consensus       171 --~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  235 (388)
T 1w3b_A          171 --AWSNLGCVFNAQ---------GEIWLAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN  235 (388)
T ss_dssp             --HHHHHHHHHHTT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred             --HHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence              777777776665         7777777777777777776    5556777777777777777777777777777777


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      ++.++..+|.++...|++++|+..|+++++++|+++.++..+..+....+
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  285 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence            77777777777777777777777777777777776666666655554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.3e-33  Score=257.32  Aligned_cols=275  Identities=19%  Similarity=0.188  Sum_probs=237.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++++|+..++++++.+|.++.++..+|.++...|++++|+..+.+++...+ ....++..+..+...|++++|+..|.
T Consensus        46 ~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  125 (388)
T 1w3b_A           46 CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV  125 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999887533 34567788888999999999999998


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      + ++..+|+...++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++..
T Consensus       126 ~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  204 (388)
T 1w3b_A          126 S-ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD  204 (388)
T ss_dssp             H-HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             H-HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            8 888899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                         ++..++.++...         +++++|+..+++++.++|+    +..++.++|.++...|++++|+..++++++++|
T Consensus       205 ---~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  268 (388)
T 1w3b_A          205 ---AYINLGNVLKEA---------RIFDRAVAAYLRALSLSPN----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP  268 (388)
T ss_dssp             ---HHHHHHHHHHTT---------TCTTHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred             ---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence               888888888777         8888888888888888887    666888888888888888888888888888888


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS  292 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  292 (409)
                      +++.++..+|.++...|++++|+..|++++++.|++..++..+..+....+..
T Consensus       269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence            88888888888888888888888888888888888888777777766554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=8.7e-31  Score=236.85  Aligned_cols=295  Identities=18%  Similarity=0.225  Sum_probs=263.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+.+.+...+ ....++..+..+...|++++|+..+.
T Consensus        16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   95 (359)
T 3ieg_A           16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK   95 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999988533 45778889999999999999999999


Q ss_pred             HHHHhhCC---CcHHHHHHH------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837           80 KVVLVFSP---ACSKAKLLK------------VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus        80 ~~~~~~~p---~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      + ++...|   .+..++..+            |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+
T Consensus        96 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  174 (359)
T 3ieg_A           96 K-VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI  174 (359)
T ss_dssp             H-HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             H-HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            9 899999   888888777            799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH--------HHHHHHHH
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV--------HLYLGLCK  216 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~la~  216 (409)
                      ..+++++..+|++..   ++..++.++...         |++++|+..++++++..|+++....        .....+|.
T Consensus       175 ~~~~~~~~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          175 SDLKAASKLKSDNTE---AFYKISTLYYQL---------GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             HHHHHHHTTCSCCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998   899999999888         9999999999999999998543100        11235589


Q ss_pred             HHHHcCChhHHHHHHHHHHhcChhcHH----HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837          217 VLVKLGRGKDALSSCTEALNINEELIE----ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS  292 (409)
Q Consensus       217 ~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  292 (409)
                      ++...|++++|+..++++++..|+++.    ++..+|.++...|++++|+..++++++.+|+++.++..++.+....+. 
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-  321 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM-  321 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-
Confidence            999999999999999999999998874    466799999999999999999999999999999999999888876655 


Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPD  326 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d  326 (409)
                                      .++....|++ +....|+
T Consensus       322 ----------------~~~A~~~~~~-a~~~~p~  338 (359)
T 3ieg_A          322 ----------------YDEAIQDYEA-AQEHNEN  338 (359)
T ss_dssp             ----------------HHHHHHHHHH-HHTTCTT
T ss_pred             ----------------HHHHHHHHHH-HHhcCCC
Confidence                            5667777776 4444554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=240.29  Aligned_cols=274  Identities=16%  Similarity=0.101  Sum_probs=255.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCC-CchHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSG-EYTKPLEYI   78 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~-~~~~A~~~~   78 (409)
                      .|++++|+..|+++++.+|.+..++..++.++...|++++|...+.+.+... .....++..+..+...| ++++|+.++
T Consensus        35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  114 (330)
T 3hym_B           35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL  114 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999998854 34677888999999999 999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837           79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus        79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      .+ ++..+|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++..+|++.
T Consensus       115 ~~-a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  193 (330)
T 3hym_B          115 SK-ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP  193 (330)
T ss_dssp             HH-HHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HH-HHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence            99 89999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc-----cchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT-----AHNVHLYLGLCKVLVKLGRGKDALSSCTE  233 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~  233 (409)
                      .   ++..++.++...         |++++|+.++++++++.|...     .....++..+|.++...|++++|+.++++
T Consensus       194 ~---~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  261 (330)
T 3hym_B          194 F---VMHEVGVVAFQN---------GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ  261 (330)
T ss_dssp             H---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHc---------ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            8   899999998887         999999999999999763211     11467999999999999999999999999


Q ss_pred             HHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          234 ALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       234 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      +++++|+++.++..+|.++..+|++++|+.+++++++++|+++.++..+..+..
T Consensus       262 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888888763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=5.5e-30  Score=239.38  Aligned_cols=277  Identities=18%  Similarity=0.219  Sum_probs=253.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+.+++... .....++..+..+...|++++|+..|+
T Consensus        39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  118 (450)
T 2y4t_A           39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK  118 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999998853 346677889999999999999999999


Q ss_pred             HHHHhhCCCcH---HHHHHH------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837           80 KVVLVFSPACS---KAKLLK------------VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus        80 ~~~~~~~p~~~---~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      + ++..+|.+.   .++..+            |.++...|++++|+..|+++++..|.++.++..+|.+|...|++++|+
T Consensus       119 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  197 (450)
T 2y4t_A          119 K-VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI  197 (450)
T ss_dssp             H-HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred             H-HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence            9 899999988   776555            677999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH----------
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL----------  214 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l----------  214 (409)
                      ..|++++..+|++..   ++..++.++...         |++++|+..+++++.+.|++    ...+..+          
T Consensus       198 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~  261 (450)
T 2y4t_A          198 SDLKAASKLKNDNTE---AFYKISTLYYQL---------GDHELSLSEVRECLKLDQDH----KRCFAHYKQVKKLNKLI  261 (450)
T ss_dssp             HHHHHHHHHHCSCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHH
Confidence            999999999999988   899999998888         99999999999999999994    4444444          


Q ss_pred             --HHHHHHcCChhHHHHHHHHHHhcChhcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          215 --CKVLVKLGRGKDALSSCTEALNINEELI----EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       215 --a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                        |.++...|++++|+..|++++++.|+++    .++..+|.++...|++++|+..++++++++|++..++..+..+...
T Consensus       262 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  341 (450)
T 2y4t_A          262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI  341 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence              9999999999999999999999999874    4788999999999999999999999999999999999999998887


Q ss_pred             Hhhcch
Q 043837          289 LKMSKR  294 (409)
Q Consensus       289 ~~~~~~  294 (409)
                      .+....
T Consensus       342 ~~~~~~  347 (450)
T 2y4t_A          342 EEMYDE  347 (450)
T ss_dssp             TTCHHH
T ss_pred             hcCHHH
Confidence            765443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1.1e-30  Score=237.38  Aligned_cols=275  Identities=17%  Similarity=0.134  Sum_probs=244.9

Q ss_pred             CCChHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHH
Q 043837            1 MKHYSEALD-DLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKP   74 (409)
Q Consensus         1 lg~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A   74 (409)
                      +++|++|+. .|++++.+.|+++    ..++.+|.++...|++++|+..+.+.+.. +.....++..+..+...|++++|
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  117 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA  117 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            478999999 9999999988774    56899999999999999999999999884 34566778899999999999999


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH----------------HHHHHHHhcC
Q 043837           75 LEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALL----------------HRGRAYYYLA  138 (409)
Q Consensus        75 ~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~~~~  138 (409)
                      +..+.+ ++..+|.++.++..+|.++...|++++|+..+++++..+|.+...+.                .++.++ ..|
T Consensus       118 ~~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  195 (368)
T 1fch_A          118 ISALRR-CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS  195 (368)
T ss_dssp             HHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH
T ss_pred             HHHHHH-HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc
Confidence            999999 89999999999999999999999999999999999999999877664                466666 999


Q ss_pred             ChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH
Q 043837          139 DHDVAQRHFQKGLRLDPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK  216 (409)
Q Consensus       139 ~~~~A~~~~~~al~~~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~  216 (409)
                      ++++|+..+++++..+|+  +..   ++..++.++...         |++++|+..+++++.+.|+    ...++.++|.
T Consensus       196 ~~~~A~~~~~~a~~~~p~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~----~~~~~~~l~~  259 (368)
T 1fch_A          196 LFLEVKELFLAAVRLDPTSIDPD---VQCGLGVLFNLS---------GEYDKAVDCFTAALSVRPN----DYLLWNKLGA  259 (368)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcCcccHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcC----CHHHHHHHHH
Confidence            999999999999999999  677   888899888887         9999999999999999999    6779999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-----------HHHHHHHHHH
Q 043837          217 VLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD-----------MNIREALMRA  285 (409)
Q Consensus       217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~  285 (409)
                      ++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|++++++.|++           ..++..+..+
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~  339 (368)
T 1fch_A          260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA  339 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988           7888888888


Q ss_pred             HHHHhhcc
Q 043837          286 EKALKMSK  293 (409)
Q Consensus       286 ~~~~~~~~  293 (409)
                      ...+++..
T Consensus       340 ~~~~g~~~  347 (368)
T 1fch_A          340 LSMLGQSD  347 (368)
T ss_dssp             HHHHTCGG
T ss_pred             HHHhCChH
Confidence            87776543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=239.54  Aligned_cols=257  Identities=16%  Similarity=0.098  Sum_probs=180.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH---------------------------
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL---------------------------   53 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---------------------------   53 (409)
                      +|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.+.+...+                           
T Consensus        52 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  131 (514)
T 2gw1_A           52 VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG  131 (514)
T ss_dssp             HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred             HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            37888999999999999999999999999999999999998887776543210                           


Q ss_pred             -----------------------------------------------------HHHHHHHHHHHHHh---CCCchHHHHH
Q 043837           54 -----------------------------------------------------QAQSTFDSALKLYD---SGEYTKPLEY   77 (409)
Q Consensus        54 -----------------------------------------------------~~~~~~~~a~~~~~---~~~~~~A~~~   77 (409)
                                                                           .....+..+..++.   .|++++|+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  211 (514)
T 2gw1_A          132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES  211 (514)
T ss_dssp             -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred             HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence                                                                 13344555555554   6778888888


Q ss_pred             HHHHHHh-----h--C-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837           78 IDKVVLV-----F--S-------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        78 ~~~~~~~-----~--~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  143 (409)
                      +++ ++.     .  +       |..+.++..+|.++...|++++|+..++++++.+|. ..++..+|.++...|++++|
T Consensus       212 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A  289 (514)
T 2gw1_A          212 FTK-AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEY  289 (514)
T ss_dssp             HHH-HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTG
T ss_pred             HHH-HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHH
Confidence            877 555     3  2       455677888888888888888888888888888888 77888888888888888888


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR  223 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~  223 (409)
                      +..+++++..+|.+..   ++..++.++...         |++++|+..+++++++.|.    +..++..+|.++...|+
T Consensus       290 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~  353 (514)
T 2gw1_A          290 YNYFDKALKLDSNNSS---VYYHRGQMNFIL---------QNYDQAGKDFDKAKELDPE----NIFPYIQLACLAYRENK  353 (514)
T ss_dssp             GGHHHHHHTTCTTCTH---HHHHHHHHHHHT---------TCTTHHHHHHHHHHHTCSS----CSHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHhhcCcCCHH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHHcCC
Confidence            8888888888887777   777777777665         5666666666666665555    33355555555555555


Q ss_pred             hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          224 GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      +++|+..++++++..|+++.++..+|.++...|++++|+..++++++..|++
T Consensus       354 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            5555555555555555555555555555555555555555555555555554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=2.2e-30  Score=234.52  Aligned_cols=258  Identities=14%  Similarity=0.053  Sum_probs=232.5

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHhhCCCcHH
Q 043837           14 AIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGE-YTKPLEYIDKVVLVFSPACSK   91 (409)
Q Consensus        14 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~p~~~~   91 (409)
                      +|.++|++..++..+|.++...|++++|+..+.+++... .....++.++..+...|+ +++|+..|++ ++..+|++..
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~-al~l~P~~~~  167 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQ  167 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHCTTCHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHH-HHHHCCCCHH
Confidence            356778889999999999999999999999999998854 446778889999999996 9999999999 9999999999


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      +|+.+|.++..+|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+.+|++++.++|++..   +|..++.++
T Consensus       168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~---a~~~lg~~l  244 (382)
T 2h6f_A          168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS---VWNQRYFVI  244 (382)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999   999999998


Q ss_pred             HHHHHHhhHHhcCCHHHH-----HHHHHHHHccCCCCccchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcChhcHHH
Q 043837          172 KKTKSAEDNVSKGKLRVA-----VEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG--RGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      ..+        .+.+++|     +.+|++++.++|+    +..+|.+++.++...|  ++++|+..+.++ +.+|+++.+
T Consensus       245 ~~l--------~~~~~eA~~~~el~~~~~Al~l~P~----~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~a  311 (382)
T 2h6f_A          245 SNT--------TGYNDRAVLEREVQYTLEMIKLVPH----NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYL  311 (382)
T ss_dssp             HHT--------TCSCSHHHHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHH
T ss_pred             HHh--------cCcchHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHH
Confidence            873        0554777     5999999999999    6779999999999988  699999999998 999999999


Q ss_pred             HHHHHHHHHhcc--------C-HHHHHHHHHHH-HhhCCCcHHHHHHHHHHHHH
Q 043837          245 LVQRGEAKLLTE--------D-WEGAVEDLKSA-AQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       245 ~~~la~~~~~~~--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~  288 (409)
                      +..+|.+|..++        + +++|+.+|+++ ++++|.....+..+......
T Consensus       312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            999999999984        3 59999999999 99999999988877766543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.2e-29  Score=241.24  Aligned_cols=273  Identities=14%  Similarity=0.079  Sum_probs=250.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++++|+..|+++++.+|++..++..++.++...|++++|...+...+... .....+...+..+...|++++|+.+|+
T Consensus       318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  397 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS  397 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999998887643 345667778899999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      + ++..+|.+..++..++.++...|++++|+..|+++++..|++..++..++.+|...|++++|+..|++++...|++..
T Consensus       398 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  476 (597)
T 2xpi_A          398 K-SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL  476 (597)
T ss_dssp             H-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             H-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            9 888999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC---CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN---HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                         ++..++.++...         |++++|+..|++++++.|+   ++.....++..++.++...|++++|+..++++++
T Consensus       477 ---~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (597)
T 2xpi_A          477 ---LLNELGVVAFNK---------SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL  544 (597)
T ss_dssp             ---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence               899999998887         9999999999999998432   2221378999999999999999999999999999


Q ss_pred             cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      ++|+++.++..++.+|...|++++|+..|+++++++|+++.++..+..++
T Consensus       545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888777653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=4.3e-29  Score=223.23  Aligned_cols=264  Identities=13%  Similarity=0.040  Sum_probs=237.8

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc
Q 043837           11 LNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC   89 (409)
Q Consensus        11 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~   89 (409)
                      ....+...|+++..+..+|.++...|++++|+..+.+.+...+. .......+..++..|++++|+..+.+ ++..+|.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~   89 (330)
T 3hym_B           11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK-LVDLYPSN   89 (330)
T ss_dssp             ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTS
T ss_pred             hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHH-HHHhCcCC
Confidence            44566677888899999999999999999999999998875433 34455678888999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK  168 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~  168 (409)
                      +.++..+|.++...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|++..   .+..++
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~  166 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL---PMLYIG  166 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH---HHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH---HHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999888   788888


Q ss_pred             HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---------h
Q 043837          169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN---------E  239 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p  239 (409)
                      .++...         |++++|+..++++++..|+    +..++..+|.++...|++++|+..+++++...         |
T Consensus       167 ~~~~~~---------~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  233 (330)
T 3hym_B          167 LEYGLT---------NNSKLAERFFSQALSIAPE----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD  233 (330)
T ss_dssp             HHHHHT---------TCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred             HHHHHH---------hhHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence            888877         9999999999999999999    67899999999999999999999999999986         6


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      ..+.++..+|.++...|++++|+..++++++++|++..++..++.+....+.
T Consensus       234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            7788999999999999999999999999999999999999999988877765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=2.3e-28  Score=233.48  Aligned_cols=187  Identities=18%  Similarity=0.146  Sum_probs=118.9

Q ss_pred             chHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837           71 YTKPLEYIDKVVLVFSPACSK-------AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        71 ~~~A~~~~~~~~~~~~p~~~~-------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  143 (409)
                      +++|+..+++ ++..+|.++.       ++..+|.++...|++++|+..++++++.+|+ ..++..+|.++...|++++|
T Consensus       218 ~~~A~~~~~~-~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A  295 (537)
T 3fp2_A          218 LTKSTDMYHS-LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF  295 (537)
T ss_dssp             HHHHHHHHHH-HHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred             HHHHHHHHHH-HHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence            3444444444 4555565543       4555566666666666666666666666666 66666666666666666666


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR  223 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~  223 (409)
                      +..+++++..+|++..   ++..++.++...         |++++|+..+++++++.|+    ...++..+|.++...|+
T Consensus       296 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~  359 (537)
T 3fp2_A          296 FKFFQKAVDLNPEYPP---TYYHRGQMYFIL---------QDYKNAKEDFQKAQSLNPE----NVYPYIQLACLLYKQGK  359 (537)
T ss_dssp             HHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCCCCHH---HHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCC
Confidence            6666666666666666   666666666655         6666666666666666666    34466666666666666


Q ss_pred             hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          224 GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      +++|+..++++++.+|+++.++..+|.++...|++++|+..|++++++.|++
T Consensus       360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            6666666666666666666666666666666666666666666666665544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=9.3e-30  Score=231.26  Aligned_cols=266  Identities=15%  Similarity=0.123  Sum_probs=228.3

Q ss_pred             HHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837            9 DDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVL   83 (409)
Q Consensus         9 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   83 (409)
                      ..+.+++...|.++    ..++.+|.++...|++++|+..+.+++... .....++..+..+...|++++|+..|++ ++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al  126 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR-CL  126 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HH
Confidence            34444444455444    459999999999999999999999998853 4567788999999999999999999999 89


Q ss_pred             hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHhcCChHHHHHHHHHHHcc
Q 043837           84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHR----------GRAYYYLADHDVAQRHFQKGLRL  153 (409)
Q Consensus        84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~al~~  153 (409)
                      ..+|.++.++..+|.++...|++++|+..++++++++|++..++..+          |.++...|++++|+.++++++..
T Consensus       127 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  206 (365)
T 4eqf_A          127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ  206 (365)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999876666554          99999999999999999999999


Q ss_pred             CCC--cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837          154 DPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC  231 (409)
Q Consensus       154 ~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  231 (409)
                      +|+  +..   ++..++.++...         |++++|+.+|++++++.|+    +..++.++|.++...|++++|+..|
T Consensus       207 ~p~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~  270 (365)
T 4eqf_A          207 NGDMIDPD---LQTGLGVLFHLS---------GEFNRAIDAFNAALTVRPE----DYSLWNRLGATLANGDRSEEAVEAY  270 (365)
T ss_dssp             SCSSCCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcCccCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999  777   889999999888         9999999999999999999    6779999999999999999999999


Q ss_pred             HHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------------HHHHHHHHHHHHHHhh
Q 043837          232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD------------MNIREALMRAEKALKM  291 (409)
Q Consensus       232 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~  291 (409)
                      +++++++|+++.++..+|.++..+|++++|+.+|++++++.|++            ..++..+..+...+..
T Consensus       271 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence            99999999999999999999999999999999999999999884            4566666666655543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=3.6e-29  Score=227.42  Aligned_cols=253  Identities=16%  Similarity=0.127  Sum_probs=235.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++... .....++..+..+...|++++|+..+.
T Consensus        77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (368)
T 1fch_A           77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  156 (368)
T ss_dssp             TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999998854 346677889999999999999999999


Q ss_pred             HHHHhhCCCcHHHHH----------------HHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChH
Q 043837           80 KVVLVFSPACSKAKL----------------LKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHD  141 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~----------------~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~  141 (409)
                      + ++...|.+...+.                .++.++ ..|++++|+..++++++.+|+  ++.++..+|.++...|+++
T Consensus       157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~  234 (368)
T 1fch_A          157 D-WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD  234 (368)
T ss_dssp             H-HHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred             H-HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence            9 8889998877665                456666 999999999999999999999  8999999999999999999


Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc
Q 043837          142 VAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL  221 (409)
Q Consensus       142 ~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~  221 (409)
                      +|+..|++++.++|++..   ++..++.++...         |++++|+..|++++++.|+    ...++.++|.++...
T Consensus       235 ~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          235 KAVDCFTAALSVRPNDYL---LWNKLGATLANG---------NQSEEAVAAYRRALELQPG----YIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHC
Confidence            999999999999999988   899999998888         9999999999999999998    778999999999999


Q ss_pred             CChhHHHHHHHHHHhcChhc-----------HHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837          222 GRGKDALSSCTEALNINEEL-----------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       222 ~~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  271 (409)
                      |++++|+..+++++.+.|++           ..++..++.++..+|++++|...++++++.
T Consensus       299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence            99999999999999999988           899999999999999999999999877764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.3e-28  Score=235.62  Aligned_cols=289  Identities=17%  Similarity=0.094  Sum_probs=261.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |++++|+..|+++++. |.++.++..++.++...|++++|+..+.+.+...+ ....+...+..+...|++++|+..+.+
T Consensus       286 g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (597)
T 2xpi_A          286 DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND  364 (597)
T ss_dssp             HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            5688999999999988 78899999999999999999999999999887432 344566778888999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       ++...|.++.++..++.+|...|++++|+..|+++++++|.+..+|..++.+|...|++++|+..|++++...|++.. 
T Consensus       365 -~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-  442 (597)
T 2xpi_A          365 -LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL-  442 (597)
T ss_dssp             -HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH-
T ss_pred             -HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH-
Confidence             779999999999999999999999999999999999999999999999999999999999999999999999999888 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI---  237 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---  237 (409)
                        .+..++.++...         |++++|+..|+++++..|.    +..++..++.++...|++++|+..|+++++.   
T Consensus       443 --~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  507 (597)
T 2xpi_A          443 --PYLFLGMQHMQL---------GNILLANEYLQSSYALFQY----DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK  507 (597)
T ss_dssp             --HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence              899999999888         9999999999999999999    6779999999999999999999999999998   


Q ss_pred             ---Chhc-HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHH
Q 043837          238 ---NEEL-IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIK  313 (409)
Q Consensus       238 ---~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~  313 (409)
                         +|++ ..++..++.++...|++++|+..++++++++|++..++..+..+....++                 .++..
T Consensus       508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------------~~~A~  570 (597)
T 2xpi_A          508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI-----------------PGLAI  570 (597)
T ss_dssp             SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC-----------------HHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----------------HHHHH
Confidence               5654 88999999999999999999999999999999999999999988876665                 55666


Q ss_pred             HHHHHHHhccCCC
Q 043837          314 RAYKKLALQWHPD  326 (409)
Q Consensus       314 ~~y~~~a~~~~~d  326 (409)
                      +.|++ +...+|+
T Consensus       571 ~~~~~-~l~~~p~  582 (597)
T 2xpi_A          571 THLHE-SLAISPN  582 (597)
T ss_dssp             HHHHH-HHHHCTT
T ss_pred             HHHHH-HHhcCCC
Confidence            66666 3334444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=3.2e-29  Score=227.69  Aligned_cols=253  Identities=15%  Similarity=0.088  Sum_probs=226.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      .|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.+++... .....++..+..+...|++++|+..+.
T Consensus        78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  157 (365)
T 4eqf_A           78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK  157 (365)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHH
Confidence            3789999999999999999999999999999999999999999999998854 346778889999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHH----------HHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 043837           80 KVVLVFSPACSKAKLLK----------VKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHF  147 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~----------a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~  147 (409)
                      + ++...|.+..++..+          +.++...|++++|+..++++++++|+  ++.++..+|.++...|++++|+.+|
T Consensus       158 ~-al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~  236 (365)
T 4eqf_A          158 N-WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF  236 (365)
T ss_dssp             H-HHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             H-HHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9 888888876666555          99999999999999999999999999  8999999999999999999999999


Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837          148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA  227 (409)
Q Consensus       148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  227 (409)
                      ++++..+|++..   ++..++.++...         |++++|+..|++++++.|+    ...++.++|.++..+|++++|
T Consensus       237 ~~al~~~p~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          237 NAALTVRPEDYS---LWNRLGATLANG---------DRSEEAVEAYTRALEIQPG----FIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHCCCHHHH
Confidence            999999999988   899999999888         9999999999999999999    788999999999999999999


Q ss_pred             HHHHHHHHhcChh------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          228 LSSCTEALNINEE------------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       228 ~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      +.+|++++++.|+            +..+|..++.++..+|+.+.|....++.+.
T Consensus       301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            9999999999887            367899999999999999998877765433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=2.5e-29  Score=224.48  Aligned_cols=256  Identities=12%  Similarity=0.086  Sum_probs=174.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |++++|+..|+++++.+|+++.++..+|.++...|++++|...+.+.+... .....++..+..+...|++++|+..+.+
T Consensus        35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  114 (327)
T 3cv0_A           35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA  114 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            567777777777777777777777777777777777777777777666642 2344556666677777777777777766


Q ss_pred             HHHhhCCCcHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837           81 VVLVFSPACSKAKLLK--------------VK-LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  145 (409)
                       ++...|.+..++..+              +. ++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.
T Consensus       115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  193 (327)
T 3cv0_A          115 -WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA  193 (327)
T ss_dssp             -HHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence             666666666655555              54 56666777777777777777777777777777777777777777777


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK  225 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~  225 (409)
                      .+++++..+|++..   ++..++.++...         |++++|+..++++++..|+    ...++..+|.++...|+++
T Consensus       194 ~~~~~~~~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          194 NLRRAVELRPDDAQ---LWNKLGATLANG---------NRPQEALDAYNRALDINPG----YVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCCcHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhccHH
Confidence            77777777777666   666666666655         7777777777777777776    5556777777777777777


Q ss_pred             HHHHHHHHHHhcChh------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          226 DALSSCTEALNINEE------------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       226 ~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      +|+..+++++...|+            ++.++..++.++..+|++++|...++++++..|+
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence            777777777777766            6667777777777777777777777666655443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=1.3e-28  Score=235.14  Aligned_cols=269  Identities=14%  Similarity=0.141  Sum_probs=243.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSE-------AYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKP   74 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A   74 (409)
                      +++++|+..|+++++.+|+++.       ++..+|.++...|++++|+..+.+.+...+....++..+..+...|++++|
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  295 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF  295 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence            4689999999999999999865       578888999999999999999999998766677788899999999999999


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837           75 LEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD  154 (409)
Q Consensus        75 ~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  154 (409)
                      +.++.+ ++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+
T Consensus       296 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  374 (537)
T 3fp2_A          296 FKFFQK-AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF  374 (537)
T ss_dssp             HHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHH-HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc--hHHHHHHHHHHHHHc----------C
Q 043837          155 PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--NVHLYLGLCKVLVKL----------G  222 (409)
Q Consensus       155 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~la~~~~~~----------~  222 (409)
                      |++..   ++..++.++...         |++++|+..|++++++.|+++..  ....+..+|.++...          |
T Consensus       375 ~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  442 (537)
T 3fp2_A          375 PTLPE---VPTFFAEILTDR---------GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE  442 (537)
T ss_dssp             TTCTH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred             CCChH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence            99998   888999988887         99999999999999988764431  334467889999999          9


Q ss_pred             ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837          223 RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM  283 (409)
Q Consensus       223 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  283 (409)
                      ++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++++.|++.+....+.
T Consensus       443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  503 (537)
T 3fp2_A          443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT  503 (537)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999988765444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.97  E-value=5.6e-28  Score=211.79  Aligned_cols=259  Identities=13%  Similarity=0.048  Sum_probs=224.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTL-SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      +|+|.+|+..++++...+|++ .++...++.+|..+|+++.|+..+...  ..+........+..+...+++++|++.++
T Consensus        12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~   89 (291)
T 3mkr_A           12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELD   89 (291)
T ss_dssp             TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            589999999999988888887 468889999999999999998877553  33445555667777888899999999999


Q ss_pred             HHHHhh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837           80 KVVLVF--SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH  157 (409)
Q Consensus        80 ~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  157 (409)
                      + ++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..+|.++..+|++++|+..+++++..+|++
T Consensus        90 ~-ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  163 (291)
T 3mkr_A           90 R-EMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA  163 (291)
T ss_dssp             H-HHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             H-HHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence            8 5544  699999999999999999999999999998     8999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      ..     ..++..+..+     ....|++++|+..|+++++..|+    ++.++.++|.++..+|++++|+..+++++++
T Consensus       164 ~~-----~~l~~a~~~l-----~~~~~~~~eA~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          164 TL-----TQLATAWVSL-----AAGGEKLQDAYYIFQEMADKCSP----TLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HH-----HHHHHHHHHH-----HHCTTHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHH-----HhCchHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            53     2222211111     12338999999999999999998    7789999999999999999999999999999


Q ss_pred             ChhcHHHHHHHHHHHHhccCHHH-HHHHHHHHHhhCCCcHHHHHH
Q 043837          238 NEELIEALVQRGEAKLLTEDWEG-AVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       238 ~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~  281 (409)
                      +|+++.++.+++.++..+|++++ +..+++++++++|+++.+...
T Consensus       230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999999999999976 568999999999999987653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.9e-29  Score=234.95  Aligned_cols=273  Identities=17%  Similarity=0.169  Sum_probs=251.1

Q ss_pred             CCChHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIE-----A--D-------PTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLY   66 (409)
Q Consensus         1 lg~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~   66 (409)
                      .|++++|+..|+++++     +  +       |.++.++..+|.++...|++++|+..+.+.+...+....++..+..+.
T Consensus       202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~  281 (514)
T 2gw1_A          202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA  281 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence            3789999999999999     6  4       555788999999999999999999999999885444777788999999


Q ss_pred             hCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043837           67 DSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRH  146 (409)
Q Consensus        67 ~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  146 (409)
                      ..|++++|+..+.+ ++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..
T Consensus       282 ~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  360 (514)
T 2gw1_A          282 DRNDSTEYYNYFDK-ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL  360 (514)
T ss_dssp             TSSCCTTGGGHHHH-HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHH-HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc--hHHHHHHHHHHHHH---c
Q 043837          147 FQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--NVHLYLGLCKVLVK---L  221 (409)
Q Consensus       147 ~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~la~~~~~---~  221 (409)
                      +++++..+|++..   ++..++.++...         |++++|+..+++++...|+++..  ...++..+|.++..   .
T Consensus       361 ~~~~~~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  428 (514)
T 2gw1_A          361 FSEAKRKFPEAPE---VPNFFAEILTDK---------NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV  428 (514)
T ss_dssp             HHHHHHHSTTCSH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred             HHHHHHHcccCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence            9999999999988   889999988887         99999999999999998874321  14489999999999   9


Q ss_pred             CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       222 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      |++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+...+....
T Consensus       429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998877765443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=1.7e-27  Score=215.51  Aligned_cols=247  Identities=11%  Similarity=0.033  Sum_probs=218.4

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD-YASAISETGYLLKEDENNLEALLHRGR  132 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~  132 (409)
                      ....+...+..+...|++++|+..|++ ++..+|.+..+|+.+|.++..+|+ +++|+.+|+++++++|++..+|+.+|.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~-al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~  174 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRD-AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHH-HHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            455667788889999999999999999 999999999999999999999997 999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837          133 AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL  212 (409)
Q Consensus       133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  212 (409)
                      ++..+|++++|+..|++++.++|++..   +|..++.++..+         |++++|+.+|+++++++|+    +..+|+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~---a~~~lg~~~~~~---------g~~~eAl~~~~~al~l~P~----~~~a~~  238 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYH---AWQHRQWVIQEF---------KLWDNELQYVDQLLKEDVR----NNSVWN  238 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH---------TCCTTHHHHHHHHHHHCTT----CHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCC----CHHHHH
Confidence            999999999999999999999999999   999999999999         9999999999999999999    788999


Q ss_pred             HHHHHHHH-cCChhHH-----HHHHHHHHhcChhcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          213 GLCKVLVK-LGRGKDA-----LSSCTEALNINEELIEALVQRGEAKLLTE--DWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       213 ~la~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                      ++|.++.. .+.+++|     +.+|++++.++|++..+|..++.++...|  ++++|++.++++ +.+|++..+...+..
T Consensus       239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~  317 (382)
T 2h6f_A          239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVD  317 (382)
T ss_dssp             HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHH
Confidence            99999999 5555888     59999999999999999999999999988  799999999998 999999999999998


Q ss_pred             HHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCC
Q 043837          285 AEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD  326 (409)
Q Consensus       285 ~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d  326 (409)
                      ++..+.....        .......+++.+.|++++...+|+
T Consensus       318 ~~~~~~~~~~--------~~~~~~~~~A~~~~~~l~~~~DP~  351 (382)
T 2h6f_A          318 IYEDMLENQC--------DNKEDILNKALELCEILAKEKDTI  351 (382)
T ss_dssp             HHHHHHHTTC--------SSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHhcccc--------cchHHHHHHHHHHHHHHHHHhCch
Confidence            8876642110        000001356777777764566655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=2.5e-28  Score=204.89  Aligned_cols=196  Identities=19%  Similarity=0.226  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY  136 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  136 (409)
                      .++..+..++..|++++|+..|++ ++..+|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFER-ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            345556666666777788888888 8999999999999999999999999999999999999999999999999999999


Q ss_pred             c-----------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837          137 L-----------ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA  205 (409)
Q Consensus       137 ~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  205 (409)
                      .           |++++|+..|+++++++|++..   ++..++.++...         |++++|+..|+++++++ +   
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~-~---  149 (217)
T 2pl2_A           86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP---LHLQRGLVYALL---------GERDKAEASLKQALALE-D---  149 (217)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC-C---
T ss_pred             hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHhcc-c---
Confidence            9           9999999999999999999998   899999999888         99999999999999999 6   


Q ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                       ++.++.++|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..++++-.
T Consensus       150 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          150 -TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             -chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence             6789999999999999999999999999999999999999999999999999999999987643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9e-28  Score=206.82  Aligned_cols=241  Identities=15%  Similarity=0.182  Sum_probs=217.6

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc-------HHH
Q 043837           20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC-------SKA   92 (409)
Q Consensus        20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~-------~~~   92 (409)
                      ..+.++..+|.++...|++++|+..+.+.+........++..|..+...|++++|+..+.+ ++...|..       +.+
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLND-AVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHH-HHHhCcccccchHHHHHH
Confidence            3467888999999999999999999988887555566778888899999999999999988 77777766       799


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK  172 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~  172 (409)
                      +..+|.++...|++++|+..++++++++|.        +.++..++++++|+..+++++..+|.+..   ++..++.++.
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~  150 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAE---EARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHH---HHHHHHHHHH
Confidence            999999999999999999999999999987        45677788899999999999999998887   8889998888


Q ss_pred             HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHH
Q 043837          173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAK  252 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  252 (409)
                      ..         |++++|+..++++++..|.    +..++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus       151 ~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  217 (258)
T 3uq3_A          151 TK---------SDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ  217 (258)
T ss_dssp             HT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             Hh---------cCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            77         9999999999999999999    6789999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhhC------CCcHHHHHHHHHH
Q 043837          253 LLTEDWEGAVEDLKSAAQQS------PQDMNIREALMRA  285 (409)
Q Consensus       253 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~  285 (409)
                      ..+|++++|+.+++++++++      |++..+...+..+
T Consensus       218 ~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          218 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999      8888877776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.96  E-value=9.8e-28  Score=208.55  Aligned_cols=247  Identities=16%  Similarity=0.104  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc----HHHHHHHH
Q 043837           23 EAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC----SKAKLLKV   97 (409)
Q Consensus        23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~----~~~~~~~a   97 (409)
                      ++++.+|.++...|++++|+..+.+.+...+ ....++..+..++..|++++|+..+.+ ++. .|.+    ..++..+|
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET-YFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHH-HHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH-HHh-ccCchhHHHHHHHHHH
Confidence            3455555555555555555555555554322 223445555555666666677777776 555 3332    45699999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837           98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA  177 (409)
Q Consensus        98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~  177 (409)
                      .++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++..+|.+..   ++..++......   
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~---  155 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK---VFYELGQAYYYN---  155 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH---HHHHHHHHHHHT---
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH---HHHHHHHHHHHH---
Confidence            99999999999999999999999999999999999999999999999999999999999998   888888333333   


Q ss_pred             hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcC---hh-----cHHHHH
Q 043837          178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR---GKDALSSCTEALNIN---EE-----LIEALV  246 (409)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~---p~-----~~~~~~  246 (409)
                            +++++|+..+++++++.|+    +..++..+|.++..+++   +++|+..+++++++.   |+     ...++.
T Consensus       156 ------~~~~~A~~~~~~a~~~~p~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  225 (272)
T 3u4t_A          156 ------KEYVKADSSFVKVLELKPN----IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE  225 (272)
T ss_dssp             ------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence                  7999999999999999999    67799999999999999   999999999999875   44     347889


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       247 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      .+|.++...|++++|+.+|+++++++|+++.++..+..+..
T Consensus       226 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999888776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.3e-26  Score=214.35  Aligned_cols=261  Identities=12%  Similarity=0.043  Sum_probs=226.8

Q ss_pred             CCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH---------HHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEA---------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ---------AQSTFDSA   62 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~a   62 (409)
                      +|++++|++.|++++++         +|....+|.++|.+|..+|++++|...+.+++.....         +......+
T Consensus        64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g  143 (472)
T 4g1t_A           64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG  143 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence            58999999999999986         6788899999999999999999999999988774332         34455555


Q ss_pred             HHHH--hCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-
Q 043837           63 LKLY--DSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA---AKDYASAISETGYLLKEDENNLEALLHRGRAYYY-  136 (409)
Q Consensus        63 ~~~~--~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-  136 (409)
                      ..+.  ..++|++|+.+|++ ++..+|+++.++..++.++..   .+++++|++.++++++++|+++.++..+|..+.. 
T Consensus       144 ~~~~~~~~~~y~~A~~~~~k-al~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          144 WTRLKCGGNQNERAKVCFEK-ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             HHHHHHCTTHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred             HHHHHHccccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            5554  45689999999999 999999999999999988665   4677899999999999999999999988877655 


Q ss_pred             ---cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          137 ---LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       137 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                         .+++++|+.++++++..+|++..   ++..++.++...         +++++|+..++++++..|+    +..++.+
T Consensus       223 ~~~~~~~~~a~~~~~~al~~~~~~~~---~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~  286 (472)
T 4g1t_A          223 REEGEEEGEGEKLVEEALEKAPGVTD---VLRSAAKFYRRK---------DEPDKAIELLKKALEYIPN----NAYLHCQ  286 (472)
T ss_dssp             C------CHHHHHHHHHHHHCSSCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHc---------CchHHHHHHHHHHHHhCCC----hHHHHHH
Confidence               46788999999999999999998   899999999888         9999999999999999999    7779999


Q ss_pred             HHHHHHHc-------------------CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          214 LCKVLVKL-------------------GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       214 la~~~~~~-------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      +|.+|...                   ..+++|+..++++++++|.+..++..+|.++...|++++|+.+|+++++++|+
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT  366 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            99988643                   34678999999999999999999999999999999999999999999999988


Q ss_pred             cHHH
Q 043837          275 DMNI  278 (409)
Q Consensus       275 ~~~~  278 (409)
                      +...
T Consensus       367 ~~~~  370 (472)
T 4g1t_A          367 PVAK  370 (472)
T ss_dssp             HHHH
T ss_pred             ChHH
Confidence            6553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=3.2e-27  Score=205.31  Aligned_cols=242  Identities=12%  Similarity=0.056  Sum_probs=213.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH----HHHHHHHHHHHHhCCCchHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ----AQSTFDSALKLYDSGEYTKPLE   76 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~A~~   76 (409)
                      .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+.+.....    ...++..|..+...|++++|+.
T Consensus        16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~   95 (272)
T 3u4t_A           16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ   95 (272)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            479999999999999999999999999999999999999999999999883322    3447889999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 043837           77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE  156 (409)
Q Consensus        77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  156 (409)
                      .+.+ ++..+|.++.++..+|.++...|++++|+..++++++.+|.++.+++.+|...+..+++++|+..|+++++++|+
T Consensus        96 ~~~~-a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  174 (272)
T 3u4t_A           96 QYQA-AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN  174 (272)
T ss_dssp             HHHH-HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHH-HHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999 899999999999999999999999999999999999999999999999994445556999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhHHhcCC---HHHHHHHHHHHHccCCCCcc----chHHHHHHHHHHHHHcCChhHHHH
Q 043837          157 HSELKKAYFALKNLLKKTKSAEDNVSKGK---LRVAVEDFKAALALDPNHTA----HNVHLYLGLCKVLVKLGRGKDALS  229 (409)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~  229 (409)
                      +..   .+..++.++..+         ++   +++|+..+++++++....+.    ....++..+|.++...|++++|+.
T Consensus       175 ~~~---~~~~~~~~~~~~---------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  242 (272)
T 3u4t_A          175 IYI---GYLWRARANAAQ---------DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA  242 (272)
T ss_dssp             CHH---HHHHHHHHHHHH---------STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chH---HHHHHHHHHHHc---------CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            988   889999998888         77   89999999999998632221    134789999999999999999999


Q ss_pred             HHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837          230 SCTEALNINEELIEALVQRGEAKLLT  255 (409)
Q Consensus       230 ~~~~al~~~p~~~~~~~~la~~~~~~  255 (409)
                      +++++++++|+++.++..++.+....
T Consensus       243 ~~~~al~~~p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          243 AWKNILALDPTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             HHHHHHHHCTTCHHHHHHHC------
T ss_pred             HHHHHHhcCccHHHHHHHhhhhhccc
Confidence            99999999999999998887776544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=1.4e-26  Score=206.61  Aligned_cols=254  Identities=11%  Similarity=0.101  Sum_probs=229.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837           21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL   99 (409)
Q Consensus        21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~   99 (409)
                      +...++.+|.++...|++++|+..+.+.+... .....++..+..+...|++++|+..+.+ ++..+|.+..++..+|.+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH-ARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCcCCHHHHHHHHHH
Confidence            34567899999999999999999999988853 3456677889999999999999999999 899999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837          100 LLAAKDYASAISETGYLLKEDENNLEALLHR--------------GR-AYYYLADHDVAQRHFQKGLRLDPEHSELKKAY  164 (409)
Q Consensus       100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  164 (409)
                      +...|++++|+..++++++.+|.+...+..+              +. ++...|++++|+..+++++..+|++..   ++
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~  175 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ---LH  175 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH---HH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH---HH
Confidence            9999999999999999999999988877776              66 788999999999999999999999888   89


Q ss_pred             HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837          165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      ..++.++...         |++++|+..++++++..|+    ...++..+|.++...|++++|+..++++++.+|+++.+
T Consensus       176 ~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  242 (327)
T 3cv0_A          176 ASLGVLYNLS---------NNYDSAAANLRRAVELRPD----DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV  242 (327)
T ss_dssp             HHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHh---------ccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            9999988887         9999999999999999998    67799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHHhh
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ------------DMNIREALMRAEKALKM  291 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~  291 (409)
                      +..+|.++..+|++++|+..+++++++.|+            +..++..+..+...+++
T Consensus       243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  301 (327)
T 3cv0_A          243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR  301 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999            77888888887776654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.95  E-value=7.9e-27  Score=219.40  Aligned_cols=268  Identities=16%  Similarity=0.033  Sum_probs=199.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHH----hCCCchH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQ---LCRVKARNSVAEKELSQLL-QAQSTFDSALKLY----DSGEYTK   73 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~----~~~~~~~   73 (409)
                      ++|++|+.+|+++++++|+++.++..++.++..   .++.++|+..+.+++...+ ........+..+.    ..+++++
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence            468999999999999999999999999988654   5677888888888887432 2333344444433    3578899


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----------------
Q 043837           74 PLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL----------------  137 (409)
Q Consensus        74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------------  137 (409)
                      |+.++++ ++..+|..+.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...                
T Consensus       232 a~~~~~~-al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~  310 (472)
T 4g1t_A          232 GEKLVEE-ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR  310 (472)
T ss_dssp             HHHHHHH-HHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred             HHHHHHH-HHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999998 89999999999999999999999999999999999999999999999999988643                


Q ss_pred             ---CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837          138 ---ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL  214 (409)
Q Consensus       138 ---~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  214 (409)
                         ..+++|+..+++++.++|.+..   ++..++.++...         +++++|+.+|++++++.|++.. ...++..+
T Consensus       311 ~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~lg~~~~~~---------~~~~~A~~~~~kaL~~~~~~~~-~~~~~~~~  377 (472)
T 4g1t_A          311 KLLELIGHAVAHLKKADEANDNLFR---VCSILASLHALA---------DQYEEAEYYFQKEFSKELTPVA-KQLLHLRY  377 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTCC---CHHHHHHHHHHT---------TCHHHHHHHHHHHHHSCCCHHH-HHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHhhcCCchhh---hhhhHHHHHHHh---------ccHHHHHHHHHHHHhcCCCChH-HHHHHHHH
Confidence               3467899999999999999888   888999998888         9999999999999999887432 33456666


Q ss_pred             HHH-HHHcCChhHHHHHHHHHHhcC------------------------hhcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837          215 CKV-LVKLGRGKDALSSCTEALNIN------------------------EELIEALVQRGEAKLLTEDWEGAVEDLKSAA  269 (409)
Q Consensus       215 a~~-~~~~~~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  269 (409)
                      |.+ +...+++++|+..|+++++++                        |+++.++..+|.+|..+|++++|+++|++|+
T Consensus       378 ~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL  457 (472)
T 4g1t_A          378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL  457 (472)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            654 457889999999999988764                        5566788889999999999999999999999


Q ss_pred             hhCCCcHHHHHHHH
Q 043837          270 QQSPQDMNIREALM  283 (409)
Q Consensus       270 ~~~p~~~~~~~~l~  283 (409)
                      ++.|.++.+...++
T Consensus       458 e~~~~~p~a~~~~G  471 (472)
T 4g1t_A          458 ESGSLIPSASSWNG  471 (472)
T ss_dssp             --------------
T ss_pred             hcCCCCCcHhhcCC
Confidence            99888887766553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=2e-26  Score=193.21  Aligned_cols=197  Identities=22%  Similarity=0.181  Sum_probs=176.6

Q ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837           87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA  166 (409)
Q Consensus        87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  166 (409)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..   ++..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---GYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHH
Confidence            7788999999999999999999999999999999999999999999999999999999999999999999998   8888


Q ss_pred             HHHHHHHHHH--HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837          167 LKNLLKKTKS--AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       167 l~~~~~~~~~--~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      ++.++.....  .......|++++|+..|+++++++|+    +..++.++|.++..+|++++|+..|+++++++ +++.+
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~  153 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR----YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI  153 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence            8888765410  01112238899999999999999999    77899999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      +..+|.++..+|++++|+..|+++++++|+++.+...+..+....+.
T Consensus       154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~  200 (217)
T 2pl2_A          154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK  200 (217)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999998888877655443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.95  E-value=3.7e-26  Score=186.58  Aligned_cols=174  Identities=22%  Similarity=0.253  Sum_probs=165.4

Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL  167 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l  167 (409)
                      .++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+.+++...|++..   ++..+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~   79 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---AYYIL   79 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---HHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---HHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999998   88888


Q ss_pred             HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHH
Q 043837          168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQ  247 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  247 (409)
                      +.++...         ++++.|+..+.+++.+.|+    +..++..+|.++..+|++++|+..|+++++++|+++.++..
T Consensus        80 ~~~~~~~---------~~~~~a~~~~~~a~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  146 (184)
T 3vtx_A           80 GSANFMI---------DEKQAAIDALQRAIALNTV----YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS  146 (184)
T ss_dssp             HHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHc---------CCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence            8888777         9999999999999999999    77799999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          248 RGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       248 la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      +|.+|..+|++++|+.+|+++++++|+++.
T Consensus       147 lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          147 IGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            999999999999999999999999998644

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-25  Score=192.56  Aligned_cols=226  Identities=17%  Similarity=0.175  Sum_probs=210.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCch
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ--------AQSTFDSALKLYDSGEYT   72 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~   72 (409)
                      .|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+.+.+...+.        ...++..+..+...|+++
T Consensus        18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   96 (258)
T 3uq3_A           18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK   96 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH
Confidence            489999999999999999 99999999999999999999999999999886554        577889999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      +|+..+.+ ++...|.        +.++...+++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++.
T Consensus        97 ~A~~~~~~-a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  167 (258)
T 3uq3_A           97 KTIEYYQK-SLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK  167 (258)
T ss_dssp             HHHHHHHH-HHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999999 8888876        56788889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837          153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT  232 (409)
Q Consensus       153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  232 (409)
                      .+|++..   ++..++.++...         |++++|+.+++++++..|+    ...++..+|.++...|++++|+..++
T Consensus       168 ~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          168 RAPEDAR---GYSNRAAALAKL---------MSFPEAIADCNKAIEKDPN----FVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             HCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCcccHH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999988   899999998888         9999999999999999999    77899999999999999999999999


Q ss_pred             HHHhcC------hhcHHHHHHHHHHH
Q 043837          233 EALNIN------EELIEALVQRGEAK  252 (409)
Q Consensus       233 ~al~~~------p~~~~~~~~la~~~  252 (409)
                      ++++++      |++..++..++.++
T Consensus       232 ~a~~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          232 AARTKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HHHHhChhhcCCCchHHHHHHHHHhh
Confidence            999999      88888887777653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.95  E-value=6.6e-26  Score=193.41  Aligned_cols=216  Identities=19%  Similarity=0.191  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      .+..++.+|..++..|++++|+.++++ ++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~-~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTK-AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHH-HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            455667788888889999999999998 8899999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                      +...|++++|+..+++++..+|.+..   ++..++.++...         |++++|+..++++++..|+    ...++..
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~  164 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGD---LFYMLGTVLVKL---------EQPKLALPYLQRAVELNEN----DTEARFQ  164 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHT---------SCHHHHHHHHHHHHHHCTT----CHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh---------ccHHHHHHHHHHHHHhCCc----cHHHHHH
Confidence            99999999999999999999999988   888888888877         9999999999999999998    6779999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          214 LCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       214 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      +|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|++..+...+..+.
T Consensus       165 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998877665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.94  E-value=2e-26  Score=225.26  Aligned_cols=243  Identities=16%  Similarity=0.140  Sum_probs=210.0

Q ss_pred             HhCCCchHHHHHHHHHHH--------hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           66 YDSGEYTKPLEYIDKVVL--------VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      +..+++++|+..+++ ++        ..+|.+..+++.+|.++...|++++|+..|+++++.+|++..+|+.+|.++..+
T Consensus       402 ~~~~~~~~A~~~~~~-al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRA-ARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHH-HHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHH-hhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            778999999999999 77        889999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHH
Q 043837          138 ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKV  217 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~  217 (409)
                      |++++|+..|+++++++|++..   ++.+++.++...         |++++ +..|+++++++|+    +..+++++|.+
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~---~~~~lg~~~~~~---------g~~~~-~~~~~~al~~~P~----~~~a~~~lg~~  543 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELA---PKLALAATAELA---------GNTDE-HKFYQTVWSTNDG----VISAAFGLARA  543 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHH---------TCCCT-TCHHHHHHHHCTT----CHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHc---------CChHH-HHHHHHHHHhCCc----hHHHHHHHHHH
Confidence            9999999999999999999998   999999999988         99999 9999999999999    77799999999


Q ss_pred             HHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccC--------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          218 LVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTED--------WEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      +..+|++++|+..|+++++++|++..++.++|.++...++        +++|.+.+.......|....+...+......+
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~  623 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLGGALDW  623 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987555        55555544444333444455555555555556


Q ss_pred             hhcchhhhhhhhcccccCCH--HHHHHHHHHHHhccCCC
Q 043837          290 KMSKRKDWYKILGVSKTASI--SEIKRAYKKLALQWHPD  326 (409)
Q Consensus       290 ~~~~~~~~~~~l~~~~~~~~--~e~~~~y~~~a~~~~~d  326 (409)
                      ......++|++||+......  .+++++||+++...+++
T Consensus       624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~  662 (681)
T 2pzi_A          624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ  662 (681)
T ss_dssp             HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH
T ss_pred             HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh
Confidence            66667779999999766655  77999999998876544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.94  E-value=5.5e-25  Score=202.32  Aligned_cols=280  Identities=17%  Similarity=0.116  Sum_probs=232.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHhCC
Q 043837            1 MKHYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQ-------LLQAQSTFDSALKLYDSG   69 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~~~~~~~~~~a~~~~~~~   69 (409)
                      +|++++|+..|+++++.+|.++    .++..+|.++...|++++|+..+.+++..       ..........+..+...|
T Consensus        22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            4899999999999999999984    67899999999999999999999988774       234667788999999999


Q ss_pred             CchHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh----
Q 043837           70 EYTKPLEYIDKVVLVFSPAC------SKAKLLKVKLLLAAKD--------------------YASAISETGYLLKE----  119 (409)
Q Consensus        70 ~~~~A~~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~al~~----  119 (409)
                      ++++|+.++.+ ++...|..      ..++..+|.++...|+                    +++|+..+.+++.+    
T Consensus       102 ~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~  180 (406)
T 3sf4_A          102 NFDEAIVCCQR-HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL  180 (406)
T ss_dssp             CHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHH-HHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998 66665432      5689999999999999                    99999999999887    


Q ss_pred             --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH
Q 043837          120 --DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK  194 (409)
Q Consensus       120 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~  194 (409)
                        .|....++..+|.++...|++++|+.++++++.+.+.   ......++..++.++...         |++++|+.+++
T Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~  251 (406)
T 3sf4_A          181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL---------GEFETASEYYK  251 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc---------CChHHHHHHHH
Confidence              3334568899999999999999999999999987543   333444677777777766         99999999999


Q ss_pred             HHHccCCCC--ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHH
Q 043837          195 AALALDPNH--TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLK  266 (409)
Q Consensus       195 ~al~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~  266 (409)
                      +++.+.|..  ......++..+|.++...|++++|+.++++++.+.+..      ..++..+|.++..+|++++|+.+++
T Consensus       252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  331 (406)
T 3sf4_A          252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE  331 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999887652  22237789999999999999999999999999885543      7789999999999999999999999


Q ss_pred             HHHhhCCCc------HHHHHHHHHHHHHHh
Q 043837          267 SAAQQSPQD------MNIREALMRAEKALK  290 (409)
Q Consensus       267 ~al~~~p~~------~~~~~~l~~~~~~~~  290 (409)
                      +++++.+..      ..+...+..+...+.
T Consensus       332 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  361 (406)
T 3sf4_A          332 KHLEISREVGDKSGELTARLNLSDLQMVLG  361 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence            999985433      334445555554444

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.94  E-value=2.6e-24  Score=184.72  Aligned_cols=211  Identities=18%  Similarity=0.108  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      ...++..|..++..|++++|+.++++ ++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRK-ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            56677888888899999999999998 88899999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837          135 YYLADHDVAQRHFQKGLR--LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL  212 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  212 (409)
                      ...|++++|+.++++++.  ..|.+..   ++..++.++...         |++++|+.+++++++..|.    ...++.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~----~~~~~~  179 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSR---VFENLGLVSLQM---------KKPAQAKEYFEKSLRLNRN----QPSVAL  179 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCSC----CHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCcc----cHHHHH
Confidence            999999999999999999  7777776   888888888877         9999999999999999998    677999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          213 GLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       213 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                      .+|.++...|++++|+..++++++..|.+..++..++.++...|++++|...+++++++.|+++.+...+
T Consensus       180 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998876543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.94  E-value=7.2e-25  Score=202.20  Aligned_cols=266  Identities=20%  Similarity=0.137  Sum_probs=228.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHhCC
Q 043837            1 MKHYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQ-------LLQAQSTFDSALKLYDSG   69 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~~~~~~~~~~a~~~~~~~   69 (409)
                      .|++++|+..|+++++.+|+++    .++..+|.++...|++++|+..+.+++..       ......++..+..+...|
T Consensus        61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  140 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG  140 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence            4899999999999999999987    58999999999999999999999998875       455677888999999999


Q ss_pred             CchHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHhhC------
Q 043837           70 EYTKPLEYIDKVVLVF------SPACSKAKLLKVKLLLAAKD-----------------YASAISETGYLLKED------  120 (409)
Q Consensus        70 ~~~~A~~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~-----------------~~~A~~~~~~al~~~------  120 (409)
                      ++++|+.++.+ ++..      .|....++..+|.++...|+                 +++|+..+++++++.      
T Consensus       141 ~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~  219 (411)
T 4a1s_A          141 RFDEAAICCER-HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR  219 (411)
T ss_dssp             CHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence            99999999998 6666      56677899999999999999                 999999999998864      


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Q 043837          121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH---SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAAL  197 (409)
Q Consensus       121 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  197 (409)
                      +....++..+|.++...|++++|+.++++++.+.+..   .....++..++.++...         |++++|+.++++++
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al  290 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL---------GQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC---------cCHHHHHHHHHHHH
Confidence            2344588999999999999999999999999976543   22333566666666555         99999999999999


Q ss_pred             ccCCCCc--cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh------cHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837          198 ALDPNHT--AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE------LIEALVQRGEAKLLTEDWEGAVEDLKSAA  269 (409)
Q Consensus       198 ~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al  269 (409)
                      .+.+...  .....++..+|.++...|++++|+.++++++.+.+.      ...++..+|.++..+|++++|+.++++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9877422  124678999999999999999999999999988553      35689999999999999999999999999


Q ss_pred             hhCCCcH
Q 043837          270 QQSPQDM  276 (409)
Q Consensus       270 ~~~p~~~  276 (409)
                      ++.+...
T Consensus       371 ~~~~~~~  377 (411)
T 4a1s_A          371 QLAXXXX  377 (411)
T ss_dssp             HHCCHHH
T ss_pred             HHHhhcc
Confidence            9987643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.94  E-value=8.2e-25  Score=185.02  Aligned_cols=187  Identities=16%  Similarity=0.126  Sum_probs=104.6

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDE-NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL  167 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l  167 (409)
                      ++..++.+|.+++..|++++|+..|+++++++| .+..+++.+|.++..+|++++|+.+|++++..+|++..   ++..+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l   82 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN---AYIGK   82 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH---HHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH---HHHHH
Confidence            344455555555555555555555555555554 44444445555555555555555555555555555444   44444


Q ss_pred             HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh--cH
Q 043837          168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH---NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE--LI  242 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~  242 (409)
                      +.++...         |++++|+..+++++++.|+++..   ...++..+|.++...|++++|+..|+++++++|+  ++
T Consensus        83 ~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  153 (228)
T 4i17_A           83 SAAYRDM---------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT  153 (228)
T ss_dssp             HHHHHHT---------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHHc---------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH
Confidence            4444444         55555555555555555542210   0133455555555555555555555555555555  45


Q ss_pred             HHHHHHHHHHHhccCH---------------------------HHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          243 EALVQRGEAKLLTEDW---------------------------EGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~---------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      .++..+|.++...|+.                           ++|+.+|+++++++|++..+...+..+..
T Consensus       154 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          154 DALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            5555555555555444                           99999999999999999998888877654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.94  E-value=1.2e-24  Score=194.42  Aligned_cols=265  Identities=17%  Similarity=0.106  Sum_probs=222.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhCC
Q 043837            1 MKHYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDSG   69 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~   69 (409)
                      .|++++|+..|+++++.+|+++    .++..+|.++...|++++|+..+.+++...       .........+..+...|
T Consensus        18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            4899999999999999999984    678899999999999999999999887642       33566788899999999


Q ss_pred             CchHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh----
Q 043837           70 EYTKPLEYIDKVVLVFSPAC------SKAKLLKVKLLLAAKD--------------------YASAISETGYLLKE----  119 (409)
Q Consensus        70 ~~~~A~~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~al~~----  119 (409)
                      ++++|+..+.+ ++...|..      ..++..+|.++...|+                    +++|+..+++++.+    
T Consensus        98 ~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~  176 (338)
T 3ro2_A           98 NFDEAIVCCQR-HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL  176 (338)
T ss_dssp             CHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998 66554332      4589999999999999                    99999999999876    


Q ss_pred             --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH
Q 043837          120 --DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK  194 (409)
Q Consensus       120 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~  194 (409)
                        .+....++..+|.++...|++++|+.++++++.+.+.   ......++..++.++...         |++++|+.+++
T Consensus       177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~  247 (338)
T 3ro2_A          177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL---------GEFETASEYYK  247 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHH
Confidence              2334558899999999999999999999999987543   333444777788887777         99999999999


Q ss_pred             HHHccCCCC--ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHH
Q 043837          195 AALALDPNH--TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLK  266 (409)
Q Consensus       195 ~al~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~  266 (409)
                      +++.+.+..  +.....++..+|.++...|++++|+.++++++.+.+..      ..++..+|.++...|++++|+.+++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            999876642  22247788999999999999999999999999876543      5688999999999999999999999


Q ss_pred             HHHhhCCCc
Q 043837          267 SAAQQSPQD  275 (409)
Q Consensus       267 ~al~~~p~~  275 (409)
                      +++++.++.
T Consensus       328 ~a~~~~~~~  336 (338)
T 3ro2_A          328 KHLEISREV  336 (338)
T ss_dssp             HHHHC----
T ss_pred             HHHHHHHhh
Confidence            999987753

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.94  E-value=1e-23  Score=177.36  Aligned_cols=210  Identities=16%  Similarity=0.073  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY  135 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  135 (409)
                      ..++..+..++..|++++|+..+.+ ++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIED-ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            3445555556666667777777777 788899999999999999999999999999999999999999999999999999


Q ss_pred             hc-CChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837          136 YL-ADHDVAQRHFQKGLR--LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL  212 (409)
Q Consensus       136 ~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  212 (409)
                      .. |++++|+..+++++.  ..|.+..   ++..++.++...         |++++|+..++++++..|+    +..++.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~  151 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYI---ANLNKGICSAKQ---------GQFGLAEAYLKRSLAAQPQ----FPPAFK  151 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CchHHH
Confidence            99 999999999999999  5555555   888888888877         9999999999999999998    677999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhcCh-hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          213 GLCKVLVKLGRGKDALSSCTEALNINE-ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       213 ~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                      .+|.++...|++++|+..++++++..| .+..++..++.++...|++++|..+++.+++..|+++.+...+
T Consensus       152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            999999999999999999999999999 9999999999999999999999999999999999998876554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.93  E-value=1.6e-23  Score=182.23  Aligned_cols=232  Identities=15%  Similarity=0.137  Sum_probs=208.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHhhCCCcHHHH
Q 043837           18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYTKPLEYIDKVVLVFSPACSKAK   93 (409)
Q Consensus        18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~p~~~~~~   93 (409)
                      +|+++.+++.+|.++...+++++|+..+.+++. .......+..+..+..    .+++++|+.+|.+ ++..+  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~-a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAK-ACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH-HHHCC--CHHHH
Confidence            588999999999999999999999999999888 4456778889999999    9999999999999 66654  78999


Q ss_pred             HHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837           94 LLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQRHFQKGLRLDPEHSELKKAYF  165 (409)
Q Consensus        94 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~  165 (409)
                      +.+|.++..    .+++++|+..|+++++.+  ++.+++.+|.+|..    .+++++|+.+|+++++..  +..   ++.
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~---a~~  150 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGD---GCT  150 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHH---HHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHH---HHH
Confidence            999999999    999999999999999974  89999999999999    999999999999999976  444   788


Q ss_pred             HHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhc
Q 043837          166 ALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEALNI  237 (409)
Q Consensus       166 ~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~  237 (409)
                      .++.++..    .         +++++|+.+|+++++..      ...++.++|.+|..    .+++++|+.+++++++.
T Consensus       151 ~lg~~~~~~~~~~---------~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  215 (273)
T 1ouv_A          151 ILGSLYDAGRGTP---------KDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  215 (273)
T ss_dssp             HHHHHHHHTSSSC---------CCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCC---------CCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence            88888876    5         99999999999999873      35689999999999    99999999999999998


Q ss_pred             ChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCCcHH
Q 043837          238 NEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       238 ~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      .|  +.++..+|.+|..    .+++++|+.+|++++++.|++..
T Consensus       216 ~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          216 EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            66  7899999999999    99999999999999999987543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.93  E-value=7.7e-24  Score=185.45  Aligned_cols=276  Identities=15%  Similarity=0.119  Sum_probs=220.8

Q ss_pred             HHHHHHcCChHHHhHHHHHHHHHH-H-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCH
Q 043837           29 GSVLRQLCRVKARNSVAEKELSQL-L-QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY  106 (409)
Q Consensus        29 a~~~~~~g~~~~A~~~~~~~l~~~-~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~  106 (409)
                      .+-.+..|+++.|+..+.+..... . .....+..+..++..|+++.|+..++.    .+|....++..++..+...+++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence            345678999999999887654422 2 234557778899999999999998865    2666788899999999999999


Q ss_pred             HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC
Q 043837          107 ASAISETGYLLKE--DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG  184 (409)
Q Consensus       107 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (409)
                      ++|++.+++++..  +|+++.+++.+|.++...|++++|+..+++     |++..   ++..++.++..+         |
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~---~~~~l~~~~~~~---------g  144 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE---CMAMTVQILLKL---------D  144 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH---HHHHHHHHHHHT---------T
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH---HHHHHHHHHHHC---------C
Confidence            9999999999976  699999999999999999999999999998     78887   888899988888         9


Q ss_pred             CHHHHHHHHHHHHccCCCCccchHHHHHHHH--HHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHH
Q 043837          185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLC--KVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV  262 (409)
Q Consensus       185 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  262 (409)
                      ++++|+..++++++.+|++    .......+  .++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+
T Consensus       145 ~~~~A~~~l~~~~~~~p~~----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          145 RLDLARKELKKMQDQDEDA----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999984    32322222  33345589999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC-CCchHHHHHHHHH
Q 043837          263 EDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-VDNREEAENKFRE  341 (409)
Q Consensus       263 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~-~~~~~~a~~~~~~  341 (409)
                      ..|+++++++|+++++...+..+...+++.                .+.+.+.+++ +...+|+.. .....+.+..|.+
T Consensus       221 ~~l~~al~~~p~~~~~l~~l~~~~~~~g~~----------------~eaa~~~~~~-~~~~~P~~~~~~d~~~~~~~fd~  283 (291)
T 3mkr_A          221 GVLQEALDKDSGHPETLINLVVLSQHLGKP----------------PEVTNRYLSQ-LKDAHRSHPFIKEYRAKENDFDR  283 (291)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCC----------------HHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHH
Confidence            999999999999999998888777665541                2223333343 566677652 2233455556666


Q ss_pred             HHHHH
Q 043837          342 IAAAY  346 (409)
Q Consensus       342 i~~ay  346 (409)
                      +...|
T Consensus       284 ~~~~~  288 (291)
T 3mkr_A          284 LVLQY  288 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            55554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.93  E-value=5.2e-25  Score=191.51  Aligned_cols=202  Identities=16%  Similarity=0.091  Sum_probs=164.3

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      ++..|..++..|++++|+..|.+ ++..+|.++.++..+|.++...|++++|+.+|+++++++|.++.++..+|.++...
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A           46 LYERGVLYDSLGLRALARNDFSQ-ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence            33444444445556666666666 77788999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHH
Q 043837          138 ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKV  217 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~  217 (409)
                      |++++|+.++++++.++|++..   ....+... ...         +++++|+..+.+++...|.+.    .. ..++.+
T Consensus       125 g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~-~~~---------~~~~~A~~~~~~~~~~~~~~~----~~-~~~~~~  186 (275)
T 1xnf_A          125 GRDKLAQDDLLAFYQDDPNDPF---RSLWLYLA-EQK---------LDEKQAKEVLKQHFEKSDKEQ----WG-WNIVEF  186 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHH---HHHHHHHH-HHH---------HCHHHHHHHHHHHHHHSCCCS----TH-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCChH---HHHHHHHH-HHh---------cCHHHHHHHHHHHHhcCCcch----HH-HHHHHH
Confidence            9999999999999999998875   33333322 333         899999999999999888743    23 447777


Q ss_pred             HHHcCChhHHHHHHHHHHhcChh----cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837          218 LVKLGRGKDALSSCTEALNINEE----LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI  278 (409)
Q Consensus       218 ~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  278 (409)
                      +...++.++|+..+.+++...|.    ++.++..+|.++...|++++|+..|+++++++|++...
T Consensus       187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence            88888889999999999888774    37889999999999999999999999999999976553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=6.4e-24  Score=173.20  Aligned_cols=171  Identities=19%  Similarity=0.248  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY  135 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  135 (409)
                      ..++..|..+..+|++++|+..|++ +++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++.
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKK-VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            3445566666667777888888888 899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC  215 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la  215 (409)
                      ..++++.|+..+.+++.++|++..   ++..++.++...         |++++|+..|+++++++|+    ++.++.++|
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~---~~~~lg~~~~~~---------g~~~~A~~~~~~~l~~~p~----~~~~~~~lg  148 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYAD---AYYKLGLVYDSM---------GEHDKAIEAYEKTISIKPG----FIRAYQSIG  148 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchH---HHHHHHHHHHHh---------CCchhHHHHHHHHHHhcch----hhhHHHHHH
Confidence            999999999999999999999998   899999999888         9999999999999999999    778999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837          216 KVLVKLGRGKDALSSCTEALNINEELIE  243 (409)
Q Consensus       216 ~~~~~~~~~~~A~~~~~~al~~~p~~~~  243 (409)
                      .++..+|++++|+.+|+++++++|+++.
T Consensus       149 ~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          149 LAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999998754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.93  E-value=4.6e-24  Score=200.00  Aligned_cols=204  Identities=14%  Similarity=0.066  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEY-TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      +..++.+|..++..+++ ++|+.+|.+ +++.+|.++.++..+|.++...|++++|+.+|+++++++|+ ..++..+|.+
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~-al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~  179 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSK-AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV  179 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence            34445555556666777 788888888 88999999999999999999999999999999999999999 7999999999


Q ss_pred             HHhc---------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC---
Q 043837          134 YYYL---------ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP---  201 (409)
Q Consensus       134 ~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---  201 (409)
                      +..+         |++++|+..|++++.++|++..   +|..++.++...-.... ...+++++|+..|+++++++|   
T Consensus       180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~  255 (474)
T 4abn_A          180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR---SWYILGNAYLSLYFNTG-QNPKISQQALSAYAQAEKVDRKAS  255 (474)
T ss_dssp             HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHhCCCcc
Confidence            9999         9999999999999999999998   89999988865400000 012679999999999999999   


Q ss_pred             CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837          202 NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA  268 (409)
Q Consensus       202 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  268 (409)
                      +    ++.+++++|.++..+|++++|+..|+++++++|+++.++..++.++..+|++++|+..+.+.
T Consensus       256 ~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          256 S----NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             G----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             c----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6    78899999999999999999999999999999999999999999999999999999876543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.93  E-value=1.9e-23  Score=184.95  Aligned_cols=231  Identities=10%  Similarity=0.032  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------hHHHHH
Q 043837            5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEY-------TKPLEY   77 (409)
Q Consensus         5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~   77 (409)
                      ++|+..|++++..+|+++.+|+.+|.++...++.                          +...|++       ++|+..
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~--------------------------l~~~g~~~~~~~~~~~A~~~   86 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL--------------------------LAEKGDMNNAKLFSDEAANI   86 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------------HHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh--------------------------hhhccchhhcccchHHHHHH
Confidence            6899999999999999999999999988654220                          2234554       889999


Q ss_pred             HHHHHHh-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837           78 IDKVVLV-FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE-ALLHRGRAYYYLADHDVAQRHFQKGLRLDP  155 (409)
Q Consensus        78 ~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  155 (409)
                      |++ ++. .+|.+..+|..+|.++...|++++|+..|+++++++|.++. +|..++.++...|++++|+..|+++++..|
T Consensus        87 ~~r-Al~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A           87 YER-AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHH-HHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHH-HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            988 787 79999999999999999999999999999999999999887 999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      .+..   ++...+.+...        ..|++++|+..|+++++..|+    +..+|..++.++...|++++|+..|++++
T Consensus       166 ~~~~---~~~~~a~~~~~--------~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al  230 (308)
T 2ond_A          166 TRHH---VYVTAALMEYY--------CSKDKSVAFKIFELGLKKYGD----IPEYVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             CCTH---HHHHHHHHHHH--------TSCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCHH---HHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8876   55544333211        139999999999999999999    67899999999999999999999999999


Q ss_pred             hc---Chh-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          236 NI---NEE-LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       236 ~~---~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      ..   .|+ ...+|..++..+...|++++|...++++++..|++..
T Consensus       231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~  276 (308)
T 2ond_A          231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence            95   664 7889999999999999999999999999999998654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.93  E-value=2.1e-24  Score=202.27  Aligned_cols=212  Identities=19%  Similarity=0.186  Sum_probs=192.2

Q ss_pred             chHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837           71 YTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY-ASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQK  149 (409)
Q Consensus        71 ~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  149 (409)
                      +++++..+.+ +....|..+.+++.+|.++...|++ ++|+..|+++++++|+++.+|+.+|.+|...|++++|+.+|++
T Consensus        84 ~~~al~~l~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEE-VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHH-HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5667777776 7788899999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc--------
Q 043837          150 GLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL--------  221 (409)
Q Consensus       150 al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~--------  221 (409)
                      ++.++|+ ..   ++..++.++.....+......|++++|+..|+++++++|+    +..+|.++|.++...        
T Consensus       163 al~~~p~-~~---~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~~~  234 (474)
T 4abn_A          163 ALTHCKN-KV---SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL----DGRSWYILGNAYLSLYFNTGQNP  234 (474)
T ss_dssp             HHTTCCC-HH---HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHhhCCC-HH---HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999 45   8888888775432222233338999999999999999999    778999999999999        


Q ss_pred             CChhHHHHHHHHHHhcCh---hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          222 GRGKDALSSCTEALNINE---ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       222 ~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      |++++|+.+|+++++++|   +++.+++.+|.++..+|++++|+..|+++++++|++..++..+..+...+++
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~  307 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR  307 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999   9999999999999999999999999999999999999999998888777664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.93  E-value=7.8e-25  Score=213.00  Aligned_cols=174  Identities=16%  Similarity=0.190  Sum_probs=165.3

Q ss_pred             hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837           85 FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY  164 (409)
Q Consensus        85 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  164 (409)
                      ..|+++.++.++|.++..+|++++|+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..   ++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---a~   80 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---AY   80 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Confidence            368899999999999999999999999999999999999999999999999999999999999999999999998   99


Q ss_pred             HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837          165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      .++|.++..+         |++++|+..|+++++++|+    +..++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus        81 ~nLg~~l~~~---------g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a  147 (723)
T 4gyw_A           81 SNMGNTLKEM---------QDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA  147 (723)
T ss_dssp             HHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            9999999888         9999999999999999999    78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      +.++|.++..++++++|.+.+++++++.|+
T Consensus       148 ~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          148 YCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            999999999999999999999999987655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.92  E-value=6e-24  Score=184.76  Aligned_cols=246  Identities=15%  Similarity=0.086  Sum_probs=210.8

Q ss_pred             CChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHH
Q 043837            2 KHYSEALDDLNTAIEA----DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLE   76 (409)
Q Consensus         2 g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~   76 (409)
                      +++++|+..|+++++.    +|.++.+++.+|.++...|++++|+..+.+++...+ ....++..|..+...|++++|+.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~   98 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   98 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence            5789999999999998    356788999999999999999999999999988543 46778889999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 043837           77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE  156 (409)
Q Consensus        77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  156 (409)
                      +|.+ ++..+|.++.++..+|.++...|++++|+..++++++++|++......++.+ ...|++++|+..+++++...|+
T Consensus        99 ~~~~-al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~  176 (275)
T 1xnf_A           99 AFDS-VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDK  176 (275)
T ss_dssp             HHHH-HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCC
T ss_pred             HHHH-HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCc
Confidence            9999 8999999999999999999999999999999999999999998777666655 6679999999999999999988


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          157 HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      +..   .+. ++.++         +..++.++|+..+.+++...|........++..+|.++...|++++|+..|++++.
T Consensus       177 ~~~---~~~-~~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  243 (275)
T 1xnf_A          177 EQW---GWN-IVEFY---------LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  243 (275)
T ss_dssp             CST---HHH-HHHHH---------TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             chH---HHH-HHHHH---------HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            765   332 33333         33488999999999999988863322478999999999999999999999999999


Q ss_pred             cChhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837          237 INEELIEALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~  265 (409)
                      ++|++...   .+.++..++++++|++.+
T Consensus       244 ~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          244 NNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             TCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             CCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            99977544   377889999999999887

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.92  E-value=4.8e-24  Score=181.81  Aligned_cols=219  Identities=17%  Similarity=0.147  Sum_probs=180.5

Q ss_pred             CHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837           21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL   99 (409)
Q Consensus        21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~   99 (409)
                      .+.+++.+|.++...|++++|+..+.+.+.. +......+..+..+...|++++|+..+.+ ++...|.+..++..+|.+
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDK-ALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCcchHHHHHHHHH
Confidence            3567888899999999999999888888774 33466777888889999999999999998 889999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 043837          100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED  179 (409)
Q Consensus       100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~  179 (409)
                      +...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|++..   ++..++.++...     
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~-----  172 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE---ARFQFGMCLANE-----  172 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH-----
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHc-----
Confidence            999999999999999999999999999999999999999999999999999999999988   889999998888     


Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837          180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE  256 (409)
Q Consensus       180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  256 (409)
                          |++++|+..++++++..|+    ...++..+|.++...|++++|+.+++++++++|++..++..++.+....+
T Consensus       173 ----~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          173 ----GMLDEALSQFAAVTEQDPG----HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             ----TCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             ----CCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence                9999999999999999998    67799999999999999999999999999999999999998887765443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.92  E-value=4.5e-23  Score=178.13  Aligned_cols=202  Identities=15%  Similarity=0.119  Sum_probs=172.5

Q ss_pred             HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ...+|.++..++.+|.+++..|++++|+..|+++++.+|++   +.+++.+|.+++.+|++++|+..|++++...|+++.
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            44578899999999999999999999999999999999999   899999999999999999999999999999998766


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH--------------HHHHHHHHHcCChh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY--------------LGLCKVLVKLGRGK  225 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~la~~~~~~~~~~  225 (409)
                      ...+++.++.++..... ......|++++|+..|+++++..|+++. ...++              +.+|.+|...|+++
T Consensus        88 ~~~a~~~lg~~~~~~~~-~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  165 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSP-PYELDQTDTRKAIEAFQLFIDRYPNHEL-VDDATQKIRELRAKLARKQYEAARLYERRELYE  165 (261)
T ss_dssp             HHHHHHHHHHHHHHHCC-CTTSCCHHHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHHHHCcCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence            66688999988877000 0000029999999999999999998654 23333              88999999999999


Q ss_pred             HHHHHHHHHHhcChh---cHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          226 DALSSCTEALNINEE---LIEALVQRGEAKLLT----------EDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       226 ~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      +|+..|+++++..|+   .+.+++.+|.+|..+          |++++|+..|+++++..|+++.+......+.
T Consensus       166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  239 (261)
T 3qky_A          166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT  239 (261)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            999999999999998   678999999999987          9999999999999999999976655544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=8.4e-23  Score=175.27  Aligned_cols=216  Identities=15%  Similarity=0.035  Sum_probs=198.5

Q ss_pred             HhCCCC-HHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHH
Q 043837           16 EADPTL-SEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAK   93 (409)
Q Consensus        16 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~   93 (409)
                      ..+|.. +.+++.+|.++...|++++|+..+.+.+... .....++..+..+...|++++|+..+.+ ++...|.+..++
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~  108 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK-ALASDSRNARVL  108 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCcHHHH
Confidence            346665 7889999999999999999999999988753 3466778899999999999999999999 899999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837           94 LLKVKLLLAAKDYASAISETGYLLK--EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus        94 ~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      ..+|.++...|++++|+..+++++.  ..|.+..++..+|.++...|++++|+.++++++..+|.+..   ++..++.++
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~  185 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS---VALEMADLL  185 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH---HHHHHHHHH
Confidence            9999999999999999999999999  88989999999999999999999999999999999999988   888898888


Q ss_pred             HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHH
Q 043837          172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR  248 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  248 (409)
                      ...         |++++|+..++++++..|.    ...++..++.++...|++++|+.+++++++..|+++.+...+
T Consensus       186 ~~~---------g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          186 YKE---------REYVPARQYYDLFAQGGGQ----NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHT---------TCHHHHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHc---------CCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            877         9999999999999999998    677899999999999999999999999999999998776543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.91  E-value=4e-22  Score=167.61  Aligned_cols=215  Identities=14%  Similarity=-0.010  Sum_probs=197.1

Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHH
Q 043837           17 ADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLL   95 (409)
Q Consensus        17 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~   95 (409)
                      .+|+++.++..+|.++...|++++|+..+.+.+...+ ....++..+..+...|++++|+.++.+ ++...|.+..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ-ALSIKPDSAEINNN   81 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCChHHHHH
Confidence            4688899999999999999999999999999887543 356778889999999999999999999 88999999999999


Q ss_pred             HHHHHHHc-cCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837           96 KVKLLLAA-KDYASAISETGYLLK--EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK  172 (409)
Q Consensus        96 ~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~  172 (409)
                      +|.++... |++++|+..++++++  .+|.+..++..+|.++...|++++|+..+++++..+|++..   ++..++.++.
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~  158 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP---AFKELARTKM  158 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch---HHHHHHHHHH
Confidence            99999999 999999999999999  67777899999999999999999999999999999999988   8999999988


Q ss_pred             HHHHHhhHHhcCCHHHHHHHHHHHHccCC-CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHH
Q 043837          173 KTKSAEDNVSKGKLRVAVEDFKAALALDP-NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR  248 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  248 (409)
                      ..         |++++|+..++++++..| .    ....+..++.++...|++++|..+++.+++.+|+++.+...+
T Consensus       159 ~~---------~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          159 LA---------GQLGDADYYFKKYQSRVEVL----QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HH---------TCHHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             Hc---------CCHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            88         999999999999999999 7    666888999999999999999999999999999998876554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.8e-22  Score=185.53  Aligned_cols=263  Identities=19%  Similarity=0.116  Sum_probs=219.2

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh------CC
Q 043837           19 PTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF------SP   87 (409)
Q Consensus        19 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p   87 (409)
                      +....+++.+|.++...|++++|+..+.+++...+     ....++..+..++..|++++|+.++++ ++..      .|
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH-DLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHhccccH
Confidence            34567889999999999999999999999988432     246678899999999999999999998 5544      34


Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCC--------------------hH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLHRGRAYYYLAD--------------------HD  141 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~  141 (409)
                      ....++..+|.++...|++++|+..+++++++.|..      ..++..+|.++...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            557889999999999999999999999999987643      4488999999999999                    99


Q ss_pred             HHHHHHHHHHccC---CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--cchHHHHHHHHH
Q 043837          142 VAQRHFQKGLRLD---PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--AHNVHLYLGLCK  216 (409)
Q Consensus       142 ~A~~~~~~al~~~---p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~la~  216 (409)
                      +|+.++++++.+.   ++......++..++.++...         |++++|+.++++++++.+...  .....++.++|.
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  235 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL---------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN  235 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            9999999998762   33444445788888888888         999999999999999866532  224568999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------HHHHHHHHH
Q 043837          217 VLVKLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD------MNIREALMR  284 (409)
Q Consensus       217 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~  284 (409)
                      ++...|++++|+.++++++.+.|..      ..++..+|.++...|++++|+.++++++++.+..      ..+...++.
T Consensus       236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  315 (406)
T 3sf4_A          236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN  315 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            9999999999999999999987765      7889999999999999999999999999986554      335555666


Q ss_pred             HHHHHhh
Q 043837          285 AEKALKM  291 (409)
Q Consensus       285 ~~~~~~~  291 (409)
                      +....+.
T Consensus       316 ~~~~~g~  322 (406)
T 3sf4_A          316 AYTALGN  322 (406)
T ss_dssp             HHHHHTC
T ss_pred             HHHHcCC
Confidence            6555544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=7.3e-22  Score=166.83  Aligned_cols=213  Identities=12%  Similarity=0.103  Sum_probs=177.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHH
Q 043837           18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLL   95 (409)
Q Consensus        18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~   95 (409)
                      .|.++.+++.+|.++...|++++|+..+.+++...  ......+..|..++..|++++|+..+++ ++..+|.++.++..
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~   81 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDI-AIKKNYNLANAYIG   81 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTCSHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHH-HHHhCcchHHHHHH
Confidence            35667899999999999999999999999988865  4566777789999999999999999998 88999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--cHHHHHHHHH
Q 043837           96 KVKLLLAAKDYASAISETGYLLKEDENNL-------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPE--HSELKKAYFA  166 (409)
Q Consensus        96 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~  166 (409)
                      +|.++..+|++++|+..++++++++|+++       .++..+|.++..+|++++|+..|+++++++|+  +..   ++..
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~~  158 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD---ALYS  158 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH---HHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH---HHHH
Confidence            99999999999999999999999999988       66889999999999999999999999999998  777   8888


Q ss_pred             HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837          167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV  246 (409)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  246 (409)
                      ++.++...              +...++++..+.+.+    ...  ..+......+.+++|+.+++++++++|+++.+..
T Consensus       159 l~~~~~~~--------------~~~~~~~a~~~~~~~----~~~--~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  218 (228)
T 4i17_A          159 LGVLFYNN--------------GADVLRKATPLASSN----KEK--YASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ  218 (228)
T ss_dssp             HHHHHHHH--------------HHHHHHHHGGGTTTC----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHH--------------HHHHHHHHHhcccCC----HHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence            88888655              344567777776663    222  2334455567789999999999999999999998


Q ss_pred             HHHHHHHh
Q 043837          247 QRGEAKLL  254 (409)
Q Consensus       247 ~la~~~~~  254 (409)
                      .++.+...
T Consensus       219 ~l~~i~~~  226 (228)
T 4i17_A          219 MQDQVKAM  226 (228)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            88877543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.91  E-value=9.9e-23  Score=187.86  Aligned_cols=246  Identities=16%  Similarity=0.127  Sum_probs=209.4

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh------CCC
Q 043837           20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF------SPA   88 (409)
Q Consensus        20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p~   88 (409)
                      .....++.+|.++...|++++|+..+.+++...+     ....++..+..++..|++++|+.++++ ++..      .|.
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~  124 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH-DLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHccCchH
Confidence            3456678899999999999999999999988422     235678899999999999999999999 6665      567


Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhcCC-----------------hHHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKE------DENNLEALLHRGRAYYYLAD-----------------HDVAQR  145 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~A~~  145 (409)
                      ...++..+|.++...|++++|+..+++++++      .|....++..+|.++...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            7889999999999999999999999999998      55667789999999999999                 999999


Q ss_pred             HHHHHHccC---CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--cchHHHHHHHHHHHHH
Q 043837          146 HFQKGLRLD---PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--AHNVHLYLGLCKVLVK  220 (409)
Q Consensus       146 ~~~~al~~~---p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~la~~~~~  220 (409)
                      ++++++.+.   ++......++..++.++...         |++++|+.++++++++.+...  .....++.++|.++..
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  275 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLL---------GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF  275 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            999998764   23333444777777777776         999999999999999877522  1234588999999999


Q ss_pred             cCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          221 LGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       221 ~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      .|++++|+.++++++.+.+..      ..++..+|.++...|++++|+.++++++++.++.
T Consensus       276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            999999999999999987754      7889999999999999999999999999986543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.90  E-value=2.2e-21  Score=168.85  Aligned_cols=233  Identities=12%  Similarity=0.043  Sum_probs=208.4

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837            4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL   83 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   83 (409)
                      .++|+.+++++|.++|++..+|..++.++..++.                               .++++++.+++. ++
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-------------------------------~~~~eeL~~~~~-~L   96 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPN-------------------------------RNLYDELDWCEE-IA   96 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-------------------------------SCHHHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-------------------------------ccHHHHHHHHHH-HH
Confidence            3689999999999999999999999999887762                               256677777777 88


Q ss_pred             hhCCCcHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHccC
Q 043837           84 VFSPACSKAKLLKVKLL----LAA---KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD--VAQRHFQKGLRLD  154 (409)
Q Consensus        84 ~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~  154 (409)
                      ..+|.+..+|..++.++    ...   +++++++..+.++++.+|.+..+|..++.+....+.++  ++++++.+++..+
T Consensus        97 ~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A           97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence            99999999999999999    777   78999999999999999999999999999999999999  9999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC------HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhH-H
Q 043837          155 PEHSELKKAYFALKNLLKKTKSAEDNVSKGK------LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKD-A  227 (409)
Q Consensus       155 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A  227 (409)
                      |.+..   +|...+.++..+         +.      ++++++++++++.++|+    +..+|+.++.++...|+..+ .
T Consensus       177 ~~N~s---AW~~R~~ll~~l---------~~~~~~~~~~eEl~~~~~aI~~~p~----n~SaW~y~~~ll~~~~~~~~~~  240 (306)
T 3dra_A          177 LKNNS---AWSHRFFLLFSK---------KHLATDNTIDEELNYVKDKIVKCPQ----NPSTWNYLLGIHERFDRSITQL  240 (306)
T ss_dssp             TTCHH---HHHHHHHHHHSS---------GGGCCHHHHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTCCGGGG
T ss_pred             CCCHH---HHHHHHHHHHhc---------cccchhhhHHHHHHHHHHHHHhCCC----CccHHHHHHHHHHhcCCChHHH
Confidence            99999   888888887766         55      99999999999999999    77799999999999998655 5


Q ss_pred             HHHHHHHHhcC---hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh-hCCCcHHHHHHHHH
Q 043837          228 LSSCTEALNIN---EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ-QSPQDMNIREALMR  284 (409)
Q Consensus       228 ~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~  284 (409)
                      ...+.+++.++   |.++.++..++.++.+.|+.++|++.|+++.+ ++|-....+.....
T Consensus       241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence            56778787776   88999999999999999999999999999997 89998888776543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=7.5e-23  Score=180.97  Aligned_cols=247  Identities=13%  Similarity=0.032  Sum_probs=195.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh---
Q 043837           18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ---------LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF---   85 (409)
Q Consensus        18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---   85 (409)
                      +|..+.++..+|.++...|++++|+..+.+++..         ..........+..+...|++++|+.++.+ ++..   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~  101 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND-ALAIREK  101 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHH
Confidence            5677889999999999999999999999998873         44566778899999999999999999999 5554   


Q ss_pred             -----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           86 -----SPACSKAKLLKVKLLLAAKDYASAISETGYLLKED--------ENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        86 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                           .|....++..+|.++...|++++|+..+++++++.        |....++..+|.++...|++++|+.++++++.
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 46678899999999999999999999999999874        55567889999999999999999999999998


Q ss_pred             c-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC---------Ccc--chHHHHHHHHH
Q 043837          153 L-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN---------HTA--HNVHLYLGLCK  216 (409)
Q Consensus       153 ~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~--~~~~~~~~la~  216 (409)
                      +     .++++....++..++.++...         |++++|+.++++++++.|.         ...  .....+..++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQ---------GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG  252 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcC
Confidence            7     133444444888999998888         9999999999999976432         110  12334455566


Q ss_pred             HHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          217 VLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      .+...+.+.+|+..+.+++...|..+.++..+|.+|..+|++++|+.+|++++++.|+
T Consensus       253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          253 KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             chhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            6667788889999999999999999999999999999999999999999999998775

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=2.3e-22  Score=195.71  Aligned_cols=160  Identities=16%  Similarity=0.235  Sum_probs=148.2

Q ss_pred             HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837           66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  145 (409)
                      ..+|++++|+.+|++ +++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|++
T Consensus        20 ~~~G~~~eAi~~~~k-Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~   98 (723)
T 4gyw_A           20 REQGNIEEAVRLYRK-ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ   98 (723)
T ss_dssp             HHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            333445566666666 8888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK  225 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~  225 (409)
                      .|+++++++|++..   ++.+++.++...         |++++|+..|+++++++|+    +..++.++|.++..+++++
T Consensus        99 ~~~kAl~l~P~~~~---a~~~Lg~~~~~~---------g~~~eAi~~~~~Al~l~P~----~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           99 CYTRAIQINPAFAD---AHSNLASIHKDS---------GNIPEAIASYRTALKLKPD----FPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----ChHHHhhhhhHHHhcccHH
Confidence            99999999999999   999999999888         9999999999999999999    7889999999999999999


Q ss_pred             HHHHHHHHHHhcChhcH
Q 043837          226 DALSSCTEALNINEELI  242 (409)
Q Consensus       226 ~A~~~~~~al~~~p~~~  242 (409)
                      +|++.+++++++.|+..
T Consensus       163 ~A~~~~~kal~l~~~~~  179 (723)
T 4gyw_A          163 DYDERMKKLVSIVADQL  179 (723)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhHH
Confidence            99999999999877643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=7.9e-21  Score=165.10  Aligned_cols=218  Identities=15%  Similarity=0.132  Sum_probs=195.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCch
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQ----LCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYT   72 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~   72 (409)
                      .|++++|+..|+++++  |+++.+++.+|.++..    .+++++|+..+.+++... .....+..+..+..    .++++
T Consensus        19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~   95 (273)
T 1ouv_A           19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTN   95 (273)
T ss_dssp             TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHH
Confidence            4789999999999999  7889999999999999    999999999999988754 56778889999999    99999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHH
Q 043837           73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQ  144 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~  144 (409)
                      +|+..|++ ++..  .++.+++.+|.+|..    .+++++|+.+|+++++.+  ++.+++.+|.+|..    .+++++|+
T Consensus        96 ~A~~~~~~-a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~  170 (273)
T 1ouv_A           96 KALQYYSK-ACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKAL  170 (273)
T ss_dssp             HHHHHHHH-HHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHH-HHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            99999998 6655  488999999999999    999999999999999976  68899999999999    99999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK  220 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~  220 (409)
                      .+|+++++..  +..   ++..++.++..    .         +++++|+.+|+++++..|      ..++.++|.+|..
T Consensus       171 ~~~~~a~~~~--~~~---a~~~lg~~~~~g~~~~---------~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~  230 (273)
T 1ouv_A          171 ASYDKACDLK--DSP---GCFNAGNMYHHGEGAT---------KNFKEALARYSKACELEN------GGGCFNLGAMQYN  230 (273)
T ss_dssp             HHHHHHHHTT--CHH---HHHHHHHHHHHTCSSC---------CCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHCC--CHH---HHHHHHHHHHcCCCCC---------ccHHHHHHHHHHHHhCCC------HHHHHHHHHHHHc
Confidence            9999999874  445   78888888877    6         999999999999999855      4588999999999


Q ss_pred             ----cCChhHHHHHHHHHHhcChhcHHHHH
Q 043837          221 ----LGRGKDALSSCTEALNINEELIEALV  246 (409)
Q Consensus       221 ----~~~~~~A~~~~~~al~~~p~~~~~~~  246 (409)
                          .+++++|+.+|++++++.|.++..++
T Consensus       231 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l  260 (273)
T 1ouv_A          231 GEGVTRNEKQAIENFKKGCKLGAKGACDIL  260 (273)
T ss_dssp             TSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence                99999999999999999887655443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.89  E-value=4.8e-22  Score=171.61  Aligned_cols=205  Identities=20%  Similarity=0.270  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLH  129 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  129 (409)
                      ...+..|..++..|+|++|+..|++ ++...|.+   +.+++.+|.++...|++++|+..|+++++.+|++   +.+++.
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKA-VFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-HGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH-HHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            3445555556666677778888877 88888888   8999999999999999999999999999998854   678999


Q ss_pred             HHHHHHh--------cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH-----HHHHHhhHHhcCCHHHHHHHHHHH
Q 043837          130 RGRAYYY--------LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK-----KTKSAEDNVSKGKLRVAVEDFKAA  196 (409)
Q Consensus       130 l~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~a  196 (409)
                      +|.++..        +|++++|+..|++++..+|++.....++..+..+..     ....+..++..|++++|+..|+++
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  174 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV  174 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999        999999999999999999998764434411111110     122344445559999999999999


Q ss_pred             HccCCCCccchHHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcChhcH---HHHHHHHHHHHhccCHHHHH
Q 043837          197 LALDPNHTAHNVHLYLGLCKVLVKL----------GRGKDALSSCTEALNINEELI---EALVQRGEAKLLTEDWEGAV  262 (409)
Q Consensus       197 l~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~  262 (409)
                      ++..|+++. ...+++.+|.++..+          |++++|+..|+++++..|+++   .+...++.++..+++++++.
T Consensus       175 l~~~p~~~~-~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          175 FDAYPDTPW-ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHCTTSTT-HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHCCCCch-HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999998664 677999999999987          899999999999999999884   56666777777777766543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.89  E-value=7.9e-22  Score=164.02  Aligned_cols=179  Identities=17%  Similarity=0.147  Sum_probs=133.0

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHc
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH----------------RGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      ++..++..|..++..|++++|+..|+++++.+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34556667777777777777777777777777777777777                88888888888888888888888


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC--hhHHHHH
Q 043837          153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR--GKDALSS  230 (409)
Q Consensus       153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~  230 (409)
                      ++|++..   ++..++.++...         |++++|+.+|+++++++|+    +..+++++|.+|...++  ...+...
T Consensus        83 ~~p~~~~---~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~~~~~~~  146 (208)
T 3urz_A           83 KAPNNVD---CLEACAEMQVCR---------GQEKDALRMYEKILQLEAD----NLAANIFLGNYYYLTAEQEKKKLETD  146 (208)
T ss_dssp             HCTTCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            8888877   788888888777         8888888888888888888    66688888888776653  4556777


Q ss_pred             HHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837          231 CTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA  285 (409)
Q Consensus       231 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  285 (409)
                      +.+++...|. ..+++.+|.++..+|++++|+.+|+++++++|+. .+...+.++
T Consensus       147 ~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i  199 (208)
T 3urz_A          147 YKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI  199 (208)
T ss_dssp             HC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred             HHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence            7777655443 3467778888888899999999999999998874 344444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.89  E-value=1.3e-21  Score=178.80  Aligned_cols=235  Identities=15%  Similarity=0.100  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHcCChHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhC-------CCcH
Q 043837           25 YFHRGSVLRQLCRVKARNSVAEKELS-------QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFS-------PACS   90 (409)
Q Consensus        25 ~~~la~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------p~~~   90 (409)
                      ++.+|.++...|++++|+..+.+++.       ....+..++..|..+...|++++|+.++.+ ++...       +...
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ-AYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHhCccchHHHH
Confidence            44599999999999999999999987       344678889999999999999999999999 66653       3345


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cC-CCcH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADHDVAQRHFQKGLR-----LD-PEHS  158 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~  158 (409)
                      .++..+|.++..+|++++|+..+++++++.|...      .++.++|.+|..+|++++|+.++++++.     .+ |...
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            6899999999999999999999999998855432      4789999999999999999999999999     34 5544


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHHHHHHHHHHHHcCC---hhHHHHHHHH
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHLYLGLCKVLVKLGR---GKDALSSCTE  233 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~  233 (409)
                      .   ++..++.++...         |++++|+.++++++++.+.  ++. ....+..++.++...++   +.+|+..+++
T Consensus       265 ~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          265 Q---AYFLITQIHYKL---------GKIDKAHEYHSKGMAYSQKAGDVI-YLSEFEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             H---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            4   888999988888         9999999999999998543  221 33346789999999999   8888888887


Q ss_pred             HHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          234 ALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       234 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      . ...|....++..+|.+|..+|++++|+.++++++++...
T Consensus       332 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          332 K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            7 555677889999999999999999999999999987543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.89  E-value=9e-22  Score=175.68  Aligned_cols=244  Identities=18%  Similarity=0.134  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh------CCCcH
Q 043837           22 SEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF------SPACS   90 (409)
Q Consensus        22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p~~~   90 (409)
                      ...++..|.++...|++++|+..+.+++...+     ........+..++..|++++|+.++.+ ++..      .|...
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH-DLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhcccccHHHH
Confidence            45678889999999999999999999988432     246677899999999999999999998 5554      44567


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCC--------------------hHHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLHRGRAYYYLAD--------------------HDVAQ  144 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~A~  144 (409)
                      .++..+|.++...|++++|+..+++++++.|..      ..++..+|.++...|+                    +++|+
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            889999999999999999999999999886543      3488999999999999                    99999


Q ss_pred             HHHHHHHccC---CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--ccchHHHHHHHHHHHH
Q 043837          145 RHFQKGLRLD---PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--TAHNVHLYLGLCKVLV  219 (409)
Q Consensus       145 ~~~~~al~~~---p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~la~~~~  219 (409)
                      .++++++.+.   ++......++..++.++...         |++++|+.++++++++.+..  +.....++..+|.++.
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  234 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL---------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI  234 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            9999988753   22333444777888888777         99999999999999876642  2224568999999999


Q ss_pred             HcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          220 KLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       220 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      ..|++++|+..+++++.+.+..      ..++..+|.++...|++++|+.++++++++.+..
T Consensus       235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999887665      7889999999999999999999999999986543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.89  E-value=8.9e-22  Score=172.77  Aligned_cols=251  Identities=9%  Similarity=0.012  Sum_probs=188.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837            6 EALDDLNTAIEADPTLSEAYFHRGSVLRQL---CRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV   82 (409)
Q Consensus         6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   82 (409)
                      +|.+++.++-+.-+.....+     .++..   +++++|...+.++             +..+...|++++|+..|.+ +
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~-a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLK-A   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHH-H
T ss_pred             cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHH-H
Confidence            56777777777665432221     11122   1466666665544             3456678999999999998 6


Q ss_pred             HhhCC------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhc-CChHHHHHHHHH
Q 043837           83 LVFSP------ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLHRGRAYYYL-ADHDVAQRHFQK  149 (409)
Q Consensus        83 ~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~  149 (409)
                      +...+      ..+.++..+|.+|..+|++++|+.+|++++++.|..      ..++..+|.+|... |++++|+.+|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            66532      236789999999999999999999999999987753      45789999999996 999999999999


Q ss_pred             HHccCCCcH---HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc---hHHHHHHHHHHHHHcCC
Q 043837          150 GLRLDPEHS---ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH---NVHLYLGLCKVLVKLGR  223 (409)
Q Consensus       150 al~~~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~la~~~~~~~~  223 (409)
                      ++.+.|...   ....++..++.++...         |++++|+.+|++++++.|++...   ...++.++|.++..+|+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~  214 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALD---------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD  214 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC
Confidence            999877542   2234677788887777         99999999999999999886431   23478999999999999


Q ss_pred             hhHHHHHHHHHHhcChhcHHH-----HHHHHHHHH--hccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          224 GKDALSSCTEALNINEELIEA-----LVQRGEAKL--LTEDWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       224 ~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                      +++|+.+|+++++++|+....     +..++.++.  ..+++++|+..|++++.++|....+...+.+
T Consensus       215 ~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~  282 (292)
T 1qqe_A          215 AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE  282 (292)
T ss_dssp             HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence            999999999999999986553     444556554  5678999999999999998877655544443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=1.1e-20  Score=167.24  Aligned_cols=225  Identities=9%  Similarity=0.035  Sum_probs=190.8

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHh
Q 043837           72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLA-------AKDY-------ASAISETGYLLK-EDENNLEALLHRGRAYYY  136 (409)
Q Consensus        72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~  136 (409)
                      ++|+..|++ ++..+|.++.+|+.+|..+..       .|++       ++|+..|+++++ ++|++..+|..+|.++..
T Consensus        33 ~~a~~~~~~-al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQ-CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            678888988 889999999999999999874       5775       999999999999 799999999999999999


Q ss_pred             cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH
Q 043837          137 LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK  216 (409)
Q Consensus       137 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~  216 (409)
                      .|++++|+..|++++++.|.+...  +|..++.++...         |++++|+..|+++++..|.    ...++...+.
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~p~----~~~~~~~~a~  176 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTL--VYIQYMKFARRA---------EGIKSGRMIFKKAREDART----RHHVYVTAAL  176 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHH--HHHHHHHHHHHH---------HCHHHHHHHHHHHHTSTTC----CTHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccH--HHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCC----CHHHHHHHHH
Confidence            999999999999999999988642  688888888777         9999999999999999998    4556766665


Q ss_pred             HHHH-cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh---CCC-cHHHHHHHHHHHHHHhh
Q 043837          217 VLVK-LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ---SPQ-DMNIREALMRAEKALKM  291 (409)
Q Consensus       217 ~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~  291 (409)
                      +... .|++++|+..|+++++.+|+++.+|..++.++..+|++++|+..|+++++.   .|+ ...++..+.......+.
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~  256 (308)
T 2ond_A          177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence            5443 799999999999999999999999999999999999999999999999996   553 66777776666554433


Q ss_pred             cchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC
Q 043837          292 SKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD  330 (409)
Q Consensus       292 ~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~  330 (409)
                                       .+++...+++ +...+|+....
T Consensus       257 -----------------~~~a~~~~~~-a~~~~p~~~~~  277 (308)
T 2ond_A          257 -----------------LASILKVEKR-RFTAFREEYEG  277 (308)
T ss_dssp             -----------------HHHHHHHHHH-HHHHTTTTTSS
T ss_pred             -----------------HHHHHHHHHH-HHHHccccccc
Confidence                             5666677766 45556665433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=3.6e-20  Score=176.53  Aligned_cols=274  Identities=11%  Similarity=0.029  Sum_probs=207.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH------------------------H
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA------------------------Q   56 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------------------------~   56 (409)
                      .|++++|...|+++++.+|.+..+|..++..+...|++++|...+.+++...+..                        .
T Consensus        25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~  104 (530)
T 2ooe_A           25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMA  104 (530)
T ss_dssp             SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence            3688999999999999999999999999999999999999988777765421111                        1


Q ss_pred             HHHHHHHH-----------------HH----------hCCCchHHHHHHHHHHHhhCCCcH--HHHHHHHH---------
Q 043837           57 STFDSALK-----------------LY----------DSGEYTKPLEYIDKVVLVFSPACS--KAKLLKVK---------   98 (409)
Q Consensus        57 ~~~~~a~~-----------------~~----------~~~~~~~A~~~~~~~~~~~~p~~~--~~~~~~a~---------   98 (409)
                      ..|+.++.                 +.          ..+++++|+.+|.+ ++. .|...  ..|.....         
T Consensus       105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~-al~-~P~~~~~~~~~~~~~~e~~~~~~~  182 (530)
T 2ooe_A          105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR-GCV-NPMINIEQLWRDYNKYEEGINIHL  182 (530)
T ss_dssp             HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH-HTT-SCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH-HHh-chhhhHHHHHHHHHHHHHhhchhH
Confidence            12222221                 11          14677788888877 555 35431  11111100         


Q ss_pred             ------------------------------------------------------HHHHc------cC----HHHHHHHHH
Q 043837           99 ------------------------------------------------------LLLAA------KD----YASAISETG  114 (409)
Q Consensus        99 ------------------------------------------------------~~~~~------~~----~~~A~~~~~  114 (409)
                                                                            +.+..      ++    ...++..|+
T Consensus       183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~  262 (530)
T 2ooe_A          183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE  262 (530)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence                                                                  00000      11    136778899


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHc-cCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 043837          115 YLLKEDENNLEALLHRGRAYYY-------LADHD-------VAQRHFQKGLR-LDPEHSELKKAYFALKNLLKKTKSAED  179 (409)
Q Consensus       115 ~al~~~p~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~l~~~~~~~~~~~~  179 (409)
                      +++..+|.++.+|+.+|.++..       .|+++       +|+..|++++. +.|++..   +|..++.++...     
T Consensus       263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~---l~~~~~~~~~~~-----  334 (530)
T 2ooe_A          263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---LYFAYADYEESR-----  334 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH---HHHHHHHHHHHT-----
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHhc-----
Confidence            9999999999999999999886       78887       89999999997 7899888   888888888877     


Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHH-HHhccCH
Q 043837          180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEA-KLLTEDW  258 (409)
Q Consensus       180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~  258 (409)
                          |++++|...|++++++.|.++   ..+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|++
T Consensus       335 ----g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~  407 (530)
T 2ooe_A          335 ----MKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  407 (530)
T ss_dssp             ----TCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred             ----CCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence                999999999999999988731   35889999999999999999999999999888877777766665 3458999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          259 EGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       259 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      ++|+..|+++++..|+++.++..+..+....+.
T Consensus       408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~  440 (530)
T 2ooe_A          408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE  440 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred             hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC
Confidence            999999999999999999888877777655443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.89  E-value=4.5e-19  Score=167.31  Aligned_cols=241  Identities=12%  Similarity=0.031  Sum_probs=189.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQ----LCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYTK   73 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~   73 (409)
                      +++++|+..|+++++.  .++.+++.+|.+|..    .+++++|...+.++... ......+..+..+..    .+++++
T Consensus        57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~  133 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLPQAQQNLGVMYHEGNGVKVDKAE  133 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            6889999999999886  678899999999999    99999999999888764 345667778888887    789999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 043837           74 PLEYIDKVVLVFSPACSKAKLLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQR  145 (409)
Q Consensus        74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~  145 (409)
                      |+..|++ +..  +.++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.
T Consensus       134 A~~~~~~-a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  208 (490)
T 2xm6_A          134 SVKWFRL-AAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQ  208 (490)
T ss_dssp             HHHHHHH-HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHH-HHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence            9999988 444  3578889999999988    78999999999999876  578899999999988    889999999


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH-
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK-  220 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~-  220 (409)
                      +|+++++..  ++.   ++..++.++..    .         +++++|+.+|+++++..      ...+++++|.++.. 
T Consensus       209 ~~~~a~~~~--~~~---a~~~lg~~y~~g~g~~---------~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g  268 (490)
T 2xm6_A          209 WYRKSATSG--DEL---GQLHLADMYYFGIGVT---------QDYTQSRVLFSQSAEQG------NSIAQFRLGYILEQG  268 (490)
T ss_dssp             HHHHHHHTT--CHH---HHHHHHHHHHHTSSSC---------CCHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCC--CHH---HHHHHHHHHHcCCCCC---------CCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCC
Confidence            999988753  444   77778877765    4         67777777777777642      34466777777777 


Q ss_pred             ---cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhhC
Q 043837          221 ---LGRGKDALSSCTEALNINEELIEALVQRGEAKLLT-----EDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       221 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~  272 (409)
                         .+++++|+.+|+++++.  .++.+++.+|.+|...     +++++|+.+|+++++..
T Consensus       269 ~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~  326 (490)
T 2xm6_A          269 LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG  326 (490)
T ss_dssp             TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence               77777777777777654  4566777777777766     67777777777777654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.88  E-value=7.4e-19  Score=165.80  Aligned_cols=223  Identities=11%  Similarity=0.031  Sum_probs=102.0

Q ss_pred             CCHHHHHHHHHHHHH----cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHhhCCCcHH
Q 043837           20 TLSEAYFHRGSVLRQ----LCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYTKPLEYIDKVVLVFSPACSK   91 (409)
Q Consensus        20 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~p~~~~   91 (409)
                      .++.+++.+|.+|..    .+++++|+..+.++... ......+..+..+..    .+++++|+..|.+ +..  +.++.
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~-a~~--~~~~~  112 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK-AAL--KGLPQ  112 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHH--TTCHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHH--CCCHH
Confidence            344444455555444    44455554444444432 223344444444444    4445555555544 222  13444


Q ss_pred             HHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837           92 AKLLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQRHFQKGLRLDPEHSELKKA  163 (409)
Q Consensus        92 ~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~  163 (409)
                      +++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++.  .+..   +
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~---a  185 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVW---S  185 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH---H
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH---H
Confidence            44445554444    44455555555544432  234444455554444    44455555555544443  2233   4


Q ss_pred             HHHHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 043837          164 YFALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEAL  235 (409)
Q Consensus       164 ~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al  235 (409)
                      +..++.++..    .         +++++|+.+|+++++..      ++.++..+|.+|..    .+++++|+.+|++++
T Consensus       186 ~~~Lg~~y~~g~g~~---------~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  250 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVE---------RNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA  250 (490)
T ss_dssp             HHHHHHHHHHTSSSC---------CCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCC---------cCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            4444444443    3         44455555555444431      22344444444444    444555555555444


Q ss_pred             hcChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHh
Q 043837          236 NINEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       236 ~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~  270 (409)
                      +.  .++.+++.+|.+|..    .+++++|+.+|+++.+
T Consensus       251 ~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~  287 (490)
T 2xm6_A          251 EQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE  287 (490)
T ss_dssp             TT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred             HC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence            43  234444444444444    4445555555554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.88  E-value=8.2e-22  Score=192.67  Aligned_cols=185  Identities=17%  Similarity=0.087  Sum_probs=173.3

Q ss_pred             hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837           84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLL--------KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP  155 (409)
Q Consensus        84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  155 (409)
                      ..+|.++.+++..+   ...+++++|++.+++++        +.+|++..+++.+|.++..+|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            45788888887777   78999999999999999        99999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      ++..   ++..++.++...         |++++|+..|+++++++|+    +..++.++|.++..+|++++ +..|++++
T Consensus       465 ~~~~---a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~P~----~~~~~~~lg~~~~~~g~~~~-~~~~~~al  527 (681)
T 2pzi_A          465 WRWR---LVWYRAVAELLT---------GDYDSATKHFTEVLDTFPG----ELAPKLALAATAELAGNTDE-HKFYQTVW  527 (681)
T ss_dssp             CCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred             chHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence            9998   999999999988         9999999999999999999    66799999999999999999 99999999


Q ss_pred             hcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837          236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA  288 (409)
Q Consensus       236 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  288 (409)
                      +++|++..+++++|.++..+|++++|+..|+++++++|++..++..+..+...
T Consensus       528 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          528 STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999998888777643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.88  E-value=3.5e-21  Score=156.57  Aligned_cols=173  Identities=18%  Similarity=0.110  Sum_probs=163.3

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK  168 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~  168 (409)
                      ...++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|++..   ++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a   83 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---VATVLG   83 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999988   888889


Q ss_pred             HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHH
Q 043837          169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR  248 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  248 (409)
                      .++...         +++++|+.++++++...|.    ...++..+|.++...|++++|+..++++++..|.++.++..+
T Consensus        84 ~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  150 (186)
T 3as5_A           84 LTYVQV---------QKYDLAVPLLIKVAEANPI----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI  150 (186)
T ss_dssp             HHHHHH---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHh---------cCHHHHHHHHHHHHhcCcH----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHH
Confidence            888888         9999999999999999998    677999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          249 GEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       249 a~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      |.++...|++++|+.++++++++.|++..
T Consensus       151 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          151 AFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence            99999999999999999999999887653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.88  E-value=2.1e-21  Score=161.40  Aligned_cols=171  Identities=13%  Similarity=0.074  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHh
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLL----------------KVKLLLAAKDYASAISETGYLLK  118 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~  118 (409)
                      ....+.+|..++..|++++|+..|.+ ++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQ-TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34567788888888888889988888 88888988888888                99999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      ++|+++.+++.+|.++...|++++|+.+|+++++++|++..   ++..++.++.....       .....+...+.+++.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~~~-------~~~~~~~~~~~~~~~  152 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA---ANIFLGNYYYLTAE-------QEKKKLETDYKKLSS  152 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHH-------HHHHHHHHHHC---C
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHhH-------HHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999   99999998865511       335567777877765


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                      ..|     ...+++.+|.++...+++++|+.+|+++++++|+.
T Consensus       153 ~~~-----~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          153 PTK-----MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             CCH-----HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             CCc-----hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            443     24478889999999999999999999999999974

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=3.3e-20  Score=169.44  Aligned_cols=275  Identities=12%  Similarity=0.032  Sum_probs=203.6

Q ss_pred             CChHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHcCChHHHh-----------HHHHHHHHHHHH------HHH
Q 043837            2 KHYSEALDDLNTAIEADP---TLSEAY--FHR--GSVLRQLCRVKARN-----------SVAEKELSQLLQ------AQS   57 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~~l~~~~~------~~~   57 (409)
                      +++++|...++++.+.-+   .+...+  +.+  .+.....+.+..+.           ..+...-.....      ...
T Consensus        26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~  105 (383)
T 3ulq_A           26 FSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYF  105 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHH
Confidence            578899999988866422   344433  222  22333334444443           333332221122      223


Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------H
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVF------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN-------L  124 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~  124 (409)
                      ++.+|..++..|++++|+.++.+ ++..      .+..+.++..+|.++...|++++|+.++++++++.+..       .
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKK-AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-HHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH-HHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            44589999999999999999999 6665      22356899999999999999999999999999985433       4


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--
Q 043837          125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--  199 (409)
Q Consensus       125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--  199 (409)
                      .++..+|.+|..+|++++|+.++++++.+.+   +......++.++|.++...         |++++|+.++++++++  
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~  255 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ---------SQYEDAIPYFKRAIAVFE  255 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999998754   3344445788888888877         9999999999999994  


Q ss_pred             ---C-CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----ChhcHHHHHHHHHHHHhccC---HHHHHHHHHH
Q 043837          200 ---D-PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-----NEELIEALVQRGEAKLLTED---WEGAVEDLKS  267 (409)
Q Consensus       200 ---~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~  267 (409)
                         + |.    ...++.++|.++..+|++++|+.++++++++     +|.....+..++.++...++   +++|+..+++
T Consensus       256 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          256 ESNILPS----LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             HTTCGGG----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             hhccchh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence               3 44    6889999999999999999999999999988     45455556789999999999   7888888876


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          268 AAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       268 al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      . ...|....+...++.+....+.
T Consensus       332 ~-~~~~~~~~~~~~la~~y~~~g~  354 (383)
T 3ulq_A          332 K-MLYADLEDFAIDVAKYYHERKN  354 (383)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             C-cCHHHHHHHHHHHHHHHHHCCC
Confidence            6 3333334455555555554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.87  E-value=2.6e-20  Score=156.88  Aligned_cols=188  Identities=13%  Similarity=0.080  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---ALL  128 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  128 (409)
                      ....+.+|..++..|+|++|+..|++ ++...|.+   ..+++.+|.++...|++++|+..|+++++.+|+++.   +++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEA-LDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            34567788888888889999999988 77777765   478899999999999999999999999999998764   788


Q ss_pred             HHHHHHHh------------------cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHH
Q 043837          129 HRGRAYYY------------------LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAV  190 (409)
Q Consensus       129 ~l~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~  190 (409)
                      .+|.++..                  .|++++|+..|+++++.+|++.....+...+..+...                 
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-----------------  145 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-----------------  145 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------
Confidence            88888876                  4567777777777777777776533333333322211                 


Q ss_pred             HHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH---HHHHHHHHHHHhccCHHHHHHHHHH
Q 043837          191 EDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI---EALVQRGEAKLLTEDWEGAVEDLKS  267 (409)
Q Consensus       191 ~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~  267 (409)
                                      .......+|.++...|++++|+..|+++++..|+++   .++..+|.++..+|++++|+..+++
T Consensus       146 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~  209 (225)
T 2yhc_A          146 ----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI  209 (225)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence                            122446789999999999999999999999988765   7899999999999999999999999


Q ss_pred             HHhhCCCcH
Q 043837          268 AAQQSPQDM  276 (409)
Q Consensus       268 al~~~p~~~  276 (409)
                      +....|++.
T Consensus       210 l~~~~~~~~  218 (225)
T 2yhc_A          210 IAANSSNTL  218 (225)
T ss_dssp             HHHCCSCCC
T ss_pred             HHhhCCCch
Confidence            999888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.87  E-value=2.7e-19  Score=162.69  Aligned_cols=265  Identities=14%  Similarity=0.010  Sum_probs=211.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHhC
Q 043837            1 MKHYSEALDDLNTAIEADPTLS-----EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-------AQSTFDSALKLYDS   68 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~a~~~~~~   68 (409)
                      .|++++|+..+++++...|...     .++..+|.++...|++++|...+.+++.....       .......+..+...
T Consensus        27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            4789999999999999887653     26788999999999999999999998874332       33456788899999


Q ss_pred             CCchHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH
Q 043837           69 GEYTKPLEYIDKVVLVFS--------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-----NLEALLHRGRAYY  135 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~  135 (409)
                      |++++|+.++.+ ++...        |....++..+|.++...|++++|+..+++++.+.+.     ...++..+|.++.
T Consensus       107 G~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  185 (373)
T 1hz4_A          107 GFLQTAWETQEK-AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  185 (373)
T ss_dssp             TCHHHHHHHHHH-HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence            999999999998 55543        345677888999999999999999999999998775     2457889999999


Q ss_pred             hcCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                      ..|++++|+.++++++.+.+.  ...   .+...    .....+..+...|++++|...+.+++...|..+......+..
T Consensus       186 ~~g~~~~A~~~l~~a~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          186 ARGDLDNARSQLNRLENLLGNGKYHS---DWISN----ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCCCH---HHHHH----HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHhccCcch---hHHHH----HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            999999999999999876332  211   11111    001112223345999999999999999877543323456789


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcChh------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837          214 LCKVLVKLGRGKDALSSCTEALNINEE------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       214 la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  273 (409)
                      ++.++...|++++|+..+++++...+.      ...++..++.++...|++++|...+++++.+.+
T Consensus       259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999887543      235888899999999999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.87  E-value=4e-22  Score=156.52  Aligned_cols=146  Identities=13%  Similarity=0.072  Sum_probs=113.0

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH
Q 043837           96 KVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK  175 (409)
Q Consensus        96 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~  175 (409)
                      +|.++...|++++|+..+++++..+|+++.+++.+|.+|+..|++++|+.+|+++++++|++..   +|..++.++... 
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~-   78 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---AHRFLGLLYELE-   78 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT-
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc-
Confidence            5667777788888888888888888877778888888888888888888888888888888877   778888777777 


Q ss_pred             HHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH-HHHHHhcChhcHHHHHHHHHHHHh
Q 043837          176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS-CTEALNINEELIEALVQRGEAKLL  254 (409)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~  254 (409)
                              |++++|+..|+++++++|+    ++.++.++|.++...+++++|... ++++++++|+++.++..++.++..
T Consensus        79 --------~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           79 --------ENTDKAVECYRRSVELNPT----QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             --------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             --------CchHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence                    8888888888888888887    566888888888888887766654 478888888888888888877777


Q ss_pred             ccC
Q 043837          255 TED  257 (409)
Q Consensus       255 ~~~  257 (409)
                      .|+
T Consensus       147 ~G~  149 (150)
T 4ga2_A          147 EGE  149 (150)
T ss_dssp             CCC
T ss_pred             hCc
Confidence            664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.86  E-value=4.1e-20  Score=162.15  Aligned_cols=214  Identities=10%  Similarity=0.046  Sum_probs=172.7

Q ss_pred             HHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc------HHHHHH
Q 043837           29 GSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC------SKAKLL   95 (409)
Q Consensus        29 a~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~------~~~~~~   95 (409)
                      |.+|..+|++++|+..+.+++...       ..+..+...+..+...|++++|+.+|++ ++.+.|..      ..++..
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~-Al~l~~~~g~~~~~a~~~~~  122 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN-AIQIFTHRGQFRRGANFKFE  122 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHH
Confidence            778999999999999999988753       2356778899999999999999999999 77766543      568999


Q ss_pred             HHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH----HHHHH
Q 043837           96 KVKLLLAA-KDYASAISETGYLLKEDENN------LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE----LKKAY  164 (409)
Q Consensus        96 ~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~  164 (409)
                      +|.+|... |++++|+.+|++++++.|..      ..++..+|.++..+|++++|+.+|++++.+.|++..    ....+
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  202 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999996 99999999999999998754      467899999999999999999999999999987653    22356


Q ss_pred             HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc-hHHHHHHHHHHHH--HcCChhHHHHHHHHHHhcChhc
Q 043837          165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH-NVHLYLGLCKVLV--KLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~  241 (409)
                      ..++.++...         |++++|+.+|+++++++|+.... ....+..++.++.  ..+++++|+..|++++.++|..
T Consensus       203 ~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          203 LKKGLCQLAA---------TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             HHHHHHHHHT---------TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence            7778887777         99999999999999999985431 1234555666664  4678999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 043837          242 IEALVQRGEAK  252 (409)
Q Consensus       242 ~~~~~~la~~~  252 (409)
                      ..++..+-...
T Consensus       274 ~~~~~~~k~~~  284 (292)
T 1qqe_A          274 ITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77776665544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.86  E-value=2e-19  Score=156.54  Aligned_cols=234  Identities=11%  Similarity=0.004  Sum_probs=203.9

Q ss_pred             HHHHHHHHhCCCc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-
Q 043837           59 FDSALKLYDSGEY-TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK--DYASAISETGYLLKEDENNLEALLHRGRAY-  134 (409)
Q Consensus        59 ~~~a~~~~~~~~~-~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-  134 (409)
                      +.........+.+ ++|+.++++ ++.++|.+..+|+.++.++..++  ++++++..+..++..+|++..+|+.++.++ 
T Consensus        36 ~~~~~a~~~~~e~s~~aL~~t~~-~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~  114 (306)
T 3dra_A           36 MGLLLALMKAEEYSERALHITEL-GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIG  114 (306)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHH-HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence            3344445566666 589999998 99999999999999999999999  999999999999999999999999999999 


Q ss_pred             ---Hhc---CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH--HHHHHHHHHHccCCCCccc
Q 043837          135 ---YYL---ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLR--VAVEDFKAALALDPNHTAH  206 (409)
Q Consensus       135 ---~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~  206 (409)
                         ...   +++++++..+.+++..+|.+..   +|...+.++..+         +.++  +++++++++++.+|.    
T Consensus       115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~---aW~~R~~vl~~l---------~~~~~~~EL~~~~~~i~~d~~----  178 (306)
T 3dra_A          115 QIMELNNNDFDPYREFDILEAMLSSDPKNHH---VWSYRKWLVDTF---------DLHNDAKELSFVDKVIDTDLK----  178 (306)
T ss_dssp             HHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCTTCHHHHHHHHHHHHHCTT----
T ss_pred             HHHHhccccCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh---------cccChHHHHHHHHHHHHhCCC----
Confidence               777   7899999999999999999999   899999998888         8888  999999999999999    


Q ss_pred             hHHHHHHHHHHHHHcCC------hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHH-HHHHHHHHHhhC---CCcH
Q 043837          207 NVHLYLGLCKVLVKLGR------GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEG-AVEDLKSAAQQS---PQDM  276 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---p~~~  276 (409)
                      +..+|..++.++...+.      ++++++++++++..+|++..+|..++.++...|+..+ ......+++++.   |.++
T Consensus       179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~  258 (306)
T 3dra_A          179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS  258 (306)
T ss_dssp             CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred             CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence            78899999999999987      9999999999999999999999999999999998555 455777777776   7888


Q ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCC
Q 043837          277 NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD  326 (409)
Q Consensus       277 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d  326 (409)
                      .+...+..+....                 .+.++..+.|..++.++.|.
T Consensus       259 ~al~~la~~~~~~-----------------~~~~~A~~~~~~l~~~~Dpi  291 (306)
T 3dra_A          259 FALETLAKIYTQQ-----------------KKYNESRTVYDLLKSKYNPI  291 (306)
T ss_dssp             HHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHcc-----------------CCHHHHHHHHHHHHhccChH
Confidence            8888888876532                 23567788888877666665

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=3.4e-21  Score=170.31  Aligned_cols=229  Identities=14%  Similarity=0.083  Sum_probs=180.2

Q ss_pred             CCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH---------HHHHHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEA--------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ---------LLQAQSTFDSAL   63 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~a~   63 (409)
                      .|++++|+..|++++++        +|....++..+|.++...|++++|...+.+++..         .......+..+.
T Consensus        40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  119 (311)
T 3nf1_A           40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV  119 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            48999999999999995        6777889999999999999999999999998875         445667788999


Q ss_pred             HHHhCCCchHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHH
Q 043837           64 KLYDSGEYTKPLEYIDKVVLVF--------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--------DENNLEAL  127 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~  127 (409)
                      .+...|++++|+.++.+ ++..        .|....++..+|.++...|++++|+.+++++++.        .|....++
T Consensus       120 ~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  198 (311)
T 3nf1_A          120 LYGKRGKYKEAEPLCKR-ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK  198 (311)
T ss_dssp             HHHTTTCHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999 6655        3667888999999999999999999999999998        66677789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccCCC---------cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          128 LHRGRAYYYLADHDVAQRHFQKGLRLDPE---------HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       128 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      ..+|.++...|++++|+.++++++...|.         ...   .+........   ........+.+.+|+..+.+++.
T Consensus       199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~  272 (311)
T 3nf1_A          199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP---IWMHAEEREE---CKGKQKDGTSFGEYGGWYKACKV  272 (311)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC---HHHHHHHHHH---C-------CCSCCCC--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH---HHHHHHHHHH---hcCchhhHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999975432         221   2222222221   12222333777788888888888


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                      ..|.    ...++..+|.++...|++++|+.++++++++.|.
T Consensus       273 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          273 DSPT----VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CCch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            8887    7889999999999999999999999999998664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.85  E-value=2.5e-20  Score=162.19  Aligned_cols=236  Identities=14%  Similarity=0.056  Sum_probs=178.1

Q ss_pred             CChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchH
Q 043837            2 KHYSEALDDLNTAIEA--------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTK   73 (409)
Q Consensus         2 g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   73 (409)
                      |++++|+..|++++++        +|..+.++..+|.++...|++++|+..+.+++....                    
T Consensus        15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------------------   74 (283)
T 3edt_B           15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE--------------------   74 (283)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH--------------------
Confidence            6778888888888874        356677888888888888888877666555443211                    


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837           74 PLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--------DENNLEALLHRGRAYYYLADHDVAQR  145 (409)
Q Consensus        74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~  145 (409)
                            +......|....++..+|.++...|++++|+..+++++.+        +|....++..+|.++...|++++|+.
T Consensus        75 ------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  148 (283)
T 3edt_B           75 ------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY  148 (283)
T ss_dssp             ------HHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ------HHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                  1000224566788999999999999999999999999988        46667889999999999999999999


Q ss_pred             HHHHHHcc-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC-----ccchHHHHHHHH
Q 043837          146 HFQKGLRL-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH-----TAHNVHLYLGLC  215 (409)
Q Consensus       146 ~~~~al~~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~la  215 (409)
                      ++++++.+     .++++....++..++.++...         |++++|+.++++++++.+..     ......++..++
T Consensus       149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  219 (283)
T 3edt_B          149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ---------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE  219 (283)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence            99999987     233444444889999999888         99999999999999863220     111445677777


Q ss_pred             HHHHHcCChh------HHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          216 KVLVKLGRGK------DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       216 ~~~~~~~~~~------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                      ..+...+...      ++...+.......|....++..+|.++..+|++++|+.++++++++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            7776655543      33344444444568889999999999999999999999999999763

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.85  E-value=1.9e-19  Score=167.56  Aligned_cols=259  Identities=14%  Similarity=0.064  Sum_probs=192.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      ++++|+..|+++++.+  ++.+++.+|.+|...+...++...+......  .......+..+..+...+.+++++.....
T Consensus        89 ~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~  166 (452)
T 3e4b_A           89 EHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER  166 (452)
T ss_dssp             HHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence            4456666666665533  2335566666666555544442222222111  11234566777777777777766666444


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHcc
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAK---DYASAISETGYLLKEDENNLEALLHRGRAYYYL----ADHDVAQRHFQKGLRL  153 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~  153 (409)
                      ........++.+++.+|.+|...|   ++++|+..|+++++..|.....++.+|.+|...    +++++|+.+|+++.  
T Consensus       167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--  244 (452)
T 3e4b_A          167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--  244 (452)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence            333334455569999999999999   999999999999999999999999999999776    79999999999998  


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC-----ChhHHH
Q 043837          154 DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG-----RGKDAL  228 (409)
Q Consensus       154 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~  228 (409)
                       |.++.   +++.++.++...      ...+++++|+.+|+++.+..      ++.+++++|.+|. .|     ++++|+
T Consensus       245 -~g~~~---a~~~Lg~~~~~~------~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          245 -PGYPA---SWVSLAQLLYDF------PELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             -GGSTH---HHHHHHHHHHHS------GGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             -CCCHH---HHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence             78888   899999884311      12399999999999998653      4669999999998 55     999999


Q ss_pred             HHHHHHHhcChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          229 SSCTEALNINEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       229 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      .+|+++.   +.++.+++.+|.+|..    ..++++|+.+|+++.+.  .++.+...|..++.
T Consensus       308 ~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          308 AHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFS  365 (452)
T ss_dssp             HHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHH
T ss_pred             HHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            9999998   8899999999999987    45999999999999885  44566666666654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.85  E-value=1.8e-19  Score=164.16  Aligned_cols=234  Identities=17%  Similarity=0.108  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHcCChHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCC-------Cc
Q 043837           24 AYFHRGSVLRQLCRVKARNSVAEKELS-------QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSP-------AC   89 (409)
Q Consensus        24 ~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p-------~~   89 (409)
                      .++.+|..+...|++++|+..+.+++.       ....+...+..|..++..|++++|+.++.+ ++...+       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~  181 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ-ALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH-HHHHHHhCCCchhhH
Confidence            567889999999999999999999876       345677888999999999999999999998 665432       23


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCcH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN------NLEALLHRGRAYYYLADHDVAQRHFQKGLR-----LDPEHS  158 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~  158 (409)
                      +.++..+|.++...|++++|+..+++++++.+.      ...++.++|.+|..+|++++|+.++++++.     .+|...
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            568889999999999999999999999987431      245788999999999999999999999999     666654


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHHHHHHHHHHHHcCC---hhHHHHHHHH
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHLYLGLCKVLVKLGR---GKDALSSCTE  233 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~  233 (409)
                      .   ++..++.++...         |++++|+.++++++++.+.  ++. ....+..++.++...++   +.+|+..+++
T Consensus       262 ~---~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          262 K---VLFGLSWTLCKA---------GQTQKAFQFIEEGLDHITARSHKF-YKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             H---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCCTTCCSC-HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            4   888899888887         9999999999999998654  222 34456778888888888   8888888877


Q ss_pred             HHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837          234 ALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       234 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  272 (409)
                       ....|....++..+|.+|...|++++|+.+|++++++.
T Consensus       329 -~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          329 -KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             34456677888999999999999999999999998764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.85  E-value=1.2e-19  Score=147.40  Aligned_cols=171  Identities=18%  Similarity=0.208  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      ...++..+..+...|++++|+..+++ ++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQ-VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTT-TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34456677778888888899999988 88889999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837          135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL  214 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  214 (409)
                      ...|++++|+.++++++...|.+..   ++..++.++...         |++++|+.+++++++..|.    ...++..+
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~l  150 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFN---VRFRLGVALDNL---------GRFDEAIDSFKIALGLRPN----EGKVHRAI  150 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHH---HHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCcc----chHHHHHH
Confidence            9999999999999999999999988   888888888877         9999999999999999998    67799999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837          215 CKVLVKLGRGKDALSSCTEALNINEELI  242 (409)
Q Consensus       215 a~~~~~~~~~~~A~~~~~~al~~~p~~~  242 (409)
                      |.++...|++++|+.+++++++.+|++.
T Consensus       151 a~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          151 AFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            9999999999999999999999988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=3.5e-21  Score=151.14  Aligned_cols=143  Identities=11%  Similarity=0.019  Sum_probs=128.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837          129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV  208 (409)
Q Consensus       129 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  208 (409)
                      .||.++...+++++|+..+++++..+|+++.   .++.++.++...         |++++|+.+|+++++++|+    ++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---~~~~la~~y~~~---------~~~~~A~~~~~~al~~~p~----~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI---KGFYFAKLYYEA---------KEYDLAKKYICTYINVQER----DP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHT---THHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CH
Confidence            4788999999999999999999999998887   889999999888         9999999999999999999    78


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHH
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVED-LKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      .+|.++|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++.....+..
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999887765 59999999999998877666543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.84  E-value=1.2e-17  Score=145.98  Aligned_cols=208  Identities=11%  Similarity=0.020  Sum_probs=183.3

Q ss_pred             HHHHHHHHhCCCch-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHH
Q 043837           59 FDSALKLYDSGEYT-KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD----------YASAISETGYLLKEDENNLEAL  127 (409)
Q Consensus        59 ~~~a~~~~~~~~~~-~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~  127 (409)
                      ..........++++ +|+.++++ ++..+|.+..+|+.++.++..++.          +++++.++..++..+|.+..+|
T Consensus        33 ~~~~~~~~~~~e~s~eaL~~t~~-~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW  111 (331)
T 3dss_A           33 TQAVFQKRQAGELDESVLELTSQ-ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW  111 (331)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHH-HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHH-HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            34444555678887 78999998 999999999999999999988876          7899999999999999999999


Q ss_pred             HHHHHHHHhcCC--hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC-HHHHHHHHHHHHccCCCCc
Q 043837          128 LHRGRAYYYLAD--HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK-LRVAVEDFKAALALDPNHT  204 (409)
Q Consensus       128 ~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~  204 (409)
                      ..++.++...++  +++++.++.+++..+|.+..   +|...+.+....         +. ++++++++.++++.+|.  
T Consensus       112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~---AW~~R~~vl~~l---------~~~~~eel~~~~~~I~~~p~--  177 (331)
T 3dss_A          112 HHRCWLLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQA---------AVAPAEELAFTDSLITRNFS--  177 (331)
T ss_dssp             HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHCSC--
T ss_pred             HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh---------CcCHHHHHHHHHHHHHHCCC--
Confidence            999999999994  89999999999999999999   899998888877         77 69999999999999999  


Q ss_pred             cchHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-----------cCHH
Q 043837          205 AHNVHLYLGLCKVLVKL--------------GRGKDALSSCTEALNINEELIEALVQRGEAKLLT-----------EDWE  259 (409)
Q Consensus       205 ~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~  259 (409)
                        +..+|.+++.++...              +.++++++++.+++..+|++..+|+.+..++...           +.++
T Consensus       178 --N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~  255 (331)
T 3dss_A          178 --NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ  255 (331)
T ss_dssp             --CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence              788999999999887              4588999999999999999999998666555555           5689


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHH
Q 043837          260 GAVEDLKSAAQQSPQDMNIREALM  283 (409)
Q Consensus       260 ~A~~~~~~al~~~p~~~~~~~~l~  283 (409)
                      ++++.+++++++.|++.-+...+.
T Consensus       256 ~el~~~~elle~~pd~~w~l~~~~  279 (331)
T 3dss_A          256 SELESCKELQELEPENKWCLLTII  279 (331)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcccchHHHHHH
Confidence            999999999999999865544443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.83  E-value=8.6e-19  Score=167.02  Aligned_cols=229  Identities=9%  Similarity=-0.008  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837            5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQ-------LCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEY   77 (409)
Q Consensus         5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~   77 (409)
                      ..|+..|++++..+|.++.+|+.+|.++..       .|+++.|..                     +     .++|+..
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~---------------------~-----~~~A~~~  308 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL---------------------F-----SDEAANI  308 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH---------------------H-----HHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh---------------------h-----hHHHHHH
Confidence            478889999999999999999999998875       566542210                     0     3478888


Q ss_pred             HHHHHHh-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837           78 IDKVVLV-FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-EALLHRGRAYYYLADHDVAQRHFQKGLRLDP  155 (409)
Q Consensus        78 ~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  155 (409)
                      |++ ++. ..|.+..+|..++.++...|++++|...|++++++.|.++ .+|..++.++...|++++|+..|++++...|
T Consensus       309 ~~~-Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~  387 (530)
T 2ooe_A          309 YER-AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  387 (530)
T ss_dssp             HHH-HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHH-HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            888 675 7999999999999999999999999999999999999986 6899999999999999999999999999988


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      ....   .+...+.+..        ...|++++|+.+|+++++..|+    ++.+|..++.++...|+.++|...|++++
T Consensus       388 ~~~~---~~~~~a~~~~--------~~~~~~~~A~~~~e~al~~~p~----~~~~~~~~~~~~~~~g~~~~Ar~~~~~al  452 (530)
T 2ooe_A          388 TRHH---VYVTAALMEY--------YCSKDKSVAFKIFELGLKKYGD----IPEYVLAYIDYLSHLNEDNNTRVLFERVL  452 (530)
T ss_dssp             CCTH---HHHHHHHHHH--------HHTCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             CchH---HHHHHHHHHH--------HHcCChhHHHHHHHHHHHHCCC----CHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence            7665   4443333311        1239999999999999999998    67799999999999999999999999999


Q ss_pred             hcChhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          236 NINEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       236 ~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      ...|.+    ..+|..........|+.+.+...++++++..|++
T Consensus       453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~  496 (530)
T 2ooe_A          453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  496 (530)
T ss_dssp             HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence            986544    4488888888888999999999999999999954

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.83  E-value=2.2e-18  Score=157.03  Aligned_cols=220  Identities=15%  Similarity=0.121  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFS------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-------  122 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------  122 (409)
                      ..++.+|..++..|++++|+.+|.+ ++...      +..+.++..+|.++...|++++|+..+++++++.+.       
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  180 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYRE-AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence            3456789999999999999999998 66542      235678999999999999999999999999987543       


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc-
Q 043837          123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA-  198 (409)
Q Consensus       123 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-  198 (409)
                      ...++..+|.+|..+|++++|+.++++++.+.+   +......++.++|.++...         |++++|+.++++++. 
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---------~~~~~A~~~~~~al~~  251 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS---------GDDQMAVEHFQKAAKV  251 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHH
Confidence            244788999999999999999999999998643   3334555888899988888         999999999999999 


Q ss_pred             ----cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----ChhcHHHHHHHHHHHHhccC---HHHHHHHHH
Q 043837          199 ----LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-----NEELIEALVQRGEAKLLTED---WEGAVEDLK  266 (409)
Q Consensus       199 ----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~---~~~A~~~~~  266 (409)
                          .+|.    ...++.++|.++..+|++++|+.++++++++     +|.....+..++.++...++   +.+|+..++
T Consensus       252 ~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~  327 (378)
T 3q15_A          252 SREKVPDL----LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE  327 (378)
T ss_dssp             HHHHCGGG----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHhhCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                5555    6889999999999999999999999999987     34445667778888888888   888888877


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          267 SAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       267 ~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      +. ...|....+...++.+....+
T Consensus       328 ~~-~~~~~~~~~~~~la~~y~~~g  350 (378)
T 3q15_A          328 KK-NLHAYIEACARSAAAVFESSC  350 (378)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred             hC-CChhHHHHHHHHHHHHHHHCC
Confidence            62 222333334444555544443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.83  E-value=1.2e-17  Score=146.00  Aligned_cols=249  Identities=15%  Similarity=0.098  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 043837            5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLV   84 (409)
Q Consensus         5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   84 (409)
                      ++|+..++++|.++|++..+|..++.++..++....           ....            ...+++++.+++. ++.
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~-----------~~~~------------~~~l~~EL~~~~~-~L~  102 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKS-----------PEES------------AALVKAELGFLES-CLR  102 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSC-----------HHHH------------HHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccccc-----------chhh------------hHHHHHHHHHHHH-HHH
Confidence            479999999999999999999999999876643100           0000            1124567777777 899


Q ss_pred             hCCCcHHHHHHHHHHHHHccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHccCCCcHHHH
Q 043837           85 FSPACSKAKLLKVKLLLAAKD--YASAISETGYLLKEDENNLEALLHRGRAYYYLAD-HDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        85 ~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      .+|.+..+|..++.++...++  +++++.++.++++.+|.+..+|..++.+....+. ++++++++.+++..+|.+..  
T Consensus       103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S--  180 (331)
T 3dss_A          103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--  180 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH--
T ss_pred             hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH--
Confidence            999999999999999999994  9999999999999999999999999999999999 59999999999999999999  


Q ss_pred             HHHHHHHHHHHHHHHH-----hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-----------CChh
Q 043837          162 KAYFALKNLLKKTKSA-----EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-----------GRGK  225 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~  225 (409)
                       +|...+.++..+...     ..-...+.++++++++.+++.++|+    +..+|+.+..++...           +.++
T Consensus       181 -AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~----d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~  255 (331)
T 3dss_A          181 -SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGAGSGRCELSVEKSTVLQ  255 (331)
T ss_dssp             -HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence             899888887765100     0001114589999999999999999    666887665555554           4578


Q ss_pred             HHHHHHHHHHhcChhcHHHHHHHHHHHH---hccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          226 DALSSCTEALNINEELIEALVQRGEAKL---LTEDWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       226 ~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                      ++++.+++++++.|++...+..++.+..   ..+..++...++.+.++++|.....+..+..
T Consensus       256 ~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~  317 (331)
T 3dss_A          256 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  317 (331)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            9999999999999999665555544332   3578889999999999999998776655443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.83  E-value=4.9e-20  Score=148.91  Aligned_cols=169  Identities=15%  Similarity=0.075  Sum_probs=142.1

Q ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837           86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF  165 (409)
Q Consensus        86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  165 (409)
                      +|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++.   .+.
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~---~~~   77 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS---YKS   77 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---HHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---HHH
Confidence            3445567889999999999999999999999999999999999999999999999999999999999999 665   333


Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc--HH
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL--IE  243 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~  243 (409)
                      .++.+....        .....+|+..++++++++|+    +..+++++|.++...|++++|+..|+++++.+|+.  +.
T Consensus        78 ~~~~~~~~~--------~~~~~~a~~~~~~al~~~P~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  145 (176)
T 2r5s_A           78 LIAKLELHQ--------QAAESPELKRLEQELAANPD----NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE  145 (176)
T ss_dssp             HHHHHHHHH--------HHTSCHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred             HHHHHHHHh--------hcccchHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence            333222111        02334579999999999999    67899999999999999999999999999999875  66


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          244 ALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       244 ~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      ++..++.++..+|+.++|+..|++++.
T Consensus       146 a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          146 VKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999999999998875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.83  E-value=1.2e-18  Score=162.13  Aligned_cols=255  Identities=10%  Similarity=0.052  Sum_probs=169.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---HHHhHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CchH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRV---KARNSVAEKELSQLLQAQSTFDSALKLYDSG-----EYTK   73 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~   73 (409)
                      |++++|+..|+++.+.  +++.+++.+|.+|...|++   ++|+..+.+++..  .....+..+..++..+     ++++
T Consensus        17 g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~   92 (452)
T 3e4b_A           17 GDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHE   92 (452)
T ss_dssp             HHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence            5788999999998776  4677888899999888888   8888888888866  6666777887666665     7788


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC---------------------------------------HHHHHHHHH
Q 043837           74 PLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD---------------------------------------YASAISETG  114 (409)
Q Consensus        74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~---------------------------------------~~~A~~~~~  114 (409)
                      |+..|.+ ++..  .++.+++.+|.+|...+.                                       .+.+..+++
T Consensus        93 A~~~~~~-Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~  169 (452)
T 3e4b_A           93 AESLLKK-AFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICK  169 (452)
T ss_dssp             HHHHHHH-HHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred             HHHHHHH-HHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence            8888888 4432  233355555555554443                                       222333344


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH
Q 043837          115 YLLKEDENNLEALLHRGRAYYYLA---DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE  191 (409)
Q Consensus       115 ~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~  191 (409)
                      .+...+|   .+++.+|.+|...|   ++++|+.+|+++....|....   .++.++.++....     ...+++++|+.
T Consensus       170 ~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~---~~~~Lg~~y~~g~-----~~~~d~~~A~~  238 (452)
T 3e4b_A          170 AALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ---RVDSVARVLGDAT-----LGTPDEKTAQA  238 (452)
T ss_dssp             HHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHHHTCGG-----GSSCCHHHHHH
T ss_pred             HHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHhCCC-----CCCCCHHHHHH
Confidence            4444444   38888999998888   889999999999998888877   6778887773311     12268899999


Q ss_pred             HHHHHHccCCCCccchHHHHHHHHHH-H--HHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc-----CHHHHHH
Q 043837          192 DFKAALALDPNHTAHNVHLYLGLCKV-L--VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE-----DWEGAVE  263 (409)
Q Consensus       192 ~~~~al~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----~~~~A~~  263 (409)
                      +|+++.   |.    ++.+++++|.+ +  ...+++++|+.+|+++++.  .++.+++.+|.+|. .|     ++++|+.
T Consensus       239 ~~~~aa---~g----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          239 LLEKIA---PG----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHG---GG----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHc---CC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            999988   66    56688999988 4  4688999999999998865  47889999999988 55     8999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          264 DLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       264 ~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      +|+++.   +.++.+...+..++.
T Consensus       309 ~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          309 HFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHHHHh---CCCHHHHHHHHHHHH
Confidence            999988   778888777776654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.83  E-value=3.7e-19  Score=155.53  Aligned_cols=173  Identities=13%  Similarity=0.049  Sum_probs=158.7

Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      +...-|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+...  
T Consensus       109 l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~--  186 (287)
T 3qou_A          109 LDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY--  186 (287)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH--
T ss_pred             HHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH--
Confidence            445569999999999999999999999999999999999999999999999999999999999999999999996554  


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                       .+...+..+...         ++.++|+..+++++..+|+    +..+++++|.++...|++++|+..|.++++.+|++
T Consensus       187 -~~~~~~~~l~~~---------~~~~~a~~~l~~al~~~P~----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          187 -QGLVAQIELLXQ---------AADTPEIQQLQQQVAENPE----DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             -HHHHHHHHHHHH---------HTSCHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             -HHHHHHHHHHhh---------cccCccHHHHHHHHhcCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence             455555555555         8888999999999999999    78899999999999999999999999999999988


Q ss_pred             --HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          242 --IEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       242 --~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                        ..++..++.++..+|+.++|+..|++++.
T Consensus       253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          253 ADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence              89999999999999999999999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.82  E-value=3e-19  Score=135.40  Aligned_cols=121  Identities=21%  Similarity=0.365  Sum_probs=110.1

Q ss_pred             HHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHH
Q 043837          149 KGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDAL  228 (409)
Q Consensus       149 ~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  228 (409)
                      ++..++|+...   .+..+|..+...         |+|++|+..|+++++++|+    ++.++.++|.++..+|++++|+
T Consensus         4 r~a~inP~~a~---~~~~~G~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~   67 (126)
T 4gco_A            4 RLAYINPELAQ---EEKNKGNEYFKK---------GDYPTAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRAL   67 (126)
T ss_dssp             ---CCCHHHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHCHHHHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHH
Confidence            34457777666   788888777766         9999999999999999999    7889999999999999999999


Q ss_pred             HHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837          229 SSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA  285 (409)
Q Consensus       229 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  285 (409)
                      ..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++.+++..+..+
T Consensus        68 ~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998888765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.81  E-value=2.5e-19  Score=135.91  Aligned_cols=108  Identities=19%  Similarity=0.243  Sum_probs=65.3

Q ss_pred             HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837           83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK  162 (409)
Q Consensus        83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  162 (409)
                      ..++|..+..+..+|.+++..|+|++|+..|+++++++|.++.+|+.+|.++..+|++++|+..|+++++++|++..   
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---   82 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK---   82 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH---
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666555   


Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      +|..+|.++..+         |++++|+..|+++++++|+
T Consensus        83 a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~P~  113 (126)
T 4gco_A           83 GYIRKAACLVAM---------REWSKAQRAYEDALQVDPS  113 (126)
T ss_dssp             HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHCcC
Confidence            555555555444         5555555555555555555

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.80  E-value=1.3e-17  Score=146.23  Aligned_cols=233  Identities=15%  Similarity=0.042  Sum_probs=195.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV   82 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   82 (409)
                      ..++|+..++++|.++|++..+|..++.++..++.                                .+++++.+++. +
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~--------------------------------~l~eEL~~~~~-~  115 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK--------------------------------SLEDELRLMNE-F  115 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------------------------CHHHHHHHHHH-H
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh--------------------------------hHHHHHHHHHH-H
Confidence            45789999999999999999999999998876652                                35667777777 8


Q ss_pred             HhhCCCcHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHc
Q 043837           83 LVFSPACSKAKLLKVKLLLAA-K-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD--------VAQRHFQKGLR  152 (409)
Q Consensus        83 ~~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~al~  152 (409)
                      +..+|.+..+|..++.++... + ++++++..+.++++.+|.+..+|..++.+....+.++        ++++++.+++.
T Consensus       116 L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~  195 (349)
T 3q7a_A          116 AVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR  195 (349)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence            899999999999999999998 7 8999999999999999999999999999999999888        99999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC-------HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh-
Q 043837          153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK-------LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG-  224 (409)
Q Consensus       153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~-  224 (409)
                      .+|.+..   +|...+.++..+         +.       ++++++++++++.++|+    +..+|..+..++...++. 
T Consensus       196 ~dp~N~S---AW~~R~~lL~~l---------~~~~~~~~~~~eELe~~~~aI~~~P~----n~SaW~Ylr~Ll~~~~~~~  259 (349)
T 3q7a_A          196 VDGRNNS---AWGWRWYLRVSR---------PGAETSSRSLQDELIYILKSIHLIPH----NVSAWNYLRGFLKHFSLPL  259 (349)
T ss_dssp             HCTTCHH---HHHHHHHHHTTS---------TTCCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCS
T ss_pred             hCCCCHH---HHHHHHHHHHhc---------cccccchHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCCc
Confidence            9999999   999999888766         54       79999999999999999    677999988888887764 


Q ss_pred             -------------------hHHHHHHHHHHhcC------hhcHHHHHHHHHHHHhccCHHHHHHHHHHHH-hhCCCcHHH
Q 043837          225 -------------------KDALSSCTEALNIN------EELIEALVQRGEAKLLTEDWEGAVEDLKSAA-QQSPQDMNI  278 (409)
Q Consensus       225 -------------------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~  278 (409)
                                         ..-...+...+...      +.++.++..++.+|...++.++|++.++... +.+|-....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~y  339 (349)
T 3q7a_A          260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGY  339 (349)
T ss_dssp             GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHH
Confidence                               23333333333322      4678899999999999999999999999987 678887776


Q ss_pred             HHHHHH
Q 043837          279 REALMR  284 (409)
Q Consensus       279 ~~~l~~  284 (409)
                      +.....
T Consensus       340 w~~~~~  345 (349)
T 3q7a_A          340 WEFRRR  345 (349)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.79  E-value=2e-18  Score=165.94  Aligned_cols=164  Identities=17%  Similarity=0.113  Sum_probs=101.8

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ  148 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  148 (409)
                      |++++|+..|++ +++.+|.+..++..+|.++...|++++|+..|+++++++|++..++..+|.++..+|++++|+.+|+
T Consensus         3 g~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            3 ADGPRELLQLRA-AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            566777777766 6666777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc---CChh
Q 043837          149 KGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL---GRGK  225 (409)
Q Consensus       149 ~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~---~~~~  225 (409)
                      ++++++|++..   ++..++.++...         |++++|+..|+++++++|+    +..++.+++.++..+   |+++
T Consensus        82 ~al~~~p~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~g~~~  145 (568)
T 2vsy_A           82 QASDAAPEHPG---IALWLGHALEDA---------GQAEAAAAAYTRAHQLLPE----EPYITAQLLNWRRRLCDWRALD  145 (568)
T ss_dssp             HHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHHhcCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhccccHH
Confidence            77777777666   666666666665         7777777777777777766    455666777777777   6777


Q ss_pred             HHHHHHHHHHhcChhcHHHHHHHH
Q 043837          226 DALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       226 ~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                      +|+..++++++.+|.+...+..++
T Consensus       146 ~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          146 VLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHhcCCcccChHHHhC
Confidence            777777777777666665555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.79  E-value=1.3e-18  Score=140.61  Aligned_cols=165  Identities=17%  Similarity=0.161  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY  135 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  135 (409)
                      ...+..|..++..|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQT-LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            3456778888888999999999988 8899999999999999999999999999999999999999 8877766665533


Q ss_pred             -hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837          136 -YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL  214 (409)
Q Consensus       136 -~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  214 (409)
                       ..++...|+..+++++..+|++..   ++..++.++...         |++++|+..|+++++.+|+..  ...++.++
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l  150 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFE---LACELAVQYNQV---------GRDEEALELLWNILKVNLGAQ--DGEVKKTF  150 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHTTCTTTT--TTHHHHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCcccC--hHHHHHHH
Confidence             334455689999999999999998   999999999888         999999999999999999732  35589999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHh
Q 043837          215 CKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       215 a~~~~~~~~~~~A~~~~~~al~  236 (409)
                      +.++..+|+.++|+..|++++.
T Consensus       151 ~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          151 MDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=3.7e-19  Score=138.84  Aligned_cols=116  Identities=14%  Similarity=0.118  Sum_probs=90.9

Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                      ..+++++.++|++..   +++.++.++...         |++++|+..|++++.++|+    ++.+|.++|.++..+|++
T Consensus        23 ~~l~~al~l~p~~~~---~~~~lg~~~~~~---------g~~~eA~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~   86 (151)
T 3gyz_A           23 ATLKDINAIPDDMMD---DIYSYAYDFYNK---------GRIEEAEVFFRFLCIYDFY----NVDYIMGLAAIYQIKEQF   86 (151)
T ss_dssp             CCTGGGCCSCHHHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHhCCCHHHHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHccH
Confidence            445566667777766   677777776666         7777777777777777777    566888888888888888


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      ++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++++.|+.+
T Consensus        87 ~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            8888888888888888888888888888888888888888888888888754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.79  E-value=1.5e-16  Score=144.47  Aligned_cols=243  Identities=14%  Similarity=0.017  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHhHHHHHHHHHH------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc------
Q 043837           22 SEAYFHRGSVLRQLCRVKARNSVAEKELSQL------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC------   89 (409)
Q Consensus        22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~------   89 (409)
                      ..++..+|.++...|++++|...+.+.+...      .........+..+...|++++|+..+.+ ++...|..      
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~   92 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ-TEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHhcCcHHHH
Confidence            3567888999999999999999999888732      1234556778889999999999999998 66554332      


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH--H
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKED--------ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS--E  159 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~  159 (409)
                      ..++..+|.++...|++++|+..+++++.+.        |....++..+|.++...|++++|+.++++++.+.+...  .
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            3457889999999999999999999999875        33455778899999999999999999999999877532  1


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc-hHHH--HHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH-NVHL--YLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~--~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      ....+..++.++...         |++++|+.++++++.+.+..... ....  ...++.++...|++++|...+++++.
T Consensus       173 ~~~~~~~la~~~~~~---------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  243 (373)
T 1hz4_A          173 QLQCLAMLIQCSLAR---------GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK  243 (373)
T ss_dssp             GHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            223677777777777         99999999999999874432110 1111  12455668899999999999999998


Q ss_pred             cChhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          237 INEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       237 ~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      ..|..    ...+..++.++...|++++|+..+++++...+.
T Consensus       244 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  285 (373)
T 1hz4_A          244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS  285 (373)
T ss_dssp             CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            76542    346788999999999999999999999887543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.78  E-value=2.6e-18  Score=165.14  Aligned_cols=158  Identities=18%  Similarity=0.126  Sum_probs=134.0

Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 043837          103 AKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS  182 (409)
Q Consensus       103 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  182 (409)
                      .|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..   ++..++.++...        
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~--------   70 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---AVARLGRVRWTQ--------   70 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---HHHHHHHHHHHT--------
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHC--------
Confidence            478999999999999999999999999999999999999999999999999999988   999999999888        


Q ss_pred             cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc---cCHH
Q 043837          183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT---EDWE  259 (409)
Q Consensus       183 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~  259 (409)
                       |++++|+.+|+++++++|+    +..++.++|.++...|++++|+..++++++++|++..++..++.++..+   |+++
T Consensus        71 -g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~  145 (568)
T 2vsy_A           71 -QRHAEAAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD  145 (568)
T ss_dssp             -TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             -CCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHH
Confidence             9999999999999999999    6789999999999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHhhCCCcH
Q 043837          260 GAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       260 ~A~~~~~~al~~~p~~~  276 (409)
                      +|+..++++++.+|++.
T Consensus       146 ~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          146 VLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             HHHHHHHHHHHHTCCCS
T ss_pred             HHHHHHHHHHhcCCccc
Confidence            99999999999998863

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.78  E-value=2.5e-18  Score=146.07  Aligned_cols=212  Identities=13%  Similarity=0.019  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHH-------HHHHHHccCHHHHHHHHHHHHhhCCCCH--
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLK-------VKLLLAAKDYASAISETGYLLKEDENNL--  124 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~p~~~--  124 (409)
                      .....+..|..+ ..+++..|+..|.+ ++..+|..+++|..+       +.++...++..+++..+.+.+.+.|...  
T Consensus         6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~-a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A            6 RLASLFESAVSM-LPMSEARSLDLFTE-ITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred             HHHHHHHHHhcc-cCCCHHHHHHHHHH-HHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence            455667777776 68999999999999 999999999999999       8999999999999999999999877543  


Q ss_pred             -------------------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837          125 -------------------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK  185 (409)
Q Consensus       125 -------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (409)
                                         ++...++.++...|++++|.+.|..++...|++.    ..+.++.++...         ++
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~----~~~~~a~l~~~~---------~r  150 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL----VAWMKAVVYGAA---------ER  150 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH----HHHHHHHHHHHT---------TC
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHc---------CC
Confidence                               3455688999999999999999999988887554    566677666666         99


Q ss_pred             HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--hh-cHHHHHHHHHHHHhccCHHHHH
Q 043837          186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--EE-LIEALVQRGEAKLLTEDWEGAV  262 (409)
Q Consensus       186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~A~  262 (409)
                      |++|+..|+.++...+.  .....+++++|.++..+|++++|+.+|++++...  |. .+++++.+|.++..+|+.++|.
T Consensus       151 ~~dA~~~l~~a~~~~d~--~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~  228 (282)
T 4f3v_A          151 WTDVIDQVKSAGKWPDK--FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV  228 (282)
T ss_dssp             HHHHHHHHTTGGGCSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhhccCCc--ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999988775422  1124589999999999999999999999998654  65 7789999999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHH
Q 043837          263 EDLKSAAQQSPQDMNIREALM  283 (409)
Q Consensus       263 ~~~~~al~~~p~~~~~~~~l~  283 (409)
                      ..|++++..+|+ ..+...|.
T Consensus       229 ~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          229 ALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHhcCCc-HHHHHHHh
Confidence            999999999999 77766653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.78  E-value=1.7e-17  Score=139.53  Aligned_cols=174  Identities=13%  Similarity=0.069  Sum_probs=152.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH---HH
Q 043837           21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK---AK   93 (409)
Q Consensus        21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~---~~   93 (409)
                      .+.+++.+|..+...|++++|+..+.+.+...+    .....+..|..++..|++++|+..|++ ++...|+++.   ++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~-~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDR-FIRLNPTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCcCCCcHHHHH
Confidence            467788999999999999999999999887533    246788899999999999999999999 8888888764   78


Q ss_pred             HHHHHHHHH------------------ccCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHhcC
Q 043837           94 LLKVKLLLA------------------AKDYASAISETGYLLKEDENNLEAL-----------------LHRGRAYYYLA  138 (409)
Q Consensus        94 ~~~a~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~  138 (409)
                      +.+|.++..                  .|++++|+..|+++++.+|+++.++                 +.+|.+|...|
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            889998876                  5799999999999999999987544                 57899999999


Q ss_pred             ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837          139 DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT  204 (409)
Q Consensus       139 ~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  204 (409)
                      ++++|+..|+++++..|+++....++..++.++..+         |++++|+..++.+....|++.
T Consensus       162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~---------g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM---------QMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHCCSCCC
T ss_pred             cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhhCCCch
Confidence            999999999999999999987667899999999888         999999999999999988754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.78  E-value=3.6e-18  Score=150.89  Aligned_cols=206  Identities=12%  Similarity=0.000  Sum_probs=133.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      |++++|..+++++.+..+..         .+...+++++|...+.++             +..+...+++++|+..|.+ 
T Consensus         5 ~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~-   61 (307)
T 2ifu_A            5 QKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQ-   61 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHH-
Confidence            46788888888888776642         011146666665555433             3445566777777777777 


Q ss_pred             HHhhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837           82 VLVFSPA------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--N----LEALLHRGRAYYYLADHDVAQRHFQK  149 (409)
Q Consensus        82 ~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~  149 (409)
                      ++...+.      ...++..+|.+|..+|++++|+.+|++++++.+.  +    ..++..+|.+|.. |++++|+.+|++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            5544332      2457777888888888888888888888877432  1    3467778888877 888888888888


Q ss_pred             HHccCCCc---HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--chHHHHHHHHHHHHHcCCh
Q 043837          150 GLRLDPEH---SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--HNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       150 al~~~p~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~la~~~~~~~~~  224 (409)
                      ++.+.|..   .....++.+++.++..+         |++++|+.+|++++.+.|.+..  ....++..++.++..+|++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  211 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQ---------QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY  211 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence            88765532   12233556666666555         7777777777777776554221  1234566667777777777


Q ss_pred             hHHHHHHHHHHhcChhc
Q 043837          225 KDALSSCTEALNINEEL  241 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~  241 (409)
                      ++|+.+|++++ ++|..
T Consensus       212 ~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          212 VAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHh-CCCCC
Confidence            77777777777 66643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.78  E-value=7.4e-19  Score=137.16  Aligned_cols=121  Identities=10%  Similarity=0.072  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837          106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK  185 (409)
Q Consensus       106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (409)
                      +-.+-..+++++.++|+++.+++.+|.+++..|++++|+..|++++.++|+++.   +|..++.++...         |+
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---~~~~lg~~~~~~---------g~   85 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---YIMGLAAIYQIK---------EQ   85 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TC
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH---------cc
Confidence            333445566777777777777777777777777787888888777777777777   777777777777         77


Q ss_pred             HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837          186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI  242 (409)
Q Consensus       186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  242 (409)
                      +++|+..|+++++++|+    ++.+++++|.++..+|++++|+..|++++++.|+.+
T Consensus        86 ~~~Ai~~~~~al~l~P~----~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           86 FQQAADLYAVAFALGKN----DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHHHSSS----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            78888888888877777    455777888888888888888888888888777654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.77  E-value=2.3e-16  Score=138.46  Aligned_cols=177  Identities=13%  Similarity=0.046  Sum_probs=160.5

Q ss_pred             HHhCCC-chHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-C-Ch
Q 043837           65 LYDSGE-YTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYL-A-DH  140 (409)
Q Consensus        65 ~~~~~~-~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~-~~  140 (409)
                      .+..+. .++|+.++++ ++..+|.+..+|+.++.++..++ .+++++..+.+++..+|++..+|..++.++..+ + ++
T Consensus        63 ~~~~~e~se~AL~lt~~-~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           63 IAAKEEKSERALELTEI-IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHHTTCCSHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HHHhCCCCHHHHHHHHH-HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence            334444 4689999998 99999999999999999999999 599999999999999999999999999999998 8 89


Q ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH--------HHHHHHHHHHccCCCCccchHHHHH
Q 043837          141 DVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLR--------VAVEDFKAALALDPNHTAHNVHLYL  212 (409)
Q Consensus       141 ~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~  212 (409)
                      ++++..+.+++..+|.+..   +|...+.+...+         +.++        +++++++++++.+|.    +..+|.
T Consensus       142 ~~EL~~~~k~L~~dpkNy~---AW~~R~wvl~~l---------~~~~~~~~~~~~eELe~~~k~I~~dp~----N~SAW~  205 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPKNYH---TWAYLHWLYSHF---------STLGRISEAQWGSELDWCNEMLRVDGR----NNSAWG  205 (349)
T ss_dssp             HHHHHHHHHHTSSCTTCHH---HHHHHHHHHHHH---------HHTTCCCHHHHHHHHHHHHHHHHHCTT----CHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh---------ccccccchhhHHHHHHHHHHHHHhCCC----CHHHHH
Confidence            9999999999999999999   888888888877         5555        999999999999999    788999


Q ss_pred             HHHHHHHHcCC-------hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837          213 GLCKVLVKLGR-------GKDALSSCTEALNINEELIEALVQRGEAKLLTEDW  258 (409)
Q Consensus       213 ~la~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  258 (409)
                      .++.++..++.       ++++++++++++..+|++..+|..+..++...++.
T Consensus       206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            99999999987       68999999999999999999999988888877654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.77  E-value=2.9e-16  Score=156.62  Aligned_cols=229  Identities=15%  Similarity=0.070  Sum_probs=130.7

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837           20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL   99 (409)
Q Consensus        20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~   99 (409)
                      +.+.+|+.+|.++...|++++|+..|.++    .....+++.+..+.+.|+|++|+++|.. +.+..+. +.+...+|.+
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~m-Ark~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQM-ARKKARE-SYVETELIFA 1176 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhccc-ccccHHHHHH
Confidence            33444555555555555555554444332    2233334444444445555555555544 3333311 1122234444


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 043837          100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED  179 (409)
Q Consensus       100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~  179 (409)
                      |.+++++++ ++.|.     ...+...+..+|..+...|+|++|+.+|.++        .   .|..++.++..+     
T Consensus      1177 YAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~---ny~rLA~tLvkL----- 1234 (1630)
T 1xi4_A         1177 LAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S---NFGRLASTLVHL----- 1234 (1630)
T ss_pred             HHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------h---HHHHHHHHHHHh-----
Confidence            444444442 22221     1122334455666666666666666666664        1   455555555555     


Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHH
Q 043837          180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWE  259 (409)
Q Consensus       180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  259 (409)
                          |++++|++.++++.         +..+|...+.++...+++..|..+... +..+   ++.+..++..|...|.++
T Consensus      1235 ----ge~q~AIEaarKA~---------n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A         1235 ----GEYQAAVDGARKAN---------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFE 1297 (1630)
T ss_pred             ----CCHHHHHHHHHHhC---------CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHH
Confidence                66666666666661         234666666666666666666665553 3333   445558888999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Q 043837          260 GAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK  293 (409)
Q Consensus       260 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  293 (409)
                      +|+..++.++.++|.+..+...+..+....+..+
T Consensus      1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A         1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred             HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence            9999999999999999999988888776655443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=2.1e-17  Score=144.33  Aligned_cols=168  Identities=18%  Similarity=0.172  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      .....+..|..+...|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXD-AWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHH-HHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            345667888888889999999999998 8999999999999999999999999999999999999999877777788888


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                      +...++.++|+..+++++..+|++..   ++..++.++...         |++++|+..|.++++.+|++.  ...++.+
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~---~~~~la~~l~~~---------g~~~~A~~~l~~~l~~~p~~~--~~~a~~~  260 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAA---LATQLALQLHQV---------GRNEEALELLFGHLRXDLTAA--DGQTRXT  260 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTTGG--GGHHHHH
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHH---HHHHHHHHHHHc---------ccHHHHHHHHHHHHhcccccc--cchHHHH
Confidence            99999999999999999999999999   999999999888         999999999999999999842  2779999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHh
Q 043837          214 LCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       214 la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      ++.++..+|+.++|+..|++++.
T Consensus       261 l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          261 FQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.77  E-value=7.3e-17  Score=134.28  Aligned_cols=192  Identities=13%  Similarity=0.014  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 043837           72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA----DHDVAQRHF  147 (409)
Q Consensus        72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~  147 (409)
                      .+|+..|.+ +.+  ..++.+++.+|.++...+++++|+.+|+++++.  .++.+++.+|.+|.. +    ++++|+.+|
T Consensus         3 ~eA~~~~~~-aa~--~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            3 TEPGSQYQQ-QAE--AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             -CTTHHHHH-HHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             chHHHHHHH-HHH--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            356777777 443  378999999999999999999999999999875  679999999999998 7    899999999


Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCC
Q 043837          148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGR  223 (409)
Q Consensus       148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~  223 (409)
                      ++++.  +.++.   ++..++.++..-.     -..+++++|+.+|+++++..|.+.  .+.+++++|.+|..    .++
T Consensus        77 ~~A~~--~g~~~---a~~~Lg~~y~~g~-----g~~~d~~~A~~~~~~A~~~~~~~~--~~~a~~~Lg~~y~~g~g~~~d  144 (212)
T 3rjv_A           77 EKAVE--AGSKS---GEIVLARVLVNRQ-----AGATDVAHAITLLQDAARDSESDA--AVDAQMLLGLIYASGVHGPED  144 (212)
T ss_dssp             HHHHH--TTCHH---HHHHHHHHHTCGG-----GSSCCHHHHHHHHHHHTSSTTSHH--HHHHHHHHHHHHHHTSSSSCC
T ss_pred             HHHHH--CCCHH---HHHHHHHHHHcCC-----CCccCHHHHHHHHHHHHHcCCCcc--hHHHHHHHHHHHHcCCCCCCC
Confidence            99965  46666   8889998876400     002899999999999999988310  47799999999999    899


Q ss_pred             hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-c-----CHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          224 GKDALSSCTEALNINEELIEALVQRGEAKLLT-E-----DWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                      +++|+.+|+++++. |.++.+++.+|.+|... +     ++++|+.+|+++.+...  ..+...+..
T Consensus       145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~  208 (212)
T 3rjv_A          145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR  208 (212)
T ss_dssp             HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999998 66778999999999864 3     89999999999999853  444444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.76  E-value=3e-18  Score=133.90  Aligned_cols=131  Identities=17%  Similarity=0.116  Sum_probs=110.3

Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                      ..|++++.++|++..   .++.++.++...         |++++|+..|++++.++|+    +..+|.++|.++...|++
T Consensus         8 ~~~~~al~~~p~~~~---~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~   71 (148)
T 2vgx_A            8 GTIAMLNEISSDTLE---QLYSLAFNQYQS---------GXYEDAHXVFQALCVLDHY----DSRFFLGLGACRQAMGQY   71 (148)
T ss_dssp             CSHHHHTTCCHHHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHcCCHhhHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHHcCcc----cHHHHHHHHHHHHHHhhH
Confidence            457778888887777   777777777666         8888888888888888888    677899999999999999


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      ++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...++.
T Consensus        72 ~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           72 DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887766666666555543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.76  E-value=1.3e-17  Score=144.94  Aligned_cols=211  Identities=15%  Similarity=0.080  Sum_probs=159.0

Q ss_pred             hCCCchHHHHHHHHHHHh--------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHH
Q 043837           67 DSGEYTKPLEYIDKVVLV--------FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--------DENNLEALLHR  130 (409)
Q Consensus        67 ~~~~~~~A~~~~~~~~~~--------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l  130 (409)
                      ..+++++|+.+|++ ++.        ..|..+.++..+|.++...|++++|+..+++++++        +|....++..+
T Consensus        13 ~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           13 GLVPRGSAVPLCKQ-ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             CCSCSSSHHHHHHH-HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34666666666666 333        23667889999999999999999999999999987        35567789999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHccC-----CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc------
Q 043837          131 GRAYYYLADHDVAQRHFQKGLRLD-----PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL------  199 (409)
Q Consensus       131 ~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------  199 (409)
                      |.++...|++++|+.++++++.+.     ++++....++..++.++...         |++++|+.++++++++      
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~  162 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ---------GKAEEVEYYYRRALEIYATRLG  162 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999873     44455555888888888777         9999999999999998      


Q ss_pred             --CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---------hhcHHHHHHHHHHHHhccC------HHHHH
Q 043837          200 --DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN---------EELIEALVQRGEAKLLTED------WEGAV  262 (409)
Q Consensus       200 --~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~------~~~A~  262 (409)
                        .|.    ...++.++|.++...|++++|+..+++++++.         +.....+..++..+...+.      +.++.
T Consensus       163 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (283)
T 3edt_B          163 PDDPN----VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG  238 (283)
T ss_dssp             TTCHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred             CCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence              444    78899999999999999999999999999873         3445566667766665444      44444


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          263 EDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       263 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      ..++.+....|....+...++.+....+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~  267 (283)
T 3edt_B          239 SWYKACKVDSPTVNTTLRSLGALYRRQGK  267 (283)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence            44444444445555666666666655544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.76  E-value=5.7e-17  Score=143.15  Aligned_cols=184  Identities=17%  Similarity=0.106  Sum_probs=151.1

Q ss_pred             CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCChH
Q 043837           68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLHRGRAYYYLADHD  141 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~  141 (409)
                      .+++++|+.+|.+ +              +.++...|++++|+..|.+++++.+..      ..++..+|.+|..+|+++
T Consensus        29 ~~~~~~A~~~~~~-a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~   93 (307)
T 2ifu_A           29 KPDYDSAASEYAK-A--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP   93 (307)
T ss_dssp             SCCHHHHHHHHHH-H--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             CCCHHHHHHHHHH-H--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence            5788888888876 2              678889999999999999999986532      457889999999999999


Q ss_pred             HHHHHHHHHHccCCCcH---HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--cchHHHHHHHHH
Q 043837          142 VAQRHFQKGLRLDPEHS---ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--AHNVHLYLGLCK  216 (409)
Q Consensus       142 ~A~~~~~~al~~~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~la~  216 (409)
                      +|+.+|++++.+.+...   ....++.+++.++         .. |++++|+.+|++++.+.|...  .....++.++|.
T Consensus        94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~---------~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  163 (307)
T 2ifu_A           94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLM---------EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR  163 (307)
T ss_dssp             GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---------TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            99999999998754321   2233555555544         34 999999999999999877532  124678999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          217 VLVKLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       217 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      ++..+|++++|+.+|++++.+.|.+      ..++..++.++..+|++++|+.+|++++ ++|+...
T Consensus       164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            9999999999999999999986654      3578889999999999999999999999 9997654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.75  E-value=1.8e-16  Score=136.43  Aligned_cols=250  Identities=11%  Similarity=0.045  Sum_probs=185.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTL-SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYID   79 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   79 (409)
                      +|+|..++...   -++.|.+ ....+.+.++|+.+|++....       ...+ ....+..-..++. ++   |+..++
T Consensus        26 ~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~-~~~a~~~la~~~~-~~---a~~~l~   90 (310)
T 3mv2_B           26 TGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSK-LGKVLDLYVQFLD-TK---NIEELE   90 (310)
T ss_dssp             TTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSST-THHHHHHHHHHHT-TT---CCHHHH
T ss_pred             hhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC-------CCCH-HHHHHHHHHHHhc-cc---HHHHHH
Confidence            58899888844   3344443 356677889999999986432       0000 0001111112222 22   788888


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC-
Q 043837           80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE--NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE-  156 (409)
Q Consensus        80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-  156 (409)
                      + .+...+....++..+|.++...|++++|+..+.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.+.+|+ 
T Consensus        91 ~-l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~  169 (310)
T 3mv2_B           91 N-LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT  169 (310)
T ss_dssp             H-TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred             H-HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            7 5555556677778999999999999999999999999987  88999999999999999999999999999999884 


Q ss_pred             ---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837          157 ---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE  233 (409)
Q Consensus       157 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  233 (409)
                         +..   .+..++..+..+..     ..+++.+|..+|+++....|+..  ....+++   ++..+|++++|...++.
T Consensus       170 ~~~~d~---~l~~Laea~v~l~~-----g~~~~q~A~~~f~El~~~~p~~~--~~~lLln---~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          170 VSGDNE---MILNLAESYIKFAT-----NKETATSNFYYYEELSQTFPTWK--TQLGLLN---LHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHH-----TCSTTTHHHHHHHHHHTTSCSHH--HHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred             cccchH---HHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhCCCcc--cHHHHHH---HHHHcCCHHHHHHHHHH
Confidence               122   34444444322211     11389999999999988888611  2234444   89999999999999998


Q ss_pred             HHhc----------ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          234 ALNI----------NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       234 al~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      +++.          +|+++.++.+++.+...+|+  +|.++++++.+.+|+++-+...
T Consensus       237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence            8876          47899999999999999998  8999999999999999886543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=2e-18  Score=154.94  Aligned_cols=243  Identities=14%  Similarity=0.056  Sum_probs=113.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      +|+.++|.++++++     +.+.+|..+|.++...|++++|+..+.+.    .....+...+..+...|++++|+.++..
T Consensus        16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            35678888888887     34569999999999999999999999763    3344556666677778999999998876


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                       +.+.. .++.+...++.+|.++|++.++.+.++.     |+ ..+|..+|..++..|.|++|+.+|.++        . 
T Consensus        87 -ark~~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~-  149 (449)
T 1b89_A           87 -ARKKA-RESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------S-  149 (449)
T ss_dssp             ------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------T-
T ss_pred             -HHHhC-ccchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------h-
Confidence             55543 3377888999999999999999887753     54 459999999999999999999999987        1 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                        .|..++.++..+         |+|++|++.+.++     .    ++.+|...+.++...|+++.|..+... +..+|+
T Consensus       150 --n~~~LA~~L~~L---------g~yq~AVea~~KA-----~----~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad  208 (449)
T 1b89_A          150 --NFGRLASTLVHL---------GEYQAAVDGARKA-----N----STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD  208 (449)
T ss_dssp             --CHHHHHHHHHTT---------TCHHHHHHHHHHH-----T----CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH
T ss_pred             --hHHHHHHHHHHh---------ccHHHHHHHHHHc-----C----CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh
Confidence              678888888888         9999999999999     2    456999999999999999999887775 446676


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK  293 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  293 (409)
                      +.   ..+..+|.+.|++++|+.++++++.+++.+..+...+..++...+..+
T Consensus       209 ~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k  258 (449)
T 1b89_A          209 EL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK  258 (449)
T ss_dssp             HH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             hH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH
Confidence            63   358889999999999999999999999999999999888776655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=1.5e-17  Score=157.98  Aligned_cols=195  Identities=10%  Similarity=-0.011  Sum_probs=176.8

Q ss_pred             HHHhCCCc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837           64 KLYDSGEY-TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD----------YASAISETGYLLKEDENNLEALLHRGR  132 (409)
Q Consensus        64 ~~~~~~~~-~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~  132 (409)
                      .....+++ ++|+..+++ ++..+|.+..+|+.++.++...++          +++++..++++++.+|++..+|+.++.
T Consensus        37 ~~~~~~~~~eeal~~~~~-~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w  115 (567)
T 1dce_A           37 QKRQAGELDESVLELTSQ-ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  115 (567)
T ss_dssp             HHHHTTCCSHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHH-HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455665 567999998 999999999999999999999998          999999999999999999999999999


Q ss_pred             HHHhcC--ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC-CHHHHHHHHHHHHccCCCCccchHH
Q 043837          133 AYYYLA--DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG-KLRVAVEDFKAALALDPNHTAHNVH  209 (409)
Q Consensus       133 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~  209 (409)
                      ++...+  ++++++..+.++++.+|.+..   +|...+.+....         + .+++++++++++++.+|.    +..
T Consensus       116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~---aW~~R~~~l~~l---------~~~~~~el~~~~~~I~~~p~----n~s  179 (567)
T 1dce_A          116 LLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQA---------AVAPAEELAFTDSLITRNFS----NYS  179 (567)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------CCCHHHHHHHHHTTTTTTCC----CHH
T ss_pred             HHHHcccccHHHHHHHHHHHHhhcccccc---HHHHHHHHHHHc---------CCChHHHHHHHHHHHHHCCC----Ccc
Confidence            999999  679999999999999999999   899999888887         8 899999999999999999    788


Q ss_pred             HHHHHHHHHHHc--------------CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHH------------HHH
Q 043837          210 LYLGLCKVLVKL--------------GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEG------------AVE  263 (409)
Q Consensus       210 ~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~------------A~~  263 (409)
                      +|..++.++..+              +.++++++++.+++.++|++..+|+.++.++...+++++            |+.
T Consensus       180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  259 (567)
T 1dce_A          180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSV  259 (567)
T ss_dssp             HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEE
T ss_pred             HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEE
Confidence            999999999885              557999999999999999999999999999999998776            666


Q ss_pred             HHHHHHhhCCCc
Q 043837          264 DLKSAAQQSPQD  275 (409)
Q Consensus       264 ~~~~al~~~p~~  275 (409)
                      +|.+++.++|..
T Consensus       260 ~f~~~i~~~~~~  271 (567)
T 1dce_A          260 CFSRPLTVGSRM  271 (567)
T ss_dssp             EEEEEECTTBTT
T ss_pred             Eeccceeccccc
Confidence            678888777763

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.74  E-value=2.6e-18  Score=153.51  Aligned_cols=157  Identities=15%  Similarity=0.033  Sum_probs=132.6

Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH------------HHHHHHHHHHH
Q 043837          102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS------------ELKKAYFALKN  169 (409)
Q Consensus       102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~~~~l~~  169 (409)
                      .++++++|+..+++++..+|..+.++..+|.+++..|++++|+..|++++.++|++.            ....++.+++.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            456777788888888888888888888888888888888888888888888888772            01127788888


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                      ++...         |++++|+.+|+++++++|+    +..+++++|.++..+|++++|+.+|+++++++|++..++..++
T Consensus       205 ~~~~~---------g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  271 (336)
T 1p5q_A          205 CHLKL---------QAFSAAIESCNKALELDSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA  271 (336)
T ss_dssp             HHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHc---------CCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            87777         9999999999999999998    7779999999999999999999999999999999999999999


Q ss_pred             HHHHhccCHHHH-HHHHHHHHhh
Q 043837          250 EAKLLTEDWEGA-VEDLKSAAQQ  271 (409)
Q Consensus       250 ~~~~~~~~~~~A-~~~~~~al~~  271 (409)
                      .++..++++++| ...|++++..
T Consensus       272 ~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          272 VCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988 5567777654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.73  E-value=1.9e-17  Score=128.48  Aligned_cols=131  Identities=22%  Similarity=0.170  Sum_probs=116.1

Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                      ..|++++.++|++..   .++.++.++...         |++++|+..|++++..+|+    +..+|..+|.++...|++
T Consensus         5 ~~l~~al~~~p~~~~---~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~   68 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLE---QLYALGFNQYQA---------GKWDDAQKIFQALCMLDHY----DARYFLGLGACRQSLGLY   68 (142)
T ss_dssp             ----CCTTCCHHHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHcCCHHHHH---HHHHHHHHHHHH---------ccHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHHhhH
Confidence            567788888888877   888888888777         9999999999999999999    778999999999999999


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      ++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.......++...++.
T Consensus        69 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA  135 (142)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988877776666665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.73  E-value=1.5e-17  Score=144.80  Aligned_cols=194  Identities=11%  Similarity=0.056  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY  135 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  135 (409)
                      ...+..|..++..|++++|+..|.+ ++..+|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGR-AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3455666677777778888888887 788889999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC  215 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la  215 (409)
                      .+|++++|+..|++++.++|++..   .+..........            .++...........|.+    ..+...++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~----~~i~~~l~  144 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQRL---NFGDDIPSALRI------------AKKKRWNSIEERRIHQE----SELHSYLT  144 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTC---CCCSHHHHHHHH------------HHHHHHHHHHHTCCCCC----CHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchh---hHHHHHHHHHHH------------HHHHHHHHHHHHHHhhh----HHHHHHHH
Confidence            999999999999999988886532   111000110011            11112222222344442    23444445


Q ss_pred             HHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhh
Q 043837          216 KVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT-EDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       216 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~  271 (409)
                      .++  .|++++|++.++++++++|++......++.++... +.+++|.+.|.++.+.
T Consensus       145 ~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          145 RLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            443  68889999999999999998888888787777766 6788888888887664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.73  E-value=6.3e-17  Score=137.44  Aligned_cols=201  Identities=11%  Similarity=-0.029  Sum_probs=161.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHR-------GSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKP   74 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A   74 (409)
                      +++..|+..|.++++++|+..++|..+       +.++..+++..+++..+.                            
T Consensus        20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~----------------------------   71 (282)
T 4f3v_A           20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS----------------------------   71 (282)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH----------------------------
T ss_pred             CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH----------------------------
Confidence            578999999999999999999999999       666666655544433332                            


Q ss_pred             HHHHHHHHHhhCCCc---------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           75 LEYIDKVVLVFSPAC---------------------SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        75 ~~~~~~~~~~~~p~~---------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                           + .+.+.|..                     ..++..++.++...|+|++|.+.|..++...|.+. +++.+|.+
T Consensus        72 -----~-~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l  144 (282)
T 4f3v_A           72 -----G-SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVV  144 (282)
T ss_dssp             -----H-TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHH
T ss_pred             -----H-HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHH
Confidence                 2 33333322                     45667789999999999999999999999999888 99999999


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                      ++..++|++|+..|+.++... ++.....+++.++.++..+         |++++|+.+|++++... ..|.....++++
T Consensus       145 ~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L---------G~~~eAl~~l~~a~~g~-~~P~~~~da~~~  213 (282)
T 4f3v_A          145 YGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL---------ALFTEAERRLTEANDSP-AGEACARAIAWY  213 (282)
T ss_dssp             HHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTST-TTTTTHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHhcCC-CCccccHHHHHH
Confidence            999999999999999877653 2222223789999999888         99999999999998543 212225668999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          214 LCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       214 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                      +|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus       214 ~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          214 LAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            999999999999999999999999998 77665553

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.72  E-value=7.6e-17  Score=140.30  Aligned_cols=179  Identities=13%  Similarity=0.079  Sum_probs=146.9

Q ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837           87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA  166 (409)
Q Consensus        87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  166 (409)
                      |.++..+..+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++++.++|++..   ++..
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~   77 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHFF   77 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---HHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccch-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHH
Q 043837          167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN-VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEAL  245 (409)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  245 (409)
                      ++.++...         |++++|+..|+++++++|+++... ..++..+  .      ..++..+........|.+..+.
T Consensus        78 lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~i~  140 (281)
T 2c2l_A           78 LGQCQLEM---------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--R------IAKKKRWNSIEERRIHQESELH  140 (281)
T ss_dssp             HHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--H------HHHHHHHHHHHHTCCCCCCHHH
T ss_pred             HHHHHHHc---------CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--H------HHHHHHHHHHHHHHHhhhHHHH
Confidence            99999888         999999999999999999753211 1122111  1      1223333334445667777777


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          246 VQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       246 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      ..++.++  .|++++|++.++++++++|++..+...+.....
T Consensus       141 ~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  180 (281)
T 2c2l_A          141 SYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEA  180 (281)
T ss_dssp             HHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHH
Confidence            7777665  799999999999999999998877776655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.72  E-value=6.7e-16  Score=135.34  Aligned_cols=177  Identities=19%  Similarity=0.099  Sum_probs=147.4

Q ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHccCCCc---
Q 043837           87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH---  157 (409)
Q Consensus        87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---  157 (409)
                      |.....+...+..+...|++++|++.+.++++..|....      .++.+|.++...|++++|+.++++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            445566778889999999999999999999998877543      45678999999999999999999999875443   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc---cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837          158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA---LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  234 (409)
                      .....++..+|.++...         |++++|+.+|+++++   ..|+++.....+++++|.+|..+|++++|+.+++++
T Consensus       152 ~~~~~~~~~lg~~y~~~---------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          152 YQNLYIENAIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             THHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            22334788888888777         999999999999994   455543323479999999999999999999999999


Q ss_pred             HhcChh------cHHHHHHHHHHHHhccCHHHH-HHHHHHHHhhC
Q 043837          235 LNINEE------LIEALVQRGEAKLLTEDWEGA-VEDLKSAAQQS  272 (409)
Q Consensus       235 l~~~p~------~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~  272 (409)
                      +++.++      ...+++.+|.+|..+|++++| ..++++++.+.
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            988654      378999999999999999999 88899998764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.72  E-value=1e-17  Score=130.83  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=60.6

Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      ++..+|.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.  
T Consensus        13 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--   90 (148)
T 2vgx_A           13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR--   90 (148)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH--
T ss_pred             HHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch--
Confidence            455555555555555555555555555555555555555555555555555555555555555555555555555555  


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                       +++.++.++...         |++++|+..|++++++.|+
T Consensus        91 -~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           91 -FPFHAAECLLQX---------GELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             -HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHc---------CCHHHHHHHHHHHHHHCcC
Confidence             455555555444         5555555555555555554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.72  E-value=6.6e-16  Score=118.03  Aligned_cols=133  Identities=32%  Similarity=0.467  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837          126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA  205 (409)
Q Consensus       126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  205 (409)
                      +++.+|.++...|++++|+..+++++..+|++..   .+..++.++...         +++++|+..+++++...|.   
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~~~---   67 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQ---------GDYDEAIEYYQKALELDPR---   67 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh---HHHHHHHHHHHh---------cCHHHHHHHHHHHHHHCCC---
Confidence            3445555555555555555555555555555544   455555555444         5556666666665555555   


Q ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                       ...++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|+..++++++.+|+
T Consensus        68 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           68 -SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             -chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence             44466666777777777777777777777777777777777777777777777777777777776664

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.71  E-value=2.2e-17  Score=147.44  Aligned_cols=153  Identities=16%  Similarity=0.093  Sum_probs=132.5

Q ss_pred             CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 043837           68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---------------LEALLHRGR  132 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~  132 (409)
                      ..++++|+..+.. ++..+|..+.++..+|.+++..|++++|+..|++++.++|++               ..+++++|.
T Consensus       126 L~~~~~A~~~~~~-a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          126 LKSFEKAKESWEM-NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEECCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3556667777766 667778888999999999999999999999999999999988               688999999


Q ss_pred             HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837          133 AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL  212 (409)
Q Consensus       133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  212 (409)
                      ++..+|++++|+.+|++++.++|++..   +++.++.++..+         |++++|+..|+++++++|+    +..++.
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~P~----~~~a~~  268 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEK---GLSRRGEAHLAV---------NDFELARADFQKVLQLYPN----NKAAKT  268 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCSS----CHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHCCC----CHHHHH
Confidence            999999999999999999999999988   889999988888         9999999999999999998    677999


Q ss_pred             HHHHHHHHcCChhHH-HHHHHHHHhc
Q 043837          213 GLCKVLVKLGRGKDA-LSSCTEALNI  237 (409)
Q Consensus       213 ~la~~~~~~~~~~~A-~~~~~~al~~  237 (409)
                      +++.++..++++++| ...|.+++..
T Consensus       269 ~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          269 QLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888 4566666543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.71  E-value=4e-17  Score=125.62  Aligned_cols=126  Identities=15%  Similarity=0.100  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      .++.+......+..++..|+|++|+..|+++++++|+++.        ....+|.++|.++..+|++++|+.+|+++|++
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3445555555666666669999999999999999998321        13459999999999999999999999999999


Q ss_pred             -------ChhcHHHH----HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          238 -------NEELIEAL----VQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       238 -------~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                             +|+++.+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+...++.
T Consensus        87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~  151 (159)
T 2hr2_A           87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID  151 (159)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred             hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence                   99999999    9999999999999999999999999999998887777777665543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.70  E-value=5.5e-17  Score=125.92  Aligned_cols=119  Identities=20%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH
Q 043837          112 ETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE  191 (409)
Q Consensus       112 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~  191 (409)
                      .|++++.++|++...++.+|.++...|++++|+..|++++..+|++..   +|..++.++...         |++++|+.
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~---------g~~~~A~~   73 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---YFLGLGACRQSL---------GLYEQALQ   73 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHH---------hhHHHHHH
Confidence            344455555555555555555555555555555555555555555555   555555555444         55555555


Q ss_pred             HHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837          192 DFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV  246 (409)
Q Consensus       192 ~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  246 (409)
                      .|++++.++|+    ++.+++++|.++..+|++++|+..|+++++++|+++....
T Consensus        74 ~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           74 SYSYGALMDIN----EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             HHHHHHHHCTT----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHhcCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence            55555555555    3345556666666666666666666666665555544333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.70  E-value=9.4e-16  Score=117.17  Aligned_cols=134  Identities=31%  Similarity=0.403  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      .+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...+++++|+..+++++...|.+..   .+..++.+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~   78 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH---HHHHHHHH
Confidence            457778888888888888888888888888888888888888888888888888888888888888776   67777777


Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                      +...         |++++|+..+++++...|.    ...++..++.++...|++++|+..+++++..+|+
T Consensus        79 ~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           79 YYKQ---------GDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHTT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHh---------cCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            6666         8888888888888888887    5668888888888888888888888888888775

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.70  E-value=2.2e-15  Score=125.30  Aligned_cols=189  Identities=14%  Similarity=-0.008  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 043837            5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLV   84 (409)
Q Consensus         5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   84 (409)
                      .+|+..|+++.+.  .++.+++.+|.+|...++++                                 +|+.+|++ +..
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~---------------------------------~A~~~~~~-a~~   46 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQ---------------------------------KAEYWAQK-AAA   46 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHH---------------------------------HHHHHHHH-HHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHH---------------------------------HHHHHHHH-HHH
Confidence            4678888888876  67888888888887665544                                 45555544 332


Q ss_pred             hCCCcHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC
Q 043837           85 FSPACSKAKLLKVKLLLAAK----DYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQRHFQKGLRLDPE  156 (409)
Q Consensus        85 ~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~  156 (409)
                        +.++.+++.+|.+|.. +    ++++|+.+|+++++  +.++.+++.+|.+|..    .+++++|+.+|++++...|.
T Consensus        47 --~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  121 (212)
T 3rjv_A           47 --QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES  121 (212)
T ss_dssp             --TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred             --cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence              3578899999999988 7    89999999999965  5789999999999998    89999999999999998874


Q ss_pred             --cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-C-----ChhHHH
Q 043837          157 --HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-G-----RGKDAL  228 (409)
Q Consensus       157 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-~-----~~~~A~  228 (409)
                        ++.   ++..++.++..-.     -..+++++|+.+|+++++. |.    +..+++++|.+|... +     ++++|+
T Consensus       122 ~~~~~---a~~~Lg~~y~~g~-----g~~~d~~~A~~~~~~A~~~-~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~  188 (212)
T 3rjv_A          122 DAAVD---AQMLLGLIYASGV-----HGPEDDVKASEYFKGSSSL-SR----TGYAEYWAGMMFQQGEKGFIEPNKQKAL  188 (212)
T ss_dssp             HHHHH---HHHHHHHHHHHTS-----SSSCCHHHHHHHHHHHHHT-SC----TTHHHHHHHHHHHHCBTTTBCCCHHHHH
T ss_pred             cchHH---HHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHcCCCCCCCCCHHHHH
Confidence              355   8899999887610     0018999999999999998 44    345889999999864 3     899999


Q ss_pred             HHHHHHHhcChhcHHHHHHHH
Q 043837          229 SSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       229 ~~~~~al~~~p~~~~~~~~la  249 (409)
                      .+|+++++...  ..+...++
T Consensus       189 ~~~~~A~~~g~--~~A~~~l~  207 (212)
T 3rjv_A          189 HWLNVSCLEGF--DTGCEEFD  207 (212)
T ss_dssp             HHHHHHHHHTC--HHHHHHHH
T ss_pred             HHHHHHHHcCC--HHHHHHHH
Confidence            99999998743  34444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6e-16  Score=117.30  Aligned_cols=113  Identities=16%  Similarity=0.272  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI  242 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  242 (409)
                      .+..+|..+...         |++++|+..|+++++++|+    +..++.++|.++..+|++++|+..++++++++|+++
T Consensus         6 ~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (126)
T 3upv_A            6 EARLEGKEYFTK---------SDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV   72 (126)
T ss_dssp             HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            566666666555         9999999999999999999    778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHH
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQS------PQDMNIREALMRAEKA  288 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  288 (409)
                      .+++.+|.++..+|++++|+..|+++++++      |++..+...+..+...
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999      9999988888877654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.69  E-value=9.8e-16  Score=127.47  Aligned_cols=135  Identities=20%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      .++.+|.++...|++++|+..|++++  +| ++.+++.+|.++...|++++|+..|++++.++|++..   ++..++.++
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---AYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---HHHHHHHHH
Confidence            34555566666666666666666554  22 4555666666666666666666666666666665555   555555555


Q ss_pred             HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA------------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                      ...         |++++|+..|++++++.|.+..            ....+++++|.++...|++++|+..++++++++|
T Consensus        82 ~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           82 YQT---------EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHT---------TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHc---------ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            555         6666666666666665555321            1345555566666666666666666666665555


Q ss_pred             hc
Q 043837          240 EL  241 (409)
Q Consensus       240 ~~  241 (409)
                      ++
T Consensus       153 ~~  154 (213)
T 1hh8_A          153 EP  154 (213)
T ss_dssp             SG
T ss_pred             cc
Confidence            43

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.68  E-value=1.2e-14  Score=145.17  Aligned_cols=233  Identities=12%  Similarity=0.055  Sum_probs=156.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      +|++++|+..|.++     +++..|..++.++.++|++++|+..+..+.............+..+.+.+++++ ++.|.+
T Consensus      1118 ~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI~ 1191 (1630)
T 1xi4_A         1118 KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFIN 1191 (1630)
T ss_pred             CCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHHh
Confidence            47899999999876     889999999999999999999999998877655443333457788888888774 444422


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837           81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL  160 (409)
Q Consensus        81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  160 (409)
                           .++ ...+..+|.++...|+|++|+.+|.++        ..|..++.++..+|++++|++.++++..     .. 
T Consensus      1192 -----~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n-----~~- 1251 (1630)
T 1xi4_A         1192 -----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS-----TR- 1251 (1630)
T ss_pred             -----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-----HH-
Confidence                 333 455667999999999999999999986        4788899999999999999999998833     23 


Q ss_pred             HHHHHHHHHHHHHH---------------------HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837          161 KKAYFALKNLLKKT---------------------KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV  219 (409)
Q Consensus       161 ~~~~~~l~~~~~~~---------------------~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~  219 (409)
                        +|..++.+....                     ..+..+...|.+++|+.+++.++.+++.    ....+..++.++.
T Consensus      1252 --aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera----H~gmftELaiLya 1325 (1630)
T 1xi4_A         1252 --TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA----HMGMFTELAILYS 1325 (1630)
T ss_pred             --HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh----HhHHHHHHHHHHH
Confidence              444444443332                     1122223335666666666666665555    4445555555544


Q ss_pred             Hc--CChhHHHHHHHHHHhcCh-----hcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837          220 KL--GRGKDALSSCTEALNINE-----ELIEALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       220 ~~--~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~  265 (409)
                      +-  ++..++++.|...+.+.|     .+...|..+..+|.+-++|+.|+...
T Consensus      1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A         1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred             hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            32  344555555555555544     45555555556666666666555433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.68  E-value=6.3e-17  Score=133.25  Aligned_cols=171  Identities=17%  Similarity=0.139  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN  169 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~  169 (409)
                      +......+.+....+++++|.+.+.......+.....+..+|.+++..+++++|+..|++++.+.|.++..   ...  .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~--~   78 (198)
T 2fbn_A            4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW---DDQ--I   78 (198)
T ss_dssp             ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC---CCH--H
T ss_pred             cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc---chh--h
Confidence            33444556677778888888888888777777778889999999999999999999999999988877620   000  0


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                          .         ....       ..+         ...++.++|.++..+|++++|+.+++++++++|+++.+++.+|
T Consensus        79 ----~---------~~~~-------~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  129 (198)
T 2fbn_A           79 ----L---------LDKK-------KNI---------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG  129 (198)
T ss_dssp             ----H---------HHHH-------HHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             ----H---------HHHH-------HHH---------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence                0         0000       000         2346666777777777777777777777777777777777777


Q ss_pred             HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch
Q 043837          250 EAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR  294 (409)
Q Consensus       250 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  294 (409)
                      .++..+|++++|+.+|+++++++|++..++..+..+...++...+
T Consensus       130 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          130 VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777766666666665554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.68  E-value=2.4e-15  Score=131.82  Aligned_cols=171  Identities=18%  Similarity=0.106  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH---HHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE---LKKA  163 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~  163 (409)
                      +...+..+...+++++|+..++++++..+..+.      .+..+|.++...+++++|+.++++++.+.+....   ...+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344578889999999999999999998877665      2335899999999999999999999986543322   2346


Q ss_pred             HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC---CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD---PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                      +..+|.++...         |++++|+.+|+++++..   |.+......+++++|.+|..+|++++|+.++++++++.+.
T Consensus       158 ~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          158 ENAIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            78888888777         99999999999999632   2233336779999999999999999999999999998765


Q ss_pred             c------HHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhC
Q 043837          241 L------IEALVQRGEAKLLTE-DWEGAVEDLKSAAQQS  272 (409)
Q Consensus       241 ~------~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~  272 (409)
                      .      +.++..+|.++..+| ++++|+.+|++++.+.
T Consensus       229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            4      789999999999999 5799999999999764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.68  E-value=3.4e-16  Score=126.31  Aligned_cols=134  Identities=16%  Similarity=0.246  Sum_probs=96.2

Q ss_pred             HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837          135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL  214 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  214 (409)
                      ...+++++|+..+++++..+|++..   ++..++.++...         |++++|+.+|+++++++|+    +..++..+
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~l   84 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSE---QWALLGEYYLWQ---------NDYSNSLLAYRQALQLRGE----NAELYAAL   84 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHCS----CHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC----CHHHHHHH
Confidence            3445666666666666666666665   666666666555         6666666666666666666    55577788


Q ss_pred             HHH-HHHcCCh--hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          215 CKV-LVKLGRG--KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       215 a~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                      |.+ +...|++  ++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++......+..
T Consensus        85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A           85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            888 7788887  888888888888888888888888888888888888888888888888887655444433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.67  E-value=6.8e-16  Score=138.57  Aligned_cols=228  Identities=14%  Similarity=0.088  Sum_probs=115.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      |+|++|+.+++.+++..++ +.+...++.+|.++|++.++...+..     +....+...+..++..|.|++|+.+|.+ 
T Consensus        75 g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~-  147 (449)
T 1b89_A           75 GNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNN-  147 (449)
T ss_dssp             -----------------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence            3444444444444432222 33334444444444444443333221     1112444555555666666666666654 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      +        ..|..+|.|+.++|++++|++.++++     +++.+|.....++...|+++.|..+... +...|++    
T Consensus       148 a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~----  209 (449)
T 1b89_A          148 V--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE----  209 (449)
T ss_dssp             T--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH----
T ss_pred             h--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh----
Confidence            1        34566666666666666666666666     3456666666666666666666554443 2233322    


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc--CChhHHHHHHHHHHhcCh
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL--GRGKDALSSCTEALNINE  239 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p  239 (409)
                        ...+..+|...         |++++|+.++++++.+++.    ...++..++.+|.+-  ++..+.++.|...+.+.|
T Consensus       210 --l~~lv~~Yek~---------G~~eEai~lLe~aL~le~a----h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          210 --LEELINYYQDR---------GYFEELITMLEAALGLERA----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             --HHHHHHHHHHT---------TCHHHHHHHHHHHTTSTTC----CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             --HHHHHHHHHHC---------CCHHHHHHHHHHHhCCcHH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence              22344444444         8999999999999998887    566888888777654  466777777777777777


Q ss_pred             -----hcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837          240 -----ELIEALVQRGEAKLLTEDWEGAVEDLKSAA  269 (409)
Q Consensus       240 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~al  269 (409)
                           .++..|..+..+|.+.++|+.|+...-...
T Consensus       275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          275 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP  309 (449)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence                 778888899999999999999987654443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.67  E-value=1.2e-14  Score=127.25  Aligned_cols=175  Identities=15%  Similarity=0.079  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---
Q 043837           53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS------KAKLLKVKLLLAAKDYASAISETGYLLKEDENN---  123 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---  123 (409)
                      .........+..++..++|++|+..+.+ ++...|...      ..++.+|.++...|++++|+..+++++...+..   
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWN-ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHH-HhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            3445567788899999999999999998 677666543      446778999999999999999999999876543   


Q ss_pred             ---HHHHHHHHHHHHhcCChHHHHHHHHHHH---ccCCCcHHHH-HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Q 043837          124 ---LEALLHRGRAYYYLADHDVAQRHFQKGL---RLDPEHSELK-KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA  196 (409)
Q Consensus       124 ---~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  196 (409)
                         ..++..+|.+|..+|++++|+.+|++++   ...|++.... .++.+++.++...         |++++|+.+++++
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~---------~~y~~Al~~~~ka  222 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD---------SRYEESLYQVNKA  222 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH---------hhHHHHHHHHHHH
Confidence               5688999999999999999999999999   4556554322 5788888888877         9999999999999


Q ss_pred             HccCCC--CccchHHHHHHHHHHHHHcCChhHH-HHHHHHHHhc
Q 043837          197 LALDPN--HTAHNVHLYLGLCKVLVKLGRGKDA-LSSCTEALNI  237 (409)
Q Consensus       197 l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~  237 (409)
                      +++.++  +......+++++|.++..+|++++| ..++++++.+
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            987543  2222478999999999999999999 7889999875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.8e-15  Score=114.67  Aligned_cols=69  Identities=17%  Similarity=0.218  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..+..+|.+++..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..+++++.++|++..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR   73 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence            334444444444444444444444444444444444444444444444444444444444444444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.66  E-value=1.5e-15  Score=120.66  Aligned_cols=119  Identities=19%  Similarity=0.314  Sum_probs=102.5

Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHcc--------CCCCc------cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALAL--------DPNHT------AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                      ..|..++..|+|++|+..|++++.+        .|.++      .....++.++|.++..+|++++|+.+|+++++++|+
T Consensus        16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~   95 (162)
T 3rkv_A           16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET   95 (162)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence            3344555559999999999999998        22211      116789999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHhhcc
Q 043837          241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-NIREALMRAEKALKMSK  293 (409)
Q Consensus       241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~  293 (409)
                      ++.+++.+|.++..+|++++|+.+|+++++++|+++ .+...+..+...++..+
T Consensus        96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 77888888877766543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.66  E-value=8.4e-15  Score=121.79  Aligned_cols=137  Identities=16%  Similarity=0.187  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      .....+..|..++..|++++|+..|.+ ++  +| ++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~-a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSA-VQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT-SS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHH-Hc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            345568889999999999999999988 43  33 789999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcH-------------HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHS-------------ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD  200 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  200 (409)
                      +..+|++++|+..|++++.+.|.+.             ....++..++.++...         |++++|+..+++++++.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK---------EEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTTC
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcC
Confidence            9999999999999999999888765             1222889999998888         99999999999999999


Q ss_pred             CCC
Q 043837          201 PNH  203 (409)
Q Consensus       201 ~~~  203 (409)
                      |++
T Consensus       152 p~~  154 (213)
T 1hh8_A          152 SEP  154 (213)
T ss_dssp             CSG
T ss_pred             ccc
Confidence            983

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.65  E-value=3.3e-15  Score=113.24  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL-  241 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-  241 (409)
                      ++.++|.++...         |+|++|+.+|+++++++|+    ++.++.++|.+|..+|++++|+..|+++++++|++ 
T Consensus        10 a~~~lG~~~~~~---------~~~~~A~~~y~~Al~~~p~----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A           10 AEKDLGNAAYKQ---------KDFEKAHVHYDKAIELDPS----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            556666666555         9999999999999999999    78899999999999999999999999999998875 


Q ss_pred             ------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837          242 ------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR  284 (409)
Q Consensus       242 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  284 (409)
                            ..++..+|.++..++++++|+++|+++++..|+ +++...+..
T Consensus        77 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           77 ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence                  468899999999999999999999999999886 454444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.65  E-value=2.3e-15  Score=121.43  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=115.8

Q ss_pred             HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhcCCh--H
Q 043837           65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA-YYYLADH--D  141 (409)
Q Consensus        65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~--~  141 (409)
                      +...+++++|+..+.+ ++..+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+ +...|++  +
T Consensus        20 ~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           20 FASQQNPEAQLQALQD-KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CC-----CCCCHHHHH-HHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhccCHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            4567899999999998 8999999999999999999999999999999999999999999999999999 8899999  9


Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837          142 VAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT  204 (409)
Q Consensus       142 ~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  204 (409)
                      +|+..+++++..+|++..   ++..++.++...         |++++|+..++++++++|+++
T Consensus        99 ~A~~~~~~al~~~p~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEIT---ALMLLASDAFMQ---------ANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHhCCCcHH---HHHHHHHHHHHc---------ccHHHHHHHHHHHHhhCCCCc
Confidence            999999999999999988   899999998888         999999999999999999854

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=6e-15  Score=140.22  Aligned_cols=173  Identities=14%  Similarity=0.019  Sum_probs=159.9

Q ss_pred             HccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837          102 AAKD-YASAISETGYLLKEDENNLEALLHRGRAYYYLAD----------HDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus       102 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      ..++ .++|+..+.+++.++|++..+|+.++.++..+++          +++++..+.+++..+|++..   +|...+.+
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---aW~hR~w~  116 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TWHHRCWL  116 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHH
Confidence            3444 4688999999999999999999999999999998          99999999999999999999   99999999


Q ss_pred             HHHHHHHhhHHhcC--CHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcChhcHHHHHH
Q 043837          171 LKKTKSAEDNVSKG--KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG-RGKDALSSCTEALNINEELIEALVQ  247 (409)
Q Consensus       171 ~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~  247 (409)
                      +..+         +  ++++++..++++++++|.    +..+|..++.++...+ .+++++++++++++.+|.+..+|..
T Consensus       117 l~~l---------~~~~~~~el~~~~k~l~~d~~----N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~  183 (567)
T 1dce_A          117 LSRL---------PEPNWARELELCARFLEADER----NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  183 (567)
T ss_dssp             HHTC---------SSCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred             HHHc---------ccccHHHHHHHHHHHHhhccc----cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence            8877         8  779999999999999999    8889999999999999 8999999999999999999999999


Q ss_pred             HHHHHHhc--------------cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          248 RGEAKLLT--------------EDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       248 la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      ++.++..+              +.+++|++++.+++.++|++..++..+..+.....
T Consensus       184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence            99998885              67899999999999999999999998888775533

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.65  E-value=6.4e-15  Score=117.12  Aligned_cols=129  Identities=17%  Similarity=0.213  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc
Q 043837          127 LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH  206 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  206 (409)
                      +..+|.++...|++++|+..|++++..+|++..   ++..++.++...         +++++|+..++++++++|+    
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~a~~~~~~----   79 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---YYGNRSLAYLRT---------ECYGYALGDATRAIELDKK----   79 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcc----
Confidence            344444444444444444444444444444433   444444444333         4444444444444444444    


Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH--HHHhccCHHHHHHHHHHHHhh
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE--AKLLTEDWEGAVEDLKSAAQQ  271 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~~~~~~A~~~~~~al~~  271 (409)
                      +..++..+|.++...|++++|+.+++++++++|.+..++..++.  .+...|++++|+..+.++..+
T Consensus        80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            34456666666666666666666666666666666655533333  356666677777666655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.65  E-value=1.2e-15  Score=125.42  Aligned_cols=149  Identities=21%  Similarity=0.222  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH----------
Q 043837           22 SEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS----------   90 (409)
Q Consensus        22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~----------   90 (409)
                      +......+.+...+++++.|...+..... ....+..+...|..++..++|++|+..|.+ ++...|.++          
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~   82 (198)
T 2fbn_A            4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKE-ALDFFIHTEEWDDQILLDK   82 (198)
T ss_dssp             ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTTTCTTCCCHHHHHH
T ss_pred             cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHhcccccchhhHHHH
Confidence            34444556677778888888666655444 344567788899999999999999999999 888888876          


Q ss_pred             ------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837           91 ------KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY  164 (409)
Q Consensus        91 ------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  164 (409)
                            .++..+|.++..+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+.+|++++.++|++..   ++
T Consensus        83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~  159 (198)
T 2fbn_A           83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD---IR  159 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---HH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---HH
Confidence                  899999999999999999999999999999999999999999999999999999999999999999998   88


Q ss_pred             HHHHHHHHHH
Q 043837          165 FALKNLLKKT  174 (409)
Q Consensus       165 ~~l~~~~~~~  174 (409)
                      ..++.++..+
T Consensus       160 ~~l~~~~~~~  169 (198)
T 2fbn_A          160 NSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888777

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=2.3e-15  Score=119.83  Aligned_cols=112  Identities=15%  Similarity=0.184  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI  242 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  242 (409)
                      .+..++.++...         +++++|+.+|+++++++|+    +..++.++|.++..+|++++|+.+|+++++++|+++
T Consensus        13 ~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   79 (164)
T 3sz7_A           13 KLKSEGNAAMAR---------KEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS   79 (164)
T ss_dssp             HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCc----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            777787777776         9999999999999999999    788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHH
Q 043837          243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN--IREALMRAEK  287 (409)
Q Consensus       243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~  287 (409)
                      .+++.+|.++..+|++++|+.+|+++++++|++..  +...+..+..
T Consensus        80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  126 (164)
T 3sz7_A           80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR  126 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987  4444444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.65  E-value=1.4e-14  Score=126.96  Aligned_cols=172  Identities=15%  Similarity=0.058  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK------AKLLKVKLLLAAKDYASAISETGYLLKEDENN------  123 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  123 (409)
                      ......+..++..+++++|+..+.+ ++...+..+.      .+..++.++...+++++|+..+++++.+.+..      
T Consensus        76 ~~l~~~i~~~~~~~~y~~a~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  154 (293)
T 3u3w_A           76 KQFKDQVIMLCKQKRYKEIYNKVWN-ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHH-HhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence            3344567888999999999999999 7776665544      34458899999999999999999999965442      


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837          124 LEALLHRGRAYYYLADHDVAQRHFQKGLRL----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL  199 (409)
Q Consensus       124 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  199 (409)
                      ..++..+|.+|..+|++++|+.+|++++..    ..+......++.+++.++..+         |++++|+.++++++++
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~---------~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD---------SRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHH
Confidence            337899999999999999999999999952    133444555888999998888         9999999999999997


Q ss_pred             CCCC--ccchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhc
Q 043837          200 DPNH--TAHNVHLYLGLCKVLVKLGR-GKDALSSCTEALNI  237 (409)
Q Consensus       200 ~~~~--~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~  237 (409)
                      .+..  ....+.++.++|.++..+|+ +++|+.+|++++.+
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            6542  12247899999999999995 69999999999976

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.64  E-value=1.6e-16  Score=147.86  Aligned_cols=148  Identities=17%  Similarity=0.089  Sum_probs=96.0

Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH------------HHHHHHHHHH
Q 043837          102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE------------LKKAYFALKN  169 (409)
Q Consensus       102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~~~~l~~  169 (409)
                      .++++++|+..++.++...|.....+..+|.+++..+++++|+..|++++.++|.+..            ...++.+++.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            4556778888888888888888888888899999999999999999999888887631            0114445555


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG  249 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  249 (409)
                      ++..+         +++++|+.+|+++++++|+    +..+++++|.+|..++++++|+.+|+++++++|++..++..++
T Consensus       326 ~~~~~---------g~~~~A~~~~~~al~~~p~----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  392 (457)
T 1kt0_A          326 CYLKL---------REYTKAVECCDKALGLDSA----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS  392 (457)
T ss_dssp             HHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred             HHHHh---------cCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            54444         6666666666666666555    4555566666666666666666666666666665555666666


Q ss_pred             HHHHhccCHHHHH
Q 043837          250 EAKLLTEDWEGAV  262 (409)
Q Consensus       250 ~~~~~~~~~~~A~  262 (409)
                      .++..++++++|.
T Consensus       393 ~~~~~~~~~~~a~  405 (457)
T 1kt0_A          393 MCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6665555555544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.64  E-value=8.8e-15  Score=116.33  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN  169 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~  169 (409)
                      +..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|++..   ++..++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~a~   89 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHH
Confidence            3445555666666666666666666666666666666666666666666666666666666666665555   5555555


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH--HHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY--LGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      ++...         |++++|+.++++++++.|++    ..++  ..++..+...|++++|+..+.++..
T Consensus        90 ~~~~~---------~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           90 SNMAL---------GKFRAALRDYETVVKVKPHD----KDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHT---------TCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh---------ccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            55555         66666666666666666552    2233  3333335556666666666655543

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.64  E-value=8.5e-17  Score=115.52  Aligned_cols=68  Identities=57%  Similarity=0.933  Sum_probs=61.9

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      .++|++|+|.+.++.++|+++|+++++++|||++... ..++++|+.|++||++|+||.+|..||....
T Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (103)
T 1bq0_A            3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (103)
T ss_dssp             CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence            5789999999999999999999999999999998753 3577899999999999999999999998554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.63  E-value=1.9e-15  Score=116.26  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC-------cHH-----HHHHHHHHHHHccCHHHHHHHHHHH
Q 043837           49 LSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA-------CSK-----AKLLKVKLLLAAKDYASAISETGYL  116 (409)
Q Consensus        49 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a  116 (409)
                      +.....+..++..+..++..|+|++|+..|++ ++..+|.       +..     +|.++|.++..+|++++|+.+|+++
T Consensus         5 ~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~k-AL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A            5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRR-AMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33455677788999999999999999999999 8999998       443     9999999999999999999999999


Q ss_pred             Hhh-------CCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          117 LKE-------DENNLEAL----LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       117 l~~-------~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      |++       +|++..+|    +++|.++..+|++++|+..|+++++++|++..
T Consensus        84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            999       99999999    99999999999999999999999999998876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.63  E-value=7.2e-15  Score=112.10  Aligned_cols=72  Identities=15%  Similarity=0.213  Sum_probs=34.8

Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..+..++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...+++++|+.++++++..+|++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            344444444555555555555555555555444444444444444444444444444444444444444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.63  E-value=5.1e-15  Score=117.79  Aligned_cols=71  Identities=24%  Similarity=0.180  Sum_probs=38.0

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      .+..++.+|.+++..|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+.+|++++.++|++..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   80 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK   80 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.63  E-value=8.7e-15  Score=111.63  Aligned_cols=122  Identities=15%  Similarity=0.242  Sum_probs=103.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837          120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL  199 (409)
Q Consensus       120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  199 (409)
                      .|..+.+++.+|.++...+++++|+..|++++..+|++..   ++..++.++...         +++++|+.++++++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---LYSNRAACYTKL---------LEFQLALKDCEECIQL   79 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH---HHHHHHHHHTTT---------TCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHh---------ccHHHHHHHHHHHHHh
Confidence            4566778888888888888888888888888888888877   888888888776         8888888888888888


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccC
Q 043837          200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTED  257 (409)
Q Consensus       200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  257 (409)
                      .|+    ...++..+|.++...|++++|+.++++++..+|.+..++..++.++..+|+
T Consensus        80 ~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 EPT----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             CCC----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            888    667888888888888888888888888888888888888888888887664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.62  E-value=7.9e-15  Score=111.36  Aligned_cols=123  Identities=23%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837           86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF  165 (409)
Q Consensus        86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  165 (409)
                      +|..+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...+++++|+..+++++..+|++..   ++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~   84 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK---AYG   84 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH---HHH
Confidence            34456666777777777777777777777777777777777777777777777777777777777776666655   555


Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG  224 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~  224 (409)
                      .++.++...         +++++|+.++++++++.|+    +..++..++.++..+|++
T Consensus        85 ~~~~~~~~~---------~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           85 RMGLALSSL---------NKHVEAVAYYKKALELDPD----NETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHh---------CCHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHhcC
Confidence            555555555         6666666666666666665    444556666666655554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.62  E-value=4.3e-15  Score=112.59  Aligned_cols=106  Identities=17%  Similarity=0.166  Sum_probs=84.0

Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH----HHHH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE----LKKA  163 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~  163 (409)
                      +.+.++..+|.+++..|+|++|+..|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|++..    ...+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999998876543    2223


Q ss_pred             HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      +..+|.++..+         +++++|+.+|++++...|+
T Consensus        86 ~~~lg~~~~~~---------~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           86 MSRAGNAFQKQ---------NDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHT---------TCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHhhCcC
Confidence            44444444444         6666666666666665554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.62  E-value=7.9e-16  Score=143.28  Aligned_cols=145  Identities=17%  Similarity=0.151  Sum_probs=118.1

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHH
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---------------LEALLHRGRA  133 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~  133 (409)
                      +++++|+..+.. ++...|..+..+..+|.+++..|+|++|+..|+++++++|.+               ..+|+++|.+
T Consensus       248 ~~~~~A~~~~~~-~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          248 KSFEKAKESWEM-DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEECCCCGGGS-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhc-CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            456666666665 666677788888888888888888888888888888888887               6788889999


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                      |..++++++|+.+|++++.++|++..   ++++++.++..+         +++++|+..|+++++++|+    +..++.+
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~~g~a~~~~---------g~~~~A~~~~~~al~l~P~----~~~a~~~  390 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEK---GLYRRGEAQLLM---------NEFESAKGDFEKVLEVNPQ----NKAARLQ  390 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHTTC--------CHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC----CHHHHHH
Confidence            99999999999999999999988887   888888888877         8999999999999999888    5668888


Q ss_pred             HHHHHHHcCChhHHHHH
Q 043837          214 LCKVLVKLGRGKDALSS  230 (409)
Q Consensus       214 la~~~~~~~~~~~A~~~  230 (409)
                      ++.++..++++++|...
T Consensus       391 l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          391 ISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888888777643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.62  E-value=1.3e-14  Score=111.45  Aligned_cols=122  Identities=20%  Similarity=0.251  Sum_probs=109.4

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837          153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT  232 (409)
Q Consensus       153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  232 (409)
                      .+|.+..   .+..++.++...         |++++|+..|++++.++|+    +..++.++|.++..+|++++|+..++
T Consensus         4 ~~~~~~~---~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~   67 (137)
T 3q49_B            4 MKSPSAQ---ELKEQGNRLFVG---------RKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCR   67 (137)
T ss_dssp             --CCCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccccHH---HHHHHHHHHHHh---------CcHHHHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3455666   788888888777         9999999999999999999    77899999999999999999999999


Q ss_pred             HHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHHh
Q 043837          233 EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ-----DMNIREALMRAEKALK  290 (409)
Q Consensus       233 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~  290 (409)
                      ++++++|+++.+++.+|.++..+|++++|+..|+++++++|+     +..+...+..+.....
T Consensus        68 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           68 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998     7778877777765543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.61  E-value=6.7e-15  Score=111.76  Aligned_cols=123  Identities=20%  Similarity=0.260  Sum_probs=82.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837          120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL  199 (409)
Q Consensus       120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  199 (409)
                      +|.++..+..+|.++...+++++|+..+++++..+|++..   ++..++.++...         +++++|+.++.+++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---YFCNRAAAYSKL---------GNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHh---------hchHHHHHHHHHHHhc
Confidence            3444556667777777777777777777777777766665   666666666555         6677777777777666


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837          200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW  258 (409)
Q Consensus       200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  258 (409)
                      .|+    ...++..+|.++...|++++|+.+++++++++|++..++..++.++..+|++
T Consensus        76 ~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 DPA----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             Ccc----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            666    4556666666666667777777777766666666666666666666666553

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.60  E-value=9.3e-16  Score=107.48  Aligned_cols=66  Identities=44%  Similarity=0.774  Sum_probs=60.1

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ...++|++|+|.+.++.++|+++|+++++.+|||++...    .+.|+.|++||++|+||.+|..||...
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~   71 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKREIYDQYG   71 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence            457899999999999999999999999999999998664    348999999999999999999999854

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.60  E-value=9.9e-15  Score=109.52  Aligned_cols=101  Identities=10%  Similarity=-0.011  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      .+..|..++..|++++|+..|++ ++..+|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEA-VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46788888899999999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHccCCCcHH
Q 043837          138 ADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      |++++|+..++++++++|++..
T Consensus        99 g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999998653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.60  E-value=2.4e-14  Score=113.59  Aligned_cols=116  Identities=17%  Similarity=0.160  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhh------------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVF------------------SPACSKAKLLKVKLLLAAKDYASAISETGYL  116 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  116 (409)
                      +..+...|..++..|+|++|+..|.+ ++..                  +|....++.++|.|+..+|++++|+..++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRD-ALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34445556666666666666666665 4544                  6777899999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHHHHH
Q 043837          117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS-ELKKAYFALKNLLKKT  174 (409)
Q Consensus       117 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~l~~~~~~~  174 (409)
                      ++++|+++.+++.+|.++..+|++++|+..|++++.++|++. .   +...+..+...+
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~~l~~~~~~~  145 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV---VAREMKIVTERR  145 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 4   455555554443

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.8e-15  Score=106.32  Aligned_cols=68  Identities=57%  Similarity=0.996  Sum_probs=64.2

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ..++|++|+|.+.++.++|+++|+++++.+|||+.......++++|+.|++||++|+||.+|..||..
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~   75 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRA   75 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            46899999999999999999999999999999998877778999999999999999999999999984

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.1e-15  Score=107.22  Aligned_cols=71  Identities=41%  Similarity=0.688  Sum_probs=63.8

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCc
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDI  364 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~  364 (409)
                      ...++|++|+|.+.++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||.....
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC-SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            346899999999999999999999999999999998654 36788999999999999999999999986543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.59  E-value=2.7e-14  Score=117.60  Aligned_cols=165  Identities=18%  Similarity=0.169  Sum_probs=116.3

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHH
Q 043837          101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSA  177 (409)
Q Consensus       101 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~  177 (409)
                      +..|++++|...++.+....+....++..+|.++...|++++|+.++++++.+..   +......++..++.++...   
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---   79 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA---   79 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---
Confidence            4456777777644444332224566777777777777777777777777776321   2233334666677766666   


Q ss_pred             hhHHhcCCHHHHHHHHHHHHcc---CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh------cHHHHHHH
Q 043837          178 EDNVSKGKLRVAVEDFKAALAL---DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE------LIEALVQR  248 (409)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l  248 (409)
                            |++++|+.++.+++.+   .++++.....++.++|.++...|++++|+.++++++.+.+.      ...++..+
T Consensus        80 ------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  153 (203)
T 3gw4_A           80 ------GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL  153 (203)
T ss_dssp             ------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence                  8888888888888776   33322225678999999999999999999999999976432      24557899


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          249 GEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       249 a~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      |.++...|++++|+.++++++++...
T Consensus       154 a~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          154 GDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.59  E-value=6e-14  Score=115.47  Aligned_cols=165  Identities=15%  Similarity=0.171  Sum_probs=131.4

Q ss_pred             HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhcC
Q 043837           65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE------DENNLEALLHRGRAYYYLA  138 (409)
Q Consensus        65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~  138 (409)
                      ++..|++++|...+.. +....+....++..+|.++...|++++|+..+++++.+      .|....++..+|.++...|
T Consensus         2 ~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQA-LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHH-HHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            3567888888885543 33333367899999999999999999999999999983      4445678899999999999


Q ss_pred             ChHHHHHHHHHHHcc---CCCcH-HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHHHH
Q 043837          139 DHDVAQRHFQKGLRL---DPEHS-ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHLYL  212 (409)
Q Consensus       139 ~~~~A~~~~~~al~~---~p~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~  212 (409)
                      ++++|+.++++++.+   .+++. ....++..++.++...         |++++|+.++++++.+.+.  ++.....++.
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  151 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF---------GDLAGARQEYEKSLVYAQQADDQVAIACAFR  151 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            999999999999987   55333 4445788888888888         9999999999999986432  2222456778


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          213 GLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       213 ~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                      ++|.++...|++++|+.++++++++..
T Consensus       152 ~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          152 GLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998744

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.59  E-value=1.3e-14  Score=108.84  Aligned_cols=101  Identities=14%  Similarity=0.063  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837          164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE  243 (409)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  243 (409)
                      ++.++.++...         |++++|+..|+++++.+|+    +..+|+.+|.++...|++++|+..|+++++++|+++.
T Consensus        20 ~~~~g~~~~~~---------g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~   86 (121)
T 1hxi_A           20 PMEEGLSMLKL---------ANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA   86 (121)
T ss_dssp             HHHHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            44555555555         9999999999999999999    7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      ++..+|.++...|++++|+..|+++++++|++..
T Consensus        87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999998754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.59  E-value=3e-14  Score=109.42  Aligned_cols=104  Identities=15%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837           86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF  165 (409)
Q Consensus        86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  165 (409)
                      +|.++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..++++++|+..+++++.++|++..   ++.
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~   81 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHF   81 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH---HHH
Confidence            34555555666666666666666666666666666665555556666665555555555555555555555544   444


Q ss_pred             HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837          166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP  201 (409)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  201 (409)
                      .++.++...         |++++|+..|++++++.|
T Consensus        82 ~l~~~~~~~---------~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           82 FLGQCQLEM---------ESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHHHT---------TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---------hhHHHHHHHHHHHHHHCh
Confidence            444444444         444444444444444444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.57  E-value=1e-13  Score=104.17  Aligned_cols=70  Identities=36%  Similarity=0.396  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~   78 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE   78 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence            4445555555555555555555555555555555555555555555555555555555555444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.57  E-value=1.4e-13  Score=103.46  Aligned_cols=121  Identities=36%  Similarity=0.489  Sum_probs=85.1

Q ss_pred             CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          120 DENN-LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       120 ~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      +|.. ..+++.+|.++...+++++|+..+++++..+|++..   ++..++.++...         +++++|+..+++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~~~~   71 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQ---------GDYDEAIEYYQKALE   71 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHH
Confidence            3444 556777777777777777777777777777777666   667777776666         777777777777777


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837          199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE  256 (409)
Q Consensus       199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  256 (409)
                      ..|.    ...++..+|.++...|++++|+..+++++..+|+++.++..++.++...|
T Consensus        72 ~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           72 LDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             hCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            7776    45567777777777777777777777777777777777777777766543

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=7.3e-15  Score=100.92  Aligned_cols=69  Identities=55%  Similarity=0.932  Sum_probs=64.8

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..++|++|+|.+.++.++|+++|+++++.+|||+.......++++|+.|++||++|+||.+|..||...
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   76 (82)
T 2ej7_A            8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG   76 (82)
T ss_dssp             SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            468999999999999999999999999999999998877789999999999999999999999999853

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=2.7e-13  Score=100.71  Aligned_cols=113  Identities=13%  Similarity=0.181  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      ...++..|..++..|++++|+..+.+ ++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSE-AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45567788888889999999999998 88999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837          135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      ...|++++|+..+++++..+|++..   ++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQ---LKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHH---HHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHH---HHHHHHHhh
Confidence            9999999999999999999999988   676666553

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=8.3e-15  Score=101.77  Aligned_cols=67  Identities=52%  Similarity=0.847  Sum_probs=62.3

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..++|++|+|.+.++.++|+++|+++++.+|||++..  ..++++|+.|++||++|+||.+|..||...
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   72 (88)
T 2ctr_A            6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRKEYDTLG   72 (88)
T ss_dssp             CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence            4689999999999999999999999999999999874  578899999999999999999999999853

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=3e-15  Score=105.86  Aligned_cols=67  Identities=58%  Similarity=0.955  Sum_probs=63.5

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      .++|++|+|.+.++.++|+++|+++++.+|||++......+++.|+.|++||++|+||.+|..||..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~   68 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRY   68 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            4789999999999999999999999999999998887778999999999999999999999999984

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.54  E-value=2.6e-13  Score=100.77  Aligned_cols=71  Identities=13%  Similarity=0.218  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837          210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRE  280 (409)
Q Consensus       210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  280 (409)
                      ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++.
T Consensus        40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  110 (118)
T 1elw_A           40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE  110 (118)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444433333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.5e-13  Score=105.54  Aligned_cols=121  Identities=22%  Similarity=0.199  Sum_probs=106.7

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837          153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT  232 (409)
Q Consensus       153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  232 (409)
                      .+|.+..   .+..++..+...         +++++|+..|+++++..|+++. ...++.++|.++...+++++|+..++
T Consensus        23 ~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~   89 (148)
T 2dba_A           23 PGASSVE---QLRKEGNELFKC---------GDYGGALAAYTQALGLDATPQD-QAVLHRNRAACHLKLEDYDKAETEAS   89 (148)
T ss_dssp             TTCCCHH---HHHHHHHHHHTT---------TCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHHcccchH-HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            3455555   677777777666         9999999999999999998321 27899999999999999999999999


Q ss_pred             HHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          233 EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       233 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      +++.++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..+..+.
T Consensus        90 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887776653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.6e-13  Score=105.43  Aligned_cols=122  Identities=16%  Similarity=0.099  Sum_probs=80.0

Q ss_pred             hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      .+|.+...++.+|.++...|++++|+..|++++..+|++.....++..++.++...         +++++|+..++++++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~   93 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL---------EDYDKAETEASKAIE   93 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH---------ccHHHHHHHHHHHHh
Confidence            34555666666666666666666666666666666666532223666666666555         677777777777777


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837          199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL  253 (409)
Q Consensus       199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  253 (409)
                      +.|+    +..+++.+|.++...|++++|+.+++++++++|++..++..++.+..
T Consensus        94 ~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           94 KDGG----DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HTSC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             hCcc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            6666    45567777777777777777777777777777777766666666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.54  E-value=5.8e-13  Score=114.60  Aligned_cols=267  Identities=15%  Similarity=0.087  Sum_probs=181.1

Q ss_pred             HHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHH
Q 043837           30 SVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASA  109 (409)
Q Consensus        30 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  109 (409)
                      +-.+-+|+|..++....+. .........+-+...++..|++....        . .+....+...++..+.  ++   |
T Consensus        21 kn~fy~G~yq~~i~e~~~~-~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~-~~~~~~a~~~la~~~~--~~---a   85 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKF-SKVTDNTLLFYKAKTLLALGQYQSQD--------P-TSKLGKVLDLYVQFLD--TK---N   85 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTS-SCCCCHHHHHHHHHHHHHTTCCCCCC--------S-SSTTHHHHHHHHHHHT--TT---C
T ss_pred             HHHHHhhHHHHHHHHHHhc-CccchHHHHHHHHHHHHHcCCCccCC--------C-CCHHHHHHHHHHHHhc--cc---H
Confidence            3456688988887744321 11111234455667777777776421        1 1222334444554442  22   8


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH
Q 043837          110 ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP--EHSELKKAYFALKNLLKKTKSAEDNVSKGKLR  187 (409)
Q Consensus       110 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  187 (409)
                      +..+++.+...+....+++.+|.++...|++++|++++.+++..+|  .+.+   ++..+..++..+         |+.+
T Consensus        86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le---a~~l~vqi~L~~---------~r~d  153 (310)
T 3mv2_B           86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE---LLLLAIEVALLN---------NNVS  153 (310)
T ss_dssp             CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH---HHHHHHHHHHHT---------TCHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH---HHHHHHHHHHHC---------CCHH
Confidence            8999999988766777888999999999999999999999999987  6666   777778888777         9999


Q ss_pred             HHHHHHHHHHccCCCC--ccchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcChh--cHHHHHHHHHHHHhccCHHHH
Q 043837          188 VAVEDFKAALALDPNH--TAHNVHLYLGLCKVLVKLG--RGKDALSSCTEALNINEE--LIEALVQRGEAKLLTEDWEGA  261 (409)
Q Consensus       188 ~A~~~~~~al~~~~~~--~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A  261 (409)
                      .|.+.++++.+.+|+.  ......+...-+++.+..|  ++.+|...|+++....|+  .+..+++   ++..+|++++|
T Consensus       154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA  230 (310)
T 3mv2_B          154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA  230 (310)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred             HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence            9999999999999820  0003333444455566667  999999999999988886  3334444   89999999999


Q ss_pred             HHHHHHHHhh----------CCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC-CC
Q 043837          262 VEDLKSAAQQ----------SPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-VD  330 (409)
Q Consensus       262 ~~~~~~al~~----------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~-~~  330 (409)
                      ...++.+++.          +|+++++...+..+...+++                   +. ..|...++..||+.. ..
T Consensus       231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-------------------~a-~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-------------------DT-EDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-------------------TT-HHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-------------------HH-HHHHHHHHHhCCCChHHH
Confidence            9999988877          47788877555555444432                   11 233334556677752 22


Q ss_pred             chHHHHHHHHHHHHHH
Q 043837          331 NREEAENKFREIAAAY  346 (409)
Q Consensus       331 ~~~~a~~~~~~i~~ay  346 (409)
                      ...+.+..|.++...|
T Consensus       291 d~~~k~~~Fd~~~~ky  306 (310)
T 3mv2_B          291 HHQEIDAKFDELVRKY  306 (310)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            3355566676666544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.54  E-value=2.3e-14  Score=127.91  Aligned_cols=139  Identities=20%  Similarity=0.268  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHccCHHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS-----------------KAKLLKVKLLLAAKDYASAISETGYL  116 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~a  116 (409)
                      .+..++..+..++..++|++|+..|.+ ++...|.+.                 .+++++|.|+..++++++|+.+|+++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~-Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEM-AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHH-HHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455566777777777788888888777 677777665                 48999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Q 043837          117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA  196 (409)
Q Consensus       117 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  196 (409)
                      ++++|++..+++.+|.+|..+|++++|+.+|++++.++|++..   ++..++.+....        .+..+++...|.++
T Consensus       257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~---a~~~L~~l~~~~--------~~~~~~a~~~~~~~  325 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA---IRRELRALAEQE--------KALYQKQKEMYKGI  325 (338)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988   777777664322        16778889999999


Q ss_pred             HccCCCCc
Q 043837          197 LALDPNHT  204 (409)
Q Consensus       197 l~~~~~~~  204 (409)
                      +...|+++
T Consensus       326 l~~~p~~~  333 (338)
T 2if4_A          326 FKGKDEGG  333 (338)
T ss_dssp             --------
T ss_pred             hCCCCCCC
Confidence            99998754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.54  E-value=3.1e-13  Score=102.52  Aligned_cols=111  Identities=17%  Similarity=0.186  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS---KAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHR  130 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  130 (409)
                      ..+..|..++..|++++|+..|.+ ++...|.++   .+++.+|.++...|++++|+..|+++++.+|++   +.+++.+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLS-FLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHH-HHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            356788888999999999999998 888899888   899999999999999999999999999999999   8899999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837          131 GRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK  168 (409)
Q Consensus       131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~  168 (409)
                      |.++..+|++++|+..|++++...|++.....+...+.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            99999999999999999999999999987444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.54  E-value=4.3e-14  Score=108.47  Aligned_cols=100  Identities=19%  Similarity=0.183  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG----------KDALSSCTEALNINEELIEALVQRGEAKL  253 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~  253 (409)
                      +.+++|+..++++++++|+    ++.+|.++|.++..++++          ++|+..|+++|+++|++..+|+++|.+|.
T Consensus        16 ~~feeA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            7899999999999999999    788999999999999876          49999999999999999999999999999


Q ss_pred             hcc-----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          254 LTE-----------DWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       254 ~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      .+|           ++++|+.+|++|++++|++...+..+..+.+
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            885           8999999999999999999888777766544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.53  E-value=3.2e-15  Score=133.56  Aligned_cols=133  Identities=20%  Similarity=0.265  Sum_probs=69.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC
Q 043837          121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD  200 (409)
Q Consensus       121 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  200 (409)
                      +.....+..+|.+++..+++++|+..|++++.+.|++..    +.       .         .+++.++...+       
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~----~~-------~---------~~~~~~~~~~l-------  228 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM----FQ-------L---------YGKYQDMALAV-------  228 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH----HT-------C---------CHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh----hh-------h---------cccHHHHHHHH-------
Confidence            334556777777777777777777777777777766441    00       0         02222222221       


Q ss_pred             CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837          201 PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRE  280 (409)
Q Consensus       201 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  280 (409)
                            ...+++++|.++..++++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++.
T Consensus       229 ------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~  302 (338)
T 2if4_A          229 ------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR  302 (338)
T ss_dssp             ------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence                  11255566666666666666666666666666666666666666666666666666666666666666666555


Q ss_pred             HHHHHH
Q 043837          281 ALMRAE  286 (409)
Q Consensus       281 ~l~~~~  286 (409)
                      .+..+.
T Consensus       303 ~L~~l~  308 (338)
T 2if4_A          303 ELRALA  308 (338)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            555543

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2.5e-14  Score=97.11  Aligned_cols=68  Identities=46%  Similarity=0.788  Sum_probs=62.6

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ..++|++|+|.+.++.++|+++|+++++.+|||+...  ..+++.|+.|++||++|+||.+|..||....
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            4689999999999999999999999999999999875  4678899999999999999999999998543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.53  E-value=1.9e-14  Score=134.44  Aligned_cols=135  Identities=11%  Similarity=0.239  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY  135 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  135 (409)
                      ..++.+|..++..|++++|+..|++ +++.+|.++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.+|.
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~-Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQ-AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3345566677888999999999999 899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH--HHHHHHHhhHHhcCCHHHHHHHHH-----------HHHccCCC
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL--LKKTKSAEDNVSKGKLRVAVEDFK-----------AALALDPN  202 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~A~~~~~-----------~al~~~~~  202 (409)
                      .+|++++|+..|+++++++|++..   ++..++.+  +...         +++++|+..++           +++.+.|+
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKD---AKMKYQECNKIVKQ---------KAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTT---HHHHHHHHHHHHHH---------HHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHH---------HHHHHHhccccccchhHhhhhhhhcccccc
Confidence            999999999999999999999988   77777776  4444         99999999999           88887775


Q ss_pred             C
Q 043837          203 H  203 (409)
Q Consensus       203 ~  203 (409)
                      .
T Consensus       154 ~  154 (477)
T 1wao_1          154 Y  154 (477)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.53  E-value=4e-13  Score=101.84  Aligned_cols=107  Identities=19%  Similarity=0.098  Sum_probs=96.2

Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc---HHHHHHHHHHHHhcc
Q 043837          180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL---IEALVQRGEAKLLTE  256 (409)
Q Consensus       180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~  256 (409)
                      ++..|++++|+..|+++++..|+++. ...+++.+|.++...|++++|+..|++++..+|++   +.+++.+|.++..+|
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g   90 (129)
T 2xev_A           12 ALKNGKYDDASQLFLSFLELYPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG   90 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence            33449999999999999999998543 44799999999999999999999999999999999   899999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          257 DWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       257 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      ++++|+..|+++++..|+++.+......+..
T Consensus        91 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           91 KNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            9999999999999999999887776665544

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.52  E-value=2.1e-14  Score=97.20  Aligned_cols=67  Identities=54%  Similarity=0.872  Sum_probs=61.1

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      .++|++|+|.+.++.++|+++|+++++.+|||+...  ..++..|+.|++||++|+||.+|..||...+
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   69 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC--TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            478999999999999999999999999999999875  3577899999999999999999999998543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.52  E-value=8.2e-13  Score=122.26  Aligned_cols=206  Identities=13%  Similarity=-0.019  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS-----------------KAKLLKVKLLLAAKDYASAISETGYLLKE  119 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~  119 (409)
                      ..+..|..+...|+|++|++.|.+ ++...|...                 .++..+|.+|...|++++|++.+.+++..
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLS-LLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHH-HHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-HHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            356778888889999999999988 777666532                 46889999999999999999999999987


Q ss_pred             CCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHH
Q 043837          120 DENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAV  190 (409)
Q Consensus       120 ~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~  190 (409)
                      .+....      +...++.++...+++++|+.++++++...+   +......++..++.++...         |+|.+|+
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~  155 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK---------KQYKDSL  155 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH---------TCHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc---------cChHHHH
Confidence            655322      456788899999999999999999987532   2222334788888888888         9999999


Q ss_pred             HHHHHHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh-------cHHHHHHHHHHHHhccCHHHH
Q 043837          191 EDFKAALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE-------LIEALVQRGEAKLLTEDWEGA  261 (409)
Q Consensus       191 ~~~~~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A  261 (409)
                      .++.+++....  ++......++..++.+|...+++++|...+++++...+.       ....+..+|.++...+++++|
T Consensus       156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA  235 (434)
T ss_dssp             HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999987532  222337789999999999999999999999999876432       245677889999999999999


Q ss_pred             HHHHHHHHhhC
Q 043837          262 VEDLKSAAQQS  272 (409)
Q Consensus       262 ~~~~~~al~~~  272 (409)
                      ..+|.++++..
T Consensus       236 ~~~~~~a~~~~  246 (434)
T 4b4t_Q          236 FSYFFESFESY  246 (434)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.52  E-value=3.3e-13  Score=102.29  Aligned_cols=116  Identities=20%  Similarity=0.255  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL-  241 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-  241 (409)
                      .+..++.++...         +++++|+.++++++...|.    +..++.++|.++...|++++|+.++++++...|++ 
T Consensus         6 ~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (131)
T 1elr_A            6 KEKELGNDAYKK---------KDFDTALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (131)
T ss_dssp             HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence            666777776666         9999999999999999998    67799999999999999999999999999999887 


Q ss_pred             ------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837          242 ------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS  292 (409)
Q Consensus       242 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  292 (409)
                            +.++..+|.++...|++++|+.+|++++++.| ++.+...+..+...++..
T Consensus        73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence                  99999999999999999999999999999999 588888888887766543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.52  E-value=3.1e-15  Score=139.81  Aligned_cols=136  Identities=19%  Similarity=0.238  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN  169 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~  169 (409)
                      +..+..+|.++...|++++|+..|+++++++|++..++..+|.++..+|++++|+..++++++++|++..   ++..++.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~   82 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAA   82 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Confidence            4456677889999999999999999999999999999999999999999999999999999999999998   9999999


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHH--HHHcCChhHHHHHHH-----------HHHh
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKV--LVKLGRGKDALSSCT-----------EALN  236 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~al~  236 (409)
                      ++..+         |++++|+..|+++++++|+    ...++.+++.+  +...+++++|++.++           +++.
T Consensus        83 ~~~~~---------g~~~eA~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~  149 (477)
T 1wao_1           83 SNMAL---------GKFRAALRDYETVVKVKPH----DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT  149 (477)
T ss_dssp             HHHHH---------TCHHHHHHHHHHHHHHSTT----CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCC
T ss_pred             HHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcc
Confidence            99988         9999999999999999999    45577888887  889999999999999           7877


Q ss_pred             cChhc
Q 043837          237 INEEL  241 (409)
Q Consensus       237 ~~p~~  241 (409)
                      ++|+.
T Consensus       150 ~~~~~  154 (477)
T 1wao_1          150 IEDEY  154 (477)
T ss_dssp             CCTTC
T ss_pred             ccccc
Confidence            77653

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.52  E-value=1.1e-14  Score=103.08  Aligned_cols=71  Identities=41%  Similarity=0.807  Sum_probs=64.3

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC-----chHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD-----NREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~-----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ...++|++|+|.+.++.++|+++|+++++.+|||++..     ....+++.|+.|++||++|+||.+|..||....
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            34689999999999999999999999999999999763     347889999999999999999999999998654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.52  E-value=3.7e-12  Score=122.73  Aligned_cols=226  Identities=8%  Similarity=-0.034  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHH-HHHHHHHHhh
Q 043837            7 ALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPL-EYIDKVVLVF   85 (409)
Q Consensus         7 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~   85 (409)
                      ....|+++|...|.++..|+..+..+...|+                                 .++|+ .+|.+ ++..
T Consensus       328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~---------------------------------~~~a~r~il~r-Ai~~  373 (679)
T 4e6h_A          328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNT---------------------------------DSTVITKYLKL-GQQC  373 (679)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC---------------------------------CTTHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc---------------------------------HHHHHHHHHHH-HHHh
Confidence            4567788888888888888777776655554                                 44554 66666 6677


Q ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----------CCC-----------CHHHHHHHHHHHHhcCChHHH
Q 043837           86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-----------DEN-----------NLEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~l~~~~~~~~~~~~A  143 (409)
                      .|.+..+|+..+.+....|++++|...|++++..           .|.           ...+|...+......++.+.|
T Consensus       374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A  453 (679)
T 4e6h_A          374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS  453 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence            8988888999999999999999999999999875           243           345788888888888999999


Q ss_pred             HHHHHHHHcc-CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC
Q 043837          144 QRHFQKGLRL-DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG  222 (409)
Q Consensus       144 ~~~~~~al~~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~  222 (409)
                      ...|.+|++. .+....   +|...+.+....        .++++.|..+|+.+++..|+    ...++...+......+
T Consensus       454 R~vf~~A~~~~~~~~~~---lyi~~A~lE~~~--------~~d~e~Ar~ife~~Lk~~p~----~~~~w~~y~~fe~~~~  518 (679)
T 4e6h_A          454 RKIFGKCRRLKKLVTPD---IYLENAYIEYHI--------SKDTKTACKVLELGLKYFAT----DGEYINKYLDFLIYVN  518 (679)
T ss_dssp             HHHHHHHHHTGGGSCTH---HHHHHHHHHHTT--------TSCCHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCChH---HHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHhCC
Confidence            9999999987 333333   444444333222        14589999999999999998    5667888888888899


Q ss_pred             ChhHHHHHHHHHHhcCh---hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          223 RGKDALSSCTEALNINE---ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       223 ~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      +.+.|...|++++...|   ....+|......-...|+.+.+....+++.+..|+++.+...
T Consensus       519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f  580 (679)
T 4e6h_A          519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF  580 (679)
T ss_dssp             CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            99999999999999877   466788888888888999999999999999999998664433

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.51  E-value=2.8e-14  Score=95.43  Aligned_cols=66  Identities=50%  Similarity=0.904  Sum_probs=60.3

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ...++|++|||.+.++..+|+++|+++++.+|||+....    ...|+.|++||++|+||.+|..||.+.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g   71 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQIYDQGG   71 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            456899999999999999999999999999999998654    468999999999999999999999854

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=2.1e-14  Score=97.80  Aligned_cols=68  Identities=50%  Similarity=0.813  Sum_probs=62.2

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..++|++|+|.+.++..+|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||...
T Consensus         6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   73 (79)
T 2dn9_A            6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKRKQYDAYG   73 (79)
T ss_dssp             CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC-TTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence            46899999999999999999999999999999998754 357889999999999999999999999854

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.50  E-value=4.4e-11  Score=115.30  Aligned_cols=221  Identities=10%  Similarity=-0.003  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAI-SETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      .....|++ ++...|..+.+|+..+..+...++.++|. ..|++++...|.+...|..++......|+++.|...|++++
T Consensus       327 Rv~~~Ye~-aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          327 RMTYVYMQ-AAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            35577888 88899999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             ccC-----------CCcH--------HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837          152 RLD-----------PEHS--------ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL  212 (409)
Q Consensus       152 ~~~-----------p~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  212 (409)
                      ...           |.+.        ....+|.....+....         +..+.|...|.+|++..|..   ...+|.
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~---------~~l~~AR~vf~~A~~~~~~~---~~~lyi  473 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI---------QGLAASRKIFGKCRRLKKLV---TPDIYL  473 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH---------HCHHHHHHHHHHHHHTGGGS---CTHHHH
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCC---ChHHHH
Confidence            752           4321        1223566666665555         88999999999999873321   345677


Q ss_pred             HHHHHHHHcC-ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHH
Q 043837          213 GLCKVLVKLG-RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ---DMNIREALMRAEKA  288 (409)
Q Consensus       213 ~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~  288 (409)
                      ..+.+....+ +++.|...|+++++..|+++..+...+......|+.+.|...|++++...|+   ...++......+..
T Consensus       474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~  553 (679)
T 4e6h_A          474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK  553 (679)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            7777766665 4899999999999999999999999999999999999999999999999884   44555555555443


Q ss_pred             HhhcchhhhhhhhcccccCCHHHHHHHHHHHHhcc
Q 043837          289 LKMSKRKDWYKILGVSKTASISEIKRAYKKLALQW  323 (409)
Q Consensus       289 ~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~  323 (409)
                      .+                 +.+.+.+.+.++....
T Consensus       554 ~G-----------------~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          554 VG-----------------SLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             TC-----------------CSHHHHHHHHHHHHHS
T ss_pred             cC-----------------CHHHHHHHHHHHHHhC
Confidence            33                 2556777777755554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.49  E-value=4.5e-13  Score=120.83  Aligned_cols=115  Identities=20%  Similarity=0.233  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHh----------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837           56 QSTFDSALKLYDSGEYTKPLEYIDKVVLV----------------FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE  119 (409)
Q Consensus        56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  119 (409)
                      ..+...|..++..++|++|+..|++ ++.                .+|....++.++|.++..++++++|+.++++++++
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~k-Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTK-VLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHH-HHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            3344555555555555555555555 443                67788999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      +|+++.+++.+|.+|..++++++|+..|+++++++|++..   ++..++.++..+
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~---~~~~l~~~~~~~  354 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA---IQAELLKVKQKI  354 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998   788888887777

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.49  E-value=7.2e-14  Score=104.19  Aligned_cols=99  Identities=19%  Similarity=0.126  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE  263 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  263 (409)
                      |++++|+.+|++++++.++++. ...++.++|.++..+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            8999999999999999532222 788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHH
Q 043837          264 DLKSAAQQSPQDMNIREALM  283 (409)
Q Consensus       264 ~~~~al~~~p~~~~~~~~l~  283 (409)
                      .++++++..|+++.+.....
T Consensus        83 ~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHhCCCcHHHHHHHH
Confidence            99999999999988654433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.49  E-value=1.7e-13  Score=105.13  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=84.0

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY----------ASAISETGYLLKEDENNLEALLHRGRAYYYLA  138 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  138 (409)
                      +.|++|+..+++ +++.+|+++.+|+++|.++..++++          ++|+..|+++|+++|++.++|+++|.+|..+|
T Consensus        16 ~~feeA~~~~~~-Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           16 LLFEQIRQDAEN-TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            457888888988 9999999999999999999999876          59999999999999999999999999999885


Q ss_pred             -----------ChHHHHHHHHHHHccCCCcHH
Q 043837          139 -----------DHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       139 -----------~~~~A~~~~~~al~~~p~~~~  159 (409)
                                 ++++|+.+|++|++++|++..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence                       899999999999999999876

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=3.4e-14  Score=98.70  Aligned_cols=67  Identities=54%  Similarity=0.891  Sum_probs=61.8

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ..++|++|+|.+.++.++|+++|+++++.+|||++..  ..+++.|+.|++||++|+||.+|..||...
T Consensus        16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g   82 (88)
T 2cug_A           16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKRTNYDHYG   82 (88)
T ss_dssp             SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS--TTHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            4689999999999999999999999999999999876  357889999999999999999999999854

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=1.6e-13  Score=100.95  Aligned_cols=107  Identities=19%  Similarity=0.213  Sum_probs=98.0

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837          154 DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE  233 (409)
Q Consensus       154 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  233 (409)
                      +|++..   .+..++.++...         +++++|+..+++++++.|.    ...++.++|.++...|++++|+.++++
T Consensus         2 ~p~~~~---~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~   65 (112)
T 2kck_A            2 VDQNPE---EYYLEGVLQYDA---------GNYTESIDLFEKAIQLDPE----ESKYWLMKGKALYNLERYEEAVDCYNY   65 (112)
T ss_dssp             CCSSTT---GGGGHHHHHHSS---------CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCcHH---HHHHHHHHHHHh---------hhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            566666   677777777666         9999999999999999998    677999999999999999999999999


Q ss_pred             HHhcChh--cHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhhCCCcH
Q 043837          234 ALNINEE--LIEALVQRGEAKLLT-EDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       234 al~~~p~--~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~  276 (409)
                      +++.+|.  +..++..+|.++..+ |++++|++++++++...|.++
T Consensus        66 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999  999999999999999 999999999999999998753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.47  E-value=4.9e-13  Score=120.60  Aligned_cols=137  Identities=23%  Similarity=0.364  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837          124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH  203 (409)
Q Consensus       124 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  203 (409)
                      ...+..+|.+++..+++++|+..|++++.+.+....              .         ..       ......+.|. 
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~--------------~---------~~-------~~~~~~~~~~-  271 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA--------------A---------AE-------DADGAKLQPV-  271 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--------------H---------SC-------HHHHGGGHHH-
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc--------------c---------cC-------hHHHHHHHHH-
Confidence            345777888888888888888888888775432110              0         11       2233344455 


Q ss_pred             ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837          204 TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM  283 (409)
Q Consensus       204 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  283 (409)
                         ...++.++|.++..++++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..+.
T Consensus       272 ---~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~  348 (370)
T 1ihg_A          272 ---ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  348 (370)
T ss_dssp             ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence               66788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhcch
Q 043837          284 RAEKALKMSKR  294 (409)
Q Consensus       284 ~~~~~~~~~~~  294 (409)
                      .+...++..+.
T Consensus       349 ~~~~~~~~~~~  359 (370)
T 1ihg_A          349 KVKQKIKAQKD  359 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77776665443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.47  E-value=4.1e-13  Score=101.76  Aligned_cols=118  Identities=18%  Similarity=0.200  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837          126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA  205 (409)
Q Consensus       126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  205 (409)
                      .++.+|.++...|++++|+.+|++++..+|.+..   ++..++.++...         +++++|+.++++++...|+++.
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~   73 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---YITNQAAVYFEK---------GDYNKCRELCEKAIEVGRENRE   73 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHh---------ccHHHHHHHHHHHHhhccccch
Confidence            3444444444444444444444444444444444   444444444444         5555555555555544443111


Q ss_pred             ---chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837          206 ---HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE  256 (409)
Q Consensus       206 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  256 (409)
                         ....++..+|.++...|++++|+.+++++++..| ++..+..++.+...++
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence               0266889999999999999999999999999988 5777887777766544

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.47  E-value=4.1e-15  Score=129.23  Aligned_cols=67  Identities=46%  Similarity=0.831  Sum_probs=0.0

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ...++|++|+|.++++.++|+++|+++++++|||++..  ..++++|++|++||++|+||++|..||..
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   92 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE--NDAEAKFKDLAEAWEVLKDEQRRAEYDQL   92 (329)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC--hHHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence            34799999999999999999999999999999999875  37889999999999999999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.46  E-value=1.7e-11  Score=113.36  Aligned_cols=188  Identities=12%  Similarity=0.079  Sum_probs=144.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH-------HH
Q 043837            2 KHYSEALDDLNTAIEADPTLS-----------------EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-------QS   57 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~   57 (409)
                      |+|++|++.|.++++..|...                 .++..+|.+|...|++++|...+...+......       ..
T Consensus        18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   97 (434)
T 4b4t_Q           18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL   97 (434)
T ss_dssp             TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            789999999999999988643                 468899999999999999999998887643321       11


Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHH
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVF------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKE------DENNLE  125 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~  125 (409)
                      ....+..+...+++++|+.++.+ ++..      .+....++..+|.++...|+|.+|+..+++++..      .+....
T Consensus        98 ~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~  176 (434)
T 4b4t_Q           98 KTLIEKFEQVPDSLDDQIFVCEK-SIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD  176 (434)
T ss_dssp             HHHHHHHCSCCSCHHHHHHHHHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence            12233444456899999999988 4433      2334678899999999999999999999999875      233466


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837          126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL  199 (409)
Q Consensus       126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  199 (409)
                      ++..++.+|..++++++|...+++++...+   .... ....+..++.++.         ..++|.+|..+|.++++.
T Consensus       177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~---------~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC---------EDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT---------SSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHH
Confidence            899999999999999999999999987643   2222 1223444444443         449999999999999874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.45  E-value=1.4e-13  Score=102.64  Aligned_cols=91  Identities=12%  Similarity=0.067  Sum_probs=84.2

Q ss_pred             CCCchHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837           68 SGEYTKPLEYIDKVVLVF---SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      .|++++|+.+|++ ++..   +|.++.+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus         3 ~g~~~~A~~~~~~-al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEK-AIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHH-HHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            5889999999999 8888   68999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCcHH
Q 043837          145 RHFQKGLRLDPEHSE  159 (409)
Q Consensus       145 ~~~~~al~~~p~~~~  159 (409)
                      ..+++++...|+++.
T Consensus        82 ~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           82 ELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHhCCCcHH
Confidence            999999999999887

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=7.8e-14  Score=101.52  Aligned_cols=69  Identities=35%  Similarity=0.645  Sum_probs=62.9

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ...++|++|+|.+.++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||...
T Consensus        18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   86 (112)
T 2ctq_A           18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESRARYDHWR   86 (112)
T ss_dssp             CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC-STHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence            347899999999999999999999999999999998754 368889999999999999999999999853

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.44  E-value=2e-13  Score=98.75  Aligned_cols=69  Identities=46%  Similarity=0.775  Sum_probs=63.2

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ..++|++|+|.+.++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||....
T Consensus        16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A           16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            46899999999999999999999999999999998764 4688899999999999999999999998553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.44  E-value=9.5e-13  Score=103.71  Aligned_cols=140  Identities=20%  Similarity=0.153  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      ++..+|.++...|++++|+.++++++.+.+.   ......++..++.++...         |++++|+.++++++.+.+.
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL---------GEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555544322   111122444445444444         6666666666666655432


Q ss_pred             --CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          203 --HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       203 --~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                        ++.....++.++|.++...|++++|+.++++++.+.+      ....++..+|.++...|++++|+.++++++++...
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence              1112466788999999999999999999999987633      33677889999999999999999999999987544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.41  E-value=2.8e-12  Score=94.22  Aligned_cols=97  Identities=23%  Similarity=0.339  Sum_probs=85.2

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhc-
Q 043837           61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYL-  137 (409)
Q Consensus        61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-  137 (409)
                      .|..++..+++++|+..+++ ++...|.+..++..+|.++...|++++|+..++++++.+|.  +..++..+|.++..+ 
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~   90 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEK-AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE   90 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHhhhHHHHHHHHHH-HHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence            33444445556667777766 77889999999999999999999999999999999999999  999999999999999 


Q ss_pred             CChHHHHHHHHHHHccCCCcH
Q 043837          138 ADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~~~  158 (409)
                      |++++|+.++++++...|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           91 GKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             SCSHHHHHHHHHHGGGCCCCC
T ss_pred             CCHHHHHHHHHHHhhcccCCC
Confidence            999999999999999998753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.40  E-value=2e-12  Score=101.84  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSEL  160 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~  160 (409)
                      ..++..+|.++...|++++|+..+++++++.+...      .++..+|.++...|++++|+.++++++.+.+.   ....
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            56788899999999999999999999998755322      47889999999999999999999999886433   2223


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN  238 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  238 (409)
                      ..++..++.++...         |++++|+.++++++.+.+.  ++.....++..+|.++...|++++|+.++++++++.
T Consensus        89 ~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           89 AQSCYSLGNTYTLL---------QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            34667777777666         9999999999999986432  222356788999999999999999999999998864


Q ss_pred             h
Q 043837          239 E  239 (409)
Q Consensus       239 p  239 (409)
                      .
T Consensus       160 ~  160 (164)
T 3ro3_A          160 R  160 (164)
T ss_dssp             T
T ss_pred             H
Confidence            4

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.39  E-value=2e-13  Score=99.12  Aligned_cols=70  Identities=34%  Similarity=0.584  Sum_probs=63.7

Q ss_pred             chhhhhhhhcccccC-CHHHHHHHHHHHHhccCCCCCCC--chHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          293 KRKDWYKILGVSKTA-SISEIKRAYKKLALQWHPDKNVD--NREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~-~~~e~~~~y~~~a~~~~~d~~~~--~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ...++|++|||.+.+ +.++|+++|+++++.+|||+...  ....++..|+.|++||++|+||.+|..||...
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~   85 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYL   85 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            357899999999999 99999999999999999999754  45778999999999999999999999999853

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.37  E-value=3.8e-13  Score=92.24  Aligned_cols=62  Identities=26%  Similarity=0.395  Sum_probs=57.6

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhh
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR  355 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~  355 (409)
                      ..++|++|+|..+++.++|+++|++++++||||++......++++|++|++||++|++...|
T Consensus        15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            36789999999999999999999999999999999887778999999999999999988665

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=6.4e-13  Score=92.36  Aligned_cols=63  Identities=37%  Similarity=0.540  Sum_probs=56.9

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhh
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRAR  357 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~  357 (409)
                      ...++|++|+|.+.++.++|+++|+++++++|||++..  ..++++|++|++||++|+||.+|..
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA--PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC--TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCcccccC
Confidence            35789999999999999999999999999999999876  3567789999999999999998753

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.33  E-value=2.7e-13  Score=97.89  Aligned_cols=63  Identities=27%  Similarity=0.406  Sum_probs=57.9

Q ss_pred             hhhhhhhhcccccCCH--HHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          294 RKDWYKILGVSKTASI--SEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~--~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ..++|++|||.+.++.  .+|+++|+++++++|||++..     +++|++|++||++|+||.+|..|+.+
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~~~~~   71 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence            4689999999999998  999999999999999999765     35899999999999999999999864

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.32  E-value=2.2e-12  Score=100.13  Aligned_cols=71  Identities=42%  Similarity=0.812  Sum_probs=63.2

Q ss_pred             cchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCc-----hHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          292 SKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN-----REEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       292 ~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~-----~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ....++|++|||.+.++.++|+++|+++++.+|||+....     +..+.+.|+.|++||++|+||.+|..||...
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3457899999999999999999999999999999996543     3567899999999999999999999999743

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.32  E-value=2.5e-11  Score=89.85  Aligned_cols=84  Identities=21%  Similarity=0.171  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837          188 VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKS  267 (409)
Q Consensus       188 ~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  267 (409)
                      +|+..|+++++.+|+    +..+++++|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|++
T Consensus         3 ~a~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            578999999999999    6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCc
Q 043837          268 AAQQSPQD  275 (409)
Q Consensus       268 al~~~p~~  275 (409)
                      ++++.|+.
T Consensus        79 al~~~~~~   86 (115)
T 2kat_A           79 GLAAAQSR   86 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcccc
Confidence            99998854

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.29  E-value=2.5e-12  Score=86.67  Aligned_cols=62  Identities=18%  Similarity=0.382  Sum_probs=55.4

Q ss_pred             hhhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          294 RKDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       294 ~~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      ..++|++|||.+.  ++..+|+++|+++++++|||+...     .++|++|++||++|+|+.+|.+++-
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~~~~   73 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLRMNL   73 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHHHhc
Confidence            4679999999999  999999999999999999999754     4589999999999999999987543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.29  E-value=5.5e-11  Score=88.00  Aligned_cols=86  Identities=14%  Similarity=0.105  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      ++|+..|.+ ++..+|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++
T Consensus         2 ~~a~~~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            2 QAITERLEA-MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CCHHHHHHH-HHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            467888888 8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcH
Q 043837          152 RLDPEHS  158 (409)
Q Consensus       152 ~~~p~~~  158 (409)
                      .++|...
T Consensus        81 ~~~~~~~   87 (115)
T 2kat_A           81 AAAQSRG   87 (115)
T ss_dssp             HHHHHHT
T ss_pred             Hhccccc
Confidence            9887543

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.29  E-value=5.4e-13  Score=103.12  Aligned_cols=67  Identities=25%  Similarity=0.415  Sum_probs=57.6

Q ss_pred             cchhhhhhhhcccccCC--HHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          292 SKRKDWYKILGVSKTAS--ISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       292 ~~~~~~~~~l~~~~~~~--~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ....++|++|||.++++  .++|+++|+++++++|||++...     ++|++|++||++|+||.+|..||+..+
T Consensus         8 ~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~-----e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC-----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            34578999999999998  59999999999999999997652     589999999999999999999999654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.27  E-value=4e-12  Score=105.15  Aligned_cols=67  Identities=54%  Similarity=0.843  Sum_probs=61.3

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      .++|++|++.++++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~   68 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYG   68 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC-TTHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence            4789999999999999999999999999999998654 367889999999999999999999999854

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.26  E-value=5.6e-12  Score=92.63  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc------HHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH------SELKK  162 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  162 (409)
                      ++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..+++++.++|++      ..   
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK---   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH---
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH---
Confidence            356677888888888888888888888888888888888888888888888888888888888888877      43   


Q ss_pred             HHHHHHHHHHHH
Q 043837          163 AYFALKNLLKKT  174 (409)
Q Consensus       163 ~~~~l~~~~~~~  174 (409)
                      ++..++.++..+
T Consensus        80 ~~~~~~~~~~~~   91 (111)
T 2l6j_A           80 LQYRLELAQGAV   91 (111)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.25  E-value=2e-10  Score=106.69  Aligned_cols=134  Identities=6%  Similarity=-0.112  Sum_probs=117.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHc-----cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc----
Q 043837          129 HRGRAYYYLADHDVAQRHFQKGLR-----LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL----  199 (409)
Q Consensus       129 ~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----  199 (409)
                      ..+..+..+|+|++|+..+++++.     +.|+++.+...+.+++.++..+         |+|++|+.++++++.+    
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~---------g~~~eA~~~~~~aL~i~~~~  384 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL---------QAYEEASHYARRMVDGYMKL  384 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHHHH
Confidence            344557789999999999999997     4688999888999999999888         9999999999999974    


Q ss_pred             -CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          200 -DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       200 -~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                       .|++|. .+..+.++|.+|..+|++++|+..+++|+++        +|...+....++.++..++.+++|...|.++.+
T Consensus       385 lG~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          385 YHHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             SCTTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             566666 7889999999999999999999999999975        455567778899999999999999999999866


Q ss_pred             hC
Q 043837          271 QS  272 (409)
Q Consensus       271 ~~  272 (409)
                      ..
T Consensus       464 ~~  465 (490)
T 3n71_A          464 AA  465 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.24  E-value=9.6e-12  Score=91.33  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALL  128 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  128 (409)
                      ...++..|..++..|++++|+..|++ ++..+|.++.++..+|.++..+|++++|+..++++++++|++      ..+++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQ-LITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            45667788888899999999999999 899999999999999999999999999999999999999999      88999


Q ss_pred             HHHHHHHhcCChHHHHHHHHH
Q 043837          129 HRGRAYYYLADHDVAQRHFQK  149 (409)
Q Consensus       129 ~l~~~~~~~~~~~~A~~~~~~  149 (409)
                      .+|.++..+|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999999888776654

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.24  E-value=1.1e-12  Score=89.96  Aligned_cols=73  Identities=25%  Similarity=0.372  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCc--hHHHHHHHHHHHHHHHhcCC
Q 043837          277 NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN--REEAENKFREIAAAYEVLGD  351 (409)
Q Consensus       277 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~--~~~a~~~~~~i~~ay~~l~d  351 (409)
                      +++..|..+...+...  .++|++||+.+.++..+|+++||++++.+|||+++..  ...++.+|++|++||++|.+
T Consensus        17 ~ir~lL~~l~~~L~~~--~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           17 NIRALLSTMHTVLWAG--ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CHHHHHHHGGGTSCTT--CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc--ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            3555555544444322  4789999999999999999999999999999997653  24689999999999999863

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.24  E-value=7.4e-08  Score=90.08  Aligned_cols=237  Identities=10%  Similarity=0.015  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      .+...|++ ++...|..+.+|+..+..+...|+.++|...|++++.. |.+...+...+...    +.++....+..+..
T Consensus       197 Rv~~~ye~-al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~l~~~~~  270 (493)
T 2uy1_A          197 RMHFIHNY-ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGDLKRKYS  270 (493)
T ss_dssp             HHHHHHHH-HHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHHHHHHTC
T ss_pred             HHHHHHHH-HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHHHHHHHH
Confidence            35667777 77777888888888888888888888888888888888 88766655444331    11122222222211


Q ss_pred             cCC-------CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC-Ch
Q 043837          153 LDP-------EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG-RG  224 (409)
Q Consensus       153 ~~p-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~-~~  224 (409)
                      ...       .......+|..........         +..+.|...|.++ . .|..   ...+|...|.+-...+ +.
T Consensus       271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~---------~~~~~AR~i~~~A-~-~~~~---~~~v~i~~A~lE~~~~~d~  336 (493)
T 2uy1_A          271 MGEAESAEKVFSKELDLLRINHLNYVLKK---------RGLELFRKLFIEL-G-NEGV---GPHVFIYCAFIEYYATGSR  336 (493)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHH---------HCHHHHHHHHHHH-T-TSCC---CHHHHHHHHHHHHHHHCCS
T ss_pred             hhccchhhhhcccccHHHHHHHHHHHHHc---------CCHHHHHHHHHHh-h-CCCC---ChHHHHHHHHHHHHHCCCh
Confidence            111       1111223455555544444         7799999999999 3 3431   4556666676666555 69


Q ss_pred             hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhccc
Q 043837          225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVS  304 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  304 (409)
                      +.|...|+.+++..|+.+..+...+......|+.+.|...|+++    +....++......+...+              
T Consensus       337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G--------------  398 (493)
T 2uy1_A          337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVG--------------  398 (493)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS--------------
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC--------------
Confidence            99999999999988988888888888888999999999999987    344556655555544433              


Q ss_pred             ccCCHHHHHHHHHHHHhcc------CCCCCCC---chHHHHHHHHHHHHHHHhcC
Q 043837          305 KTASISEIKRAYKKLALQW------HPDKNVD---NREEAENKFREIAAAYEVLG  350 (409)
Q Consensus       305 ~~~~~~e~~~~y~~~a~~~------~~d~~~~---~~~~a~~~~~~i~~ay~~l~  350 (409)
                         +.+.+++.+++.....      +|...-+   ..++..-.+.+|..-|++|.
T Consensus       399 ---~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~  450 (493)
T 2uy1_A          399 ---SMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLD  450 (493)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTT
T ss_pred             ---CHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhc
Confidence               2444555555433221      1221111   22344456777788887776

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.22  E-value=9.2e-12  Score=97.50  Aligned_cols=66  Identities=23%  Similarity=0.387  Sum_probs=59.9

Q ss_pred             hhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCCc----hHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          296 DWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDN----REEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       296 ~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~~----~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      +||.+||+.+.+  +..+|+++|+++++.+|||+++..    +..+...|..|++||++|+||.+|..||..
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~   73 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            689999999999  999999999999999999997643    345778999999999999999999999974

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.22  E-value=4.5e-12  Score=98.62  Aligned_cols=64  Identities=23%  Similarity=0.444  Sum_probs=58.0

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCch--HHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNR--EEAENKFREIAAAYEVLGDDDKRARY  358 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~--~~a~~~~~~i~~ay~~l~d~~~~~~~  358 (409)
                      .++|++|+|...++..+|+++|+++++.+|||++....  ..++++|+.|++||++|+||.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            58999999999999999999999999999999976532  34889999999999999999999865

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.21  E-value=1.8e-10  Score=81.03  Aligned_cols=83  Identities=35%  Similarity=0.355  Sum_probs=72.6

Q ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837           88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL  167 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l  167 (409)
                      .++.+++.+|.++...+++++|+..++++++.+|+++.+++.+|.++...+++++|+.++++++.++|++..   ++..+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~l   83 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH---HHHHH
Confidence            457788889999999999999999999999999999999999999999999999999999999999998887   78888


Q ss_pred             HHHHHH
Q 043837          168 KNLLKK  173 (409)
Q Consensus       168 ~~~~~~  173 (409)
                      +.++..
T Consensus        84 ~~~~~~   89 (91)
T 1na3_A           84 GNAKQK   89 (91)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777654

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=99.49  Aligned_cols=67  Identities=18%  Similarity=0.349  Sum_probs=59.6

Q ss_pred             hhhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          294 RKDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       294 ~~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      ..++|++||+.+.  ++..+|+++|+++++++|||++..    ++..+.++|+.|++||++|+||.+|..||.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            4689999999986  689999999999999999999764    345677899999999999999999999985

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.18  E-value=3.5e-10  Score=79.50  Aligned_cols=82  Identities=21%  Similarity=0.303  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      ...++..+|.++...+++++|+.++++++..+|+++.++..+|.++...|++++|+.+++++++++|++..+...+..+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999888877765


Q ss_pred             HH
Q 043837          287 KA  288 (409)
Q Consensus       287 ~~  288 (409)
                      ..
T Consensus        88 ~~   89 (91)
T 1na3_A           88 QK   89 (91)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.18  E-value=4e-10  Score=104.61  Aligned_cols=134  Identities=15%  Similarity=0.075  Sum_probs=115.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCcHHH
Q 043837           94 LLKVKLLLAAKDYASAISETGYLLKE-----DENNL---EALLHRGRAYYYLADHDVAQRHFQKGLR-----LDPEHSEL  160 (409)
Q Consensus        94 ~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~  160 (409)
                      ...+..+..+|+|++|+..+++++++     .|+++   .++.++|.+|..+|+|++|+.++++++.     +-|+++.+
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34455677889999999999999975     34444   4688999999999999999999999997     46889998


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc-----cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA-----LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      ...+.+++.++...         |++++|+.+|++|++     +.|++|. ...+..+++.++..++.+++|...|.++.
T Consensus       393 a~~l~nLa~~~~~~---------G~~~eA~~~~~~Al~i~~~~lG~~Hp~-~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          393 GMAVMRAGLTNWHA---------GHIEVGHGMICKAYAILLVTHGPSHPI-TKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCTTSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999888         999999999999997     4677776 77888999999999999999999998886


Q ss_pred             hc
Q 043837          236 NI  237 (409)
Q Consensus       236 ~~  237 (409)
                      +.
T Consensus       463 ~~  464 (490)
T 3n71_A          463 EA  464 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.15  E-value=1.1e-10  Score=84.04  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=67.9

Q ss_pred             hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837           85 FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus        85 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++.+.|...
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999876543

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.15  E-value=6.5e-12  Score=89.45  Aligned_cols=59  Identities=19%  Similarity=0.334  Sum_probs=52.0

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC------chHHHHHHHHHHHHHHHhcCChh
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD------NREEAENKFREIAAAYEVLGDDD  353 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~------~~~~a~~~~~~i~~ay~~l~d~~  353 (409)
                      ..+||.+|++.. ++..+|+++||++++.+|||+++.      .+..++++|++|++||++|+|++
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            368999999986 999999999999999999999653      23468999999999999999986

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.14  E-value=1.5e-10  Score=83.21  Aligned_cols=70  Identities=10%  Similarity=0.130  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      ++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|++++++.|...
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            7789999999999999999999999999999999999999999999999999999999999999977543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.12  E-value=8.4e-09  Score=86.58  Aligned_cols=119  Identities=13%  Similarity=0.082  Sum_probs=95.2

Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHh--hHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-----CCh
Q 043837          152 RLDPEHSELKKAYFALKNLLKKTKSAE--DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-----GRG  224 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-----~~~  224 (409)
                      ..+|++.+   .++..+.+....-.+.  ..-..+....|...++++++++|+..  ...+|..+|.+|...     |+.
T Consensus       146 ~~~~~dve---~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~--~GsA~~~LG~lY~~vPp~~gGd~  220 (301)
T 3u64_A          146 RCTRVDVG---TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ--EGAVWNVLTKFYAAAPESFGGGM  220 (301)
T ss_dssp             TCCGGGHH---HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHHHHHHHSCTTTTCCH
T ss_pred             HcCccccH---HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHhCCCccCCCH
Confidence            45677777   7777776664431110  00111456789999999999999832  355999999999995     999


Q ss_pred             hHHHHHHHHHHhcChhc-HHHHHHHHHHHHhc-cCHHHHHHHHHHHHhhCCCc
Q 043837          225 KDALSSCTEALNINEEL-IEALVQRGEAKLLT-EDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       225 ~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~  275 (409)
                      ++|..+|+++++++|+. ..+++..|..+... +++++|..++++++...|..
T Consensus       221 ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          221 EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999975 99999999999885 99999999999999998874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.10  E-value=9.8e-11  Score=84.00  Aligned_cols=90  Identities=13%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK-AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      +..|..++..|++++|+..|++ ++..+|.++. +++.+|.++...|++++|+..|+++++++|++..++..        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEE-FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-HHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            4455566666666666666666 6666666666 66666666666666666666666666666666665533        


Q ss_pred             CChHHHHHHHHHHHccCCCc
Q 043837          138 ADHDVAQRHFQKGLRLDPEH  157 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~~  157 (409)
                      +.+.+++..|++++..+|++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHHhccCccc
Confidence            33455555555555554443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.09  E-value=5.6e-09  Score=91.49  Aligned_cols=152  Identities=11%  Similarity=0.067  Sum_probs=103.9

Q ss_pred             hCCCcHHH--HHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           85 FSPACSKA--KLLKVKLLLAAK---DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        85 ~~p~~~~~--~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..|.++.+  ++.+|..++..+   +..+|+.+|+++++++|+++.++-.++.+|..           .....  |....
T Consensus       189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-----------~~~~~--~~~~~  255 (372)
T 3ly7_A          189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-----------RHSQH--PLDEK  255 (372)
T ss_dssp             HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HHHHS--CCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------HhccC--CCchh
Confidence            34554333  344555555443   34677777777777777777777777776661           11111  11111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE  239 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  239 (409)
                         ...                   ....++.. ..++..+|.    .+.++..++.++...|++++|+..+++++.++|
T Consensus       256 ---~~~-------------------~l~~a~~a-~~a~~~~~~----~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~  308 (372)
T 3ly7_A          256 ---QLA-------------------ALNTEIDN-IVTLPELNN----LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM  308 (372)
T ss_dssp             ---HHH-------------------HHHHHHHH-HHTCGGGTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             ---hHH-------------------HHHHHHHH-HHhcccCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence               000                   01122221 123455666    677999999999999999999999999999997


Q ss_pred             hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      + ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus       309 s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          309 S-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            4 678899999999999999999999999999998753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.09  E-value=1.4e-07  Score=88.27  Aligned_cols=264  Identities=9%  Similarity=0.021  Sum_probs=161.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHhHHHHHHHHHH---HHHHHHHHHHHHHHh-----CCCch
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-VKARNSVAEKELSQL---LQAQSTFDSALKLYD-----SGEYT   72 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~---~~~~~~~~~a~~~~~-----~~~~~   72 (409)
                      ++++.+..+|++++...| +.+.|..........+. .+.....+..++...   ......+.....++.     +++.+
T Consensus        28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~  106 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE  106 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence            577888888999988888 77788777777666653 233344444444321   111122222222222     23344


Q ss_pred             HHHHHHHHHHHhhCCC-------------------------------------------------cHHHHHHHHHHHHHc
Q 043837           73 KPLEYIDKVVLVFSPA-------------------------------------------------CSKAKLLKVKLLLAA  103 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~-------------------------------------------------~~~~~~~~a~~~~~~  103 (409)
                      .+..+|++ ++...+.                                                 +...|......  ..
T Consensus       107 ~vR~iy~r-AL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~  183 (493)
T 2uy1_A          107 KIRNGYMR-ALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EM  183 (493)
T ss_dssp             HHHHHHHH-HHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HH
T ss_pred             HHHHHHHH-HHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--Hh
Confidence            55555555 3332111                                                 11122222211  11


Q ss_pred             cC---------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          104 KD---------YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       104 ~~---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      ++         .......|++++...|..+..|+..+..+...|+.+.|...|++++.. |.+..   .+...+.... .
T Consensus       184 ~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~---l~~~y~~~~e-~  258 (493)
T 2uy1_A          184 ENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF---LSLYYGLVMD-E  258 (493)
T ss_dssp             TCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH---HHHHHHHHTT-C
T ss_pred             cCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH---HHHHHHhhcc-h
Confidence            21         345678999999999999999999999999999999999999999999 98876   4443332210 0


Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccCCC------CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHH
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALDPN------HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR  248 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  248 (409)
                               .   +....+..+......      .......+|...+......++.+.|...|.++ ...+.....|...
T Consensus       259 ---------~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~  325 (493)
T 2uy1_A          259 ---------E---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYC  325 (493)
T ss_dssp             ---------T---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHH
T ss_pred             ---------h---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHH
Confidence                     0   111111111110100      00113467888888888888999999999999 4433456677777


Q ss_pred             HHHHHhcc-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          249 GEAKLLTE-DWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       249 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      |.+....+ +.+.|...|+.+++..|+++..+........
T Consensus       326 A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~  365 (493)
T 2uy1_A          326 AFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL  365 (493)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            77777666 6999999999999999998877555444433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.09  E-value=7.1e-09  Score=87.02  Aligned_cols=186  Identities=12%  Similarity=0.010  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHH------hHHHHHHHHHHHHHHHHHHHHHHHHh------CCCch
Q 043837            6 EALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-VKAR------NSVAEKELSQLLQAQSTFDSALKLYD------SGEYT   72 (409)
Q Consensus         6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A------~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~   72 (409)
                      -.+..++-.+..+|++...+...+..|..-.. +-+.      ...+.........+...|.+|..+..      ...+.
T Consensus        50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~  129 (301)
T 3u64_A           50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFT  129 (301)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            35678888899999999888777777654432 1111      00111111122233334443333211      12233


Q ss_pred             HHHH-----HHHHHHHhhCCCcHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 043837           73 KPLE-----YIDKVVLVFSPACSKAKLLKVKLLLA---A--K------DYASAISETGYLLKEDEN--NLEALLHRGRAY  134 (409)
Q Consensus        73 ~A~~-----~~~~~~~~~~p~~~~~~~~~a~~~~~---~--~------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~  134 (409)
                      +++.     -+...+...+|.++.+++..|.+...   .  +      ....|...++++++++|+  +..+|..+|.+|
T Consensus       130 ~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY  209 (301)
T 3u64_A          130 REVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFY  209 (301)
T ss_dssp             HHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence            2222     23343556688999999888887653   1  2      357899999999999999  566999999999


Q ss_pred             Hhc-----CChHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHHHH-HHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837          135 YYL-----ADHDVAQRHFQKGLRLDPEH-SELKKAYFALKNLLKK-TKSAEDNVSKGKLRVAVEDFKAALALDPNH  203 (409)
Q Consensus       135 ~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  203 (409)
                      ...     |+.++|..+|+++++++|+. ..   .++.++..+.. .         +++++|..++++++...|..
T Consensus       210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id---~~v~YA~~l~~~~---------gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPD---HHITYADALCIPL---------NNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH---HHHHHHHHTTTTT---------TCHHHHHHHHHHHHHCCGGG
T ss_pred             HhCCCccCCCHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHhc---------CCHHHHHHHHHHHHcCCCCC
Confidence            995     99999999999999999975 77   77777776543 3         89999999999999998874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.08  E-value=1.8e-10  Score=82.65  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVH-LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV  262 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  262 (409)
                      |++++|+..++++++.+|+    +.. ++.++|.++..+|++++|+..|+++++++|++..++..        +.+.+|+
T Consensus        14 ~~~~~A~~~~~~al~~~p~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~   81 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPV----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDIL   81 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSS----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHH
Confidence            5555555555555555555    444 55555555555555555555555555555555544432        3444555


Q ss_pred             HHHHHHHhhCCC
Q 043837          263 EDLKSAAQQSPQ  274 (409)
Q Consensus       263 ~~~~~al~~~p~  274 (409)
                      ..|++++..+|+
T Consensus        82 ~~~~~~~~~~p~   93 (99)
T 2kc7_A           82 NFYNKDMYNQLE   93 (99)
T ss_dssp             HHHCCTTHHHHC
T ss_pred             HHHHHHhccCcc
Confidence            555555544444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.05  E-value=4.1e-09  Score=79.89  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcC-h-hcHHHHHHHHHHHHhccCH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG---RGKDALSSCTEALNIN-E-ELIEALVQRGEAKLLTEDW  258 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~  258 (409)
                      .....+.+.|.+.+..++.    +..+.+++|+++.+..   +.++++..++.+++.+ | ++.++++++|..++++++|
T Consensus        12 ~~l~~~~~~y~~e~~~~~~----~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y   87 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   87 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHHHccCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence            3455677778888877776    7889999999999998   6779999999999998 8 6799999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          259 EGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       259 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      ++|+++++++++++|++..+......+...+
T Consensus        88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           88 EKALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999887776665544

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.05  E-value=4e-11  Score=94.49  Aligned_cols=66  Identities=23%  Similarity=0.421  Sum_probs=58.2

Q ss_pred             hcchhhhhhhh------cccc-cCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          291 MSKRKDWYKIL------GVSK-TASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       291 ~~~~~~~~~~l------~~~~-~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      .....+||.+|      ++.. +++..+|+++|+++++.+|||++..    +...|+.|++||++|+||.+|..||.
T Consensus         7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~~Yd~   79 (181)
T 3uo3_A            7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRSQYML   79 (181)
T ss_dssp             CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            34457999999      4554 8899999999999999999999875    56689999999999999999999997

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.04  E-value=6e-09  Score=79.63  Aligned_cols=109  Identities=17%  Similarity=0.075  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH----HHHHhhH
Q 043837          105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK----TKSAEDN  180 (409)
Q Consensus       105 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~----~~~~~~~  180 (409)
                      ++++|+.+|+++.+.....  +.  +|.+|.....+++|+.+|+++.+.  .++.   +++.++.++..    .      
T Consensus        10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~---a~~~Lg~~y~~G~g~~------   74 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGN---GCRFLGDFYENGKYVK------   74 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHCSSSC------
T ss_pred             CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHH---HHHHHHHHHHcCCCCC------
Confidence            4555566666655554322  22  555555555555555555555544  2333   44444444433    2      


Q ss_pred             HhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhc
Q 043837          181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEALNI  237 (409)
Q Consensus       181 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~  237 (409)
                         +++++|+.+|+++.+.  .    ++.+++++|.+|..    .+++++|+.+|+++.+.
T Consensus        75 ---~d~~~A~~~~~~Aa~~--g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           75 ---KDLRKAAQYYSKACGL--N----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             ---CCHHHHHHHHHHHHHT--T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ---ccHHHHHHHHHHHHcC--C----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence               4455555555554443  1    23345555555555    45555555555555444

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.04  E-value=8.1e-11  Score=77.59  Aligned_cols=56  Identities=25%  Similarity=0.307  Sum_probs=49.5

Q ss_pred             hhhhhhhcccc-cCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhh
Q 043837          295 KDWYKILGVSK-TASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR  355 (409)
Q Consensus       295 ~~~~~~l~~~~-~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~  355 (409)
                      .++|++||+.+ .++.++|+++|+++++.+|||+...     ..+|++|++||++|+++..|
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence            57899999998 7999999999999999999999533     34899999999999987654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.99  E-value=1.6e-08  Score=88.66  Aligned_cols=149  Identities=15%  Similarity=0.096  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 043837           53 LQAQSTFDSALKLYDSGE---YTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH  129 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  129 (409)
                      ..+...|-+|..++..++   ..+|+.+|++ +++.+|+.+.++..++.+|...             ....|........
T Consensus       194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~-Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~~~~~~~~  259 (372)
T 3ly7_A          194 GALLTNFYQAHDYLLHGDDKSLNRASELLGE-IVQSSPEFTYARAEKALVDIVR-------------HSQHPLDEKQLAA  259 (372)
T ss_dssp             GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHH-------------HHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH-------------hccCCCchhhHHH
Confidence            346677888888877644   5899999999 9999999999999999999811             1111222221111


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVH  209 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  209 (409)
                                ...++.. ..++..+|.++.   ++..++......         |++++|+..+++++.++|+     ..
T Consensus       260 ----------l~~a~~a-~~a~~~~~~~a~---~~~alal~~l~~---------gd~d~A~~~l~rAl~Ln~s-----~~  311 (372)
T 3ly7_A          260 ----------LNTEIDN-IVTLPELNNLSI---IYQIKAVSALVK---------GKTDESYQAINTGIDLEMS-----WL  311 (372)
T ss_dssp             ----------HHHHHHH-HHTCGGGTTCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCCC-----HH
T ss_pred             ----------HHHHHHH-HHhcccCCcCHH---HHHHHHHHHHhC---------CCHHHHHHHHHHHHhcCCC-----HH
Confidence                      1223331 134467788887   777777766666         9999999999999999965     56


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837          210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIE  243 (409)
Q Consensus       210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  243 (409)
                      .+..+|.++...|++++|++.|.+|+.++|....
T Consensus       312 a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          312 NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            7889999999999999999999999999998753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.97  E-value=9.6e-09  Score=72.11  Aligned_cols=74  Identities=11%  Similarity=-0.048  Sum_probs=69.3

Q ss_pred             CCCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           86 SPACSKAKLLKVKLLLAAKD---YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        86 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      +|.++.++..+|.+++..++   .++|...++++++++|+++.+++.+|.+++..|+|++|+.++++++..+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            68899999999999987766   799999999999999999999999999999999999999999999999998544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.93  E-value=3.1e-08  Score=90.49  Aligned_cols=111  Identities=11%  Similarity=0.032  Sum_probs=92.4

Q ss_pred             HHHHHHhhHHhcCCHHHHHHHHHHHHc-----cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------C
Q 043837          172 KKTKSAEDNVSKGKLRVAVEDFKAALA-----LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------N  238 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~  238 (409)
                      ..+......-..|+|++|+..++++++     +.|+++. ....+.++|.+|..+|+|++|+.++++++.+        +
T Consensus       300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  378 (433)
T 3qww_A          300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVY-MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS  378 (433)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            333444444556899999999999998     4566665 7889999999999999999999999999976        5


Q ss_pred             hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-----CCCcHHHHHHHH
Q 043837          239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ-----SPQDMNIREALM  283 (409)
Q Consensus       239 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~  283 (409)
                      |+-...+.++|.+|..+|++++|+..|++|+++     .|+++.+.....
T Consensus       379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~  428 (433)
T 3qww_A          379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ  428 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            667788999999999999999999999999985     577777665443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.93  E-value=2.2e-08  Score=76.42  Aligned_cols=112  Identities=14%  Similarity=0.067  Sum_probs=92.4

Q ss_pred             CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHH
Q 043837           69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQ  144 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~  144 (409)
                      +++++|+..|.+ +.+..+  +.+.  +|.+|.....+++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+
T Consensus         9 ~d~~~A~~~~~~-aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVK-ACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHH-HHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHH-HHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            356788888887 444442  3333  999999999999999999999986  678999999999998    89999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDP  201 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~  201 (409)
                      .+|+++.+.  .++.   ++.+++.++..    .         +++++|+.+|+++.+...
T Consensus        82 ~~~~~Aa~~--g~~~---a~~~Lg~~y~~G~g~~---------~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           82 QYYSKACGL--NDQD---GCLILGYKQYAGKGVV---------KNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHT--TCHH---HHHHHHHHHHHTSSSC---------CCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcC--CCHH---HHHHHHHHHHCCCCCC---------cCHHHHHHHHHHHHHCCC
Confidence            999999886  5566   88889988876    5         899999999999998743

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.92  E-value=1.4e-08  Score=71.23  Aligned_cols=71  Identities=10%  Similarity=0.095  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          207 NVHLYLGLCKVLVKLGR---GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                      ++.++..+|.+++..++   .++|...++++++++|+++.+++.+|.+++..|+|++|+.+|+++++.+|.++.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            67899999999987666   799999999999999999999999999999999999999999999999998544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.86  E-value=3.1e-08  Score=75.06  Aligned_cols=86  Identities=14%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCChHHHHHHH
Q 043837           73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---DYASAISETGYLLKED-E-NNLEALLHRGRAYYYLADHDVAQRHF  147 (409)
Q Consensus        73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~~  147 (409)
                      .+.+.|.+ .+..+|.+..+.+.+|.++.+..   +.++++..++.+++.+ | +..++++++|..++++++|++|+.++
T Consensus        16 ~~~~~y~~-e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           16 KFEKKFQS-EKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHH-HHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHH-HHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            44455555 56667889999999999999988   7779999999999998 7 56889999999999999999999999


Q ss_pred             HHHHccCCCcHH
Q 043837          148 QKGLRLDPEHSE  159 (409)
Q Consensus       148 ~~al~~~p~~~~  159 (409)
                      +++++++|++..
T Consensus        95 ~~lL~ieP~n~Q  106 (152)
T 1pc2_A           95 RGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHCTTCHH
T ss_pred             HHHHhcCCCCHH
Confidence            999999999988

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.81  E-value=8.5e-08  Score=87.73  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=91.7

Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHcc-----CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------Chhc
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALAL-----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------NEEL  241 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~  241 (409)
                      .....+..+|+|++|+..+++++++     .|+++. ...++.+++.+|..+|+|++|+.++++++.+        +|.-
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~  370 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR  370 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence            3345566779999999999999975     455655 7889999999999999999999999999975        5666


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhh-----CCCcHHHHHHHHH
Q 043837          242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ-----SPQDMNIREALMR  284 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~  284 (409)
                      ...+.++|.+|..+|++++|+..|++|+++     .|+++.+...+..
T Consensus       371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~  418 (429)
T 3qwp_A          371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL  418 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            788999999999999999999999999975     5777776655433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.78  E-value=2.1e-07  Score=85.12  Aligned_cols=114  Identities=11%  Similarity=-0.055  Sum_probs=94.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-----C
Q 043837          131 GRAYYYLADHDVAQRHFQKGLRL-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-----D  200 (409)
Q Consensus       131 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~  200 (409)
                      ..-+..+|++++|+..+++++.+     .|+++.....+.+++.++..+         |+|++|+.++++++.+     .
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~---------g~~~eA~~~~~~~L~i~~~~lg  364 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL---------GLLEEALFYGTRTMEPYRIFFP  364 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHhHHHHcC
Confidence            34456789999999999999974     688888888999999999888         9999999999999974     4


Q ss_pred             CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----Chhc---HHHHHHHHHHHHh
Q 043837          201 PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-----NEEL---IEALVQRGEAKLL  254 (409)
Q Consensus       201 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~  254 (409)
                      |++|. ....++++|.+|..+|++++|+..+++|+++     .|++   ..++.+++.+...
T Consensus       365 ~~Hp~-~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          365 GSHPV-RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             SSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            66665 7889999999999999999999999999975     3444   4455556665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.78  E-value=1e-07  Score=68.65  Aligned_cols=83  Identities=16%  Similarity=-0.006  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-------hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-------EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      ++.-++.+|..++..++|..|+.++++|++..       +..+.++..+|.++.++|+++.|+..+++++++.|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45678899999999999999999999999863       34678999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHH
Q 043837          280 EALMRAEKAL  289 (409)
Q Consensus       280 ~~l~~~~~~~  289 (409)
                      ..+......+
T Consensus        84 ~n~~~~~~~~   93 (104)
T 2v5f_A           84 GNLKYFEYIM   93 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            7766555443

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.76  E-value=1.1e-09  Score=108.96  Aligned_cols=70  Identities=51%  Similarity=0.822  Sum_probs=40.2

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ...++|++||+.+.++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||+..+
T Consensus        19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~   88 (780)
T 3apo_A           19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   88 (780)
T ss_dssp             ----CHHHHTCCTTCCHHHHHHHHCC------------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence            457899999999999999999999999999999998644 4688899999999999999999999998543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.71  E-value=3e-07  Score=83.95  Aligned_cols=102  Identities=6%  Similarity=-0.027  Sum_probs=88.1

Q ss_pred             HHhcCChHHHHHHHHHHHc-----cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-----CCCC
Q 043837          134 YYYLADHDVAQRHFQKGLR-----LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-----DPNH  203 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~  203 (409)
                      ....|+|++|+..+++++.     +.|+++.+...+.+++.++..+         |+|++|+.++++++.+     .|++
T Consensus       308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~---------g~~~eA~~~~~~aL~i~~~~lG~~H  378 (433)
T 3qww_A          308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM---------QDWEGALKYGQKIIKPYSKHYPVYS  378 (433)
T ss_dssp             HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3456889999999999997     5789999888999999999888         9999999999999974     5666


Q ss_pred             ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----ChhcHHHH
Q 043837          204 TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-----NEELIEAL  245 (409)
Q Consensus       204 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~  245 (409)
                      |. .+..+.++|.+|..+|++++|+..+++|+++     .|+++.+.
T Consensus       379 p~-~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          379 LN-VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             hH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            66 8889999999999999999999999999976     45555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.65  E-value=5.8e-07  Score=65.52  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhH---HHHHHHHHHhcC-h-hcHHHHHHHHHHHHhccCH
Q 043837          184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKD---ALSSCTEALNIN-E-ELIEALVQRGEAKLLTEDW  258 (409)
Q Consensus       184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~  258 (409)
                      .....+...|.+.+..++.    +..+.+++|+++....+...   ++..++..+..+ | ..-+.++.+|..++++|+|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~----s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence            4445566677777766654    67899999999999888766   999999999887 6 6789999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          259 EGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       259 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      ++|+.+++.+++..|++.++......+...+.
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999998877766665443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.63  E-value=4.9e-07  Score=65.02  Aligned_cols=77  Identities=26%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKED-------ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      ++.-.+.+|..++..++|..|+..|+.+++..       +..+.++..+|.+++.+|+++.|+.++++++.++|++..  
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~--   81 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR--   81 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--
Confidence            45567788999999999999999999988863       345678889999999999999999999999999999887  


Q ss_pred             HHHHHHH
Q 043837          162 KAYFALK  168 (409)
Q Consensus       162 ~~~~~l~  168 (409)
                       +..++.
T Consensus        82 -~~~n~~   87 (104)
T 2v5f_A           82 -ANGNLK   87 (104)
T ss_dssp             -HHHHHH
T ss_pred             -HHhhHH
Confidence             556655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.31  E-value=8.1e-06  Score=59.48  Aligned_cols=83  Identities=11%  Similarity=0.107  Sum_probs=71.4

Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837           76 EYIDKVVLVFSPACSKAKLLKVKLLLAAKDYAS---AISETGYLLKED-E-NNLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus        76 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                      ..|.+ ....++.+..+.+.+|.++....+...   ++..++.+++.+ | ..-+.++.+|..++++|+|++|..+++.+
T Consensus        22 ~~y~~-e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l  100 (126)
T 1nzn_A           22 KKFQS-EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL  100 (126)
T ss_dssp             HHHHH-HHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHH-HhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33434 455567889999999999999887766   999999999887 5 46678999999999999999999999999


Q ss_pred             HccCCCcHH
Q 043837          151 LRLDPEHSE  159 (409)
Q Consensus       151 l~~~p~~~~  159 (409)
                      |+..|++..
T Consensus       101 L~~eP~n~Q  109 (126)
T 1nzn_A          101 LQTEPQNNQ  109 (126)
T ss_dssp             HHHCTTCHH
T ss_pred             HHhCCCCHH
Confidence            999999988

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.26  E-value=0.0002  Score=66.95  Aligned_cols=167  Identities=10%  Similarity=-0.021  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHcc--CCCcHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKED-ENNLEALLHRGRAYYYLAD---------HDVAQRHFQKGLRL--DPEHSE  159 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~al~~--~p~~~~  159 (409)
                      .+...-..+.+.|+.++|++.|++..+.. +-+...|..+-.++...+.         .++|.+.|++....  .|+.. 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~-  106 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA-  106 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH-
Confidence            34555677788999999999999988753 2245666666666655443         67899999887764  45544 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                         .|..+...+...         |++++|..++++..+.  .|+     ...|..+-..|.+.|+.++|.+.+++..+.
T Consensus       107 ---tyn~lI~~~~~~---------g~~~~A~~l~~~M~~~g~~Pd-----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          107 ---TFTNGARLAVAK---------DDPEMAFDMVKQMKAFGIQPR-----LRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             ---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCc-----cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence               577777777777         9999999999998764  454     668888899999999999999999998875


Q ss_pred             --ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--CCCcHH
Q 043837          238 --NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ--SPQDMN  277 (409)
Q Consensus       238 --~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~  277 (409)
                        .| +...|..+-.++.+.|+.++|.+.+++..+.  .|+...
T Consensus       170 G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T  212 (501)
T 4g26_A          170 EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST  212 (501)
T ss_dssp             TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred             CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence              34 5678888999999999999999999998764  465443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.23  E-value=0.00021  Score=66.77  Aligned_cols=154  Identities=11%  Similarity=0.013  Sum_probs=83.2

Q ss_pred             HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 043837           65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---------DYASAISETGYLLKED-ENNLEALLHRGRAY  134 (409)
Q Consensus        65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  134 (409)
                      +.+.|+.++|+.+|+++...--+.+..+|..+-.++...+         ..++|.+.|++..... +-+..+|..+-..|
T Consensus        36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~  115 (501)
T 4g26_A           36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA  115 (501)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            3445666666666665322222223444444444443322         2556666666655432 11455566666666


Q ss_pred             HhcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCccchHHH
Q 043837          135 YYLADHDVAQRHFQKGLRL--DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTAHNVHL  210 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~  210 (409)
                      ...|++++|...|++....  .|+..    .|..+-..+...         |+.++|...+++..+.  .|+     ...
T Consensus       116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~----tyn~lI~~~~~~---------g~~~~A~~l~~~M~~~G~~Pd-----~~t  177 (501)
T 4g26_A          116 VAKDDPEMAFDMVKQMKAFGIQPRLR----SYGPALFGFCRK---------GDADKAYEVDAHMVESEVVPE-----EPE  177 (501)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHT---------TCHHHHHHHHHHHHHTTCCCC-----HHH
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCccc----eehHHHHHHHHC---------CCHHHHHHHHHHHHhcCCCCC-----HHH
Confidence            6666666666666665543  33322    344444444444         6666666666666553  332     445


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          211 YLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       211 ~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      |..+-.++.+.|+.++|...+++.-+
T Consensus       178 y~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          178 LAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            66666666666666666666666543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.21  E-value=7.5e-05  Score=54.48  Aligned_cols=85  Identities=9%  Similarity=0.009  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhcCh-hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRG---KDALSSCTEALNINE-ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                      +..+.+++|+++.+..+.   ..++..++..++.+| ..-+.++.+|..+.++|+|++|+.+.+.+++..|++..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            578999999999998765   478999999999888 4688999999999999999999999999999999999988877


Q ss_pred             HHHHHHHhh
Q 043837          283 MRAEKALKM  291 (409)
Q Consensus       283 ~~~~~~~~~  291 (409)
                      ..+...+.+
T Consensus       119 ~~Ie~ki~k  127 (134)
T 3o48_A          119 SMVEDKIQK  127 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.14  E-value=4.3e-05  Score=56.51  Aligned_cols=84  Identities=10%  Similarity=0.014  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhcCh-hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRG---KDALSSCTEALNINE-ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                      +..+.+++|+++....+.   .+++..++..+..+| ..-+.++.+|..++++|+|++|+.+.+.+++..|++.++....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            678999999999998865   478999999999888 5678999999999999999999999999999999999988777


Q ss_pred             HHHHHHHh
Q 043837          283 MRAEKALK  290 (409)
Q Consensus       283 ~~~~~~~~  290 (409)
                      ..+...+.
T Consensus       118 ~~Ie~~i~  125 (144)
T 1y8m_A          118 SMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.03  E-value=0.00024  Score=52.95  Aligned_cols=115  Identities=10%  Similarity=0.099  Sum_probs=90.5

Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCH------HHHHHHHHHHHccCCCCcc----chHHHHHHHHHHHHHc
Q 043837          152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL------RVAVEDFKAALALDPNHTA----HNVHLYLGLCKVLVKL  221 (409)
Q Consensus       152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~A~~~~~~al~~~~~~~~----~~~~~~~~la~~~~~~  221 (409)
                      -+.|++.+   .|..........         |+.      +.-++.|++|+..-|-...    ....+|...|.. ...
T Consensus         7 ~~~p~~yd---~W~~yl~llE~~---------g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei   73 (161)
T 4h7y_A            7 MMMANNPE---DWLSLLLKLEKN---------SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI   73 (161)
T ss_dssp             ---CCSHH---HHHHHHHHHHHH---------TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH
T ss_pred             eeCCCCHH---HHHHHHHHHHHc---------CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh
Confidence            35677877   676666666665         776      7888999999987664321    134566666644 667


Q ss_pred             CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       222 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      ++.++|...|+.++.+....+.+|...|.....+|+...|.+.+.+++.+.|...+..
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            9999999999999998888899999999999999999999999999999999876643

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.87  E-value=0.00028  Score=52.53  Aligned_cols=112  Identities=13%  Similarity=0.042  Sum_probs=83.3

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHccCCCcHH-----HHHHHHHHHHHHHHHHHHhhHHhcCCHH
Q 043837          119 EDENNLEALLHRGRAYYYLADH------DVAQRHFQKGLRLDPEHSE-----LKKAYFALKNLLKKTKSAEDNVSKGKLR  187 (409)
Q Consensus       119 ~~p~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~p~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~  187 (409)
                      +.|++++.|..........|+.      ++-++.|++|+..-|....     ....|...+.. ..+         ++.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei---------~D~d   77 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI---------QEPD   77 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH---------HCGG
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh---------cCHH
Confidence            4677788887777777777777      7777888888876654321     12233333322 222         8999


Q ss_pred             HHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837          188 VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       188 ~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      +|...|+.++.+...    -+.+|...|..-..+|+...|.+.+.+++.+.|...+.
T Consensus        78 ~aR~vy~~a~~~hKk----FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           78 DARDYFQMARANCKK----FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             GCHHHHHHHHHHCTT----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHHHHHHHHHhHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            999999999998544    58899999999999999999999999999999876554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.78  E-value=0.0014  Score=48.46  Aligned_cols=73  Identities=16%  Similarity=0.153  Sum_probs=65.6

Q ss_pred             CCcHHHHHHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           87 PACSKAKLLKVKLLLAAKDY---ASAISETGYLLKEDEN-NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        87 p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      ..++.+.+++|.++....+.   .+++..++.++..+|. .-+.++.+|..++++|+|++|..+.+.+|+..|++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            56789999999999988754   5799999999999885 5678899999999999999999999999999999988

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.77  E-value=0.00062  Score=49.68  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CcHHHHHHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           88 ACSKAKLLKVKLLLAAKDY---ASAISETGYLLKEDEN-NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        88 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      -++.+.+.+|.++....+.   .+++..++.+++.+|. .-+.++.+|..++++|+|++|..+.+.+|+..|++..
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            4678899999999987654   5799999999998884 5778999999999999999999999999999999998

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=97.75  E-value=4e-05  Score=48.56  Aligned_cols=51  Identities=18%  Similarity=0.153  Sum_probs=40.4

Q ss_pred             hhhhhhhccccc---CCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 043837          295 KDWYKILGVSKT---ASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG  350 (409)
Q Consensus       295 ~~~~~~l~~~~~---~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~  350 (409)
                      .+.+.+|||++.   ++.++|+++|+++...+|||+.-..     -....|++|.+.|.
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~-----yl~~ki~~Ake~l~   57 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF-----YLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHHH
Confidence            456889999998   8999999999999999999985332     13445777777764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.75  E-value=0.00026  Score=54.00  Aligned_cols=92  Identities=15%  Similarity=0.185  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhh---CCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------C-
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVF---SPAC------SKAKLLKVKLLLAAKDYASAISETGYLLKED------E-  121 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p-  121 (409)
                      .++....++..+.|+.|+..... ++..   +|+.      ..++..+|.+++..++|..|...|+++|+..      + 
T Consensus        23 l~dqik~L~d~~LY~sA~~La~l-LlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSL-LLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHH-HHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45666777888888888888776 3333   3331      3478889999999999999999999987541      1 


Q ss_pred             ------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837          122 ------------------NNLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus       122 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                                        ...++.+.++.||..++++.+|+..++.+
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                              11267899999999999999999998764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.73  E-value=0.00028  Score=53.81  Aligned_cols=112  Identities=17%  Similarity=0.085  Sum_probs=81.8

Q ss_pred             HHHHHhhHHhcCCHHHHHHHHHHHHccCCCC-----ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------h--
Q 043837          173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNH-----TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN------E--  239 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p--  239 (409)
                      .......+++.+.|+.|+.....++.+..++     +.....++..+|.+++..++|..|...|+++|...      +  
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3444556677799999999999877654322     23356788999999999999999999999987541      1  


Q ss_pred             -----------------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837          240 -----------------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA  285 (409)
Q Consensus       240 -----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  285 (409)
                                       .+.++.+.++.||.+++++++|+..++..-. .-..+.+...|+++
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL  164 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence                             1136889999999999999999998864321 22335555555554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.40  E-value=0.033  Score=49.72  Aligned_cols=24  Identities=13%  Similarity=0.302  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHcCChHHHhHHHH
Q 043837           23 EAYFHRGSVLRQLCRVKARNSVAE   46 (409)
Q Consensus        23 ~~~~~la~~~~~~g~~~~A~~~~~   46 (409)
                      .+.+.+|.+|...|+.++-...+.
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~   43 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIK   43 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            466788888888888776544433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.26  E-value=0.016  Score=57.69  Aligned_cols=70  Identities=17%  Similarity=0.074  Sum_probs=49.3

Q ss_pred             HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837           64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  143 (409)
                      .+...+.+++|+...+.         +...   ....+..|++++|.+..+.     .++...|..+|..+...++++.|
T Consensus       638 ~l~~~~~~~~a~~~~~~---------~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A  700 (814)
T 3mkq_A          638 FLEGQEYYEEALNISPD---------QDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLA  700 (814)
T ss_dssp             HHHHTTCHHHHHHHCCC---------HHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCChHHheecCCC---------cchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHH
Confidence            34455666776655532         2222   3345678899999887653     35678888999999999999999


Q ss_pred             HHHHHHH
Q 043837          144 QRHFQKG  150 (409)
Q Consensus       144 ~~~~~~a  150 (409)
                      +.+|.++
T Consensus       701 ~~~y~~~  707 (814)
T 3mkq_A          701 IEAFTNA  707 (814)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999886

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.0095  Score=57.77  Aligned_cols=125  Identities=13%  Similarity=0.100  Sum_probs=79.1

Q ss_pred             ccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--hc-CChHHHHHHHHHHHc--------cCCCcHHHHHHHHHHHHH
Q 043837          103 AKD-YASAISETGYLLKEDENNLEALLHRGRAYY--YL-ADHDVAQRHFQKGLR--------LDPEHSELKKAYFALKNL  170 (409)
Q Consensus       103 ~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~-~~~~~A~~~~~~al~--------~~p~~~~~~~~~~~l~~~  170 (409)
                      .++ ++.|+..+++....+|.... ++..+.+..  .. .+--+|+..+.++++        +.+.+..........+.+
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            445 68899999999999997543 333333222  22 234467777777763        233333311122222222


Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA  234 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  234 (409)
                      +  ..+++-++++++++-|+.+.++++...|.    ....|..|+.||..+|+|+.|+-.++.+
T Consensus       340 L--~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs----eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 L--NIQTNFLLNRGDYELALGVSNTSTELALD----SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             H--HHHHHHHHHTTCHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             H--HHHHHHHhccCcHHHHHHHHHHHHhcCch----hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            2  23466666778888888888888888888    6778888888888888888887666544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.15  E-value=0.0098  Score=49.33  Aligned_cols=60  Identities=13%  Similarity=0.059  Sum_probs=41.2

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      +++.++.++|++.+...++.+|.+......+...++-.|+|+.|.+.++.+.+++|+...
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            445566677777777777777777776667777777777777777777777777766554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.06  E-value=0.062  Score=40.86  Aligned_cols=95  Identities=21%  Similarity=0.194  Sum_probs=77.0

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh--h---------------CC
Q 043837           59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK--E---------------DE  121 (409)
Q Consensus        59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~---------------~p  121 (409)
                      .-..+.++-.|+|..|+-++..      -+...+.+..+.||..+++|..|+.++++.++  .               +|
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~  110 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP  110 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT
T ss_pred             hhhhhhhhhcchHhHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc
Confidence            4566778888999999887754      46678888899999999999999999999983  2               23


Q ss_pred             CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837          122 NNLE-ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus       122 ~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      .+.+ .+..+|.++...|+.++|+.++......+|--..
T Consensus       111 ~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          111 GDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             TCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence            3444 3568899999999999999999999988876544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.023  Score=55.09  Aligned_cols=61  Identities=15%  Similarity=0.105  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                      ...+...+..+...++++-|+.+.++++...|.....|+.|+.+|..+++|+.|+-.++.+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3456666778888899999999999999999999999999999999999999999888776

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.95  E-value=0.031  Score=49.86  Aligned_cols=176  Identities=10%  Similarity=-0.073  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH-----HHHHHHHHh-cCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEAL-----LHRGRAYYY-LADHDVAQRHFQKGLRLDPEHSELKKAY  164 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~  164 (409)
                      .+.+.+|.+|...|++++-.+++......-+..+.+.     ..+-..+.. -+..+.-++.+..+++...+...   .|
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r---~f   96 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR---TF   96 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC---HH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH---HH
Confidence            4556677777777777777766666544433322221     111122222 12333444444554443222111   11


Q ss_pred             HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC----
Q 043837          165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN----  238 (409)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----  238 (409)
                      ...   ......+..+++.|+|.+|...+.+.++...  ++.....+++..-..+|..++++.++...+.++....    
T Consensus        97 lr~---~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~  173 (394)
T 3txn_A           97 LRQ---SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY  173 (394)
T ss_dssp             HHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence            100   0111234445555999999999998887432  3344477888899999999999999999999987542    


Q ss_pred             --hh-cHHHHHHHHHHHH-hccCHHHHHHHHHHHHhhC
Q 043837          239 --EE-LIEALVQRGEAKL-LTEDWEGAVEDLKSAAQQS  272 (409)
Q Consensus       239 --p~-~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~  272 (409)
                        |. .+.....-|..+. ..++|..|..+|-++++-.
T Consensus       174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence              21 2455566788899 8999999999999887543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.94  E-value=0.081  Score=40.24  Aligned_cols=189  Identities=13%  Similarity=0.100  Sum_probs=118.4

Q ss_pred             HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837           65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus        65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      .++-.+|+.++-+-.    -+-|..++....++.++.-.|+|..|+-.+.+     -+...+.+..+.||..++++..|+
T Consensus        12 s~kY~dYdt~~fLsa----~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~   82 (242)
T 3kae_A           12 SIRYRDYETAIFLAA----CLLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAI   82 (242)
T ss_dssp             HHHTTCHHHHHHHHH----HHC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhcccccHHHHHHH----HHccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHH
Confidence            344466766654432    22455567788899999999999999877653     345778888999999999999999


Q ss_pred             HHHHHHHc--c---------------CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccch
Q 043837          145 RHFQKGLR--L---------------DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN  207 (409)
Q Consensus       145 ~~~~~al~--~---------------~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  207 (409)
                      .+++..+.  .               +|.+.+.  .+..++.++...         |+-++|+.++.......|-.+...
T Consensus        83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf--Fy~l~a~lltq~---------g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEF--FESLLGDLCTLS---------GYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH--HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHhcccccCcccccccceeeeccchHHH--HHHHHHHHHHHh---------cCHHHhhhHhhhhcCCccccchHH
Confidence            99999993  2               2334442  456677777777         999999999999888776522100


Q ss_pred             HHHHHH-------HHHHHHHcCCh-------hHHH--------HHHHHHHhcChhcHH-HHHHHHHHHHhccCHHHHHHH
Q 043837          208 VHLYLG-------LCKVLVKLGRG-------KDAL--------SSCTEALNINEELIE-ALVQRGEAKLLTEDWEGAVED  264 (409)
Q Consensus       208 ~~~~~~-------la~~~~~~~~~-------~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~  264 (409)
                      ..++.+       .-.+. ..|+-       ....        ...++-.+.-|.... .....|..|+.+|-.++...+
T Consensus       152 nliyeN~vp~~~d~~~i~-~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~l  230 (242)
T 3kae_A          152 NLLLENKVPQKRDKENVR-QTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKAC  230 (242)
T ss_dssp             HHHHTTCCCCCC------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhhcCCCcccchHHHH-hhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHH
Confidence            001100       00000 00000       0000        112222223343322 234567889999999999999


Q ss_pred             HHHHHhhCCC
Q 043837          265 LKSAAQQSPQ  274 (409)
Q Consensus       265 ~~~al~~~p~  274 (409)
                      |...-+.+|.
T Consensus       231 f~~lR~kDP~  240 (242)
T 3kae_A          231 FELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHSTT
T ss_pred             HHHHHhcCCC
Confidence            9999988886

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.93  E-value=0.18  Score=50.03  Aligned_cols=97  Identities=13%  Similarity=0.135  Sum_probs=60.0

Q ss_pred             HhCCCchHHHH-HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837           66 YDSGEYTKPLE-YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ  144 (409)
Q Consensus        66 ~~~~~~~~A~~-~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  144 (409)
                      +..+++++|.. ++..     -| +.......+..+...+.+++|+...+        ++...   -......|++++|.
T Consensus       610 ~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~  672 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLAR  672 (814)
T ss_dssp             HHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHH
Confidence            34567777766 4311     11 01223566677778888888876553        22222   23456788899888


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Q 043837          145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA  196 (409)
Q Consensus       145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  196 (409)
                      +..+.     .++..   .|..++......         ++++.|+.+|.++
T Consensus       673 ~~~~~-----~~~~~---~W~~la~~al~~---------~~~~~A~~~y~~~  707 (814)
T 3mkq_A          673 DLLTD-----ESAEM---KWRALGDASLQR---------FNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTT-----CCCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHH
T ss_pred             HHHHh-----hCcHh---HHHHHHHHHHHc---------CCHHHHHHHHHHc
Confidence            87543     23444   677777776666         8888888888875

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.48  Score=43.29  Aligned_cols=261  Identities=13%  Similarity=0.018  Sum_probs=140.9

Q ss_pred             ChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH---HHH-HHHHHHHHHHHHhC-CCc
Q 043837            3 HYSEALDDLNTAIEA------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ---LLQ-AQSTFDSALKLYDS-GEY   71 (409)
Q Consensus         3 ~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~-~~~~~~~a~~~~~~-~~~   71 (409)
                      ++++|++.+...-+.      -+....+...+..++...++++.....+......   ... .......+..++.. ...
T Consensus        31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~  110 (445)
T 4b4t_P           31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSL  110 (445)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Confidence            456777766443332      2335677788888899999998765443322110   111 11222233333321 111


Q ss_pred             hH--HHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHh
Q 043837           72 TK--PLEYIDKVVLVFSPA-------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDE--N----NLEALLHRGRAYYY  136 (409)
Q Consensus        72 ~~--A~~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~l~~~~~~  136 (409)
                      +.  -+..... +......       .......++.++...|++.+|...+..+..-.-  .    -.+.+.....+|..
T Consensus       111 d~~~~~~~i~~-l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~  189 (445)
T 4b4t_P          111 DLNTRISVIET-IRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL  189 (445)
T ss_dssp             HHHHHHHHHHC-CSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            11  1111111 0001111       245567889999999999999999998864211  1    24577888999999


Q ss_pred             cCChHHHHHHHHHHHc---cCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHH
Q 043837          137 LADHDVAQRHFQKGLR---LDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHL  210 (409)
Q Consensus       137 ~~~~~~A~~~~~~al~---~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~  210 (409)
                      .+++.+|...++++..   ..+.++. ....+...+.++...         ++|.+|..+|..++.....  ++.....+
T Consensus       190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e---------~~y~~a~~~y~e~~~~~~~~~d~~~~~~~  260 (445)
T 4b4t_P          190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHK---------REYLEVAQYLQEIYQTDAIKSDEAKWKPV  260 (445)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH---------CCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence            9999999999998742   2333333 223444455555555         9999999999999874321  11101112


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhc-ChhcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhhCC
Q 043837          211 YLGLCKVLVKLGRGKDALSSCTEALNI-NEELIEALVQRGEAKLL--TEDWEGAVEDLKSAAQQSP  273 (409)
Q Consensus       211 ~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p  273 (409)
                      +.....+..-......--....+.... .-.....+..+..++..  +.+|+...+.|...+.-+|
T Consensus       261 L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~  326 (445)
T 4b4t_P          261 LSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD  326 (445)
T ss_dssp             HHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence            222222222222111111122222211 11234566667777654  4678888888877666554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.38  E-value=0.042  Score=45.62  Aligned_cols=63  Identities=17%  Similarity=0.130  Sum_probs=57.2

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 043837           62 ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE  125 (409)
Q Consensus        62 a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  125 (409)
                      +..+++.++.++|+..+.. .++.+|.+......+...++-.|+|+.|...++.+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~-~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIE-AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHH-HHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHH-HHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            3457788999999999988 88999999999999999999999999999999999999998654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.35  E-value=0.091  Score=47.15  Aligned_cols=96  Identities=13%  Similarity=0.043  Sum_probs=76.5

Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccCCCCc--------c----------chHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALDPNHT--------A----------HNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      ..+......++.+.|+..+.+++.+.....        .          ....+...++.++...|++.+|+..+..++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334444556899999999999998753321        0          0123444677888899999999999999999


Q ss_pred             cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      .+|-+..++..+-.++...|+..+|+..|+++-+
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988754

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.33  Score=44.59  Aligned_cols=198  Identities=16%  Similarity=0.063  Sum_probs=92.8

Q ss_pred             HHHhCCCchHHHHHHHHHH----------HhhCCCcHHHHHHHHHHHHHccCHHHHH----------HHHHHHHh-----
Q 043837           64 KLYDSGEYTKPLEYIDKVV----------LVFSPACSKAKLLKVKLLLAAKDYASAI----------SETGYLLK-----  118 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~----------~~~~p~~~~~~~~~a~~~~~~~~~~~A~----------~~~~~al~-----  118 (409)
                      .++..+++++|..+-...+          ..+++-.+.+|+..+.++...|+.....          ..+..+++     
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3556788888887765422          1224456778888888888777765432          12222222     


Q ss_pred             hCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Q 043837          119 EDEN-NLEALLHRGRAYYYLADHDVAQRHFQKGLRLD--PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKA  195 (409)
Q Consensus       119 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~  195 (409)
                      .++. ....+..+-+.|...+.+++|.....++.-..  ..+......++.+|.+....         ++|.+|.+++..
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q---------~~Y~eA~~~L~~  295 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQ---------LDYSTANEYIIA  295 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHH
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHH
Confidence            2332 24467788999999999999999999985322  23445556777788888777         999999999999


Q ss_pred             HHccCCCCccc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---cHHHHHHHHHHHHhccC---HHHHHHHHH
Q 043837          196 ALALDPNHTAH---NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---LIEALVQRGEAKLLTED---WEGAVEDLK  266 (409)
Q Consensus       196 al~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~---~~~A~~~~~  266 (409)
                      |+...|.+...   ...++-.+..+-+-+|+..+-. .+.     .+.   ....|..++.++ +.|+   +..+++-++
T Consensus       296 A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~-lf~-----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~  368 (523)
T 4b4t_S          296 AIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELS-FFH-----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK  368 (523)
T ss_dssp             HTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHH-HHT-----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH
T ss_pred             HHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChH-Hhh-----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc
Confidence            99998864321   1233333444444467765421 111     121   134466666665 3454   556666666


Q ss_pred             HHHhhCCCcHH
Q 043837          267 SAAQQSPQDMN  277 (409)
Q Consensus       267 ~al~~~p~~~~  277 (409)
                      ..+..+....-
T Consensus       369 ~~F~~Dgty~L  379 (523)
T 4b4t_S          369 QLLLKDDTYQL  379 (523)
T ss_dssp             HHHHHTTCTHH
T ss_pred             ceeccCChhHH
Confidence            66666655433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.75  E-value=0.2  Score=44.87  Aligned_cols=61  Identities=18%  Similarity=0.091  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      +...++..+...|++.+|+..+..++..+|-+..++..+-.++...|+..+|+..|+++..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445677788899999999999999999999999999999999999999999998887543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.53  E-value=2.5  Score=43.80  Aligned_cols=189  Identities=13%  Similarity=0.004  Sum_probs=112.2

Q ss_pred             HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---C--------------------
Q 043837           64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE---D--------------------  120 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~--------------------  120 (409)
                      .+...+.++-+..+     ....|.++...+.+|.+++..|++++|..+|+++-.-   +                    
T Consensus       821 ~l~~~~~~~~~~~l-----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~  895 (1139)
T 4fhn_B          821 KLFLFKQYNACMQL-----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ  895 (1139)
T ss_dssp             HHHHHSCTTHHHHH-----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred             HHHHhhhHHHHHHH-----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence            34555666555443     3446777888899999999999999999999887321   0                    


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC-CcHHHH-HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837          121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP-EHSELK-KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA  198 (409)
Q Consensus       121 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  198 (409)
                      ...+..|+.+..++...+.++.+++..+.|+...+ ++.... ..|.++-.....+         ++|++|...+...-.
T Consensus       896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l---------~~ye~Ay~aL~~~pd  966 (1139)
T 4fhn_B          896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA---------GKFDAAHVALMVLST  966 (1139)
T ss_dssp             CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH---------CCSGGGGHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh---------CCHHHHHHHHHhCCC
Confidence            11234566778888899999999999999998654 333321 2455555555555         999999877754322


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCChhH------------HHHHHHH-HHhc-Chhc-HHHHHHHHHHHHhccCHHHH-H
Q 043837          199 LDPNHTAHNVHLYLGLCKVLVKLGRGKD------------ALSSCTE-ALNI-NEEL-IEALVQRGEAKLLTEDWEGA-V  262 (409)
Q Consensus       199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~------------A~~~~~~-al~~-~p~~-~~~~~~la~~~~~~~~~~~A-~  262 (409)
                      ..-     ...++..+-..++..+..+.            ....+.. |-.. ++.+ +..|..|=-.++..|+|..| .
T Consensus       967 ~~~-----r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B          967 TPL-----KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp             SSS-----CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHH-----HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence            111     23455555555555544332            2222211 1111 1222 22333344445667777554 4


Q ss_pred             HHHHHHHhh
Q 043837          263 EDLKSAAQQ  271 (409)
Q Consensus       263 ~~~~~al~~  271 (409)
                      ..|+.+.++
T Consensus      1042 vmYe~~~RL 1050 (1139)
T 4fhn_B         1042 IIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            566777665

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.40  E-value=0.13  Score=47.59  Aligned_cols=79  Identities=11%  Similarity=-0.072  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      .+..+|.+......+..|..+|.+|+.+.|++...++.+|.+....++.-+|+-+|-+++......+.   +..++...+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~---a~~nL~~~f  230 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA---ASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH---HHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh---HHHHHHHHH
Confidence            45667888888888999999999999999999999999999999999999999999999998766766   777777666


Q ss_pred             HH
Q 043837          172 KK  173 (409)
Q Consensus       172 ~~  173 (409)
                      ..
T Consensus       231 ~~  232 (497)
T 1ya0_A          231 SK  232 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.082  Score=48.16  Aligned_cols=106  Identities=13%  Similarity=0.057  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC-
Q 043837          123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP-  201 (409)
Q Consensus       123 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-  201 (409)
                      ...++..+|..|...|+++.|.+.|.++.............+..+..+....         ++|..+..++.++..+.. 
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~---------~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFY---------NDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhhhc
Confidence            3446777888888888888888888887765444333333555555555555         888888888887755422 


Q ss_pred             -CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          202 -NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       202 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                       .++.....+....|.++...++|.+|...|-.++..
T Consensus       201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence             222223345555666777778888888877776653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.35  E-value=0.93  Score=46.92  Aligned_cols=151  Identities=15%  Similarity=0.021  Sum_probs=96.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCc-----H-H--------
Q 043837           95 LKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD-PEH-----S-E--------  159 (409)
Q Consensus        95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~-----~-~--------  159 (409)
                      .+...+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++-..- .+.     . .        
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34555666677665543    445667788888999999999999999999999874321 110     0 0        


Q ss_pred             -----HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC-ccchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837          160 -----LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH-TAHNVHLYLGLCKVLVKLGRGKDALSSCTE  233 (409)
Q Consensus       160 -----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  233 (409)
                           ....|..+..++...         +.++.+++....|++..+.+ +.....+|.++=..++..++|++|...+..
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~---------~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEE---------SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHT---------SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence                 011333444444433         88999999999999876543 222344778888889999999999877754


Q ss_pred             HHhcChhcHHHHHHHHHHHHhccCHH
Q 043837          234 ALNINEELIEALVQRGEAKLLTEDWE  259 (409)
Q Consensus       234 al~~~p~~~~~~~~la~~~~~~~~~~  259 (409)
                      .-.. ......+..+-...++.+..+
T Consensus       964 ~pd~-~~r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          964 LSTT-PLKKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHS-SSCHHHHHHHHHHHHHHCCHH
T ss_pred             CCCH-HHHHHHHHHHHHHHHhCCChh
Confidence            3211 122344444555555555443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.24  E-value=0.13  Score=47.39  Aligned_cols=72  Identities=14%  Similarity=0.087  Sum_probs=38.3

Q ss_pred             HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHH
Q 043837          177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAK  252 (409)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  252 (409)
                      |..+.-...+..|..+|.+|+.+.|+    +...++.+|.+....++.-+|+-+|.+++......+.+..++...+
T Consensus       159 GDL~RY~~~~~~A~~~Y~~A~~~~P~----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          159 GDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCC----CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            33333334455555555555555555    4445555555555555555555555555554444455555554443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.82  Score=35.42  Aligned_cols=43  Identities=16%  Similarity=-0.038  Sum_probs=28.1

Q ss_pred             CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 043837           68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYL  116 (409)
Q Consensus        68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  116 (409)
                      .|+++.|.+..+. +     ++...|..+|...+..|+++-|..+|.++
T Consensus        18 lg~l~~A~e~a~~-l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           18 YGNLDAALDEAKK-L-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             TTCHHHHHHHHHH-H-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHH-h-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3666666666544 1     45666777777777777777777777665

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.85  Score=35.33  Aligned_cols=54  Identities=13%  Similarity=0.059  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837           89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG  150 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  150 (409)
                      ++...+.+|   +..|+++.|.+..+.+     ++...|..+|......|+++-|..+|.++
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            444555444   5789999999887765     56788999999999999999999999885

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.13  E-value=1.9  Score=39.32  Aligned_cols=104  Identities=14%  Similarity=-0.028  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc---
Q 043837          125 EALLHRGRAYYYLADHDVAQRHFQKGLRL---DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA---  198 (409)
Q Consensus       125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---  198 (409)
                      .....|+.+|...|++.+|...+.....-   .-+.......+.....++..         .+++..|...++++..   
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~---------~~d~~~a~~~~~ki~~~~~  208 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL---------KGDYSQATVLSRKILKKTF  208 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---------HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHhhc
Confidence            34578999999999999999999887531   11122222344444444444         4999999999998743   


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      -.+.++.....++...|..+...++|.+|-.+|.+++..
T Consensus       209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            233334345677888999999999999999999998764

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.89  E-value=2.7  Score=39.97  Aligned_cols=50  Identities=10%  Similarity=0.032  Sum_probs=37.7

Q ss_pred             HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 043837           66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED  120 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  120 (409)
                      .+.+++..-+.++..     .|.+....+..+......|+..+|.....++....
T Consensus        83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~  132 (618)
T 1qsa_A           83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (618)
T ss_dssp             HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence            347788877776543     47888888888999999999888887777765443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.23  Score=45.24  Aligned_cols=102  Identities=12%  Similarity=0.046  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC----
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN----  238 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----  238 (409)
                      ++..++..+...         |++++|++.|.++......... ...++..+..++...++|..+...+.++..+.    
T Consensus       133 ~~~~la~~~~~~---------Gd~~~A~~~~~~~~~~~~~~~~-kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~  202 (429)
T 4b4t_R          133 AWINLGEYYAQI---------GDKDNAEKTLGKSLSKAISTGA-KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG  202 (429)
T ss_dssp             CCHHHHHHHHHH---------CCCTTHHHHHHHHHHHHTCCCS-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence            566777777777         9999999999999886654433 77889999999999999999999999986541    


Q ss_pred             -hh-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          239 -EE-LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       239 -p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                       |. ........|.++...++|..|...|-.++.....
T Consensus       203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence             11 1244556788888999999999999888776543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.40  E-value=3.6  Score=39.17  Aligned_cols=127  Identities=10%  Similarity=-0.097  Sum_probs=79.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837          130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV  208 (409)
Q Consensus       130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  208 (409)
                      ++.......+.+.|...+.......+-+.. ....+..+         +..++..+...++...+.++.....+    ..
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~i---------a~~~~~~~~~~~~~~~~~~~~~~~~~----~~  286 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIV---------AWRLMGNDVTDEQAKWRDDAIMRSQS----TS  286 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH---------HHTSCSTTCCHHHHHHHHHHHHTCCC----HH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHH---------HHHHHHcCCChHHHHHHHhccccCCC----hH
Confidence            344444455777787777765433222222 11111111         22233335356777777776654443    22


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                      . ..-++...+..++++.|..++...-..........+.+|.++..+|+.++|...|+++..
T Consensus       287 ~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          287 L-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             H-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            2 223333445679999999999876554446788899999999999999999999999876

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.22  E-value=0.17  Score=46.48  Aligned_cols=134  Identities=10%  Similarity=0.007  Sum_probs=62.8

Q ss_pred             HHHhcCChHHHHHHHHHHHc---cCCC-----cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHH----------HHHHHH
Q 043837          133 AYYYLADHDVAQRHFQKGLR---LDPE-----HSELKKAYFALKNLLKKTKSAEDNVSKGKLRV----------AVEDFK  194 (409)
Q Consensus       133 ~~~~~~~~~~A~~~~~~al~---~~p~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------A~~~~~  194 (409)
                      .++..+++++|.++....+.   +..-     +.-..++|+.++.++...         ++...          -...+.
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~---------~~~~~~~~~~~~~~~ir~~Ll  215 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETL---------ARSSEEINSDNQNIILRSTMM  215 (523)
T ss_dssp             -------------------------------------------------------------------CHHHHHHHHTHHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHh---------cccccccccccchhhHHHHHH
Confidence            44566788888877765541   1111     111223566666655554         43332          122333


Q ss_pred             HHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-----hhcHHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837          195 AALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-----EELIEALVQRGEAKLLTEDWEGAVEDLKS  267 (409)
Q Consensus       195 ~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~  267 (409)
                      .+++...  .+....+.++..+-+.|+..+.+++|.....++.-..     +.....++.+|.++.-+++|.+|.+++..
T Consensus       216 ~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~  295 (523)
T 4b4t_S          216 KFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA  295 (523)
T ss_dssp             HHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3333211  1222267788889999999999999999999985221     12256678899999999999999999999


Q ss_pred             HHhhCCCc
Q 043837          268 AAQQSPQD  275 (409)
Q Consensus       268 al~~~p~~  275 (409)
                      |+...|.+
T Consensus       296 A~rkap~~  303 (523)
T 4b4t_S          296 AIRKAPHN  303 (523)
T ss_dssp             HTSSCSCS
T ss_pred             HHHhCCcc
Confidence            99988764

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=93.53  E-value=0.055  Score=47.77  Aligned_cols=26  Identities=8%  Similarity=0.309  Sum_probs=15.9

Q ss_pred             hhhhhhcccccCCHHHHHHHHHHHHhcc
Q 043837          296 DWYKILGVSKTASISEIKRAYKKLALQW  323 (409)
Q Consensus       296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~  323 (409)
                      .|+..+.  ...+.+++...++.+...+
T Consensus       220 ~W~~~~~--~~vt~~~l~~i~~~il~~y  245 (358)
T 2pk2_A          220 HWWEYVD--ATVTLELLDELTHEFLQIL  245 (358)
T ss_dssp             CTTTTSC--SSCCHHHHHHHHHHHHHHT
T ss_pred             chHHHHh--ccCCHHHHHHHHHHHHHHH
Confidence            3544432  2346778888888776655

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=92.67  E-value=0.046  Score=48.24  Aligned_cols=19  Identities=16%  Similarity=-0.020  Sum_probs=11.9

Q ss_pred             hHHHHHHHHHHHHHHHhcC
Q 043837          332 REEAENKFREIAAAYEVLG  350 (409)
Q Consensus       332 ~~~a~~~~~~i~~ay~~l~  350 (409)
                      ....+...++|...|+.-.
T Consensus       231 ~~~l~~i~~~il~~y~~~~  249 (358)
T 2pk2_A          231 LELLDELTHEFLQILEKTP  249 (358)
T ss_dssp             HHHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHHHHHHHHHHHhCc
Confidence            3566666777777665544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.64  E-value=1.9  Score=43.39  Aligned_cols=88  Identities=2%  Similarity=-0.184  Sum_probs=42.9

Q ss_pred             HHHhCCCchHHHHHHHHHH---HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcC
Q 043837           64 KLYDSGEYTKPLEYIDKVV---LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DENNLEALLHRGRAYYYLA  138 (409)
Q Consensus        64 ~~~~~~~~~~A~~~~~~~~---~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~  138 (409)
                      .+.+.|+.++|..++.+..   ......+...|..+...+.+.|+.++|.+.|++..+.  .| +...|..+-.++.+.|
T Consensus       136 glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK~G  214 (1134)
T 3spa_A          136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQD  214 (1134)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCC
Confidence            3445555555555554311   0111223455555555555555555555555555443  23 3444554444555555


Q ss_pred             Ch-HHHHHHHHHHHc
Q 043837          139 DH-DVAQRHFQKGLR  152 (409)
Q Consensus       139 ~~-~~A~~~~~~al~  152 (409)
                      +. ++|...+++...
T Consensus       215 ~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          215 QDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH
Confidence            43 445555555544

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=92.10  E-value=5.4  Score=34.45  Aligned_cols=32  Identities=13%  Similarity=0.063  Sum_probs=20.6

Q ss_pred             hhcHHHHHHHHH-HHHhccCHHHHHHHHHHHHh
Q 043837          239 EELIEALVQRGE-AKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       239 p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~  270 (409)
                      |.....+..++. .|..+++...|...+....+
T Consensus       183 ~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          183 SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            455555555554 46778888888876555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=91.95  E-value=2.3  Score=42.73  Aligned_cols=99  Identities=8%  Similarity=-0.113  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc--CCCcHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLK-----EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL--DPEHSELKK  162 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~  162 (409)
                      ...+..+...|.+.|+.++|...+....+     ..| +...|..+-..|.+.|+.++|.+.|++....  .|+..    
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv----  201 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL----  201 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH----
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH----
Confidence            45688888899999999999999976543     234 5778889999999999999999999998763  46544    


Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCC-HHHHHHHHHHHHcc--CCC
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGK-LRVAVEDFKAALAL--DPN  202 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~--~~~  202 (409)
                      .|..+-..+...         |+ .++|..++++..+.  .|+
T Consensus       202 TYntLI~glcK~---------G~~~e~A~~Ll~EM~~kG~~PD  235 (1134)
T 3spa_A          202 SYAAALQCMGRQ---------DQDAGTIERCLEQMSQEGLKLQ  235 (1134)
T ss_dssp             HHHHHHHHHHHH---------TCCHHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCCCC
Confidence            466666666555         76 47888899888774  454

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.72  E-value=13  Score=32.13  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=23.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837          122 NNLEALLHRGRAYYYLADHDVAQRHFQ  148 (409)
Q Consensus       122 ~~~~~~~~l~~~~~~~~~~~~A~~~~~  148 (409)
                      .+++.+..+|..|+..+++.+|..+|-
T Consensus       134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          134 GDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            478888999999999999998888873

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.66  E-value=18  Score=36.61  Aligned_cols=53  Identities=19%  Similarity=0.114  Sum_probs=42.1

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837           96 KVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR  152 (409)
Q Consensus        96 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  152 (409)
                      +...+...+.++-|    ...+..-|.++..-+.+|.++...|++++|..+|++|-.
T Consensus       816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~  868 (950)
T 4gq2_M          816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL  868 (950)
T ss_dssp             HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred             HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence            45556667777654    345667788888889999999999999999999998754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=85.58  E-value=32  Score=34.50  Aligned_cols=258  Identities=14%  Similarity=0.067  Sum_probs=117.5

Q ss_pred             CChHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH---------HH--HHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEAD-PTL----SEAYFHRGSVLRQLCRVKARNSVAEKELSQLL---------QA--QSTFDSALKL   65 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---------~~--~~~~~~a~~~   65 (409)
                      |+.++++..+.+.+... .++    ..+.+.+|.++...+  .++...+...+....         ..  ...+..++.+
T Consensus       388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~  465 (963)
T 4ady_A          388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA  465 (963)
T ss_dssp             SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred             CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence            45566666666655421 122    245555666655444  356665655554322         11  1223333333


Q ss_pred             HhCCCchHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837           66 YDSGEYTKPLEYIDKVVLVFSPACS--KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA  143 (409)
Q Consensus        66 ~~~~~~~~A~~~~~~~~~~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  143 (409)
                      ...+ -++++..+.. ++..+....  .+-+.+|.++.-.++-+-....+..+.+...+...-...+|..+...|+.+.+
T Consensus       466 ~GS~-~eev~e~L~~-~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~  543 (963)
T 4ady_A          466 MGSA-NIEVYEALKE-VLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA  543 (963)
T ss_dssp             TTCC-CHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred             cCCC-CHHHHHHHHH-HHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence            3333 2456666666 333222111  34455666777777765555555555543332222234555556677777766


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC
Q 043837          144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR  223 (409)
Q Consensus       144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~  223 (409)
                      -..++.... +++...-..+...++..+         ...|+.......+..+.. ++++   ...-..-+|......++
T Consensus       544 ~~li~~L~~-~~dp~vRygaa~alglAy---------aGTGn~~aIq~LL~~~~~-d~~d---~VRraAViaLGlI~~g~  609 (963)
T 4ady_A          544 DDLITKMLA-SDESLLRYGGAFTIALAY---------AGTGNNSAVKRLLHVAVS-DSND---DVRRAAVIALGFVLLRD  609 (963)
T ss_dssp             HHHHHHHHH-CSCHHHHHHHHHHHHHHT---------TTSCCHHHHHHHHHHHHH-CSCH---HHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHh-CCCHHHHHHHHHHHHHHh---------cCCCCHHHHHHHHHHhcc-CCcH---HHHHHHHHHHHhhccCC
Confidence            666555443 332211111122222222         333775443345555554 3321   22223333444444566


Q ss_pred             hhHHHHHHHHHHhcChhcHHHHHHHHHHHH--hccC-HHHHHHHHHHHHhhCCCcHHHHHH
Q 043837          224 GKDALSSCTEALNINEELIEALVQRGEAKL--LTED-WEGAVEDLKSAAQQSPQDMNIREA  281 (409)
Q Consensus       224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~-~~~A~~~~~~al~~~p~~~~~~~~  281 (409)
                      .+.+...+.....  ..++.+.+..+.++-  ..|+ ..+|+..+.+... ++ +..++..
T Consensus       610 ~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~-d~~Vrq~  666 (963)
T 4ady_A          610 YTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DP-VDFVRQA  666 (963)
T ss_dssp             CSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CS-SHHHHHH
T ss_pred             HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CC-CHHHHHH
Confidence            5544444433322  123444433333322  2222 2677777777653 33 3444443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.24  E-value=27  Score=29.84  Aligned_cols=27  Identities=15%  Similarity=-0.135  Sum_probs=24.6

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837          122 NNLEALLHRGRAYYYLADHDVAQRHFQ  148 (409)
Q Consensus       122 ~~~~~~~~l~~~~~~~~~~~~A~~~~~  148 (409)
                      .++..+..+|..|+..+++.+|..+|-
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            478899999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	6e-21
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-19
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-18
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-18
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-18
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	3e-16
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-14
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-11
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-10
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.003
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	7e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	6e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.001
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.001
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	8e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.002
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.002

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.7 bits (209), Expect = 6e-21
 Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 5/78 (6%)

Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN-----REEAENKFREI 342
           AL+ + +KDWY ILG   +A++S++K+ Y+KL L +HPDK   +      EE   KF EI
Sbjct: 9   ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68

Query: 343 AAAYEVLGDDDKRARYDR 360
             A+++LG+++ + +YD 
Sbjct: 69  DQAWKILGNEETKKKYDL 86

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.6 bits (196), Expect = 4e-19
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 263 EDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQ 322
           E LK       ++ NIR  L      L   +    +K +G++   +  ++K+ Y+K  L 
Sbjct: 3   EKLKILEWIEGKERNIRALLSTMHTVLWAGE--TKWKPVGMADLVTPEQVKKVYRKAVLV 60

Query: 323 WHPDKNVDN--REEAENKFREIAAAYEVLGDDDKRARY 358
            HPDK       + A+  F E+  A+    +  ++  Y
Sbjct: 61  VHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 98

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 77.7 bits (191), Expect = 1e-18
 Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)

Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
           ++D+Y+ILGVSKTA   EI++AYK+LA+++HPD+N  + +EAE KF+EI  AYEVL D  
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQ 60

Query: 354 KRARYDR 360
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 2e-18
 Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 7/80 (8%)

Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
           KD+Y+ LG+++ AS  EIKRAY++ AL++HPDKN +    AE KF+EIA AY+VL D  K
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRK 60

Query: 355 RARYDR-GEDIEETGMGGGG 373
           R  +DR GE+    G+ G G
Sbjct: 61  REIFDRYGEE----GLKGSG 76

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 286 EKALKMSKRKDWYKILGVSKTASIS--EIKRAYKKLALQWHPDKNVDNREEAENKFREIA 343
           ++ L  + ++   ++L + +        +++AYK+ +L  HPDK   +        +E+ 
Sbjct: 2   DRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH-----ALMQELN 56

Query: 344 AAYEVLGDDDKRARYDRG 361
           + +     +    R + G
Sbjct: 57  SLWGTFKTEVYNLRMNLG 74

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 3e-16
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 290 KMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVL 349
           + S  K+   ++  +     SE K+  ++L L+WHPDKN +N + A   F+ +      L
Sbjct: 11  RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

Query: 350 GDDDKRARYDRGED 363
              +K+A  D+  D
Sbjct: 71  ---EKQAFLDQNAD 81

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 69.7 bits (170), Expect = 1e-15
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 296 DWYKILGVSKTASIS--EIKRAYKKLALQWHPDKNVDNREEAE----NKFREIAAAYEVL 349
           D++ + G+     +    +   ++ L  Q+HPDK     +  +     +   I  A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 350 GDDDKRARYD 359
                RA Y 
Sbjct: 62  RHPLMRAEYL 71

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (185), Expect = 1e-15
 Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 17/236 (7%)

Query: 55  AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETG 114
           A +  +        GE    + + +K  +   P    A +    +L  A+ +  A++   
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKA-VTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 115 YLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174
             L    N+     +    YY     D+A   +++ + L P   +   AY  L N LK+ 
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKE- 283

Query: 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234
                   KG +  A + +  AL L P H     +    L  +  + G  ++A+    +A
Sbjct: 284 --------KGSVAEAEDCYNTALRLCPTHADSLNN----LANIKREQGNIEEAVRLYRKA 331

Query: 235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290
           L +  E   A              + A+   K A + SP   +    +    K ++
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 8e-14
 Identities = 51/327 (15%), Positives = 107/327 (32%), Gaps = 40/327 (12%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            +    +      AI+ +P L+EAY + G+V ++  +++         L         + 
Sbjct: 46  CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
           +      +    +         L ++P     +     LL A      A +     ++  
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
            N   A  + G  +    +  +A  HF+K + LDP   +       +    +    A   
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 181 VSK----------------------GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL 218
             +                      G + +A++ ++ A+ L P+        Y  L   L
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH----FPDAYCNLANAL 281

Query: 219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-- 276
            + G   +A      AL +     ++L      K    + E AV   + A +  P+    
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

Query: 277 ------------NIREALMRAEKALKM 291
                        ++EALM  ++A+++
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 7e-13
 Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 13/180 (7%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            + +  A+     A+   P  +  + +   V  +   +      A     + ++ Q  F 
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL----AIDTYRRAIELQPHFP 271

Query: 61  SALK-----LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115
            A       L + G   +  +  +   L   P  + +      +     +   A+     
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
            L+       A  +             A  H+++ +R+ P  ++   AY  + N LK+ +
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---AYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 52/355 (14%), Positives = 108/355 (30%), Gaps = 25/355 (7%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS 61
             +  A          +P  +       S+  Q  R+      +    +  ++       
Sbjct: 13  GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDR----SAHFSTLAIKQNPLLAE 68

Query: 62  AL----KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLL 117
           A      +Y      +      +  L   P      +     L+AA D   A+      L
Sbjct: 69  AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128

Query: 118 KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177
           + + +        G     L   + A+  + K +   P  +                   
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL------------G 176

Query: 178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237
               ++G++ +A+  F+ A+ LDPN     +  Y+ L  VL +      A+++   AL++
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 238 NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL-KMSKRKD 296
           +                    + A++  + A +  P   +    L  A K    +++ +D
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

Query: 297 WYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD 351
            Y             +         Q + ++ V    +A   F E AAA+  L  
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 98  KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
                A D+ +A      L +++ +N   LL     ++     D +       ++ +P  
Sbjct: 7   HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66

Query: 158 SELKKAYFALKNLLK 172
           +E   AY  L N+ K
Sbjct: 67  AE---AYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 14/89 (15%)

Query: 127 LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL 186
            +      Y   D + A+RH  +  R +P+++        L ++  +           +L
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTG---VLLLLSSIHFQ---------CRRL 49

Query: 187 RVAVEDFKAALALDPNHTAHNVHLYLGLC 215
             +      A+  +P       +  LG  
Sbjct: 50  DRSAHFSTLAIKQNPLL--AEAYSNLGNV 76

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 292 SKRKDWYKILGVSKTASIS--EIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVL 349
            +      +LG+ ++A  +   +++AY K   ++HPDK  D       K +++   Y+ +
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKM 59

Query: 350 GDDDKRARYDRGEDIEET--GMGGGGFNFGGGGQQFTF 385
            D  K A         +       G   +      F  
Sbjct: 60  EDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNE 97

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 1e-11
 Identities = 23/248 (9%), Positives = 56/248 (22%), Gaps = 38/248 (15%)

Query: 6   EALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKL 65
           ++   L  A      ++++      V      +       +    ++L     +    K+
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQAL-------QDLYQKMLVTDLEYALDKKV 56

Query: 66  ---------YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYL 116
                     +     +                     L + L  A+  Y   + E   +
Sbjct: 57  EQDLWNHAFKNQITTLQGQAKNRANP----NRSEVQANLSLFLEAASGFYTQLLQELCTV 112

Query: 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS 176
              D          G             +          +H         L ++ +    
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH-----CLVHLGDIARY--- 164

Query: 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236
                 + +   A   ++ A  L P+    N   Y  L  +    G     +     ++ 
Sbjct: 165 ------RNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIA 214

Query: 237 INEELIEA 244
           +      A
Sbjct: 215 VKFPFPAA 222

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 18/179 (10%), Positives = 39/179 (21%), Gaps = 39/179 (21%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
              Y++ L +L T    D          G +                + +          
Sbjct: 99  SGFYTQLLQELCTVFNVDLPCRVKSSQLGIIS--------------NKQTHTSAIVKPQS 144

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
           S+                          C    +    +       + A S   +  +  
Sbjct: 145 SSCS----------------------YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED 179
            +N +             DH     ++ + + +         A   L+  L K   + D
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA---ASTNLQKALSKALESRD 238

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (139), Expect = 5e-10
 Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 7/181 (3%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
               +E L   ++ I  + +   ++ +R  +L QL         +  +            
Sbjct: 157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD----SGPQGRLPENVLLKEL 212

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
             ++     +      +     L+          L V+     +    +  E   L  E+
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL---KKAYFALKNLLKKTKSA 177
           +  L  ++   RA   L       ++F     +DP  +      ++ F L+N + K + A
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

Query: 178 E 178
           +
Sbjct: 333 D 333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 31/314 (9%), Positives = 81/314 (25%), Gaps = 51/314 (16%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS 61
           +     L+  +  + A+P  +  +  R  VL+ L          E+  + +       +S
Sbjct: 43  ELDESVLELTSQILGANPDFATLWNCRREVLQHL----ETEKSPEESAALVKAELGFLES 98

Query: 62  ALKL-----------------YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK 104
            L++                      + + LE   + +             +     AA 
Sbjct: 99  CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 158

Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
             A  ++ T  L+  + +N  +  +R      L     +    +    +  +  EL +  
Sbjct: 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218

Query: 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224
           F      +                +   +   L                  +    L   
Sbjct: 219 FFTDPNDQ----------------SAWFYHRWLLGRAEPLFR----CELSVEKSTVLQSE 258

Query: 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD--------- 275
            ++     E    N+  +  ++    A       +  ++   +     P           
Sbjct: 259 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318

Query: 276 -MNIREALMRAEKA 288
              +  ++++ E A
Sbjct: 319 KFLLENSVLKMEYA 332

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 25/263 (9%), Positives = 65/263 (24%), Gaps = 27/263 (10%)

Query: 91  KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG 150
           +A+  +++     K Y SA        +  E +   L                     + 
Sbjct: 13  QAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVL-----------------ELTSQI 55

Query: 151 LRLDPEHSELKKAYFALKNLLKK-TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVH 209
           L  +P+ +     +   + +L+          S   ++  +   ++ L ++P    +   
Sbjct: 56  LGANPDFAT---LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--YGTW 110

Query: 210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA-LVQRGEAKLLTEDWEGAVEDLKSA 268
            +       +        L  C   L  +E        +R  A          +    S 
Sbjct: 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170

Query: 269 AQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN 328
             ++  +     +       L     +      G      + +     +        D++
Sbjct: 171 ITRNFSNY---SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227

Query: 329 VDNREEAENKFREIAAAYEVLGD 351
                       E     E+  +
Sbjct: 228 AWFYHRWLLGRAEPLFRCELSVE 250

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 30/272 (11%), Positives = 67/272 (24%), Gaps = 44/272 (16%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
            +    A      AIE +      +  R  +L+ L                    Q    
Sbjct: 56  DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--------------------QKDLH 95

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
             +    +    +P  Y             +             D +  +     +L +D
Sbjct: 96  EEMNYITAIIEEQPKNYQVWHHRRVLVEWLR-------------DPSQELEFIADILNQD 142

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
             N  A  HR          D   ++  + L+ D  +                  +    
Sbjct: 143 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGY 196

Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
             +  L   V+     + L P+    N   +  L  +L   G      +   + L++   
Sbjct: 197 NDRAVLEREVQYTLEMIKLVPH----NESAWNYLKGILQDRGL-SKYPNLLNQLLDLQPS 251

Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272
                +      +  +  E   ++ +    ++
Sbjct: 252 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 9/256 (3%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS 61
                A+     A++ DP   EA+ + G+   +  +     S   + L      Q+   +
Sbjct: 33  GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 92

Query: 62  ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA-----AKDYASAISETGYL 116
               + +    +    I +  L ++PA +       +         +K    ++      
Sbjct: 93  LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 152

Query: 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS 176
           L+  E  L A+     +        +       G                  + L   K 
Sbjct: 153 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 212

Query: 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236
                +  +   AV  ++ AL L P +    +     L    + LG  ++A+    EALN
Sbjct: 213 GATLANGNQSEEAVAAYRRALELQPGY----IRSRYNLGISCINLGAHREAVEHFLEALN 268

Query: 237 INEELIEALVQRGEAK 252
           +  +      + G   
Sbjct: 269 MQRKSRGPRGEGGAMS 284

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 27/193 (13%), Positives = 50/193 (25%), Gaps = 23/193 (11%)

Query: 108 SAISETGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165
           SA  + GY  +E+    +       G       D   A   F+  ++ DP+H E   A+ 
Sbjct: 1   SATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME---AWQ 57

Query: 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225
            L     +           +  +A+   +  L L P++    +     L          +
Sbjct: 58  YLGTTQAE---------NEQELLAISALRRCLELKPDNQTALMA----LAVSFTNESLQR 104

Query: 226 DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285
            A     + L         +    E               K        D    E     
Sbjct: 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG-----PSKRILGSLLSDSLFLEVKELF 159

Query: 286 EKALKMSKRKDWY 298
             A+++       
Sbjct: 160 LAAVRLDPTSIDP 172

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 18/143 (12%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 4   YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
             +AL+ L  AI+A P  +        +L      +     A+++L Q ++    +    
Sbjct: 12  LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFER----ADEQLMQSIKLFPEYLPGA 67

Query: 64  KLY-----DSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
                    +       +      ++         L+   L + ++DY         + +
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127

Query: 119 EDENNLEALLHRGRAYYYLADHD 141
             +      L    ++  + D D
Sbjct: 128 LRQEK--GFLANDTSFSDVRDID 148

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 19/130 (14%)

Query: 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236
            ++ +S+G+L+ A+E    A+   P     +  L     ++L   G  + A     +++ 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPK----DASLRSSFIELLCIDGDFERADEQLMQSIK 58

Query: 237 INEELIEALVQRGEAKLLTEDWEGAVED---------------LKSAAQQSPQDMNIREA 281
           +  E +    Q        +  +   +                   +   S    +  + 
Sbjct: 59  LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQV 118

Query: 282 LMRAEKALKM 291
              A +  ++
Sbjct: 119 SELALQIEEL 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 7/160 (4%)

Query: 218 LVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277
            +  G+ + AL    EA+  + +         E   +  D+E A E L  + +  P+ + 
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 278 IREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWH----PDKNVDNRE 333
               L    KA     RKD+ +    +K    +E                  ++  +   
Sbjct: 66  GASQLRHLVKA--AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123

Query: 334 EAENKFREIAAAYEVLGDDDKRARYDR-GEDIEETGMGGG 372
           + E   +E           D R   DR G  IE     G 
Sbjct: 124 QIEELRQEKGFLANDTSFSDVRDIDDRLGGYIELFSTAGN 163

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 4/161 (2%)

Query: 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKA 195
           +  D DV  +   K L +  +   +   +F  +N     K     +   +   A  +   
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 196 ALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT 255
              L P      +   L +    +K+   + A+ SC EAL I+    +AL +R +     
Sbjct: 69  GAKLQPV----ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL 124

Query: 256 EDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKD 296
           ++++ A+ DLK A + +P+D  I+  L++ ++ +K  K K+
Sbjct: 125 KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 3/135 (2%)

Query: 47  KELSQLLQAQSTFDSALKLYDSGEYTKPLEY---IDKVVLVFSPACSKAKLLKVKLLLAA 103
           K +         ++ A+K Y               D       P      L      L  
Sbjct: 31  KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 90

Query: 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163
            D+  A+      L+ D +N +AL  R + +  L ++D A    +K   + PE   ++  
Sbjct: 91  SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 150

Query: 164 YFALKNLLKKTKSAE 178
              +K  +K  K  E
Sbjct: 151 LLKVKQKIKAQKDKE 165

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 8/162 (4%)

Query: 99  LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS 158
           L    KD+  A+          + +     + G  Y  L +   A++ F + +  D   +
Sbjct: 14  LAADKKDWKGALD---AFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 70

Query: 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL 218
                   L    +K   A  ++ +  +++          L          +   +  + 
Sbjct: 71  VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 130

Query: 219 VKLGRGKDALSSCTEALNINEE-----LIEALVQRGEAKLLT 255
            K    K A      A ++  E     + +A+    + KL  
Sbjct: 131 AKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 172

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 25/184 (13%), Positives = 46/184 (25%), Gaps = 29/184 (15%)

Query: 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK 185
           +L + G       D   A   F     +   HS   +  F +  +               
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSA---VQDPHS---RICFNIGCMYTI---------LKN 51

Query: 186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL------------VKLGRGKDALSSCTE 233
           +  A + F  ++  D +         +   +              +   RG   +     
Sbjct: 52  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 111

Query: 234 ALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN--IREALMRAEKALKM 291
            L       E L          E+W+ A E L  A     +  +  I +A+    K    
Sbjct: 112 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 171

Query: 292 SKRK 295
               
Sbjct: 172 EPVV 175

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 29/217 (13%), Positives = 71/217 (32%), Gaps = 22/217 (10%)

Query: 55  AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETG 114
           AQ   +   +L+   +Y +      +  +  +P  +     +    L  +    A+++  
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRA-ITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 115 YLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174
             L+ D  +++A    G+    +  +D A  + Q+   L  E                  
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ----------------- 105

Query: 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234
           +    +     LR+A +    ++     H    +H YL      +     +  L  C   
Sbjct: 106 RLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL----TRLIAAERERELEECQRN 161

Query: 235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271
              +E+      Q+   +   + +   +++L S   +
Sbjct: 162 HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 20/196 (10%), Positives = 63/196 (32%), Gaps = 18/196 (9%)

Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184
           + L  +G   +    +  A   + + +  +P  +            +++ + A  +  + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244
                         LD      +V  +  L +  +++    +A+++   A ++ +E    
Sbjct: 65  L------------ELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

Query: 245 LVQRGEA--KLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILG 302
                 +  ++  +    ++E+ +   +        R      E+ L+  +R        
Sbjct: 109 FGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168

Query: 303 VSKTASISEIKRAYKK 318
               A  + I+  + K
Sbjct: 169 GHIRAQQACIEAKHDK 184

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 21/181 (11%), Positives = 55/181 (30%), Gaps = 7/181 (3%)

Query: 2   KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-AQSTFD 60
           + Y EA      AI  +P ++  Y +R     ++ + +   +   + L    Q  ++ F 
Sbjct: 18  RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77

Query: 61  SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120
                 +   Y + +  + +     +          +   L               ++E 
Sbjct: 78  LGQCQLEMESYDEAIANLQR-AYSLAKEQRLNFGDDIPSALRIAKKKRW-----NSIEER 131

Query: 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180
             + E+ LH        A+ +      Q+      +   ++     ++    K  +  D 
Sbjct: 132 RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191

Query: 181 V 181
           +
Sbjct: 192 L 192

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 3/116 (2%)

Query: 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236
             + VS   L    + F++  A      +     Y             +  +    E L 
Sbjct: 6   LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFE-YAWCLVRTRYNDDIRKGIVLLEELLP 64

Query: 237 I--NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290
               EE  + +          +++E A++ ++   Q  PQ+   +E     +KA+K
Sbjct: 65  KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 14/130 (10%)

Query: 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS 182
           ++EA+L        + D    ++ FQ            +  Y       +          
Sbjct: 1   HMEAVL---NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRK--- 54

Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
                  +   +  L         +   YL +     +L   + AL      L    +  
Sbjct: 55  ------GIVLLEELLPKGSKEEQRDYVFYLAVGN--YRLKEYEKALKYVRGLLQTEPQNN 106

Query: 243 EALVQRGEAK 252
           +A        
Sbjct: 107 QAKELERLID 116

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 54  QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISET 113
           Q     +   K    G     L+   +  +   P        +        DY  A  + 
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEA-IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 114 GYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK 168
              +    +  +    +  A  +L   + A+R +++GL+ +  + +LK+    ++
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 2/142 (1%)

Query: 39  KARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEY--IDKVVLVFSPACSKAKLLK 96
           K   +   KE   +      +  A+  Y        +EY   +K           A L  
Sbjct: 11  KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 70

Query: 97  VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE 156
               L  ++Y  A+      L  D  N + L  RG A   + + + A+  F+K L ++P+
Sbjct: 71  AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130

Query: 157 HSELKKAYFALKNLLKKTKSAE 178
           +   +   F  +   K+    +
Sbjct: 131 NKAARLQIFMCQKKAKEHNERD 152

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 28/216 (12%), Positives = 56/216 (25%), Gaps = 14/216 (6%)

Query: 1   MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD 60
           +   + A +D + A+   P + E + + G  L Q     A     +  L           
Sbjct: 50  LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 109

Query: 61  SALKLYDS-GEYTKPLEYIDKVV-LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK 118
           +        G      + +        +       L   +  L  K     + +      
Sbjct: 110 NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169

Query: 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178
           +++     +             +  +        L    SE     F L           
Sbjct: 170 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE---TNFYLGKYYLS----- 221

Query: 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214
                G L  A   FK A+A + ++   + +  L L
Sbjct: 222 ----LGDLDSATALFKLAVANNVHNFVEHRYALLEL 253

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 44/266 (16%), Positives = 71/266 (26%), Gaps = 31/266 (11%)

Query: 3   HYSEALDDLNTAIE----ADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQST 58
                L  +   +      D   ++  + RG +   L         A  + SQ L  +  
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL----ARNDFSQALAIRP- 68

Query: 59  FDSALKLYDSGEYTKPLEYIDKVVLVFSPACS------KAKLLKVKLLLAAKDYASAISE 112
            D        G Y       D     F            A L +   L        A  +
Sbjct: 69  -DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 127

Query: 113 TGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172
                ++D N+    L    A   L +    +   Q   + D E        F L N+ +
Sbjct: 128 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 187

Query: 173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232
           +T                 D     +L  + +         L K  + LG    A +   
Sbjct: 188 QTLMER----------LKADATDNTSLAEHLS----ETNFYLGKYYLSLGDLDSATALFK 233

Query: 233 EALNIN-EELIEALVQRGEAKLLTED 257
            A+  N    +E      E  LL +D
Sbjct: 234 LAVANNVHNFVEHRYALLELSLLGQD 259

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161
           A+  Y+  I  +        +  +  L +G       D   A R  Q+G   DP  ++ +
Sbjct: 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236

Query: 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT 204
           ++ F LK+L+     A +     +L    ++F   + LD    
Sbjct: 237 ESNF-LKSLID----AVNEGDSEQLSEHCKEFDNFMRLDKWKI 274

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 116 LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175
             + +    E L +     Y L ++ +A+R+       +  + ++     ALK++++   
Sbjct: 65  YKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG----ALKSMVEDKI 120

Query: 176 SAE 178
             E
Sbjct: 121 QKE 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.96
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.9
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.74
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.72
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.71
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.71
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.69
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.68
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.67
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.63
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.62
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.62
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.62
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.61
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.59
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.58
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.54
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.47
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.4
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.4
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.4
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.31
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.25
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.24
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.22
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.11
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.95
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.74
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.55
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.28
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.11
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.89
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.81
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.03
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.96
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	90.79
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	87.87
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	84.84
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	81.13

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-32  Score=245.08  Aligned_cols=308  Identities=17%  Similarity=0.175  Sum_probs=266.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      |+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.+++... .....++..|..+...|++++|+..+..
T Consensus        13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~   92 (388)
T d1w3ba_          13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH   92 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccc
Confidence            789999999999999999999999999999999999999999999988753 3456777888888899999999888766


Q ss_pred             H-------------------------------------------------------------------HHhhCCCcHHHH
Q 043837           81 V-------------------------------------------------------------------VLVFSPACSKAK   93 (409)
Q Consensus        81 ~-------------------------------------------------------------------~~~~~p~~~~~~   93 (409)
                      .                                                                   .+...|..+.++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
T d1w3ba_          93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW  172 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHH
Confidence            2                                                                   123345667888


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 043837           94 LLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK  173 (409)
Q Consensus        94 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~  173 (409)
                      ..+|.++...+++++|+..++++++.+|+++.++..+|.++...+++++|+..+++++..+|....   .+..++.++..
T Consensus       173 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~  249 (388)
T d1w3ba_         173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV---VHGNLACVYYE  249 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH---HHHHHHHHHHH
T ss_pred             HhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH---HHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999999888   88888888877


Q ss_pred             HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837          174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL  253 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  253 (409)
                      .         |++++|+..|+++++++|+    ++.++..+|.++...+++++|+..++.++...|.+...+..++.++.
T Consensus       250 ~---------~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         250 Q---------GLIDLAIDTYRRAIELQPH----FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             T---------TCHHHHHHHHHHHHHTCSS----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             C---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            7         9999999999999999999    67799999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchH
Q 043837          254 LTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNRE  333 (409)
Q Consensus       254 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~  333 (409)
                      ..|++++|+..|+++++++|++..++..++.+....++                 .++....|++ +...+|+..     
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~-al~l~P~~~-----  373 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-----------------LQEALMHYKE-AIRISPTFA-----  373 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC-----------------CHHHHHHHHH-HHTTCTTCH-----
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH-HHHhCCCCH-----
Confidence            99999999999999999999999998888888765554                 5667777777 455566531     


Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 043837          334 EAENKFREIAAAYEVLGD  351 (409)
Q Consensus       334 ~a~~~~~~i~~ay~~l~d  351 (409)
                         .....+..+|..++|
T Consensus       374 ---~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         374 ---DAYSNMGNTLKEMQD  388 (388)
T ss_dssp             ---HHHHHHHHHHHHTCC
T ss_pred             ---HHHHHHHHHHHHcCC
Confidence               234556677776665

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=248.86  Aligned_cols=272  Identities=19%  Similarity=0.203  Sum_probs=250.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH----------------------------
Q 043837            1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL----------------------------   52 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------------------------   52 (409)
                      +|++++|+..|+++++++|+++.++..+|.++..+|++++|+..+...+...                            
T Consensus        46 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (388)
T d1w3ba_          46 CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV  125 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999999999999999999999999999999966555433210                            


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH
Q 043837           53 -----------------------------------------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK   91 (409)
Q Consensus        53 -----------------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~   91 (409)
                                                               .........+..+...+++++|+..+.+ ++..+|+++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~~  204 (388)
T d1w3ba_         126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK-AVTLDPNFLD  204 (388)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHCTTCHH
T ss_pred             cccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHH-HHHhCcccHH
Confidence                                                     0123345566777888999999999999 8999999999


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837           92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus        92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      ++..+|.++...+++++|+..+++++..+|.....+..+|.++...|++++|+..|+++++++|++..   ++..++.++
T Consensus       205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~  281 (388)
T d1w3ba_         205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANAL  281 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---HHHHHHHHH
T ss_pred             HHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998   899999999


Q ss_pred             HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHH
Q 043837          172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEA  251 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  251 (409)
                      ...         +++++|+..++.++...|.    ....+..++.++...|++++|+..++++++++|+++.++..+|.+
T Consensus       282 ~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  348 (388)
T d1w3ba_         282 KEK---------GSVAEAEDCYNTALRLCPT----HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             HHH---------SCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHc---------CCHHHHHHHHHhhhccCCc----cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            888         9999999999999999999    778999999999999999999999999999999999999999999


Q ss_pred             HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837          252 KLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL  289 (409)
Q Consensus       252 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  289 (409)
                      +..+|++++|+.+|+++++++|++++++..++.+...+
T Consensus       349 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999998887654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.7e-28  Score=212.05  Aligned_cols=242  Identities=16%  Similarity=0.109  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837           23 EAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLL  101 (409)
Q Consensus        23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~  101 (409)
                      ...+.+|..+...|++++|+..+.+++.. +.....++..|..+...|++++|+..+.+ ++..+|.+..++..+|.++.
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR-CLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHh-hhcccccccccccccccccc
Confidence            34566777777777777777777777763 33456667777777777888888888888 88999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHH---------------HHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837          102 AAKDYASAISETGYLLKEDENNLEAL---------------LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA  166 (409)
Q Consensus       102 ~~~~~~~A~~~~~~al~~~p~~~~~~---------------~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  166 (409)
                      ..|++++|++.+++++..+|.....+               ......+...+.+.+|+..|.+++.++|+... ..++..
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~-~~~~~~  177 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID-PDVQCG  177 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC-HHHHHH
T ss_pred             ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc-cccchh
Confidence            99999999999999999988754321               11222344556788999999999999987543 126777


Q ss_pred             HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837          167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV  246 (409)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  246 (409)
                      ++.++...         |++++|+..+++++..+|+    .+.+|..+|.++..+|++++|+..|+++++++|+++.+++
T Consensus       178 l~~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  244 (323)
T d1fcha_         178 LGVLFNLS---------GEYDKAVDCFTAALSVRPN----DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY  244 (323)
T ss_dssp             HHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHH---------HHHhhhhcccccccccccc----cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence            88887777         9999999999999999999    7789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       247 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      .+|.+|..+|++++|+..|+++++++|++..+.
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            999999999999999999999999999987643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-27  Score=207.64  Aligned_cols=275  Identities=19%  Similarity=0.151  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 043837           57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY  136 (409)
Q Consensus        57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  136 (409)
                      ..+.+|..++..|++++|+..|++ +++.+|.++.+|..+|.++...|++++|+..+.++++++|++..++..+|.++..
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEA-AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHH-HHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            357899999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHccCCCcHHHHH------HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHH
Q 043837          137 LADHDVAQRHFQKGLRLDPEHSELKK------AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHL  210 (409)
Q Consensus       137 ~~~~~~A~~~~~~al~~~p~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  210 (409)
                      .|++++|+..+++++...|.......      ....+...   ..........+.+.+|+..+.+++.++|+..  .+.+
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~--~~~~  174 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS---KRILGSLLSDSLFLEVKELFLAAVRLDPTSI--DPDV  174 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC--CHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccc---hhhHHHHHHhhHHHHHHHHHHHHHHHhhccc--cccc
Confidence            99999999999999999987654110      00111100   1111222334788999999999999999854  5778


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          211 YLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       211 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      +..+|.++...|++++|+..+++++..+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..++.+...++
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  254 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG  254 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             hcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCC---CchHHHHHHHHHHHHHHHhcCChhhh
Q 043837          291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV---DNREEAENKFREIAAAYEVLGDDDKR  355 (409)
Q Consensus       291 ~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~---~~~~~a~~~~~~i~~ay~~l~d~~~~  355 (409)
                      .                 .++....|++ +...+|+...   ......+.....+..++..++..+..
T Consensus       255 ~-----------------~~~A~~~~~~-al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         255 A-----------------HREAVEHFLE-ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             C-----------------HHHHHHHHHH-HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             C-----------------HHHHHHHHHH-HHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            5                 5666667766 3334444311   00011122344566677777655543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.1e-24  Score=187.08  Aligned_cols=209  Identities=12%  Similarity=0.056  Sum_probs=131.3

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHH
Q 043837           15 IEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKL   94 (409)
Q Consensus        15 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~   94 (409)
                      |..+|+..+++..++.++.+.+.+++                                 |+.++++ +++++|.+..+|.
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~---------------------------------Al~~~~~-ai~lnP~~~~a~~   81 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSER---------------------------------AFKLTRD-AIELNAANYTVWH   81 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHH---------------------------------HHHHHHH-HHHHCTTCHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHH---------------------------------HHHHHHH-HHHHCCCChHHHH
Confidence            34577788888888888877666444                                 4444444 5566666666666


Q ss_pred             HHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 043837           95 LKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK  173 (409)
Q Consensus        95 ~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~  173 (409)
                      .+|.++..++ ++++|+..++++++++|++..+|..+|.++..+|++++|+..++++++++|++..   +|..++.++..
T Consensus        82 ~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~---a~~~~~~~~~~  158 (315)
T d2h6fa1          82 FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH---AWQHRQWVIQE  158 (315)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchH---HHHHHHHHHHH
Confidence            6666666654 3666666666666666666666666666666666666666666666666666666   66666666666


Q ss_pred             HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC------hhHHHHHHHHHHhcChhcHHHHHH
Q 043837          174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR------GKDALSSCTEALNINEELIEALVQ  247 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~  247 (409)
                      +         +++++|+..++++++++|.    +..+|.+++.++...+.      +++|+..+.++++++|++..+|..
T Consensus       159 ~---------~~~~~Al~~~~~al~~~p~----n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~  225 (315)
T d2h6fa1         159 F---------KLWDNELQYVDQLLKEDVR----NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY  225 (315)
T ss_dssp             H---------TCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             H---------HhhHHHHHHHHHHHHHCCc----cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHH
Confidence            6         6666666666666666666    45566666666665554      345666666666666666666666


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          248 RGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       248 la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      ++.++...+ .+++...+++++++.|+
T Consensus       226 l~~ll~~~~-~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         226 LKGILQDRG-LSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             HHHHHTTTC-GGGCHHHHHHHHHHTTT
T ss_pred             HHHHHHhcC-hHHHHHHHHHHHHhCCC
Confidence            666544333 35555666666665554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=8.7e-26  Score=200.34  Aligned_cols=263  Identities=13%  Similarity=-0.039  Sum_probs=202.9

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhC--CC
Q 043837            4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR----------VKARNSVAEKELSQLL-QAQSTFDSALKLYDS--GE   70 (409)
Q Consensus         4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~--~~   70 (409)
                      .++|+.+++++|+.+|++..+|..++.++..+++          +++|+..+...+...+ ....++..+..+...  ++
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence            4899999999999999999999988888766544          5566666666665332 334445555544443  34


Q ss_pred             chHHHHHHHHHHHhhCCCcHHHH-HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837           71 YTKPLEYIDKVVLVFSPACSKAK-LLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQK  149 (409)
Q Consensus        71 ~~~A~~~~~~~~~~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  149 (409)
                      +++|+..+.+ ++..+|....++ ..++.++...+.+++|+..++++++++|++..+|+.+|.++..+|++++|+..+.+
T Consensus       125 ~~~a~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~  203 (334)
T d1dcea1         125 WARELELCAR-FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (334)
T ss_dssp             HHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             HHHHHHHHHH-HHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            6777777777 677777766664 45567777777777777777777777777777777777777777777777777776


Q ss_pred             HHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837          150 GLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS  229 (409)
Q Consensus       150 al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  229 (409)
                      ++.+.|.+..   .+..    ...+         +..++++..+.+++...|.    ....+..++.++...+++.+|+.
T Consensus       204 ~~~~~~~~~~---~~~~----~~~l---------~~~~~a~~~~~~~l~~~~~----~~~~~~~l~~~~~~~~~~~~a~~  263 (334)
T d1dcea1         204 PENVLLKELE---LVQN----AFFT---------DPNDQSAWFYHRWLLGRAE----PLFRCELSVEKSTVLQSELESCK  263 (334)
T ss_dssp             CHHHHHHHHH---HHHH----HHHH---------CSSCSHHHHHHHHHHSCCC----CSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHH---HHHH----HHHh---------cchhHHHHHHHHHHHhCcc----hhhHHHHHHHHHHHHhhHHHHHH
Confidence            6666555443   2211    1222         7778899999999999998    45577888999999999999999


Q ss_pred             HHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          230 SCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       230 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      .+.+++..+|.+..++..+|.++..+|++++|+.+|+++++++|.+...+..+.....
T Consensus       264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999888887765544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-23  Score=181.64  Aligned_cols=210  Identities=14%  Similarity=0.057  Sum_probs=187.2

Q ss_pred             HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCcHHHH
Q 043837           83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA-DHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      +..+|....++..++.++...+.+++|+.+++++|+++|++..+|+.+|.++..++ ++++|+..+++++..+|++..  
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~--  113 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ--  113 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH--
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh--
Confidence            45678889999999999999999999999999999999999999999999999987 489999999999999999999  


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                       +|..++.++..+         |++++|+..++++++++|+    +..+|.++|.++...+++++|+.+++++++++|++
T Consensus       114 -a~~~~~~~~~~l---------~~~~eAl~~~~kal~~dp~----n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         114 -VWHHRRVLVEWL---------RDPSQELEFIADILNQDAK----NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             -HHHHHHHHHHHH---------TCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             -HHHHHhHHHHhh---------ccHHHHHHHHhhhhhhhhc----chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence             999999999999         9999999999999999999    78899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccC------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhh-hhhcccccCC
Q 043837          242 IEALVQRGEAKLLTED------WEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWY-KILGVSKTAS  308 (409)
Q Consensus       242 ~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~  308 (409)
                      ..+|.+++.++...+.      +++|+..+.++++++|++..++..+..+....+.......+ ..+.+.+...
T Consensus       180 ~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~  253 (315)
T d2h6fa1         180 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHS  253 (315)
T ss_dssp             HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcC
Confidence            9999999999887665      68999999999999999999988887765543333333333 3445555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.8e-22  Score=171.96  Aligned_cols=208  Identities=17%  Similarity=0.085  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      .+..++.+|..+...|++++|+..|++ ++.++|+++.++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~-al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  114 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQ-ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHH-hhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHH
Confidence            445556667777777778888888888 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG  213 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  213 (409)
                      +..+|++++|+..++++++.+|++..   ....++.+....         +..+.+...........+.... ...+...
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  181 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDPNDPF---RSLWLYLAEQKL---------DEKQAKEVLKQHFEKSDKEQWG-WNIVEFY  181 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH---------CHHHHHHHHHHHHHHSCCCSTH-HHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhccccHH---HHHHHHHHHHHh---------hhHHHHHHHHHHhhccchhhhh-hhHHHHH
Confidence            99999999999999999999999887   555555555544         5555555555555555444221 1111111


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837          214 LCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM  276 (409)
Q Consensus       214 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  276 (409)
                      ++. ....+.+..+...+...+...|....+++.+|.++..+|++++|+.+|++++..+|++.
T Consensus       182 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         182 LGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             TTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             HHH-HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            111 11223355566666666777888899999999999999999999999999999999864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.6e-20  Score=163.40  Aligned_cols=264  Identities=14%  Similarity=0.025  Sum_probs=219.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhC
Q 043837            1 MKHYSEALDDLNTAIEADPTL-----SEAYFHRGSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDS   68 (409)
Q Consensus         1 lg~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~   68 (409)
                      .|++++|+..++++++..|.+     ..++..+|.++..+|++++|+..+..++...       .........+..+...
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  104 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            489999999999999999986     3578889999999999999999999887733       3345667788889999


Q ss_pred             CCchHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 043837           69 GEYTKPLEYIDKVVLVFS--------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN-----LEALLHRGRAYY  135 (409)
Q Consensus        69 ~~~~~A~~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~  135 (409)
                      +++..|+..+.+ ++...        +....++..+|.++...|+++.|...+.+++...+..     ..++...+.++.
T Consensus       105 ~~~~~a~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (366)
T d1hz4a_         105 GFLQTAWETQEK-AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  183 (366)
T ss_dssp             TCHHHHHHHHHH-HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            999999999988 44332        2234577889999999999999999999999876643     457788899999


Q ss_pred             hcCChHHHHHHHHHHHccCCC----cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPE----HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY  211 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  211 (409)
                      ..+++.++...+.++....+.    ......++..++.++...         +++++|...+.+++...|.+.......+
T Consensus       184 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT---------GDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            999999999999998875433    222223455555555555         9999999999999999888766677888


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHh------cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837          212 LGLCKVLVKLGRGKDALSSCTEALN------INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       212 ~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  274 (409)
                      .++|.++...|++++|+..+++++.      ..|....++..+|.+|..+|++++|++.+++++++.+.
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999984      35677889999999999999999999999999987543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.4e-21  Score=166.36  Aligned_cols=225  Identities=16%  Similarity=0.076  Sum_probs=183.6

Q ss_pred             ChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837            3 HYSEALDDLNTAIEAD----PTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEY   77 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~   77 (409)
                      +.+.|+..+++++...    |..+.+++.+|.+|..+|++++|+..+.+++.. +.....++..|..+...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            4677888999998753    345679999999999999999999999999984 34567788999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837           78 IDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH  157 (409)
Q Consensus        78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  157 (409)
                      |++ ++..+|.++.++..+|.++..+|++++|+..++++++.+|++......++.++...+..+.+...........+..
T Consensus        94 ~~~-al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          94 FDS-VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHH-HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhH-HHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            999 9999999999999999999999999999999999999999999999999999988888777776666666666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837          158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI  237 (409)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  237 (409)
                      .........++.. ...         +.+..+...+...+...|.    ...+++++|.++...|++++|+.+|++++..
T Consensus       173 ~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         173 WGWNIVEFYLGNI-SEQ---------TLMERLKADATDNTSLAEH----LSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             THHHHHHHHTTSS-CHH---------HHHHHHHHHCCSHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHHHH-HHH---------HHHHHHHHHHHHhhhcCcc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            4311111111110 011         3455555566666666666    6778999999999999999999999999999


Q ss_pred             ChhcH
Q 043837          238 NEELI  242 (409)
Q Consensus       238 ~p~~~  242 (409)
                      +|++.
T Consensus       239 ~p~~~  243 (259)
T d1xnfa_         239 NVHNF  243 (259)
T ss_dssp             CCTTC
T ss_pred             CCCCH
Confidence            99764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.2e-21  Score=173.32  Aligned_cols=236  Identities=11%  Similarity=0.006  Sum_probs=207.5

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHhHHHHHHHHHHHH-HHHH-HHHHHHHHhCCCchHHHHHH
Q 043837            3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR--VKARNSVAEKELSQLLQ-AQST-FDSALKLYDSGEYTKPLEYI   78 (409)
Q Consensus         3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~~~-~~~~-~~~a~~~~~~~~~~~A~~~~   78 (409)
                      ++++|+.+++++++.+|++..+|..+|.++...++  +++|+..+.+++...+. ...+ +..+..+...+.+++|+..+
T Consensus        88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~  167 (334)
T d1dcea1          88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  167 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHH
Confidence            47899999999999999999999999999988876  78999999998886432 3443 45667777889999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837           79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus        79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      ++ ++..+|.+..+|..+|.++..+|++++|+..+.+++.+.|.....+    ..+..++..+++...+.+++..+|.+.
T Consensus       168 ~~-~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~  242 (334)
T d1dcea1         168 DS-LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPL  242 (334)
T ss_dssp             HT-TTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred             HH-HHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchh
Confidence            98 9999999999999999999999999999999999999988755443    345667888899999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837          159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN  238 (409)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  238 (409)
                      .   .+..++.++...         +++.+|+..+.+++..+|.    +..++..+|.++...|++++|+.+|+++++++
T Consensus       243 ~---~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         243 F---RCELSVEKSTVL---------QSELESCKELQELEPENKW----CLLTIILLMRALDPLLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             S---SCCCCHHHHHHH---------HHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             h---HHHHHHHHHHHH---------hhHHHHHHHHHHHHhhCch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            7   777888888777         9999999999999999999    88899999999999999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhccCHH
Q 043837          239 EELIEALVQRGEAKLLTEDWE  259 (409)
Q Consensus       239 p~~~~~~~~la~~~~~~~~~~  259 (409)
                      |.....|..++..+.....+.
T Consensus       307 P~~~~y~~~L~~~~~~e~~~~  327 (334)
T d1dcea1         307 PMRAAYLDDLRSKFLLENSVL  327 (334)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhHhhHHH
Confidence            999999999988887544433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-17  Score=123.06  Aligned_cols=109  Identities=17%  Similarity=0.292  Sum_probs=103.0

Q ss_pred             HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837          174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL  253 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  253 (409)
                      ...|..++..|++++|+..|+++++.+|+    ++.+|.++|.++..+|++++|+..|.++++++|+++.+|+.+|.++.
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc----chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            34677777789999999999999999999    78899999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          254 LTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       254 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      .+|++++|+..|+++++++|+++.+...+..++
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999999999998888765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.7e-17  Score=120.78  Aligned_cols=112  Identities=13%  Similarity=0.191  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      +.....+|..++..|+|++|+.+|++ ++..+|.++.+|..+|.++..+|++++|+..+.++++++|+++.+|+.+|.++
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~-al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSE-AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            34456789999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837          135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      ..+|++++|+..|+++++++|+++.   ++..++.+
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~l~~l  114 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQ---LKEGLQNM  114 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHH---HHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH
Confidence            9999999999999999999999998   66666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.9e-17  Score=129.44  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA  133 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  133 (409)
                      .+...+.+|..++..++|++|+..|.+ +   .|.++.+++++|.+|..+|++++|+.+|+++++++|+++.+|+++|.+
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~-i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA-V---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT-S---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh-c---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            455678899999999999999999976 3   566789999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCcH
Q 043837          134 YYYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus       134 ~~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      +..+|++++|+..|++++...+.+.
T Consensus        80 ~~~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHhhccHHHHHHHHHHHHHhCccCc
Confidence            9999999999999999998776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.5e-16  Score=137.01  Aligned_cols=203  Identities=9%  Similarity=0.001  Sum_probs=154.0

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 043837           62 ALKLYDSGEYTKPLEYIDKVVLVF------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLH  129 (409)
Q Consensus        62 a~~~~~~~~~~~A~~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  129 (409)
                      |..+...++|++|+.+|.+ ++..      .+....++..+|.||..+|++++|++++++++++.+..      ..++..
T Consensus        44 a~~y~~~~~~~~A~~~y~k-A~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLK-AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            4455667778888888877 4443      12345788999999999999999999999999986654      457888


Q ss_pred             HHHHHHh-cCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837          130 RGRAYYY-LADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA  205 (409)
Q Consensus       130 l~~~~~~-~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  205 (409)
                      +|.++.. .+++++|+.+|++++.+.+   .......++..++.++...         |+|++|+..|++++...+..+.
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~---------g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD---------GQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc---------ChHHHHHHHHHHHHHhCccchh
Confidence            9988865 6999999999999988643   3334445677777777777         9999999999999998887542


Q ss_pred             ---chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH-----HHHHHHHHHHh--ccCHHHHHHHHHHHHhhCCC
Q 043837          206 ---HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE-----ALVQRGEAKLL--TEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       206 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~  274 (409)
                         .....+...+.++...+++..|...++++++++|....     .+..+..++..  .+.+++|+..|.++.+++|.
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence               13456778899999999999999999999999886443     33445555544  45699999999888777653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.5e-17  Score=129.24  Aligned_cols=96  Identities=22%  Similarity=0.267  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837           93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK  172 (409)
Q Consensus        93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~  172 (409)
                      +++.|.++...|+|++|++.|.++   .|.++.+|+++|.+|..+|++++|+.+|+++++++|++..   +|.++|.++.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~---a~~~~g~~~~   81 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---AYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh---hHHHHHHHHH
Confidence            446799999999999999999874   5667899999999999999999999999999999999999   9999999999


Q ss_pred             HHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837          173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNH  203 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  203 (409)
                      .+         |++++|+..|++++...+.+
T Consensus        82 ~~---------g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          82 QT---------EKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HT---------TCHHHHHHHHHHHHHTTTTC
T ss_pred             hh---------ccHHHHHHHHHHHHHhCccC
Confidence            88         99999999999999877764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-16  Score=122.58  Aligned_cols=115  Identities=12%  Similarity=0.238  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837           53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR  132 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  132 (409)
                      ..+.....+|..+++.|+|++|+..|.+ +++.+|+++.+|..+|.|+..+|++++|+..|+++++++|++..+|..+|.
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~   86 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQ-AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhh-ccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHH
Confidence            4566677899999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837          133 AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus       133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      ++..+|++++|+..+++++.++|++..   ++..+..+.
T Consensus        87 ~~~~~g~~~eA~~~~~~a~~~~p~~~~---~~~~l~~~~  122 (159)
T d1a17a_          87 SNMALGKFRAALRDYETVVKVKPHDKD---AKMKYQECN  122 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHH
Confidence            999999999999999999999999998   555555554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3e-15  Score=132.28  Aligned_cols=266  Identities=14%  Similarity=-0.001  Sum_probs=207.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC---
Q 043837           18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA---   88 (409)
Q Consensus        18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~---   88 (409)
                      ++..+++...+|.++...|++++|+..+.+++...      .........+..+...|++++|+..|.+ ++...+.   
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~-a~~~~~~~~~   86 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ-TEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHTTC
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHhhcc
Confidence            34456788889999999999999999999998732      2345667789999999999999999998 5554322   


Q ss_pred             ---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837           89 ---CSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--------NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH  157 (409)
Q Consensus        89 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  157 (409)
                         ...++..++.++...+++..|+..+.+++.+.+.        ....+..+|.++...++++.|...+.+++...+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence               3567788999999999999999999999875321        23467789999999999999999999999876643


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC---ccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837          158 SE--LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH---TAHNVHLYLGLCKVLVKLGRGKDALSSCT  232 (409)
Q Consensus       158 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~  232 (409)
                      ..  ....+...+.++...         +++.++...+.++....+..   +.....++..++.++...+++++|...++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  237 (366)
T d1hz4a_         167 QPQQQLQCLAMLIQCSLAR---------GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR  237 (366)
T ss_dssp             CGGGGHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            32  222455555555555         99999999999888754432   22245678889999999999999999999


Q ss_pred             HHHhcChh----cHHHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHHhhcc
Q 043837          233 EALNINEE----LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ------SPQDMNIREALMRAEKALKMSK  293 (409)
Q Consensus       233 ~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~  293 (409)
                      +++...|.    ....+..+|.++...|++++|+..+++++..      .|....+...++.++...++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  308 (366)
T d1hz4a_         238 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS  308 (366)
T ss_dssp             HSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence            99987654    3567788999999999999999999999854      3444556666777766665533

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.1e-18  Score=160.15  Aligned_cols=228  Identities=11%  Similarity=0.024  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 043837            5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLV   84 (409)
Q Consensus         5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   84 (409)
                      -+|+++|++|++++|+.++++..+|.++...+++++|   +++++...+..... ..+...+-+..|..+++.+.+ ...
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~-~~~e~~Lw~~~y~~~ie~~r~-~~k   77 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALD-KKVEQDLWNHAFKNQITTLQG-QAK   77 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHH-HTHHHHHHHHHTHHHHHHHHH-HHS
T ss_pred             HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHH-HhHHHHHHHHHHHHHHHHHHH-hcc
Confidence            3799999999999999999999999999999999887   44544322211111 111222222235667777766 443


Q ss_pred             hC--CCcHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837           85 FS--PACSK-AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK  161 (409)
Q Consensus        85 ~~--p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  161 (409)
                      ..  +.... ....++.+....+.|+.|+..+.+++.++|.+...+..+|.++...+++++|+..+.+++..+|.     
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-----  152 (497)
T d1ya0a1          78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-----  152 (497)
T ss_dssp             CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH-----
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-----
Confidence            32  22222 23334566677889999999999999999999999999999999999999999999999876543     


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837          162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  241 (409)
                      .++..+|.++...         +++++|+.+|.+|++++|+    +..+++++|.++...|++.+|+.+|.+++..+|..
T Consensus       153 ~~~~~LG~l~~~~---------~~~~~A~~~y~~A~~l~P~----~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~  219 (497)
T d1ya0a1         153 HCLVHLGDIARYR---------NQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred             HHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Confidence            2778888888887         9999999999999999999    67799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 043837          242 IEALVQRGEAKLLT  255 (409)
Q Consensus       242 ~~~~~~la~~~~~~  255 (409)
                      +.++.+++.++.+.
T Consensus       220 ~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         220 PAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.9e-16  Score=123.31  Aligned_cols=116  Identities=17%  Similarity=0.282  Sum_probs=106.3

Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  250 (409)
                      .....+|..++..|+|++|+.+|+++++++|+    +..+|.++|.++..+|++++|+..|+++++++|+++.++..+|.
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~   86 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   86 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchh----hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHH
Confidence            33445677778889999999999999999999    78899999999999999999999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          251 AKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       251 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      ++..+|++++|+.++++++.++|+++.+...+..+...++
T Consensus        87 ~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          87 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888877765443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.3e-16  Score=134.86  Aligned_cols=238  Identities=9%  Similarity=-0.025  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 043837            5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLV   84 (409)
Q Consensus         5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   84 (409)
                      +.++..|++|+...|.++..|+..+..+...++....                   .+......+..++|..+|++ ++.
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~a~~i~~r-al~   92 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE-------------------KGDMNNAKLFSDEAANIYER-AIS   92 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-------------------TSCCHHHHHHHHHHHHHHHH-HHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHH-------------------HHHHhhcccchHHHHHHHHH-HHH
Confidence            4577789999999999999998887765443321110                   00001111234566677777 554


Q ss_pred             -hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837           85 -FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK  162 (409)
Q Consensus        85 -~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  162 (409)
                       ..|.+..+|...+.++...|+++.|...|++++...|.+. .+|..++......++++.|...|.+++...|.+..   
T Consensus        93 ~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---  169 (308)
T d2onda1          93 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---  169 (308)
T ss_dssp             TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---
T ss_pred             HcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---
Confidence             5788999999999999999999999999999999999764 47889999999999999999999999999999887   


Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL-  241 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-  241 (409)
                      .+...+.....        ..++.+.|..+|++++...|+    +..+|...+..+...|+++.|...|++++...|.+ 
T Consensus       170 ~~~~~a~~e~~--------~~~~~~~a~~i~e~~l~~~p~----~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         170 VYVTAALMEYY--------CSKDKSVAFKIFELGLKKYGD----IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHHHHH--------TSCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHHHHH--------hccCHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            66665554322        127899999999999999999    67799999999999999999999999999976533 


Q ss_pred             ---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837          242 ---IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN  277 (409)
Q Consensus       242 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  277 (409)
                         ...|..........|+.+.+...++++.+..|+...
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence               456777777777889999999999999999988754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=9.9e-16  Score=131.86  Aligned_cols=213  Identities=10%  Similarity=0.045  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHcCChHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc------
Q 043837           23 EAYFHRGSVLRQLCRVKARNSVAEKELSQ-------LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC------   89 (409)
Q Consensus        23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~------   89 (409)
                      +.|...|.+|...+++++|...+.+++..       ...+..+...|..+...+++++|+.+|.+ ++.+.+..      
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~  116 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN-AIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH-hhHHhhhcccchhH
Confidence            45777799999999999999999998873       33456677788889999999999999998 66554433      


Q ss_pred             HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH---
Q 043837           90 SKAKLLKVKLLLA-AKDYASAISETGYLLKEDEN------NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE---  159 (409)
Q Consensus        90 ~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---  159 (409)
                      ..++..+|.++.. .+++++|+..|++++++.+.      ...++..+|.++..+|++++|+..|++++...+....   
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  196 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence            5678888888865 69999999999999987432      2446889999999999999999999999998877643   


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc-hHHHHHHHHHHHHH--cCChhHHHHHHHHHH
Q 043837          160 -LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH-NVHLYLGLCKVLVK--LGRGKDALSSCTEAL  235 (409)
Q Consensus       160 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~la~~~~~--~~~~~~A~~~~~~al  235 (409)
                       +...+...+.++...         +++..|...++++++++|..+.. ...+...+..++..  ...+++|+..|+++.
T Consensus       197 ~~~~~~~~~~~~~l~~---------~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         197 SLKDYFLKKGLCQLAA---------TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             GHHHHHHHHHHHHHHT---------TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             hHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence             222445555555444         99999999999999999864321 23345556555554  356899999999988


Q ss_pred             hcChhcHHHH
Q 043837          236 NINEELIEAL  245 (409)
Q Consensus       236 ~~~p~~~~~~  245 (409)
                      +++|-....+
T Consensus       268 ~lD~~~~~~L  277 (290)
T d1qqea_         268 RLDKWKITIL  277 (290)
T ss_dssp             CCCHHHHHHH
T ss_pred             hcCHHHHHHH
Confidence            8887554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5e-16  Score=122.12  Aligned_cols=84  Identities=26%  Similarity=0.372  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837          208 VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK  287 (409)
Q Consensus       208 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  287 (409)
                      ..++.++|.||.++|++++|+.+++++|.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.+...+..+..
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             HHhh
Q 043837          288 ALKM  291 (409)
Q Consensus       288 ~~~~  291 (409)
                      .++.
T Consensus       142 ~~~~  145 (170)
T d1p5qa1         142 RIRR  145 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.69  E-value=7.2e-16  Score=118.92  Aligned_cols=125  Identities=21%  Similarity=0.263  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc------------chHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837          168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA------------HNVHLYLGLCKVLVKLGRGKDALSSCTEAL  235 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al  235 (409)
                      ..+......|..++..|+|.+|+..|++++.+.+....            ....++.++|.||.+++++++|+.+|++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            33444456678888889999999999999987764321            124578899999999999999999999999


Q ss_pred             hcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837          236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS  292 (409)
Q Consensus       236 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  292 (409)
                      +++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...+..+...++..
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998887766543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.8e-14  Score=125.00  Aligned_cols=202  Identities=8%  Similarity=-0.001  Sum_probs=168.2

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHh
Q 043837           72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA--------------KDYASAISETGYLLKE-DENNLEALLHRGRAYYY  136 (409)
Q Consensus        72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~  136 (409)
                      +.++.+|++ ++...|.++.+|+..+..+...              +..++|...|+++++. .|.+...|..++.++..
T Consensus        33 ~Rv~~vyer-Al~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          33 KRVMFAYEQ-CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            446667777 7777899999999888766443              3458899999999975 78889999999999999


Q ss_pred             cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH
Q 043837          137 LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK  216 (409)
Q Consensus       137 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~  216 (409)
                      +++++.|...|++++...|.+...  +|..++......         ++++.|...|.++++..|.    ....+...+.
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~--~w~~~~~~~~~~---------~~~~~ar~i~~~al~~~~~----~~~~~~~~a~  176 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTL--VYIQYMKFARRA---------EGIKSGRMIFKKAREDART----RHHVYVTAAL  176 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHH--HHHHHHHHHHHH---------HCHHHHHHHHHHHHTSTTC----CTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHH--HHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCC----cHHHHHHHHH
Confidence            999999999999999999977541  567777777776         9999999999999999998    5567778777


Q ss_pred             HHH-HcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHH
Q 043837          217 VLV-KLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN----IREALMRAEKAL  289 (409)
Q Consensus       217 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~  289 (409)
                      ... ..++.+.|...|++++...|+++..+...+..+...|++++|+..|++++...|.+++    ++......+...
T Consensus       177 ~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~  254 (308)
T d2onda1         177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence            654 4689999999999999999999999999999999999999999999999998875543    555555544433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.67  E-value=2.6e-15  Score=117.80  Aligned_cols=122  Identities=22%  Similarity=0.293  Sum_probs=106.3

Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc-----------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA-----------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN  238 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  238 (409)
                      +......|..++..|+|.+|+..|++++...+....           ....++.++|.||..++++++|+.++++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            334456677778889999999999999986554321           134668899999999999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837          239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM  291 (409)
Q Consensus       239 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  291 (409)
                      |+++.+++++|.++..+|++++|+.+|+++++++|+++.+...+..+...+..
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998888776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-17  Score=153.93  Aligned_cols=208  Identities=11%  Similarity=-0.075  Sum_probs=122.7

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHH-HHHHHHHHHH
Q 043837           59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE--NNLE-ALLHRGRAYY  135 (409)
Q Consensus        59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~-~~~~l~~~~~  135 (409)
                      +..|..+..++++++|   |++ ++..+|.....+.....+.  ...|..+++.+++.++...  +... ....++.++.
T Consensus        24 ~~la~~~~~~~~l~ea---ye~-~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~   97 (497)
T d1ya0a1          24 LGPAEVWTSRQALQDL---YQK-MLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEA   97 (497)
T ss_dssp             SCSSSSHHHHHHHHHH---HHH-HHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHchHHHH---HHH-HHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHH
Confidence            3344444444555444   444 4455554443332222111  1123445555555554321  1111 1223344555


Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC  215 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la  215 (409)
                      ..+.|+.|+..+.+++.++|++..   .+..++.++...         +++++|+..+.+++..+|.      .++.++|
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~---~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~~~------~~~~~LG  159 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRV---KSSQLGIISNKQ---------THTSAIVKPQSSSCSYICQ------HCLVHLG  159 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------------------CCHHHHHHHH------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHH---HHHHhHHHHHhC---------CCHHHHHHHHHHHhCCCHH------HHHHHHH
Confidence            566677777777777777777776   777777777766         8889999988888876653      4788999


Q ss_pred             HHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          216 KVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       216 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      .++...+++++|+.+|++|++++|++..++..+|.++...|++.+|+.+|.+++...|..+.++..|..+.....
T Consensus       160 ~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999988766544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=1.1e-15  Score=120.16  Aligned_cols=132  Identities=23%  Similarity=0.375  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc
Q 043837          127 LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH  206 (409)
Q Consensus       127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  206 (409)
                      +...|..++..+++++|+..|.+++...+...                              +.........+.|.    
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~------------------------------~~~~~~~~~~~~~~----   75 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------------------AAAEDADGAKLQPV----   75 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------------------HHSCHHHHGGGHHH----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh------------------------------hhhhhHHHHHhChh----
Confidence            45667777888888888888888775422111                              11111222344455    


Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE  286 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  286 (409)
                      ...++.++|.++.++|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            67799999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHhhc
Q 043837          287 KALKMS  292 (409)
Q Consensus       287 ~~~~~~  292 (409)
                      ..++..
T Consensus       156 ~~l~~~  161 (169)
T d1ihga1         156 QKIKAQ  161 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.4e-16  Score=129.44  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY  134 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  134 (409)
                      +......|..++..|+|++|+..|.+ ++..+|.++.+|.++|.||..+|++++|+.+|+++++++|+++.+|+.+|.+|
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~k-al~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGR-AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34456677777888888888888877 77888888888888888888888888888888888888888888888888888


Q ss_pred             HhcCChHHHHHHHHHHHccCCCcH
Q 043837          135 YYLADHDVAQRHFQKGLRLDPEHS  158 (409)
Q Consensus       135 ~~~~~~~~A~~~~~~al~~~p~~~  158 (409)
                      ..+|++++|+..|++++.++|++.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            888888888888888887766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=7.3e-15  Score=119.05  Aligned_cols=101  Identities=16%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN  169 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~  169 (409)
                      +..+...|..++..|+|++|+..|+++++++|+++.+|.++|.+|..+|++++|+.+|+++++++|++..   +|..+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~---a~~~lg~   80 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHFFLGQ   80 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHH---HHHHHHH
Confidence            3445555666666666666666666666666666666666666666666666666666666666665555   4555555


Q ss_pred             HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      ++..+         |++++|+..|+++++++|+
T Consensus        81 ~~~~l---------~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          81 CQLEM---------ESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHT---------TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHC---------CCHHHHHHHHHHHHHhCcc
Confidence            55444         5555555555555555443

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.1e-16  Score=103.86  Aligned_cols=67  Identities=58%  Similarity=0.962  Sum_probs=61.4

Q ss_pred             hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ..+||++|||.++++.++|+++|+++++.+|||++... ..++..|..|++||++|+||++|..||..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~   68 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAAYDQY   68 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTT-CHHHHHHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            36899999999999999999999999999999998754 36778899999999999999999999974

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.3e-16  Score=108.38  Aligned_cols=71  Identities=41%  Similarity=0.807  Sum_probs=64.1

Q ss_pred             chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC-----chHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD-----NREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~-----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ...+||++|+|.+.++.++|+++|+++++.+|||++..     ....++++|+.|++||++|+||++|..||....
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            45799999999999999999999999999999998654     357889999999999999999999999997544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.62  E-value=2e-14  Score=110.68  Aligned_cols=118  Identities=21%  Similarity=0.236  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC----------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 043837           53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA----------------CSKAKLLKVKLLLAAKDYASAISETGYL  116 (409)
Q Consensus        53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a  116 (409)
                      ..+......|..++..|+|.+|+..|.+ ++...|.                ...++.++|.||..++++++|+.+++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKE-ALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            3455566677777788888888888877 5544332                1357788999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       117 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      ++++|++..+|+.+|.++..+|++++|+.+|+++++++|++..   +...+..+...+
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~---~~~~l~~~~~kl  148 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD---IRNSYELCVNKL  148 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998   666676666544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2e-14  Score=112.82  Aligned_cols=116  Identities=22%  Similarity=0.278  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA---------------CSKAKLLKVKLLLAAKDYASAISETGYLLKE  119 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  119 (409)
                      +......|..++..++|++|+..|.+ ++...|.               ...++.++|.||+.+|++++|+..++++|.+
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKK-IVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            44445566666777777777777766 5544442               2356788999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      +|+++.+++.+|.+|..+|++++|+..|+++++++|++..   +...++.+...+
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~---~~~~l~~~~~~~  143 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA---AKTQLAVCQQRI  143 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH---HHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998   666666665544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.1e-15  Score=107.84  Aligned_cols=109  Identities=17%  Similarity=0.135  Sum_probs=95.5

Q ss_pred             hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcChhc--HHHHHHHHHHH
Q 043837          178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG---RGKDALSSCTEALNINEEL--IEALVQRGEAK  252 (409)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~  252 (409)
                      +..+..+++++|.+.|++++.++|+    ++.+++++|.++...+   ++++|+..|++++..+|.+  ..+++.+|.+|
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~p~----~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            3444559999999999999999999    7889999999998755   4567999999999988654  56899999999


Q ss_pred             HhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          253 LLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       253 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      ..+|++++|+.+|+++++++|++..+...+..+...++
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999888887766554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.2e-14  Score=106.75  Aligned_cols=111  Identities=20%  Similarity=0.299  Sum_probs=94.9

Q ss_pred             HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH-------HHHHH
Q 043837          175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI-------EALVQ  247 (409)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~  247 (409)
                      +.+..++..++|++|+.+|+++++++|+    +..++.++|.+|..+|+|++|+..|+++++++|+++       .++..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcc----cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            4455556669999999999999999999    778999999999999999999999999999998764       46777


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837          248 RGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK  290 (409)
Q Consensus       248 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  290 (409)
                      +|.++..++++++|+.+|++++..+|+ +++...+..+...++
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            888889999999999999999999875 566666666655443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.58  E-value=5.5e-14  Score=110.08  Aligned_cols=117  Identities=21%  Similarity=0.284  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhC---------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 043837           54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFS---------------PACSKAKLLKVKLLLAAKDYASAISETGYLLK  118 (409)
Q Consensus        54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  118 (409)
                      .+....+.|..++..|+|.+|+..|.+ ++...               +....++.++|.||..++++.+|+..++++++
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGK-IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            344455666666666666666666666 33221               12345678899999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      ++|++..+++.+|.++..+|++++|+..|.+++.++|++..   ++..++.+...+
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~---~~~~l~~~~~~~  145 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA---ARLQIFMCQKKA  145 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998   677777666555

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.58  E-value=1.1e-14  Score=105.52  Aligned_cols=93  Identities=10%  Similarity=-0.032  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      .+..|..++..|++++|+..|++ ++..+|+++.++..+|.++...+++++|+.+|+++++++|+++.+++.+|.+|..+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEA-VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhh-hcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            47788899999999999999999 89999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHH
Q 043837          138 ADHDVAQRHFQKGL  151 (409)
Q Consensus       138 ~~~~~A~~~~~~al  151 (409)
                      |++++|++++++.|
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999976

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=3.7e-14  Score=111.30  Aligned_cols=130  Identities=17%  Similarity=0.110  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 043837           24 AYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA  103 (409)
Q Consensus        24 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~  103 (409)
                      .+...|..+...|++.+|+..+.+++..........                 .... ....+|....++.++|.|+..+
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA-----------------EDAD-GAKLQPVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS-----------------CHHH-HGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh-----------------hhHH-HHHhChhhHHHHHHHHHHHHhh
Confidence            345566777777777777666666554322211110                 0011 2344577788999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       104 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      |++++|+..|+++|+++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..   +...+..+...+
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~---~~~~l~~~~~~l  158 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA---IQAELLKVKQKI  158 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998   677777666554

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.7e-15  Score=98.54  Aligned_cols=65  Identities=55%  Similarity=0.887  Sum_probs=60.0

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG  361 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~  361 (409)
                      ++||++|+|++.++.++|+++|+++++.+|||+....  .+.++++.|.+||++|+||++|..||++
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~--~~~~~~~~i~~Ay~vLsdp~~R~~YD~~   67 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKREIFDRY   67 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT--THHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccch--hHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            5899999999999999999999999999999997663  4667899999999999999999999985

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.55  E-value=3e-14  Score=103.28  Aligned_cols=95  Identities=16%  Similarity=0.075  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      ...+.+|.++...|++++|+..|++++..+|+++.+|..+|.++...+++++|+.+|+++++++|++..   ++..++.+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~la~~   93 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA---VHAALAVS   93 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccccc---chHHHHHH
Confidence            345788999999999999999999999999999999999999999999999999999999999999999   99999999


Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHH
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAAL  197 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al  197 (409)
                      +...         |++++|++.+++.|
T Consensus        94 y~~~---------g~~~~A~~~l~~~l  111 (112)
T d1hxia_          94 HTNE---------HNANAALASLRAWL  111 (112)
T ss_dssp             HHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHC---------CCHHHHHHHHHHHh
Confidence            9999         99999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=5.2e-15  Score=112.61  Aligned_cols=111  Identities=12%  Similarity=0.094  Sum_probs=87.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      +.|++|+..|+++++++|+++.+++.+|.++..++++..+...                       .+.+++|+..|++ 
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~-----------------------~~~~~~Ai~~~~k-   66 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA-----------------------KQMIQEAITKFEE-   66 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH-----------------------HHHHHHHHHHHHH-
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH-----------------------HHHHHHHHHHHHH-
Confidence            4689999999999999999999999999999988776543321                       1234667777777 


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKD-----------YASAISETGYLLKEDENNLEALLHRGRAYYY  136 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  136 (409)
                      +++++|+++.+++++|.+|..+|+           +++|+++|+++++++|++..++..++.+...
T Consensus        67 Al~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          67 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            888899999999999999887654           5777888888888888877777777766533

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=1.2e-14  Score=110.65  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=72.7

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 043837          100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED  179 (409)
Q Consensus       100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~  179 (409)
                      +.+++.|++|+..|+++++++|+++++++++|.++..++++..+.+.                           .     
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~---------------------------~-----   54 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA---------------------------K-----   54 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH---------------------------H-----
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH---------------------------H-----
Confidence            45566788888888888888888888888888887766555444331                           1     


Q ss_pred             HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC-----------hhHHHHHHHHHHhcChhcHHHHHHH
Q 043837          180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR-----------GKDALSSCTEALNINEELIEALVQR  248 (409)
Q Consensus       180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l  248 (409)
                          +.+++|+..|+++++++|+    ++.+|+++|.+|..+|+           +++|+.+|+++++++|++..++..+
T Consensus        55 ----~~~~~Ai~~~~kAl~l~P~----~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L  126 (145)
T d1zu2a1          55 ----QMIQEAITKFEEALLIDPK----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  126 (145)
T ss_dssp             ----HHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHhcch----hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHH
Confidence                4456677777777777777    55677777777665543           3555555555555555555555555


Q ss_pred             HHHH
Q 043837          249 GEAK  252 (409)
Q Consensus       249 a~~~  252 (409)
                      +.+.
T Consensus       127 ~~~~  130 (145)
T d1zu2a1         127 EMTA  130 (145)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-14  Score=105.69  Aligned_cols=110  Identities=13%  Similarity=0.061  Sum_probs=94.6

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHH
Q 043837           61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA---KDYASAISETGYLLKEDENN--LEALLHRGRAYY  135 (409)
Q Consensus        61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~  135 (409)
                      .+..++..+++++|.+.|.+ ++..+|.++.+++++|.++...   +++.+|+..|++++..+|.+  ..+++++|.+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~-aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQS-EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            44566777889999999998 9999999999999999999874   45667999999999998765  458999999999


Q ss_pred             hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837          136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT  174 (409)
Q Consensus       136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~  174 (409)
                      .+|++++|+.+|+++++++|++..   +...+..+...+
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~---A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQ---AKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHH---HHHHHHHHHHHH
Confidence            999999999999999999999998   666666555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-14  Score=104.84  Aligned_cols=107  Identities=14%  Similarity=0.189  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL  170 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~  170 (409)
                      ..+..+|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++.++|.+..   .+..++.+
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~---~~~~~a~~   81 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE---DYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH---HHHHHHHH
Confidence            456688999999999999999999999999999999999999999999999999999999999888766   44444444


Q ss_pred             HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837          171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPN  202 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  202 (409)
                      +..+  +......+++++|+.+|++++...++
T Consensus        82 ~~~l--g~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          82 YARI--GNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHH--HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHH--HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            4332  33333337777777777777776654

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.47  E-value=1.3e-14  Score=104.11  Aligned_cols=65  Identities=26%  Similarity=0.442  Sum_probs=58.4

Q ss_pred             hhhhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          294 RKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       294 ~~~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      ..++|++|||.+++  +.++|+++|+++++++|||+++..     .+|+.|++||++|+||++|..||....
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~-----e~F~~I~~AY~vLsd~~kR~~YD~~~~   73 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT-----TTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH-----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            57899999999998  678999999999999999998653     479999999999999999999997543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.44  E-value=3.4e-11  Score=101.55  Aligned_cols=230  Identities=15%  Similarity=0.122  Sum_probs=179.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837           21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYTKPLEYIDKVVLVFSPACSKAKLLK   96 (409)
Q Consensus        21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~p~~~~~~~~~   96 (409)
                      +|.+++.+|..+...+++++|+..++++... ......+..+..+..    ..++..|+..+.. +.  .+.++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~-a~--~~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAK-AC--DLNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HH--HTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcc-cc--cccccchhhcc
Confidence            5789999999999999999999999988653 355677888888876    6789999999976 33  34577888888


Q ss_pred             HHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837           97 VKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQRHFQKGLRLDPEHSELKKAYFALK  168 (409)
Q Consensus        97 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~  168 (409)
                      +.++..    ..+...|+..++.+....+  ..+...++..+..    ......|+..+.+....  .+..   .+..++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~L~  149 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--NDGD---GCTILG  149 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHH---HHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc--cccc---hhhhhh
Confidence            888875    5688999999999987654  5666777777765    44567777777776553  3444   677777


Q ss_pred             HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcChhcHHH
Q 043837          169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEALNINEELIEA  244 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~  244 (409)
                      .++...     .....+...+..+++.+.+.  .    +..+++++|.++..    ..++++|+.+|+++.+.  .++.+
T Consensus       150 ~~~~~~-----~~~~~~~~~~~~~~~~a~~~--g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a  216 (265)
T d1ouva_         150 SLYDAG-----RGTPKDLKKALASYDKACDL--K----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGG  216 (265)
T ss_dssp             HHHHHT-----SSSCCCHHHHHHHHHHHHHT--T----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             hhhccC-----CCcccccccchhhhhccccc--c----ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHH
Confidence            777542     11236788888888888764  3    45689999999987    67899999999999887  46889


Q ss_pred             HHHHHHHHHh----ccCHHHHHHHHHHHHhhCCC
Q 043837          245 LVQRGEAKLL----TEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       245 ~~~la~~~~~----~~~~~~A~~~~~~al~~~p~  274 (409)
                      ++.+|.+|..    ..++++|+.+|+++....+.
T Consensus       217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            9999999986    45899999999999988754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.40  E-value=6.1e-13  Score=102.60  Aligned_cols=111  Identities=17%  Similarity=0.153  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--------chHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837          165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--------HNVHLYLGLCKVLVKLGRGKDALSSCTEALN  236 (409)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  236 (409)
                      ..++..+..+..+...+..|+|++|+..|++++++.|+.+.        ..+.+|.++|.+|..+|++++|+..+++++.
T Consensus         4 ~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            34555666666677777889999999999999999887543        1357899999999999999999999999998


Q ss_pred             cChh-----------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837          237 INEE-----------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD  275 (409)
Q Consensus       237 ~~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  275 (409)
                      +.|.           ...+++++|.+|..+|++++|+.+|++++++.|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            7543           35578999999999999999999999999997654

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.6e-13  Score=90.89  Aligned_cols=66  Identities=29%  Similarity=0.468  Sum_probs=59.0

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED  363 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~  363 (409)
                      .++|++|++..+++.++|+++|+++++.||||+++.....++++|+.|++||++|++   +..||.+.+
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            689999999999999999999999999999999999888999999999999999964   444555444

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.40  E-value=9.4e-14  Score=90.83  Aligned_cols=66  Identities=18%  Similarity=0.388  Sum_probs=58.5

Q ss_pred             cchhhhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837          292 SKRKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE  362 (409)
Q Consensus       292 ~~~~~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~  362 (409)
                      ....++|++||+++.+  +..+|+++|+++++.||||+...     +++|++|++||++|.|+.+|.+|+.|.
T Consensus         8 ~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~-----~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_           8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC-----HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            3457899999999988  88999999999999999999754     347999999999999999999999753

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.6e-13  Score=88.71  Aligned_cols=65  Identities=23%  Similarity=0.391  Sum_probs=56.9

Q ss_pred             hhhhhhcccccCC--HHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837          296 DWYKILGVSKTAS--ISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR  360 (409)
Q Consensus       296 ~~~~~l~~~~~~~--~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~  360 (409)
                      +||++||+....+  .++|+++|++++..+|||+...    .+..++..+..|++||++|+||.+|..|.-
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            6899999998654  7899999999999999998543    356688889999999999999999999963

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1e-11  Score=86.43  Aligned_cols=84  Identities=17%  Similarity=0.012  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh-------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837          207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE-------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR  279 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  279 (409)
                      ++.-++.+|.++...|+|.+|+.+|++|+++.|.       ...++.++|.++..+|++++|+.+|+++++++|+++.+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            4557889999999999999999999999988654       368899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 043837          280 EALMRAEKALK  290 (409)
Q Consensus       280 ~~l~~~~~~~~  290 (409)
                      ..+..++..+.
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            88888776654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.25  E-value=2e-09  Score=90.30  Aligned_cols=216  Identities=16%  Similarity=0.141  Sum_probs=160.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQ----LCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYTK   73 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~   73 (409)
                      +++++|++.|+++.+.  +++.+++.+|.+|..    ..++..|...+....... .....+..+..+..    ..+.+.
T Consensus        16 ~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~a~~~l~~~~~~~~~~~~~~~~   92 (265)
T d1ouva_          16 KDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNK   92 (265)
T ss_dssp             TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccchhhccccccccccccchhhHH
Confidence            6899999999999876  588999999999997    667788777777665532 12223344444433    467888


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 043837           74 PLEYIDKVVLVFSPACSKAKLLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQR  145 (409)
Q Consensus        74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~  145 (409)
                      |+..++. +...  ....+...++..+..    ......|+..+.+...  +.+...+..+|.++..    ..+...+..
T Consensus        93 a~~~~~~-a~~~--g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  167 (265)
T d1ouva_          93 ALQYYSK-ACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALA  167 (265)
T ss_dssp             HHHHHHH-HHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHhh-hhhh--hhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchh
Confidence            9999987 5544  445666777777765    4567788888887765  5568889999999986    456778888


Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----c
Q 043837          146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----L  221 (409)
Q Consensus       146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~  221 (409)
                      +++.+.+.  .+..   +++.++.++..-.     -...++++|+.+|+++.+..      ++.+++++|.+|..    .
T Consensus       168 ~~~~a~~~--g~~~---A~~~lg~~y~~g~-----~~~~d~~~A~~~~~~aa~~g------~~~a~~~LG~~y~~G~g~~  231 (265)
T d1ouva_         168 SYDKACDL--KDSP---GCFNAGNMYHHGE-----GATKNFKEALARYSKACELE------NGGGCFNLGAMQYNGEGVT  231 (265)
T ss_dssp             HHHHHHHT--TCHH---HHHHHHHHHHHTC-----SSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTSSSS
T ss_pred             hhhccccc--cccc---cccchhhhcccCc-----ccccchhhhhhhHhhhhccc------CHHHHHHHHHHHHcCCCCc
Confidence            88887764  4566   8888988876510     01268999999999998873      35588999999986    4


Q ss_pred             CChhHHHHHHHHHHhcChhc
Q 043837          222 GRGKDALSSCTEALNINEEL  241 (409)
Q Consensus       222 ~~~~~A~~~~~~al~~~p~~  241 (409)
                      +++++|+.+|+++....+..
T Consensus       232 ~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         232 RNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             CCSTTHHHHHHHHHHHTCHH
T ss_pred             cCHHHHHHHHHHHHHCcCHH
Confidence            58999999999999886543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.24  E-value=9.2e-11  Score=90.07  Aligned_cols=107  Identities=18%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837           95 LKVKLLLAAKDYASAISETGYLLKEDENNL------------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK  162 (409)
Q Consensus        95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  162 (409)
                      ..|..++..|+|++|+..|++++++.|+.+            .+|.++|.+|..+|++++|+..+++++.+.|...    
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~----   89 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG----   89 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc----
Confidence            347777788888888888888888777643            3455666666666666666666666655432211    


Q ss_pred             HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837          163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE  240 (409)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  240 (409)
                                                         ...++.......+++++|.+|..+|++++|+..|++++++.|.
T Consensus        90 -----------------------------------~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          90 -----------------------------------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             -----------------------------------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                                               0111111113446677777777777777777777777777554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.6e-11  Score=83.06  Aligned_cols=81  Identities=25%  Similarity=0.150  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837           90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN-------LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK  162 (409)
Q Consensus        90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  162 (409)
                      ++-.+.+|.+++..|+|.+|+..|++++++.|.+       ..++.++|.++..+|++++|+.+++++++++|++..   
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~---   81 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR---   81 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH---
Confidence            4556778888888888888888888888765432       567778888888888888888888888888888877   


Q ss_pred             HHHHHHHHHHH
Q 043837          163 AYFALKNLLKK  173 (409)
Q Consensus       163 ~~~~l~~~~~~  173 (409)
                      ++.+++.+...
T Consensus        82 a~~Nl~~~~~~   92 (95)
T d1tjca_          82 ANGNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777665543

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=1.5e-12  Score=89.55  Aligned_cols=64  Identities=23%  Similarity=0.436  Sum_probs=57.4

Q ss_pred             hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCC--CchHHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837          295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV--DNREEAENKFREIAAAYEVLGDDDKRARY  358 (409)
Q Consensus       295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~--~~~~~a~~~~~~i~~ay~~l~d~~~~~~~  358 (409)
                      .+.|+.|++...++.++|+++|+++++.+|||++.  .....++..|+.|++||++|+||++|..|
T Consensus        33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            35689999999999999999999999999999744  34567899999999999999999999876

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.12  E-value=1e-10  Score=97.49  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=46.5

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837           99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL  171 (409)
Q Consensus        99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~  171 (409)
                      -.+..|++++|+..++++++.+|+++.++..++.++...|++++|+..|+++++++|++..   .+..++.++
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~---~~~~l~~ll   74 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP---GASQLRHLV   74 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHH
Confidence            3455667777777777777777777777777777777777777777777777777776665   444444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=4.7e-10  Score=87.71  Aligned_cols=118  Identities=14%  Similarity=-0.024  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837          125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT  204 (409)
Q Consensus       125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  204 (409)
                      ..+...|......|++++|+..|.+++.+.+....   .....                +.+     .......+.+.  
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l---~~~~~----------------~~w-----~~~~r~~l~~~--   65 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVL---DDLRD----------------FQF-----VEPFATALVED--   65 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT---GGGTT----------------STT-----HHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccc---ccCcc----------------hHH-----HHHHHHHHHHH--
Confidence            45566677777777777777777777777665432   00000                000     00111112222  


Q ss_pred             cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837          205 AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       205 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  270 (409)
                        ...++.+++.++...|++++|+.++++++.++|.+..+|..++.++..+|++.+|+..|+++..
T Consensus        66 --~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          66 --KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence              4568899999999999999999999999999999999999999999999999999999998843

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.08  E-value=2e-10  Score=95.72  Aligned_cols=130  Identities=13%  Similarity=0.003  Sum_probs=107.3

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH
Q 043837           62 ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD  141 (409)
Q Consensus        62 a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  141 (409)
                      +...+..|++++|+..+.+ +++.+|.++.++..++.++...|++++|+..|+++++++|++..++..++.++...+..+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~-al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIE-AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHH-HHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            4567889999999999999 999999999999999999999999999999999999999999999999999988777766


Q ss_pred             HHHHHHHHHHcc-CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837          142 VAQRHFQKGLRL-DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT  204 (409)
Q Consensus       142 ~A~~~~~~al~~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  204 (409)
                      ++...+...... .|....   .+...+.+....         |++++|+..+.++.+..|..+
T Consensus        82 ~a~~~~~~~~~~~~p~~~~---~~l~~a~~~~~~---------gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELT---KSLVSFNLSMVS---------QDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHhhhhhcccCchHHH---HHHHHHHHHHhC---------CCHHHHHHHHHHHHhcCCCCC
Confidence            665544443333 232222   455555555555         999999999999999998854

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.4e-08  Score=79.08  Aligned_cols=65  Identities=17%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837           87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL  151 (409)
Q Consensus        87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  151 (409)
                      +....++..++.++...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        64 ~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          64 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34457889999999999999999999999999999999999999999999999999999999983

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=9.7e-08  Score=67.47  Aligned_cols=84  Identities=10%  Similarity=0.024  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcChhc-HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837          207 NVHLYLGLCKVLVKLGR---GKDALSSCTEALNINEEL-IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL  282 (409)
Q Consensus       207 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  282 (409)
                      .....++.|+++.+..+   .++++..++.+++.+|.+ .+.++.+|.+|.++|+|++|+.+++++++++|++..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            56789999999997754   568999999999999876 48999999999999999999999999999999999988777


Q ss_pred             HHHHHHHh
Q 043837          283 MRAEKALK  290 (409)
Q Consensus       283 ~~~~~~~~  290 (409)
                      ..+...+.
T Consensus       114 ~~Ie~~~~  121 (124)
T d2pqrb1         114 SMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77766554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=2.6e-07  Score=65.28  Aligned_cols=71  Identities=15%  Similarity=0.138  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837           89 CSKAKLLKVKLLLAAK---DYASAISETGYLLKEDENNL-EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE  159 (409)
Q Consensus        89 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  159 (409)
                      .+.+.+..|.++....   +..+++..++.+++.+|... +.++.+|..|+.+|+|++|..+++++|+++|++..
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence            4788899999998664   56789999999999998764 79999999999999999999999999999999988

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.28  E-value=6.6e-06  Score=60.21  Aligned_cols=112  Identities=14%  Similarity=0.060  Sum_probs=82.8

Q ss_pred             ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHH
Q 043837          139 DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL  218 (409)
Q Consensus       139 ~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~  218 (409)
                      |+++|+.+|+++.+...  ..   +...++..           ...++++|+.+++++.+.  .    ++.+.+.+|.+|
T Consensus         8 d~~~A~~~~~kaa~~g~--~~---a~~~l~~~-----------~~~~~~~a~~~~~~aa~~--g----~~~a~~~Lg~~y   65 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE--MF---GCLSLVSN-----------SQINKQKLFQYLSKACEL--N----SGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC--TT---HHHHHHTC-----------TTSCHHHHHHHHHHHHHT--T----CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC--hh---hhhhhccc-----------cccCHHHHHHHHhhhhcc--c----chhhhhhHHHhh
Confidence            46677777777666532  22   33333321           127788999999998775  3    456888999998


Q ss_pred             HH----cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCC
Q 043837          219 VK----LGRGKDALSSCTEALNINEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQQSPQ  274 (409)
Q Consensus       219 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~  274 (409)
                      ..    ..++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+....
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             hhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            86    56789999999999876  568889999999887    56899999999999887543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.11  E-value=3.8e-05  Score=55.98  Aligned_cols=114  Identities=16%  Similarity=0.086  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC
Q 043837          105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG  184 (409)
Q Consensus       105 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (409)
                      ++++|+.+|+++.+..  ++.+++.++.  ....+.++|+.+++++.+.  .++.   +.+.++.++..-     .....
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~---a~~~Lg~~y~~g-----~~~~~   73 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGN---GCRFLGDFYENG-----KYVKK   73 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHC-----SSSCC
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchh---hhhhHHHhhhhc-----cccch
Confidence            4555555555555543  2333444432  2334556666666665543  3333   555555554321     00114


Q ss_pred             CHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcC
Q 043837          185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEALNIN  238 (409)
Q Consensus       185 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~  238 (409)
                      ++++|+.+|+++.+..      ++.+.+++|.+|..    ..+..+|+.+|+++.+..
T Consensus        74 d~~~A~~~~~~aa~~g------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          74 DLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhhccC------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            5666677776666542      23466667776665    456777777777776653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.11  Score=45.62  Aligned_cols=53  Identities=11%  Similarity=0.044  Sum_probs=39.5

Q ss_pred             HHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 043837           63 LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED  120 (409)
Q Consensus        63 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  120 (409)
                      ..+.+.+++++.+..+..     .|.+....+..+.+....|+..+|...+..+....
T Consensus        80 ~~L~~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~  132 (450)
T d1qsaa1          80 NELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (450)
T ss_dssp             HHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHhccCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            345666777776655533     67788888889999999999999988877776543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.81  E-value=0.042  Score=45.92  Aligned_cols=168  Identities=14%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             HHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHH
Q 043837           63 LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDV  142 (409)
Q Consensus        63 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  142 (409)
                      ..+.+.|.|+.|..+|.. +    +    -+-.+..++...++++.|.+.+.++     +++..|......+....+...
T Consensus        22 ~~c~~~~lye~A~~lY~~-~----~----d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~l   87 (336)
T d1b89a_          22 DRCYDEKMYDAAKLLYNN-V----S----NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL   87 (336)
T ss_dssp             -------CTTTHHHHHHH-T----T----CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHh-C----C----CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHH
Confidence            334455666666666644 1    1    1233445556666666666655544     345566665555555544433


Q ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC
Q 043837          143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG  222 (409)
Q Consensus       143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~  222 (409)
                      |.. ....+..   +++   ....+...+...         |.+++.+.+++.++...+.    ....+..++.+|.+.+
T Consensus        88 a~i-~~~~~~~---~~d---~l~~~v~~ye~~---------~~~e~Li~~Le~~~~~~~~----~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          88 AQM-CGLHIVV---HAD---ELEELINYYQDR---------GYFEELITMLEAALGLERA----HMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHH-TTTTTTT---CHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHTTSTTC----CHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHhhc---CHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHcCCcc----chHHHHHHHHHHHHhC
Confidence            211 1111111   111   112222223323         6666666666666655554    3445555555555432


Q ss_pred             ChhHHHHHHHHH-HhcChhc-------HHHHHHHHHHHHhccCHHHHHHHH
Q 043837          223 RGKDALSSCTEA-LNINEEL-------IEALVQRGEAKLLTEDWEGAVEDL  265 (409)
Q Consensus       223 ~~~~A~~~~~~a-l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~  265 (409)
                       .++-++.++.. ...++..       ...|-.+..+|.+.+++++|+..+
T Consensus       148 -~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         148 -PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             -HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence             23333333332 1122211       112234555666666666665443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.03  E-value=0.32  Score=40.35  Aligned_cols=130  Identities=12%  Similarity=0.042  Sum_probs=73.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837            2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV   81 (409)
Q Consensus         2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   81 (409)
                      |.|+.|...|...    +    -+-.+..++.++++++.|...+.+.    .....+......+....+..-|.. .   
T Consensus        28 ~lye~A~~lY~~~----~----d~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~~~e~~la~i-~---   91 (336)
T d1b89a_          28 KMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQM-C---   91 (336)
T ss_dssp             -CTTTHHHHHHHT----T----CHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHH-T---
T ss_pred             CCHHHHHHHHHhC----C----CHHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHhCcHHHHHHH-H---
Confidence            4566666666532    1    1335567788888888876665433    222333344444444433322211 0   


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837           82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQK  149 (409)
Q Consensus        82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  149 (409)
                       .......+.-.......+...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-+++++.
T Consensus        92 -~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~  157 (336)
T d1b89a_          92 -GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL  157 (336)
T ss_dssp             -TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             -HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence             00011234444556667777788888888888887777777777777777666543 4444555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.99  Score=39.04  Aligned_cols=190  Identities=8%  Similarity=-0.038  Sum_probs=103.1

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHH----HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837           62 ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKV----KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL  137 (409)
Q Consensus        62 a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a----~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  137 (409)
                      ++.-+...+.+.|+..+.. .....+.....+....    ..+...+..+.|...+........+.......++ .....
T Consensus       221 ~l~rla~~d~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~  298 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPS-LAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGT  298 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHH
T ss_pred             HHHHHhccChhHHHHHHHh-hhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHc
Confidence            3333444566777777766 3333333332222222    2222344556666666665554443333333333 34455


Q ss_pred             CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC---------------
Q 043837          138 ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN---------------  202 (409)
Q Consensus       138 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---------------  202 (409)
                      +++..+...+...- ..+..  .....+.++..+...         |+.++|...|..+... ++               
T Consensus       299 ~~~~~~~~~~~~l~-~~~~~--~~r~~YW~gRa~~~~---------G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~  365 (450)
T d1qsaa1         299 GDRRGLNTWLARLP-MEAKE--KDEWRYWQADLLLER---------GREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYE  365 (450)
T ss_dssp             TCHHHHHHHHHHSC-TTGGG--SHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCC
T ss_pred             CChHHHHHHHHhcC-ccccc--HHHHHHHHHHHHHHc---------CChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCC
Confidence            67777776665432 22222  123566677776666         8888888777776541 11               


Q ss_pred             --------Cc--cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837          203 --------HT--AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA  268 (409)
Q Consensus       203 --------~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  268 (409)
                              ..  ......-...+..+...|+...|...+..++..-  ++.-...++.+..+.|.++.|+....++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         366 LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence                    00  0011223355677777888888887777666432  3445566677778888888887766555

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.79  E-value=2.7  Score=32.26  Aligned_cols=172  Identities=10%  Similarity=-0.030  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCCcHHHHHHHHH-H
Q 043837           91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENN-LEALLHRGRAYYY-LADHDVAQRHFQKGLRLDPEHSELKKAYFA-L  167 (409)
Q Consensus        91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~-l  167 (409)
                      .-+..+|.+..+.++|++.+.+.+++++.+|.- .+-...++.+|-. .|..-.+...+.......+.+......... .
T Consensus         4 e~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~~~~~~~~i~~yk   83 (230)
T d2o02a1           4 NELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYR   83 (230)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence            345677888888899999999999999888763 3444455555433 244445555554433322222110000000 0


Q ss_pred             HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHh-
Q 043837          168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR----------GKDALSSCTEALN-  236 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~-  236 (409)
                      ..+...+       . .-..+.+..++..+--...++...+..+-..|..|...-+          .+.|...|++|++ 
T Consensus        84 ~kie~EL-------~-~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~  155 (230)
T d2o02a1          84 EKIETEL-------R-DICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEI  155 (230)
T ss_dssp             HHHHHHH-------H-HHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-------H-HHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            0000000       0 1122333333333321222222233344445555543211          2468888888775 


Q ss_pred             ----cChhcHH---HHHHHHH-HHHhccCHHHHHHHHHHHHh
Q 043837          237 ----INEELIE---ALVQRGE-AKLLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       237 ----~~p~~~~---~~~~la~-~~~~~~~~~~A~~~~~~al~  270 (409)
                          +.|.+|.   ...+.+. .|..+++.++|.+..++++.
T Consensus       156 A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         156 SKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                3455543   2233333 45567999999998888775

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=87.87  E-value=4.7  Score=30.99  Aligned_cols=176  Identities=12%  Similarity=0.028  Sum_probs=88.7

Q ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCC-CHHHHHHHHHHHHh-cCChHHHHHHHHHHHccCC--CcHHH
Q 043837           87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DEN-NLEALLHRGRAYYY-LADHDVAQRHFQKGLRLDP--EHSEL  160 (409)
Q Consensus        87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p--~~~~~  160 (409)
                      |..-.-+..+|.+..+.++|++.+.+.+++++.  +|. +.+-...++.+|-. .|..-.+...+........  .+...
T Consensus         1 ~~~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~~   80 (236)
T d1o9da_           1 PTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEH   80 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCChHH
Confidence            334455778888888999999999999999887  454 55555566665543 2333444444443322111  11110


Q ss_pred             HHHH-HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-----CC-----hhHHHH
Q 043837          161 KKAY-FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-----GR-----GKDALS  229 (409)
Q Consensus       161 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-----~~-----~~~A~~  229 (409)
                      .... .....+...+.        .--.+.+..++..+--...++...+..+-..|..|...     |+     .+.|..
T Consensus        81 ~~~i~~yk~kie~EL~--------~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~  152 (236)
T d1o9da_          81 VNSIREYRSKIENELS--------KICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT  152 (236)
T ss_dssp             HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHH
Confidence            0000 00001110000        11223333333333222222222333334445544322     21     356777


Q ss_pred             HHHHHHh-----cChhcH---HHHHHHHHHH-HhccCHHHHHHHHHHHHh
Q 043837          230 SCTEALN-----INEELI---EALVQRGEAK-LLTEDWEGAVEDLKSAAQ  270 (409)
Q Consensus       230 ~~~~al~-----~~p~~~---~~~~~la~~~-~~~~~~~~A~~~~~~al~  270 (409)
                      .|+.|+.     +.|.+|   ....+.+..+ ...++.++|.+..++++.
T Consensus       153 aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         153 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888764     355555   2334444444 456999999998888865

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=84.84  E-value=6.5  Score=29.73  Aligned_cols=168  Identities=13%  Similarity=0.058  Sum_probs=85.2

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhh----CC-CcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837           59 FDSALKLYDSGEYTKPLEYIDKVVLVF----SP-ACSKAKLLKVKLLL-AAKDYASAISETGYLLKEDENNLEALLHRGR  132 (409)
Q Consensus        59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~p-~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  132 (409)
                      .-.|...-..++|++.+.+..+ ++..    +| -+..-...+..+|- ..|....+...+....+....+... ..+..
T Consensus         8 ~y~Akl~eqa~ryddm~~~mK~-~v~~~~~~n~eLt~eERnLLsvayKn~i~~~R~s~R~i~~ie~k~~~~~~~-~~~~~   85 (220)
T d2o8pa1           8 KYRAQVFEWGGCFDKMFEALKS-LIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQLNNDEL-VKICS   85 (220)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHH-HHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHH-HHhhhcccCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccchhH-HHHHH
Confidence            3456667777888888888877 5444    22 34555555555553 3355556666555544433333221 11111


Q ss_pred             HHHhcCChHHHHHHHHHHH----c-cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc-----cCCC
Q 043837          133 AYYYLADHDVAQRHFQKGL----R-LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA-----LDPN  202 (409)
Q Consensus       133 ~~~~~~~~~~A~~~~~~al----~-~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~~~  202 (409)
                      -|... =-.+-...+..++    . +.|+.....-.+...|..+..+.+    +..+.-++|...|++|..     +.|.
T Consensus        86 ~y~~~-i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE----~~~~~~~~a~~aY~~A~~ia~~~l~pt  160 (220)
T d2o8pa1          86 EYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLE----FGLCSLEDSKKIHQDAFTLLCEHPDKI  160 (220)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHH----TTSSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHH----HhcchHHHHHHHHHHHHHHHHhcCCCC
Confidence            11110 0011111122221    1 234332222344455666655532    244777788888887765     3455


Q ss_pred             CccchHHHHHHHHHHHH-HcCChhHHHHHHHHH
Q 043837          203 HTAHNVHLYLGLCKVLV-KLGRGKDALSSCTEA  234 (409)
Q Consensus       203 ~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a  234 (409)
                      +|. ...+..|.+..++ -+++.++|.+..+.|
T Consensus       161 ~Pi-rLGLaLN~SVF~yEi~~~~~~A~~lAk~A  192 (220)
T d2o8pa1         161 EQL-PLGFIQNLAYILSEKYGEKKQVFNMLNSL  192 (220)
T ss_dssp             GGS-CHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             Ccc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            555 4444555555444 467777777766655

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.13  E-value=4.9  Score=25.62  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837           55 AQSTFDSALKLYDSGEYTKPLEYIDK   80 (409)
Q Consensus        55 ~~~~~~~a~~~~~~~~~~~A~~~~~~   80 (409)
                      +.....+|+.+-..|+|++|+.+|.+
T Consensus        15 A~~l~~~Av~~D~~g~y~eA~~~Y~~   40 (93)
T d1wfda_          15 AVAVLKRAVELDAESRYQQALVCYQE   40 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44445556666666666666666644