Citrus Sinensis ID: 043871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MTFHQLPSSFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAKTSAAEKETAILLKQMRPKWNIGW
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEcccccEEEEccHHHHHHHHHHHHHHHHccccccHHEEEEEEccccccccccHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHcccccccccEEEEEccEEcccccccHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHccHccEEEEEEEccccEEEcccEEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
mtfhqlpssfLSTALLFMFIFphcssveydgarifptvkqdeKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLrlipwgkaqivepnetivcehgedecyfNVIHACAikawpeqlLHFTFIKCleetswgptldkeKVWRTCCqnlklspnlikdcydngTGRWLELIYAAEterlkppiqfvpwltlngdavgpdygNFVKYVCEAysgshvpeackempksakTSAAEKETAILLKQMrpkwnigw
Flexible Loop (DISEMBL)
MTFHQLPSSFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRlipwgkaqivEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQnlklspnliKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAKTSAAEKETAillkqmrpkwnigw
Low Complexity Region (SEG)
MTFHQLPSSFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAKTSAAEKETAILLKQMRPKWNIGW
Disordered region (IsUnstruct)
********SFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGS*************************************
Disordered Region (DISOPRED)
****QLPSSFLSTALLFMFIFPHCSSVEYD*********QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHV*************************QMRPKWNIG*
Disordered Region (DISEMBL)
MTFHQLPSSFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEAC*************KETAILLKQMRPKWNIGW
Disordered Region (DISPRO)
****QLPSSFLSTALLFMFIFPHCSSVEYDGARI*****QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAKTSAAEKETAILLKQMRPKWNIGW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTFHQLPSSFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAKTSAAEKETAILLKQMRPKWNIGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
A6QPN6	244	Gamma-interferon-inducibl	yes	no	0.670	0.700	0.345	2e-18
B3SP85	246	Gamma-interferon-inducibl	yes	no	0.737	0.764	0.331	1e-17
P13284	250	Gamma-interferon-inducibl	yes	no	0.701	0.716	0.316	2e-17
Q499T2	248	Gamma-interferon-inducibl	yes	no	0.709	0.729	0.321	9e-17
Q9ESY9	248	Gamma-interferon-inducibl	yes	no	0.709	0.729	0.316	2e-16
O17861	277	GILT-like protein F37H8.5	yes	no	0.729	0.671	0.290	8e-14
P34276	323	GILT-like protein C02D5.2	no	no	0.768	0.606	0.262	6e-12
Q61Z40	220	GILT-like protein CBG0328	N/A	no	0.737	0.854	0.248	1e-06

>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 17/188 (9%)

Query: 44  VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNET----IVCE 99
           VN+S+YYE+L     EF+  +L   +   L  I+N+ L+P+G AQ  E N +      C+
Sbjct: 56  VNVSLYYEALCPGCREFLIRELFPTWLMVL-EILNVTLVPYGNAQ--ERNVSGKWEFTCQ 112

Query: 100 HGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL--KLSP 157
           HGE EC  N + AC +    EQ + F  I CLEE       D E+  + C Q    K+S 
Sbjct: 113 HGERECLLNKVEACLLDQL-EQKIAFLTIVCLEEMD-----DMEQNLKPCLQIYAPKVSA 166

Query: 158 NLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSG 217
           + I +C     G  L  I A  T+ L+PP ++VPW+ +NG+ +  D  + +  VC  Y G
Sbjct: 167 DSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMK-DAEHLLHLVCRLYQG 225

Query: 218 SHVPEACK 225
              P+ C+
Sbjct: 226 QK-PDVCQ 232

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 14/202 (6%)

Query: 36  PTVKQDEK-VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQ--IVEP 92
           P  K D   VN+++YYESL +    F+  +L   +   +  I+N+ L+P+G AQ   V  
Sbjct: 49  PVGKSDPPPVNVNLYYESLCNGCRYFLVRELFPTWLM-VWEILNVTLVPYGNAQERNVSG 107

Query: 93  NETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQ- 151
                C+HGE EC  N + AC +    E+ + F  I C+EE       D EK    C Q 
Sbjct: 108 RWEFTCQHGEQECKMNKVEACLLDKL-EKNMAFLTIVCIEELD-----DMEKNLEPCLQI 161

Query: 152 -NLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKY 210
              K+SP+ I +C     G  L  I A  T+ LKPP ++VPW+ +NG  +  +    ++ 
Sbjct: 162 YAPKVSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPMT-EKDQLLRL 220

Query: 211 VCEAYSGSHVPEACKEMPKSAK 232
           VC+ Y G   P+ C+ +  S K
Sbjct: 221 VCQLYEGEK-PDVCQILASSHK 241

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 17/196 (8%)

Query: 44  VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNET----IVCE 99
           VN+++YYE+L      F+  +L   +   +  I+N+ L+P+G AQ  E N +      C+
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTWLL-VMEILNVTLVPYGNAQ--EQNVSGRWEFKCQ 118

Query: 100 HGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLK--LSP 157
           HGE+EC FN + AC +     +L   T + C+EE       D E+    C Q     LSP
Sbjct: 119 HGEEECKFNKVEACVLDELDMELAFLTIV-CMEEFE-----DMERSLPLCLQLYAPGLSP 172

Query: 158 NLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSG 217
           + I +C     G  L    A  T+ L+PP ++VPW+T+NG  +  D    +  VC+ Y G
Sbjct: 173 DTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQG 231

Query: 218 SHVPEACKEMPKSAKT 233
              P+ C     S ++
Sbjct: 232 KK-PDVCPSSTSSLRS 246

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 12/193 (6%)

Query: 44  VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNET--IVCEHG 101
           VN+S+YYESL      F+  +L   +   +  I+N+ L+P+G AQ    + T    C+HG
Sbjct: 59  VNVSLYYESLCGACRYFLVRNLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEFTCQHG 117

Query: 102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL--KLSPNL 159
           E EC  N + AC +    E+   F  I C+EE       D EK    C Q    ++SP  
Sbjct: 118 ELECKLNKVEACLLDKL-EKEAAFLTIVCMEEME-----DMEKKLGPCLQLYVPEVSPES 171

Query: 160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSH 219
           I +C     G  L    A  T+ L+PP ++VPW+ +N   +  D    +  VCE Y G+ 
Sbjct: 172 IMECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPLT-DPSQLLSSVCELYQGTE 230

Query: 220 VPEACKEMPKSAK 232
            P+ C  M  + +
Sbjct: 231 KPDICSSMADAPR 243

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 12/193 (6%)

Query: 44  VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNET--IVCEHG 101
           V +S+YYESL      F+  DL   +   +  I+N+ L+P+G AQ    + T    C+HG
Sbjct: 59  VRVSLYYESLCGACRYFLVRDLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEFTCQHG 117

Query: 102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL--KLSPNL 159
           E EC  N++ AC +    E+   F  I C+EE       D EK    C Q    ++SP  
Sbjct: 118 ELECRLNMVEACLLDKL-EKEAAFLTIVCMEEMD-----DMEKKLGPCLQVYAPEVSPES 171

Query: 160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSH 219
           I +C     G  L    A  T+ L PP ++VPW+ +N   +  D    +  VC+ Y G+ 
Sbjct: 172 IMECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLK-DPSELLSIVCQLYQGTE 230

Query: 220 VPEACKEMPKSAK 232
            P+ C  +  S +
Sbjct: 231 KPDICSSIADSPR 243

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 10/196 (5%)

Query: 41  DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEH 100
           ++K+N++V  E+L      F+T  L  +  K+  + VN+ L+P+G A+++E + TI C+H
Sbjct: 73  NQKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLE-DGTIKCQH 131

Query: 101 GEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPN-- 158
           GE+EC  N    C I +  +Q    T + C+EE S    ++     + C + L++  +  
Sbjct: 132 GEEECSINKFEGCFIDSMQDQSPLPT-LSCIEE-SLQKKVEFADAVQQCFEKLQIGGDIQ 189

Query: 159 -LIKDCYDNGTGRWLELIYAAETERLKPPI-QFVPWLTLNGDAVGPDYG---NFVKYVCE 213
            L + C  +  G  L+   AA T  + P   +FVPW+ +NG ++    G        +CE
Sbjct: 190 RLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQNQLPTLLCE 249

Query: 214 AYSGSHVPEACKEMPK 229
            YSG      C+   K
Sbjct: 250 WYSGDKAIPYCEAALK 265

Caenorhabditis elegans (taxid: 6239)

>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 17/213 (7%)

Query: 27  VEYDGARIFPTVKQ--DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVN---LRL 81
           +EY+  +  PT+K+  +  V L VY E+     + F    L K +  D+   +N   L +
Sbjct: 121 IEYE-PKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAW--DILGRLNRIELNV 177

Query: 82  IPWGKAQIVEPNETI--VCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPT 139
           IP+GKA+  E        C+HG  EC  N +  C I  +     +   + C++      +
Sbjct: 178 IPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQGKY---S 234

Query: 140 LDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA 199
           LD+    +   +N       +++C     GR L  +   +T  L P I F+PW+ +NG  
Sbjct: 235 LDE--AMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSR 292

Query: 200 VGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAK 232
                 +  + VCEA     +P ACK+  +S +
Sbjct: 293 NSDALYDLTQNVCEAMQP--MPSACKDYLRSLQ 323

Caenorhabditis elegans (taxid: 6239)

>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 17/205 (8%)

Query: 17  FMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYES-LSDTGAEFITHDLGKVFEKDLTS 75
           F+FI   CSS + +       V   EKVN+  + E   SDT      H L        T 
Sbjct: 13  FLFILVLCSSKDTE-------VNNGEKVNIVAFGEGRCSDTSFWMKWHWLPMWRMLGSTG 65

Query: 76  IVNLRLIPWG-KAQIVEPN--ETIVCE--HGEDECYFNVIHACAIKAWPEQLLHFTFIKC 130
            +N    P+G K   V+ +  + +VCE  HG  EC  N + AC I+A P    +   + C
Sbjct: 66  RINFEYHPYGIKTTCVDSDSGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVTC 125

Query: 131 LEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFV 190
           ++      ++  E  +    +  KL    +  C D+  GR L   +     ++ P + + 
Sbjct: 126 IQGKQ-NISMAAEACFN---EPSKLERAKMMSCADSRHGRKLFSDHENFVAQMAPEMDWA 181

Query: 191 PWLTLNGDAVGPDYGNFVKYVCEAY 215
           PW+ +NG        +  +++C+ +
Sbjct: 182 PWILINGKRYKEAEEDLWQFLCDRF 206

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
224122192	269	predicted protein [Populus trichocarpa]	0.905	0.858	0.435	8e-50
255574274	275	Gamma-interferon-inducible lysosomal thi	0.878	0.814	0.432	4e-46
18390723	265	GILT domain-containing protein [Arabidop	0.847	0.815	0.418	1e-44
8954038	262	Contains similarity to an unknown protei	0.843	0.820	0.420	2e-44
224102749	185	predicted protein [Populus trichocarpa]	0.713	0.983	0.478	3e-44
356496241	263	PREDICTED: gamma-interferon-inducible ly	0.713	0.692	0.459	3e-44
224139218	242	predicted protein [Populus trichocarpa]	0.788	0.830	0.436	7e-44
224139226	185	predicted protein [Populus trichocarpa]	0.713	0.983	0.478	1e-43
255571431	271	Gamma-interferon-inducible lysosomal thi	0.815	0.767	0.419	2e-42
449454993	223	PREDICTED: gamma-interferon-inducible ly	0.701	0.802	0.480	2e-42

>gi|224122192|ref|XP_002318774.1| predicted protein [Populus trichocarpa] gi|222859447|gb|EEE96994.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 145/241 (60%), Gaps = 10/241 (4%)

Query: 9   SFLSTALLFMFIFPHCSSVEYDGAR----IFPTVK---QDEKVNLSVYYESLSDTGAEFI 61
           SFL   L+F+F+ P  SS EYD A+     F + K     EKV +S+YYESL    + FI
Sbjct: 8   SFLVLTLMFLFVTPSHSS-EYDAAQEPAPPFTSRKISRNSEKVTMSLYYESLCPYCSSFI 66

Query: 62  THDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQ 121
              L +V E DL +I+NLRL+PWG A I++ N TI C+HGEDECY N+IH CAI  WP+ 
Sbjct: 67  VGPLAQVLETDLMTILNLRLVPWGNA-ILDSNSTIECQHGEDECYLNIIHTCAINLWPDL 125

Query: 122 LLHFTFIKCLEETSWGPTLD-KEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAET 180
             HF FIKC+E+    P  +  E+ W  C   L+LS   IK CYD+G G+ L L    ET
Sbjct: 126 KKHFNFIKCIEKQYKAPDRNGAEESWEVCSGKLRLSTKSIKKCYDSGHGKKLVLQNGKET 185

Query: 181 ERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAKTSAAEKET 240
           + L+PP ++VPW+ ++   +  DY NF+ YVC+AY G  +P+ C   P ++       ++
Sbjct: 186 DHLRPPHEYVPWVVVDDTPLLDDYVNFIHYVCKAYKGKSLPKTCSSHPNTSINKDTSLQS 245

Query: 241 A 241
           A
Sbjct: 246 A 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574274|ref|XP_002528051.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] gi|223532512|gb|EEF34301.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 139/229 (60%), Gaps = 5/229 (2%)

Query: 13  TALLFMFI-FPHCSSVEYDGARIFPTVKQD-EKVNLSVYYESLSDTGAEFITHDLGKVFE 70
           ++ LF+FI     ++   + +  F + K D +KV LS+YYESL      FI   L +  +
Sbjct: 13  SSSLFLFISLCAAAAASIEPSPTFLSKKVDTQKVALSLYYESLCPYCQNFIVKPLAEAVK 72

Query: 71  KDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKC 130
            DL +IV+L+L PWG A +++PN T+VC+HGEDECY N IHACAI  WP+ + HF  +KC
Sbjct: 73  SDLMTIVDLQLFPWGNA-VLQPNNTVVCQHGEDECYLNTIHACAINLWPDVMKHFNLVKC 131

Query: 131 LEETSW-GPT-LDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQ 188
           +EE    G T +  E+ W+ C + LKL    IKDCYD G G  L L +  +T  LKPP Q
Sbjct: 132 IEEQQHPGITRVSAEESWQVCAEKLKLPSQRIKDCYDTGLGGQLLLQFGNKTNHLKPPHQ 191

Query: 189 FVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAKTSAAE 237
           +VPW+ +NG  +  +Y NFV YVC+ Y G  +P+AC     S+ +   E
Sbjct: 192 YVPWVVVNGTPLLVEYENFVYYVCKGYRGKLLPKACSSHHISSNSKEKE 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390723|ref|NP_563779.1| GILT domain-containing protein [Arabidopsis thaliana] gi|15146334|gb|AAK83650.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|15809756|gb|AAL06806.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|332189954|gb|AEE28075.1| GILT domain-containing protein [Arabidopsis thaliana]

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 6/222 (2%)

Query: 5   QLPSSFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHD 64
            +PS  L   + ++F+FP  SS +Y G  + P+     KV++ +YYESL    + FI + 
Sbjct: 3   SMPSKLLPVLVCYVFLFPFASSSDYSGVSL-PS--SSPKVSVGLYYESLCPYCSSFIVNH 59

Query: 65  LGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLH 124
           L K+FE DL SIV+L L PWG  ++   N T VC+HG  EC+ + + ACAI AWP+   H
Sbjct: 60  LAKLFEDDLISIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDH 119

Query: 125 FTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLK 184
           F FI C+E+       DK   W TC + L L+   + DC  +G G  L L YAAET  L+
Sbjct: 120 FPFIYCVEKLVTEHKYDK---WETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQ 176

Query: 185 PPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKE 226
           PP ++VPW+ ++G  +  DY NF+ Y+C+AY G+ VP AC +
Sbjct: 177 PPHKYVPWVVVDGQPLYEDYENFISYICKAYKGNKVPGACTK 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954038|gb|AAF82212.1|AC067971_20 Contains similarity to an unknown protein F7A7_100 gi|7327817 from Arabidopsis thaliana BAC F7A7 gb|AL161946. ESTs gb|N65842, gb|F19836 and gb|AI993679 come from this gene [Arabidopsis thaliana]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 133/221 (60%), Gaps = 6/221 (2%)

Query: 6   LPSSFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDL 65
           +PS  L   + ++F+FP  SS +Y G  + P+     KV++ +YYESL    + FI + L
Sbjct: 1   MPSKLLPVLVCYVFLFPFASSSDYSGVSL-PS--SSPKVSVGLYYESLCPYCSSFIVNHL 57

Query: 66  GKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHF 125
            K+FE DL SIV+L L PWG  ++   N T VC+HG  EC+ + + ACAI AWP+   HF
Sbjct: 58  AKLFEDDLISIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHF 117

Query: 126 TFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKP 185
            FI C+E+       DK   W TC + L L+   + DC  +G G  L L YAAET  L+P
Sbjct: 118 PFIYCVEKLVTEHKYDK---WETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQP 174

Query: 186 PIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKE 226
           P ++VPW+ ++G  +  DY NF+ Y+C+AY G+ VP AC +
Sbjct: 175 PHKYVPWVVVDGQPLYEDYENFISYICKAYKGNKVPGACTK 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102749|ref|XP_002334131.1| predicted protein [Populus trichocarpa] gi|222869678|gb|EEF06809.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 42  EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHG 101
           EKV +S+YYESL    + FI   L +V E DL +I+NLRL+PWG A I++ N TI C+HG
Sbjct: 3   EKVTMSLYYESLCPYCSSFIVGPLAQVLETDLMTILNLRLVPWGNA-ILDSNSTIECQHG 61

Query: 102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLD-KEKVWRTCCQNLKLSPNLI 160
           EDECY N+IH CAI  WP+   HF FIKC+E+    P  +  E+ W  C   L+LS   I
Sbjct: 62  EDECYLNIIHTCAINLWPDLKKHFNFIKCIEKQYKAPDRNGAEESWEVCSGKLRLSTQSI 121

Query: 161 KDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHV 220
           K CYD+G G+ L L    ET+ L+PP ++VPW+ ++   +  DY NF+ YVC+AY G  +
Sbjct: 122 KKCYDSGHGKKLVLQNGKETDHLRPPHEYVPWVVVDDTPLLDDYVNFIHYVCKAYKGKSL 181

Query: 221 PEAC 224
           P+ C
Sbjct: 182 PKTC 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496241|ref|XP_003516977.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Glycine max]

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 122/187 (65%), Gaps = 5/187 (2%)

Query: 41  DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEH 100
           +EKV LS+YYESL    A+FI + L ++F+  L SI+NLRL+PWG A+I  P+ T+VC+H
Sbjct: 41  NEKVTLSLYYESLCPYRADFIVNHLVRLFQTGLISILNLRLVPWGNARIA-PDGTVVCQH 99

Query: 101 GEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLI 160
           G+DEC+ N I ACAI  +P+ + HF F++CLE  +      +   W  C Q   L  + I
Sbjct: 100 GDDECFLNTIEACAITIYPDVVQHFRFVRCLERLTLE---GRHNQWVNCFQMTGLGTSPI 156

Query: 161 KDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHV 220
            DCY NG G+ ++  YA ET +L PP +FVPW+ +N  A+  DY NFV Y+C AY G+ +
Sbjct: 157 -DCYTNGNGKAIDQKYAKETAQLNPPHRFVPWVVVNNQALQEDYQNFVTYICRAYKGNVI 215

Query: 221 PEACKEM 227
           P AC+ +
Sbjct: 216 PNACRSL 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139218|ref|XP_002323009.1| predicted protein [Populus trichocarpa] gi|118482314|gb|ABK93083.1| unknown [Populus trichocarpa] gi|222867639|gb|EEF04770.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 125/206 (60%), Gaps = 5/206 (2%)

Query: 34  IFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPN 93
           +  +    + V LS+YYE+L    A+FI + L KVF+K L SIVNLRLIPWG A  ++PN
Sbjct: 21  LIASTSSSQNVTLSLYYETLCPYCADFIVNHLVKVFDKGLISIVNLRLIPWGNA-FIQPN 79

Query: 94  ETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL 153
            + VC+HG +EC+ N I AC +  +P+ + HF FI C+E+ S     +K   W  C    
Sbjct: 80  GSFVCQHGTNECFLNAIEACTVTIYPDAVRHFRFIHCVEKMSLE---NKMNEWVNCFGMS 136

Query: 154 KLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCE 213
            L    I DCY +G G  L+  YAAET +L PP +FVPW+ +N   +  D+ NFV YVC+
Sbjct: 137 GLGKAPI-DCYTSGYGEVLQRKYAAETSQLNPPHRFVPWVVVNNQPLREDFENFVSYVCK 195

Query: 214 AYSGSHVPEACKEMPKSAKTSAAEKE 239
           AY G+ +PEACK +P  + +S  E  
Sbjct: 196 AYRGTKIPEACKSLPLESNSSQKENH 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139226|ref|XP_002323011.1| predicted protein [Populus trichocarpa] gi|222867641|gb|EEF04772.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 42  EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHG 101
           EKV +S+YYESL    + FI   L +V E DL +I+NLRL+PWG A I++ N TI C+HG
Sbjct: 3   EKVTMSLYYESLCPYCSSFIAGPLAQVLETDLMTILNLRLVPWGNA-ILDSNNTIECQHG 61

Query: 102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGP-TLDKEKVWRTCCQNLKLSPNLI 160
           EDECY N+I ACAI  WP+   HF FIKC+E+    P     E+ W  C   L+LS   I
Sbjct: 62  EDECYLNIIQACAINLWPDLKKHFDFIKCIEKQYKAPDRYGAEESWEVCSGILRLSTQSI 121

Query: 161 KDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHV 220
           K CYD+G G+ L L    ET+ L+PP ++VPW+ ++   +  DYG+F+ YVC+AY G  +
Sbjct: 122 KKCYDSGHGKELVLQNGKETDHLRPPHKYVPWVVVDDTPLLDDYGSFIHYVCKAYKGKSL 181

Query: 221 PEAC 224
           P+ C
Sbjct: 182 PKTC 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571431|ref|XP_002526663.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] gi|223533963|gb|EEF35685.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 9/217 (4%)

Query: 39  KQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVC 98
           K   KVNLSVYYE+L  + A+FI  +L  +F   L  I+NLR+IPWG A +   N T+VC
Sbjct: 39  KNAAKVNLSVYYEALCPSCADFIVRNLMTIFNNGLIDIINLRMIPWGNAHVNRVNNTMVC 98

Query: 99  EHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPN 158
           ++G DEC  N I ACAI  W     ++  I C+E   +     + + W TC  +L LS  
Sbjct: 99  QNGLDECELNTIQACAINVWNNVNKYYALIYCIE---FLAIEGRHRNWLTCFSSLGLSKK 155

Query: 159 LIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGS 218
            + +CY NG G  L+++Y  ET  LKPP  FVPW+ +N   +G DY NF  YVC AY G 
Sbjct: 156 PVMECYKNGNGTKLDVVYGYETTHLKPPQTFVPWVLVNNQPLGTDYKNFTAYVCNAYKGD 215

Query: 219 HVPEACKEMPKSAKTSAAEKET-----AILLKQMRPK 250
            VP AC  MPK +    A         A+ +  +RPK
Sbjct: 216 PVPTACI-MPKISSVKGANPVCYRGIEAMSMTSLRPK 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454993|ref|XP_004145238.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449472266|ref|XP_004153541.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449514550|ref|XP_004164407.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 4/183 (2%)

Query: 43  KVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGE 102
           KV+L +YYESL    A FI + L K+F+ DL SIV+LRL+P+G A++   N++I C+HG 
Sbjct: 38  KVSLKLYYESLCPYSANFIVNYLIKLFDDDLISIVDLRLVPYGNARVGR-NDSITCQHGP 96

Query: 103 DECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKD 162
            EC  N + ACAI AWPE   HF FI C+E   +     K   W +C + L L+P  I D
Sbjct: 97  SECLLNTMEACAINAWPELDGHFPFIYCVEYLVYK---RKYTQWESCFEKLGLNPKPISD 153

Query: 163 CYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPE 222
           CY    G+ LEL YAAET+ L+PP ++VPW+ ++G  +  DY NF+ Y+CEAY G  VP 
Sbjct: 154 CYSTELGKKLELEYAAETDNLQPPHKYVPWVVVDGQPLYEDYENFINYICEAYKGPAVPT 213

Query: 223 ACK 225
           ACK
Sbjct: 214 ACK 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2007407	265	AT1G07080 "AT1G07080" [Arabido	0.949	0.913	0.38	8.8e-47
TAIR|locus:2149730	233	OSH1 "AT5G01580" [Arabidopsis	0.752	0.824	0.451	8.4e-42
TAIR|locus:2123286	231	AT4G12900 "AT4G12900" [Arabido	0.737	0.813	0.396	1.9e-37
TAIR|locus:2135813	232	AT4G12890 "AT4G12890" [Arabido	0.776	0.853	0.377	4.6e-34
TAIR|locus:2123251	243	GILT "AT4G12960" [Arabidopsis	0.705	0.740	0.378	6.7e-33
TAIR|locus:2135783	229	AT4G12870 "AT4G12870" [Arabido	0.721	0.803	0.355	3.4e-29
UNIPROTKB|B3SP85	246	IFI30 "Gamma-interferon-induci	0.737	0.764	0.321	1.9e-21
UNIPROTKB|A6QPN6	244	IFI30 "Gamma-interferon-induci	0.678	0.709	0.344	1e-20
UNIPROTKB|F1MAU3	244	IFI30 "Gamma-interferon-induci	0.678	0.709	0.344	1e-20
UNIPROTKB|P13284	250	IFI30 "Gamma-interferon-induci	0.709	0.724	0.314	2.1e-20

TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 95/250 (38%), Positives = 143/250 (57%)

Query:     6 LPSSFLSTALLFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDL 65
             +PS  L   + ++F+FP  SS +Y G  + P+     KV++ +YYESL    + FI + L
Sbjct:     4 MPSKLLPVLVCYVFLFPFASSSDYSGVSL-PS--SSPKVSVGLYYESLCPYCSSFIVNHL 60

Query:    66 GKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHF 125
              K+FE DL SIV+L L PWG  ++   N T VC+HG  EC+ + + ACAI AWP+   HF
Sbjct:    61 AKLFEDDLISIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHF 120

Query:   126 TFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKP 185
              FI C+E+       DK   W TC + L L+   + DC  +G G  L L YAAET  L+P
Sbjct:   121 PFIYCVEKLVTEHKYDK---WETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQP 177

Query:   186 PIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSHVPEACKEMPKS--AKTSAAEKETAIL 243
             P ++VPW+ ++G  +  DY NF+ Y+C+AY G+ VP AC +       ++   ++   + 
Sbjct:   178 PHKYVPWVVVDGQPLYEDYENFISYICKAYKGNKVPGACTKYATGNFIRSVKLKRSPLVS 237

Query:   244 LKQMRPKWNI 253
              K +   W++
Sbjct:   238 WKGVNKMWDV 247

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 89/197 (45%), Positives = 121/197 (61%)

Query:    37 TVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETI 96
             ++   +KV LS+YYE+L    AEFI + L K+FE  L S ++L+L+PWG A I  P+ TI
Sbjct:    20 SLSSSQKVTLSLYYEALCPFCAEFIVNRLPKIFETGLISSIDLQLVPWGNAAI-RPDGTI 78

Query:    97 VCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLS 156
             +C+HGE EC  N IHACAI A+P+ + HF +I C E+      L+K   W  C + + LS
Sbjct:    79 LCQHGEAECALNAIHACAINAYPDVMKHFGYIYCTEQLVLENKLEK---WADCLEMVGLS 135

Query:   157 PNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYS 216
                + DCY NG G  LE  YA ET  L P  +FVPW+ +N   +  +Y NFV YVC AY 
Sbjct:   136 RAAV-DCYINGYGNQLEQRYAEETSELYPAHRFVPWVVVNNLPLQENYQNFVMYVCNAYG 194

Query:   217 GSHVPEACKEMPKSAKT 233
              + VPEAC+ +  S +T
Sbjct:   195 SNQVPEACRILNSSVET 211

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/199 (39%), Positives = 118/199 (59%)

Query:    40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCE 99
             + +KV L++YYESL  +   FI H LGK+F  DL +I +L+LIP+G A + + + T+ C+
Sbjct:    33 ESDKVKLNLYYESLCPSCQNFIVHHLGKIFNTDLHTITDLKLIPFGNAHVSD-DLTVTCQ 91

Query:   100 HGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNL 159
             HGE+EC  N + ACAI+ WP Q LH+ FI+C+E  +          W +C +        
Sbjct:    92 HGEEECKLNALEACAIRTWPNQRLHYKFIRCVETNT--------NAWESCVKKYG-GEKA 142

Query:   160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSG-S 218
             I DCY+    + L L YA +T  LKP  ++VPW+TLNG+ +  + G+FV  VC+AY G +
Sbjct:   143 INDCYNGDLSKELILGYANQTLSLKPEHKYVPWMTLNGEPLYENIGDFVDLVCKAYKGKA 202

Query:   219 HVPEACKEMPKSAKTSAAE 237
              +P+ C     S +T   E
Sbjct:   203 ALPKLCYSSVLSQRTMMLE 221

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2135813 AT4G12890 "AT4G12890" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 79/209 (37%), Positives = 114/209 (54%)

Query:    16 LFMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTS 75
             LF  +F  C  V +  +      +   KV +++YYESL      FI  DLGK+F+ DL  
Sbjct:    12 LFPCLFLACLFV-FTYSNNLVVAENSNKVKINLYYESLCPYCQNFIVDDLGKIFDSDLLK 70

Query:    76 IVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETS 135
             I +L+L+P+G A I   N TI C+HGE+EC  N + AC I+  P+  L + FI+C+E+  
Sbjct:    71 ITDLKLVPFGNAHISN-NLTITCQHGEEECKLNALEACGIRTLPDPKLQYKFIRCVEK-- 127

Query:   136 WGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTL 195
                  D  + W +C +        I DCY+    + L L YA  T  LKP  ++VPW+TL
Sbjct:   128 -----DTNE-WESCVKKSGRE-KAINDCYNGDLSQKLILGYAKLTSSLKPKHEYVPWVTL 180

Query:   196 NGDAVGPDYGNFVKYVCEAYSGSHVPEAC 224
             NG  +  +Y N V  VC+AY G  +P+ C
Sbjct:   181 NGKPLYDNYHNLVAQVCKAYKGKDLPKLC 209

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 78/206 (37%), Positives = 117/206 (56%)

Query:    43 KVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGE 102
             KV L++YYESL     EFI  DLGK+F+ DL +I +L+L P+G A++ + N T+ C+HGE
Sbjct:    31 KVKLNLYYESLCPGCQEFIVDDLGKIFDYDLYTITDLKLFPFGNAELSD-NLTVTCQHGE 89

Query:   103 DECYFNVIHACAIKAWPEQL----------LHFTFIKCLEETSWGPTLDKEKVWRTCCQN 152
             +EC  N + ACA++ WP+Q             ++FI+C+E  + G        W +C +N
Sbjct:    90 EECKLNALEACALRTWPDQFDKCDGYGTQKSQYSFIRCVESDTKG--------WESCVKN 141

Query:   153 LKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG----DAVGPDYGNFV 208
                    I DCY+    R L L YA +T+ LKPP ++VPW+TLNG    D+V     + V
Sbjct:   142 SGRE-KAINDCYNGDLSRKLILGYATKTKNLKPPHEYVPWVTLNGKPLDDSV-QSTDDLV 199

Query:   209 KYVCEAYSG-SHVPEACKEMPKSAKT 233
               +C AY G + +P+ C      +K+
Sbjct:   200 AQICNAYKGKTTLPKVCNSSASMSKS 225

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135783 AT4G12870 "AT4G12870" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 69/194 (35%), Positives = 106/194 (54%)

Query:    40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCE 99
             + +KV L++YYESL      FI  +L KVF+ DL +I +++L+P+G A+ V  N T++C+
Sbjct:    29 ESDKVELNLYYESLCPGCQSFIVDELVKVFDSDLDTITDVKLVPFGYAK-VSNNLTVICQ 87

Query:   100 HGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNL 159
             HGE+EC  N + AC I   P     + FI+C+E  +     D    W + C     +   
Sbjct:    88 HGEEECKLNALEACVINTLPNPKSQYKFIRCVENNT-----DN---WESSCLKGYGNEKA 139

Query:   160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSG-S 218
             I DCY++   + L L YA +T  LKP  +FVPW+T+N   +     + V  VC+AY G +
Sbjct:   140 INDCYNSDLSKKLILGYAKQTSSLKPKHEFVPWVTINSKPLYTKLDDLVGQVCKAYKGKT 199

Query:   219 HVPEACKEMPKSAK 232
              +P  C     S +
Sbjct:   200 PLPIDCSSAALSER 213

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

UNIPROTKB|B3SP85 IFI30 "Gamma-interferon-inducible-lysosomal thiol reductase" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 65/202 (32%), Positives = 100/202 (49%)

Query:    36 PTVKQDEK-VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQI--VEP 92
             P  K D   VN+++YYESL +    F+  +L   +   +  I+N+ L+P+G AQ   V  
Sbjct:    49 PVGKSDPPPVNVNLYYESLCNGCRYFLVRELFPTWLM-VWEILNVTLVPYGNAQERNVSG 107

Query:    93 NETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQN 152
                  C+HGE EC  N + AC +    + +   T + C+EE       D EK    C Q 
Sbjct:   108 RWEFTCQHGEQECKMNKVEACLLDKLEKNMAFLTIV-CIEELD-----DMEKNLEPCLQI 161

Query:   153 L--KLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKY 210
                K+SP+ I +C     G  L  I A  T+ LKPP ++VPW+ +NG  +  +    ++ 
Sbjct:   162 YAPKVSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPM-TEKDQLLRL 220

Query:   211 VCEAYSGSHVPEACKEMPKSAK 232
             VC+ Y G   P+ C+ +  S K
Sbjct:   221 VCQLYEGEK-PDVCQILASSHK 241

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|A6QPN6 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 64/186 (34%), Positives = 95/186 (51%)

Query:    44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQI--VEPNETIVCEHG 101
             VN+S+YYE+L     EF+  +L   +   L  I+N+ L+P+G AQ   V       C+HG
Sbjct:    56 VNVSLYYEALCPGCREFLIRELFPTWLMVL-EILNVTLVPYGNAQERNVSGKWEFTCQHG 114

Query:   102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL--KLSPNL 159
             E EC  N + AC +    EQ + F  I CLEE       D E+  + C Q    K+S + 
Sbjct:   115 ERECLLNKVEACLLDQL-EQKIAFLTIVCLEEMD-----DMEQNLKPCLQIYAPKVSADS 168

Query:   160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSH 219
             I +C     G  L  I A  T+ L+PP ++VPW+ +NG+ +  D  + +  VC  Y G  
Sbjct:   169 IMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHM-KDAEHLLHLVCRLYQGQK 227

Query:   220 VPEACK 225
              P+ C+
Sbjct:   228 -PDVCQ 232

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1MAU3 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 64/186 (34%), Positives = 95/186 (51%)

Query:    44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQI--VEPNETIVCEHG 101
             VN+S+YYE+L     EF+  +L   +   L  I+N+ L+P+G AQ   V       C+HG
Sbjct:    56 VNVSLYYEALCPGCREFLIRELFPTWLMVL-EILNVTLVPYGNAQERNVSGKWEFTCQHG 114

Query:   102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL--KLSPNL 159
             E EC  N + AC +    EQ + F  I CLEE       D E+  + C Q    K+S + 
Sbjct:   115 ERECLLNKVEACLLDQL-EQKIAFLTIVCLEEMD-----DMEQNLKPCLQIYAPKVSADS 168

Query:   160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSH 219
             I +C     G  L  I A  T+ L+PP ++VPW+ +NG+ +  D  + +  VC  Y G  
Sbjct:   169 IMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHM-KDEEHLLHLVCRLYQGQK 227

Query:   220 VPEACK 225
              P+ C+
Sbjct:   228 -PDVCQ 232

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

UNIPROTKB|P13284 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 61/194 (31%), Positives = 95/194 (48%)

Query:    44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQI--VEPNETIVCEHG 101
             VN+++YYE+L      F+  +L   +   +  I+N+ L+P+G AQ   V       C+HG
Sbjct:    62 VNVTLYYEALCGGCRAFLIRELFPTWLL-VMEILNVTLVPYGNAQEQNVSGRWEFKCQHG 120

Query:   102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLK--LSPNL 159
             E+EC FN + AC +     +L   T + C+EE       D E+    C Q     LSP+ 
Sbjct:   121 EEECKFNKVEACVLDELDMELAFLTIV-CMEEFE-----DMERSLPLCLQLYAPGLSPDT 174

Query:   160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSH 219
             I +C     G  L    A  T+ L+PP ++VPW+T+NG  +  D    +  VC+ Y G  
Sbjct:   175 IMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQGKK 233

Query:   220 VPEACKEMPKSAKT 233
              P+ C     S ++
Sbjct:   234 -PDVCPSSTSSLRS 246

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IMP

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0005764 "lysosome" evidence=IDA

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

GO:0060333 "interferon-gamma-mediated signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00121004 hypothetical protein (269 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
pfam03227	109	pfam03227, GILT, Gamma interferon inducible lysoso	1e-24

>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT)

 Score = 93.9 bits (234), Expect = 1e-24
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 44  VNLSVYYESLSDTGAEFITHDLGKV-FEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGE 102
           VN+++YYESL     +FI + L    F+ DL  I +L+L+P+GKA+ V+      C+HG 
Sbjct: 1   VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKARCVDDGSVCTCQHGP 60

Query: 103 DECYFNVIHACAIKAWPEQLLHFTFIKCLEE 133
           +EC  N + AC I+  P Q L   FI+C++ 
Sbjct: 61  EECKLNALQACVIETLPNQKLQLPFIRCMQG 91

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
KOG3160	220	consensus Gamma-interferon inducible lysosomal thi	100.0
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	100.0
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.47
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	98.39
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.18
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	97.54
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	97.34
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	97.27
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	96.94
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	96.75
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	96.25
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	95.09
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	93.36
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	87.21
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	86.36
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	86.28
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	84.92

>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-52  Score=366.78  Aligned_cols=180  Identities=36%  Similarity=0.710  Sum_probs=162.5

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      +.+||+|+||||||||||++||++||.|+|.+.+.+++||++||||||+..++.++|+||||+.||.+|++|+|+|++++
T Consensus        37 ~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~  116 (220)
T KOG3160|consen   37 QAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLP  116 (220)
T ss_pred             cCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHHhhh
Confidence            55699999999999999999999999999986578999999999999976543389999999999999999999999999


Q ss_pred             cccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCee
Q 043871          120 EQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA  199 (255)
Q Consensus       120 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  199 (255)
                      ++..+++||.||+.  .    ...+.+..|+++.+.++..|++|++|++|.+|+.++|.+|..+.|+|.|||||+|||++
T Consensus       117 ~~~~~l~~i~C~~~--~----~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~  190 (220)
T KOG3160|consen  117 DQSDQLPFIRCIQG--K----QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWILVNGQP  190 (220)
T ss_pred             chHhhhceehhhhc--c----cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEEECCcc
Confidence            99999999999995  1    23445667999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhcHHHHHHHhccCCC-CCCCCC
Q 043871          200 VGPDYGNFVKYVCEAYSGSH-VPEACK  225 (255)
Q Consensus       200 ~~~~~~nL~~~IC~~y~g~~-~P~~C~  225 (255)
                      ..+++.||.+.+|.+|++.. +|..|.
T Consensus       191 ~~~~~~~l~~~~C~~~~~~~~~~~~~~  217 (220)
T KOG3160|consen  191 LQDAEQDLVTLLCEAYKGKKQKPLKCQ  217 (220)
T ss_pred             hHHHHHHHHHHHHHHHhhccccCcccc
Confidence            99999999999999999843 354444

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=100.00  E-value=1.7e-37  Score=246.71  Aligned_cols=106  Identities=39%  Similarity=0.770  Sum_probs=90.7

Q ss_pred             eEEEEEEEeCChhHHHHHHHhhHHHHH-hhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhcccccc
Q 043871           44 VNLSVYYESLSDTGAEFITHDLGKVFE-KDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQL  122 (255)
Q Consensus        44 V~V~vYyESlCPd~~~Fi~~qL~P~~~-~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~~~  122 (255)
                      |+|+|||||+||||++||++||.|+|. +++.|+|||+|||||||+....+++|+|||||.||+||++|+|+++++++..
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~   80 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN   80 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence            799999999999999999999999773 3799999999999999965443346999999999999999999999999988


Q ss_pred             chhhhhhhccccCCCCCCchhhHHHHhHhhcCC
Q 043871          123 LHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKL  155 (255)
Q Consensus       123 ~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl  155 (255)
                      .+|+||+||++..     +....+. |+++.+.
T Consensus        81 ~~~~~i~Cm~~~~-----~~~~~~~-Ca~~~~~  107 (108)
T PF03227_consen   81 AALPFIACMESSQ-----DFPKAIK-CAKKYGI  107 (108)
T ss_pred             hhcCEEEEEcCCC-----CCchhhh-hHHhcCC
Confidence            8999999999653     1222333 9998874

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.47  E-value=5e-06  Score=66.92  Aligned_cols=139  Identities=11%  Similarity=0.042  Sum_probs=89.7

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      ...++.|.+|+.-.||.|++|- ..|.+.+. ...+ +.+.++||--.   .....          ..-..-.|+..  .
T Consensus         3 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~-~~~~-~~~~~~~~p~~---~~~~~----------~~~~~~~~~~~--~   64 (154)
T cd03023           3 PNGDVTIVEFFDYNCGYCKKLA-PELEKLLK-EDPD-VRVVFKEFPIL---GESSV----------LAARVALAVWK--N   64 (154)
T ss_pred             CCCCEEEEEEECCCChhHHHhh-HHHHHHHH-HCCC-ceEEEEeCCcc---CcchH----------HHHHHHHHHHH--h
Confidence            3478999999999999999995 45666554 3444 66676666321   01100          11111123322  1


Q ss_pred             cccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCee
Q 043871          120 EQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA  199 (255)
Q Consensus       120 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  199 (255)
                      ++...++|..=+......   .........+.+.|++.+.+.+|.++.+.++.+.+..+....+  ++..+||++|||+.
T Consensus        65 ~~~~~~~~~~~lf~~~~~---~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v~g~~  139 (154)
T cd03023          65 GPGKYLEFHNALMATRGR---LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFIIGDTV  139 (154)
T ss_pred             ChhHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEECCEE
Confidence            233455554433322211   1233466788999999999999999988888888888888776  68999999999987


Q ss_pred             cC
Q 043871          200 VG  201 (255)
Q Consensus       200 ~~  201 (255)
                      ..
T Consensus       140 ~~  141 (154)
T cd03023         140 IP  141 (154)
T ss_pred             ec
Confidence            54

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.39  E-value=3.2e-06  Score=70.34  Aligned_cols=137  Identities=13%  Similarity=0.025  Sum_probs=91.0

Q ss_pred             CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhcccc
Q 043871           41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPE  120 (255)
Q Consensus        41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~  120 (255)
                      ..+|.|..|+.-.||.|++|- ..+.+.+. +..+.+.|+++|+.....   .+.          ...+...++.. .+ 
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~---~~~----------~aa~a~~aa~~-~~-   76 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFE-PILEAWVK-KLPKDVKFEKVPVVFGGG---EGE----------PLARAFYAAEA-LG-   76 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhh-HHHHHHHH-hCCCCceEEEcCCccccc---cch----------HHHHHHHHHHH-cC-
Confidence            678999999999999999995 55788776 467789999999765421   100          01111111111 11 


Q ss_pred             ccchhhhhh----hccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEEC
Q 043871          121 QLLHFTFIK----CLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLN  196 (255)
Q Consensus       121 ~~~~l~fI~----Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN  196 (255)
                        ....|..    -........  .....+...+.+.|++.+.+.+|.++.+-++.+.+..+....+  ++..+||++||
T Consensus        77 --~~~~~~~~lf~~~~~~~~~~--~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iIn  150 (178)
T cd03019          77 --LEDKLHAALFEAIHEKRKRL--LDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVN  150 (178)
T ss_pred             --cHhhhhHHHHHHHHHhCCCC--CCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEEC
Confidence              1112211    111111111  2245678999999999999999999887777777777777665  68999999999


Q ss_pred             Ceec
Q 043871          197 GDAV  200 (255)
Q Consensus       197 G~~~  200 (255)
                      |+..
T Consensus       151 G~~~  154 (178)
T cd03019         151 GKYV  154 (178)
T ss_pred             CEEE
Confidence            9975

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.18  E-value=1.1e-05  Score=65.96  Aligned_cols=147  Identities=14%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhc--cCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDL--TSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKA  117 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l--~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~  117 (255)
                      ...++.|.+|..-.||.|++|... +.++++ .+  .+.|.|.++|+-...             .....+-.+..|+...
T Consensus        10 ~~a~~~v~~f~d~~Cp~C~~~~~~-~~~~~~-~~i~~~~v~~~~~~~~~~~-------------~~~~~a~~~~~~~~~~   74 (162)
T PF13462_consen   10 PDAPITVTEFFDFQCPHCAKFHEE-LEKLLK-KYIDPGKVKFVFRPVPLDK-------------HSSLRAAMAAECVADQ   74 (162)
T ss_dssp             TTTSEEEEEEE-TTSHHHHHHHHH-HHHHHH-HHTTTTTEEEEEEESSSSH-------------HHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEECCCCHhHHHHHHH-Hhhhhh-hccCCCceEEEEEEccccc-------------hhHHHHHHHHHHHHHH
Confidence            566899999999999999999654 557776 35  578899998872221             1145555666666655


Q ss_pred             cccccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871          118 WPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG  197 (255)
Q Consensus       118 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  197 (255)
                      -   +.++.+..-+........ .. ....   .+.+.+.+.+.+|+++..-...+.+..+.+...  +++.+|+++|||
T Consensus        75 ~---~~~~~~~~~~~~~~~~~~-~~-~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~~inG  144 (162)
T PF13462_consen   75 G---KYFWFFHELLFSQQENFE-NK-KDIA---ANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTFFING  144 (162)
T ss_dssp             T---HHHHHHHHHHHHHCHSTS-SH-HHHH---HHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEEEETT
T ss_pred             h---HHHHHHHHHHHHhhhccc-hh-HHHH---HHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEEEECC
Confidence            2   344555545543222121 11 1111   234445778999998887677766666666655  689999999999


Q ss_pred             eecCc--chhcHHHHH
Q 043871          198 DAVGP--DYGNFVKYV  211 (255)
Q Consensus       198 ~~~~~--~~~nL~~~I  211 (255)
                      +.+..  ..++|...|
T Consensus       145 ~~~~~~~~~~~l~~~I  160 (162)
T PF13462_consen  145 KYVVGPYTIEELKELI  160 (162)
T ss_dssp             CEEETTTSHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHH
Confidence            98753  345555544

...

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=97.54  E-value=0.0011  Score=56.38  Aligned_cols=151  Identities=14%  Similarity=0.096  Sum_probs=93.4

Q ss_pred             EEEEEEeCChhHHHHHHHhhHHHHHhhcc--CceEEEEEeeeeceeecCCc----ceee-cCChh---------------
Q 043871           46 LSVYYESLSDTGAEFITHDLGKVFEKDLT--SIVNLRLIPWGKAQIVEPNE----TIVC-EHGED---------------  103 (255)
Q Consensus        46 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lVP~GnA~~~~~~~----~f~C-QHGp~---------------  103 (255)
                      |++|+.-.||+|--.. .+|..+.. .+.  +-++|++.||+-.......+    .... ++|..               
T Consensus         1 I~~~~D~~cP~cyl~~-~~l~~~~~-~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~   78 (201)
T cd03024           1 IDIWSDVVCPWCYIGK-RRLEKALA-ELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAA   78 (201)
T ss_pred             CeEEecCcCccHHHHH-HHHHHHHH-hCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            5799999999997663 45776665 353  25999999996442111111    0100 11110               


Q ss_pred             ----------hhhcchhhhhhhhcc-ccccchhhhhhhccccCCCCCC--chhhHHHHhHhhcCCChhhhhhhhcCchhH
Q 043871          104 ----------ECYFNVIHACAIKAW-PEQLLHFTFIKCLEETSWGPTL--DKEKVWRTCCQNLKLSPNLIKDCYDNGTGR  170 (255)
Q Consensus       104 ----------EC~gN~iqaCai~~~-~~~~~~l~fI~Cm~~~~~~~~~--~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~  170 (255)
                                .-..|...+|..-.. .......+|..=+....+.-.+  .........++..|+|.+.+.++.++.+.+
T Consensus        79 ~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~  158 (201)
T cd03024          79 AEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYA  158 (201)
T ss_pred             HcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccc
Confidence                      001244444443322 1223455666555432111000  234456788999999999999999999888


Q ss_pred             HHHHHHHHHhhhcCCCCceeeEEEECCeec
Q 043871          171 WLELIYAAETERLKPPIQFVPWLTLNGDAV  200 (255)
Q Consensus       171 ~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  200 (255)
                      +.+.+..+....+  ++.-+||++|||++.
T Consensus       159 ~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~  186 (201)
T cd03024         159 DEVRADEARARQL--GISGVPFFVFNGKYA  186 (201)
T ss_pred             hHHHHHHHHHHHC--CCCcCCEEEECCeEe
Confidence            8888888877765  689999999999853

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=97.34  E-value=0.0036  Score=54.62  Aligned_cols=138  Identities=8%  Similarity=-0.031  Sum_probs=82.9

Q ss_pred             CceEEEEEEEeCChhHHHHHHHhh--HHHHHhhccCceEEEEEeeeeceeecCC--cceeecCChhhhhcchhhhhhhhc
Q 043871           42 EKVNLSVYYESLSDTGAEFITHDL--GKVFEKDLTSIVNLRLIPWGKAQIVEPN--ETIVCEHGEDECYFNVIHACAIKA  117 (255)
Q Consensus        42 ~kV~V~vYyESlCPd~~~Fi~~qL--~P~~~~~l~d~vdl~lVP~GnA~~~~~~--~~f~CQHGp~EC~gN~iqaCai~~  117 (255)
                      .+..|.-|+-=.||.|.+|-. .|  .+.+.+.+.+-+.+..+|+--.......  .-+.    -.+|.+.      .+.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a~~----~a~~~~~------~~k  105 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWA----VAMALGV------EDK  105 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecccccchhhHHHHHHHH----HHHHhCc------HHH
Confidence            467899999999999999953 22  3666656666667766654211000000  0000    0112111      000


Q ss_pred             cccccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871          118 WPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG  197 (255)
Q Consensus       118 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  197 (255)
                      ..  ...+..+  +.. . ..  ........-+.+.|+|.+.+.+|.++..-...+.+..+.+..+  +++-+|+++|||
T Consensus       106 ~~--~~lf~~i--~~~-~-~~--~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInG  175 (207)
T PRK10954        106 VT--PPLFEGV--QKT-Q-TI--QSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNG  175 (207)
T ss_pred             HH--HHHHHHH--Hcc-C-CC--CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECC
Confidence            10  1122222  221 1 11  2234566778899999999999999987777777777777665  689999999999


Q ss_pred             eec
Q 043871          198 DAV  200 (255)
Q Consensus       198 ~~~  200 (255)
                      ++.
T Consensus       176 ky~  178 (207)
T PRK10954        176 KYM  178 (207)
T ss_pred             EEE
Confidence            985

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=97.27  E-value=0.0021  Score=54.26  Aligned_cols=150  Identities=14%  Similarity=0.051  Sum_probs=91.4

Q ss_pred             eEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCC-------------------cceeecCChhh
Q 043871           44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPN-------------------ETIVCEHGEDE  104 (255)
Q Consensus        44 V~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~-------------------~~f~CQHGp~E  104 (255)
                      ++|.+|+.-+||+|-... ..|..+.+ .+...++|++.+++=.......                   .+..-..++.+
T Consensus         1 ~~i~~~~D~~cp~c~~~~-~~l~~l~~-~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (193)
T cd03025           1 LELYYFIDPLCGWCYGFE-PLLEKLKE-EYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLE   78 (193)
T ss_pred             CeEEEEECCCCchhhCch-HHHHHHHH-HhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHh
Confidence            468999999999996653 34555544 4544588888887644211100                   00111111110


Q ss_pred             ---hhcchhhhhhhhcc---ccccchhhhhhhcccc----CCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHH
Q 043871          105 ---CYFNVIHACAIKAW---PEQLLHFTFIKCLEET----SWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLEL  174 (255)
Q Consensus       105 ---C~gN~iqaCai~~~---~~~~~~l~fI~Cm~~~----~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~  174 (255)
                         --.|...++..-..   ........|..-+...    +.++  +........+.+.|+|.+.+.++.++.+.++.+.
T Consensus        79 ~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i--~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~  156 (193)
T cd03025          79 LLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDL--ADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQ  156 (193)
T ss_pred             cccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHH
Confidence               00123333322211   1223556676666432    2222  2344678899999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCceeeEEEECCee
Q 043871          175 IYAAETERLKPPIQFVPWLTLNGDA  199 (255)
Q Consensus       175 ~~~~~T~~l~P~~~~VPwI~iNG~~  199 (255)
                      +..+....+  ++.-+||++|++..
T Consensus       157 ~~~~~a~~~--gv~g~Ptfvv~~~~  179 (193)
T cd03025         157 EDQKLAREL--GINGFPTLVLEDDN  179 (193)
T ss_pred             HHHHHHHHc--CCCccCEEEEEeCC
Confidence            888888776  57999999997653

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=96.94  E-value=0.0039  Score=53.38  Aligned_cols=144  Identities=15%  Similarity=0.135  Sum_probs=83.6

Q ss_pred             EEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCC-cceeecCChh--hhhcchhhhhh---hhccccc
Q 043871           48 VYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPN-ETIVCEHGED--ECYFNVIHACA---IKAWPEQ  121 (255)
Q Consensus        48 vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~-~~f~CQHGp~--EC~gN~iqaCa---i~~~~~~  121 (255)
                      +|+.-+|+.|-.+ ...|..+.. ++...+++++||.|++...+.. ....+.+..-  +=......+|.   -..+...
T Consensus         2 ~F~dPlc~~C~~~-E~~l~kl~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~   79 (176)
T PF13743_consen    2 LFVDPLCSWCWGF-EPELRKLKE-EYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGK   79 (176)
T ss_dssp             EEE-TT-HHHHHH-HHHHHHHHH-HS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-
T ss_pred             eeeCCCChHHHHh-HHHHHHHHH-HcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhCh
Confidence            5777899999777 233444444 6889999999999999543211 0112222211  11233444442   1112345


Q ss_pred             cchhhhhhhccccC----CCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871          122 LLHFTFIKCLEETS----WGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG  197 (255)
Q Consensus       122 ~~~l~fI~Cm~~~~----~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  197 (255)
                      +....|+.-|.+..    .++  +..+....||++.|+|.+...+=.+|+..++.+.+--+.++.+  +++-.|+++|-+
T Consensus        80 k~~~~fL~~lQ~a~~~~~~~~--s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m--~I~~~Ptlvi~~  155 (176)
T PF13743_consen   80 KKARRFLRALQEALFLEGKNY--SDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREM--GITGFPTLVIFN  155 (176)
T ss_dssp             H--HHHHHHHHHHHHTS---T--TSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHT--T-SSSSEEEEE-
T ss_pred             hhHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEEEe
Confidence            66788888886432    222  2346789999999999999888888999999999988889888  589999999855

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=96.75  E-value=0.0081  Score=50.43  Aligned_cols=145  Identities=15%  Similarity=0.070  Sum_probs=84.7

Q ss_pred             EEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeec-CCc----c--------------------eeec
Q 043871           45 NLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVE-PNE----T--------------------IVCE   99 (255)
Q Consensus        45 ~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~-~~~----~--------------------f~CQ   99 (255)
                      +|++|+.-.||.|-.+.. .|..+.. ...+ ++|++.||.-..... ..+    .                    +.-.
T Consensus         1 ~i~~~~D~~Cp~cy~~~~-~l~~l~~-~~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~   77 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASP-RLRKLRA-EYPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN   77 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHH-HHHHHHH-HHTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred             CEEEEEeCCCHHHHHHHH-HHHHHHH-HhcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence            589999999999988753 4555554 3434 999999996331100 000    0                    0000


Q ss_pred             CChhhhhcchhhhhhhhcc-ccccchhh-----hhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHH
Q 043871          100 HGEDECYFNVIHACAIKAW-PEQLLHFT-----FIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLE  173 (255)
Q Consensus       100 HGp~EC~gN~iqaCai~~~-~~~~~~l~-----fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll  173 (255)
                      ..+.. .+|...++.+-.. ........     |-....+ +.++  +..+.....+.+.|+|.+.+.+-.++..++..+
T Consensus        78 ~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~-~~~i--~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~  153 (193)
T PF01323_consen   78 FPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVE-GRDI--SDPDVLAEIAEEAGLDPDEFDAALDSPEVKAAL  153 (193)
T ss_dssp             TSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-ST-T--SSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHH
T ss_pred             CCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhc-ccCC--CCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHH
Confidence            00000 0122333222221 11111111     1122222 2233  334567888999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCceeeEEEECCe
Q 043871          174 LIYAAETERLKPPIQFVPWLTLNGD  198 (255)
Q Consensus       174 ~~~~~~T~~l~P~~~~VPwI~iNG~  198 (255)
                      .+..+....+  ++.-|||++|||+
T Consensus       154 ~~~~~~a~~~--gv~GvP~~vv~g~  176 (193)
T PF01323_consen  154 EEDTAEARQL--GVFGVPTFVVNGK  176 (193)
T ss_dssp             HHHHHHHHHT--TCSSSSEEEETTT
T ss_pred             HHHHHHHHHc--CCcccCEEEECCE
Confidence            9888888776  6899999999999

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.25  E-value=0.036  Score=49.81  Aligned_cols=170  Identities=16%  Similarity=0.152  Sum_probs=104.6

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceE--EEEEeeeeceeecCCccee------ecCC----------
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVN--LRLIPWGKAQIVEPNETIV------CEHG----------  101 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vd--l~lVP~GnA~~~~~~~~f~------CQHG----------  101 (255)
                      +..+++|+||..=.||.|--. ..-|..+.. .+.+.++  +.+.||=-.-.. ...+..      =.-|          
T Consensus         2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~-~~~~~~~v~i~w~pf~l~p~~-~~~g~~~~~~l~~k~g~~~~~~~~~~   78 (225)
T COG2761           2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALA-EYPQEVRVEIRWRPFELDPDL-PPEGLDRKEYLAQKYGISEEQKAAHA   78 (225)
T ss_pred             CCceEEEEEEeCCcCchhhcC-HHHHHHHHH-hcCcceeEEEEecccccCCCC-CcccccHHHHHHHHhCccHHHHHHHH
Confidence            467899999999999999433 334555554 4665444  445555322100 000000      0001          


Q ss_pred             -----hhh-----------hhcchhhhhhhhcccc-cc-chhhhhhhccccC----CCCCCchhhHHHHhHhhcCCChhh
Q 043871          102 -----EDE-----------CYFNVIHACAIKAWPE-QL-LHFTFIKCLEETS----WGPTLDKEKVWRTCCQNLKLSPNL  159 (255)
Q Consensus       102 -----p~E-----------C~gN~iqaCai~~~~~-~~-~~l~fI~Cm~~~~----~~~~~~~~~~~~~Ca~~~gl~~~~  159 (255)
                           -.|           =..|.+.||-+-++-. +. .+..|+.=+.+..    .++  +.......||.+.|+|.+.
T Consensus        79 ~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI--~D~dVL~diA~~~GLD~~~  156 (225)
T COG2761          79 RLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNI--GDEDVLADIAEEVGLDREE  156 (225)
T ss_pred             HHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCC--CcHHHHHHHHHHhCCCHHH
Confidence                 111           2335567776666531 22 4777777775433    233  4567889999999999999


Q ss_pred             hhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec-Cc--chhcHHHHHHHhcc
Q 043871          160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV-GP--DYGNFVKYVCEAYS  216 (255)
Q Consensus       160 I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~~--~~~nL~~~IC~~y~  216 (255)
                      +++=..++...+=+..-.+..+.+  .++-||+.+|+|.+- .-  ...-|...|=....
T Consensus       157 ~~~~L~s~~~~~avr~d~~~A~e~--gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~  214 (225)
T COG2761         157 FKADLASDAAKDAVRQDEAAAQEM--GIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA  214 (225)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHC--CCccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence            999888888887777777777765  799999999977662 21  23345555544443

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=95.09  E-value=0.052  Score=45.56  Aligned_cols=56  Identities=13%  Similarity=0.067  Sum_probs=48.6

Q ss_pred             hhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec
Q 043871          143 EKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV  200 (255)
Q Consensus       143 ~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  200 (255)
                      ......++.+.|+|.+.+.++.++.+.++.+.+..+....+  ++.-||+++|||+..
T Consensus       123 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~  178 (192)
T cd03022         123 PAVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF  178 (192)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence            34577899999999999999999999888888888877766  689999999999874

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.36  E-value=0.75  Score=40.48  Aligned_cols=149  Identities=15%  Similarity=0.112  Sum_probs=82.7

Q ss_pred             CceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccccc
Q 043871           42 EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQ  121 (255)
Q Consensus        42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~~  121 (255)
                      .+|.|.+|++-.||.|.+.+- .|...+. .-.+ +++.+++|=-..    ...-.|++      +-..-.|+.+.-.  
T Consensus        84 ~~v~v~~f~d~~Cp~C~~~~~-~l~~~~i-~~~~-~~~~~~~~~f~~----~~~~~~~~------a~~~~~~~~~~~~--  148 (244)
T COG1651          84 APVTVVEFFDYTCPYCKEAFP-ELKKKYI-DDGK-VRLVLREFPFLD----PACPYCRR------AAQAARCAADQGI--  148 (244)
T ss_pred             CCceEEEEecCcCccHHHHHH-HHHHHhh-hcCC-CceEEEEeecCC----CCcHHHHH------HHHHHHHhccccc--
Confidence            389999999999999955543 2333332 1222 244444442221    11111333      3334445554332  


Q ss_pred             cchhhhhhhccccCCCCCCchhhHHHHhHhhcCCC---h--hhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEEC
Q 043871          122 LLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLS---P--NLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLN  196 (255)
Q Consensus       122 ~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~---~--~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN  196 (255)
                      ..++.|..=+.....    .....+..|+......   .  .....|.+......+..++.+....+  .++..|+++||
T Consensus       149 ~~y~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~--gv~gTPt~~v~  222 (244)
T COG1651         149 VRYWAFHDALFGSQA----EAWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQL--GVNGTPTFIVN  222 (244)
T ss_pred             hhHHHHHHHHhhccc----cchhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhc--CCCcCCeEEEC
Confidence            457888777764331    2344556666543211   1  35666765455667777777666665  58999999999


Q ss_pred             CeecCcc--hhcHHHHH
Q 043871          197 GDAVGPD--YGNFVKYV  211 (255)
Q Consensus       197 G~~~~~~--~~nL~~~I  211 (255)
                      |..+...  ...|...|
T Consensus       223 ~~~~~g~~~~~~l~~~i  239 (244)
T COG1651         223 GKLVPGLPDLDELKAII  239 (244)
T ss_pred             CeeecCCCCHHHHHHHH
Confidence            9854322  34444443

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=87.21  E-value=0.94  Score=32.59  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             EEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871           46 LSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA   87 (255)
Q Consensus        46 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA   87 (255)
                      |.+|+.-.||.|..+. .+|.+... ...+.++++++|+.-.
T Consensus         1 i~~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~   40 (98)
T cd02972           1 IVEFFDPLCPYCYLFE-PELEKLLY-ADDGGVRVVYRPFPLL   40 (98)
T ss_pred             CeEEECCCCHhHHhhh-HHHHHHHh-hcCCcEEEEEeccccC
Confidence            5689999999999995 45777653 4567899999998766

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=86.36  E-value=1.5  Score=39.70  Aligned_cols=44  Identities=18%  Similarity=0.120  Sum_probs=34.0

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA   87 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA   87 (255)
                      .+.+..|.||..-.||+|++|-. .+.|..+  . .-|.++++|++--
T Consensus       115 ~~ak~~I~vFtDp~CpyC~kl~~-~l~~~~~--~-g~V~v~~ip~~~l  158 (251)
T PRK11657        115 ADAPRIVYVFADPNCPYCKQFWQ-QARPWVD--S-GKVQLRHILVGII  158 (251)
T ss_pred             CCCCeEEEEEECCCChhHHHHHH-HHHHHhh--c-CceEEEEEecccc
Confidence            46778999999999999999964 4677654  2 3488899998643

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=86.28  E-value=9.1  Score=34.17  Aligned_cols=43  Identities=9%  Similarity=0.159  Sum_probs=29.8

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA   87 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA   87 (255)
                      .+.++.|.+|..-.||+|+++-. +|....+    .-+.+.+++|...
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~-~l~~~~~----~~v~v~~~~~P~~  147 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHE-QMKDYNA----LGITVRYLAFPRQ  147 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHH-HHHHHhc----CCeEEEEEeccCC
Confidence            35678899999999999999953 3443321    1267777766543

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=84.92  E-value=1.6  Score=35.58  Aligned_cols=45  Identities=20%  Similarity=0.223  Sum_probs=26.2

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA   87 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA   87 (255)
                      ...++++-|+.|+=||||++++= .|..+.+  ....++++++.-...
T Consensus        39 ~~~~~~ilvi~e~WCgD~~~~vP-~l~kiae--~~p~i~~~~i~rd~~   83 (129)
T PF14595_consen   39 IQKPYNILVITETWCGDCARNVP-VLAKIAE--ANPNIEVRIILRDEN   83 (129)
T ss_dssp             --S-EEEEEE--TT-HHHHHHHH-HHHHHHH--H-TTEEEEEE-HHHH
T ss_pred             cCCCcEEEEEECCCchhHHHHHH-HHHHHHH--hCCCCeEEEEEecCC
Confidence            45678999999999999999852 2333333  345788988875433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	98.59
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	98.55
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.52
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.4
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.33
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.33
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.33
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	98.3
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.19
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.18
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	98.16
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	97.84
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.82
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.71
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	97.69
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	97.67
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.66
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.59
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	97.48
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	97.18
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	96.99
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.91
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	96.33
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	96.14
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	94.58
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	88.28
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	84.06
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	82.57

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=98.59  E-value=6.5e-07  Score=76.30  Aligned_cols=164  Identities=16%  Similarity=0.164  Sum_probs=110.7

Q ss_pred             CCcC-CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhcc--CceEEEEEeeeeceeecCCcceeecCChhhhhcchhhh
Q 043871           36 PTVK-QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLT--SIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHA  112 (255)
Q Consensus        36 ~~~~-~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqa  112 (255)
                      |.++ .+.+|.|..|+.=.||+|++|- ..+.|.+.+.+.  ..|.|.++||--             ||+.-=.+-..-.
T Consensus        22 ~~~G~~~a~vtvvef~D~~CP~C~~~~-~~~~~~l~~~~~~~g~v~~~~~~~p~-------------~~~~s~~Aa~aa~   87 (202)
T 3gha_A           22 PVLGKDDAPVTVVEFGDYKCPSCKVFN-SDIFPKIQKDFIDKGDVKFSFVNVMF-------------HGKGSRLAALASE   87 (202)
T ss_dssp             CEESCTTCSEEEEEEECTTCHHHHHHH-HHTHHHHHHHTTTTTSEEEEEEECCC-------------SHHHHHHHHHHHH
T ss_pred             ceecCCCCCEEEEEEECCCChhHHHHH-HHhhHHHHHHhccCCeEEEEEEecCc-------------cchhHHHHHHHHH
Confidence            3443 5679999999999999999995 456776654453  367777777632             2222111222223


Q ss_pred             hhhhccccccchhhhhhhccccCCCCCC--chhhHHHHhHhh-cCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCce
Q 043871          113 CAIKAWPEQLLHFTFIKCLEETSWGPTL--DKEKVWRTCCQN-LKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQF  189 (255)
Q Consensus       113 Cai~~~~~~~~~l~fI~Cm~~~~~~~~~--~~~~~~~~Ca~~-~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~  189 (255)
                      |+-..  ++..+++|..=+........+  .........+++ .|+|.+.+.+|.++......+.+..+....+  +++-
T Consensus        88 a~~~~--~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--gV~g  163 (202)
T 3gha_A           88 EVWKE--DPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKM--NIQA  163 (202)
T ss_dssp             HHHHH--CGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHT--TCCS
T ss_pred             HHHhh--CHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCc
Confidence            33322  456778888877643221100  123456788888 8999999999999888777777777777766  6899


Q ss_pred             eeEEEECCeecCc--chhcHHHHHHHhccC
Q 043871          190 VPWLTLNGDAVGP--DYGNFVKYVCEAYSG  217 (255)
Q Consensus       190 VPwI~iNG~~~~~--~~~nL~~~IC~~y~g  217 (255)
                      +|+++|||+.+..  ....|...|=...++
T Consensus       164 tPtfvvnG~~~~G~~~~e~l~~~i~~~~~~  193 (202)
T 3gha_A          164 TPTIYVNDKVIKNFADYDEIKETIEKELKG  193 (202)
T ss_dssp             SCEEEETTEECSCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEECCEEecCCCCHHHHHHHHHHHHHh
Confidence            9999999998653  456777777665554

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=98.55  E-value=1.8e-06  Score=71.50  Aligned_cols=158  Identities=15%  Similarity=0.109  Sum_probs=100.1

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhcc--CceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLT--SIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKA  117 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~  117 (255)
                      .+.+|.|.+|+.-.||+|.+|- ..|.+.+.+++.  ..+.|.+.||.-.             |+.-=...+.-.|+-..
T Consensus         9 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~l~~~~~~~~~v~~~~~~~p~~-------------~~~s~~aa~a~~~a~~~   74 (186)
T 3bci_A            9 KNGKPLVVVYGDYKCPYCKELD-EKVMPKLRKNYIDNHKVEYQFVNLAFL-------------GKDSIVGSRASHAVLMY   74 (186)
T ss_dssp             --CCCEEEEEECTTCHHHHHHH-HHHHHHHHHHTTTTTSSEEEEEECCCS-------------CTTHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEECCCChhHHHHH-HHHHHHHHHHhccCCeEEEEEEecCcC-------------CcchHHHHHHHHHHHHh
Confidence            4568999999999999999995 446666543454  3588888887421             22111222333444433


Q ss_pred             cccccchhhhhhhccccCCCCC--CchhhHHHHhHhhcCCChhh---hhhhh--cCchhHHHHHHHHHHhhhcCCCCcee
Q 043871          118 WPEQLLHFTFIKCLEETSWGPT--LDKEKVWRTCCQNLKLSPNL---IKDCY--DNGTGRWLELIYAAETERLKPPIQFV  190 (255)
Q Consensus       118 ~~~~~~~l~fI~Cm~~~~~~~~--~~~~~~~~~Ca~~~gl~~~~---I~~C~--~s~~G~~Ll~~~~~~T~~l~P~~~~V  190 (255)
                      -  +...+.|..=+........  ..........+++.|+|.+.   +.+|.  ++......+.+..+....+  ++.-+
T Consensus        75 ~--~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~Gt  150 (186)
T 3bci_A           75 A--PKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDN--HIKTT  150 (186)
T ss_dssp             C--GGGHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHT--TCCSS
T ss_pred             C--HHHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc--CCCCC
Confidence            2  2345666555543221100  02245667888999999998   99999  8887777777776666665  68999


Q ss_pred             eEEEECCeecCc--chhcHHHHHHHhc
Q 043871          191 PWLTLNGDAVGP--DYGNFVKYVCEAY  215 (255)
Q Consensus       191 PwI~iNG~~~~~--~~~nL~~~IC~~y  215 (255)
                      |+++|||+.+..  ....|...|=...
T Consensus       151 Pt~vvnG~~~~G~~~~~~l~~~i~~~~  177 (186)
T 3bci_A          151 PTAFINGEKVEDPYDYESYEKLLKDKI  177 (186)
T ss_dssp             SEEEETTEECSCTTCHHHHHHHHHC--
T ss_pred             CeEEECCEEcCCCCCHHHHHHHHHHHH
Confidence            999999998643  3456666664443

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.52  E-value=3.2e-06  Score=68.87  Aligned_cols=148  Identities=11%  Similarity=0.041  Sum_probs=99.7

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      ...+|.|.+|+...||+|++|. ..|.+++. +..+ +.|.++++.-.             |+.-=...+.-.|+...  
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~-~~~~-v~~~~~~~p~~-------------~~~s~~aa~~~~~a~~~--   81 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAM-AEVQGLVD-ADPN-VRLVYREWPIL-------------GEGSDFAARAALAARQQ--   81 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-HHHHHHHH-HCTT-EEEEEEECCCS-------------CHHHHHHHHHHHHGGGG--
T ss_pred             CCCCEEEEEEECCCCccHHHHH-HHHHHHHH-hCCC-EEEEEEeCCCC-------------CCChHHHHHHHHHHHHH--
Confidence            5678999999999999999996 45777766 3556 77777666322             12111122222333322  


Q ss_pred             cccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCee
Q 043871          120 EQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA  199 (255)
Q Consensus       120 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  199 (255)
                        ..++.|..=+.......   ........+++.|++.+.+.+|.++......+.+..+....+  ++.-+|+++|||+.
T Consensus        82 --~~~~~~~~~lf~~~~~~---~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~i~g~~  154 (175)
T 3gyk_A           82 --GKYEAFHWALMGMSGKA---NETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKL--GFNGTPSFVVEDAL  154 (175)
T ss_dssp             --TCHHHHHHHHHTCSSCC---SHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHH--TCCSSSEEEETTEE
T ss_pred             --hHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCccCCEEEECCEE
Confidence              33455554444322222   244567789999999999999999999999888888888776  58999999999987


Q ss_pred             cCc--chhcHHHHHH
Q 043871          200 VGP--DYGNFVKYVC  212 (255)
Q Consensus       200 ~~~--~~~nL~~~IC  212 (255)
                      ...  ....|.+.|=
T Consensus       155 ~~G~~~~~~l~~~i~  169 (175)
T 3gyk_A          155 VPGFVEQSQLQDAVD  169 (175)
T ss_dssp             ECSCCCHHHHHHHHH
T ss_pred             eeCCCCHHHHHHHHH
Confidence            542  3455555553

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.40  E-value=2.4e-06  Score=70.85  Aligned_cols=138  Identities=9%  Similarity=-0.044  Sum_probs=91.6

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      ...+|.|..|+...||.|++|.. .|.. +.++..+.+.|+.+|....             +... ...+.-.|+-.   
T Consensus        23 ~~~~~~i~~f~d~~Cp~C~~~~~-~l~~-l~~~~~~~v~~~~~p~~~~-------------~~~~-~aa~a~~aa~~---   83 (192)
T 3h93_A           23 QPGKIEVVELFWYGCPHCYAFEP-TIVP-WSEKLPADVHFVRLPALFG-------------GIWN-VHGQMFLTLES---   83 (192)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHH-HHHH-HHHTCCTTEEEEEEECCCS-------------THHH-HHHHHHHHHHH---
T ss_pred             CCCCCEEEEEECCCChhHHHhhH-HHHH-HHHhCCCCeEEEEEehhhc-------------cchH-HHHHHHHHHHH---
Confidence            46789999999999999999964 3443 4335677777887775211             1000 01111222221   


Q ss_pred             cccchhhhhhhcccc----CCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEE
Q 043871          120 EQLLHFTFIKCLEET----SWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTL  195 (255)
Q Consensus       120 ~~~~~l~fI~Cm~~~----~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~i  195 (255)
                       ....++|..=+...    ....  .........+.+.|+|.+.+.+|.++......+.+..+....+  ++.-+|+++|
T Consensus        84 -~g~~~~~~~~lf~~~~~~~~~~--~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~v  158 (192)
T 3h93_A           84 -MGVEHDVHNAVFEAIHKEHKKL--ATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAY--QVTGVPTMVV  158 (192)
T ss_dssp             -HTCCHHHHHHHHHHHHTSCCCC--CSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHH--TCCSSSEEEE
T ss_pred             -cCCHHHHHHHHHHHHHHhCcCC--CCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCCCCeEEE
Confidence             12334444444321    1122  2355677889999999999999999999888888888777776  6899999999


Q ss_pred             CCeecC
Q 043871          196 NGDAVG  201 (255)
Q Consensus       196 NG~~~~  201 (255)
                      ||++..
T Consensus       159 ng~~~~  164 (192)
T 3h93_A          159 NGKYRF  164 (192)
T ss_dssp             TTTEEE
T ss_pred             CCEEEe
Confidence            999753

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.33  E-value=7.7e-06  Score=67.47  Aligned_cols=147  Identities=11%  Similarity=-0.012  Sum_probs=94.8

Q ss_pred             CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhcccc
Q 043871           41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPE  120 (255)
Q Consensus        41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~  120 (255)
                      ..+|.|.+|+...||.|..|.. .|.++.+ +..+.|.++.+|+...    .+.       .   ...+.-.|+-..   
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~-~l~~l~~-~~~~~v~~~~~p~~~~----~~s-------~---~a~~a~~~a~~~---   84 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDS-KLQAWGA-RQAKDVRFTLVPAVFG----GVW-------D---PFARAYLAADVL---   84 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHH-HHHHHHH-TSCTTEEEEEEECCCS----TTH-------H---HHHHHHHHHHHT---
T ss_pred             CCCeEEEEEECCCChhHhhhhH-HHHHHHH-hcCCceEEEEeCcccC----CCc-------H---HHHHHHHHHHHc---
Confidence            5789999999999999999964 4666655 4666688888887321    110       0   111122222211   


Q ss_pred             ccchhhhhhhcccc----CC---CCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEE
Q 043871          121 QLLHFTFIKCLEET----SW---GPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWL  193 (255)
Q Consensus       121 ~~~~l~fI~Cm~~~----~~---~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI  193 (255)
                       ...++|..-+...    ..   ..  .........+++.|+|.+.+.+|.++......+.+..+....+  +++-+|++
T Consensus        85 -~~~~~~~~~lf~~~~~~~~~~~~~--~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~  159 (193)
T 2rem_A           85 -GVAKRSHTAMFEAIHEKGSVPIQN--VGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKV--RPVGTPTI  159 (193)
T ss_dssp             -TCHHHHHHHHHHHHHTTCCSCSTT--CCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--CCSSSSEE
T ss_pred             -CcHHHHHHHHHHHHHHhcccCcCC--CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHh--CCCCCCeE
Confidence             2234444333321    11   11  2345667889999999999999999988888888777777666  68999999


Q ss_pred             EECCeec-C-cchhcHHHHH
Q 043871          194 TLNGDAV-G-PDYGNFVKYV  211 (255)
Q Consensus       194 ~iNG~~~-~-~~~~nL~~~I  211 (255)
                      +|||+.. . .....|.+.|
T Consensus       160 ving~~~~~g~~~~~l~~~i  179 (193)
T 2rem_A          160 VVNGRYMVTGHDFEDTLRIT  179 (193)
T ss_dssp             EETTTEEECCSSHHHHHHHH
T ss_pred             EECCEEEecCCCHHHHHHHH
Confidence            9999864 2 1234455444

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.33  E-value=1.4e-05  Score=66.39  Aligned_cols=136  Identities=8%  Similarity=-0.049  Sum_probs=89.1

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      ...+|.|.+|+...||.|++|. ..|..+.+ .+.+.+.|..+|.-..    .+.          =...+.-.|+...- 
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~-~~l~~l~~-~~~~~v~~~~~~~~~~----~~s----------~~aa~a~~aa~~~g-   85 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIE-PMVEDWAK-TAPQDVVLKQVPIAFN----AGM----------KPLQQLYYTLQALE-   85 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHH-HHHHHHHH-TCCTTEEEEEEECCSS----GGG----------HHHHHHHHHHHHTT-
T ss_pred             CCCCeEEEEEECCCCccHHHhh-HHHHHHHH-HCCCCeEEEEEecccC----cch----------HHHHHHHHHHHhcC-
Confidence            5688999999999999999995 33444443 5666677777775321    000          01112222222111 


Q ss_pred             cccchhhhhhhccc----cCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEE
Q 043871          120 EQLLHFTFIKCLEE----TSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTL  195 (255)
Q Consensus       120 ~~~~~l~fI~Cm~~----~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~i  195 (255)
                          .++|..=+..    .....  .........+++.|+|.+.+.+|.++.+.+..+.+..+....+  ++.-+|+++|
T Consensus        86 ----~~~~~~~lf~~~~~~~~~~--~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPt~vi  157 (195)
T 3hd5_A           86 ----RPDLHPKVFTAIHTERKRL--FDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAA--HIDGTPAFAV  157 (195)
T ss_dssp             ----CTTHHHHHHHHHHTSCCCC--CSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHT--TCCSSSEEEE
T ss_pred             ----HHHHHHHHHHHHHHhccCC--CCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCceEEE
Confidence                1222222211    11122  2345677889999999999999999999898888888888776  6899999999


Q ss_pred             CCeec
Q 043871          196 NGDAV  200 (255)
Q Consensus       196 NG~~~  200 (255)
                      ||+..
T Consensus       158 ng~~~  162 (195)
T 3hd5_A          158 GGRYM  162 (195)
T ss_dssp             TTTEE
T ss_pred             CCEEE
Confidence            99974

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.33  E-value=8.7e-06  Score=66.11  Aligned_cols=153  Identities=10%  Similarity=0.047  Sum_probs=90.4

Q ss_pred             CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhcccc
Q 043871           41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPE  120 (255)
Q Consensus        41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~  120 (255)
                      ..++.|..|+.=.||+|++|- ..+.++.+ +..+.+.+.++|+--..            ++..=..-+..+|+...-..
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~-~~~~~l~~-~~~~~~~~~~~~~~~~~------------~~~~~~~a~a~~~~~~~~~~   85 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFE-PIIAQLKQ-QLPEGAKFQKNHVSFMG------------GNMGQAMSKAYATMIALEVE   85 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHH-HHHHHHHH-TSCTTCEEEEEECSSSS------------GGGHHHHHHHHHHHHHHTCH
T ss_pred             CCCCEEEEEECCCCHhHHHHh-HHHHHHHh-hcCCceEEEEEecCCCC------------CchHHHHHHHHHHHHHcCcH
Confidence            356778889999999999994 45666655 57777777776652210            00000001111222211111


Q ss_pred             ccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec
Q 043871          121 QLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV  200 (255)
Q Consensus       121 ~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  200 (255)
                      ...+..+..=+.......  ........=+...|+|.+.+.+|.++..-...+.+..+....+  +++-+|+++|||++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gTPtfiINGky~  161 (184)
T 4dvc_A           86 DKMVPVMFNRIHTLRKPP--KDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDS--GLTGVPAVVVNNRYL  161 (184)
T ss_dssp             HHHHHHHHHHHHTSCCCC--SSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--TCCSSSEEEETTTEE
T ss_pred             HHHHHHHHHHHHHHhhcc--chHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEECCEEe
Confidence            111111111111111111  2344556678889999999999999988888888877777776  689999999999864


Q ss_pred             C-----cchhcHHHHH
Q 043871          201 G-----PDYGNFVKYV  211 (255)
Q Consensus       201 ~-----~~~~nL~~~I  211 (255)
                      -     ..+++|.+.|
T Consensus       162 v~~~~~~s~e~~~~~i  177 (184)
T 4dvc_A          162 VQGQSAKSLDEYFDLV  177 (184)
T ss_dssp             ECGGGCSSHHHHHHHH
T ss_pred             eCCcCCCCHHHHHHHH
Confidence            2     1245566555

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=98.30  E-value=7.7e-06  Score=71.14  Aligned_cols=154  Identities=10%  Similarity=0.022  Sum_probs=100.1

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhcc--CceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLT--SIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKA  117 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~  117 (255)
                      .+.+|.|.+|..=.||+|++|-. .+.|.+.+++.  ..|.|.+.+|--.              +.--.+-+.-.|+   
T Consensus        37 ~~A~vtIvef~Dy~CP~C~~~~~-~~~~~l~~~~~~~g~V~~v~~~~p~~--------------~~s~~Aa~aa~aa---   98 (226)
T 3f4s_A           37 PKAPILMIEYASLTCYHCSLFHR-NVFPKIKEKYIDTGKMLYIFRHFPLD--------------YRGLKAAMLSHCY---   98 (226)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HTHHHHHHHHTTTTSEEEEEEECCCS--------------HHHHHHHHHGGGC---
T ss_pred             CCCCEEEEEEECCCCHHHHHHHH-HHHHHHHHHcccCCeEEEEEEeCCCC--------------hhHHHHHHHHHHh---
Confidence            56789999999999999999954 35565543342  3566666655210              1111122223333   


Q ss_pred             cccccchhhhhhhccccCCCCC---CchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhh-cCCCCceeeEE
Q 043871          118 WPEQLLHFTFIKCLEETSWGPT---LDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETER-LKPPIQFVPWL  193 (255)
Q Consensus       118 ~~~~~~~l~fI~Cm~~~~~~~~---~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~-l~P~~~~VPwI  193 (255)
                       .++..+++|..=+........   ..........++..|+|.+.+.+|.++......+.+..+.... +  +++-+|++
T Consensus        99 -~~~~~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~--GV~GtPtf  175 (226)
T 3f4s_A           99 -EKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKL--GITAVPIF  175 (226)
T ss_dssp             -CSHHHHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHH--CCCSSCEE
T ss_pred             -hChHHHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHc--CCCcCCEE
Confidence             234556777666653211110   0134567788999999999999999998888877777777666 6  68999999


Q ss_pred             EE---CCeecCc--c--------hhcHHHHHHHh
Q 043871          194 TL---NGDAVGP--D--------YGNFVKYVCEA  214 (255)
Q Consensus       194 ~i---NG~~~~~--~--------~~nL~~~IC~~  214 (255)
                      +|   ||+.+..  .        ...|.+.|=..
T Consensus       176 vv~~~nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~  209 (226)
T 3f4s_A          176 FIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKL  209 (226)
T ss_dssp             EEEECCTTCCCCGGGGEEESCCCHHHHHHHHHHH
T ss_pred             EEEcCCCEEeeCCCCcccccccCHHHHHHHHHHH
Confidence            99   9997642  2        45666665443

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.19  E-value=3.3e-05  Score=64.81  Aligned_cols=152  Identities=13%  Similarity=0.062  Sum_probs=92.2

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      ...+|.|..|+.-.||.|++|- ..|..+.+ ++.+.+.|..+|....             |.. =...+.-.|+...-.
T Consensus        22 ~~~~v~vv~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~v~~~~~p~~~~-------------~~~-~~aa~a~~aa~~~g~   85 (193)
T 3hz8_A           22 QAGKVEVLEFFGYFCPHCAHLE-PVLSKHAK-SFKDDMYLRTEHVVWQ-------------KEM-LTLARLAAAVDMAAA   85 (193)
T ss_dssp             STTSEEEEEEECTTCHHHHHHH-HHHHHHHT-TCCTTEEEEEEECCCS-------------GGG-HHHHHHHHHHHHHTG
T ss_pred             CCCCcEEEEEECCCChhHHHHH-HHHHHHHH-HCCCCeEEEEecCCCC-------------ccc-HHHHHHHHHHHHcCc
Confidence            4578999999999999999995 34444433 5667677777776321             111 011222233322211


Q ss_pred             ccc--chhhhhhhccccCCCCCCchhhHHHHhHhhc-CCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEEC
Q 043871          120 EQL--LHFTFIKCLEETSWGPTLDKEKVWRTCCQNL-KLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLN  196 (255)
Q Consensus       120 ~~~--~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~-gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN  196 (255)
                      ...  ..-.+..=+.......  ........-+.+. |+|.+.+.+|.++......+.+..+....+  +++-+|+++||
T Consensus        86 ~~~~~~~~~lf~a~~~~~~~~--~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPt~vvn  161 (193)
T 3hz8_A           86 DSKDVANSHIFDAMVNQKIKL--QNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETF--QIDGVPTVIVG  161 (193)
T ss_dssp             GGHHHHHHHHHHHHHTSCCCT--TSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHHHHT--TCCSSSEEEET
T ss_pred             hhHHhHHHHHHHHHHHhCcCC--CCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCCEEEEC
Confidence            100  0000111111111122  2345567788888 999999999999988888888887777766  68999999999


Q ss_pred             CeecCc--chhcHHHHH
Q 043871          197 GDAVGP--DYGNFVKYV  211 (255)
Q Consensus       197 G~~~~~--~~~nL~~~I  211 (255)
                      |++...  ....|.+.|
T Consensus       162 g~~~~~~~~~e~l~~~i  178 (193)
T 3hz8_A          162 GKYKVEFADWESGMNTI  178 (193)
T ss_dssp             TTEEECCSSHHHHHHHH
T ss_pred             CEEEecCCCHHHHHHHH
Confidence            997532  334454444

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.18  E-value=9.9e-06  Score=67.03  Aligned_cols=136  Identities=15%  Similarity=0.053  Sum_probs=90.7

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      ...+|.|.+|+...||+|.+|.. .|..+.+ ...+.+.++.+|....             +.. -...+.-.|+-.   
T Consensus        20 ~~~~~~i~~f~d~~Cp~C~~~~~-~l~~l~~-~~~~~v~~~~~p~~~~-------------~~s-~~aa~a~~aa~~---   80 (195)
T 2znm_A           20 QSGKIEVLEFFGYFCVHCHHFDP-LLLKLGK-ALPSDAYLRTEHVVWQ-------------PEM-LGLARMAAAVNL---   80 (195)
T ss_dssp             SSSSEEEEEEECTTSCCTTSSCH-HHHHHHH-HSCTTEEEEEEECCCS-------------GGG-HHHHHHHHHHHH---
T ss_pred             CCCCcEEEEEECCCChhHHHHhH-HHHHHHH-HCCCceEEEEeccccC-------------ccc-HHHHHHHHHHHH---
Confidence            45789999999999999999964 4666555 4556678888775211             000 011222223321   


Q ss_pred             cccchhhhhhhcccc----CCCCCCchhhHHHHhHhhc-CCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEE
Q 043871          120 EQLLHFTFIKCLEET----SWGPTLDKEKVWRTCCQNL-KLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLT  194 (255)
Q Consensus       120 ~~~~~l~fI~Cm~~~----~~~~~~~~~~~~~~Ca~~~-gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~  194 (255)
                       ....+.|..-+...    ....  .........+++. |++.+.+.+|.++.+....+.+..+....+  ++.-+|+++
T Consensus        81 -~~~~~~~~~~lf~~~~~~~~~~--~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~v  155 (195)
T 2znm_A           81 -SGLKYQANPAVFKAVYEQKIRL--ENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQY--RIDSTPTVI  155 (195)
T ss_dssp             -HTCHHHHHHHHHHHHHHCSSCT--TSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEE
T ss_pred             -cCcHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHc--CCCCCCeEE
Confidence             12344555444321    1111  2345667888999 999999999999988888888877777766  689999999


Q ss_pred             ECCee
Q 043871          195 LNGDA  199 (255)
Q Consensus       195 iNG~~  199 (255)
                      |||+.
T Consensus       156 ing~~  160 (195)
T 2znm_A          156 VGGKY  160 (195)
T ss_dssp             ETTTE
T ss_pred             ECCEE
Confidence            99986

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=98.16  E-value=1.6e-05  Score=68.18  Aligned_cols=153  Identities=10%  Similarity=0.106  Sum_probs=101.9

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhc--cCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDL--TSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKA  117 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l--~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~  117 (255)
                      .+.+|.|.+|..-.||+|++|- ..+.|.+.+++  .+.|.|.+.+|-   .          |+... .+-..-.|+   
T Consensus        13 ~~a~vtivef~D~~Cp~C~~~~-~~~~~~l~~~~i~~g~v~~v~r~~p---l----------~~~s~-~aa~aa~~~---   74 (205)
T 3gmf_A           13 PAAKLRLVEFVSYTCPHCSHFE-IESEGQLKIGMVQPGKGAIEVRNFV---R----------DPIDM-TVALITNCV---   74 (205)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-HHHHHHHHHHTTTTTSEEEEEEECC---C----------SHHHH-HHHHHHHHS---
T ss_pred             CCCCeEEEEEECCCCHHHHHHH-HHHHHHHHHHhccCCeEEEEEEeCC---C----------CcchH-HHHHHHHhc---
Confidence            5688999999999999999996 45778776334  356777766661   1          11111 122222343   


Q ss_pred             cccccchhhhhhhccccCC-------CCCCch-------------------hhHHHHhHhhcCCChhhhhhhhcCchhHH
Q 043871          118 WPEQLLHFTFIKCLEETSW-------GPTLDK-------------------EKVWRTCCQNLKLSPNLIKDCYDNGTGRW  171 (255)
Q Consensus       118 ~~~~~~~l~fI~Cm~~~~~-------~~~~~~-------------------~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~  171 (255)
                        .+.++++|..=++....       ... +.                   .......+...|+|.+.+.+|.++.....
T Consensus        75 --~~~~f~~~~~~Lf~~q~~~~~~~~~~~-~~~~~~w~~~~~~~~l~~ia~~~~L~~~a~~~Gld~~~~~~~l~s~~~~~  151 (205)
T 3gmf_A           75 --PPSRFFTLHTAFMRSQAQWIGPLANST-EAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEALAK  151 (205)
T ss_dssp             --CHHHHHHHHHHHHHTHHHHCHHHHHCC-HHHHHTTSSSCHHHHHHHHHHHTTHHHHHHTTTCCHHHHHHHHTCHHHHH
T ss_pred             --CHhHHHHHHHHHHHcCHHHHhcccccc-hhhhhccccchhHHHHHhccCHHHHHHHHHHcCCCHHHHHHHHcCHHHHH
Confidence              35678888887764321       010 00                   01245678889999999999999988777


Q ss_pred             HHHHHHHHh-hhcCCCCceeeEEEECCeecCc--chhcHHHHHHHhc
Q 043871          172 LELIYAAET-ERLKPPIQFVPWLTLNGDAVGP--DYGNFVKYVCEAY  215 (255)
Q Consensus       172 Ll~~~~~~T-~~l~P~~~~VPwI~iNG~~~~~--~~~nL~~~IC~~y  215 (255)
                      .+.+..+.. ..+  +++-+|+++|||+.+.-  ....|.+.|=...
T Consensus       152 ~v~~~~~~a~~~~--GV~GtPtfvvng~~~~G~~~~e~l~~~i~~~~  196 (205)
T 3gmf_A          152 KLAAETDEAINQY--NVSGTPSFMIDGILLAGTHDWASLRPQILARL  196 (205)
T ss_dssp             HHHHHHHHHHHHH--CCCSSSEEEETTEECTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCccCCEEEECCEEEeCCCCHHHHHHHHHHHh
Confidence            777766666 665  68999999999998652  3567777665443

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=97.84  E-value=0.00012  Score=61.28  Aligned_cols=167  Identities=10%  Similarity=0.069  Sum_probs=98.8

Q ss_pred             CceEEEEEEEeCChhHHHHHHHhhHHHHHhhccC-ceEEEEEeeeeceeecCC-------------------cceeecCC
Q 043871           42 EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTS-IVNLRLIPWGKAQIVEPN-------------------ETIVCEHG  101 (255)
Q Consensus        42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d-~vdl~lVP~GnA~~~~~~-------------------~~f~CQHG  101 (255)
                      ++|+|++|+.-.||.|..+  .++.+.+.. +.+ -++|+++||+-.......                   .++.-...
T Consensus         6 ~~~~I~~f~D~~CP~C~~~--~~~~~~l~~-~~~~~v~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~a~~~g~~~~~~   82 (216)
T 2in3_A            6 EKPVLWYIADPMCSWCWGF--APVIENIRQ-EYSAFLTVKIMPGGLRPGTNTPLLPEKRAQILHHWHSVHITTGQPFTFE   82 (216)
T ss_dssp             CCCEEEEEECTTCHHHHHH--HHHHHHHHH-HHTTTCEEEEEECC----CCSBCCHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             cceeEEEEECCCCchhhcc--hHHHHHHHh-cCCCCeEEEEeecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCccChH
Confidence            4589999999999999833  455565553 333 489999998754211000                   00000000


Q ss_pred             ---hhhhhcchhhhhhhhcc-cc--ccchhhhhhhcccc----CCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHH
Q 043871          102 ---EDECYFNVIHACAIKAW-PE--QLLHFTFIKCLEET----SWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRW  171 (255)
Q Consensus       102 ---p~EC~gN~iqaCai~~~-~~--~~~~l~fI~Cm~~~----~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~  171 (255)
                         +..=..|...++.+-.. ..  +...++|..=+...    +..+  .........+++.|+|.+.+.+|.++.+.+.
T Consensus        83 ~~~~~~~~~~s~~a~r~~~~a~~~~~~~~~~~~~~lf~a~~~~~~~~--~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~  160 (216)
T 2in3_A           83 NALPEGFIYDTEPACRGVVSVSLIEPEKVFPFFAAIQRAFYVGQEDV--AQLAILKKLAVDLGIPESRFTPVFQSDEAKQ  160 (216)
T ss_dssp             TCSCTTCBCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTTCCCT--TSHHHHHHHHHHTTCCHHHHHHHHHSHHHHH
T ss_pred             HHccCCcccCcHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCHHHHHHHhcchHHHH
Confidence               01112233333322111 11  14456666655531    2222  2345667889999999999999999988888


Q ss_pred             HHHHHHHHhhhcCCCCceeeEEEE--CCee---cC--cchhcHHHHHHHhc
Q 043871          172 LELIYAAETERLKPPIQFVPWLTL--NGDA---VG--PDYGNFVKYVCEAY  215 (255)
Q Consensus       172 Ll~~~~~~T~~l~P~~~~VPwI~i--NG~~---~~--~~~~nL~~~IC~~y  215 (255)
                      .+.+..+....+  ++.-+|+++|  ||++   ..  .....|...+=...
T Consensus       161 ~v~~~~~~a~~~--gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          161 RTLAGFQRVAQW--GISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHHHHHHHHT--TCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            888877777665  6899999998  9986   22  22455666554433

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.82  E-value=0.00013  Score=60.93  Aligned_cols=139  Identities=8%  Similarity=-0.050  Sum_probs=87.2

Q ss_pred             ceEEEEEEEeCChhHHHHHHHh-hHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccccc
Q 043871           43 KVNLSVYYESLSDTGAEFITHD-LGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQ  121 (255)
Q Consensus        43 kV~V~vYyESlCPd~~~Fi~~q-L~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~~  121 (255)
                      ++.|..|+--.||.|++|-... +.+.+.+.+.+.+.|.++|+---   .+..       .   ..-+.-.|+...- ..
T Consensus        15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~s-------~---~aa~a~~aA~~~g-~~   80 (189)
T 3l9v_A           15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLL---GPLG-------H---ELTRAWALAMVMK-ET   80 (189)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSS---STTH-------H---HHHHHHHHHHHHT-CH
T ss_pred             CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechhc---cccc-------H---HHHHHHHHHHHcC-cH
Confidence            5678889999999999995432 34666555666677777776321   0110       0   1111122333221 11


Q ss_pred             cchh-hhhhhccccCCCCCCchhhHHHHhHhhc-CCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCee
Q 043871          122 LLHF-TFIKCLEETSWGPTLDKEKVWRTCCQNL-KLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA  199 (255)
Q Consensus       122 ~~~l-~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~-gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  199 (255)
                      .... .+..=+..... .  .........+.+. |+|.+.+.+|.++......+.+..+....+  +++-+|+++|||++
T Consensus        81 ~~~~~~lf~a~~~~~~-~--~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~GtPt~~vng~~  155 (189)
T 3l9v_A           81 DVIEKAFFTAGMVEKR-L--HSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQERLFKEY--GVRGTPSVYVRGRY  155 (189)
T ss_dssp             HHHHHHHHHHHTTTCC-C--CSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTE
T ss_pred             HHHHHHHHHHHhhhcc-C--CCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHh--CCCccCEEEECCEE
Confidence            1111 12122221111 2  2345677888899 999999999999988888888887777766  68999999999987


Q ss_pred             c
Q 043871          200 V  200 (255)
Q Consensus       200 ~  200 (255)
                      .
T Consensus       156 ~  156 (189)
T 3l9v_A          156 H  156 (189)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.71  E-value=0.00026  Score=59.54  Aligned_cols=138  Identities=9%  Similarity=0.008  Sum_probs=85.7

Q ss_pred             CceEEEEEEEeCChhHHHHHHHh-hHHHHHhhccCceEEEEEeeeeceeecCCcceeec-CChhhhhcc--hhhhhhhhc
Q 043871           42 EKVNLSVYYESLSDTGAEFITHD-LGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCE-HGEDECYFN--VIHACAIKA  117 (255)
Q Consensus        42 ~kV~V~vYyESlCPd~~~Fi~~q-L~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQ-HGp~EC~gN--~iqaCai~~  117 (255)
                      .+|.|..|+.-.||.|++|-... ..|.+.+.+.+-+.|.++|+---   .+.....-+ .=-.+|.|.  +.+.=    
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~~---~~~s~~aa~a~~aA~~~g~~~~~~~~----   93 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFL---GPLGKELTQAWAVAMALGVEDKVTVP----   93 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSSS---STTHHHHHHHHHHHHHHTCHHHHHHH----
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecccc---cccCHHHHHHHHHHHHcCcHHHHHHH----
Confidence            37899999999999999995331 23556556776677777776321   001000000 000122221  11100    


Q ss_pred             cccccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871          118 WPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG  197 (255)
Q Consensus       118 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  197 (255)
                            .+.  .=+.+..  .  ........-++..|+|.+.+.+|.++......+.+..+....+  +++-+|+++|||
T Consensus        94 ------lf~--a~~~~~~--~--~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPtfvvnG  159 (191)
T 3l9s_A           94 ------LFE--AVQKTQT--V--QSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLQGVPAMFVNG  159 (191)
T ss_dssp             ------HHH--HHHTSCC--C--SSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETT
T ss_pred             ------HHH--HHHhcCC--C--CCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHh--CCcccCEEEECC
Confidence                  011  1111111  2  2345677888999999999999999988888888888777776  689999999999


Q ss_pred             eec
Q 043871          198 DAV  200 (255)
Q Consensus       198 ~~~  200 (255)
                      ++.
T Consensus       160 ~~~  162 (191)
T 3l9s_A          160 KYQ  162 (191)
T ss_dssp             TEE
T ss_pred             EEE
Confidence            974

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=97.69  E-value=0.00042  Score=58.10  Aligned_cols=144  Identities=10%  Similarity=-0.032  Sum_probs=88.2

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      .+.+|.|.+|..=.||+|++|- ..+.+.+++...+.|.|.+.+|--.           -|.... ..-+.-.++-...+
T Consensus        12 g~a~vtiv~f~D~~Cp~C~~~~-~~~~~~l~~~~~g~v~~v~r~~p~~-----------~h~~s~-~aaraa~aa~~~~~   78 (182)
T 3gn3_A           12 GHGPRLFEVFLEPTCPFSVKAF-FKLDDLLAQAGEDNVTVRIRLQSQP-----------WHMFSG-VIVRCILAAATLEG   78 (182)
T ss_dssp             ECCSEEEEEEECTTCHHHHHHH-TTHHHHHHHHCTTTEEEEEEECCCT-----------TSTTHH-HHHHHHHHHTTSTT
T ss_pred             CCCCEEEEEEECCCCHhHHHHH-HHHHHHHHHhCCCCEEEEEEEcCCC-----------CCccHH-HHHHHHHHHHHhcc
Confidence            3678999999999999999995 5677777642355677776665211           011110 01111111221111


Q ss_pred             cccchhhhhhhccccCCCCC---------C--chhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCc
Q 043871          120 EQLLHFTFIKCLEETSWGPT---------L--DKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQ  188 (255)
Q Consensus       120 ~~~~~l~fI~Cm~~~~~~~~---------~--~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~  188 (255)
                      ....+++|..-+........         +  +.......-++..|+|.+.+   .++.+-..-+.+..+....+  +++
T Consensus        79 ~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~---l~~~~~~~~v~~~~~~a~~~--GV~  153 (182)
T 3gn3_A           79 GKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLALAEA---FANPELEHAVKWHTKYARQN--GIH  153 (182)
T ss_dssp             HHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHHTCCCHHH---HHCGGGHHHHHHHHHHHHHH--TCC
T ss_pred             ChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHhCCCHHHH---hcChHHHHHHHHHHHHHHHC--CCC
Confidence            22567888887764321110         0  23445677888899998776   45666666666655555555  689


Q ss_pred             eeeEEEECCeecC
Q 043871          189 FVPWLTLNGDAVG  201 (255)
Q Consensus       189 ~VPwI~iNG~~~~  201 (255)
                      -+|+++|||+...
T Consensus       154 gtPtf~ing~~~~  166 (182)
T 3gn3_A          154 VSPTFMINGLVQP  166 (182)
T ss_dssp             SSSEEEETTEECT
T ss_pred             ccCEEEECCEEcc
Confidence            9999999999863

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=97.67  E-value=0.00027  Score=59.27  Aligned_cols=160  Identities=10%  Similarity=0.007  Sum_probs=97.8

Q ss_pred             eEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeee---eceee--cCCc----------------------ce
Q 043871           44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWG---KAQIV--EPNE----------------------TI   96 (255)
Q Consensus        44 V~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~G---nA~~~--~~~~----------------------~f   96 (255)
                      ++|++|+.-.||+|..+. ..|..+.. ...  ++|++.||-   .....  ....                      ++
T Consensus         1 m~I~~~~D~~CP~cy~~~-~~l~~~~~-~~~--~~v~~~p~~L~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~a~~~G~   76 (203)
T 2imf_A            1 MIVDFYFDFLSPFSYLAN-QRLSKLAQ-DYG--LTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQLYGI   76 (203)
T ss_dssp             CEEEEEECTTCHHHHHHH-HHHHHHHH-HHC--CEEEEEECCHHHHHHHHTCCSCCGGGCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEeCCCHHHHHHH-HHHHHHHH-HcC--CeEEEEeeecchhhHhhCCCCcccccChHHHHHHHHHHHHHHHHcCC
Confidence            479999999999998774 44555554 232  788888882   11000  0000                      01


Q ss_pred             eecCChhhhhcchhhhhhhhcc-ccccchhhhhhhcccc----CCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHH
Q 043871           97 VCEHGEDECYFNVIHACAIKAW-PEQLLHFTFIKCLEET----SWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRW  171 (255)
Q Consensus        97 ~CQHGp~EC~gN~iqaCai~~~-~~~~~~l~fI~Cm~~~----~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~  171 (255)
                      .-.. +.  ..|...++.+-.. ..+...++|..=+...    ..++  +........+++.|+|.+.+.+|.++.+.+.
T Consensus        77 ~~~~-~~--~~~t~~a~r~~~~a~~~g~~~~~~~~lf~a~~~~~~~i--~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~  151 (203)
T 2imf_A           77 PLVF-PA--NYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAP--DLESLPALVSEKLGWDRSAFEHFLSSNAATE  151 (203)
T ss_dssp             CCCC-CS--CCCCHHHHHHGGGCCSHHHHHHHHHHHHHHHHHSCCCT--TCTTHHHHHHHHHTCCHHHHHHHHHSHHHHH
T ss_pred             CCCC-CC--CCChHHHHHHHHHHhCcChHHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHcCCCHHHHHHHhcCHHHHH
Confidence            1111 11  4455444433222 2233455555555432    2222  2345667889999999999999999988888


Q ss_pred             HHHHHHHHhhhcCCCCceeeEEEECCeecC--cchhcHHHHHHHh
Q 043871          172 LELIYAAETERLKPPIQFVPWLTLNGDAVG--PDYGNFVKYVCEA  214 (255)
Q Consensus       172 Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~--~~~~nL~~~IC~~  214 (255)
                      .+.+..+....+  ++.-+|+++|||+...  +....|...+-..
T Consensus       152 ~v~~~~~~a~~~--Gv~G~Ptfvi~g~~~~G~~~~~~l~~~l~~~  194 (203)
T 2imf_A          152 RYDEQTHAAIER--KVFGVPTMFLGDEMWWGNDRLFMLESAMGRL  194 (203)
T ss_dssp             HHHHHHHHHHHT--TCCSSSEEEETTEEEESGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC--CCCcCCEEEECCEEEECCCCHHHHHHHHhcc
Confidence            888877777665  7899999999998653  2345566655543

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.66  E-value=0.00014  Score=59.58  Aligned_cols=66  Identities=14%  Similarity=0.024  Sum_probs=49.0

Q ss_pred             hHHHHh----HhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec-C----cchhcHHHHH
Q 043871          144 KVWRTC----CQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV-G----PDYGNFVKYV  211 (255)
Q Consensus       144 ~~~~~C----a~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~----~~~~nL~~~I  211 (255)
                      ......    +++.|+|.+.+.+|.++.+.+..+.+..+....+  ++.-+|+++|||+.. .    .....|...|
T Consensus       115 ~~l~~~~~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~ing~~~~~~~g~~~~~~l~~~i  189 (195)
T 3c7m_A          115 KDPAAFIKTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVA--KIQGVPAYVVNGKYLIYTKSIKSIDAMADLI  189 (195)
T ss_dssp             TCHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHGGGHHHHH--HHHCSSEEEETTTEEECGGGCCCHHHHHHHH
T ss_pred             HHHHHHHHhHHHHcCCCHHHHHHHHcChHHHHHHHHHHHHHHHc--CCCccCEEEECCEEEeccCCCCCHHHHHHHH
Confidence            345677    8899999999999999888777777666555554  579999999999863 2    1345555554

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.59  E-value=0.00074  Score=54.73  Aligned_cols=143  Identities=15%  Similarity=0.108  Sum_probs=79.3

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhc--cCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhc
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDL--TSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKA  117 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l--~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~  117 (255)
                      ...+|.|.+|+.-.||+|++|.. .+.+.++ ++  .+.|.|.++||.-.    .. .    +.    .++..+.|+.. 
T Consensus        25 ~~a~v~i~~f~D~~Cp~C~~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~----~~-~----~~----~a~~~~~~~~~-   88 (175)
T 1z6m_A           25 SNAPVKMIEFINVRCPYCRKWFE-ESEELLA-QSVKSGKVERIIKLFDKE----KE-S----LQ----RGNVMHHYIDY-   88 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHH-HHHHTTSEEEEEEECCCC----ST-T----TH----HHHHHHTTCCT-
T ss_pred             CCCCeEEEEEECCCCcchHHHHH-HHHHHHH-HHhhCCcEEEEEEeCCCC----cc-c----HH----HHHHHHHHHHh-
Confidence            46789999999999999999964 4677665 45  55688888887432    10 0    00    12223333211 


Q ss_pred             cccccchhhhhhhccccCCC-CCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEEC
Q 043871          118 WPEQLLHFTFIKCLEETSWG-PTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLN  196 (255)
Q Consensus       118 ~~~~~~~l~fI~Cm~~~~~~-~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN  196 (255)
                       .++...++|..=+...... ...+.....+..++..|++.+         .....+.+..+....+  +++-+|+++||
T Consensus        89 -~~~~~~~~~~~~lf~~~~~~~~~~~~~l~~~a~~~~Gld~~---------~~~~~~~~~~~~a~~~--gv~gtPt~vvn  156 (175)
T 1z6m_A           89 -SAPEQALSALHKMFATQDEWGNLTLEEVATYAEKNLGLKEQ---------KDATLVSAVIAEANAA--HIQFVPTIIIG  156 (175)
T ss_dssp             -TCHHHHHHHHHHHHHTHHHHTTSCHHHHHHHHHHTSCCCCC---------CCHHHHHHHHHHHHHH--TCCSSCEEEET
T ss_pred             -cChHHHHHHHHHHHHcChhhccCCHHHHHHHHHHhcCCCcc---------cCHHHHHHHHHHHHHc--CCCCcCeEEEC
Confidence             2334455555555432100 000122233333456788754         1123344444444444  68999999999


Q ss_pred             CeecCc--chhcHHHH
Q 043871          197 GDAVGP--DYGNFVKY  210 (255)
Q Consensus       197 G~~~~~--~~~nL~~~  210 (255)
                      |+.+..  ....|...
T Consensus       157 g~~~~G~~~~~~l~~~  172 (175)
T 1z6m_A          157 EYIFDESVTEEELRGY  172 (175)
T ss_dssp             TEEECTTCCHHHHHHH
T ss_pred             CEEccCCCCHHHHHHH
Confidence            997642  24455544

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=97.48  E-value=0.00081  Score=56.49  Aligned_cols=166  Identities=11%  Similarity=0.017  Sum_probs=98.3

Q ss_pred             eEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCC-------------------cceeecCChh-
Q 043871           44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPN-------------------ETIVCEHGED-  103 (255)
Q Consensus        44 V~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~-------------------~~f~CQHGp~-  103 (255)
                      ++|++|+.-.||.|-.+ ...|..+.. .+.+-++|+++|||-.......                   .++.-...+. 
T Consensus         3 ~~I~~~~D~~CP~cy~~-~~~l~~l~~-~~~~~v~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~r~a~~~G~~f~~~~~~   80 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGY-KPTIEKLKQ-QLPGVIQFEYVVGGLAPDTNLPMPPEMQQKLEGIWKQIETQLGTKFNYDFWK   80 (208)
T ss_dssp             EEEEEEECTTCHHHHHH-HHHHHHHHH-HSCTTSEEEEEECCSSCSCCCBCCHHHHHHHHHHHHHHHHHHCCCCCTTHHH
T ss_pred             eEEEEEECCCCchhhhh-hHHHHHHHH-hCCCCceEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCcccHHHHh
Confidence            68999999999999855 344555544 5667899999998743110000                   0011111100 


Q ss_pred             h--hhcchhhhhhhhcc-ccccchhhhhhhccc----cCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHH
Q 043871          104 E--CYFNVIHACAIKAW-PEQLLHFTFIKCLEE----TSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIY  176 (255)
Q Consensus       104 E--C~gN~iqaCai~~~-~~~~~~l~fI~Cm~~----~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~  176 (255)
                      +  =..|...++-+-.. .......+|..=+..    .+.++  .........+++.|+|.+.+.+|.++.+.+..+.+.
T Consensus        81 ~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~l~~a~~~~~~~~--~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~  158 (208)
T 3kzq_A           81 LCTPVRSTYQSCRAVIAAGFQDSYEQMLEAIQHAYYLRAMPP--HEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQDQ  158 (208)
T ss_dssp             HSCCBCCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTSCCCT--TCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHH
T ss_pred             cCCCcCCcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHH
Confidence            0  01233333221111 111223455444432    12222  234567788999999999999999999988888888


Q ss_pred             HHHhhhcCCCCceeeEEEEC--CeecC-----cchhcHHHHHHHhc
Q 043871          177 AAETERLKPPIQFVPWLTLN--GDAVG-----PDYGNFVKYVCEAY  215 (255)
Q Consensus       177 ~~~T~~l~P~~~~VPwI~iN--G~~~~-----~~~~nL~~~IC~~y  215 (255)
                      .+....+  ++.-+||++||  |+...     .....|.+.|=...
T Consensus       159 ~~~a~~~--gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          159 LSLAKSL--GVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHHHHT--TCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             HHHHHHc--CCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            8887776  68999999995  44321     22455666555443

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=97.18  E-value=0.0037  Score=54.28  Aligned_cols=168  Identities=8%  Similarity=0.025  Sum_probs=104.3

Q ss_pred             ceEEEEEEEeCChhHHHHHHHhhHHHHHhhcc--CceEEEEEeeeeceeecCCc--------------------------
Q 043871           43 KVNLSVYYESLSDTGAEFITHDLGKVFEKDLT--SIVNLRLIPWGKAQIVEPNE--------------------------   94 (255)
Q Consensus        43 kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lVP~GnA~~~~~~~--------------------------   94 (255)
                      |++|++|+.-.||.|--. ...|..+.. .+.  .-++|++.||.-.-.....+                          
T Consensus         2 ~~~I~~~~D~~cPwcyig-~~~l~~a~~-~~~~~~~v~v~~~P~~L~p~~~~~g~~~~~~~~~~k~g~~~~~~~~~~~~~   79 (239)
T 3gl5_A            2 HMRVEIWSDIACPWCYVG-KARFEKALA-AFPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDNL   79 (239)
T ss_dssp             CEEEEEEECSSCHHHHHH-HHHHHHHHH-TCTTGGGEEEEEEECCSCTTCCTTCCEEHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CeEEEEEEeCcCHhHHHH-HHHHHHHHH-hcCccCceEEEEEEeccccCCCCCCCCCHHHHHHHhhCCCHHHHHHHHHHH
Confidence            689999999999999555 344666655 354  46999999995220100000                          


Q ss_pred             -------ceeecCChhhhhcchhhhhhhhcc-ccccchhhhhhhcccc----CCCCCCch-hhHHHHhHhhcCCChhhhh
Q 043871           95 -------TIVCEHGEDECYFNVIHACAIKAW-PEQLLHFTFIKCLEET----SWGPTLDK-EKVWRTCCQNLKLSPNLIK  161 (255)
Q Consensus        95 -------~f~CQHGp~EC~gN~iqaCai~~~-~~~~~~l~fI~Cm~~~----~~~~~~~~-~~~~~~Ca~~~gl~~~~I~  161 (255)
                             ++.=...+ .=..|...++-+-+. ........|+.=+...    ..++  +. .......+.+.|+|.+.+.
T Consensus        80 ~r~a~~~Gl~f~~~~-~~~~nt~~a~r~~~~A~~~g~~~~~~~alf~a~~~~g~~i--~d~~~~L~~~a~~~Gld~~~~~  156 (239)
T 3gl5_A           80 GAQAAAEGLAYRTRD-RDHGSTFDLHRLLHLAKERGRHEALLDAFYRGNFADERSV--FNDDERLVELAVGAGLDAEEVR  156 (239)
T ss_dssp             HHHHHHTTCCCCCSS-CEECCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCSSCC--SSCHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHcCCCccCCC-CCCCChHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHcCCCHHHHH
Confidence                   01111100 012344444433222 1222344444444321    2222  23 4667888999999999999


Q ss_pred             hhhcC-chhHHHHHHHHHHhhhcCCCCceeeEEEECCee-c-C-cchhcHHHHHHHhccC
Q 043871          162 DCYDN-GTGRWLELIYAAETERLKPPIQFVPWLTLNGDA-V-G-PDYGNFVKYVCEAYSG  217 (255)
Q Consensus       162 ~C~~s-~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~-~-~-~~~~nL~~~IC~~y~g  217 (255)
                      +|.++ .+.+..+.+..+....+  ++.-|||++|||++ + + .....|.+.|=.....
T Consensus       157 ~~l~s~~~~~~~v~~~~~~a~~~--Gv~GvPtfvv~g~~~v~Ga~~~e~~~~~i~~~~~~  214 (239)
T 3gl5_A          157 AVLADPAAYADEVRADEREAAQL--GATGVPFFVLDRAYGVSGAQPAEVFTQALTQAWGE  214 (239)
T ss_dssp             HHHHCTTTTHHHHHHHHHHHHHT--TCCSSSEEEETTTEEEESSCCHHHHHHHHHHHHHT
T ss_pred             HHHcCcHhHHHHHHHHHHHHHHC--CCCeeCeEEECCcEeecCCCCHHHHHHHHHHHHhh
Confidence            99999 88888888887777766  68999999999985 3 2 2456777777766654

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=96.99  E-value=0.0025  Score=53.54  Aligned_cols=161  Identities=9%  Similarity=0.047  Sum_probs=96.6

Q ss_pred             CceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEee--eeceeecCCc-----------------------ce
Q 043871           42 EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPW--GKAQIVEPNE-----------------------TI   96 (255)
Q Consensus        42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~--GnA~~~~~~~-----------------------~f   96 (255)
                      ..++|++|+.-.||.|--. ...|..+.. ..  -++|++.||  |-.-...++.                       ++
T Consensus         3 ~~~~I~~~~D~~cPwcyi~-~~~l~~~~~-~~--~~~v~~~p~~L~~~~~~~g~~~~~~~~~k~~~~~~~~~r~a~~~G~   78 (202)
T 3fz5_A            3 AMNPIEFWFDFSSGYAFFA-AQRIEALAA-EL--GRTVLWRPYMLGAAFSVTGARGLSSTPLKRDYAQRDWARIARQRGL   78 (202)
T ss_dssp             CCSCEEEEECTTCHHHHHH-HTTHHHHHH-HH--TCCEEEEECTTC----------CCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCceeEEEEeCCCHHHHHH-HHHHHHHHH-Hh--CCeEEEEeeeccchhhhcCCCCcccCcHHHHHHHHHHHHHHHHhCC
Confidence            3568999999999999554 334555544 22  388999998  3221100000                       11


Q ss_pred             eecCChhhhhcchhhhhhhhcc-ccc--cchhhhhhhcccc----CCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchh
Q 043871           97 VCEHGEDECYFNVIHACAIKAW-PEQ--LLHFTFIKCLEET----SWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTG  169 (255)
Q Consensus        97 ~CQHGp~EC~gN~iqaCai~~~-~~~--~~~l~fI~Cm~~~----~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G  169 (255)
                      .-.. +..=..|...++-+-+. ...  ....+|+.=+...    +.++  +........+.+.|+|.+.+.++.++.+.
T Consensus        79 ~f~~-~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~g~~i--~~~~~L~~~a~~~Gld~~~~~~~~~s~~~  155 (202)
T 3fz5_A           79 TFRP-PADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDT--ASPEAVSRLGPEVGLEPEALLAGIADPAL  155 (202)
T ss_dssp             CCCC-CTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCCCT--TCHHHHHTTHHHHTCCHHHHHHHTTCHHH
T ss_pred             CCCC-CCCCCCChHHHHHHHHHHHhhCchHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCHHHHHHHhcCHHH
Confidence            1111 11111355555533222 111  2455555555432    1122  23556788999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCceeeEEEECCeecC-c-chhcHHHHH
Q 043871          170 RWLELIYAAETERLKPPIQFVPWLTLNGDAVG-P-DYGNFVKYV  211 (255)
Q Consensus       170 ~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~-~-~~~nL~~~I  211 (255)
                      ++.+.+..++...+  ++.-|||++|||+... . .+..|...+
T Consensus       156 ~~~v~~~~~~a~~~--Gv~GvPtfvv~g~~~~G~~~~~~l~~~l  197 (202)
T 3fz5_A          156 KETVRKIGEDAVAR--GIFGSPFFLVDDEPFWGWDRMEMMAEWI  197 (202)
T ss_dssp             HHHHHHHHHHHHHT--TCCSSSEEEETTEEEESGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCCcCCEEEECCEEEecCCCHHHHHHHH
Confidence            99888888888776  6899999999998652 2 244454444

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.91  E-value=0.0039  Score=51.79  Aligned_cols=149  Identities=11%  Similarity=0.019  Sum_probs=83.9

Q ss_pred             CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhcccc
Q 043871           41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPE  120 (255)
Q Consensus        41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~  120 (255)
                      ..++.|..|+.-.||.|++|-  ...+-+.+++ + +.|..+|...             |+..+ ..-+.-.++-...+.
T Consensus        21 ~~~~~vvef~d~~Cp~C~~~~--~~~~~~~~~~-~-v~~~~~p~~~-------------~~~~~-~aa~a~~Aa~~q~g~   82 (185)
T 3feu_A           21 DGMAPVTEVFALSCGHCRNME--NFLPVISQEA-G-TDIGKMHITF-------------NQSAH-IASMFYYAAEMQVDG   82 (185)
T ss_dssp             SCCCSEEEEECTTCHHHHHHG--GGHHHHHHHH-T-SCCEEEECCS-------------SSHHH-HHHHHHHHHHTTSSS
T ss_pred             CCCCEEEEEECCCChhHHHhh--HHHHHHHHHh-C-CeEEEEeccC-------------Cccch-HHHHHHHHHHHHhCC
Confidence            367889999999999999993  3444443344 3 5666666421             11111 011111122111111


Q ss_pred             ccchhhhhhhccccCCCCCC----chhhHHHHhHhhcCC-ChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEE
Q 043871          121 QLLHFTFIKCLEETSWGPTL----DKEKVWRTCCQNLKL-SPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTL  195 (255)
Q Consensus       121 ~~~~l~fI~Cm~~~~~~~~~----~~~~~~~~Ca~~~gl-~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~i  195 (255)
                       ....++..=+......-.+    .........+.+.|+ |.+.+.++.++ .....+.+..+....+  +++-+|+++|
T Consensus        83 -~~~~~~~~~lf~a~~~~~~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~-~~~~~v~~~~~~a~~~--gv~GtPtfvv  158 (185)
T 3feu_A           83 -APDHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRD-TLIKKVDNAKMLSEKS--GISSVPTFVV  158 (185)
T ss_dssp             -SCCHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHH-HHHHHHHHHHHHHHHH--TCCSSSEEEE
T ss_pred             -chHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHc--CCCccCEEEE
Confidence             0112333333211100000    234567788999998 99999999876 5556666666666666  6899999999


Q ss_pred             CCeecC-----cchhcHHHHH
Q 043871          196 NGDAVG-----PDYGNFVKYV  211 (255)
Q Consensus       196 NG~~~~-----~~~~nL~~~I  211 (255)
                      ||++.-     .....|.+.|
T Consensus       159 ng~~~v~~~Ga~~~e~~~~~i  179 (185)
T 3feu_A          159 NGKYNVLIGGHDDPKQIADTI  179 (185)
T ss_dssp             TTTEEECGGGCSSHHHHHHHH
T ss_pred             CCEEEEecCCCCCHHHHHHHH
Confidence            999732     1245565554

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=96.33  E-value=0.019  Score=48.79  Aligned_cols=78  Identities=6%  Similarity=-0.043  Sum_probs=57.1

Q ss_pred             hhhHHHHhHhhcCCCh---hhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEEC----CeecC--cchhcHHHHHH
Q 043871          142 KEKVWRTCCQNLKLSP---NLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLN----GDAVG--PDYGNFVKYVC  212 (255)
Q Consensus       142 ~~~~~~~Ca~~~gl~~---~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN----G~~~~--~~~~nL~~~IC  212 (255)
                      ........+.+.|++.   +.+.+|.++.+.+..+.+..+....+  ++.-|||++||    |+...  +....|...+=
T Consensus       134 ~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~G~Ptfvv~~~g~~~~~~G~~~~~~l~~~l~  211 (226)
T 1r4w_A          134 ESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKY--GAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLG  211 (226)
T ss_dssp             SHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHT--TCCSSCEEEEEETTEEEEEESTTCHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHHHHHHHC--CCCCCCEEEEeCCCCcCceeCCCcHHHHHHHhc
Confidence            3456778899999964   47888888988888888887777766  68999999999    66542  23556677776


Q ss_pred             HhccCCCCCC
Q 043871          213 EAYSGSHVPE  222 (255)
Q Consensus       213 ~~y~g~~~P~  222 (255)
                      ..+.| +.|.
T Consensus       212 ~~~~~-~~~~  220 (226)
T 1r4w_A          212 EKWMG-PVPP  220 (226)
T ss_dssp             CCCCC-SSCC
T ss_pred             CcccC-CCCc
Confidence            66666 3443

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=96.14  E-value=0.075  Score=45.73  Aligned_cols=168  Identities=11%  Similarity=-0.021  Sum_probs=95.2

Q ss_pred             CceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEee--eeceeec---CCc--------------------ce
Q 043871           42 EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPW--GKAQIVE---PNE--------------------TI   96 (255)
Q Consensus        42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~--GnA~~~~---~~~--------------------~f   96 (255)
                      .+.+|++|+.-.||.|--.. ..|..+.. ..  -++|++.||  |..-...   +..                    ++
T Consensus         4 ~~~~I~~~~D~~CPwcyi~~-~~L~~~~~-~~--~v~v~~~p~~L~~~~~~~g~~~~~~~~~k~~y~~~~~~r~a~~~G~   79 (234)
T 3rpp_A            4 LPRTVELFYDVLSPYSWLGF-EILCRYQN-IW--NINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMANDLKLLRHHLQI   79 (234)
T ss_dssp             CCEEEEEEECTTCHHHHHHH-HHHHHHTT-TS--SEEEEEEECCHHHHCC----CCCSSSCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCceEEEEEeCCCHHHHHHH-HHHHHHHH-Hc--CCeEEEEEeecchhhhhcCCCCcccChHHHHHHHHHHHHHHHHhCC
Confidence            45799999999999995442 23433322 12  488999998  3110000   000                    11


Q ss_pred             eecCCh--h--hhhcchhhhhhhhcc-c--cccchhhhhhhccc----cCCCCCCchhhHHHHhHhhcCCCh---hhhhh
Q 043871           97 VCEHGE--D--ECYFNVIHACAIKAW-P--EQLLHFTFIKCLEE----TSWGPTLDKEKVWRTCCQNLKLSP---NLIKD  162 (255)
Q Consensus        97 ~CQHGp--~--EC~gN~iqaCai~~~-~--~~~~~l~fI~Cm~~----~~~~~~~~~~~~~~~Ca~~~gl~~---~~I~~  162 (255)
                      .-...+  .  .-..|...++-+-.. .  .......++.=+..    .+.++  +........+.+.|+|.   +.+.+
T Consensus        80 ~f~~~~~~~~~~~~~nt~~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~g~di--~d~~~L~~~a~~~GLd~~~~~~~l~  157 (234)
T 3rpp_A           80 PIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDI--TEPQSILAAAEKAGMSAEQAQGLLE  157 (234)
T ss_dssp             CCCCCSSCHHHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCC--SSHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             CCCCCCCCcccccCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            111110  0  001154444433221 1  12334445444431    12222  34567788999999999   45556


Q ss_pred             hhcCchhHHHHHHHHHHhhhcCCCCceeeEEEEC--Ce-e--cCc-chhcHHHHHHHhccC
Q 043871          163 CYDNGTGRWLELIYAAETERLKPPIQFVPWLTLN--GD-A--VGP-DYGNFVKYVCEAYSG  217 (255)
Q Consensus       163 C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN--G~-~--~~~-~~~nL~~~IC~~y~g  217 (255)
                      -.++.+.++.+.++.++..++  ++.-|||++||  |+ .  -+. .+..|...+=..+.|
T Consensus       158 ~~~s~~~~~~l~~~~~~a~~~--Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L~~~~~~  216 (234)
T 3rpp_A          158 KIATPKVKNQLKETTEAACRY--GAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMG  216 (234)
T ss_dssp             TTTSHHHHHHHHHHHHHHHHT--TCSSSCEEEEEETTEEEEEESSSCHHHHHHHHTCCCCC
T ss_pred             HccCHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCCCcCceeCccCHHHHHHHhccccCC
Confidence            668888888888888887776  78999999995  74 2  233 345566666555666

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=94.58  E-value=0.047  Score=45.97  Aligned_cols=57  Identities=12%  Similarity=0.069  Sum_probs=48.5

Q ss_pred             hhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec
Q 043871          142 KEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV  200 (255)
Q Consensus       142 ~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  200 (255)
                      ........+...|+|.+.+.+|.++......+.+..+..+.+  +++-||+++|||++.
T Consensus         5 d~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--gi~gvP~fvingk~~   61 (197)
T 1un2_A            5 SASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKYQ   61 (197)
T ss_dssp             SHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEE
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEEcceEe
Confidence            345667889999999999999999999888888887777766  678899999999974

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=88.28  E-value=0.76  Score=39.34  Aligned_cols=42  Identities=19%  Similarity=0.257  Sum_probs=32.8

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeee
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWG   85 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~G   85 (255)
                      ...++.|.+|+.-.||+|++|.. +|.+.++.   +.|.|.++||+
T Consensus        95 ~~ak~~v~~F~D~~Cp~C~~~~~-~l~~~~~~---g~v~v~~~~~p  136 (241)
T 1v58_A           95 KDAPVIVYVFADPFCPYCKQFWQ-QARPWVDS---GKVQLRTLLVG  136 (241)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHHT---TSEEEEEEECC
T ss_pred             CCCCeEEEEEECCCChhHHHHHH-HHHHHHhC---CcEEEEEEECC
Confidence            45789999999999999999964 56776552   35788888874

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=84.06  E-value=1.1  Score=40.03  Aligned_cols=41  Identities=10%  Similarity=0.163  Sum_probs=32.5

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeee
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGK   86 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~Gn   86 (255)
                      .+.+..|.+|..-.||+|+++. .+|.+.+++     +++++++|+-
T Consensus       145 ~~gk~~I~vFtDp~CPYCkkl~-~~l~~~l~~-----~~Vr~i~~Pi  185 (273)
T 3tdg_A          145 ANKDKILYIVSDPMCPHCQKEL-TKLRDHLKE-----NTVRMVVVGW  185 (273)
T ss_dssp             GGTTCEEEEEECTTCHHHHHHH-HTHHHHHHH-----CEEEEEECCC
T ss_pred             CCCCeEEEEEECcCChhHHHHH-HHHHHHhhC-----CcEEEEEeec
Confidence            3577899999999999999995 457776642     7888888753

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=82.57  E-value=1.8  Score=34.55  Aligned_cols=40  Identities=15%  Similarity=0.166  Sum_probs=28.4

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeee
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGK   86 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~Gn   86 (255)
                      .+.++.|.+|..-.||+|++|-.     .+. ++.+ +.|.++.|.-
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~-----~l~-~l~~-v~v~~~~~P~   51 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEH-----EFE-KMTD-VTVYSFMMPI   51 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHH-----HHT-TCCS-EEEEEEECCC
T ss_pred             CCCCEEEEEEECCCChhHHHHHH-----HHh-hcCc-eEEEEEEccc
Confidence            45789999999999999999843     344 4543 6666555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.48
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.62
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.58
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	96.21
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	95.45
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.09
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	90.3
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	86.22

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.48  E-value=1.1e-06  Score=69.40  Aligned_cols=142  Identities=9%  Similarity=0.014  Sum_probs=89.6

Q ss_pred             CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhcccc
Q 043871           41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPE  120 (255)
Q Consensus        41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~  120 (255)
                      +.++.|..|.-=.||.|++| ...+.++.. ++.+.+.+.++|+-....            +..=...+..+|+...-..
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~-~~~~~~l~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~   82 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTF-EPIIAQLKQ-QLPEGAKFQKNHVSFMGG------------NMGQAMSKAYATMIALEVE   82 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHH-HHHHHHHHH-TSCTTCEEEEEECSSSSG------------GGHHHHHHHHHHHHHTTCH
T ss_pred             CCCCEEEEEECCCCccchhh-hhhhhhHhh-hcccccceeEEecccccc------------ccHHHHHHHHHHHHHhcch
Confidence            45678888999999999999 456777766 566666666665522200            0000111222222221111


Q ss_pred             ccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec
Q 043871          121 QLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV  200 (255)
Q Consensus       121 ~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  200 (255)
                      ...+..+..=+.......  ........-+...|+|.+.+.+|.++.+-++.+.+..+....+  +++.+|+++|||+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~--gi~gTPt~~InGk~~  158 (181)
T d1beda_          83 DKMVPVMFNRIHTLRKPP--KDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDS--GLTGVPAVVVNNRYL  158 (181)
T ss_dssp             HHHHHHHHHHHTTSCCCC--CSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--TCCSSSEEEETTTEE
T ss_pred             hhHHHHHHHHHHHhcccc--chHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHh--CCccccEEEECCEEe
Confidence            111222222222211111  3455667889999999999999999999999999988888877  689999999999974

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.62  E-value=7.7e-05  Score=58.28  Aligned_cols=149  Identities=11%  Similarity=0.027  Sum_probs=78.0

Q ss_pred             CCCcC-CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccC--ceEEEEEeeeeceeecCCcceeecCChhhhhcchhh
Q 043871           35 FPTVK-QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTS--IVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIH  111 (255)
Q Consensus        35 ~~~~~-~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d--~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iq  111 (255)
                      +.+++ ...+|.|..|..-.||.|++|- ..+.++.. +..+  .+.+.++|+..-.   ...           ..-..-
T Consensus        16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~-----------~~a~~~   79 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFINVRCPYCRKWF-EESEELLA-QSVKSGKVERIIKLFDKEK---ESL-----------QRGNVM   79 (172)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHH-HHHHTTSEEEEEEECCCCS---TTT-----------HHHHHH
T ss_pred             CCeecCCCCCEEEEEEECCCCHhHHHHH-HHHhhhhh-hhccccceeeeeccccccc---hhh-----------HHHHHH
Confidence            44454 5678999999999999999995 44666665 3443  3444555543321   110           011222


Q ss_pred             hhhhhccccccchhhhhhhccccCCC-CCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCcee
Q 043871          112 ACAIKAWPEQLLHFTFIKCLEETSWG-PTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFV  190 (255)
Q Consensus       112 aCai~~~~~~~~~l~fI~Cm~~~~~~-~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~V  190 (255)
                      +|+.... ....++.|+.=+...... .........         +......|.++..-..++.+..+....+  +++.+
T Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~a~~~--gI~gT  147 (172)
T d1z6ma1          80 HHYIDYS-APEQALSALHKMFATQDEWGNLTLEEVA---------TYAEKNLGLKEQKDATLVSAVIAEANAA--HIQFV  147 (172)
T ss_dssp             HTTCCTT-CHHHHHHHHHHHHHTHHHHTTSCHHHHH---------HHHHHTSCCCCCCCHHHHHHHHHHHHHH--TCCSS
T ss_pred             HHHHHHc-cchhHHHHHHHHHHhccccchHHHHHHH---------HHHHhhhhhhhHHHHHHHHHHHHHHHHc--CCCcC
Confidence            2222222 222333333222110000 000111111         1123445777766677776666666665  68999


Q ss_pred             eEEEECCeecCc--chhcHHHHH
Q 043871          191 PWLTLNGDAVGP--DYGNFVKYV  211 (255)
Q Consensus       191 PwI~iNG~~~~~--~~~nL~~~I  211 (255)
                      |+++|||+.+..  ....|...|
T Consensus       148 Pt~~Ing~~~~g~~~~~~~~~~i  170 (172)
T d1z6ma1         148 PTIIIGEYIFDESVTEEELRGYI  170 (172)
T ss_dssp             CEEEETTEEECTTCCHHHHHHHH
T ss_pred             CEEEECCEEecCCCCHHHHHHHH
Confidence            999999998743  345555543

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.00014  Score=57.54  Aligned_cols=140  Identities=11%  Similarity=0.025  Sum_probs=81.3

Q ss_pred             CceEEEEEEEeCChhHHHHHHHhhHHHHH--hhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871           42 EKVNLSVYYESLSDTGAEFITHDLGKVFE--KDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP  119 (255)
Q Consensus        42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~--~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~  119 (255)
                      .++.|.-|+.--||.|++|- ..|.+..+  +...+.+.+..+|+.....   .....         .-..-+|+.....
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~a~~~~~~~~~~~   84 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFE-EVLHISDNVKKKLPEGVKMTKYHVNFMGG---DLGKD---------LTQAWAVAMALGV   84 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHH-HTTCHHHHHHTTSCTTCCEEEEECSSSSH---HHHHH---------HHHHHHHHHHHTC
T ss_pred             CCCEEEEEECCCChhhHHHH-HHHHHHHHHhhccCCceEEEEEecCcCCC---hhHHH---------HHHHHHHHHHHhh
Confidence            34556678889999999995 34544332  3455678888877643210   00000         0001111111111


Q ss_pred             cccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCee
Q 043871          120 EQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA  199 (255)
Q Consensus       120 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  199 (255)
                      .......+..=+.... ..  ........=+...|+|.+.+.+|.++.+=.+++.++.+....+  +++-+||++|||++
T Consensus        85 ~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~v~~~~~~a~~~--gI~gTPt~vInGky  159 (188)
T d1fvka_          85 EDKVTVPLFEGVQKTQ-TI--RSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKY  159 (188)
T ss_dssp             HHHHHHHHHHHHHTSC-CC--CSHHHHHHHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTE
T ss_pred             hhhHHHHHHHHhhhhc-cc--chHHHHHHHHHHccCCHHHHHhhhccHHHHHHHHHHHHHHHHc--CCccccEEEECCEE
Confidence            1111111111111111 11  2334455556778999999999999988888888888888776  79999999999986

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.013  Score=46.17  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=35.1

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA   87 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA   87 (255)
                      .+.++.|.+|..-.||+|++|.. ++.+.++.   ..+.+.++||+-.
T Consensus        34 ~~a~~tv~vF~D~~CP~C~~~~~-~l~~l~~~---~~v~v~~~~~~~~   77 (169)
T d1v58a1          34 KDAPVIVYVFADPFCPYCKQFWQ-QARPWVDS---GKVQLRTLLVGVI   77 (169)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHHT---TSEEEEEEECCCS
T ss_pred             CCCCEEEEEEECCCCcchHHHHH-HHHHHHhc---cceeEEEEecccC
Confidence            56779999999999999999974 57776652   3488899998753

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.45  E-value=0.024  Score=43.60  Aligned_cols=43  Identities=14%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA   87 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA   87 (255)
                      .+.|+.|.+|..=.||+|++|- .++.++.+    ..+++.+++|...
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~-~~l~~l~~----~~~~v~~~~~~~~   66 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLH-QQLKEYND----LGITVRYLAFPRA   66 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-TTHHHHHH----TTEEEEEEECCSS
T ss_pred             CCCCEEEEEEECCCCHHHHHHh-HHHHHHhc----cCceEEEEEeccc
Confidence            5678899999999999999984 45665543    3467888877543

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0096  Score=48.42  Aligned_cols=55  Identities=13%  Similarity=0.071  Sum_probs=48.3

Q ss_pred             hHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec
Q 043871          144 KVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV  200 (255)
Q Consensus       144 ~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  200 (255)
                      ..++.=+.+.|+|.+...+|.++..-+..+.+..+..+.+  +++-||+++|||++.
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~--gi~GtPtfiVnGky~   61 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKYQ   61 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEE
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCCEEEECCeee
Confidence            3456667789999999999999999999999999988887  689999999999984

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.30  E-value=1.5  Score=33.61  Aligned_cols=55  Identities=2%  Similarity=-0.141  Sum_probs=40.8

Q ss_pred             chhhHHHHhHhhcCCChhhhhhh---hcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871          141 DKEKVWRTCCQNLKLSPNLIKDC---YDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG  197 (255)
Q Consensus       141 ~~~~~~~~Ca~~~gl~~~~I~~C---~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  197 (255)
                      +.......++.+.|++.+.+.+=   .++++.++.+.++-++....  ++.-|||.+|||
T Consensus       132 ~d~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~k~~l~~~~~~A~~~--GvfGvPtfvi~~  189 (221)
T d1r4wa_         132 TESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKY--GAFGLPTTVAHV  189 (221)
T ss_dssp             SSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHT--TCCSSCEEEEEE
T ss_pred             cchHHHHHHHHHhCccccccccccccccCHHHHHHHHHHHHHHHHC--CCeECCEEEEcc
Confidence            35677899999999988765443   45566777777666665554  789999999985

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.22  E-value=0.34  Score=36.87  Aligned_cols=40  Identities=10%  Similarity=0.180  Sum_probs=28.1

Q ss_pred             CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEee
Q 043871           40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPW   84 (255)
Q Consensus        40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~   84 (255)
                      .+.|+.|.+|..-.||+|++|- ..|.+..+    +.+.+.++.|
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~-~~l~~~~~----~~~~~~~~~~   63 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLH-EQMADYNA----LGITVRYLAF   63 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHH-TTHHHHHH----TTEEEEEEEC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHH-HHHHHhhc----cCceEEEEec
Confidence            5678999999999999999984 33444332    3456666555