Citrus Sinensis ID: 043885

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-----
MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLPSKKF
cccEEcccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccccEEEccccccccccHHHHHHHHHHHcccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccEEEcccccHHHHHHHHHHHHHHHcccccccc
ccEEEEEccccccEEEEcccccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccEccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHEEEEEHHccccccccHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccEEcccHHHHHHHHHccEEcccccccccHHHEcccccccccccEEEEEEEEEccHHHHHcccccccccHHHHHHHHHHccccHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHcccccEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccHEEEEccccEEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHccccccccccEcccccHHHHHHccHHHHHccEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccccEccHHHHcHHHHHHHHHHHHHcccccccc
mwklklseginepwgrslnnhvgrqvwefepslgtpeeQAQVEKLRNDFtknrfqmkhSSDLLMRLQFvkenpcdmkgqlpqvkveenseeevnEEAVNTTLRRALRFYSTlqsedgfwpgdyagplfllPCLVIGLYITGDLNTILQVEYRREMLRYLYNhqnedggwglhiEGESTMLNTVLSYVGLRLlgermdggdgAIEKARKWILgrggatyipswGKIWLSVLGVydwsgnnpippetwllpdflpthpgrmwchtrlvllptsylygkrfVGKINSLVLCLReelytrpyekidwnRARFLCAqedlyrqhpmfqDMLWNFSHKVaepllkkwpfskIRQIALDTVMKHihcedentQYICIAGVNKVLNMLCRWvedpnseayKHHLARIKDYLWVAEDGmkmqayngsqlWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVrtksfedpscwyrhefqegwpfssldngwiatdttaeGLNVSVLLSEMSYDlvgeaiplnRLFEAVNVVLSLQnssggvasyerTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIEsiqrpdgwwygswgvcftygtwfgikglvdsgrkyensrSIRKACDFLLSkqldsggwgesYVSCVDRVYtnlegnkahNVNTAWAMLALIEAgqahrdptplHRAARVLINSqmengdfpqqeimgsftrnCMISYSAWRNIFPIWALGafynrvllpskkf
mwklklseginepwgrslnnhVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLpqvkveenseeevneeavnttlRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYtrpyekidwnRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSlqnssggvasYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSkqldsggwgeSYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLPSKKF
MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKveenseeevneeavnTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLPSKKF
*****************LNNHVGRQVWEF*********************************LMRLQFV*****************************NTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHR***PLHRAARVLINS******FPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLL*****
MWKLK**EGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQL*****************VNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEM********IPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLP****
MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQV***************NTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLPSKKF
MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLP****
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MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLPSKKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query765 2.2.26 [Sep-21-2011]
Q8W3Z3757 Cycloartenol synthase 2 O N/A no 0.985 0.996 0.661 0.0
Q2XPU6759 Cycloartenol synthase OS= N/A no 0.989 0.997 0.654 0.0
O82139758 Cycloartenol Synthase OS= N/A no 0.985 0.994 0.650 0.0
Q9SXV6757 Cycloartenol synthase OS= N/A no 0.985 0.996 0.646 0.0
P38605759 Cycloartenol synthase OS= yes no 0.986 0.994 0.644 0.0
Q6BE23759 Probable oxidosqualene cy N/A no 0.983 0.990 0.648 0.0
Q6Z2X6759 Cycloartenol synthase OS= yes no 0.992 1.0 0.631 0.0
E2IUB0764 Cycloartenol synthase OS= N/A no 0.992 0.993 0.631 0.0
Q8W3Z4767 Cycloartenol synthase OS= N/A no 0.985 0.983 0.644 0.0
Q6BE25766 Cycloartenol synthase OS= N/A no 0.992 0.990 0.625 0.0
>sp|Q8W3Z3|CAS2_BETPL Cycloartenol synthase 2 OS=Betula platyphylla GN=CASBPX2 PE=1 SV=1 Back     alignment and function desciption
 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/759 (66%), Positives = 596/759 (78%), Gaps = 5/759 (0%)

Query: 1   MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSS 60
           MWKLK++EG   PW R+LNNHVGRQVWEF+P LG+PEE A++E+ R    K RF+ KHSS
Sbjct: 1   MWKLKIAEG-GSPWLRTLNNHVGRQVWEFDPKLGSPEELAEIERARETSLKVRFEKKHSS 59

Query: 61  DLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWP 120
           DLLMR+QF KENP      LPQVKV  N  E+V EE V   LRRA+ F+STLQ+ DG W 
Sbjct: 60  DLLMRIQFAKENP--RGAVLPQVKV--NETEDVTEEMVTRMLRRAISFHSTLQAHDGHWA 115

Query: 121 GDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTML 180
           GDY GP+FL+P LVI L ITG LNT+L  E+++EM RYLYNHQN+DGGWGLHIEG STM 
Sbjct: 116 GDYGGPMFLMPGLVITLSITGALNTVLSEEHKKEMCRYLYNHQNKDGGWGLHIEGPSTMF 175

Query: 181 NTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNP 240
            TVLSYV LRLLGE  + G GAIE+ RKWIL  G AT I SWGK+WLSVLG ++WSGNNP
Sbjct: 176 GTVLSYVTLRLLGEGANDGQGAIERGRKWILDHGSATAIISWGKMWLSVLGAFEWSGNNP 235

Query: 241 IPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEK 300
           +PPE WLLP  LP HPGRMWCH R+V LP SYLYGKRFVG I   V+ LR+ELY+ PY +
Sbjct: 236 LPPEIWLLPYMLPVHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTVMSLRKELYSVPYHE 295

Query: 301 IDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHC 360
           IDWN+AR LCA+E LY  HP+ QD+LW   HK+ EP+L +WP  ++R+ AL TV++HIH 
Sbjct: 296 IDWNQARNLCAKEXLYYPHPLVQDILWASLHKLVEPVLMRWPGKRLREKALRTVLEHIHY 355

Query: 361 EDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQL 420
           EDENT+YICI  VNKVLNMLC WVEDPNSEA+K HL RI DYLW+AEDGMKMQ YNGSQL
Sbjct: 356 EDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRINDYLWIAEDGMKMQGYNGSQL 415

Query: 421 WDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSL 480
           WDTAFAV AI+STNL +EYG  L+KA+ YIK +QVR     D   WYRH  +  WPFS+ 
Sbjct: 416 WDTAFAVQAIISTNLFEEYGPTLEKAHMYIKKSQVREDCPGDLDFWYRHISKGAWPFSTA 475

Query: 481 DNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERT 540
           D+GW  +D TAEGL  ++LLS++  D+VGE +   RL++AVNV+LSLQN+ GG A+YE T
Sbjct: 476 DHGWPISDCTAEGLKAALLLSKIPPDVVGEPLVEERLYDAVNVILSLQNADGGFATYELT 535

Query: 541 RSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANF 600
           RSY W+E++NP E FG+ +IDY YVECTS+ IQ L SF K YPKHR  E++  I + A F
Sbjct: 536 RSYPWLELINPAETFGDIVIDYNYVECTSAAIQALTSFKKSYPKHREEEVDVCIKRAAMF 595

Query: 601 IESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGW 660
            E IQ  DG WYGSWGVCFTYGTWFG+KGLV +G+ + +   IRKACDFLLSKQL SGGW
Sbjct: 596 TEKIQASDGSWYGSWGVCFTYGTWFGVKGLVAAGKNFNDCFGIRKACDFLLSKQLPSGGW 655

Query: 661 GESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENG 720
           GESY+SC ++VY+++EGN++H VNT WAMLALIEAGQA RDPTPLHRAARVLINSQMENG
Sbjct: 656 GESYLSCQNKVYSHVEGNRSHVVNTGWAMLALIEAGQAERDPTPLHRAARVLINSQMENG 715

Query: 721 DFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVL 759
           DFPQ+EIMG F RNCMI+Y+A+RNIFPIWALG +  RVL
Sbjct: 716 DFPQEEIMGVFNRNCMITYAAYRNIFPIWALGEYRCRVL 754
Oxidosqualene cyclase converting oxidosqualene to cycloartenol.
Betula platyphylla (taxid: 78630)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 8
>sp|Q2XPU6|CAS1_RICCO Cycloartenol synthase OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|O82139|CAS1_PANGI Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase OS=Glycyrrhiza glabra GN=GgCAS1 PE=1 SV=1 Back     alignment and function description
>sp|P38605|CAS1_ARATH Cycloartenol synthase OS=Arabidopsis thaliana GN=CAS1 PE=1 SV=2 Back     alignment and function description
>sp|Q6BE23|OXSC_CUCPE Probable oxidosqualene cyclase OS=Cucurbita pepo GN=CPR PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2X6|CAS_ORYSJ Cycloartenol synthase OS=Oryza sativa subsp. japonica GN=Os02g0139700 PE=1 SV=1 Back     alignment and function description
>sp|E2IUB0|CASS_KALDA Cycloartenol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z4|CAS1_BETPL Cycloartenol synthase OS=Betula platyphylla GN=CASBPX1 PE=1 SV=1 Back     alignment and function description
>sp|Q6BE25|CAS1_CUCPE Cycloartenol synthase OS=Cucurbita pepo GN=CPX PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query765
224090574756 predicted protein [Populus trichocarpa] 0.986 0.998 0.697 0.0
145651385759 cycloartenol synthase [Dioscorea zingibe 0.990 0.998 0.660 0.0
257735429759 cycloartenol synthase [Dioscorea zingibe 0.990 0.998 0.660 0.0
108743267761 oxidosqualene cyclase [Lotus japonicus] 0.993 0.998 0.657 0.0
83016479757 cycloartenol synthase [Lotus japonicus] 0.985 0.996 0.665 0.0
406654340760 cycloartenol synthase [Paris polyphylla 0.992 0.998 0.657 0.0
356497534767 PREDICTED: cycloartenol synthase-like [G 0.992 0.989 0.649 0.0
451936133759 cycloartenol synthase [Paris polyphylla 0.990 0.998 0.660 0.0
75248720757 RecName: Full=Cycloartenol synthase 2 gi 0.985 0.996 0.661 0.0
289152626757 putative 2,3 oxidosqualene cyclase [Acta 0.985 0.996 0.660 0.0
>gi|224090574|ref|XP_002309028.1| predicted protein [Populus trichocarpa] gi|222855004|gb|EEE92551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1098 bits (2840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/760 (69%), Positives = 616/760 (81%), Gaps = 5/760 (0%)

Query: 1   MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSS 60
           MWKLKLSEG N+PW +S+NNHVGRQ WEF+P LGTPEE+AQVE  RN+FTK+RF  KHSS
Sbjct: 1   MWKLKLSEG-NDPWLKSVNNHVGRQFWEFDPHLGTPEERAQVENYRNEFTKSRFLTKHSS 59

Query: 61  DLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWP 120
           DLLMR QF +ENPC+MK  LP  KV   SEEE+ +E V+TTLRR+LRFYSTLQ+EDGFWP
Sbjct: 60  DLLMRFQFARENPCEMK--LPMAKVR--SEEEITKEVVDTTLRRSLRFYSTLQAEDGFWP 115

Query: 121 GDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTML 180
           GDY GP+FLLP LVI LY+TG LNTIL  ++R+EM RYLYNHQN DGGWGLHIEG STM 
Sbjct: 116 GDYGGPMFLLPGLVICLYVTGALNTILHNQHRQEMCRYLYNHQNVDGGWGLHIEGSSTMF 175

Query: 181 NTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNP 240
            TVLSYV LRLLGE MDGGDG++ KARKW+L  GGAT+IPSWGK+WLSVLGVY+WSGNNP
Sbjct: 176 CTVLSYVTLRLLGEEMDGGDGSMGKARKWVLDHGGATHIPSWGKMWLSVLGVYEWSGNNP 235

Query: 241 IPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEK 300
           + PE WLLP   P HPGR+WC  R+V LP SYLYGK+FV    SLVL +R E+YT PY +
Sbjct: 236 LLPELWLLPYLFPAHPGRLWCQCRMVYLPMSYLYGKKFVCSTTSLVLSIRREIYTIPYHQ 295

Query: 301 IDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIHC 360
           IDW++ R LCA+EDLY  HP+ QD++W   HK  EPL  +WP SK+RQ ALD+VM+ +H 
Sbjct: 296 IDWDQTRNLCAKEDLYYPHPLLQDIVWACIHKAVEPLFTRWPLSKLRQRALDSVMQRVHY 355

Query: 361 EDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQL 420
           EDE TQY+C+  VNKVLNMLC WVEDPNSEAYK HLARI DYLWVAEDGMKMQ YNGSQL
Sbjct: 356 EDETTQYVCLGPVNKVLNMLCCWVEDPNSEAYKCHLARINDYLWVAEDGMKMQGYNGSQL 415

Query: 421 WDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSL 480
           WD +FAV AIL+TN  DE+  MLKKA+N++K TQ+RT S +D + W RH  +  WPFS+ 
Sbjct: 416 WDVSFAVQAILATNFADEFAPMLKKAHNFMKNTQMRTNSSDDFNDWNRHISKGAWPFSTP 475

Query: 481 DNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERT 540
           DNGW  +D TAEGL   +LLS +  D+VGEAIP +  ++AVNV+LSLQN +GG ASYE T
Sbjct: 476 DNGWPVSDCTAEGLKAGILLSRLPSDMVGEAIPADWFYDAVNVILSLQNKNGGFASYELT 535

Query: 541 RSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANF 600
           RSYAW+E+LNP E FG  +IDYQYVECTS+ IQ LKSF K YP HR++EIE  + K  +F
Sbjct: 536 RSYAWLEILNPAETFGNIMIDYQYVECTSAVIQGLKSFKKSYPGHRKKEIEACMVKAIDF 595

Query: 601 IESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGGW 660
           IE  Q+PDG WYGSWGVCFTYGTWFGIKGLV  GR Y+NS SIR AC+FLLSKQL SGGW
Sbjct: 596 IERTQQPDGSWYGSWGVCFTYGTWFGIKGLVAGGRTYQNSSSIRIACEFLLSKQLVSGGW 655

Query: 661 GESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENG 720
           GESY+S  D+VYTNL G K+H VNT WAMLALIEAGQA RDP+PLHRAA++LINS ME G
Sbjct: 656 GESYLSSQDKVYTNLGGGKSHLVNTGWAMLALIEAGQAERDPSPLHRAAKLLINSAMETG 715

Query: 721 DFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLL 760
           +FPQQEIMG F +NCMISYSA+RNIFPIWALG + NRVLL
Sbjct: 716 EFPQQEIMGVFNKNCMISYSAYRNIFPIWALGEYRNRVLL 755

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|145651385|emb|CAM91422.1| cycloartenol synthase [Dioscorea zingiberensis] Back     alignment and taxonomy information
>gi|257735429|emb|CBD47302.1| cycloartenol synthase [Dioscorea zingiberensis] Back     alignment and taxonomy information
>gi|108743267|dbj|BAE95409.1| oxidosqualene cyclase [Lotus japonicus] Back     alignment and taxonomy information
>gi|83016479|dbj|BAE53431.1| cycloartenol synthase [Lotus japonicus] Back     alignment and taxonomy information
>gi|406654340|gb|AFS49705.1| cycloartenol synthase [Paris polyphylla var. yunnanensis] Back     alignment and taxonomy information
>gi|356497534|ref|XP_003517615.1| PREDICTED: cycloartenol synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|451936133|gb|AGF87141.1| cycloartenol synthase [Paris polyphylla var. yunnanensis] Back     alignment and taxonomy information
>gi|75248720|sp|Q8W3Z3.1|CAS2_BETPL RecName: Full=Cycloartenol synthase 2 gi|18147592|dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla] Back     alignment and taxonomy information
>gi|289152626|gb|ADC84219.1| putative 2,3 oxidosqualene cyclase [Actaea racemosa] gi|289152628|gb|ADC84220.1| putative 2,3 oxidosqualene cyclase [Actaea racemosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query765
UNIPROTKB|Q8W3Z3757 CASBPX2 "Cycloartenol synthase 0.984 0.994 0.652 5.7e-281
UNIPROTKB|Q2XPU6759 Q2XPU6 "Cycloartenol synthase" 0.989 0.997 0.645 1.9e-280
UNIPROTKB|O82139758 OSCPNX1 "Cycloartenol Synthase 0.985 0.994 0.644 5.9e-279
TAIR|locus:2060121759 CAS1 "cycloartenol synthase 1" 0.986 0.994 0.638 1.3e-276
UNIPROTKB|Q8W3Z4767 CASBPX1 "Cycloartenol synthase 0.985 0.983 0.635 1.3e-274
UNIPROTKB|E2IUB0764 E2IUB0 "Cycloartenol synthase" 0.992 0.993 0.626 3.1e-273
UNIPROTKB|Q6BE25766 CPX "Cycloartenol synthase" [C 0.992 0.990 0.616 1.5e-271
TAIR|locus:2096905756 LAS1 "lanosterol synthase 1" [ 0.985 0.997 0.639 6.6e-271
UNIPROTKB|Q6BE24764 CPQ "Cucurbitadienol synthase" 0.986 0.988 0.599 9.9e-261
UNIPROTKB|Q8W3Z2755 OSCBPW "Lupeol synthase" [Betu 0.983 0.996 0.565 5.3e-246
UNIPROTKB|Q8W3Z3 CASBPX2 "Cycloartenol synthase 2" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
 Score = 2700 (955.5 bits), Expect = 5.7e-281, P = 5.7e-281
 Identities = 496/760 (65%), Positives = 590/760 (77%)

Query:     1 MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSS 60
             MWKLK++EG   PW R+LNNHVGRQVWEF+P LG+PEE A++E+ R    K RF+ KHSS
Sbjct:     1 MWKLKIAEG-GSPWLRTLNNHVGRQVWEFDPKLGSPEELAEIERARETSLKVRFEKKHSS 59

Query:    61 DLLMRLQFVKENPCDMKGQ-LPQVKXXXXXXXXXXXXXXXTTLRRALRFYSTLQSEDGFW 119
             DLLMR+QF KENP   +G  LPQVK                 LRRA+ F+STLQ+ DG W
Sbjct:    60 DLLMRIQFAKENP---RGAVLPQVKVNETEDVTEEMVTRM--LRRAISFHSTLQAHDGHW 114

Query:   120 PGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTM 179
              GDY GP+FL+P LVI L ITG LNT+L  E+++EM RYLYNHQN+DGGWGLHIEG STM
Sbjct:   115 AGDYGGPMFLMPGLVITLSITGALNTVLSEEHKKEMCRYLYNHQNKDGGWGLHIEGPSTM 174

Query:   180 LNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNN 239
               TVLSYV LRLLGE  + G GAIE+ RKWIL  G AT I SWGK+WLSVLG ++WSGNN
Sbjct:   175 FGTVLSYVTLRLLGEGANDGQGAIERGRKWILDHGSATAIISWGKMWLSVLGAFEWSGNN 234

Query:   240 PIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYE 299
             P+PPE WLLP  LP HPGRMWCH R+V LP SYLYGKRFVG I   V+ LR+ELY+ PY 
Sbjct:   235 PLPPEIWLLPYMLPVHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTVMSLRKELYSVPYH 294

Query:   300 KIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIH 359
             +IDWN+AR LCA+E LY  HP+ QD+LW   HK+ EP+L +WP  ++R+ AL TV++HIH
Sbjct:   295 EIDWNQARNLCAKEXLYYPHPLVQDILWASLHKLVEPVLMRWPGKRLREKALRTVLEHIH 354

Query:   360 CEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGSQ 419
              EDENT+YICI  VNKVLNMLC WVEDPNSEA+K HL RI DYLW+AEDGMKMQ YNGSQ
Sbjct:   355 YEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRINDYLWIAEDGMKMQGYNGSQ 414

Query:   420 LWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSS 479
             LWDTAFAV AI+STNL +EYG  L+KA+ YIK +QVR     D   WYRH  +  WPFS+
Sbjct:   415 LWDTAFAVQAIISTNLFEEYGPTLEKAHMYIKKSQVREDCPGDLDFWYRHISKGAWPFST 474

Query:   480 LDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYER 539
              D+GW  +D TAEGL  ++LLS++  D+VGE +   RL++AVNV+LSLQN+ GG A+YE 
Sbjct:   475 ADHGWPISDCTAEGLKAALLLSKIPPDVVGEPLVEERLYDAVNVILSLQNADGGFATYEL 534

Query:   540 TRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGAN 599
             TRSY W+E++NP E FG+ +IDY YVECTS+ IQ L SF K YPKHR  E++  I + A 
Sbjct:   535 TRSYPWLELINPAETFGDIVIDYNYVECTSAAIQALTSFKKSYPKHREEEVDVCIKRAAM 594

Query:   600 FIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
             F E IQ  DG WYGSWGVCFTYGTWFG+KGLV +G+ + +   IRKACDFLLSKQL SGG
Sbjct:   595 FTEKIQASDGSWYGSWGVCFTYGTWFGVKGLVAAGKNFNDCFGIRKACDFLLSKQLPSGG 654

Query:   660 WGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMEN 719
             WGESY+SC ++VY+++EGN++H VNT WAMLALIEAGQA RDPTPLHRAARVLINSQMEN
Sbjct:   655 WGESYLSCQNKVYSHVEGNRSHVVNTGWAMLALIEAGQAERDPTPLHRAARVLINSQMEN 714

Query:   720 GDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVL 759
             GDFPQ+EIMG F RNCMI+Y+A+RNIFPIWALG +  RVL
Sbjct:   715 GDFPQEEIMGVFNRNCMITYAAYRNIFPIWALGEYRCRVL 754
GO:0010686 "tetracyclic triterpenoid biosynthetic process" evidence=IDA
GO:0016871 "cycloartenol synthase activity" evidence=IDA
UNIPROTKB|Q2XPU6 Q2XPU6 "Cycloartenol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
UNIPROTKB|O82139 OSCPNX1 "Cycloartenol Synthase" [Panax ginseng (taxid:4054)] Back     alignment and assigned GO terms
TAIR|locus:2060121 CAS1 "cycloartenol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z4 CASBPX1 "Cycloartenol synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUB0 E2IUB0 "Cycloartenol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q6BE25 CPX "Cycloartenol synthase" [Cucurbita pepo (taxid:3663)] Back     alignment and assigned GO terms
TAIR|locus:2096905 LAS1 "lanosterol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6BE24 CPQ "Cucurbitadienol synthase" [Cucurbita pepo (taxid:3663)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z2 OSCBPW "Lupeol synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W3Z4CAS1_BETPL5, ., 4, ., 9, 9, ., 80.64490.98560.9830N/Ano
Q8W3Z1BAMS_BETPL5, ., 4, ., 9, 9, ., 3, 90.54560.99210.9743N/Ano
Q6Z2X6CAS_ORYSJ5, ., 4, ., 9, 9, ., 80.63170.99211.0yesno
Q8W3Z3CAS2_BETPL5, ., 4, ., 9, 9, ., 80.66130.98560.9960N/Ano
Q8W3Z2LUPS_BETPL5, ., 4, ., 9, 9, ., 4, 10.57420.98430.9973N/Ano
F8WQD0SHS1_ASTTA5, ., 4, ., 9, 9, ., 4, 60.51050.98560.9908N/Ano
E2IUB0CASS_KALDA5, ., 4, ., 9, 9, ., 80.63170.99210.9934N/Ano
Q9SLP9CAS1_LUFCY5, ., 4, ., 9, 9, ., 80.62400.98690.9869N/Ano
Q9LRH8BAMS_PEA5, ., 4, ., 9, 9, ., 3, 90.53470.98820.9973N/Ano
A8C980GERS_RHISY5, ., 4, ., 9, 9, ., 3, 40.55490.98950.9973N/Ano
O82139CAS1_PANGI5, ., 4, ., 9, 9, ., 80.65080.98560.9947N/Ano
B9X0J1STBOS_STERE5, ., 4, ., 9, 9, ., 5, 10.50260.98560.9908N/Ano
Q948R6IMFS_LUFCY5, ., 4, ., 9, 9, ., 3, 60.50840.98950.9973N/Ano
Q9SXV6CAS1_GLYGL5, ., 4, ., 9, 9, ., 80.64690.98560.9960N/Ano
Q2XPU6CAS1_RICCO5, ., 4, ., 9, 9, ., 80.65440.98950.9973N/Ano
Q2XPU7LUPS_RICCO5, ., 4, ., 9, 9, ., 4, 10.52870.99340.9882N/Ano
Q6BE23OXSC_CUCPE5, ., 4, ., 9, 9, ., -0.64820.98300.9907N/Ano
E7DN64DAMS_SOLLC5, ., 4, ., 9, 9, ., 3, 90.51960.99080.9934N/Ano
E7DN63BAMS_SOLLC5, ., 4, ., 9, 9, ., 3, 90.55380.98820.9934N/Ano
Q6BE24CUCS_CUCPE5, ., 4, ., 9, 9, ., 3, 30.60830.98690.9882N/Ano
Q6BE25CAS1_CUCPE5, ., 4, ., 9, 9, ., 80.62590.99210.9908N/Ano
O82146BAMS2_PANGI5, ., 4, ., 9, 9, ., 3, 90.55230.99080.9960N/Ano
A8CDT3LUPS_BRUGY5, ., 4, ., 9, 9, ., 4, 10.52870.99080.9960N/Ano
O82140BAMS1_PANGI5, ., 4, ., 9, 9, ., 3, 90.54500.98950.9921N/Ano
E2IUA7GLUTS_KALDA5, ., 4, ., 9, 9, ., 4, 90.54100.97900.9765N/Ano
E2IUA8FRIES_KALDA5, ., 4, ., 9, 9, ., 5, 00.54430.99080.9882N/Ano
E2IUA9LUPS_KALDA5, ., 4, ., 9, 9, ., 4, 10.54370.99080.9908N/Ano
A8CDT2BAS_BRUGY5, ., 4, ., 9, 9, ., 3, 90.54840.98950.9973N/Ano
Q9LRH7ABAMS_PEA5, ., 4, ., 9, 9, ., 4, 00.51830.98950.9908N/Ano
P38605CAS1_ARATH5, ., 4, ., 9, 9, ., 80.64470.98690.9947yesno
Q764T8LUPS_GLYGL5, ., 4, ., 9, 9, ., 4, 10.55200.98430.9934N/Ano
E2IUA6TARS_KALDA5, ., 4, ., 9, 9, ., 3, 50.54520.98820.9704N/Ano
Q9MB42BAMS_GLYGL5, ., 4, ., 9, 9, ., 3, 90.54050.98950.9895N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.990.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VI.1421.1
hypothetical protein (756 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_IV1345
hypothetical protein (413 aa)
  •     0.438
estExt_fgenesh4_pm.C_LG_IX0217
hypothetical protein (413 aa)
  •     0.425

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query765
PLN02993763 PLN02993, PLN02993, lupeol synthase 0.0
PLN03012759 PLN03012, PLN03012, Camelliol C synthase 0.0
cd02892634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 0.0
TIGR01787621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 0.0
TIGR03463634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 1e-176
cd02889348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 1e-135
COG1657517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 5e-67
TIGR01507635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 1e-49
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 9e-39
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 7e-10
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 3e-09
TIGR04277624 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol 7e-08
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 8e-08
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 2e-07
cd02889 348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 3e-07
COG1657517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 7e-07
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 1e-06
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 1e-05
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 2e-05
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 7e-05
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 2e-04
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 2e-04
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 3e-04
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 0.001
TIGR03463634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 0.002
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information 
 Score =  947 bits (2448), Expect = 0.0
 Identities = 410/763 (53%), Positives = 540/763 (70%), Gaps = 8/763 (1%)

Query: 1   MWKLKLSEGINE-PWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHS 59
           MWKLK+ EG  E P+  S NN VGRQ WEF+P  GTPEE+A VE+ R  F  NR ++K  
Sbjct: 1   MWKLKIGEGNGEDPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKGC 60

Query: 60  SDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFW 119
           SDLL R+QF+KE     +  +P VK++   EE   E A N  LRR + F+S LQ+ DG W
Sbjct: 61  SDLLWRMQFLKEA--KFEQVIPPVKID-RGEEITYETATNA-LRRGVSFFSALQASDGHW 116

Query: 120 PGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTM 179
           PG+  GPLF LP LV  LYITG L  +   E+R+EMLR++Y HQNEDGGWGLHIE +S M
Sbjct: 117 PGEITGPLFFLPPLVFCLYITGHLEEVFDAEHRKEMLRHIYCHQNEDGGWGLHIESKSVM 176

Query: 180 LNTVLSYVGLRLLGERMDGG-DGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGN 238
             TVL+Y+ LR+LGE  +GG + A ++AR+WIL  GG TYIPSWGK WLS+LG+YDWSG 
Sbjct: 177 FCTVLNYICLRMLGEGPNGGRENACKRARQWILDHGGVTYIPSWGKFWLSILGIYDWSGT 236

Query: 239 NPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPY 298
           NP+PPE WLLP FLP H G+  C+TR+V +P SYLYGKRFVG I  L++ LREEL+ +PY
Sbjct: 237 NPMPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPY 296

Query: 299 EKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSK-IRQIALDTVMKH 357
           E+I+WN+AR LCA+ED+Y  HP+ QD++W+  H   EP L +WP +K +R+ AL   MKH
Sbjct: 297 EEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKH 356

Query: 358 IHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNG 417
           IH EDEN+ YI I  V KVL ML  W+E+PN + +K HLARI DY+WVAEDGMKMQ++ G
Sbjct: 357 IHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQSF-G 415

Query: 418 SQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPF 477
           SQLWDT FA+ A+L+++L DE   +L++ +NYIK +QVR     D    YRH  +  W  
Sbjct: 416 SQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTL 475

Query: 478 SSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASY 537
           S  D+GW  +D TAE L   +LLS M  D+VG+ I   +L+++VN++LSLQ+ +GGV ++
Sbjct: 476 SDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAW 535

Query: 538 ERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKG 597
           E  R+Y W+E+LNP + F  ++++ +YVECTS+ IQ L  F + YP HR +EI + I K 
Sbjct: 536 EPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKA 595

Query: 598 ANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDS 657
             FIES Q PDG WYG+WG+CF Y TWF + GL  +G+ Y +  ++RK   FLL+ Q D 
Sbjct: 596 VQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDD 655

Query: 658 GGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQM 717
           GGWGESY+SC ++ Y  LEGN+++ V TAWAM+ LI AGQA RD  PLHRAA+++I SQ+
Sbjct: 656 GGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQL 715

Query: 718 ENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLL 760
           ENGDFPQQEI+G+F   CM+ Y+ +RN FP+WAL  +     +
Sbjct: 716 ENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRKAAFI 758

Length = 763
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|212000 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol cyclase Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 765
PLN03012759 Camelliol C synthase 100.0
PLN02993763 lupeol synthase 100.0
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 100.0
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 100.0
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 100.0
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
PLN03012759 Camelliol C synthase 100.0
PLN02993763 lupeol synthase 100.0
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.96
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.91
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.89
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.88
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.87
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.83
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.79
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.77
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 99.73
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.72
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.69
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.64
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.63
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.62
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.62
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.6
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 99.59
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.59
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 99.58
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.55
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 99.48
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.48
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.45
PF07678246 A2M_comp: A-macroglobulin complement component; In 99.44
PLN02710 439 farnesyltranstransferase subunit beta 99.43
KOG0366329 consensus Protein geranylgeranyltransferase type I 99.41
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 99.38
PLN02710439 farnesyltranstransferase subunit beta 99.35
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.14
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 99.02
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 98.98
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.93
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.87
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 98.76
KOG0367347 consensus Protein geranylgeranyltransferase Type I 98.75
KOG0366329 consensus Protein geranylgeranyltransferase type I 98.75
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 98.52
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 98.48
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 98.45
KOG0367347 consensus Protein geranylgeranyltransferase Type I 98.36
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 98.13
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 98.06
COG1689274 Uncharacterized protein conserved in archaea [Func 98.05
COG1689274 Uncharacterized protein conserved in archaea [Func 97.98
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 97.72
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 97.6
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 97.34
PLN02592800 ent-copalyl diphosphate synthase 97.31
PLN02592 800 ent-copalyl diphosphate synthase 97.29
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 97.22
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 97.09
PLN02279 784 ent-kaur-16-ene synthase 96.64
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.17
TIGR01535648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 96.05
PLN02279784 ent-kaur-16-ene synthase 95.89
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 95.37
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 95.33
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 94.32
KOG13661436 consensus Alpha-macroglobulin [Posttranslational m 93.61
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 91.58
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 87.33
COG3387612 SGA1 Glucoamylase and related glycosyl hydrolases 86.98
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 86.58
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 86.31
PF10022361 DUF2264: Uncharacterized protein conserved in bact 84.69
>PLN03012 Camelliol C synthase Back     alignment and domain information 
Probab=100.00  E-value=1.5e-224  Score=1923.64  Aligned_cols=756  Identities=54%  Similarity=1.035  Sum_probs=740.0

Q ss_pred             CceeeeeCCCC-CCcccccCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhcccCcCCchhHHHhhhhhhhcCCCCCCC
Q 043885            1 MWKLKLSEGIN-EPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDFTKNRFQMKHSSDLLMRLQFVKENPCDMKGQ   79 (765)
Q Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~~gr~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~q~~~~~~~~~~~~   79 (765)
                      |||||+++||+ +|||+|||||||||+||||||+|||||+++||++|++|+.|||++|+|+||||||||+|||++++  +
T Consensus         1 ~wrl~~~~~~~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~~--~   78 (759)
T PLN03012          1 MWKLKIAEGNGDDPYLFSTNNFAGRQTWEFDPDAGSPEELAAVEEARRIFYDDRFHVKASSDLIWRMQFLKEKKFEQ--R   78 (759)
T ss_pred             CCceEeCCCCCCCcceecccccCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHhccCccc--C
Confidence            99999999865 89999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             CCcccccccccccccHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 043885           80 LPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYL  159 (765)
Q Consensus        80 ~~~~~~~~~~~~~~~~e~~~~al~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl  159 (765)
                      ||+||+++  +++||+|++.++++++++||+++|.+||||++|++||+|++|++||++|++|++|+++++++++||+|||
T Consensus        79 ~p~~~~~~--~~~~~~~~~~~a~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~~~~~ei~ryl  156 (759)
T PLN03012         79 IAPAKVED--AEKITFEIATNALRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQDHRKEILRYI  156 (759)
T ss_pred             CCcccCCC--CcccchHHHHHHHHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence            99999999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCccccccCCCcchhhhHHHHHHHHHcCCCCCCC-chHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCC
Q 043885          160 YNHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGG-DGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGN  238 (765)
Q Consensus       160 ~~~Qn~DGGWgl~~~~~s~m~~Tv~~Y~aLrllG~~~~~~-~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~  238 (765)
                      +||||+|||||||++|+|+|||||+||+||||||+++|++ +++|+|||+||++||||+++|+|||||||+||+|+|+++
T Consensus       157 ~~~Qn~DGGWglh~eg~s~~~~Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~GGa~~~p~w~K~wLA~lG~y~W~g~  236 (759)
T PLN03012        157 YCHQKEDGGWGLHIEGHSTMFCTTLNYICMRILGEGPDGGHDNACGRARDWILDHGGATYIPSWGKTWLSILGVFDWSGS  236 (759)
T ss_pred             HHhccCCCCeecccCCCCcchhHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHHHcCccccCCC
Confidence            9999999999999999999999999999999999999976 579999999999999999999999999999999999999


Q ss_pred             CCCCcchhccCCCCCCCCCcccccccchhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCC
Q 043885          239 NPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQ  318 (765)
Q Consensus       239 ~~lPpEl~llP~~~P~~~~~~~~~~R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p  318 (765)
                      |||||||||||+|+||||++||||||+||+||||||+|||++|++|++.+||+|||++||++|||.++|+.||++|+|||
T Consensus       237 np~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p  316 (759)
T PLN03012        237 NPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCP  316 (759)
T ss_pred             CCCChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHhhhhhccCCCH-HHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccCCCcHHHHHHHH
Q 043885          319 HPMFQDMLWNFSHKVAEPLLKKWPFS-KIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPNSEAYKHHLA  397 (765)
Q Consensus       319 ~~~~~~~~~~~l~~~~e~~~~~~p~~-~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~p~~~~~~~~l~  397 (765)
                      |+++++++|..|++++||++..||++ +||++|++++++||++||++|.|+|++||+++|+||+||+++|+||+||+|++
T Consensus       317 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~  396 (759)
T PLN03012        317 HPLIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLL  396 (759)
T ss_pred             chHHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            99999999999999999999999977 69999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhheeccCCceeeccCCCchhHHHHHHHHHHHcCCCCcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCC
Q 043885          398 RIKDYLWVAEDGMKMQAYNGSQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPF  477 (765)
Q Consensus       398 ~l~~~l~~~~dG~~~q~~~gs~~WDTalai~AL~~ag~~~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f  477 (765)
                      ||.||+|+++|||+||+| +||+|||||++|||+++|+++++.++|+||++||+++|+++|++|||..+|||++||||+|
T Consensus       397 ri~d~lw~~~dGm~~q~~-gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~F  475 (759)
T PLN03012        397 RISDYLWIAEDGMKMQSF-GSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTF  475 (759)
T ss_pred             HhhhcEEEeCCceEEcCC-CCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccc
Confidence            999999999999999999 9999999999999999999988899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhhhHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhcccccccccc
Q 043885          478 SSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGE  557 (765)
Q Consensus       478 s~~~~~~pd~D~TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~  557 (765)
                      |+.|++|||+||||++|+|+++++.++++.+|.++..+++++||+||++|||+||||++||.++++.|+|.|||+|.|+|
T Consensus       476 s~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d  555 (759)
T PLN03012        476 SDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFAD  555 (759)
T ss_pred             cCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcC
Confidence            99999999999999999999998888777888899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccCcHHHHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCC
Q 043885          558 SIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKY  637 (765)
Q Consensus       558 ~~~d~~~~d~Ta~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~  637 (765)
                      +|+||+|+|||+++|+||..|++.+|.+|.++|+++|+||++||++.|++||||+|+||+||+|||++||.||.++|+++
T Consensus       556 ~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~  635 (759)
T PLN03012        556 IVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTF  635 (759)
T ss_pred             eecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccC
Confidence            99999999999999999999998889998889999999999999999999999999999999999999999999999998


Q ss_pred             CChHHHHHHHHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCc
Q 043885          638 ENSRSIRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQM  717 (765)
Q Consensus       638 ~~~~~i~rav~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~  717 (765)
                      .++++|+|||+||+++|++||||||++.||.+++|+++++++|+++||||||+||+++|++++++++|+||++||+++|+
T Consensus       636 ~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~  715 (759)
T PLN03012        636 NDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQL  715 (759)
T ss_pred             CCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHccc
Confidence            78899999999999999999999999999999999998778899999999999999999988788889999999999999


Q ss_pred             CCCCCCCCccccccCCccccccCCccchHHHHHHHHHHHhccCC
Q 043885          718 ENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLP  761 (765)
Q Consensus       718 ~dG~w~~~~~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y~~~~~~~  761 (765)
                      +||+|+|++++|+||++|||+||+||++|||||||+|+++++++
T Consensus       716 ~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~~~~  759 (759)
T PLN03012        716 ENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEYRARVPLP  759 (759)
T ss_pred             CCCCCCCceeeeeeccceEEecCccchHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999998764

>PLN02993 lupeol synthase Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query765
1w6k_A732 Structure Of Human Osc In Complex With Lanosterol L 1e-152
1w6j_A732 Structure Of Human Osc In Complex With Ro 48-8071 L 1e-152
1gsz_A631 Crystal Structure Of A Squalene Cyclase In Complex 1e-20
2sqc_A631 Squalene-Hopene Cyclase From Alicyclobacillus Acido 1e-20
3sqc_A631 Squalene-Hopene Cyclase Length = 631 4e-20
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure 
Iteration: 1

 Score =  536 bits (1382), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/656 (44%), Positives = 398/656 (60%), Gaps = 22/656 (3%)
Query: 105 ALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQN 164
            + FY  LQ+EDG W GDY GPLFLLP L+I  ++       L   YR E++RYL + Q 
Sbjct: 80  GMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREEIVRYLRSVQL 136
Query: 165 EDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGK 224
            DGGWGLHIE +ST+  T L+YV LR+LG   D  D  + +AR  +  +GGA  IPSWGK
Sbjct: 137 PDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPD--LVRARNILHKKGGAVAIPSWGK 194
Query: 225 IWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINS 284
            WL+VL VY W G N + PE WL PD+ P HP  +WCH R V LP SY Y  R     + 
Sbjct: 195 FWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDP 254
Query: 285 LVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFS 344
           LV  LR+ELY   +  IDW   R   A ++LY  H     +++   +     L +    +
Sbjct: 255 LVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSA 309
Query: 345 KIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRW-VEDPNSEAYKHHLARIKDYL 403
            +RQ A+  + +HI  +D  T+ I I  ++K +NML RW V+ P S A++ H++RI DYL
Sbjct: 310 HLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYL 369
Query: 404 WVAEDGMKMQAYNGSQLWDTAFAVHAILST--NLVDEYGSMLKKANNYIKTTQVRTKSFE 461
           W+  DGMKMQ  NGSQ+WDTAFA+ A+L    +   E+ S L+KA+ +++ +QV      
Sbjct: 370 WMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-P 428
Query: 462 DPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAV 521
           D   +YR   + G+ FS+LD GWI +D TAE L   +LL E     V E IP  RL +AV
Sbjct: 429 DYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKC-PHVTEHIPRERLCDAV 487
Query: 522 NVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKH 581
            V+L+++N  GG A+YE  R    +E+LNP E FG+ +IDY YVECTS+ +Q LK F K 
Sbjct: 488 AVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKR 547
Query: 582 YPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSR 641
           +P+HR  EI E + +G  F    QR DG W GSWGVCFTYGTWFG++     G+ Y +  
Sbjct: 548 FPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGT 607
Query: 642 S---IRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQA 698
           +   + +ACDFLLS+Q+  GGWGE + SC +R Y     ++ H  NT WAM+ L+     
Sbjct: 608 ACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIH--NTCWAMMGLMAV--R 663
Query: 699 HRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAF 754
           H D     R  R L+  Q+ NGD+PQ+ I G F ++C ISY+++RNIFPIWALG F
Sbjct: 664 HPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRF 719
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With The Potential Anticholesteremic Drug Ro48-8071 Length = 631 Back     alignment and structure
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus Acidocaldarius Length = 631 Back     alignment and structure
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase Length = 631 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query765
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 0.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 0.0
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 6e-12
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 3e-09
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 5e-06
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 2e-06
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 7e-04
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 6e-06
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 3e-05
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 4e-05
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 5e-04
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 6e-04
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score =  680 bits (1756), Expect = 0.0
 Identities = 307/765 (40%), Positives = 417/765 (54%), Gaps = 61/765 (7%)

Query: 1   MWKLKLSEGINEPWGRSLNNHVGRQVWEFEPSLGTPEEQAQVEKLRNDF-TKNRFQMKHS 59
            +K + +          LN   GRQ W +        EQ  +E       TKN F+    
Sbjct: 13  PYKTEPATD---LGRWRLNCERGRQTWTYLQDERAGREQTGLEAYALGLDTKNYFK---- 65

Query: 60  SDLLMRLQFVKENPCDMKGQLPQVKVEENSEEEVNEEAVNTTLRRALRFYSTLQSEDGFW 119
                               LP+                       + FY  LQ+EDG W
Sbjct: 66  -------------------DLPKAHT------------AFEGALNGMTFYVGLQAEDGHW 94

Query: 120 PGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEGESTM 179
            GDY GPLFLLP L+I  ++       L   YR E++RYL + Q  DGGWGLHIE +ST+
Sbjct: 95  TGDYGGPLFLLPGLLITCHVAR---IPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTV 151

Query: 180 LNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNN 239
             T L+YV LR+LG   D  D  + +AR  +  +GGA  IPSWGK WL+VL VY W G N
Sbjct: 152 FGTALNYVSLRILGVGPD--DPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLN 209

Query: 240 PIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYE 299
            + PE WL PD+ P HP  +WCH R V LP SY Y  R     + LV  LR+ELY   + 
Sbjct: 210 TLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFA 269

Query: 300 KIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFSKIRQIALDTVMKHIH 359
            IDW   R   A ++LY  H     +++   +       +    + +RQ A+  + +HI 
Sbjct: 270 SIDWLAQRNNVAPDELYTPHSWLLRVVYALLNL-----YEHHHSAHLRQRAVQKLYEHIV 324

Query: 360 CEDENTQYICIAGVNKVLNMLCRW-VEDPNSEAYKHHLARIKDYLWVAEDGMKMQAYNGS 418
            +D  T+ I I  ++K +NML RW V+ P S A++ H++RI DYLW+  DGMKMQ  NGS
Sbjct: 325 ADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGS 384

Query: 419 QLWDTAFAVHAILST--NLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWP 476
           Q+WDTAFA+ A+L    +   E+ S L+KA+ +++ +QV      D   +YR   + G+ 
Sbjct: 385 QIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-PDYQKYYRQMRKGGFS 443

Query: 477 FSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVAS 536
           FS+LD GWI +D TAE L   +LL E     V E IP  RL +AV V+L+++N  GG A+
Sbjct: 444 FSTLDCGWIVSDCTAEALKAVLLLQEKC-PHVTEHIPRERLCDAVAVLLNMRNPDGGFAT 502

Query: 537 YERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFIAK 596
           YE  R    +E+LNP E FG+ +IDY YVECTS+ +Q LK F K +P+HR  EI E + +
Sbjct: 503 YETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQ 562

Query: 597 GANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENS---RSIRKACDFLLSK 653
           G  F    QR DG W GSWGVCFTYGTWFG++     G+ Y +      + +ACDFLLS+
Sbjct: 563 GLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSR 622

Query: 654 QLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLI 713
           Q+  GGWGE + SC +R Y     ++    NT WAM+ L+       +     R  R L+
Sbjct: 623 QMADGGWGEDFESCEERRYVQSAQSQI--HNTCWAMMGLMAVRHPDIE--AQERGVRCLL 678

Query: 714 NSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAFYNRV 758
             Q+ NGD+PQ+ I G F ++C ISY+++RNIFPIWALG F    
Sbjct: 679 EKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLY 723
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Length = 408 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Length = 332 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Length = 332 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Length = 1325 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query765
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 100.0
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.97
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.95
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.93
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.9
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.9
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.89
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.88
2wy7_A310 Complement C3D fragment; immune system, immune res 99.88
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.88
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.87
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.86
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.86
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.73
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.66
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.64
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.63
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.62
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.6
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.6
2wy7_A310 Complement C3D fragment; immune system, immune res 99.55
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.5
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.33
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.25
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 99.16
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 99.11
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 99.1
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.06
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 98.95
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.92
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.8
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.74
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.66
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 98.66
3prx_B 1642 Cobra venom factor; immune system, complement, imm 98.55
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 98.32
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.27
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 98.24
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.08
3k11_A445 Putative glycosyl hydrolase; structural genomics, 97.97
3prx_B 1642 Cobra venom factor; immune system, complement, imm 97.55
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.16
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.08
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.92
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.82
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 96.82
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.77
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.6
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.57
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 96.49
1nc5_A373 Hypothetical protein YTER; structural genomics, he 96.38
3pmm_A382 Putative cytoplasmic protein; structural genomics, 96.18
1nc5_A373 Hypothetical protein YTER; structural genomics, he 95.82
3k11_A445 Putative glycosyl hydrolase; structural genomics, 95.03
1lf6_A684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 94.6
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 94.37
2fba_A492 Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy 92.22
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 91.45
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 91.1
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 90.93
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 90.0
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 89.64
1gai_A472 Glucoamylase-471; hydrolase, glycosidase, polysacc 89.21
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 86.71
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 84.15
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 83.4
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 82.55
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=100.00  E-value=8.6e-151  Score=1340.19  Aligned_cols=650  Identities=45%  Similarity=0.853  Sum_probs=613.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCCccccccCC
Q 043885           96 EAVNTTLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQNEDGGWGLHIEG  175 (765)
Q Consensus        96 e~~~~al~~a~~~l~~~Q~~DG~W~~~~~g~~~~~~~~vial~~~g~~~~~~~~~~~~~~~ryl~~~Qn~DGGWgl~~~~  175 (765)
                      |++.++|+++++||+++|.+||||++|++||+|++|++||++|++|   ++++++++++++|||++|||+|||||+|+++
T Consensus        71 ~~~~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~yl~~~Q~~DGgWgl~~~~  147 (732)
T 1w6k_A           71 HTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVAR---IPLPAGYREEIVRYLRSVQLPDGGWGLHIED  147 (732)
T ss_dssp             CSHHHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHT---CCCCTTHHHHHHHHHHHHSCTTSCBCSBTTS
T ss_pred             ccHHHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhC---CCCCHHHHHHHHHHHHHhcCCCCCccCCcCC
Confidence            3677899999999999999999999999999999999999999999   6778889999999999999999999999999


Q ss_pred             CcchhhhHHHHHHHHHcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhccccCCCCCCCCcchhccCCCCCCC
Q 043885          176 ESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLPTH  255 (765)
Q Consensus       176 ~s~m~~Tv~~Y~aLrllG~~~~~~~~~~~rAr~~Il~~GGa~~~~~w~k~~Lal~G~~~W~~~~~lPpEl~llP~~~P~~  255 (765)
                      +|+||+||+||+|||++|+++++  |+|+|||+||++|||++++|+|||||||++|+|+|+++|+|||||||||+|||||
T Consensus       148 ~s~~~~T~~~Y~aLrl~G~~~~~--~~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~llP~~~p~~  225 (732)
T 1w6k_A          148 KSTVFGTALNYVSLRILGVGPDD--PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAH  225 (732)
T ss_dssp             CCBHHHHHHHHHHHHHTTCCTTS--HHHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTC
T ss_pred             CccHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHccCcCCCC
Confidence            99999999999999999999997  9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccchhhhHHHHhccccccccCchhhhhhhhhccCCCCccchhhhhhhccccccCCCCchhHHHHHHHHHHHhh
Q 043885          256 PGRMWCHTRLVLLPTSYLYGKRFVGKINSLVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAE  335 (765)
Q Consensus       256 ~~~~~~~~R~v~~pmsyl~~~r~~~~~~p~~~~lr~EL~~~p~~~i~w~~~R~~~a~~d~~~p~~~~~~~~~~~l~~~~e  335 (765)
                      |++||||||+||+||+|||++||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+|++.+++.++..| +++|
T Consensus       226 ~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e  304 (732)
T 1w6k_A          226 PSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYE  304 (732)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998887 7788


Q ss_pred             hhhccCCCHHHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccC-CCcHHHHHHHHHHhhhheeccCCceeec
Q 043885          336 PLLKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVED-PNSEAYKHHLARIKDYLWVAEDGMKMQA  414 (765)
Q Consensus       336 ~~~~~~p~~~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~-p~~~~~~~~l~~l~~~l~~~~dG~~~q~  414 (765)
                      |++    ++++|++|++++++||++|+++++|+||+||++++||++|+.++ |++|.+++|+++|.+|+|+.+|||++|+
T Consensus       305 ~~~----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~  380 (732)
T 1w6k_A          305 HHH----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQG  380 (732)
T ss_dssp             HTC----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECS
T ss_pred             hcC----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCC
Confidence            765    47899999999999999999999999999999999999998764 9999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHcCCCC--cchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhhhHH
Q 043885          415 YNGSQLWDTAFAVHAILSTNLVD--EYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAE  492 (765)
Q Consensus       415 ~~gs~~WDTalai~AL~~ag~~~--~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~TA~  492 (765)
                      +||||+|||+|+++||.++|+++  ++.+.++||++||+++|+++++ |||..+|||.++|||+|++.+++|||+||||+
T Consensus       381 ~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~-~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~  459 (732)
T 1w6k_A          381 TNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-PDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAE  459 (732)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCC-TTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccC-CcccccccCCCCCeecCCCCCCCCCccccHHH
Confidence            99999999999999999999865  4689999999999999998754 78888999999999999999999999999999


Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHHHHH
Q 043885          493 GLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTI  572 (765)
Q Consensus       493 aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta~~l  572 (765)
                      +|+||..+.+.+.+ .|.++..++++++++||+++||+||||++|+.++++.|++.+||.|.|+++++|+++++||+.+|
T Consensus       460 vl~aL~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL  538 (732)
T 1w6k_A          460 ALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVM  538 (732)
T ss_dssp             HHHHHHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHH
T ss_pred             HHHHHHHHhccccc-ccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHH
Confidence            99999988654321 25567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCCCh---HHHHHHHHH
Q 043885          573 QCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENS---RSIRKACDF  649 (765)
Q Consensus       573 ~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~~~---~~i~rav~~  649 (765)
                      ++|..+++.+|+++.++++++|+||++||++.|++||||++.||+|++|+|++++.||.++|..+.++   +.++||++|
T Consensus       539 ~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~  618 (732)
T 1w6k_A          539 QALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDF  618 (732)
T ss_dssp             HHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHH
T ss_pred             HHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHH
Confidence            99999987678887777889999999999999999999999999999999999999999999875444   899999999


Q ss_pred             HHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccc
Q 043885          650 LLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMG  729 (765)
Q Consensus       650 Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~~~g  729 (765)
                      |+++|++||||++++.||.++.|.+  ++.|++++|||||+||+.+|+.  +.++++|+++||+++|+++|+|+++.++|
T Consensus       619 Lls~Q~~DGGWge~~~s~~~~~y~~--~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g  694 (732)
T 1w6k_A          619 LLSRQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAG  694 (732)
T ss_dssp             HHTTCCTTSCCCBCTHHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCE
T ss_pred             HHHhcccCCCCCCCCccccccccCC--CCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcccc
Confidence            9999999999999999999889986  6789999999999999999875  45689999999999999999999999999


Q ss_pred             ccCCccccccCCccchHHHHHHHHHHHhccCC
Q 043885          730 SFTRNCMISYSAWRNIFPIWALGAFYNRVLLP  761 (765)
Q Consensus       730 ~f~~~~~~~Y~~Yr~~fpl~ALg~y~~~~~~~  761 (765)
                      +||++|||+|++|+++|||+||++|++++...
T Consensus       695 ~f~~~~~i~Y~~y~~~fpl~AL~~y~~~~~~~  726 (732)
T 1w6k_A          695 VFNKSCAISYTSYRNIFPIWALGRFSQLYPER  726 (732)
T ss_dssp             EETTTEEECCTTHHHHHHHHHHHHHHHHCTTS
T ss_pred             cccchhhhcccchhHHHHHHHHHHHHHhcchh
Confidence            99999999999999999999999999987543
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A* Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 765
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 1e-133
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 4e-05
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 0.003
d1w6ka2279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 1e-127
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 6e-99
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 0.002
d2sqca2271 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic 4e-72
d1r76a_408 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 4e-11
d1r76a_408 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 2e-09
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 4e-10
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 7e-05
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 6e-10
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 2e-07
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 6e-06
d1gxma_324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 4e-08
d1gxma_ 324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 2e-05
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 6e-04
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  401 bits (1031), Expect = e-133
 Identities = 170/432 (39%), Positives = 242/432 (56%), Gaps = 20/432 (4%)

Query: 338 LKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPN-SEAYKHHL 396
           L +W  +  R         ++  E    +   +      L+    + + P    A++  L
Sbjct: 17  LGRWRLNCERGRQ---TWTYLQDERAGREQTGLEAYALGLDTKNYFKDLPKAHTAFEGAL 73

Query: 397 ARIKDYLWV-AEDGMKM----QAYNGSQLWDTAFAVHAILST--NLVDEYGSMLKKANNY 449
             +  Y+ + AEDG       Q  NGSQ+WDTAFA+ A+L    +   E+ S L+KA+ +
Sbjct: 74  NGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEF 133

Query: 450 IKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVG 509
           ++ +QV      D   +YR   + G+ FS+LD GWI +D TAE L   +LL E     V 
Sbjct: 134 LRLSQVPDNP-PDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKC-PHVT 191

Query: 510 EAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTS 569
           E IP  RL +AV V+L+++N  GG A+YE  R    +E+LNP E FG+ +IDY YVECTS
Sbjct: 192 EHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTS 251

Query: 570 STIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKG 629
           + +Q LK F K +P+HR  EI E + +G  F    QR DG W GSWGVCFTYGTWFG++ 
Sbjct: 252 AVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEA 311

Query: 630 LVDSGRKYENSRS---IRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTA 686
               G+ Y +  +   + +ACDFLLS+Q+  GGWGE + SC +R Y   +  ++   NT 
Sbjct: 312 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYV--QSAQSQIHNTC 369

Query: 687 WAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIF 746
           WAM+ L+       D     R  R L+  Q+ NGD+PQ+ I G F ++C ISY+++RNIF
Sbjct: 370 WAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIF 427

Query: 747 PIWALGAFYNRV 758
           PIWALG F    
Sbjct: 428 PIWALGRFSQLY 439
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271 Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query765
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.95
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.92
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.83
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.75
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.72
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 99.69
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.66
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.62
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.61
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 99.52
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.28
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.28
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.28
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 99.2
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.93
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.41
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.36
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 98.33
d1lf6a1397 Bacterial glucoamylase, C-terminal domain {Thermoa 96.8
d1ulva1413 Glucodextranase, domain A {Arthrobacter globiformi 96.3
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 94.48
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 93.87
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 93.26
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 92.33
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 88.09
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 85.89
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-90  Score=773.50  Aligned_cols=415  Identities=41%  Similarity=0.753  Sum_probs=380.1

Q ss_pred             hccCCCHHHHHHHHHHHHHhhhhcCCCccceeechHHHHHHHhhccccCCC-cHHHHHHHHHHhhhhee-ccCCcee---
Q 043885          338 LKKWPFSKIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRWVEDPN-SEAYKHHLARIKDYLWV-AEDGMKM---  412 (765)
Q Consensus       338 ~~~~p~~~lr~~Al~~~~~~i~~ede~t~y~~i~~v~~~l~ml~~~~~~p~-~~~~~~~l~~l~~~l~~-~~dG~~~---  412 (765)
                      |.+|+++.+|.++   .+++|++|+.++.+.++.+++++|+||+|+.++|. +..+++|+.++.+|+|+ +|||+++   
T Consensus        17 l~rWrl~~~r~~~---~w~~~~~e~~g~~~~~~~~~~~~L~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~edg~w~~~~   93 (448)
T d1w6ka1          17 LGRWRLNCERGRQ---TWTYLQDERAGREQTGLEAYALGLDTKNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDY   93 (448)
T ss_dssp             GGGEEEEEETTEE---EEEECCC--CCCCCCHHHHHHHTCCCTTTSCCCCCCCSHHHHHHHHHHHHHTTBCTTSCBCCCC
T ss_pred             hhhhhhhhhcchh---hhhhhhhhcCCCcccchHHHHHHHHHhCcCccCchhhhHHHHHHhhhhHhhccccCCCchhHhh
Confidence            4567766666543   55678889999999999999999999999999886 56899999999999985 7999776   


Q ss_pred             -eccCCCchhHHHHHHHHHHHcCCC--CcchHHHHHHHHHHHhhccccCCCCCCccccCCCCCCCCCCCCCCCCCCChhh
Q 043885          413 -QAYNGSQLWDTAFAVHAILSTNLV--DEYGSMLKKANNYIKTTQVRTKSFEDPSCWYRHEFQEGWPFSSLDNGWIATDT  489 (765)
Q Consensus       413 -q~~~gs~~WDTalai~AL~~ag~~--~~~~~~l~kA~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~fs~~~~~~pd~D~  489 (765)
                       |++|+||||||+|+++||+++|..  ++++++|+||++||+.+|+++++ |||+.++++..+|||+|++.|++|||+||
T Consensus        94 ~~~~~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~~-gd~~~~~~~~~~GGW~f~~~n~~~Pd~Dd  172 (448)
T d1w6ka1          94 GQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-PDYQKYYRQMRKGGFSFSTLDCGWIVSDC  172 (448)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCC-TTGGGGTCCCCTTCCBSSCTTTCCBCHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcCC-CcchhhcCCCCCCceeCCcCCCCCCCCcc
Confidence             677899999999999999999863  56789999999999999999864 89999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHhccccCCCccccccCCCcchhhccccccccccccccCCccCcHH
Q 043885          490 TAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTS  569 (765)
Q Consensus       490 TA~aL~aL~~l~~~~~~~~g~~~~~~~l~~av~~Lls~Qn~dGGw~~~e~~~~~~~le~l~p~e~f~~~~~d~~~~d~Ta  569 (765)
                      ||++|+||+.+....+ .+++++.+++|.+||+||++|||+||||++|+.++++.|+|.+||++.|+++++|+++++||+
T Consensus       173 TA~~l~al~~~~~~~~-~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~  251 (448)
T d1w6ka1         173 TAEALKAVLLLQEKCP-HVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTS  251 (448)
T ss_dssp             HHHHHHHHHHHHHHCT-TCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHH
T ss_pred             HHHHHHHHHHHhccCc-cccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHH
Confidence            9999999998865332 356778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCcCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHcCCCCC---ChHHHHHH
Q 043885          570 STIQCLKSFTKHYPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYE---NSRSIRKA  646 (765)
Q Consensus       570 ~~l~aL~~~~~~~p~~r~~~i~~~I~rAv~~L~~~Q~~DGsW~g~wg~~~~YgT~~al~aL~aaG~~~~---~~~~i~ra  646 (765)
                      ++|++|..|++.+|+++.++++++|+||++||++.|++||||+|.||+||+|+|++++.||.++|..+.   ..+.|+||
T Consensus       252 ~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~wg~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka  331 (448)
T d1w6ka1         252 AVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRA  331 (448)
T ss_dssp             HHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHH
T ss_pred             HHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCCCCCcccccCCCcccHHHHHHHHHHHHhCcCcccccccHHHHHH
Confidence            999999999998999999999999999999999999999999999999999999999999999998653   35899999


Q ss_pred             HHHHHhcccCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCc
Q 043885          647 CDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAARVLINSQMENGDFPQQE  726 (765)
Q Consensus       647 v~~Lls~Q~~DGGWGes~~s~~~~~Y~~l~g~~S~~~~TAwALlAL~~aG~~~~d~~~i~rav~~L~~~Q~~dG~w~~~~  726 (765)
                      ++||+++|++|||||+++.||.++.|.+  ++.|++++|||||+||+++|+.  +.++++||++||+++|++||+|++++
T Consensus       332 ~~wLls~Q~~DGGWge~~~s~~~~~~~~--~~~s~~~~TAwAl~aL~~ag~~--~~~~v~rgv~~L~~~Q~~~G~W~~~~  407 (448)
T d1w6ka1         332 CDFLLSRQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQEN  407 (448)
T ss_dssp             HHHHHTTCCTTSCCCBCTHHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCS
T ss_pred             HHHHHhccCCCCCccCCCccccCcccCC--CCCCcHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHccCCCCCCCCCc
Confidence            9999999999999999999999999986  7889999999999999999965  35689999999999999999999999


Q ss_pred             cccccCCccccccCCccchHHHHHHHHHHHhccCC
Q 043885          727 IMGSFTRNCMISYSAWRNIFPIWALGAFYNRVLLP  761 (765)
Q Consensus       727 ~~g~f~~~~~~~Y~~Yr~~fpl~ALg~y~~~~~~~  761 (765)
                      ++|+||++|||+||+||++|||||||||++++...
T Consensus       408 ~~g~f~~~~~l~Y~~Y~~~fpl~AL~ry~~~~~~~  442 (448)
T d1w6ka1         408 IAGVFNKSCAISYTSYRNIFPIWALGRFSQLYPER  442 (448)
T ss_dssp             CCEEETTTEEECCTTHHHHHHHHHHHHHHHHCTTS
T ss_pred             eeeeecccceeecCCcchHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999998654
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure