Citrus Sinensis ID: 043898

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccHHHHccccccHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHcccccccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHcccccccccccEEccccccccccc
Coil and Loop (DISEMBL)
MNSSRVVVSAIAALIMFLFltpkseaaISCSDVLKDlrpcvnylksgsgkppaaccsgasalastatstadkktaCGCIKTAAqkmnpnsqlaqalptncgitlpvpvspnvdcskin
Flexible Loop (DISEMBL)
MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCgitlpvpvspnvdcskin
Low Complexity Region (SEG)
MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPaaccsgasalastatstadkktacGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN
Disordered region (IsUnstruct)
*****VVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKS********CC*****************TACGCIKT**************LPTNCGITLPV************
Disordered Region (DISOPRED)
******VVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI*
Disordered Region (DISEMBL)
MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLK****************************TACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN
Disordered Region (DISPRO)
***SRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDC****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q9ZPW9	116	Non-specific lipid-transf	yes	no	0.923	0.939	0.522	2e-26
Q43767	115	Non-specific lipid-transf	N/A	no	0.923	0.947	0.448	4e-20
Q42842	115	Non-specific lipid-transf	N/A	no	0.898	0.921	0.442	1e-19
Q43875	115	Non-specific lipid-transf	N/A	no	0.898	0.921	0.442	2e-19
P82007	116	Non-specific lipid-transf	N/A	no	0.906	0.922	0.444	4e-19
Q2QYL2	117	Non-specific lipid-transf	yes	no	0.779	0.786	0.468	2e-17
Q43766	118	Non-specific lipid-transf	N/A	no	0.915	0.915	0.394	3e-17
A2ZAT0	118	Non-specific lipid-transf	N/A	no	0.779	0.779	0.457	5e-17
Q7XJ39	118	Non-specific lipid-transf	yes	no	0.779	0.779	0.457	5e-17
P24296	113	Non-specific lipid-transf	N/A	no	0.949	0.991	0.365	2e-16

>sp|Q9ZPW9|NLTP8_ARATH Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=3 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 76/109 (69%)

Query: 10  AIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATST 69
           AI +++   F+   SE+AISCS VL+DL+PCV+YL SGSG PP  CC G  +LA+  T++
Sbjct: 8   AIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTS 67

Query: 70  ADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           ADKK AC CIK+ A  +    +LAQAL +NCG +LPV  SP VDC+ + 
Sbjct: 68  ADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTVG 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43767|NLT41_HORVU Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 7/116 (6%)

Query: 3   SSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASAL 62
           S  V+V+ +AA+++       ++AAISC  V   L PC++Y +    KPPAACCSG   L
Sbjct: 7   SQLVLVALVAAMLLV-----AADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRL 61

Query: 63  ASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           A  A STADK+ AC CIK+AA  +N     A  +P+ CG+++P  +S +VDCSKI 
Sbjct: 62  AGAAQSTADKQAACKCIKSAAGGLNAGK--AAGIPSMCGVSVPYAISASVDCSKIR 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q42842|NLT43_HORVU Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 7/113 (6%)

Query: 6   VVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALAST 65
           V+V+ +AA+++       ++AAISC  V   L PC++Y +    KPP ACCSG   LA  
Sbjct: 10  VLVAMVAAMLLV-----ATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGA 64

Query: 66  ATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           A STADK+ AC CIK+AA  +N     A  +P+ CG+++P  +S +VDCSKI 
Sbjct: 65  AQSTADKQAACKCIKSAAGGLNAGK--AAGIPSMCGVSVPYAISASVDCSKIR 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q43875|NLT42_HORVU Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 7/113 (6%)

Query: 6   VVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALAST 65
           V+V+ +AA+++       ++AAISC  V   L PC++Y +    KPP ACCSG   LA  
Sbjct: 10  VLVAMVAAMLIV-----ATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGA 64

Query: 66  ATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           A STADK+ AC CIK+AA  +N     A  +P+ CG+++P  +S +VDCSKI 
Sbjct: 65  AQSTADKQAACKCIKSAAGGLNAGK--AAGIPSMCGVSVPYAISASVDCSKIR 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|P82007|NLTP1_HELAN Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 1/108 (0%)

Query: 10  AIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATST 69
           AI A+I+   L      AI+C+DV  +L PC+ YL+SG GKP  ACC+GA  L     + 
Sbjct: 9   AILAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSG-GKPTPACCAGAKKLLGATRTQ 67

Query: 70  ADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           AD++TAC C KTAA ++     +A +LP  CGI+  +P++PNV+C+ I
Sbjct: 68  ADRRTACKCAKTAAPQLKVRPDMASSLPGKCGISTSIPINPNVNCNTI 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. Permeabilizes the membrane of fungal spores, inhibits germination of the spores of the fungus F.solani at a concentration of 40 ug/ml. Inhibits the growth of F.solani with an IC(50) of 6.5 ug/ml, weakly inhibits the growth of the fungus A.alternata. Binds oleoyl-CoA.

Helianthus annuus (taxid: 4232)

>sp|Q2QYL2|NLT2B_ORYSJ Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 66/94 (70%), Gaps = 2/94 (2%)

Query: 26  AAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQK 85
           AAISC  V   + PC++Y + GSG P AACCSG  +L S AT+TAD++TAC C+K  A  
Sbjct: 25  AAISCGQVNSAVSPCLSYARGGSG-PSAACCSGVRSLNSAATTTADRRTACNCLKNVAGS 83

Query: 86  MNP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           ++  N+  A ++P+ CG+++P  +SP++DCS +N
Sbjct: 84  ISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q43766|NLTP3_HORVU Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 6   VVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALAST 65
           V+V+ +AA+++       ++AAISC  V   L PC++Y +    KPP ACCSG   LA  
Sbjct: 10  VLVAMVAAMLLV-----ATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGA 64

Query: 66  ATSTADKKTACGCIKTAAQKMNP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           A STADK+ AC C+K+ A  +   N      +P  CG+++P P+S + DC+K++
Sbjct: 65  AQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKVH 118

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|A2ZAT0|NLTP2_ORYSI Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 66/94 (70%), Gaps = 2/94 (2%)

Query: 26  AAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQK 85
           AAISC  V   + PC++Y + GSG P AACCSG  +L S A++TAD++TAC C+K  A  
Sbjct: 26  AAISCGQVNSAVSPCLSYARGGSG-PSAACCSGVRSLNSAASTTADRRTACNCLKNVAGS 84

Query: 86  MNP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           ++  N+  A ++P+ CG+++P  +SP++DCS +N
Sbjct: 85  ISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7XJ39|NLT2A_ORYSJ Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 66/94 (70%), Gaps = 2/94 (2%)

Query: 26  AAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQK 85
           AAISC  V   + PC++Y + GSG P AACCSG  +L S A++TAD++TAC C+K  A  
Sbjct: 26  AAISCGQVNSAVSPCLSYARGGSG-PSAACCSGVRSLNSAASTTADRRTACNCLKNVAGS 84

Query: 86  MNP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           ++  N+  A ++P+ CG+++P  +SP++DCS +N
Sbjct: 85  ISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P24296|NLTP1_WHEAT Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 4   SRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALA 63
           ++V++ A+A L++ L   P++  AI C  V   +RPC++Y++ G G P   CC G   L 
Sbjct: 1   AQVMLMAVA-LVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLH 58

Query: 64  STATSTADKKTACGCIKTAAQKM-NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           + A S +D+++AC C+K  A+ + N N   A+++P  CG+ LP  +S N+DCS++
Sbjct: 59  NQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
224120950	106	predicted protein [Populus trichocarpa]	0.898	1.0	0.726	4e-38
224120958	118	predicted protein [Populus trichocarpa]	0.991	0.991	0.726	8e-36
351725739	139	uncharacterized protein LOC100306055 [Gl	0.805	0.683	0.747	8e-34
356557076	138	PREDICTED: LOW QUALITY PROTEIN: non-spec	0.796	0.681	0.755	2e-33
255581811	122	Nonspecific lipid-transfer protein precu	0.983	0.950	0.709	2e-33
388514249	114	unknown [Lotus japonicus]	0.932	0.964	0.627	4e-33
147798126	147	hypothetical protein VITISV_034315 [Viti	0.983	0.789	0.663	7e-33
225450261	118	PREDICTED: non-specific lipid-transfer p	0.991	0.991	0.666	9e-33
224106575	106	predicted protein [Populus trichocarpa]	0.898	1.0	0.735	2e-32
357451153	115	Non-specific lipid-transfer protein [Med	0.966	0.991	0.589	2e-32

>gi|224120950|ref|XP_002330866.1| predicted protein [Populus trichocarpa] gi|222872688|gb|EEF09819.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 95/106 (89%)

Query: 11  IAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTA 70
           +AAL+MFL LTP SEAAISCSDV+KDLRPCV+YL +G+GKPPAACCSG SA+ ++A++TA
Sbjct: 1   MAALMMFLLLTPPSEAAISCSDVIKDLRPCVSYLMNGTGKPPAACCSGISAIQASASTTA 60

Query: 71  DKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSK 116
           DK+ AC CIK+A++++NP+ QLAQALP NCGITLP  VSPNVDCSK
Sbjct: 61  DKQAACNCIKSASKQINPSPQLAQALPANCGITLPFTVSPNVDCSK 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120958|ref|XP_002330868.1| predicted protein [Populus trichocarpa] gi|222872690|gb|EEF09821.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 102/117 (87%)

Query: 1   MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGAS 60
           MNS  VV +A+AAL+MFL LTP S+AAISCSDV+KDLRPCV YL +G+GKPPAACCSG S
Sbjct: 1   MNSPSVVAAAMAALMMFLLLTPPSDAAISCSDVIKDLRPCVKYLMNGTGKPPAACCSGIS 60

Query: 61  ALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           A+ +TA++TADK+ AC CIK+A++++NPN QLAQALP NCGITLP  VSPNVDCSKI
Sbjct: 61  AIQATASTTADKQAACNCIKSASKQINPNPQLAQALPANCGITLPFAVSPNVDCSKI 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725739|ref|NP_001236847.1| uncharacterized protein LOC100306055 [Glycine max] gi|255627401|gb|ACU14045.1| unknown [Glycine max]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 82/95 (86%)

Query: 24  SEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAA 83
           SEAAISCSDV+KDLRPCV+YL SGSG+PPAACCSGA ALAS AT++ DKK AC CIK+ +
Sbjct: 45  SEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSEDKKAACNCIKSTS 104

Query: 84  QKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           + +N NSQLAQALP NCGITLPV +SPN DCSK+ 
Sbjct: 105 KSININSQLAQALPGNCGITLPVAISPNADCSKVG 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557076|ref|XP_003546844.1| PREDICTED: LOW QUALITY PROTEIN: non-specific lipid-transfer protein 8-like [Glycine max]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 82/94 (87%)

Query: 24  SEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAA 83
           SEAAISCSDV+KDLRPCV+YL SGSG+PPAACCSGA ALAS AT++ DKK AC CIK+ +
Sbjct: 44  SEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSEDKKAACNCIKSTS 103

Query: 84  QKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           + +N NSQLAQALP NCGITLPV +SPN DCSK+
Sbjct: 104 KSININSQLAQALPGNCGITLPVAISPNADCSKV 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581811|ref|XP_002531706.1| Nonspecific lipid-transfer protein precursor, putative [Ricinus communis] gi|223528649|gb|EEF30665.1| Nonspecific lipid-transfer protein precursor, putative [Ricinus communis] gi|255957398|emb|CBA13553.1| putative nonspecific lipid transfer protein precursor [Ricinus communis]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 98/117 (83%), Gaps = 1/117 (0%)

Query: 1   MNSSRVVVSAIAALIMFLFLTPK-SEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGA 59
           M S  + VSA+A ++M L LT   SEAAISCSDV+KDLRPCVNYL +G+G PPAACC+GA
Sbjct: 1   MKSVSLAVSAMATVMMLLLLTTSVSEAAISCSDVIKDLRPCVNYLVNGTGTPPAACCAGA 60

Query: 60  SALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSK 116
           SALAS AT+TADK+ AC CIKTAAQ++NPN+QLAQALP NCGI+LP  +SPN DCSK
Sbjct: 61  SALASAATTTADKRAACACIKTAAQQLNPNAQLAQALPANCGISLPYTISPNFDCSK 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514249|gb|AFK45186.1| unknown [Lotus japonicus]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 87/110 (79%)

Query: 9   SAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATS 68
           SA +AL++ + L   SEAAISCSDV+KDL+PCV+YL SGSGKPP ACCSGA ALAS  ++
Sbjct: 5   SAFSALVLLMLLVSASEAAISCSDVIKDLKPCVSYLVSGSGKPPGACCSGAKALASAVST 64

Query: 69  TADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           + DKK AC CIK+ A+ +  NSQLA+ALP NCGI +P+ VSP+ DCSK+ 
Sbjct: 65  SEDKKAACNCIKSTAKSIKMNSQLAKALPGNCGINVPINVSPDADCSKVG 114

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798126|emb|CAN76145.1| hypothetical protein VITISV_034315 [Vitis vinifera]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 93/116 (80%)

Query: 1   MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGAS 60
           M  S V V A A L++ + L P +EAAI+CSDV+KDLRPCVNYL +GSG PPAACC+GAS
Sbjct: 1   MKYSSVAVPATATLMLLIVLAPAAEAAIACSDVIKDLRPCVNYLVNGSGMPPAACCTGAS 60

Query: 61  ALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSK 116
            LAS+A+++ADKK AC CIKT A+K+NPN QLA+ LP NC I+LP  VSPNVDCSK
Sbjct: 61  NLASSASTSADKKAACECIKTTAKKLNPNPQLAKGLPGNCKISLPFTVSPNVDCSK 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450261|ref|XP_002269620.1| PREDICTED: non-specific lipid-transfer protein 8-like [Vitis vinifera]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 94/117 (80%)

Query: 1   MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGAS 60
           M  S V V A A L++ + L P +EAAI+CSDV+KDLRPCVNYL +GSG PPAACC+GAS
Sbjct: 1   MKYSSVAVPATATLMLLIVLAPAAEAAIACSDVIKDLRPCVNYLVNGSGMPPAACCTGAS 60

Query: 61  ALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
            LAS+A+++ADKK AC CIKTAA+K+NPN QLA+ LP NC I+LP  VS NVDCSKI
Sbjct: 61  NLASSASTSADKKAACECIKTAAKKLNPNPQLAKGLPGNCKISLPFTVSANVDCSKI 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106575|ref|XP_002314213.1| predicted protein [Populus trichocarpa] gi|222850621|gb|EEE88168.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/106 (73%), Positives = 92/106 (86%)

Query: 11  IAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTA 70
           +AAL+MFL L P S+AAISCSDV+KDLRPCVNYL SG+GKPP+ACC+GASAL S A+STA
Sbjct: 1   MAALMMFLLLAPTSDAAISCSDVIKDLRPCVNYLTSGTGKPPSACCAGASALQSAASSTA 60

Query: 71  DKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSK 116
           DKK AC CIK+A++ +NPN QLAQALP NCGI LP  +SP+VDCSK
Sbjct: 61  DKKAACECIKSASKSLNPNPQLAQALPANCGINLPYTISPSVDCSK 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451153|ref|XP_003595853.1| Non-specific lipid-transfer protein [Medicago truncatula] gi|355484901|gb|AES66104.1| Non-specific lipid-transfer protein [Medicago truncatula]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 90/117 (76%), Gaps = 3/117 (2%)

Query: 1   MNSSRVVVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPAACCSGAS 60
           M SS +   A +AL++ +F+   SEAAISCSDV+KDL+PCV+YL SGSG+PPAACCSGA 
Sbjct: 1   MKSSLI---AFSALVLLIFVASNSEAAISCSDVIKDLKPCVSYLVSGSGQPPAACCSGAK 57

Query: 61  ALASTATSTADKKTACGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           ALAS  +++ DKK AC CIK+ ++ +  NSQLAQAL  NCGI  P+ +SP+ DCSK+
Sbjct: 58  ALASAVSTSEDKKAACNCIKSTSKSIKINSQLAQALAGNCGINTPITISPDADCSKV 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2062116	116	AT2G18370 [Arabidopsis thalian	0.940	0.956	0.407	1.4e-18
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.847	0.892	0.291	4.1e-10
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.347	0.336	0.285	1.4e-09
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.872	0.895	0.285	3.6e-09
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.881	0.873	0.254	2e-08
TAIR|locus:2181022	116	AT5G01870 [Arabidopsis thalian	0.923	0.939	0.307	5.3e-08
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.771	0.764	0.311	2.3e-07
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.745	0.967	0.276	6.1e-07
TAIR|locus:2055828	123	LTP "lipid transfer protein" [	0.779	0.747	0.278	9e-06
TAIR|locus:1006230669	171	AT1G03103 "AT1G03103" [Arabido	0.381	0.263	0.369	1.1e-05

TAIR|locus:2062116 AT2G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 46/113 (40%), Positives = 64/113 (56%)

Query:     7 VVSAIAAL-IMFLFLTPK-SEAAISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXX 64
             V+  +A + ++ +F  P+ SE+AISCS VL+DL+PCV+YL SGSG PP            
Sbjct:     3 VLKCLAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAA 62

Query:    65 XXXXXXXXXXXXGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
                          CIK+ A  +    +LAQAL +NCG +LPV  SP VDC+ +
Sbjct:    63 ATTTSADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 30/103 (29%), Positives = 50/103 (48%)

Query:    15 IMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXX 74
             ++ +F+    +AAI+C  V   L PC+ YL  G   PP                      
Sbjct:    12 VLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQA 71

Query:    75 XXGCIKTAAQKMNPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
                C+++AA+ +NP+  LA  LP  CG+++P P+S + +C+ I
Sbjct:    72 CR-CLQSAAKGVNPS--LASGLPGKCGVSIPYPISTSTNCATI 111

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 76 (31.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query:    78 CIKTAAQKMNP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
             C+K+ A  +   N      +P  CG+++P P+S + +C+ +N
Sbjct:    81 CLKSLATSIKSINMGKVSGVPGKCGVSVPFPISMSTNCNNVN 122

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/105 (28%), Positives = 47/105 (44%)

Query:    14 LIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXX 73
             L++ + +    +AAISC  V   L PC  YL  G   PP                     
Sbjct:    11 LVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQ 70

Query:    74 XXXGCIKTAAQKMNP-NSQLAQALPTNCGITLPVPVSPNVDCSKI 117
                 CI++ A+ ++  N  LA  LP  CG+++P P+S + +C+ I
Sbjct:    71 ACR-CIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/106 (25%), Positives = 49/106 (46%)

Query:    14 LIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXX 73
             +++ +++   +E+ I C  V   L  C+ YL + SG  P                     
Sbjct:    12 IVLTIYMASPTESTIQCGTVTSTLAQCLTYL-TNSGPLPSQCCVGVKSLYQLAQTTPDRK 70

Query:    74 XXXGCIKTAAQKMNP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
                 C+K A +++   N+ L  ALPT CG+++P P+S + +C  I+
Sbjct:    71 QVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSIS 116

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2181022 AT5G01870 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 35/114 (30%), Positives = 52/114 (45%)

Query:     7 VVSAIAALIMFLFLTPKSEAAISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXX 66
             VV  +  L+  +F    SEAAISC+ V  +L PCV Y+  G G  P              
Sbjct:     4 VVLPLCLLLASIFAWG-SEAAISCNAVQANLYPCVVYVVQG-GAIPYSCCNGIRMLSKQA 61

Query:    67 XXXXXXXXXXGCIKTAAQKMNPNS---QLAQALPTNCGITLPVPVSPNVDCSKI 117
                        CIK+   +++ +S   + A ALP  CG+ LP  + P+ +C+ I
Sbjct:    62 TSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 29/93 (31%), Positives = 39/93 (41%)

Query:    27 AISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM 86
             AI+C  V   L  C+ YLK+G G P                          C+K+ A  +
Sbjct:    28 AIACPQVNMYLAQCLPYLKAG-GNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTI 86

Query:    87 -NPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
                N   A+ LP  CG+ + VP S  VDC+ IN
Sbjct:    87 PGINDDFAKQLPAKCGVNIGVPFSKTVDCNSIN 119

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 26/94 (27%), Positives = 43/94 (45%)

Query:    28 ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAA---Q 84
             ++C  V  +L  C+ +L+ G   PP                         C+K AA   +
Sbjct:     1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCS-CLKAAAGAVR 59

Query:    85 KMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
              +NPN+  A+ALP  CG+ +P  +S + +C+ IN
Sbjct:    60 GINPNN--AEALPGKCGVNIPYKISTSTNCNSIN 91

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2055828 LTP "lipid transfer protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 27/97 (27%), Positives = 41/97 (42%)

Query:    24 SEAAISCSDVLKDLRPCVNYLKSGS-GKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTA 82
             ++AA+SC +V  +L+PC  YL +G    P                          CIK A
Sbjct:    23 AKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNA 82

Query:    83 AQKMNP--NSQLAQALPTNCGITLP--VPVSPNVDCS 115
             A+ + P  N+  A  +P  CGI +P    +  N  C+
Sbjct:    83 ARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:1006230669 AT1G03103 "AT1G03103" [Arabidopsis thaliana (taxid:3702)]

 Score = 75 (31.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query:     7 VVSAIAALIMFLFLTPKSEAA-ISCSDVLKDLRPCVNYLKSGSGKP 51
             ++ AI AL++  FL   +      C D L  L PC+ YL  GS  P
Sbjct:     1 MILAILALVIATFLYGGATTVQAGCRDTLTSLSPCLYYLNGGSSSP 46

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPW9	NLTP8_ARATH	No assigned EC number	0.5229	0.9237	0.9396	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_148000018 hypothetical protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) (106 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	5e-27
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	2e-08
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	4e-04

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 95.1 bits (237), Expect = 5e-27
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM- 86
           ISC  V   L PC+ YL  G   P  ACCSG  +L   A +TAD++ AC C+K+AA  + 
Sbjct: 1   ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS 60

Query: 87  NPNSQLAQALPTNCGITLPVPVSPNVDCS 115
             N   A  LP  CG+++P P+SP+ DCS
Sbjct: 61  GLNPGRAAGLPGKCGVSIPYPISPSTDCS 89

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 47.2 bits (112), Expect = 2e-08
 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 30  CSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAA---QKM 86
           C  VL  L PC  YL+ G   P   CCS    L             C C    A      
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQLQ----------AQCRCTAIRAIVLGIE 50

Query: 87  NPNSQLAQALPTNCGITLPVP 107
             N Q A +LP+ CG+ +P  
Sbjct: 51  GINPQAAASLPSMCGVNVPYG 71

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 37  LRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM--NPNSQLAQ 94
           L PC++YL  G+  PP+ CCSG  ++  +     D K  C  +      +    N+  A 
Sbjct: 1   LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRAL 55

Query: 95  ALPTNCGI 102
           ALP  CG+
Sbjct: 56  ALPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.94
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.61
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.46
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.39
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.26
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.09
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.97
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	94.94
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	94.84
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	90.08

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.94  E-value=5.4e-27  Score=153.23  Aligned_cols=88  Identities=45%  Similarity=0.942  Sum_probs=83.0

Q ss_pred             CCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC-CCHHHHhhhhhccCCCCCC
Q 043898           28 ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN-PNSQLAQALPTNCGITLPV  106 (118)
Q Consensus        28 ~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~-in~~~a~~LP~~Cgv~~~~  106 (118)
                      ++|.++...|.||++|+++++..|+++||++++++++.++|+.|++.+|+|++....+++ ||.+|+.+||++||++++|
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence            369999999999999999887789999999999999999999999999999998777786 9999999999999999999


Q ss_pred             CCCCCcCCC
Q 043898          107 PVSPNVDCS  115 (118)
Q Consensus       107 ~i~~~~dC~  115 (118)
                      +|++++||+
T Consensus        81 ~i~~~~dC~   89 (89)
T cd01960          81 PISPSTDCS   89 (89)
T ss_pred             CCCCCCCCC
Confidence            999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.61  E-value=7.1e-16  Score=97.43  Aligned_cols=66  Identities=26%  Similarity=0.567  Sum_probs=54.2

Q ss_pred             chhhhcCccccHHHHhCCC--CCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC-CCHHHHhhhhhccCCCCC
Q 043898           30 CSDVLKDLRPCVNYLKSGS--GKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN-PNSQLAQALPTNCGITLP  105 (118)
Q Consensus        30 C~~~~~~L~~C~~yl~~~~--~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~-in~~~a~~LP~~Cgv~~~  105 (118)
                      |+..+..|++|++|+++++  ..|+++||+++++++        +  .|+|.+.....++ ||.+|+.+||++||+++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~--~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p   69 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------L--PCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP   69 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------c--CCEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence            5555578999999999875  368999999999853        3  3999886655555 999999999999999987

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.46  E-value=5.7e-14  Score=85.73  Aligned_cols=61  Identities=36%  Similarity=0.852  Sum_probs=49.7

Q ss_pred             ccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCC-CC-CHHHHhhhhhccCC
Q 043898           37 LRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM-NP-NSQLAQALPTNCGI  102 (118)
Q Consensus        37 L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~-~i-n~~~a~~LP~~Cgv  102 (118)
                      |.||++|+++++..|+++||++++++++.     |+++.|.++++..... ++ |.+++..||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            67999999987678999999999999854     5667777777654443 34 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.39  E-value=7.9e-14  Score=91.00  Aligned_cols=72  Identities=32%  Similarity=0.705  Sum_probs=44.0

Q ss_pred             ccCCchhhhcCcccc---HHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCc-CCCCCCHHHHhhhhhccC
Q 043898           26 AAISCSDVLKDLRPC---VNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAA-QKMNPNSQLAQALPTNCG  101 (118)
Q Consensus        26 a~~~C~~~~~~L~~C---~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~-~~~~in~~~a~~LP~~Cg  101 (118)
                      ...+|.   ..|.+|   ..|+.++ ..|+++||++++++.+.     |..+.|..+++.. ..++||.+|+..||++||
T Consensus        18 ~~~~c~---~~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg   88 (96)
T PF14368_consen   18 CCCSCA---NSLLPCCPCLCYVTGG-PAPSAACCSALKSVVQA-----DPPCLCQLLNSPGAPGFGINVTRALALPAACG   88 (96)
T ss_dssp             BTTB-H---CCCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCT
T ss_pred             CcchhH---HHHhccccchhccCCC-CCCCHHHHHHHHHhccC-----CCCCHHHhcCccccccCCcCHHHHHHHHHHcC
Confidence            344553   356666   7888854 78999999999998532     3445555555544 455699999999999999


Q ss_pred             CCCCC
Q 043898          102 ITLPV  106 (118)
Q Consensus       102 v~~~~  106 (118)
                      ++.+.
T Consensus        89 ~~~~~   93 (96)
T PF14368_consen   89 VPVPP   93 (96)
T ss_dssp             SS-S-
T ss_pred             CCCCC
Confidence            99873

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.26  E-value=7.2e-12  Score=77.91  Aligned_cols=59  Identities=29%  Similarity=0.653  Sum_probs=48.5

Q ss_pred             cCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC--CCHHHHhhhhhccCCCCC
Q 043898           35 KDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN--PNSQLAQALPTNCGITLP  105 (118)
Q Consensus        35 ~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~--in~~~a~~LP~~Cgv~~~  105 (118)
                      +.|.+|++|++++ ..||++||+.+|+.           ..|+|.+.....++  ||.+++.+||++||+++|
T Consensus         4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~-----------~~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGG-SPPSAACCAKLKEQ-----------QSCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCC-CCCCHHHHHHHhcC-----------CCCeeeeecCccHHhhcCcHHHHHHHHHcCCCCC
Confidence            4799999999977 68999999999982           26888764334443  999999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.09  E-value=1.7e-10  Score=71.56  Aligned_cols=68  Identities=37%  Similarity=0.829  Sum_probs=53.7

Q ss_pred             chhhhcCccccHHHHhCC--CCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC------CCHHHHhhhhhccC
Q 043898           30 CSDVLKDLRPCVNYLKSG--SGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN------PNSQLAQALPTNCG  101 (118)
Q Consensus        30 C~~~~~~L~~C~~yl~~~--~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~------in~~~a~~LP~~Cg  101 (118)
                      |.+....+.+|.+|++++  ...|+..||++++.+.         ...|+|........+      ++..++.+||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            566777888999999986  4578899999999984         257999764322222      48999999999999


Q ss_pred             CCCCC
Q 043898          102 ITLPV  106 (118)
Q Consensus       102 v~~~~  106 (118)
                      +..++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            99875

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.97  E-value=1.1e-11  Score=80.23  Aligned_cols=64  Identities=31%  Similarity=0.692  Sum_probs=50.4

Q ss_pred             cCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCC-----------CCCCHHHHhhhhhccCCC
Q 043898           35 KDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQK-----------MNPNSQLAQALPTNCGIT  103 (118)
Q Consensus        35 ~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~-----------~~in~~~a~~LP~~Cgv~  103 (118)
                      ..+.+|.+|++++...|+..||++|+++.        +++.|..++..+.+           ..++..++..||+.||++
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~--------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~   84 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLD--------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS   84 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHHh--------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence            45899999999876679999999999995        23455555543333           138899999999999999


Q ss_pred             CCC
Q 043898          104 LPV  106 (118)
Q Consensus       104 ~~~  106 (118)
                      +++
T Consensus        85 ~~~   87 (90)
T PF00234_consen   85 PPY   87 (90)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            987

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=94.94  E-value=0.043  Score=35.66  Aligned_cols=76  Identities=25%  Similarity=0.491  Sum_probs=49.1

Q ss_pred             CchhhhcCccccHHHHhCC----CCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC--CCHH-HHhhhhhccC
Q 043898           29 SCSDVLKDLRPCVNYLKSG----SGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN--PNSQ-LAQALPTNCG  101 (118)
Q Consensus        29 ~C~~~~~~L~~C~~yl~~~----~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~--in~~-~a~~LP~~Cg  101 (118)
                      .|......|..|..-+..-    +..|..+||.-++.+.+.      .-++|+|-...++.++  +|.. ++..|-..||
T Consensus         3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CG   76 (85)
T cd01958           3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCG   76 (85)
T ss_pred             CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHc
Confidence            3554445777888877421    235668999999999754      2478999754433333  3333 3456677899


Q ss_pred             CCCCCCCCCCcCC
Q 043898          102 ITLPVPVSPNVDC  114 (118)
Q Consensus       102 v~~~~~i~~~~dC  114 (118)
                      ...|    ++|.|
T Consensus        77 k~~P----~gf~C   85 (85)
T cd01958          77 RNVP----PGFTC   85 (85)
T ss_pred             CcCC----CCCcC
Confidence            9987    55554

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=94.84  E-value=0.013  Score=38.14  Aligned_cols=75  Identities=28%  Similarity=0.506  Sum_probs=48.4

Q ss_pred             chhhhcCccccHHHHhC----CCCCCcHhhhHHHHhhhhhcccccCCcccceeec--cCcCC-CCCCHH-HHhhhhhccC
Q 043898           30 CSDVLKDLRPCVNYLKS----GSGKPPAACCSGASALASTATSTADKKTACGCIK--TAAQK-MNPNSQ-LAQALPTNCG  101 (118)
Q Consensus        30 C~~~~~~L~~C~~yl~~----~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~--~~~~~-~~in~~-~a~~LP~~Cg  101 (118)
                      |......|.-|.+.+.-    .+..+..+||.-++.+.+.      .-+.|+|-.  ....+ .++|.. .+..|-..||
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG   75 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACG   75 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence            44444478889888811    1134678999999999743      236899954  33233 223232 3567888999


Q ss_pred             CCCCCCCCCCcCC
Q 043898          102 ITLPVPVSPNVDC  114 (118)
Q Consensus       102 v~~~~~i~~~~dC  114 (118)
                      ...|    ++|+|
T Consensus        76 k~~p----~gf~C   84 (85)
T PF14547_consen   76 KTVP----SGFTC   84 (85)
T ss_pred             CcCc----CCCcC
Confidence            9887    77776

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=90.08  E-value=0.22  Score=32.89  Aligned_cols=17  Identities=24%  Similarity=0.182  Sum_probs=8.2

Q ss_pred             CCchhhHHHHHHHHHHHH
Q 043898            1 MNSSRVVVSAIAALIMFL   18 (118)
Q Consensus         1 m~~~~~~~~~~~~~~~~~   18 (118)
                      |+| |.|+.+..+|.+++
T Consensus         1 MaS-K~~llL~l~LA~lL   17 (95)
T PF07172_consen    1 MAS-KAFLLLGLLLAALL   17 (95)
T ss_pred             Cch-hHHHHHHHHHHHHH
Confidence            884 44444444433333

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		8e-06
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		3e-05
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		5e-05
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		7e-05
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		7e-05
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		2e-04
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		5e-04
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		5e-04
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		5e-04

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 27  AISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM 86
           AISC  V   + PC++Y +     P                          C+K AA  +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 87  NP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           +  N+  A ++P+ CG+++P  +S + DCS++N
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKMN 87
           I+C  V   + PC+ Y + G+G P                          C+K AA+ + 
Sbjct: 1   ITCGQVNSAVGPCLTYARGGAG-PSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 88  P-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
             N+  A ++P+ CG+++P  +S ++DCS+++
Sbjct: 60  GLNAGNAASIPSKCGVSVPYTISASIDCSRVS 91

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM- 86
           I C  V   +RPC++Y++ G G P                          C+K  A+ + 
Sbjct: 1   IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 87  NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           N N   A+++P  CG+ LP  +S N+DCS++
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 27  AISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM 86
           AI+C  V  +L PC+ YL++    P                          C+K+AA  +
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 87  NP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           +  N   A  LP+ CG+ +P  +SP+ DCSK+ 
Sbjct: 59  SGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 27  AISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM 86
           AISC  V  DL PC+ YL  G G  P                         C+K+AA  +
Sbjct: 1   AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACN-CLKSAAGSI 59
Query: 87  NP-NSQLAQALPTNCGITLPVPVSPNVDCSKI 117
              N+  A ALP  CG+ +P  +S   +C+ +
Sbjct: 60  TKLNTNNAAALPGKCGVNIPYKISTTTNCNTV 91

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 29  SCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM-N 87
            C  V   +RPC++Y++ G G P                          C+K  A+ + N
Sbjct: 2   DCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 88  PNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
            N   A+++P  CG+ LP  +S N+DCS++
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM- 86
           ++C  V   ++PC+ Y++ G G P                          C+K  A+ + 
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 87  NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           N N   A ++P+ C + +P  +SP++DCS+I
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAA---Q 84
           ++C  V  +L  C+ +L+ G   PP                         C+K AA   +
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCS-CLKAAAGAVR 59
Query: 85  KMNPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
            +NPN+  A+ALP  CG+ +P  +S + +C+ IN
Sbjct: 60  GINPNN--AEALPGKCGVNIPYKISTSTNCNSIN 91

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPXXXXXXXXXXXXXXXXXXXXXXXXGCIKTAAQKM- 86
           ++C  V   ++PC+ Y++ G G P                          C+K  A+ + 
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 87  NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           N N   A ++P+ C + +P  +SP++DCS+I
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	2e-27
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	1e-25
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	1e-25
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	2e-25
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	9e-25

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 95.7 bits (238), Expect = 2e-27
 Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 27  AISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM 86
           AISC  V   + PC++Y +     P A CCSG  +L + A +TAD++ AC C+K AA  +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 87  NP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           +  N+  A ++P+ CG+++P  +S + DCS++N
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 91.1 bits (226), Expect = 1e-25
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM- 86
           ++C  V  +L  C+ +L+   G  P +CC+G   + +++ +TAD++  C C+K AA  + 
Sbjct: 1   MTCGQVQGNLAQCIGFLQ-KGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59

Query: 87  NPNSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
             N   A+ALP  CG+ +P  +S + +C+ IN
Sbjct: 60  GINPNNAEALPGKCGVNIPYKISTSTNCNSIN 91

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 91.1 bits (226), Expect = 1e-25
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM- 86
           I C  V   +RPC++Y++ G   P   CC G   L + A S +D+++AC C+K  A+ + 
Sbjct: 1   IDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59

Query: 87  NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           N N   A+++P  CG+ LP  +S N+DCS++
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 90.7 bits (225), Expect = 2e-25
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM- 86
           I+C  V   L PC+ Y++ G G  P ACC+G   + + A +T D++ AC C+K  +  + 
Sbjct: 2   ITCGQVSSSLAPCIPYVR-GGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60

Query: 87  NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
             N   A ALP  CG+++P  +S + +C+ +
Sbjct: 61  GVNPNNAAALPGKCGVSIPYKISASTNCATV 91

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 88.7 bits (220), Expect = 9e-25
 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 27  AISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM 86
           AI+C  V  +L PC+ YL++    P   CC G  AL ++A +T D++ AC C+K+AA  +
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58

Query: 87  -NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
              N   A  LP+ CG+ +P  +SP+ DCSK+
Sbjct: 59  SGINLGKAAGLPSTCGVNIPYKISPSTDCSKV 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.97
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.96
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.96
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.96
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.96
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.95
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.62
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.42
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.36
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	94.47
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	86.83

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.97  E-value=2.2e-32  Score=179.80  Aligned_cols=91  Identities=40%  Similarity=0.876  Sum_probs=85.6

Q ss_pred             cCCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC-CCHHHHhhhhhccCCCCC
Q 043898           27 AISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN-PNSQLAQALPTNCGITLP  105 (118)
Q Consensus        27 ~~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~-in~~~a~~LP~~Cgv~~~  105 (118)
                      +++|+++...|.||++|++|+ +.|++.||+++++|++.++|+.|||++|+|+++.+..++ ||.+|+.+||++||+++|
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~-~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p   79 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGG-PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP   79 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTS-SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred             CCCHHHHHHHHHhHHHHHcCC-CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence            578999999999999999987 579999999999999999999999999999998766665 999999999999999999


Q ss_pred             CCCCCCcCCCCCC
Q 043898          106 VPVSPNVDCSKIN  118 (118)
Q Consensus       106 ~~i~~~~dC~~i~  118 (118)
                      |||+|++||++|+
T Consensus        80 ~~Is~~~dC~~v~   92 (93)
T 2ljo_A           80 YKISTTTNCNTVK   92 (93)
T ss_dssp             SCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCCCC
Confidence            9999999999996

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.96  E-value=1.9e-31  Score=175.21  Aligned_cols=92  Identities=39%  Similarity=0.886  Sum_probs=86.0

Q ss_pred             cCCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC-CCHHHHhhhhhccCCCCC
Q 043898           27 AISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN-PNSQLAQALPTNCGITLP  105 (118)
Q Consensus        27 ~~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~-in~~~a~~LP~~Cgv~~~  105 (118)
                      +++|+++...|.||++|++++++.|+++||++++++++.++|+.|||..|+|++.....++ ||.+++.+||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            4689999999999999999887779999999999999999999999999999987767774 999999999999999999


Q ss_pred             CCCCCCcCCCCCC
Q 043898          106 VPVSPNVDCSKIN  118 (118)
Q Consensus       106 ~~i~~~~dC~~i~  118 (118)
                      |+|++++||++|+
T Consensus        81 ~~is~~~dC~~v~   93 (93)
T 1afh_A           81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCSSSCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999996

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.96  E-value=3.7e-31  Score=173.24  Aligned_cols=90  Identities=40%  Similarity=0.856  Sum_probs=83.9

Q ss_pred             cCCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCC-CCCHHHHhhhhhccCCCCC
Q 043898           27 AISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM-NPNSQLAQALPTNCGITLP  105 (118)
Q Consensus        27 ~~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~-~in~~~a~~LP~~Cgv~~~  105 (118)
                      +++|+++...|.||++|++++++ |+ +||++++++++.++|+.|||..|+|+++....+ +||.+++.+||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p   78 (91)
T 1t12_A            1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIP   78 (91)
T ss_dssp             CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCC
Confidence            46899999999999999998866 88 999999999999999999999999998766667 4999999999999999999


Q ss_pred             CCCCCCcCCCCCC
Q 043898          106 VPVSPNVDCSKIN  118 (118)
Q Consensus       106 ~~i~~~~dC~~i~  118 (118)
                      |+|++++||++|+
T Consensus        79 ~~is~~~dC~~v~   91 (91)
T 1t12_A           79 YKISPSTDCSKVQ   91 (91)
T ss_dssp             SCSSSSSCCTTCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999996

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.96  E-value=8.7e-31  Score=171.14  Aligned_cols=89  Identities=38%  Similarity=0.908  Sum_probs=83.4

Q ss_pred             CCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC-CCHHHHhhhhhccCCCCCC
Q 043898           28 ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN-PNSQLAQALPTNCGITLPV  106 (118)
Q Consensus        28 ~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~-in~~~a~~LP~~Cgv~~~~  106 (118)
                      ++|+++...|.||++|++++++ |+++||++++++++.++|+.|||..|+|+++....++ ||.+++.+||++||+++||
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~   79 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPY   79 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred             CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999998855 9999999999999999999999999999987777774 9999999999999999999


Q ss_pred             CCCCCcCCCCC
Q 043898          107 PVSPNVDCSKI  117 (118)
Q Consensus       107 ~i~~~~dC~~i  117 (118)
                      +|++++||++|
T Consensus        80 ~is~~~dC~~v   90 (90)
T 1bwo_A           80 TISLNIDCSRV   90 (90)
T ss_dssp             CCCTTCCGGGC
T ss_pred             CCCCCCCCCCC
Confidence            99999999987

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.96  E-value=1.5e-30  Score=170.24  Aligned_cols=90  Identities=33%  Similarity=0.830  Sum_probs=84.2

Q ss_pred             CCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCC-CCCHHHHhhhhhccCCCCCC
Q 043898           28 ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM-NPNSQLAQALPTNCGITLPV  106 (118)
Q Consensus        28 ~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~-~in~~~a~~LP~~Cgv~~~~  106 (118)
                      ++|+++...|.||++|++++++ |+++||++++++++.++|+.|||..|+|+++....+ +||.+++.+||++||+++||
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~   79 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPY   79 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999998855 999999999999999999999999999998777777 49999999999999999999


Q ss_pred             CCCCCcCCCCCC
Q 043898          107 PVSPNVDCSKIN  118 (118)
Q Consensus       107 ~i~~~~dC~~i~  118 (118)
                      +|++++||++|+
T Consensus        80 ~is~~~dC~~v~   91 (91)
T 1siy_A           80 KISTSTNCNSIN   91 (91)
T ss_dssp             CSCTTSCSSTTC
T ss_pred             CCCCCCCCccCC
Confidence            999999999996

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.95  E-value=2.9e-30  Score=169.27  Aligned_cols=91  Identities=33%  Similarity=0.822  Sum_probs=84.4

Q ss_pred             cCCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCC-CCCHHHHhhhhhccCCCCC
Q 043898           27 AISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM-NPNSQLAQALPTNCGITLP  105 (118)
Q Consensus        27 ~~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~-~in~~~a~~LP~~Cgv~~~  105 (118)
                      +++|+++...|.||++|+++++ .|+++||++++++++.++|+.|||..|+|++.....+ +||.+++.+||++||+++|
T Consensus         1 ~~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p   79 (92)
T 2alg_A            1 MITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIP   79 (92)
T ss_dssp             CCCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCC
Confidence            3679999999999999999874 5889999999999999999999999999998766667 4999999999999999999


Q ss_pred             CCCCCCcCCCCCC
Q 043898          106 VPVSPNVDCSKIN  118 (118)
Q Consensus       106 ~~i~~~~dC~~i~  118 (118)
                      |+|++++||++|+
T Consensus        80 ~~is~~~dC~~v~   92 (92)
T 2alg_A           80 YKISASTNCATVK   92 (92)
T ss_dssp             SCSSTTSCGGGCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999986

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.62  E-value=3.7e-17  Score=103.40  Aligned_cols=70  Identities=24%  Similarity=0.484  Sum_probs=59.3

Q ss_pred             cCCchhhhcCccccHHHHhCC-CCCCcHhhhHHHHhhhhhcccccCCcccceeeccC---cCCCCCCHHHHhhhhhccCC
Q 043898           27 AISCSDVLKDLRPCVNYLKSG-SGKPPAACCSGASALASTATSTADKKTACGCIKTA---AQKMNPNSQLAQALPTNCGI  102 (118)
Q Consensus        27 ~~~C~~~~~~L~~C~~yl~~~-~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~---~~~~~in~~~a~~LP~~Cgv  102 (118)
                      +.+|+++...|.||++|++++ .+.|+++||+++|+.        |  ..|+|.+..   ..+++||.+++.+||++||+
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~--------~--~~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv   71 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------D--FACLCGYKNSPWLGSFGVDPELASALPKQCGL   71 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC--------C--HHHHHTTTTCHHHHHHTBCHHHHHHHHHHTTC
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc--------C--cCCcCcccCCcchhhcCcCHHHHHHHHHHcCC
Confidence            467999999999999999974 468999999999982        3  389998765   44557999999999999999


Q ss_pred             CCCC
Q 043898          103 TLPV  106 (118)
Q Consensus       103 ~~~~  106 (118)
                      ++||
T Consensus        72 ~~p~   75 (77)
T 2rkn_A           72 ANAP   75 (77)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9885

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.42  E-value=3.6e-14  Score=87.52  Aligned_cols=59  Identities=31%  Similarity=0.601  Sum_probs=47.6

Q ss_pred             cCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCccccee--eccCcCCCCCCHHHHhhhhhccCCCCC
Q 043898           35 KDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGC--IKTAAQKMNPNSQLAQALPTNCGITLP  105 (118)
Q Consensus        35 ~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C--~~~~~~~~~in~~~a~~LP~~Cgv~~~  105 (118)
                      +.|.||++|++++ +.|+++||+++|+.           ..|+|  +++......||.+++.+||++||+++|
T Consensus         5 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSG-AKPSGECCGNLRAQ-----------QGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTC-CCCCHHHHHHHHHH-----------SSHHHHGGGCSTTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCC-CCCCHHHHHhhCCC-----------CCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence            4789999999987 57999999999972           58999  444222112899999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.36  E-value=9.3e-14  Score=86.10  Aligned_cols=59  Identities=34%  Similarity=0.643  Sum_probs=47.5

Q ss_pred             cCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCC--CCCHHHHhhhhhccCCCCC
Q 043898           35 KDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM--NPNSQLAQALPTNCGITLP  105 (118)
Q Consensus        35 ~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~--~in~~~a~~LP~~Cgv~~~  105 (118)
                      +.|.||++|++++ ..|+++||+++|+.           ..|+|.+.....+  .||.+++.+||++||+++|
T Consensus         6 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIAGG-ARPTAACCSSLRAQ-----------QGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHTTC-CSTTHHHHHHHHHH-----------HHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             hhcccCHHHHcCC-CCCCHHHHHhhCCC-----------CCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence            3799999999987 57999999999973           4799943222223  2999999999999999876

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=94.47  E-value=0.019  Score=35.94  Aligned_cols=72  Identities=28%  Similarity=0.544  Sum_probs=50.1

Q ss_pred             CCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCCCCHHHHhh-hhhccCCCCCC
Q 043898           28 ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMNPNSQLAQA-LPTNCGITLPV  106 (118)
Q Consensus        28 ~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~in~~~a~~-LP~~Cgv~~~~  106 (118)
                      ..|.    +|..|.+-+.+. ..|...||.-++.+.+.      .-++|+|-...+.++ +|.....+ |-..||...| 
T Consensus         6 ~~CP----kLgvCanvL~g~-~~~~~~CC~Ll~GL~dl------eAAvCLCtaik~Lgi-lnlpv~L~llln~Cgk~~P-   72 (80)
T 1hyp_A            6 PSCP----DLSICLNILGGS-LGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI-LNLNRNLQLILNSCGRSYP-   72 (80)
T ss_dssp             CCSC----CCGGGGGGGGTC-CTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC-SCHHHHHHHHHHHTTCSSC-
T ss_pred             CCCC----chhHHHHHhCcC-CCCCCccchhhhCcchh------hhhhhhhhhccccce-eecChhHHHHHHHhCCcCc-
Confidence            3476    688899988543 34778999999998754      236899963222233 57766554 6678999988 


Q ss_pred             CCCCCcCCC
Q 043898          107 PVSPNVDCS  115 (118)
Q Consensus       107 ~i~~~~dC~  115 (118)
                         +.|.|.
T Consensus        73 ---~gF~C~   78 (80)
T 1hyp_A           73 ---SNATCP   78 (80)
T ss_dssp             ---CCCCCS
T ss_pred             ---CCCCCC
Confidence               777775

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=86.83  E-value=0.033  Score=44.40  Aligned_cols=50  Identities=18%  Similarity=0.514  Sum_probs=30.9

Q ss_pred             HhhhHHHHhhhhhcccccCCcccceee--ccCcC-------C-C--CCCHHHHhhhhhccCCCCC--CCCCC
Q 043898           53 AACCSGASALASTATSTADKKTACGCI--KTAAQ-------K-M--NPNSQLAQALPTNCGITLP--VPVSP  110 (118)
Q Consensus        53 ~~CC~~l~~~~~~a~t~~dr~~~C~C~--~~~~~-------~-~--~in~~~a~~LP~~Cgv~~~--~~i~~  110 (118)
                      .+||+.|+.+.        .+..|+|-  +..+.       + .  ..-..+|..||..||+..|  .+|++
T Consensus       429 ~~cc~~l~~~~--------~~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~~~~  492 (500)
T 3ob4_A          429 ERCCNELNEFE--------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDV  492 (500)
T ss_dssp             HHHHHHHGGGT--------TCHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCCCC-
T ss_pred             HHHHHHHHhCC--------cccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCCccC
Confidence            58999999974        12567773  32211       0 1  1114559999999999866  45544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	1e-24
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	1e-22

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 87.2 bits (216), Expect = 1e-24
 Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 27  AISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM 86
           AISC  V   + PC++Y +     P A CCSG  +L + A +TAD++ AC C+K AA  +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 87  NP-NSQLAQALPTNCGITLPVPVSPNVDCSKIN 118
           +  N+  A ++P+ CG+++P  +S + DCS++N
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 82.6 bits (204), Expect = 1e-22
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 28  ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQK-M 86
           ++C  V   ++PC+ Y+  G   P   CC+G   L + A S+ D++T C C+K  A+   
Sbjct: 1   LNCGQVDSKMKPCLTYV-QGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59

Query: 87  NPNSQLAQALPTNCGITLPVPVSPNVDCSKI 117
           N N   A ++P+ C + +P  +SP++DCS+I
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.97
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.92
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.82
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	92.33

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=2.7e-32  Score=177.72  Aligned_cols=92  Identities=39%  Similarity=0.884  Sum_probs=86.3

Q ss_pred             cCCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCC-CCCHHHHhhhhhccCCCCC
Q 043898           27 AISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKM-NPNSQLAQALPTNCGITLP  105 (118)
Q Consensus        27 ~~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~-~in~~~a~~LP~~Cgv~~~  105 (118)
                      +++|+++...|.||++||+|+++.|++.||++++++++.++|+.|||++|+|+++....+ +||.+|+.+||++||+++|
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~   80 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCC
Confidence            578999999999999999998778999999999999999999999999999999866555 5999999999999999999


Q ss_pred             CCCCCCcCCCCCC
Q 043898          106 VPVSPNVDCSKIN  118 (118)
Q Consensus       106 ~~i~~~~dC~~i~  118 (118)
                      |||++++||++|+
T Consensus        81 ~pis~~~dCs~i~   93 (93)
T d1fk5a_          81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCcCC
Confidence            9999999999996

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.96  E-value=3.5e-31  Score=171.80  Aligned_cols=90  Identities=33%  Similarity=0.861  Sum_probs=84.0

Q ss_pred             CCchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC-CCHHHHhhhhhccCCCCCC
Q 043898           28 ISCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN-PNSQLAQALPTNCGITLPV  106 (118)
Q Consensus        28 ~~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~-in~~~a~~LP~~Cgv~~~~  106 (118)
                      ++|+++...|.||++|++|+ ++|++.||+++++|++.++|+.|||++|+|++.....+. ||.+|+++||++||+++||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~-~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~   79 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPY   79 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCS
T ss_pred             CCHHHHHHHHHhhHHHHcCC-CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCC
Confidence            57999999999999999987 689999999999999999999999999999998665554 9999999999999999999


Q ss_pred             CCCCCcCCCCCC
Q 043898          107 PVSPNVDCSKIN  118 (118)
Q Consensus       107 ~i~~~~dC~~i~  118 (118)
                      ||+|++||++|+
T Consensus        80 pis~~~dC~~i~   91 (91)
T d1mida_          80 TISPDIDCSRIY   91 (91)
T ss_dssp             CCCTTCCGGGCC
T ss_pred             CCCCCCCCCCCC
Confidence            999999999985

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.92  E-value=2.2e-10  Score=68.81  Aligned_cols=62  Identities=29%  Similarity=0.633  Sum_probs=52.9

Q ss_pred             chhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC--CCHHHHhhhhhccCCCCC
Q 043898           30 CSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN--PNSQLAQALPTNCGITLP  105 (118)
Q Consensus        30 C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~--in~~~a~~LP~~Cgv~~~  105 (118)
                      |+..  .|++|++.++++ ..||.+||+-+|+           |..|+|.+.....++  ||..++..+-..||+++|
T Consensus         2 C~p~--~L~~C~~Ai~~g-~~PS~~CC~kLke-----------Q~~ClC~Y~kdP~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILSG-AKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHHC-CCCCHHHHHHHHH-----------HGGGHHHHTTCTTTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhcC-CCCcHHHHHHHHh-----------cCCccceecCCccHHHHcCCHHHHHHHHhcCCCCC
Confidence            4444  699999999987 5899999999999           457999876666775  899999999999999987

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.82  E-value=1.9e-10  Score=69.38  Aligned_cols=63  Identities=33%  Similarity=0.682  Sum_probs=53.0

Q ss_pred             CchhhhcCccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCC--CCHHHHhhhhhccCCCCC
Q 043898           29 SCSDVLKDLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMN--PNSQLAQALPTNCGITLP  105 (118)
Q Consensus        29 ~C~~~~~~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~--in~~~a~~LP~~Cgv~~~  105 (118)
                      .|+..  .|++|++.++++ ..||.+||+-+|+           |..|+|.+.....++  ||..++..+-..||+++|
T Consensus         2 ~C~p~--~L~~C~~ai~~g-~~PS~~CC~kLke-----------Q~~ClC~Y~k~P~~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAGG-ARPTAACCSSLRA-----------QQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTC-CSTTHHHHHHHHH-----------HHHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hccccHHHHhCC-CCCcHHHHHHHHh-----------cCCccceeccCccHHHHcCCHHHHHHHHhcCCCCC
Confidence            36555  799999999988 5799999999999           347888876666664  999999999999999987

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=92.33  E-value=0.033  Score=32.91  Aligned_cols=69  Identities=26%  Similarity=0.520  Sum_probs=46.0

Q ss_pred             CccccHHHHhCCCCCCcHhhhHHHHhhhhhcccccCCcccceeeccCcCCCCCCHHHHh-hhhhccCCCCCCCCCCCcCC
Q 043898           36 DLRPCVNYLKSGSGKPPAACCSGASALASTATSTADKKTACGCIKTAAQKMNPNSQLAQ-ALPTNCGITLPVPVSPNVDC  114 (118)
Q Consensus        36 ~L~~C~~yl~~~~~~Ps~~CC~~l~~~~~~a~t~~dr~~~C~C~~~~~~~~~in~~~a~-~LP~~Cgv~~~~~i~~~~dC  114 (118)
                      ++.-|.+-+.+. -.+...||.-++.+.+.      .-++|+|-...+..+ +|..... .|-..||...|    ++|.|
T Consensus         5 Klg~C~nvLg~~-~~~~~~CC~Ll~GL~dl------eAAvCLCtaika~~l-lnvpv~l~llln~Cgk~~P----~gF~C   72 (75)
T d1hypa_           5 DLSICLNILGGS-LGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI-LNLNRNLQLILNSCGRSYP----SNATC   72 (75)
T ss_dssp             CCGGGGGGGGTC-CTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC-SCHHHHHHHHHHHTTCSSC----CCCCC
T ss_pred             chhhHHHHhcCc-cCCCCCcchHHhhHHHH------HHHHHHHHHHHHhhh-ccccchHHHHHHHcCCcCc----CCCcC
Confidence            567788877654 34678999999998754      236899964222223 5665443 46678999988    67777


Q ss_pred             CC
Q 043898          115 SK  116 (118)
Q Consensus       115 ~~  116 (118)
                      -+
T Consensus        73 P~   74 (75)
T d1hypa_          73 PR   74 (75)
T ss_dssp             SC
T ss_pred             CC
Confidence            43