Citrus Sinensis ID: 043910
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | 2.2.26 [Sep-21-2011] | |||||||
| O82500 | 1095 | Putative disease resistan | no | no | 0.818 | 0.263 | 0.317 | 6e-25 | |
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.796 | 0.148 | 0.299 | 9e-20 | |
| Q40392 | 1144 | TMV resistance protein N | N/A | no | 0.450 | 0.138 | 0.375 | 1e-15 | |
| Q9FH83 | 1288 | Probable WRKY transcripti | no | no | 0.739 | 0.202 | 0.297 | 3e-15 | |
| Q9FKN7 | 1613 | Protein DA1-related 4 OS= | no | no | 0.807 | 0.176 | 0.254 | 3e-15 | |
| Q9FL92 | 1372 | Probable WRKY transcripti | no | no | 0.705 | 0.181 | 0.303 | 9e-13 | |
| Q9RBS2 | 1024 | Protein PopC OS=Ralstonia | yes | no | 0.538 | 0.185 | 0.293 | 1e-12 | |
| P0CB16 | 1201 | Putative disease resistan | no | no | 0.586 | 0.172 | 0.274 | 2e-12 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.643 | 0.174 | 0.271 | 8e-12 | |
| Q9V780 | 849 | Protein lap1 OS=Drosophil | yes | no | 0.461 | 0.191 | 0.343 | 1e-11 |
| >sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/334 (31%), Positives = 167/334 (50%), Gaps = 45/334 (13%)
Query: 1 GTEEIEGICLDMSKV-EEIHLYSDTFTKMRKLRFLKFYNSS-INGENKCKVSNIQDPV-- 56
GT + GI LDM ++ EE+++ TF +MR L +LKFY SS I+ + K K+ ++ +
Sbjct: 525 GTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSY 584
Query: 57 FPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQI-ITAARNF 115
P++R L W YPL+ PS P LV L + HS +++L G Q L + + ++RN
Sbjct: 585 LPQLRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNL 644
Query: 116 VTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA----IEELPSS 171
PN + KL L+L C L LP+ I N++ +IL + +E +P++
Sbjct: 645 EI-LPN---LMEATKLNRLDLGWCESLVELPSSI---KNLQHLILLEMSCCKKLEIIPTN 697
Query: 172 IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQL--------- 222
I L L L R C RL++ P+ ++ L + G IT++P ++
Sbjct: 698 IN-LPSLEVLHFRYCTRLQTFPEISTNIRLLNLI---GTAITEVPPSVKYWSKIDEICME 753
Query: 223 -----------FSLEEFCLRKTK-FEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLK 270
+ LE+ CLR+ K E IP + +L RL +SYC + SLPKLP ++
Sbjct: 754 RAKVKRLVHVPYVLEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVS 813
Query: 271 ELDADHCAALESLSDLF---SISYDYYIRCFELS 301
L A +C +L+ L F SI + +I C +L
Sbjct: 814 ALTAVNCESLQILHGHFRNKSIHLN-FINCLKLG 846
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 155/337 (45%), Gaps = 56/337 (16%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF--P 58
GT IEGI LDM ++ + F KM LR LK Y S E K VS Q +
Sbjct: 1149 GTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCS--KAEEKHGVSFPQGLEYLPS 1205
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHH-C-------KLSQIIT 110
++R L W YPL SLP +P LV L +P S ++L G + C KL ++
Sbjct: 1206 KLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRL 1265
Query: 111 AARNFVTKTPNPSFIRSL---------------------NKLTILNLSGCSQLKRLPA-- 147
+ + +TK P S +L KL LNL GCS+L+ +P+
Sbjct: 1266 SYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMV 1325
Query: 148 -----EILS-------------AGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRL 189
E+L+ + N++E+ + GT I+E+PSSI+ L L L L + + L
Sbjct: 1326 DLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHL 1385
Query: 190 KSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248
K+LP + KLK L+ L L+GC + + P++ ++ L L +T +++P+++ +L+ L
Sbjct: 1386 KNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTAL 1445
Query: 249 HSFCLSYCERLQSLPKLP-CNLKELDADHCAALESLS 284
R + P N EL + LE L
Sbjct: 1446 DELLFVDSRRNSPVVTNPNANSTELMPSESSKLEILG 1482
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHL 181
PS I L L L++SGCS+L+ LP EI N+ + T I PSSI L++L+ L
Sbjct: 753 PSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIIL 812
Query: 182 ---GLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQ--LPENLGQLFSLEEFCLRKTKFE 236
G +D + P L SL++L L+ C + LPE +G L SL++ L + FE
Sbjct: 813 MFRGFKDGVHFE-FPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFE 871
Query: 237 KIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALE 281
+P+++ L L S L C+RL LP+LP L EL D AL+
Sbjct: 872 HLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALK 916
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Nicotiana glutinosa (taxid: 35889) |
| >sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 142/350 (40%), Gaps = 89/350 (25%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFP-E 59
G+EEIEG+ LD S + L F M LR LK Y S+ P E
Sbjct: 497 GSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCSNPEVHPVINFPTGSLHSLPNE 555
Query: 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQ-------------HHCKLS 106
+R L W YPLKSLP P LV + +P+S +Q+L G + HH
Sbjct: 556 LRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDI 615
Query: 107 QIITAARNF-------VTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMI 159
+ A N T+ N L +L ++NLSGC ++K + EI N+E++
Sbjct: 616 DDLLKAENLEVIDLQGCTRLQNFPAAGRLLRLRVVNLSGCIKIKSV-LEI--PPNIEKLH 672
Query: 160 LNGTAIEELP-----------------------------------SSIECLSRLLHLGLR 184
L GT I LP SS + L +L+ L L+
Sbjct: 673 LQGTGILALPVSTVKPNHRELVNFLTEIPGLSEELERLTSLLESNSSCQDLGKLICLELK 732
Query: 185 DCKRLKSLPK------------GLCKLKS-------LKFLILNGCGIT---QLPENLGQL 222
DC L+SLP G L S LK L L G I QLP++L ++
Sbjct: 733 DCSCLQSLPNMANLDLNVLDLSGCSSLNSIQGFPRFLKQLYLGGTAIREVPQLPQSL-EI 791
Query: 223 FSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKEL 272
+ CLR +P N+ +L L LS C L+++ P NLKEL
Sbjct: 792 LNAHGSCLR-----SLP-NMANLEFLKVLDLSGCSELETIQGFPRNLKEL 835
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 158/401 (39%), Gaps = 116/401 (28%)
Query: 2 TEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIR 61
E IE I LD S V+ + D F M L+FLK YNS + D + E+R
Sbjct: 516 AEHIESIFLDTSNVK-FDVKHDAFKNMFNLKFLKIYNSCSKYISGLNFPKGLDSLPYELR 574
Query: 62 YLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITA---------- 111
L W YPL+SLP LV L +P+S + +LG + L ++I +
Sbjct: 575 LLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDI 634
Query: 112 ---ARNF----------VTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158
A+N + + P+ S L L ++NLSGC+++K N+EE+
Sbjct: 635 LIYAQNIELIDLQGCTGLQRFPDTS---QLQNLRVVNLSGCTEIKCFSG---VPPNIEEL 688
Query: 159 ILNGTAIEELP-----------------------------SSIECLS------------- 176
L GT I E+P +EC++
Sbjct: 689 HLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVMG 748
Query: 177 RLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG----ITQLPENLGQLFSLEEFCLRK 232
+L+ L ++ C L+ LP + L+SLK L L+GC I P NL +L+
Sbjct: 749 KLVCLNMKYCSNLRGLPD-MVSLESLKVLYLSGCSELEKIMGFPRNLKKLY--------- 798
Query: 233 TKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYD 292
+ I + LP+LP +L+ L+A C L+S+ ++ ++
Sbjct: 799 -----VGGTAI----------------RELPQLPNSLEFLNAHGCKHLKSI----NLDFE 833
Query: 293 YYIRCFELSTNYKLDRNELRSILEDALQKIQDMASTTRWKQ 333
R F S Y+ + +E L +AS R KQ
Sbjct: 834 QLPRHFIFSNCYRFSSQVIAEFVEKGL-----VASLARAKQ 869
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 140/303 (46%), Gaps = 54/303 (17%)
Query: 3 EEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSS-----INGENKCKVSNIQDPVF 57
EEIEG+ LD S + + F M LR K Y+S+ +N K +S++ +
Sbjct: 492 EEIEGMFLDTSNLS-FDIKHVAFDNMLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNV-- 548
Query: 58 PEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQ-----------HHCKLS 106
+R L W YPL+ LP P LV + +P+S +++L G + H +L
Sbjct: 549 --LRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLV 606
Query: 107 QI--ITAARNF-------VTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157
I + A+N T+ + L L ++NLSGC+++K P EI N+E
Sbjct: 607 DIDDLLKAQNLEVVDLQGCTRLQSFPATGQLLHLRVVNLSGCTEIKSFP-EI--PPNIET 663
Query: 158 MILNGTAIEELPSSI------ECLSRLLHL-GLRDCKRLKSLPKGLCKLKSLKFLILNGC 210
+ L GT I ELP SI E L+ L + GL L+ LK L L+
Sbjct: 664 LNLQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQ-----SDLKPLTSLM---- 714
Query: 211 GITQLPENLGQLFSLE-EFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNL 269
I+ +N G+L LE C ++ +P N+++L L + LS C L+++ P NL
Sbjct: 715 KISTSYQNPGKLSCLELNDC---SRLRSLP-NMVNLELLKALDLSGCSELETIQGFPRNL 770
Query: 270 KEL 272
KEL
Sbjct: 771 KEL 773
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 45/235 (19%)
Query: 120 PNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLL 179
P+ S + SL KLT+ N S L +LPA+ + GN+ + L+ T + +LP+SI L L
Sbjct: 376 PSASGMSSLQKLTVDN----SSLAKLPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLK 431
Query: 180 HLGLRDCKRLKSLPKGLCKLKSLKFLILNG----------------------CGITQLPE 217
L L+D +L SLP +L L+ L LNG + LP
Sbjct: 432 TLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELPSMGGASSLQTLTVDDTALAGLPA 491
Query: 218 NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDA 274
+ G L +L L T+ ++P N +L L + L ++L +LP L+EL
Sbjct: 492 DFGALRNLAHLSLSNTQLRELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLEELTL 551
Query: 275 DHC-----------AALESL----SDLFSISYDYYIRCFELSTNYKLDRNELRSI 314
+ +AL++L S L SI D I+C L T L +LR++
Sbjct: 552 KNSSVSELPPMGPGSALKTLTVENSPLTSIPADIGIQCERL-TQLSLSNTQLRAL 605
|
Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
| >sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 8/215 (3%)
Query: 81 KLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCS 140
+L +L++ +++ +L D L++++ + + + P+ I L L + ++SGC
Sbjct: 680 ELRILDMSKTSLPELADTIADVVNLNKLLLRNCSLIEELPS---IEKLTHLEVFDVSGCI 736
Query: 141 QLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLK 200
+LK + + E+ L+ T + ELP I LS L L +R C +LK+LP L KL
Sbjct: 737 KLKNINGSFGEMSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLP-NLEKLT 795
Query: 201 SLKFLILNGCG-ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERL 259
+L+ ++GC + + + L L + L +T ++P + LS L L C +L
Sbjct: 796 NLEIFDVSGCTELETIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKL 855
Query: 260 QSLPKLP--CNLKELDADHCAALESLSDLF-SISY 291
++LP L +L D C L+ + + F S+SY
Sbjct: 856 KALPNLEKLTHLVIFDVSGCTNLDKIEESFESMSY 890
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 122/269 (45%), Gaps = 42/269 (15%)
Query: 55 PVFPE-IRYLFWHGYPLKSLPSITHPAKL-----------VLLEVPHSNIQQLGDGGQHH 102
P+ E I++L+ ++ +P ++ L V L N+Q+L
Sbjct: 927 PLISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKE 986
Query: 103 CKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNG 162
C +++ N L+ L IL+LSGCS L+ P L + N+ + L
Sbjct: 987 CTGLEVLPIDVN-------------LSSLMILDLSGCSSLRTFP---LISTNIVWLYLEN 1030
Query: 163 TAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC-GITQLPENLGQ 221
TAIEE+PS+I L RL+ L +++C L+ LP + L SL L L+GC + P
Sbjct: 1031 TAIEEIPSTIGNLHRLVKLEMKECTGLEVLPTDV-NLSSLMILDLSGCSSLRTFP----- 1084
Query: 222 LFSLEEFC--LRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELD----AD 275
L S C L+ T E++P + +RL + C+RL+++ L L+ D
Sbjct: 1085 LISTRIECLYLQNTAIEEVPCCIEDFTRLTVLMMYCCQRLKTISPNIFRLTRLELADFTD 1144
Query: 276 HCAALESLSDLFSI-SYDYYIRCFELSTN 303
+++LSD + + + ++ C LS N
Sbjct: 1145 CRGVIKALSDATVVATMEDHVSCVPLSEN 1173
|
Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9V780|LAP1_DROME Protein lap1 OS=Drosophila melanogaster GN=Lap1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Query: 85 LEVPHSNIQQLGDGGQHHCKLSQI--ITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQL 142
L V H N L Q L Q+ + RN + P I+S LT L+LS C+ L
Sbjct: 65 LRVLHVNSNNLESIPQAIGSLRQLQHLDLNRNLIVNVPEE--IKSCKHLTHLDLS-CNSL 121
Query: 143 KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSL 202
+RLP I S +++E++LN T +E LP++ L L L LR L +LPK + +L +L
Sbjct: 122 QRLPDAITSLISLQELLLNETYLEFLPANFGRLVNLRILELR-LNNLMTLPKSMVRLINL 180
Query: 203 KFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSF 251
+ L + G T+LPE +G+L SL E + + ++ N+ L L F
Sbjct: 181 QRLDIGGNEFTELPEVVGELKSLRELWIDFNQIRRVSANIGKLRDLQHF 229
|
May have a role in assembling adherens junctions. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | ||||||
| 255537139 | 1137 | leucine-rich repeat-containing protein, | 0.923 | 0.286 | 0.340 | 1e-45 | |
| 224127913 | 467 | predicted protein [Populus trichocarpa] | 0.764 | 0.578 | 0.4 | 1e-40 | |
| 224145028 | 709 | nbs-lrr resistance protein [Populus tric | 0.705 | 0.351 | 0.426 | 2e-40 | |
| 359495221 | 1181 | PREDICTED: TMV resistance protein N-like | 0.804 | 0.240 | 0.368 | 1e-39 | |
| 147822714 | 1254 | hypothetical protein VITISV_015601 [Viti | 0.804 | 0.226 | 0.368 | 1e-39 | |
| 359486073 | 1296 | PREDICTED: TMV resistance protein N-like | 0.807 | 0.219 | 0.358 | 3e-38 | |
| 359486075 | 1291 | PREDICTED: TMV resistance protein N-like | 0.807 | 0.220 | 0.355 | 3e-38 | |
| 225460354 | 1174 | PREDICTED: TMV resistance protein N-like | 0.708 | 0.212 | 0.349 | 6e-38 | |
| 255537137 | 1034 | leucine-rich repeat containing protein, | 0.841 | 0.287 | 0.365 | 3e-37 | |
| 147834354 | 1284 | hypothetical protein VITISV_019700 [Viti | 0.813 | 0.223 | 0.355 | 4e-37 |
| >gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/402 (34%), Positives = 206/402 (51%), Gaps = 76/402 (18%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGE----NKCKVSNIQDPV 56
GTE IEG+CL+ S + +I L S+ F +M LRFLKFY S I+G K ++ D +
Sbjct: 521 GTETIEGMCLNTSMINKIELNSNAFGRMYNLRFLKFYQSYIHGGFKECTKIRLPQGLDSL 580
Query: 57 FPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG--------------GQHH 102
E+RYL WHGYPLKSLP+ H LV+L +P+S +++L G Q
Sbjct: 581 SNELRYLHWHGYPLKSLPARIHLMNLVVLVLPYSKVKRLWKGCKDLKKLKVIDLSYSQAL 640
Query: 103 CKLSQIITAAR-----------------------------NFVTKTPN-PSFIRSLNKLT 132
+++++ TA+ N+ TK + PS I L L
Sbjct: 641 IRITELTTASNLSYMKLSGCKNLRSMPSTTRWKSLSTLEMNYCTKLESLPSSICKLKSLE 700
Query: 133 ILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSL 192
L+L GCS L+ P + S ++ ++LNGTAI+ELPSSIE L L + L +C+ L L
Sbjct: 701 SLSLCGCSNLQSFPEILESMDRLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHL 760
Query: 193 PKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLS----- 246
P+ C LK+L +L L C + +LPE L L +LE+ + K+P+++ HLS
Sbjct: 761 PESFCNLKALYWLFLTFCPKLEKLPEKLSNLTTLEDLSVGVCNLLKLPSHMNHLSCISKL 820
Query: 247 --------RLHSF-------CL--SYCERLQSLPKLPCNLKELDADHCAALESLSDLFSI 289
+L SF CL S C RL+SLP++P +L ++DA C +LE++S L I
Sbjct: 821 DLSGNYFDQLPSFKYLLNLRCLDISSCRRLRSLPEVPHSLTDIDAHDCRSLETISGLKQI 880
Query: 290 -----SYDYYIRCFELSTNYKLDRNELRSILEDALQKIQDMA 326
++ +Y + ++ +K+D + L DA IQ +A
Sbjct: 881 FQLKYTHTFYDKKIIFTSCFKMDESAWSDFLADAQFWIQKVA 922
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127913|ref|XP_002329208.1| predicted protein [Populus trichocarpa] gi|222870989|gb|EEF08120.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 168/295 (56%), Gaps = 25/295 (8%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKV--SNIQDPVFP 58
GTE++EGI D SK++EI L S F +M LR LK YNS + G+N CKV N +
Sbjct: 56 GTEKVEGIFFDTSKIKEIKLSSKAFARMYNLRLLKIYNSEV-GKN-CKVYHPNGLKSLSD 113
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTK 118
E+RYL W GYPLKSLPS HP LV L + HS +++L G Q KL + +++N +K
Sbjct: 114 ELRYLHWDGYPLKSLPSNFHPENLVELNLSHSKVRELWKGDQ---KLHKHFESSKNIKSK 170
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRL 178
L LNLSGCS LK P + ++ + N TAI+ELP SI LSRL
Sbjct: 171 Y-----------LKALNLSGCSNLKMYPE---TTEHVMYLNFNETAIKELPQSIGHLSRL 216
Query: 179 LHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLRKTKFEK 237
+ L LR+CK+L +LP +C LKS+ + ++GC +T+ P G L L T E+
Sbjct: 217 VALNLRECKQLGNLPDSICLLKSIVIVDVSGCSNVTKFPNIPGNTRYLY---LSGTAVEE 273
Query: 238 IPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYD 292
P++V HL R+ S LS C RL++LP L L+ + + S+++ ++S++
Sbjct: 274 FPSSVGHLWRISSLDLSNCGRLKNLPSTIYELAYLEKLNLSGCSSVTEFPNVSWN 328
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145028|ref|XP_002325500.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222862375|gb|EEE99881.1| nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEI 60
GTE++EGI D SK++EI L S F +M LR LK YNS + K + + + E+
Sbjct: 309 GTEKVEGIFFDTSKIKEIKLSSKAFARMYNLRLLKIYNSEVGKNCKVYLPHGLKSLSDEL 368
Query: 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTP 120
RYL W GYPLKSLPS HP LV L + HS +++L G Q SQ AA+ F
Sbjct: 369 RYLHWDGYPLKSLPSNFHPENLVELNLSHSKVRELWKGDQ--VWFSQYTYAAQAFRV--- 423
Query: 121 NPSFIRSLN-KLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLL 179
F SLN K++ LNLSGCS LK P + ++ + N TAI+ELP SI SRL+
Sbjct: 424 ---FQESLNRKISALNLSGCSNLKMYPE---TTEHVMYLNFNETAIKELPQSIGHRSRLV 477
Query: 180 HLGLRDCKRLKSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLRKTKFEKI 238
L LR+CK+L +LP+ +C LKS+ + ++GC +T+ P G L L T E+
Sbjct: 478 ALNLRECKQLGNLPESICLLKSIVIVDVSGCSNVTKFPNIPGNTRYLY---LSGTAVEEF 534
Query: 239 PTNVIHLSRLHSFCLSYCERLQSLP 263
P++V HLSR+ S LS RL++LP
Sbjct: 535 PSSVGHLSRISSLDLSNSGRLKNLP 559
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495221|ref|XP_002274238.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 181/347 (52%), Gaps = 63/347 (18%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFP-- 58
GT+ IEGI LDMS +EIHL +D F KM+KLR L+ Y++ N + + QD FP
Sbjct: 518 GTQAIEGIFLDMSASKEIHLTTDAFKKMKKLRLLRVYHNLKNISDTIHLP--QDFKFPSH 575
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC--KLSQIITAARNFV 116
E+RYL W G+ L+SLPS H KLV L + HS+I++L +H C KL I + +
Sbjct: 576 ELRYLHWDGWTLESLPSNFHGEKLVELSLKHSSIKRLWK--EHKCLGKLKVINLSNSQHL 633
Query: 117 TKTPN----------------------PSF----------------------IRSLNKLT 132
+ PN PS I L L
Sbjct: 634 VECPNLSGAPHVKRLILDGCTSLLEVHPSVAKLKRLTILNMKNCKMLHHFPSITGLESLK 693
Query: 133 ILNLSGCSQLKRLPAEILSAGNME---EMILNGTAIEELPSSIECLSRLLHLGLRDCKRL 189
+LNLSGCS+L + P EI G ME E+ L GTAI ELPSS+ L +L+ L +++CK L
Sbjct: 694 VLNLSGCSKLDKFP-EI--QGYMEYLSELNLEGTAIVELPSSVVFLPQLVSLDMKNCKNL 750
Query: 190 KSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248
K LP +C LKSL+ L+ +GC G+ PE + + SL++ L T +++P +++HL L
Sbjct: 751 KILPSNICSLKSLETLVFSGCSGLEMFPEIMEVMESLQKLLLDGTSIKELPPSIVHLKGL 810
Query: 249 HSFCLSYCERLQSLPKLPCNLKELD---ADHCAALESL-SDLFSISY 291
L C+ L+SLP C+L+ L+ C+ L L +L S+ Y
Sbjct: 811 QLLSLRKCKNLRSLPNSICSLRSLETLIVSGCSNLNKLPEELGSLQY 857
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147822714|emb|CAN68293.1| hypothetical protein VITISV_015601 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 181/347 (52%), Gaps = 63/347 (18%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFP-- 58
GT+ IEGI LDMS +EIHL +D F KM+KLR L+ Y++ N + + QD FP
Sbjct: 531 GTQAIEGIFLDMSASKEIHLTTDAFKKMKKLRLLRVYHNLKNISDTIHLP--QDFKFPSH 588
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC--KLSQIITAARNFV 116
E+RYL W G+ L+SLPS H KLV L + HS+I++L +H C KL I + +
Sbjct: 589 ELRYLHWDGWTLESLPSNFHGEKLVELSLKHSSIKRLWK--EHKCLGKLKVINLSNSQHL 646
Query: 117 TKTPN----------------------PSF----------------------IRSLNKLT 132
+ PN PS I L L
Sbjct: 647 VECPNLSGAPHVKRLILDGCTSLLEVHPSVAKLKRLTILNMKNCKMLHHFPSITGLESLK 706
Query: 133 ILNLSGCSQLKRLPAEILSAGNME---EMILNGTAIEELPSSIECLSRLLHLGLRDCKRL 189
+LNLSGCS+L + P EI G ME E+ L GTAI ELPSS+ L +L+ L +++CK L
Sbjct: 707 VLNLSGCSKLDKFP-EI--QGYMEYLSELNLEGTAIVELPSSVVFLPQLVSLDMKNCKNL 763
Query: 190 KSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248
K LP +C LKSL+ L+ +GC G+ PE + + SL++ L T +++P +++HL L
Sbjct: 764 KILPSNICSLKSLETLVFSGCSGLEMFPEIMEVMESLQKLLLDGTSIKELPPSIVHLKGL 823
Query: 249 HSFCLSYCERLQSLPKLPCNLKELD---ADHCAALESL-SDLFSISY 291
L C+ L+SLP C+L+ L+ C+ L L +L S+ Y
Sbjct: 824 QLLSLRKCKNLRSLPNSICSLRSLETLIVSGCSNLNKLPEELGSLQY 870
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 174/349 (49%), Gaps = 64/349 (18%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGEN--------------K 46
GTE +EG+ L++S ++E+H + FTKM KLR L+FY++ I G + +
Sbjct: 535 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 594
Query: 47 CKVSNIQDPVF--PEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCK 104
CK D F +R L+W GYPLKSLPS HP KL+ L++ S ++QL +G + K
Sbjct: 595 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 654
Query: 105 LSQIITAARNFVTKTPN------------------------------------------P 122
L I + + KTP+
Sbjct: 655 LKFIELSHSQHLIKTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLK 714
Query: 123 SFIRS--LNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLH 180
SF+ S L L IL LSGCS+LK+ P N E+ L GTAI+ LP SIE L+ L
Sbjct: 715 SFLSSIHLESLQILTLSGCSKLKKFPEVQGPMDNFSELSLKGTAIKGLPLSIEYLNGLAL 774
Query: 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGCG-ITQLPENLGQLFSLEEFCLRKTKFEKIP 239
L L +CK L+SLP + KLKSLK LIL+ C + +LPE + SL+E L T ++P
Sbjct: 775 LNLEECKSLESLPSCIFKLKSLKTLILSNCSRLKKLPEIGENMESLKELFLDDTGLRELP 834
Query: 240 TNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDA---DHCAALESLSD 285
+++ HL+ L L C+RL SLP+ C L L C+ L+ L D
Sbjct: 835 SSIEHLNGLVLLKLKNCKRLASLPESFCKLTSLQTLTLSGCSELKKLPD 883
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 175/349 (50%), Gaps = 64/349 (18%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGEN--------------K 46
GTE +EG+ L++S ++E+H + FTKM KLR L+FY++ I G + +
Sbjct: 530 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 589
Query: 47 CKVSNIQDPVF--PEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCK 104
CK D F +R L+W GYPLKSLPS HP KL+ L++ S ++QL +G + K
Sbjct: 590 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 649
Query: 105 LSQIITAARNFVTKTPN------------------------------------------P 122
L I + + K P+
Sbjct: 650 LKFIELSHSQHLIKAPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLK 709
Query: 123 SFIRS--LNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLH 180
SF+ S L L IL LSGCS+LK+LP + N+ E+ L GTAI+ LP SIE L+ L
Sbjct: 710 SFLSSIHLESLQILTLSGCSKLKKLPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGLAL 769
Query: 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLRKTKFEKIP 239
L +CK L+SLP + KLKSLK LIL+ C + +LPE + SL+E L T ++P
Sbjct: 770 FNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRELP 829
Query: 240 TNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDA---DHCAALESLSD 285
+++ HL+ L L C+RL SLP+ C L L C+ L+ L D
Sbjct: 830 SSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPD 878
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 159/303 (52%), Gaps = 53/303 (17%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEI 60
GTE +EG+ LD+S +E+H + FT+M +LR L+FYN +NG K +N+
Sbjct: 534 GTEAVEGLVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNGNLKFLSNNL-------- 585
Query: 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTP 120
R L+WH YPLKSLPS HP KLV L + S ++QL G + KL I + ++T+TP
Sbjct: 586 RSLYWHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTP 645
Query: 121 N------------------------------------------PSFIRS--LNKLTILNL 136
+ SF S +N L IL L
Sbjct: 646 DFSGAPNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSIHMNSLQILTL 705
Query: 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGL 196
SGCS+LK+ P + + ++ +++L+ TA+ ELPSSI L+ L+ L L +CK+L SLP+ L
Sbjct: 706 SGCSKLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSL 765
Query: 197 CKLKSLKFLILNGCG-ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSY 255
CKL SL+ L L GC + +LP+ LG L L + +++P ++ L+ L L+
Sbjct: 766 CKLTSLQILTLAGCSELKKLPDELGSLRCLVNLNADGSGIQEVPPSITLLTNLQVLSLAG 825
Query: 256 CER 258
C++
Sbjct: 826 CKK 828
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537137|ref|XP_002509635.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223549534|gb|EEF51022.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 172/331 (51%), Gaps = 34/331 (10%)
Query: 1 GTEEIEGICLDMSKVEEI-HLYSDTFTKMRKLRFLKFYNSSINGEN----KCKVSNIQDP 55
GTE IE I LDMSK++EI L + F +M L+ L+FY+ + + K ++S D
Sbjct: 538 GTEAIEAIFLDMSKIDEIIDLNPNVFARMSNLKLLRFYDPNFDSRELKDIKVRLSRGLDS 597
Query: 56 VFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNF 115
+ +++YL+W+GYP K+LP+ HP LV L +P S +++L KL +I + +
Sbjct: 598 LSSKLQYLYWNGYPSKTLPANFHPKDLVELHLPSSKLKRLPWKNMDLKKLKEIDLSWSSR 657
Query: 116 VTKTPN---------------------PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGN 154
+T P PS I L+ L LNLS C +L+R P + +
Sbjct: 658 LTTVPELSRATNLTCINLSDSKRIRRFPSTI-GLDSLETLNLSDCVKLERFPD---VSRS 713
Query: 155 MEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC-GIT 213
+ + L GTAIEE+PSS+ CLSRL+ L L DC +LKSLP +CK+KSL+ L L+GC +
Sbjct: 714 IRFLYLYGTAIEEVPSSVGCLSRLVSLNLFDCTKLKSLPTSICKIKSLELLCLSGCTNLK 773
Query: 214 QLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLK--- 270
PE + L E L T +P +V +L RL S LS C L LP+ LK
Sbjct: 774 HFPEISETMDCLVELYLDGTAIADLPLSVENLKRLSSLSLSNCRNLVCLPESISKLKHLS 833
Query: 271 ELDADHCAALESLSDLFSISYDYYIRCFELS 301
LD C LE L + +S + R LS
Sbjct: 834 SLDFSDCPKLEKLPEELIVSLELIARGCHLS 864
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147834354|emb|CAN69843.1| hypothetical protein VITISV_019700 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 168/318 (52%), Gaps = 31/318 (9%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSS--IN--GENKCKVSNIQDPV 56
GTE IEGI LDMS+ EI ++ F +M +LR K Y S +N G+ K +D
Sbjct: 537 GTEAIEGIFLDMSRSREISFTTEAFRRMERLRLFKVYWSHGFVNYMGKEYQKFLLPEDFE 596
Query: 57 FP--EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARN 114
P ++RYL W GY LKSLPS H L+ L + HSNI+QL G ++ +L + +
Sbjct: 597 IPSHDLRYLHWEGYSLKSLPSNFHGENLIELNLKHSNIEQLWQGKKYLEELKMLTLSESQ 656
Query: 115 FVTKTPN---------------------PSFIRSLNKLTILNLSGCSQLKRLPAEILSAG 153
+ + P+ S I L KLT+LNL GC ++ LP+ I
Sbjct: 657 LLNEIPHFSNMPNLEQLNIELCEKLDKVDSSIGILKKLTLLNLRGCQKISSLPSTIQYLV 716
Query: 154 NMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC-GI 212
+++ + L+ AI+ELPSSI L++L L +R C+ L+SLP +C+LKSL+ L L GC +
Sbjct: 717 SLKRLYLHSIAIDELPSSIHHLTQLQTLSIRGCENLRSLPSSICRLKSLEELDLYGCSNL 776
Query: 213 TQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLK-- 270
PE + + L E L T + +P+++ +L+ L L C+ L+SLP LK
Sbjct: 777 XTFPEIMENMEWLTELNLSGTHVKGLPSSIEYLNHLTRLELRCCKNLRSLPSSIWRLKSL 836
Query: 271 -ELDADHCAALESLSDLF 287
ELD C+ LE+ ++
Sbjct: 837 EELDLFGCSNLETFPEIM 854
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | ||||||
| TAIR|locus:2153363 | 1261 | AT5G45200 [Arabidopsis thalian | 0.730 | 0.204 | 0.362 | 1.2e-28 | |
| TAIR|locus:2175075 | 1068 | AT5G41750 [Arabidopsis thalian | 0.875 | 0.289 | 0.287 | 1.9e-28 | |
| TAIR|locus:2160472 | 1038 | AT5G41540 [Arabidopsis thalian | 0.866 | 0.294 | 0.300 | 1.3e-27 | |
| TAIR|locus:2175070 | 1114 | AT5G41740 [Arabidopsis thalian | 0.869 | 0.275 | 0.303 | 1.3e-26 | |
| TAIR|locus:2155189 | 980 | AT5G49140 [Arabidopsis thalian | 0.793 | 0.285 | 0.299 | 1.7e-26 | |
| TAIR|locus:2136108 | 1095 | AT4G11170 [Arabidopsis thalian | 0.779 | 0.251 | 0.317 | 7.2e-26 | |
| TAIR|locus:2158475 | 1217 | RPS4 "RESISTANT TO P. SYRINGAE | 0.784 | 0.227 | 0.334 | 1.8e-25 | |
| TAIR|locus:2026624 | 1131 | AT1G63750 [Arabidopsis thalian | 0.813 | 0.253 | 0.296 | 4.2e-25 | |
| TAIR|locus:2164486 | 1104 | AT5G40910 [Arabidopsis thalian | 0.858 | 0.274 | 0.300 | 6.7e-25 | |
| TAIR|locus:2076043 | 1194 | RPP1 "recognition of peronospo | 0.770 | 0.227 | 0.287 | 5.4e-24 |
| TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 101/279 (36%), Positives = 148/279 (53%)
Query: 4 EIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDP----VFP- 58
++ G+ LDM +V+E+ L SDTF KM LR+LKFYNS + E + + S + P P
Sbjct: 558 KVRGVYLDMFEVKEMGLDSDTFNKMDDLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQ 617
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTK 118
E+RYL W YP K+LP P L+ L++P+S I+Q+ + + L + N +K
Sbjct: 618 ELRYLNWLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWLDL---NHSSK 674
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE-MILN--G-TAIEELPSSIEC 174
+ S + KL +NL GC+ LK LP ++L NME M LN G T++E LP
Sbjct: 675 LHSLSGLSRAQKLQSINLEGCTGLKTLP-QVLQ--NMESLMFLNLRGCTSLESLPDIT-- 729
Query: 175 LSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTK 234
L L L L +C R K K + K +L+ L L+G I +LP +G L L L+ K
Sbjct: 730 LVGLRTLILSNCSRFKEF-KLIAK--NLEELYLDGTAIKELPSTIGDLQKLISLKLKDCK 786
Query: 235 -FEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKEL 272
+P ++ +L + LS C L+S P++ NLK L
Sbjct: 787 NLLSLPDSIGNLKAIQEIILSGCSSLESFPEVNQNLKHL 825
|
|
| TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 98/341 (28%), Positives = 167/341 (48%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEI 60
GTE ++GI D S +EE+ + F MR L+FL+ Y S N E ++ + + P +
Sbjct: 525 GTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIPEDMEYI-PPV 583
Query: 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTP 120
R L W YP KSLP +P LV + +P S +++L G Q L I + + + P
Sbjct: 584 RLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSLKEIP 643
Query: 121 NPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM-ILNGTAIEELPSSIECLSRLL 179
N S ++ N L IL+L C L LP IL+ +E + + N + ++ +P++I L+ L
Sbjct: 644 NLS--KATN-LEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNIN-LASLE 699
Query: 180 HLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLG------QLF----SLEEF- 228
L + C L++ P +K L L I +P ++G L+ SL+
Sbjct: 700 RLDMTGCSELRTFPDISSNIKKLN---LGDTMIEDVPPSVGCWSRLDHLYIGSRSLKRLH 756
Query: 229 ---CLR-----KTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAAL 280
C+ K+ E IP ++I L+RL ++ C +L+S+ LP +L++LDA+ C +L
Sbjct: 757 VPPCITSLVLWKSNIESIPESIIGLTRLDWLNVNSCRKLKSILGLPSSLQDLDANDCVSL 816
Query: 281 ESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDALQK 321
+ + S+ IR + LD + I++ ++ +
Sbjct: 817 KRVC----FSFHNPIRALSFNNCLNLDEEARKGIIQQSVYR 853
|
|
| TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 103/343 (30%), Positives = 165/343 (48%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-PE 59
GT + GI DMSKV E + F MR LRFL+ Y S K + ++D + P
Sbjct: 525 GTGSVLGISFDMSKVSEFSISGRAFEAMRNLRFLRIYRRS--SSKKVTLRIVEDMKYLPR 582
Query: 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKT 119
+R L W YP KSLP P +LV+L +PHSN+++L G Q L I + + +
Sbjct: 583 LRLLHWEHYPRKSLPRRFQPERLVVLHMPHSNLEKLWGGIQSLTNLKNIDLSFSRKLKEI 642
Query: 120 PNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA-IEELPSSIECLSRL 178
PN S +L LT++ CS L LP+ I + ++ +++ G ++ +P++I +S L
Sbjct: 643 PNLSNATNLETLTLIK---CSSLVELPSSISNLQKLKALMMFGCKMLKVVPTNINLVS-L 698
Query: 179 LHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFS-LEEFCL--RKTK- 234
+ + C +L S P +KSL + I ++P ++ + +S L++ L R K
Sbjct: 699 EKVSMTLCSQLSSFPDISRNIKSLD---VGKTKIEEVPPSVVKYWSRLDQLSLECRSLKR 755
Query: 235 -----------------FEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHC 277
E IP VI L+RL + + C +L SLP LP +L+ L A+HC
Sbjct: 756 LTYVPPSITMLSLSFSDIETIPDCVIRLTRLRTLTIKCCRKLVSLPGLPPSLEFLCANHC 815
Query: 278 AALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDALQ 320
+LE + S+ ++ KLD R+I + ++
Sbjct: 816 RSLERVH-----SFHNPVKLLIFHNCLKLDEKARRAIKQQRVE 853
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| TAIR|locus:2175070 AT5G41740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 104/343 (30%), Positives = 166/343 (48%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEI 60
GT + GI D S + E+ + D F MR LRFL+ Y + GE ++ D + P +
Sbjct: 512 GTGSVIGISFDTSNIGEVSVSKDAFEGMRNLRFLRIYRL-LGGEVTLQIPEDMDYI-PRL 569
Query: 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKT- 119
R L+W YP KSLP P +LV L +P SN++ L GG +II R++ K
Sbjct: 570 RLLYWDRYPRKSLPRRFKPERLVELHMPRSNLELLW-GGIEPLPNLKIINLNRSYRLKEI 628
Query: 120 PNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA-IEELPSSIECLSRL 178
PN S +L +LT L C L LP+ I + +E + + + ++ +P++I L+ L
Sbjct: 629 PNLSKATNLERLT---LESCLSLVELPSSISNLHKLEILDVKFCSMLQVIPTNIN-LASL 684
Query: 179 LHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLG------QLF----SLEEF 228
L + C RL++ P +K+L I I +P ++G QL SL+
Sbjct: 685 ERLDVSGCSRLRTFPDISSNIKTL---IFGNIKIEDVPPSVGCWSRLDQLHISSRSLKRL 741
Query: 229 -----C-----LRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCA 278
C LR + E+I VI L+RLH + C +L+S+ LP +LK LDA+ C
Sbjct: 742 MHVPPCITLLSLRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCV 801
Query: 279 ALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDALQK 321
+L+ + S+ + + + KLD R I++ ++ +
Sbjct: 802 SLKRVR----FSFHNPMHTLDFNNCLKLDEEAKRGIIQRSVSR 840
|
|
| TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 93/311 (29%), Positives = 151/311 (48%)
Query: 1 GTEEIEGICLDMSKVE-EIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-P 58
G+E + GI LD S+++ ++ + F MR L+FL+FYN I+ K+ + + P
Sbjct: 527 GSEAVLGISLDTSEIQNDVFMSERVFEDMRNLKFLRFYNKKIDENPSLKLHLPRGLNYLP 586
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTK 118
+R L W YP+K +PS P LV L + HS + +L +G Q L I + N + +
Sbjct: 587 AVRLLHWDSYPMKYIPSQFRPECLVELRMMHSKVVKLWEGTQTLAYLKTIDLSFSNNLVE 646
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA-IEELPSSIECLSR 177
P+ S SL L L GC L LP+ +L+ ++ + L +E +P I L+
Sbjct: 647 VPDLSKAISLETLC---LEGCQSLAELPSSVLNLHRLKWLRLTMCEKLEVIPLHIN-LAS 702
Query: 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEF----CLRKT 233
L L + C +LKS P K+++ + + GI ++P ++ Q LE CL
Sbjct: 703 LEVLDMEGCLKLKSFPD---ISKNIERIFMKNTGIEEIPPSISQWSRLESLDISGCLNLK 759
Query: 234 KFEKIPTNVIH-----------------LSRLHSFCLSYCERLQSLPKLPCNLKELDADH 276
F +P +V++ L+ LH + C +L SLP+LP ++K L A +
Sbjct: 760 IFSHVPKSVVYIYLTDSGIERLPDCIKDLTWLHYLYVDNCRKLVSLPELPSSIKILSAIN 819
Query: 277 CAALESLSDLF 287
C +LE +S F
Sbjct: 820 CESLERISSSF 830
|
|
| TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 7.2e-26, P = 7.2e-26
Identities = 101/318 (31%), Positives = 162/318 (50%)
Query: 1 GTEEIEGICLDMSKV-EEIHLYSDTFTKMRKLRFLKFYNSS-INGENKCKVSNIQDPV-- 56
GT + GI LDM ++ EE+++ TF +MR L +LKFY SS I+ + K K+ ++ +
Sbjct: 525 GTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSY 584
Query: 57 FPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQI-ITAARNF 115
P++R L W YPL+ PS P LV L + HS +++L G Q L + + ++RN
Sbjct: 585 LPQLRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNL 644
Query: 116 VTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA----IEELPSS 171
PN + KL L+L C L LP+ I N++ +IL + +E +P++
Sbjct: 645 EI-LPN---LMEATKLNRLDLGWCESLVELPSSIK---NLQHLILLEMSCCKKLEIIPTN 697
Query: 172 IECLS-RLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN------LGQL-- 222
I S +LH R C RL++ P+ ++ L + G IT++P + + ++
Sbjct: 698 INLPSLEVLHF--RYCTRLQTFPEISTNIRLLNLI---GTAITEVPPSVKYWSKIDEICM 752
Query: 223 ------------FSLEEFCLRKTK-FEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNL 269
+ LE+ CLR+ K E IP + +L RL +SYC + SLPKLP ++
Sbjct: 753 ERAKVKRLVHVPYVLEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSV 812
Query: 270 KELDADHCAALESLSDLF 287
L A +C +L+ L F
Sbjct: 813 SALTAVNCESLQILHGHF 830
|
|
| TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 99/296 (33%), Positives = 149/296 (50%)
Query: 5 IEGICLDMSKVE-EIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSN---IQDPV-FP- 58
+ GI LD+S+VE E L D F M LR+LKFYNS E CK +N I D + P
Sbjct: 557 VRGIFLDLSEVEDETSLDRDHFINMGNLRYLKFYNSHCPQE--CKTNNKINIPDKLKLPL 614
Query: 59 -EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVT 117
E+R L W +PL++LP+ +P LV L++P+S ++QL +G + L + N +
Sbjct: 615 KEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDL---NHSS 671
Query: 118 KTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNG-TAIEELPSSIECLS 176
K + S + KL LNL GC+ LK P ++ + + L G T++E LP + +S
Sbjct: 672 KLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPE-MNLIS 730
Query: 177 RLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKF- 235
L L L C K P L +++ L L+G I+QLP N+ +L L ++ K
Sbjct: 731 -LKTLTLSGCSTFKEFP--LIS-DNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKML 786
Query: 236 EKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISY 291
E+IP V L L LS C L+ P++ + + A+E + L S+ Y
Sbjct: 787 EEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQY 842
|
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| TAIR|locus:2026624 AT1G63750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 4.2e-25, P = 4.2e-25
Identities = 98/331 (29%), Positives = 160/331 (48%)
Query: 1 GTE-EIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKV-SNIQDPVFP 58
GT + GI D S + E+ + F ++ LRFL Y S +G N+ + ++ P P
Sbjct: 528 GTSCNVSGISFDTSGISEVTICDGAFKRLHDLRFLHVYKSRDDGNNRVHIPEKVEFP--P 585
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQI-ITAARNF-- 115
+R L W YP KSLP + LV L + S +++L +G QH L + +T ++N
Sbjct: 586 RLRLLHWAAYPSKSLPPTFNLECLVELNMRESLVEKLWEGTQHLKNLKYMDLTESKNLKE 645
Query: 116 ---VTKTPN---------------PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157
++ N PS L+KL L ++ C L+ +PA ++ ++++
Sbjct: 646 LPDLSNATNLEYFYLDNCESLVEIPSSFAHLHKLEWLEMNNCINLQVIPAH-MNLTSVKQ 704
Query: 158 MILNGTA-IEELPSSIECLSRLLH-LGLRDCKRLKSLPKGLCKLKSLKFLILNGC----G 211
+ + G + + + P +SR + L + D L+ +P + L +L ++ G
Sbjct: 705 VNMKGCSRLRKFP----VISRHIEALDISDNTELEDMPASIASWCHLVYLDMSHNEKLQG 760
Query: 212 ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKE 271
+TQLP SL L T E IP + L +L CLS C RL SLP LPC++K
Sbjct: 761 LTQLPT------SLRHLNLSYTDIESIPDCIKALHQLEELCLSGCTRLASLPDLPCSIKA 814
Query: 272 LDADHCAALESLSD-LFSISYDY-YIRCFEL 300
L+A+ C +LES+S L++ S + CF+L
Sbjct: 815 LEAEDCESLESVSSPLYTPSARLSFTNCFKL 845
|
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| TAIR|locus:2164486 AT5G40910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 6.7e-25, P = 6.7e-25
Identities = 103/343 (30%), Positives = 164/343 (47%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-PE 59
GTE + GI D+SK+E + + F +MR L+FL FYN S VS ++D + P
Sbjct: 514 GTESVIGISFDISKIETLSISKRAFNRMRNLKFLNFYNGS--------VSLLEDMEYLPR 565
Query: 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKT 119
+R L+W YP KSLP P LV L + S +++L G Q L +I + + +
Sbjct: 566 LRLLYWGSYPRKSLPLTFKPECLVELYMGFSKLEKLWGGIQPLTNLKKINLGYSSNLKEI 625
Query: 120 PNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA-IEELPSSIECLSRL 178
PN S +L LT L+GC L +P+ I + +E + +G ++ +P++I L+ L
Sbjct: 626 PNLSKATNLKTLT---LTGCESLVEIPSSIWNLQKLEMLYASGCIKLQVIPTNIN-LASL 681
Query: 179 LHLGLRDCKRLKSLPKGLCKLKSL--------KF---LILNGCGITQLP---ENLGQLFS 224
+ + +C RL+S P +K L +F ++ + C + L +L +L
Sbjct: 682 EEVNMSNCSRLRSFPDISSNIKRLYVAGTMIKEFPASIVGHWCRLDFLQIGSRSLKRLTH 741
Query: 225 LEEFC----LRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAAL 280
+ E LR + + IP VI L L S + C +L S+ +L L ADHC +L
Sbjct: 742 VPESVTHLDLRNSDIKMIPDCVIGLPHLVSLLVENCTKLVSIQGHSPSLVTLFADHCISL 801
Query: 281 ESLSDLFS--ISYDYYIRCFELSTNYKLDRNELRSILEDALQK 321
+S+ F IS + C KLD+ R I++ + K
Sbjct: 802 KSVCCSFHGPISKLMFYNCL------KLDKESKRGIIQQSGNK 838
|
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| TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 5.4e-24, P = 5.4e-24
Identities = 83/289 (28%), Positives = 158/289 (54%)
Query: 7 GICLDMSKVEE-IHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF--PEIRYL 63
GI L++S EE +++ ++ F++ ++S E + +++ +QD ++ P+IR L
Sbjct: 618 GIHLELSNTEEELNISEKVLERVHDFHFVRI-DASFQPE-RLQLA-LQDLIYHSPKIRSL 674
Query: 64 FWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPS 123
W+GY LPS +P LV L++ SN+++L +G + L + + +++ + PN S
Sbjct: 675 NWYGYESLCLPSTFNPEFLVELDMRSSNLRKLWEGTKQLRNLKWMDLSYSSYLKELPNLS 734
Query: 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMIL-NGTAIEELPSSIECLSRLLHLG 182
+L +L + N CS L LP+ I +++ + L N +++E+LP+ IE ++L L
Sbjct: 735 TATNLEELKLRN---CSSLVELPSSIEKLTSLQILDLENCSSLEKLPA-IENATKLRELK 790
Query: 183 LRDCKRLKSLPKGLCKLKSLKFLILNGCG-ITQLPENLGQLFSLEEFCLRK-TKFEKIPT 240
L++C L LP + +LK L ++GC + +LP ++G + LE F L + +P+
Sbjct: 791 LQNCSSLIELPLSIGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPS 850
Query: 241 NVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDA---DHCAALESLSDL 286
++ +L L + C +L++LP + NLK LD C+ L+S ++
Sbjct: 851 SIGNLQNLCKLIMRGCSKLEALP-ININLKSLDTLNLTDCSQLKSFPEI 898
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.01250001 | hypothetical protein (467 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.02220007 | annotation not avaliable (671 aa) | • | 0.460 | |||||||
 | eugene3.00190764 | hypothetical protein (586 aa) | • | 0.460 | |||||||
 | eugene3.27720001 | hypothetical protein (224 aa) | • | 0.455 | |||||||
 | eugene3.03590002 | hypothetical protein (228 aa) | • | 0.455 | |||||||
 | fgenesh4_pg.C_LG_VI000128 | hypothetical protein (228 aa) | • | 0.454 | |||||||
 | eugene3.02620001 | hypothetical protein (209 aa) | • | 0.451 | |||||||
 | gw1.VI.2172.1 | hypothetical protein (315 aa) | • | 0.437 | |||||||
 | eugene3.02170002 | hypothetical protein (188 aa) | • | 0.414 | |||||||
 | eugene3.00150435 | hypothetical protein (198 aa) | • | 0.411 | |||||||
 | fgenesh4_pg.C_LG_III000118 | hypothetical protein (297 aa) | • | 0.410 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 353 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 8e-29 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 8e-10 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-04 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 8e-29
Identities = 91/297 (30%), Positives = 148/297 (49%), Gaps = 22/297 (7%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCK--VSNIQDPVFP 58
GT+++ GI LD+ +++E+H++ + F MR L FLKFY + + + + + D + P
Sbjct: 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP 589
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTK 118
++R L W YPL+ +PS P LV L++ S +++L DG L I + +
Sbjct: 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA-IEELPSSIECLSR 177
P+ S +L L LS CS L LP+ I +E++ ++ +E LP+ I L
Sbjct: 650 IPDLSMATNLET---LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-LKS 705
Query: 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEK 237
L L L C RLKS P ++ +L L+ I + P NL +L +L+E L + K EK
Sbjct: 706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK 761
Query: 238 IPTNVIHLSRL-----HSFCLSYCERLQSLPKLPC------NLKELDADHCAALESL 283
+ V L+ L S + + SL +LP L+ L+ ++C LE+L
Sbjct: 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818
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syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 8e-10
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 84 LLEVPHSNIQQLGDGGQHHCKLSQI-ITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQL 142
L+E+P S+IQ L KL + I N T P+ I +L L L+LSGCS+L
Sbjct: 791 LVELP-SSIQNLH-------KLEHLEIENCINLETL---PTGI-NLESLESLDLSGCSRL 838
Query: 143 KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSL 202
+ P +I + N+ ++ L+ T IEE+P IE S L L + C L+ + + KLK L
Sbjct: 839 RTFP-DI--STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895
Query: 203 KFLILNGCG 211
+ + + CG
Sbjct: 896 ETVDFSDCG 904
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syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 15/189 (7%)
Query: 103 CKLSQIITAARNFVTKT-----PNPSFIRSLNKLTILN--------LSGCSQLKRLPAEI 149
S + + +++ +PS I SL+ L ++L+ +E+
Sbjct: 53 NLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISEL 112
Query: 150 LSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG 209
L N+ + L+ I ++P I L L +++SLP L L +LK L L+
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172
Query: 210 CGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLP--C 267
++ LP+ L L +L L K +P + LS L LS ++ L L
Sbjct: 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK 232
Query: 268 NLKELDADH 276
NL L+ +
Sbjct: 233 NLSGLELSN 241
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLR 184
+R+L L L+LS L LP + + N+ + L+G I +LP IE LS L L L
Sbjct: 159 LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217
Query: 185 DCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIP 239
+ + L L LK+L L L+ + LPE++G L +LE L + I
Sbjct: 218 N-NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.95 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.94 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.91 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.87 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.87 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.85 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.82 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.81 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.75 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.73 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.67 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.66 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.66 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.65 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.65 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.62 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.62 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.5 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.46 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.45 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.26 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.24 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.15 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.13 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.1 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.1 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.1 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.07 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.03 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.02 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.96 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.93 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.89 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.79 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.75 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.73 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.72 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.7 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.65 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.65 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.55 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.49 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.49 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.41 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.39 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.36 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.32 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.21 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.2 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.13 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.92 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.83 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.8 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.8 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.72 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.68 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.6 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.6 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.42 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.31 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.91 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.81 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.55 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.47 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.36 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.91 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.55 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.98 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.56 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.0 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 92.86 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.08 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.08 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 86.74 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 84.82 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 84.81 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 80.13 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=238.44 Aligned_cols=209 Identities=31% Similarity=0.543 Sum_probs=170.0
Q ss_pred CCCceEEEEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc--cceEeecccCCCCCCCCCC
Q 043910 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE--IRYLFWHGYPLKSLPSITH 78 (353)
Q Consensus 1 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~l~~~~~ 78 (353)
|+..+++|.+|++..+...+..++|.+|++|+.|.+..+............+..+..++ |+.|+|.+++++.+|..+.
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~ 609 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR 609 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence 67889999999999999999999999999999999987653322222244566666655 9999999999999999889
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+++|+.|+++++.++.++.+...+++|+.+++++++.++.++ .++.+++|++|++++|.....+|..+..+++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 999999999999999999988999999999999998776554 47788999999999999999999999999999999
Q ss_pred EccCc-cCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccC
Q 043910 159 ILNGT-AIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 159 ~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
++++| .++.+|..+ .+++|++|++++|..+..+|.. ..+|+.|++++|.+..+|
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP 741 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence 99997 566888755 6889999999988776665532 234455555555444333
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=230.01 Aligned_cols=289 Identities=19% Similarity=0.233 Sum_probs=207.3
Q ss_pred EEEEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceE
Q 043910 6 EGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVL 84 (353)
Q Consensus 6 ~~i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~ 84 (353)
+...+|++++......+..|..+++|+.|++++|.+.+..+... +..+. |++|++++|.+....+...+++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~-----~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-----FTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHH-----hccCCCCCEEECcCCccccccCccccCCCCE
Confidence 34556666665555557788999999999999999876554221 21233 8999999988764333456788999
Q ss_pred EEccCCCccc-cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc
Q 043910 85 LEVPHSNIQQ-LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT 163 (353)
Q Consensus 85 L~L~~~~i~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 163 (353)
|++++|.+.. ++..+..+++|+.|++++|...... +..+..+++|++|++++|...+.+|..+..+++|++|++++|
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 9999888864 5666777888999999887543222 346778888888888888777778888888888888888888
Q ss_pred cCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-ccch
Q 043910 164 AIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPT 240 (353)
Q Consensus 164 ~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~ 240 (353)
.++ .+|..+..+++|++|++++|...+.+|..++++++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|.
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 877 67777888888888888887666667777788888888888888776 56666777778888888888776 6666
Q ss_pred hHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCC
Q 043910 241 NVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 241 ~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
.+.++++|+.|++++|...+.+|. .+++|+.|++++|.--..++.... ..++|+.+++++|
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L~Ls~n 366 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--KHNNLTVLDLSTN 366 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh--CCCCCcEEECCCC
Confidence 777777888888877665555554 245677777777654434443221 2345556666555
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-24 Score=217.05 Aligned_cols=228 Identities=18% Similarity=0.228 Sum_probs=111.1
Q ss_pred CHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCC-CCC-CCCCCCCceEEEccCCCccc-cC
Q 043910 21 YSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK-SLP-SITHPAKLVLLEVPHSNIQQ-LG 96 (353)
Q Consensus 21 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~-~l~-~~~~~~~L~~L~L~~~~i~~-l~ 96 (353)
.+..+..+++|++|++++|.+.+..+ ..+..+. |++|++++|.+. .+| .+..+++|+.|++++|.+.+ ++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIP------NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCC------hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 34445556666666666655544322 1222222 555555555543 233 23345555555555555542 34
Q ss_pred CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc-ccCccccCC
Q 043910 97 DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE-ELPSSIECL 175 (353)
Q Consensus 97 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l 175 (353)
..+..+++|+.|++++|...... +..++.+++|++|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred hhHhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 44445555555555555321111 224455555555555555444445555555555555555555554 344444555
Q ss_pred CCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecc
Q 043910 176 SRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCL 253 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l 253 (353)
++|++|++++|.....+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 55555555554444444444455555555555555544 34444444555555555555443 33333333333444444
Q ss_pred ccc
Q 043910 254 SYC 256 (353)
Q Consensus 254 ~~~ 256 (353)
++|
T Consensus 388 ~~n 390 (968)
T PLN00113 388 FSN 390 (968)
T ss_pred cCC
Confidence 333
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-25 Score=197.71 Aligned_cols=301 Identities=19% Similarity=0.141 Sum_probs=178.2
Q ss_pred EEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC--CCCCCCCceEE
Q 043910 8 ICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP--SITHPAKLVLL 85 (353)
Q Consensus 8 i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L 85 (353)
-.+++..+.+.++..++++.++.|+.||++.|.++... .+..-...++++|+|++|.++.+. .+..+.+|..|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~-----~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP-----KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc-----CCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 45567777788888999999999999999999886522 122212244999999999998776 34467799999
Q ss_pred EccCCCccccCCCCcC-CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc
Q 043910 86 EVPHSNIQQLGDGGQH-HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA 164 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 164 (353)
.|+.|+++.++...+. +++|+.|++..|. +.... .-.|..+++|+.|.+..|+...--...|..+.++++|+++.|+
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccc-eeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 9999999998876555 8999999988763 22111 2245566666666666644433333345555666666666665
Q ss_pred CcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-cc-----------------------
Q 043910 165 IEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NL----------------------- 219 (353)
Q Consensus 165 i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~----------------------- 219 (353)
+..+.. ++.++++|+.|++++|...+.-+++|..+++|+.|++++|+++.+++ .+
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 554322 34455555555555533322233455555555555555555554443 23
Q ss_pred -CCCCCCcEEEeeCCCCc-ccc---hhHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCcccccc
Q 043910 220 -GQLFSLEEFCLRKTKFE-KIP---TNVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSIS 290 (353)
Q Consensus 220 -~~l~~L~~L~l~~~~l~-~l~---~~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~ 290 (353)
..+++|++||+++|.+. .+. ..+.++++|++|++.| +.++.++. .+.+|++|++.++ .+.++-...+-+
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~ 438 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEP 438 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC-cceeeccccccc
Confidence 33445555555555543 121 1233455555555555 33445442 3456666666664 244443333332
Q ss_pred ccccccEEEecCCccCchHHHHhHHHHHH
Q 043910 291 YDYYIRCFELSTNYKLDRNELRSILEDAL 319 (353)
Q Consensus 291 ~~~~l~~l~~~~c~~l~~~~~~~~~~~~~ 319 (353)
. .|+.|.+....-|++.....+..|..
T Consensus 439 m--~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 439 M--ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred c--hhhhhhhcccceEEeccHHHHHHHHH
Confidence 2 46666666666666666666666654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-21 Score=196.85 Aligned_cols=266 Identities=29% Similarity=0.392 Sum_probs=156.2
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccC-CCCCCCCCCCCCceEEEccCCC-ccccCCCCcCCCC
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYP-LKSLPSITHPAKLVLLEVPHSN-IQQLGDGGQHHCK 104 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-~~~l~~~~~~~~L~~L~L~~~~-i~~l~~~~~~~~~ 104 (353)
.++|++|++.+|.+.. .+..+..+. |++++++++. ++.+|....+++|+.|++++|. +..++..+..+++
T Consensus 610 ~~~L~~L~L~~s~l~~-------L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-------LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred ccCCcEEECcCccccc-------cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCC
Confidence 3556666666655421 223333333 7777777654 5666766677777777777653 5556666677777
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc------------------
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE------------------ 166 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~------------------ 166 (353)
|+.|++++|+.++.++. ...+++|++|++++|..+..+|.. ..+|++|++++|.++
T Consensus 683 L~~L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 683 LEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred CCEEeCCCCCCcCccCC---cCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccc
Confidence 88888887776665532 125667777777776555444421 223444444444333
Q ss_pred ------------------------------------ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCc
Q 043910 167 ------------------------------------ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC 210 (353)
Q Consensus 167 ------------------------------------~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 210 (353)
.+|..++.+++|+.|++++|..++.+|..+ .+++|+.|++++|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 344444455555555555555455454432 4455555555554
Q ss_pred c-CCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCcc
Q 043910 211 G-ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDL 286 (353)
Q Consensus 211 ~-i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~ 286 (353)
. +..+|.. ..+|+.|++++|.+..+|..+..+++|+.|++++|+.++.+|.. ++.|+.+++++|..++.++..
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 2 2233321 24667777777777777877888888888888888888877753 356777788888888766542
Q ss_pred ccc-----------cccccccEEEecCCccCchHH
Q 043910 287 FSI-----------SYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 287 ~~~-----------~~~~~l~~l~~~~c~~l~~~~ 310 (353)
... ...+....+.+.+|.++...+
T Consensus 913 ~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 913 GSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred CCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 110 001122345677887776544
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-24 Score=197.70 Aligned_cols=275 Identities=18% Similarity=0.293 Sum_probs=162.2
Q ss_pred cccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEEccCCCccc
Q 043910 18 IHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQ 94 (353)
Q Consensus 18 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~ 94 (353)
..++++.| .++.|+.||++.|++. ..|..+.+-. +-.|+|++|+++.+|. +.++..|-.|||++|++..
T Consensus 93 sGiP~diF-~l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 93 SGIPTDIF-RLKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred CCCCchhc-ccccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence 33444433 5677777777777763 2344444444 6677777777777772 3367777777777777777
Q ss_pred cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC-CcccchhhhcCCCccEEEccCccCcccCcccc
Q 043910 95 LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ-LKRLPAEILSAGNMEEMILNGTAIEELPSSIE 173 (353)
Q Consensus 95 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~ 173 (353)
+|+.+..+.+|+.|+++++.... .. ...+-.+.+|++|.+++.+. ...+|.++..+.+|+.++++.|.+..+|..+.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~h-fQ-LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly 242 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNH-FQ-LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY 242 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhH-HH-HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh
Confidence 77777777777777777764211 10 11222345555666665432 23456666666666666666666666666666
Q ss_pred CCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc--ccchhHhhccCCcee
Q 043910 174 CLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE--KIPTNVIHLSRLHSF 251 (353)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L 251 (353)
++++|+.|++++ +.++.+....+...+|++|++++|+++.+|..+..++.|+.|.+.+|+++ .+|+.++.+.+|..+
T Consensus 243 ~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 666666666666 34555554455556666666666666666666666666666666666544 556666666666655
Q ss_pred ccccccccccCCCC---CCCcceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 252 CLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 252 ~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
..++ +.++-+|+. |..|+.|.++.+ .+-.+|..... ++.++.|++.+.+.|-
T Consensus 322 ~aan-N~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHl--L~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 322 HAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHL--LPDLKVLDLRENPNLV 376 (1255)
T ss_pred Hhhc-cccccCchhhhhhHHHHHhccccc-ceeechhhhhh--cCCcceeeccCCcCcc
Confidence 5544 445555553 345666666543 34445554443 4556666666666653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-22 Score=179.66 Aligned_cols=283 Identities=19% Similarity=0.184 Sum_probs=186.1
Q ss_pred EEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceE
Q 043910 8 ICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVL 84 (353)
Q Consensus 8 i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~ 84 (353)
-.+|+++++.-++....|.++++|+++.+..|.++. .|....... ++.|+|.+|.+..+. +...++.|+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-------IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-------IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhh-------cccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 357889998888999999999999999999988742 222222223 888888888887776 3446778888
Q ss_pred EEccCCCccccCCCCcC-CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc
Q 043910 85 LEVPHSNIQQLGDGGQH-HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT 163 (353)
Q Consensus 85 L~L~~~~i~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 163 (353)
|||+.|.|+.++...+. -.++++|+++.|. +|.+. ...|..+.+|..|.|+.|....--+..|..+++|+.|++..|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccc-ccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 88888888887754443 4788888888764 33333 346667777777777775433333344555777777777776
Q ss_pred cCccc-Ccc------------------------ccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCcc-C
Q 043910 164 AIEEL-PSS------------------------IECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQL-P 216 (353)
Q Consensus 164 ~i~~l-~~~------------------------~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~-~ 216 (353)
.|.-+ ... |..+.++++|++..|+ +..+. .++..+++|+.|++++|.|..+ +
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeec
Confidence 55522 112 3445555556665533 33332 3455667777777777766643 4
Q ss_pred cccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecCCCc---CccccCcccc
Q 043910 217 ENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCA---ALESLSDLFS 288 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~---~l~~~~~~~~ 288 (353)
..+..+++|++|++++|+++.++. .+..+++|+.|.+++| .++.+.+ .+.+|++||+.++. -+++....+.
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 456677778888888888776655 5667777888888774 3444433 45788888887642 2444333332
Q ss_pred ccccccccEEEecCC
Q 043910 289 ISYDYYIRCFELSTN 303 (353)
Q Consensus 289 ~~~~~~l~~l~~~~c 303 (353)
+++.|++|.+.+.
T Consensus 390 --gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 390 --GLPSLRKLRLTGN 402 (873)
T ss_pred --cchhhhheeecCc
Confidence 3788999999887
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-22 Score=183.98 Aligned_cols=272 Identities=21% Similarity=0.324 Sum_probs=190.6
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCC--CCC-CCCCCCCceEEEccCCCccccCC
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK--SLP-SITHPAKLVLLEVPHSNIQQLGD 97 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~--~l~-~~~~~~~L~~L~L~~~~i~~l~~ 97 (353)
++.++.+.+|++|.+.+|++.. .-..+..++ ||.+.++.|+++ .+| +++.++.|..|||++|++.+.|.
T Consensus 48 PeEL~~lqkLEHLs~~HN~L~~-------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQLIS-------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhhHh-------hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch
Confidence 6677788888888888887632 223333344 888888888765 455 67788888888888888888888
Q ss_pred CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc-------------
Q 043910 98 GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA------------- 164 (353)
Q Consensus 98 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 164 (353)
.....+++-.|++++++ +..++ -+.+.++..|-.|++++ +.+..+|+.+..+.+|++|.+++|.
T Consensus 121 ~LE~AKn~iVLNLS~N~-IetIP-n~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNN-IETIP-NSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT 197 (1255)
T ss_pred hhhhhcCcEEEEcccCc-cccCC-chHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch
Confidence 88888888888888764 33343 23455666666777776 3455555555545455555554443
Q ss_pred -----------Cc--ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEee
Q 043910 165 -----------IE--ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLR 231 (353)
Q Consensus 165 -----------i~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~ 231 (353)
-+ .+|.++..+.+|..+|++. +.+..+|+.+.++++|+.|++++|.|+.+....+...+|++|+++
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccc
Confidence 22 5677777788888888886 567778888888888888999988888776666777788899999
Q ss_pred CCCCcccchhHhhccCCceeccccccc-cccCCCCCCC---cceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 232 KTKFEKIPTNVIHLSRLHSFCLSYCER-LQSLPKLPCN---LKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 232 ~~~l~~l~~~l~~l~~L~~L~l~~~~~-l~~l~~~~~~---L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
.|+++.+|..+..+++|+.|.+.+|.. ...+|....+ |+.+...+ ..++-+|.+.-. |..|+.|.+.....++
T Consensus 277 rNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcR--C~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 277 RNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCR--CVKLQKLKLDHNRLIT 353 (1255)
T ss_pred cchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhh--hHHHHHhcccccceee
Confidence 999989999888999999988877543 3677877654 44444444 357777766554 6666666665554333
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-22 Score=172.33 Aligned_cols=280 Identities=26% Similarity=0.293 Sum_probs=198.4
Q ss_pred EEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC-CCCCCCceEE
Q 043910 8 ICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS-ITHPAKLVLL 85 (353)
Q Consensus 8 i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~-~~~~~~L~~L 85 (353)
..++++.+....+.. .+..+..|..++..+|+++ ..++++.+.. +..+++.++.++.+|+ ...++.|+.+
T Consensus 117 ~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i~-------slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 117 VKLDCSSNELKELPD-SIGRLLDLEDLDATNNQIS-------SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhccccceeecCc-hHHHHhhhhhhhccccccc-------cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 344555554444443 3455666777777777763 3445554444 7777788888777763 3357788888
Q ss_pred EccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhh-cCCCccEEEccCcc
Q 043910 86 EVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTA 164 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 164 (353)
|...|-++.+|+..+.+.+|..|++.++. +...+.|..|..|.+|++.. ++++.+|.+.+ .+.++..|++++|+
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nk----i~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNK----IRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcc----cccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccc
Confidence 88888888888888888888888887763 33455677777777777776 46666676655 67778888888888
Q ss_pred CcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCcc---------------------------------
Q 043910 165 IEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG--------------------------------- 211 (353)
Q Consensus 165 i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~--------------------------------- 211 (353)
++++|..+..+.+|.+||+++ +.++.+|.+++++ +|+.|.+.+|.
T Consensus 264 lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred cccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 888888887788888888886 5677788778887 78888888776
Q ss_pred --------------------------------------------------------------------------------
Q 043910 212 -------------------------------------------------------------------------------- 211 (353)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (353)
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence
Q ss_pred --CCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCC-----------------------C--
Q 043910 212 --ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP-----------------------K-- 264 (353)
Q Consensus 212 --i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~-----------------------~-- 264 (353)
+..+|..+..+++|..|++++|.+..+|..++.+..|+.++++.| ....+| .
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHH
Confidence 112344456678888999999888899998888888999999886 222322 2
Q ss_pred --CCCCcceeecCCCcCccccCccccccccccccEEEecCCccC
Q 043910 265 --LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKL 306 (353)
Q Consensus 265 --~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l 306 (353)
.+.+|..||+.++ .++.+|... +.+++++.|++++.+--
T Consensus 501 l~nm~nL~tLDL~nN-dlq~IPp~L--gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNN-DLQQIPPIL--GNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCC-chhhCChhh--ccccceeEEEecCCccC
Confidence 2356777888774 577777654 34888999999988654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=159.74 Aligned_cols=256 Identities=23% Similarity=0.251 Sum_probs=175.6
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccC
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPH 89 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~ 89 (353)
+|++.....+++.. +. ++|+.|++.+|.++. .+.. .+.|++|++++|+++.+|.. .++|+.|++++
T Consensus 206 LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~-------LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~ 271 (788)
T PRK15387 206 LNVGESGLTTLPDC-LP--AHITTLVIPDNNLTS-------LPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFS 271 (788)
T ss_pred EEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCC-------CCCC--CCCCcEEEecCCccCcccCc--ccccceeeccC
Confidence 45555544444432 22 478889998888753 2221 13388999999988888754 47888889988
Q ss_pred CCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccC
Q 043910 90 SNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELP 169 (353)
Q Consensus 90 ~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~ 169 (353)
|.++.++. ...+|+.|++++|. ++.++. ..++|++|++++|. +..+|.. ..+|+.|++++|.++.+|
T Consensus 272 N~L~~Lp~---lp~~L~~L~Ls~N~-Lt~LP~-----~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 272 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV-----LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred Cchhhhhh---chhhcCEEECcCCc-cccccc-----cccccceeECCCCc-cccCCCC---cccccccccccCcccccc
Confidence 88887764 23567888888763 444432 24678999998864 4445542 346778888888888777
Q ss_pred ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCc
Q 043910 170 SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLH 249 (353)
Q Consensus 170 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~ 249 (353)
.. ..+|++|++++| .++.+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.+..+|.. .++|+
T Consensus 339 ~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~ 405 (788)
T PRK15387 339 TL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELK 405 (788)
T ss_pred cc---ccccceEecCCC-ccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCC
Confidence 42 257888888874 56667753 35677788888888877753 35688888888888877753 35788
Q ss_pred eeccccccccccCCCCCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH
Q 043910 250 SFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 250 ~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
.|++++|. ++.+|..+.+|+.|+++++ .++.+|.... .+..++.+++++++ ++...
T Consensus 406 ~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~--~L~~L~~LdLs~N~-Ls~~~ 461 (788)
T PRK15387 406 ELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLI--HLSSETTVNLEGNP-LSERT 461 (788)
T ss_pred EEEccCCc-CCCCCcchhhhhhhhhccC-cccccChHHh--hccCCCeEECCCCC-CCchH
Confidence 88888854 6678877778888888875 4777776533 35678888888884 44433
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-20 Score=162.48 Aligned_cols=259 Identities=24% Similarity=0.320 Sum_probs=157.4
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC-CCCCCCCceEEEccCCCccccCCCCcCCCCc
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQLGDGGQHHCKL 105 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L 105 (353)
-..|+.+++++|.+.. ..+.+..+. +..+.+.++++..+| +++.+..++.++.++|++++++........+
T Consensus 44 qv~l~~lils~N~l~~-------l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV-------LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISL 116 (565)
T ss_pred hcchhhhhhccCchhh-------ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhh
Confidence 3456677777776633 223333333 777777777766666 4446677777777777777777777777777
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccC
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 185 (353)
++++++++...+ . .+.++.+-.|+.++..+ +.+..+|.++.++.++..+++.+|+++.+|+..-.++.|+++|...
T Consensus 117 ~~l~~s~n~~~e-l--~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 117 VKLDCSSNELKE-L--PDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhccccceee-c--CchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence 777777665432 2 23455666666666665 3445556666666666667777777666666555566666666665
Q ss_pred CCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHh-hccCCceeccccccccccCCC
Q 043910 186 CKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVI-HLSRLHSFCLSYCERLQSLPK 264 (353)
Q Consensus 186 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~-~l~~L~~L~l~~~~~l~~l~~ 264 (353)
+.++.+|+.++.+.+|+.|++.+|.+..+|+ |..|+.|.++.++.|++..+|.... +++++..||++. +.++++|.
T Consensus 193 -N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pd 269 (565)
T KOG0472|consen 193 -NLLETLPPELGGLESLELLYLRRNKIRFLPE-FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPD 269 (565)
T ss_pred -hhhhcCChhhcchhhhHHHHhhhcccccCCC-CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCch
Confidence 4566666666666666666666666666663 6666666666666666666665544 566666666666 35566665
Q ss_pred CC---CCcceeecCCCcCccccCccccccccccccEEEecCCc
Q 043910 265 LP---CNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 265 ~~---~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
.. .+|.+||++++ .++.+|....- . .|+.+.+.|.|
T Consensus 270 e~clLrsL~rLDlSNN-~is~Lp~sLgn--l-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNN-DISSLPYSLGN--L-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCC-ccccCCccccc--c-eeeehhhcCCc
Confidence 32 34556666653 45555443222 2 34555555554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=152.54 Aligned_cols=246 Identities=18% Similarity=0.213 Sum_probs=153.1
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEE
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQI 108 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L 108 (353)
.+.+.|+++++.++. .|..+. ..++.|++++|.++.+|... .++|+.|++++|.++.++..+ ..+|+.|
T Consensus 178 ~~~~~L~L~~~~Lts-------LP~~Ip-~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLTT-------IPACIP-EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL--PDTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcCc-------CCcccc-cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh--hccccEE
Confidence 356777777766642 122111 13777888888877777543 357888888888877776533 3467788
Q ss_pred ecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCC
Q 043910 109 ITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKR 188 (353)
Q Consensus 109 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~ 188 (353)
++++|. ++.++ ..+ ..+|+.|++++| .+..+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++| .
T Consensus 247 ~Ls~N~-L~~LP--~~l--~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~ 315 (754)
T PRK15370 247 ELSINR-ITELP--ERL--PSALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-S 315 (754)
T ss_pred ECcCCc-cCcCC--hhH--hCCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-c
Confidence 887764 33332 122 246788888764 3445665442 478888888887777765442 46777777774 3
Q ss_pred CcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCC-C
Q 043910 189 LKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLP-C 267 (353)
Q Consensus 189 ~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~ 267 (353)
+..+|..+ .++|+.|++++|.++.+|..+. ++|+.|++++|++..+|..+ .++|+.|++++| .++.+|..+ .
T Consensus 316 Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~~ 388 (754)
T PRK15370 316 LTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRN-ALTNLPENLPA 388 (754)
T ss_pred cccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCC-cCCCCCHhHHH
Confidence 55565433 3567777888877777765443 57788888888777776644 357778888775 355666433 4
Q ss_pred CcceeecCCCcCccccCcccc--ccccccccEEEecCCc
Q 043910 268 NLKELDADHCAALESLSDLFS--ISYDYYIRCFELSTNY 304 (353)
Q Consensus 268 ~L~~L~l~~c~~l~~~~~~~~--~~~~~~l~~l~~~~c~ 304 (353)
.|+.|++++| .++.+|.... ....+.+..+++.+++
T Consensus 389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6777777775 4566654321 1123445667777664
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-16 Score=150.87 Aligned_cols=238 Identities=18% Similarity=0.254 Sum_probs=169.7
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
.+++++.+..+++.. + .++|+.|++++|.++. . +..+ ...|++|++++|.++.+|... .++|+.|+++
T Consensus 182 ~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N~Lts-L------P~~l-~~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls 249 (754)
T PRK15370 182 ELRLKILGLTTIPAC-I--PEQITTLILDNNELKS-L------PENL-QGNIKTLYANSNQLTSIPATL-PDTIQEMELS 249 (754)
T ss_pred EEEeCCCCcCcCCcc-c--ccCCcEEEecCCCCCc-C------Chhh-ccCCCEEECCCCccccCChhh-hccccEEECc
Confidence 345555544444432 2 3579999999998863 2 2222 124999999999999888533 4589999999
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+|.+..++..+ ..+|+.|++++| .++.++. .+ .++|+.|++++|+ +..+|..+ ..+|+.|++++|.++.+
T Consensus 250 ~N~L~~LP~~l--~s~L~~L~Ls~N-~L~~LP~--~l--~~sL~~L~Ls~N~-Lt~LP~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 250 INRITELPERL--PSALQSLDLFHN-KISCLPE--NL--PEELRYLSVYDNS-IRTLPAHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred CCccCcCChhH--hCCCCEEECcCC-ccCcccc--cc--CCCCcEEECCCCc-cccCcccc--hhhHHHHHhcCCccccC
Confidence 99998887654 357999999865 4554432 22 2589999999964 44566543 24788999999999888
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCC
Q 043910 169 PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L 248 (353)
|..+. ++|++|++++|. ++.+|..+ +++|+.|++++|+++.+|..+. ++|+.|++++|.+..+|..+. ..|
T Consensus 320 P~~l~--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL 390 (754)
T PRK15370 320 PETLP--PGLKTLEAGENA-LTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AAL 390 (754)
T ss_pred Ccccc--ccceeccccCCc-cccCChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHH
Confidence 76543 689999998864 66677654 3689999999999888876553 689999999999988887654 368
Q ss_pred ceeccccccccccCCCCC-------CCcceeecCCCc
Q 043910 249 HSFCLSYCERLQSLPKLP-------CNLKELDADHCA 278 (353)
Q Consensus 249 ~~L~l~~~~~l~~l~~~~-------~~L~~L~l~~c~ 278 (353)
+.|++++| .+..+|..+ +.+..+++.+++
T Consensus 391 ~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 391 QIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 88999885 455666532 456778887764
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-18 Score=161.05 Aligned_cols=213 Identities=27% Similarity=0.361 Sum_probs=118.0
Q ss_pred cceEeecccCCCCCCCCC-CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSIT-HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~-~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
+++++++.+.+..+|++. .+.+|+.++..+|++..++.......+|+.+.+..|. +..+ ++....++.|++|++..
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yi--p~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYI--PPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhC--CCcccccceeeeeeehh
Confidence 666666666666666433 5666666666666666666666666666666666553 2222 23445577888888887
Q ss_pred CCCCcccchhhh--------------------------cCCCccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcc
Q 043910 139 CSQLKRLPAEIL--------------------------SAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKS 191 (353)
Q Consensus 139 ~~~~~~~~~~~~--------------------------~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~ 191 (353)
| .+..+|+.+. ....|+.|++.+|.++ ..-+.+.++++|+.|++++ +.+..
T Consensus 320 N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~ 397 (1081)
T KOG0618|consen 320 N-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNS 397 (1081)
T ss_pred c-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-ccccc
Confidence 4 4555554331 1123444555555555 2333445555666666665 34555
Q ss_pred cCc-cccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccc-cCCC-CC-C
Q 043910 192 LPK-GLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQ-SLPK-LP-C 267 (353)
Q Consensus 192 l~~-~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~-~l~~-~~-~ 267 (353)
+|+ .+.++..|+.|++++|.++.+|..+..+..|++|...+|++..+| .+.++++|+.+|++.|+.-. .++. .+ +
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 553 345555566666666666666555555566666666556555555 45556666666665533211 1121 22 4
Q ss_pred CcceeecCCCc
Q 043910 268 NLKELDADHCA 278 (353)
Q Consensus 268 ~L~~L~l~~c~ 278 (353)
+|++||++|++
T Consensus 477 ~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 477 NLKYLDLSGNT 487 (1081)
T ss_pred ccceeeccCCc
Confidence 56666666554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.9e-18 Score=159.37 Aligned_cols=266 Identities=23% Similarity=0.301 Sum_probs=201.2
Q ss_pred hcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCc
Q 043910 26 TKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKL 105 (353)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L 105 (353)
..+++|+.|....|.+.. . .+..++++.|+...|.++.+...+...+|+++++++++++.++.-+..+.+|
T Consensus 196 s~~~~l~~l~c~rn~ls~-----l----~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSE-----L----EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANL 266 (1081)
T ss_pred hhccchhhhhhhhcccce-----E----EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccc
Confidence 356666666666655522 0 1123448888888888876666667889999999999999999777889999
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccc-------------
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSI------------- 172 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~------------- 172 (353)
+.++..++.. +.. +..+....+|+.|....| .++.+|......++|++|++..|.+..+|..+
T Consensus 267 e~l~~n~N~l-~~l--p~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 267 EALNANHNRL-VAL--PLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred eEecccchhH-Hhh--HHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 9999998754 333 235667788999998884 56677777777999999999999988776422
Q ss_pred -------------cCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCccc
Q 043910 173 -------------ECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 173 -------------~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l 238 (353)
..++.|+.|.+.+|..-+..-+.+.+..+|+.|++++|++..+|. .+.++..|++|+++||.++.+
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 112345556666644333333347788999999999999998886 467888999999999999999
Q ss_pred chhHhhccCCceeccccccccccCCCC--CCCcceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 239 PTNVIHLSRLHSFCLSYCERLQSLPKL--PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
|..+..+++|+.|...+ +.+..+|+. .+.|+.+|++. ..|+.+......+. ++|+.|++++..++.
T Consensus 423 p~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred hHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 99999999999998766 567777763 47899999985 57888776666532 789999999998654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=146.52 Aligned_cols=232 Identities=25% Similarity=0.260 Sum_probs=177.3
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEE
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQI 108 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L 108 (353)
.+-..|+++++.++. . |..+. ..++.|++.+|+++.+|.. +++|++|++++|+++.++. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lts-L------P~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~---lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTT-L------PDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV---LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCc-C------Ccchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC---ccccccee
Confidence 457789999998853 2 22221 2489999999999999864 6899999999999998864 25789999
Q ss_pred ecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCC
Q 043910 109 ITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKR 188 (353)
Q Consensus 109 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~ 188 (353)
++++|. ++.++. ...+|+.|++++|. +..+|. .+++|+.|++++|.++.+|... .+|+.|++++| .
T Consensus 268 ~Ls~N~-L~~Lp~-----lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~ 333 (788)
T PRK15387 268 SIFSNP-LTHLPA-----LPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-Q 333 (788)
T ss_pred eccCCc-hhhhhh-----chhhcCEEECcCCc-cccccc---cccccceeECCCCccccCCCCc---ccccccccccC-c
Confidence 999874 444432 23678899999964 556664 2478999999999999887633 46788889885 4
Q ss_pred CcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCC
Q 043910 189 LKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCN 268 (353)
Q Consensus 189 ~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 268 (353)
++.+|.. ..+|+.|++++|+++.+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++| .++.+|..+++
T Consensus 334 L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l~s~ 403 (788)
T PRK15387 334 LTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVLPSE 403 (788)
T ss_pred ccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCC-cccCCCCcccC
Confidence 6667742 35799999999999988863 35788999999999888863 357999999986 57788888889
Q ss_pred cceeecCCCcCccccCccccccccccccEEEecCC
Q 043910 269 LKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 269 L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
|+.|+++++. ++.+|.. +.+|+.|+++++
T Consensus 404 L~~LdLS~N~-LssIP~l-----~~~L~~L~Ls~N 432 (788)
T PRK15387 404 LKELMVSGNR-LTSLPML-----PSGLLSLSVYRN 432 (788)
T ss_pred CCEEEccCCc-CCCCCcc-----hhhhhhhhhccC
Confidence 9999999974 7777743 235667777765
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-18 Score=131.50 Aligned_cols=161 Identities=25% Similarity=0.386 Sum_probs=117.4
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLL 179 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 179 (353)
+.+.+++.|.++++. ++.+ ++.++.+.+|+.|++++ +.++++|.++.++++|+.|++.-|++..+|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNK-l~~v--ppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVV--PPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCc-eeec--CCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 344455555555543 2222 34566677777777776 4667777778888888888888888778888888888888
Q ss_pred EEeccCCCCCc-ccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccc
Q 043910 180 HLGLRDCKRLK-SLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 180 ~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
.||+++|+... .+|..|..+..|+.|.++.|.+.-+|..++.+++|+.|.++.|.+.++|..++.+++|+.|.+.+| .
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-r 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-R 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-e
Confidence 88888766543 467777778888888888888888888888888888888888888888888888888888888874 4
Q ss_pred cccCCCC
Q 043910 259 LQSLPKL 265 (353)
Q Consensus 259 l~~l~~~ 265 (353)
++-+|..
T Consensus 185 l~vlppe 191 (264)
T KOG0617|consen 185 LTVLPPE 191 (264)
T ss_pred eeecChh
Confidence 5555543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-17 Score=129.63 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=93.9
Q ss_pred CCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhc
Q 043910 72 SLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS 151 (353)
Q Consensus 72 ~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 151 (353)
.++..+.+.++..|.+++|+++.+++.+..+.+|+.|+++++ ++++. +..++.+++|+.|++.- +.+...|..|+.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~l--p~~issl~klr~lnvgm-nrl~~lprgfgs 100 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEEL--PTSISSLPKLRILNVGM-NRLNILPRGFGS 100 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhc--Chhhhhchhhhheecch-hhhhcCccccCC
Confidence 444555555566666666666666655555666666665543 23333 23455556666666554 233445555666
Q ss_pred CCCccEEEccCccCc--ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEE
Q 043910 152 AGNMEEMILNGTAIE--ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 229 (353)
++.|+.|++.+|++. .+|..|..+..|+.|.++. +...-+|..++++++|+.|.+..|.+..+|..++.+..|++|.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 666666666665554 4555555555555555555 3344455555666666666666665555665566666666666
Q ss_pred eeCCCCcccchhHhh
Q 043910 230 LRKTKFEKIPTNVIH 244 (353)
Q Consensus 230 l~~~~l~~l~~~l~~ 244 (353)
+.+|+++.+|+.+++
T Consensus 180 iqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 180 IQGNRLTVLPPELAN 194 (264)
T ss_pred cccceeeecChhhhh
Confidence 666666555555443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-16 Score=135.67 Aligned_cols=285 Identities=16% Similarity=0.106 Sum_probs=165.2
Q ss_pred EEEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cce-EeecccCCCCCCC--CCCCCCc
Q 043910 7 GICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRY-LFWHGYPLKSLPS--ITHPAKL 82 (353)
Q Consensus 7 ~i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~-L~l~~~~~~~l~~--~~~~~~L 82 (353)
.+.+++..+.+..+.+.+|+.+++||+||++.|+++.. .+.+|.-+. +.. +..++|+++.+|. +..+..|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI------APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhc------ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 34455666666778888888888888888888887542 234444444 333 3344477777773 3366777
Q ss_pred eEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc------------cchhh
Q 043910 83 VLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR------------LPAEI 149 (353)
Q Consensus 83 ~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~ 149 (353)
+.|.+.-|++.-+. +.+..++++..|.+.++.. ..+. ...+..+..++.+.+..|.++.+ .|..+
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~-~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSIC-KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhc-cccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 77777777665543 2344566666666666532 1121 23566666777776666543211 12222
Q ss_pred hcCCCccEEEccCccCcccCcc-ccC-CCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC-cccCCCCCC
Q 043910 150 LSAGNMEEMILNGTAIEELPSS-IEC-LSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP-ENLGQLFSL 225 (353)
Q Consensus 150 ~~~~~L~~L~l~~~~i~~l~~~-~~~-l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L 225 (353)
+.........+.+.++..+... +.. +..+..--.+.|......|. .|..+++|+.|++++|.++.+. .++.....+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 2233333333333344333221 111 11111111223333444442 4677888888888888877653 456777778
Q ss_pred cEEEeeCCCCcccch-hHhhccCCceeccccccccccCCCCCCCcceeecCCCcCccccCccccccccccccEEEecCCc
Q 043910 226 EEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 226 ~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
++|.+..|++..+.. .+.++.+|+.|++.+| .++.+.+..+. ....|.++.+-..|
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N----------------------~it~~~~~aF~-~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN----------------------QITTVAPGAFQ-TLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCC----------------------eeEEEeccccc-ccceeeeeehccCc
Confidence 888888887765544 4456666666666654 34555444442 34567888888888
Q ss_pred cCchHHHHhHHHHHHHhh
Q 043910 305 KLDRNELRSILEDALQKI 322 (353)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~ 322 (353)
..++.....+.+|.+.+-
T Consensus 358 ~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 358 FNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred ccCccchHHHHHHHhhCC
Confidence 888989999988877654
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-14 Score=130.35 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=24.9
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCC
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK 71 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 71 (353)
...|..+++|++|++++|.++..... .....+...+ +++++++++.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~--~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAK--ALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHH--HHHHHHhhCCCceEEeccccccC
Confidence 34556677788888888776432111 1111222222 666666665543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-14 Score=126.78 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=17.0
Q ss_pred cceEeecccCCCC-----CC-CCCCCCCceEEEccCCCcc
Q 043910 60 IRYLFWHGYPLKS-----LP-SITHPAKLVLLEVPHSNIQ 93 (353)
Q Consensus 60 L~~L~l~~~~~~~-----l~-~~~~~~~L~~L~L~~~~i~ 93 (353)
++.++++++.++. ++ .....++++.++++++.+.
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 6666666666532 12 1223445666666555443
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-13 Score=119.57 Aligned_cols=197 Identities=22% Similarity=0.221 Sum_probs=137.1
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeee-CCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYN-SSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVL 84 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~ 84 (353)
.+|++++.+..+.+++|+++++|.+|.+.+ |.++... ...|..+. ++-|.+.-+++..++ .+..++++..
T Consensus 95 rLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~------k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 95 RLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP------KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred eecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh------hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 468888888889999999999999988888 6664321 22344455 888888888888877 3447889999
Q ss_pred EEccCCCccccCC-CCcCCCCccEEecCCCcCcC----------------------------------------------
Q 043910 85 LEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVT---------------------------------------------- 117 (353)
Q Consensus 85 L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~---------------------------------------------- 117 (353)
|.+.+|.++.+.. .+.....++.+.+..+.++-
T Consensus 169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 9999998887765 33334555555433332110
Q ss_pred ----------CCCC----CccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEe
Q 043910 118 ----------KTPN----PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLG 182 (353)
Q Consensus 118 ----------~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~ 182 (353)
+.++ ...|..+++|+.|++++|.....-+..|....++++|++.+|++..+.. .|..+..|++|+
T Consensus 249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 0000 0147788899999999876655555667778888888888888775543 466778888888
Q ss_pred ccCCCCCcccCccccCCCCCCEEEeeCcc
Q 043910 183 LRDCKRLKSLPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 183 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 211 (353)
+++|+.....|..|..+.+|.+|++-.|.
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCc
Confidence 88865444456667777888888877664
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.5e-12 Score=123.82 Aligned_cols=232 Identities=24% Similarity=0.334 Sum_probs=144.9
Q ss_pred CCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcC-cCCCCCCccccCCccCcEEeecCCCCCcccchhhhc
Q 043910 73 LPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNF-VTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS 151 (353)
Q Consensus 73 l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 151 (353)
.|........+...+-++.+..++.. ..+++|+.|.+..+.. +..++ ...|..++.|++||+++|...+.+|..++.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccccchhheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 44444445566666666666655432 3344676666666542 22222 234677888888888887777888888888
Q ss_pred CCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC---ccCcccCCCCCCcEE
Q 043910 152 AGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT---QLPENLGQLFSLEEF 228 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~---~~~~~~~~l~~L~~L 228 (353)
+-+|++|+++++.+..+|..+..+++|.+|++..+.....+|.....+++|++|.+...... ..-..+..+.+|+.+
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 88888888888888888888888888888888876666666655556888888877665421 111223344444444
Q ss_pred EeeCCCC--------------------------cccchhHhhccCCceeccccccccccCCC--------C-CCCcceee
Q 043910 229 CLRKTKF--------------------------EKIPTNVIHLSRLHSFCLSYCERLQSLPK--------L-PCNLKELD 273 (353)
Q Consensus 229 ~l~~~~l--------------------------~~l~~~l~~l~~L~~L~l~~~~~l~~l~~--------~-~~~L~~L~ 273 (353)
.+..... ...+..+..+.+|+.|.+.+|........ . ++++..+.
T Consensus 674 s~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 674 SITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred eeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 4433321 22333445566677777776654322111 1 44566667
Q ss_pred cCCCcCccccCccccccccccccEEEecCCccCchH
Q 043910 274 ADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRN 309 (353)
Q Consensus 274 l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~ 309 (353)
+.+|..+.+..+..+. ++|+.+.+..|..+.+.
T Consensus 754 ~~~~~~~r~l~~~~f~---~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLFA---PHLTSLSLVSCRLLEDI 786 (889)
T ss_pred hhccccccccchhhcc---CcccEEEEecccccccC
Confidence 7777777777766554 67888899999777653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-11 Score=111.48 Aligned_cols=191 Identities=27% Similarity=0.325 Sum_probs=129.4
Q ss_pred EeecccCC-CCCCCCCCCCCceEEEccCCCccccCCCCcCCC-CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCC
Q 043910 63 LFWHGYPL-KSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC-KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCS 140 (353)
Q Consensus 63 L~l~~~~~-~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 140 (353)
+....+.+ .........+.++.+++.++.+..++....... +|+.|+++++.. ...+ ..+..+++|+.|++++|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~--~~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLP--SPLRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhh--hhhhccccccccccCCc-
Confidence 55555554 333344455677888888888877777666664 788888877632 1111 35677788888888874
Q ss_pred CCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccC
Q 043910 141 QLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLG 220 (353)
Q Consensus 141 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 220 (353)
.+.++|...+..++|+.|++++|.+..+|..+.....|+++.+++|. ....+..+..+.++..+.+.++++..++..++
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhc
Confidence 45566655556778888888888888887766566668888887754 33344446677777777777777776666677
Q ss_pred CCCCCcEEEeeCCCCcccchhHhhccCCceecccccccc
Q 043910 221 QLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERL 259 (353)
Q Consensus 221 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l 259 (353)
.+++++.|++++|.+..++. ++...+++.|+++++...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 77778888888887776666 667777888888775444
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-12 Score=118.47 Aligned_cols=171 Identities=24% Similarity=0.354 Sum_probs=95.9
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+..-...|++.|++..++.....+..|..+.+.++..- .+ ...+..+..|++|+++.| .+..+|..++.+ -|+.|
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~i--p~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TI--PEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVL 148 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ec--chhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeE
Confidence 44445556666666666655555555555555544321 11 234555666666666663 344445444433 35666
Q ss_pred EccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCccc
Q 043910 159 ILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 159 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l 238 (353)
.+++|+++.+|..++....|..||.+.|. +..+|..++.+.+|+.|++.+|++..+|+.+. .-.|..||++.|++..+
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~i 226 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYL 226 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeec
Confidence 66666666666666655666666666533 44455555566666666666666666665555 33455666666666666
Q ss_pred chhHhhccCCceeccccc
Q 043910 239 PTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~ 256 (353)
|-.+.+++.|+.|-+.+|
T Consensus 227 Pv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENN 244 (722)
T ss_pred chhhhhhhhheeeeeccC
Confidence 666666666666665554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-11 Score=94.95 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh
Q 043910 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI 149 (353)
Q Consensus 70 ~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 149 (353)
++..+...++..+++|+|.+|.|+.+......+.+|+.|++++|. ++ ....+..+++|++|++++| .++.++..+
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~---~l~~l~~L~~L~~L~L~~N-~I~~i~~~l 83 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-IT---KLEGLPGLPRLKTLDLSNN-RISSISEGL 83 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS---S-----TT----TT--EEE--SS----S-CHHH
T ss_pred cccccccccccccccccccccccccccchhhhhcCCCEEECCCCC-Cc---cccCccChhhhhhcccCCC-CCCccccch
Confidence 333333334444555555555554443221234445555555442 11 1223334455555555553 222232222
Q ss_pred -hcCCCccEEEccCccCcccC--ccccCCCCCCEEeccCC
Q 043910 150 -LSAGNMEEMILNGTAIEELP--SSIECLSRLLHLGLRDC 186 (353)
Q Consensus 150 -~~~~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~ 186 (353)
..+++|++|++++|+|..+. ..+..+++|++|++.+|
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 23455555555555444321 12334455555555543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-11 Score=101.97 Aligned_cols=192 Identities=20% Similarity=0.222 Sum_probs=126.6
Q ss_pred cceEeecccCCCCCCCCC-CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSIT-HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~-~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
|..+.++.+..+.+..+. .-+.|+.+.+.+..++..+. ......+....-..-.-.+ .+....+..+..|+++++++
T Consensus 216 l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~-G~~~~~~dTWq~LtelDLS~ 293 (490)
T KOG1259|consen 216 LKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSN-GSALVSADTWQELTELDLSG 293 (490)
T ss_pred hheeeeeccchhheeceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccC-CceEEecchHhhhhhccccc
Confidence 566666666655444333 33566666666655554322 1111222222111111111 11122455667888999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN 218 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~ 218 (353)
+.++.+..+..-.++++.|++++|.|..+.. +..+++|+.||+++ +.+..+...-.++.+++.|.+++|.+..+. +
T Consensus 294 -N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-G 369 (490)
T KOG1259|consen 294 -NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQNKIETLS-G 369 (490)
T ss_pred -cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhhhhHhhhh-h
Confidence 5667777777788899999999999887754 77889999999998 446655544457888899999998877654 3
Q ss_pred cCCCCCCcEEEeeCCCCccc--chhHhhccCCceecccccc
Q 043910 219 LGQLFSLEEFCLRKTKFEKI--PTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~l--~~~l~~l~~L~~L~l~~~~ 257 (353)
+..+-+|..||+++|++..+ ...++++|.|+.+.+.+|+
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 66777899999999988744 3468889999999888864
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-12 Score=111.53 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred cceEeecccCCCCCCC---CCCCCCceEEEccCCCccccC---CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcE
Q 043910 60 IRYLFWHGYPLKSLPS---ITHPAKLVLLEVPHSNIQQLG---DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTI 133 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~---~~~~~~L~~L~L~~~~i~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 133 (353)
|+.+.|.++.+...+. .-.+++++.|||+.|-+..+. .....+|+|+.|+++.|........ ..-..++.|+.
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l~~lK~ 201 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLLSHLKQ 201 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhhhhhhe
Confidence 5555555555544441 124555566666555444322 2233455555555555533221111 11123445555
Q ss_pred EeecCCCCCcc-cchhhhcCCCccEEEccCcc-CcccCccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCc
Q 043910 134 LNLSGCSQLKR-LPAEILSAGNMEEMILNGTA-IEELPSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGC 210 (353)
Q Consensus 134 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 210 (353)
|.++.|..... +......+++|+.|++.+|. +..-.....-+..|+.|++++|+.++.-- ...+.++.|+.|+++.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 55555544321 22223345555555555552 21111112223445555555544433210 12345555555555555
Q ss_pred cCCc--cCcc-----cCCCCCCcEEEeeCCCCcccch--hHhhccCCceecccc
Q 043910 211 GITQ--LPEN-----LGQLFSLEEFCLRKTKFEKIPT--NVIHLSRLHSFCLSY 255 (353)
Q Consensus 211 ~i~~--~~~~-----~~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~ 255 (353)
++.+ +|.. ....++|+.|++..|++..++. .+..+++|+.|.+.+
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 5542 2221 1234455555555555543332 233444445544443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-10 Score=107.31 Aligned_cols=176 Identities=25% Similarity=0.367 Sum_probs=145.2
Q ss_pred cceEeecccCCCCCCCCCCCC--CceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLPSITHPA--KLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~--~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
+..+++.++.+..++...... +|+.|++++|++..++.....+++|+.|+++.|. +++++ ...+..+.|+.|+++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~--~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLP--KLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhh--hhhhhhhhhhheecc
Confidence 889999999999999766543 8999999999999987778899999999999984 23232 123378899999999
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
+ +.+..+|.....+..|+++.+++|.+...+..+..+.++..+.+.. +.+..++..++.+++++.|++++|.++.++.
T Consensus 195 ~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 195 G-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred C-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhccccccceecccccccccccc
Confidence 9 4667778766667789999999998777777888889999998776 5566556778899999999999999998887
Q ss_pred ccCCCCCCcEEEeeCCCCcccchh
Q 043910 218 NLGQLFSLEEFCLRKTKFEKIPTN 241 (353)
Q Consensus 218 ~~~~l~~L~~L~l~~~~l~~l~~~ 241 (353)
++...+++.|+++++.+...+..
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -ccccCccCEEeccCccccccchh
Confidence 88889999999999988755443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-11 Score=99.85 Aligned_cols=130 Identities=26% Similarity=0.310 Sum_probs=62.5
Q ss_pred CCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEE
Q 043910 80 AKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMI 159 (353)
Q Consensus 80 ~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 159 (353)
+.|+.+||++|.|+.+.......|+++.|++++|...+ ...++.+++|+.|++++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~----v~nLa~L~~L~~LDLS~--------------------- 338 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT----VQNLAELPQLQLLDLSG--------------------- 338 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee----ehhhhhcccceEeeccc---------------------
Confidence 34555555555555555555555555555555542211 12244445555555555
Q ss_pred ccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc--CcccCCCCCCcEEEeeCCCCcc
Q 043910 160 LNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL--PENLGQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 160 l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~~~l~~ 237 (353)
|.++.+.-+-..+-++++|.+++ +.+..+. .+.++-+|..|++.+|+|..+ ...++.++.|+++.+.+|++..
T Consensus 339 ---N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 339 ---NLLAECVGWHLKLGNIKTLKLAQ-NKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ---chhHhhhhhHhhhcCEeeeehhh-hhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 44443333333444445555554 2233332 244455555555555555422 1235556666666666666554
Q ss_pred cc
Q 043910 238 IP 239 (353)
Q Consensus 238 l~ 239 (353)
++
T Consensus 414 ~v 415 (490)
T KOG1259|consen 414 SV 415 (490)
T ss_pred cc
Confidence 43
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-10 Score=91.65 Aligned_cols=124 Identities=26% Similarity=0.320 Sum_probs=37.3
Q ss_pred CCccCcEEeecCCCCCcccchhhh-cCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccc-cCCCCCCE
Q 043910 127 SLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGL-CKLKSLKF 204 (353)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~ 204 (353)
+..++++|++.+|. +..+. .++ .+.+|+.|++++|.|+.+. .+..+++|++|++++ +.++.+.+.+ ..+++|+.
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred cccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 33455566666532 22222 132 3455666666666666553 355566666666665 3344444323 24566666
Q ss_pred EEeeCccCCccC--cccCCCCCCcEEEeeCCCCcccc----hhHhhccCCceeccc
Q 043910 205 LILNGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIP----TNVIHLSRLHSFCLS 254 (353)
Q Consensus 205 L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~----~~l~~l~~L~~L~l~ 254 (353)
|++++|+|..+- ..+..+++|+.|++.+|++..-+ ..+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 666666665332 23455666777777777665322 235567777777643
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-10 Score=101.49 Aligned_cols=204 Identities=14% Similarity=0.164 Sum_probs=124.8
Q ss_pred cCCCCcEEEeeeCCCCCCccceeecCCCC-CCCccceEeecccCCCCCCC---CC-CCCCceEEEccCCCccccCC--CC
Q 043910 27 KMRKLRFLKFYNSSINGENKCKVSNIQDP-VFPEIRYLFWHGYPLKSLPS---IT-HPAKLVLLEVPHSNIQQLGD--GG 99 (353)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~---~~-~~~~L~~L~L~~~~i~~l~~--~~ 99 (353)
++++|+++.+.++....... -+.. .++.++.|+|+.|-+..+.. +. ++++|+.|+++.|++..... ..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~-----~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGI-----EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hHHhhhheeecCccccccch-----hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 57778888888776532110 0111 23338888888877665442 22 67888888888887765432 22
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccC--ccccCCCC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELP--SSIECLSR 177 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~--~~~~~l~~ 177 (353)
..+..++.|.++.|..- ..........+|+|+.|.+..|............+..|++|+|++|.+.+.+ ...++++.
T Consensus 194 ~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 35677888888887532 1111123456788888888886543333333444667888888888777555 45677788
Q ss_pred CCEEeccCCCCCc-ccCcc-----ccCCCCCCEEEeeCccCCccCc--ccCCCCCCcEEEeeCCCCc
Q 043910 178 LLHLGLRDCKRLK-SLPKG-----LCKLKSLKFLILNGCGITQLPE--NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 178 L~~L~l~~~~~~~-~l~~~-----~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~l~ 236 (353)
|..|+++.|..-+ ..|+. ....++|++|++..|+|...+. .+..+++|+.|.+..|++.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8888887754322 12221 2457788888888887764432 3445567777777777764
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-11 Score=109.07 Aligned_cols=190 Identities=21% Similarity=0.295 Sum_probs=141.1
Q ss_pred cceEeecccCCCCCCCCC-CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSIT-HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~-~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
-...+++.|++..+|.-+ .+..|+.+.++.|.+..++..+..+..|++++++.+.. ... +..++.++ |+.|-+++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~l--p~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHL--PDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcC--ChhhhcCc-ceeEEEec
Confidence 556777888888887433 56778888888888888888888888888888887642 112 12444444 78888887
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN 218 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~ 218 (353)
+.++.+|..++....|..|+.+.|.+..+|+-++.+.+|+.|.+..| .+..+|+.+.. -.|..||++.|.+..+|..
T Consensus 153 -Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~-LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 153 -NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCS-LPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred -CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhC-CceeeeecccCceeecchh
Confidence 46677787788788888888888888888888888888888888874 45567766663 3478888888888888888
Q ss_pred cCCCCCCcEEEeeCCCCcccchhHh---hccCCceeccccc
Q 043910 219 LGQLFSLEEFCLRKTKFEKIPTNVI---HLSRLHSFCLSYC 256 (353)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~l~~~l~---~l~~L~~L~l~~~ 256 (353)
+.+|..|++|.|.+|.+.+-|..+. ..+-.++|+...|
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888888888888888887666543 3344567777776
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.2e-11 Score=104.45 Aligned_cols=238 Identities=17% Similarity=0.138 Sum_probs=141.8
Q ss_pred CCCCceEEEccCC-Ccccc--CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc--cchhhhcC
Q 043910 78 HPAKLVLLEVPHS-NIQQL--GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR--LPAEILSA 152 (353)
Q Consensus 78 ~~~~L~~L~L~~~-~i~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~ 152 (353)
.+++|+.|++-.| .|+.. ......|++|++++++.|..+++-.......+++.++.+..++|...+. +-..-+.+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 3455555555542 23321 1123346666666666666555433223445555566665555543322 11111233
Q ss_pred CCccEEEccCcc-Ccc--cCccccCCCCCCEEeccCCCCCcccC--ccccCCCCCCEEEeeCcc-CC--ccCcccCCCCC
Q 043910 153 GNMEEMILNGTA-IEE--LPSSIECLSRLLHLGLRDCKRLKSLP--KGLCKLKSLKFLILNGCG-IT--QLPENLGQLFS 224 (353)
Q Consensus 153 ~~L~~L~l~~~~-i~~--l~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~-i~--~~~~~~~~l~~ 224 (353)
..+..+++..|. +++ +...-..+..|++++.++|..+++.+ .-..++++|+.+.+.+|+ ++ .+...-.+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 445556655652 332 22223456788888888887766543 123567889999998884 44 22232346678
Q ss_pred CcEEEeeCCCCc---ccchhHhhccCCceeccccccccccC-----C---CCCCCcceeecCCCcCccccCccccccccc
Q 043910 225 LEEFCLRKTKFE---KIPTNVIHLSRLHSFCLSYCERLQSL-----P---KLPCNLKELDADHCAALESLSDLFSISYDY 293 (353)
Q Consensus 225 L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~~l~~l-----~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 293 (353)
|+.+++.++... ++.....+|+.|+.+.+++|..++.- . .....|..+.+++|+.+++...... ..|+
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~ 426 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICR 426 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCc
Confidence 888888887643 34444567888999999988766543 1 2335688888899988888765444 5788
Q ss_pred cccEEEecCCccCchHHHHhHHH
Q 043910 294 YIRCFELSTNYKLDRNELRSILE 316 (353)
Q Consensus 294 ~l~~l~~~~c~~l~~~~~~~~~~ 316 (353)
+|+.+++-+|.............
T Consensus 427 ~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 427 NLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred ccceeeeechhhhhhhhhHHHHh
Confidence 88999998987776665544433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-10 Score=98.64 Aligned_cols=233 Identities=18% Similarity=0.153 Sum_probs=137.6
Q ss_pred HHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCC----CCCC--------CCCCCCceEEEccC
Q 043910 23 DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK----SLPS--------ITHPAKLVLLEVPH 89 (353)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~----~l~~--------~~~~~~L~~L~L~~ 89 (353)
..+..+..+++|++++|.+...... ...+.+...+ |+..+|++.-.. .+|+ ...+++|++|+||+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~--~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAAR--AIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHH--HHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4455788899999999988543321 1222333333 778888765422 2331 22456899999998
Q ss_pred CCccc-----cCCCCcCCCCccEEecCCCcCcCCCC-----------CCccccCCccCcEEeecCCCCCc----ccchhh
Q 043910 90 SNIQQ-----LGDGGQHHCKLSQIITAARNFVTKTP-----------NPSFIRSLNKLTILNLSGCSQLK----RLPAEI 149 (353)
Q Consensus 90 ~~i~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~-----------~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~ 149 (353)
|.+.. +..-+.++..|++|.+.+|..-.... ...-...-++|+++...+|..-. .+...+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 87642 22334567888888888875321110 00123455677887777743221 122334
Q ss_pred hcCCCccEEEccCccCc--c---cCccccCCCCCCEEeccCCCCCc----ccCccccCCCCCCEEEeeCccCC-----cc
Q 043910 150 LSAGNMEEMILNGTAIE--E---LPSSIECLSRLLHLGLRDCKRLK----SLPKGLCKLKSLKFLILNGCGIT-----QL 215 (353)
Q Consensus 150 ~~~~~L~~L~l~~~~i~--~---l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~i~-----~~ 215 (353)
...+.|+.+.++.|.|. . +...+.++++|+.||+..|..-. .+...+..+++|+.+++++|.+. .+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 55677888888877665 1 23456677888888887754322 13345566777888888888765 12
Q ss_pred Cccc-CCCCCCcEEEeeCCCCc-----ccchhHhhccCCceecccccc
Q 043910 216 PENL-GQLFSLEEFCLRKTKFE-----KIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 216 ~~~~-~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~ 257 (353)
...+ ...++|+.|.+.+|.++ .+...+...+.|..|++++|+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1111 23567888888888765 122234556677777777764
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.5e-09 Score=103.08 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=59.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCC--ccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSN--IQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~--i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
.+.+.+.++.+..++.....++|+.|-+..|. +..++.. +..++.|+.||+++|..+...| ..++.+-+|++|++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP--~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP--SSIGELVHLRYLDL 602 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC--hHHhhhhhhhcccc
Confidence 45555555555544444444455555555443 3333222 2335555555555554443332 34555555555555
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCc-ccCccccCCCCCCEEeccC
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~ 185 (353)
++ ..+..+|..+.++..|.+|++..+... .+|.....+.+|++|.+..
T Consensus 603 ~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 603 SD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 55 334455555555555555555554332 2222333355555555543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=96.91 Aligned_cols=87 Identities=28% Similarity=0.401 Sum_probs=45.6
Q ss_pred CCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccc
Q 043910 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSY 255 (353)
Q Consensus 178 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~ 255 (353)
++.|++++|.....+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555554444445555555555555555555554 44544555555555555555554 4555555555555555555
Q ss_pred ccccccCCC
Q 043910 256 CERLQSLPK 264 (353)
Q Consensus 256 ~~~l~~l~~ 264 (353)
|.....+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 544444443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-09 Score=90.48 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=105.2
Q ss_pred cccCCccCcEEeecCCCCCcccch----hhhcCCCccEEEccCccCccc--------------CccccCCCCCCEEeccC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPA----EILSAGNMEEMILNGTAIEEL--------------PSSIECLSRLLHLGLRD 185 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~i~~l--------------~~~~~~l~~L~~L~l~~ 185 (353)
++..+++|++|+||+|.+-...+. -+.++..|++|++.+|.+... ......-++|+++..+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 445566777777777655433322 234567777777777765411 11233446777777776
Q ss_pred CCCCcccC-----ccccCCCCCCEEEeeCccCC-----ccCcccCCCCCCcEEEeeCCCCc-----ccchhHhhccCCce
Q 043910 186 CKRLKSLP-----KGLCKLKSLKFLILNGCGIT-----QLPENLGQLFSLEEFCLRKTKFE-----KIPTNVIHLSRLHS 250 (353)
Q Consensus 186 ~~~~~~l~-----~~~~~l~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~ 250 (353)
| .+..-+ ..++..+.|+.+.+..|.|. .+...+.++++|+.||++.|.++ .+...+..+++|+.
T Consensus 167 N-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 167 N-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred c-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 4 344332 34566677888888877764 12345677888888888888775 23445566777888
Q ss_pred ecccccccc--------ccCCCCCCCcceeecCCCcCccccCccccc---cccccccEEEecCC
Q 043910 251 FCLSYCERL--------QSLPKLPCNLKELDADHCAALESLSDLFSI---SYDYYIRCFELSTN 303 (353)
Q Consensus 251 L~l~~~~~l--------~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~l~~l~~~~c 303 (353)
++++.|..- ..+....++|+.|.+.+|. ++.-...... ...+.|..|++.+|
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 888777421 2233345677777777763 3322221111 12455677777777
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.7e-08 Score=86.35 Aligned_cols=161 Identities=19% Similarity=0.305 Sum_probs=89.2
Q ss_pred cCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc-cCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 126 RSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT-AIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
..+.++++|++++| .+..+|. -..+|+.|.+++| .++.+|..+ .++|++|++++|..+..+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 34577788888876 5555552 2346888888775 455555443 25778888887766665554 3566
Q ss_pred EEeeCccCC---ccCcccCCCCCCcEEEeeCCC-Cc--ccchhHhhccCCceeccccccccccCCCCCCCcceeecCCCc
Q 043910 205 LILNGCGIT---QLPENLGQLFSLEEFCLRKTK-FE--KIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCA 278 (353)
Q Consensus 205 L~l~~~~i~---~~~~~~~~l~~L~~L~l~~~~-l~--~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~ 278 (353)
|++..+... .+|. +|+.|.+.+++ .. .++.. -.++|+.|++++|..+...+..+.+|+.|+++.+.
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEecccc
Confidence 666554432 3333 45666664322 11 11110 12468888888877554222355678888876532
Q ss_pred Cc-cccCccccccccccccEEEecCCccCchHH
Q 043910 279 AL-ESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 279 ~l-~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
.. ..++... .+.++ .+.+.+|.++....
T Consensus 189 ~~sLeI~~~s---LP~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 189 KTTWNISFEG---FPDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred cccccCcccc---ccccc-EechhhhcccCHHH
Confidence 11 1111111 12445 67788887665543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-10 Score=99.95 Aligned_cols=214 Identities=20% Similarity=0.209 Sum_probs=121.4
Q ss_pred CCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc--cchhhhcCCCccEEEccCccCc---ccCccccCC
Q 043910 101 HHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR--LPAEILSAGNMEEMILNGTAIE---ELPSSIECL 175 (353)
Q Consensus 101 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~---~l~~~~~~l 175 (353)
.|++++.+++..|..+|+..-......|++|++|+++.|..+.. +..-..++.+++.+..+||.-. .+...-..+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 34555555555544444322111223445555555555544332 1111223344444444444111 111111233
Q ss_pred CCCCEEeccCCCCCcccC--ccccCCCCCCEEEeeCcc-CC--ccCcccCCCCCCcEEEeeCCC-Cc--ccchhHhhccC
Q 043910 176 SRLLHLGLRDCKRLKSLP--KGLCKLKSLKFLILNGCG-IT--QLPENLGQLFSLEEFCLRKTK-FE--KIPTNVIHLSR 247 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~-i~--~~~~~~~~l~~L~~L~l~~~~-l~--~l~~~l~~l~~ 247 (353)
.-+..+++..|..+++.. ..-..+..|+.++.++|. ++ .+..-..++.+|+.+-+.+|+ ++ .+...-.+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 445555665665555432 122357778888888773 33 222334677899999999986 33 22223347889
Q ss_pred Cceecccccccc-----ccCCCCCCCcceeecCCCcCccccCccccc---cccccccEEEecCCccCchHHHHhH
Q 043910 248 LHSFCLSYCERL-----QSLPKLPCNLKELDADHCAALESLSDLFSI---SYDYYIRCFELSTNYKLDRNELRSI 314 (353)
Q Consensus 248 L~~L~l~~~~~l-----~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~l~~l~~~~c~~l~~~~~~~~ 314 (353)
|+.+++.+|... .++...++.|+.+.+++|..+++.+..... -....+..+++.+||.+.+...+..
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 999999887543 234456789999999999999988433222 2346678899999999999877654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-08 Score=94.22 Aligned_cols=110 Identities=24% Similarity=0.338 Sum_probs=92.6
Q ss_pred CccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEee
Q 043910 154 NMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLR 231 (353)
Q Consensus 154 ~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~ 231 (353)
.++.|+|++|.+. .+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|+++ .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778999999888 78888999999999999997766788888899999999999999988 688889999999999999
Q ss_pred CCCCc-ccchhHhhc-cCCceeccccccccccCC
Q 043910 232 KTKFE-KIPTNVIHL-SRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 232 ~~~l~-~l~~~l~~l-~~L~~L~l~~~~~l~~l~ 263 (353)
+|.+. .+|..+... .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99988 888877653 467788888887665544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.5e-10 Score=93.13 Aligned_cols=173 Identities=18% Similarity=0.144 Sum_probs=68.8
Q ss_pred ceEEEccCCCccc--cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch--hhhcCCCccE
Q 043910 82 LVLLEVPHSNIQQ--LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA--EILSAGNMEE 157 (353)
Q Consensus 82 L~~L~L~~~~i~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~ 157 (353)
||.+||++..|+. +......|.+|+.|.+.+... . .+....++.-.+|+.|+++.|+..++... -+.+++.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-d-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-D-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-C-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5555555554432 222233444555554444321 1 01111344444555555555544443221 1234455555
Q ss_pred EEccCccCc--ccCccccC-CCCCCEEeccCCCCCc---ccCccccCCCCCCEEEeeCcc-CC-ccCcccCCCCCCcEEE
Q 043910 158 MILNGTAIE--ELPSSIEC-LSRLLHLGLRDCKRLK---SLPKGLCKLKSLKFLILNGCG-IT-QLPENLGQLFSLEEFC 229 (353)
Q Consensus 158 L~l~~~~i~--~l~~~~~~-l~~L~~L~l~~~~~~~---~l~~~~~~l~~L~~L~l~~~~-i~-~~~~~~~~l~~L~~L~ 229 (353)
|+++.|... .+...+.+ -++|+.|+++||...- .+..-..++++|..||++.|. ++ .....+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 555555333 11111111 1344445555443211 111112345555555555442 22 2223344444555555
Q ss_pred eeCCCCc--ccchhHhhccCCceeccccc
Q 043910 230 LRKTKFE--KIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 230 l~~~~l~--~l~~~l~~l~~L~~L~l~~~ 256 (353)
++.|+.- ...-.+...|+|.+|++.+|
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5555421 11112334455555555554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-08 Score=95.56 Aligned_cols=168 Identities=23% Similarity=0.311 Sum_probs=74.3
Q ss_pred cceEeecccCCCCCCC-CCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPS-ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~-~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
++.+++.+|.++.+.. ...+++|+.|++++|.|..+.. ...++.|+.|++++|. +.....+..++.|+.+++++
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~----i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL----ISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc----chhccCCccchhhhcccCCc
Confidence 5555555555555554 4445555555555555554432 2333445555555542 11222333355555555555
Q ss_pred CCCCcccchh-hhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCC--CCCEEEeeCccCCcc
Q 043910 139 CSQLKRLPAE-ILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLK--SLKFLILNGCGITQL 215 (353)
Q Consensus 139 ~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~i~~~ 215 (353)
|.. ..+... ...+.+++.+.+.+|.+..+. .+..+..+..+++..+ .+..+.. +..+. +|+.+++.++++...
T Consensus 172 n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n-~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 172 NRI-VDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDN-KISKLEG-LNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred chh-hhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccc-cceeccC-cccchhHHHHHHhcccCccccc
Confidence 322 222211 234445555555555444332 1222222222233331 1221111 11222 255566666655555
Q ss_pred CcccCCCCCCcEEEeeCCCCc
Q 043910 216 PENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~l~ 236 (353)
+..+..+..+..|++.++.+.
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cccccccccccccchhhcccc
Confidence 444555555566665555543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=61.89 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=12.8
Q ss_pred ccEEEccCccCcccCc-cccCCCCCCEEeccC
Q 043910 155 MEEMILNGTAIEELPS-SIECLSRLLHLGLRD 185 (353)
Q Consensus 155 L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~ 185 (353)
|++|++++|.++.+|+ .+..+++|++|++++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~ 34 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSN 34 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccC
Confidence 4444444444444432 333344444444443
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-08 Score=92.29 Aligned_cols=188 Identities=21% Similarity=0.252 Sum_probs=127.2
Q ss_pred cceEeecccCCCCCC-CCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
++.+.++.+.++.+. ....+++|+.+++.+|.|..+......+++|++|+++++. ++ ....+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~---~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-IT---KLEGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cc---cccchhhccchhhheecc
Confidence 666667777766633 3556788888999988888876656778888888888863 33 334566677788888888
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
| .+..+.. +..+..|+.+++++|.++.+... ...+.+++.+.+.+|. +..+. .+..+..+..+++..|.++.+-.
T Consensus 150 N-~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~-~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 150 N-LISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIE-GLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred C-cchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhccc-chHHHHHHHHhhcccccceeccC
Confidence 5 4444432 44578888888888888876543 4677788888888743 33332 23334444555677776664422
Q ss_pred ccCCCCC--CcEEEeeCCCCcccchhHhhccCCceeccccc
Q 043910 218 NLGQLFS--LEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 218 ~~~~l~~--L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
+..... |+.+.+++|++..++..+..+..+..+++..+
T Consensus 226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred -cccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 222333 88999999998876556677788888888774
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-07 Score=60.21 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=34.4
Q ss_pred CCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCC
Q 043910 176 SRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTK 234 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~ 234 (353)
++|++|++++| .++.+| ..|..+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666664 455555 355666666666666666665543 45666666666666664
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-06 Score=76.24 Aligned_cols=132 Identities=25% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+.++..|++++|.++.+|. ...+|+.|.+.+|..++..+. .+ .++|++|++++|..+..+|. .|+.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hh--hhhhhheEccCccccccccc------ccceE
Confidence 4567777777776666652 234577777777766654432 11 24677777777755555553 46666
Q ss_pred EccCccCc---ccCccccCCCCCCEEeccCCCCCc--ccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCC
Q 043910 159 ILNGTAIE---ELPSSIECLSRLLHLGLRDCKRLK--SLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKT 233 (353)
Q Consensus 159 ~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~ 233 (353)
.+.++... .+|+ +|+.|.+.+++... .+|. .-.++|++|++++|....+|..+. .+|+.|+++.+
T Consensus 118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 66655433 3333 34555554322111 1111 112467777777776554444332 46777777655
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.9e-09 Score=87.36 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=126.0
Q ss_pred ccCcEEeecCCCCCc-ccchhhhcCCCccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcccC--ccccCCCCCCE
Q 043910 129 NKLTILNLSGCSQLK-RLPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLP--KGLCKLKSLKF 204 (353)
Q Consensus 129 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~ 204 (353)
..|++|+++...... .+-.-+..|.+|+.|.+.|+.+. .+-..+..-.+|+.++++.|+.++... -.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 369999999843322 22333567899999999999888 565667778899999999999888654 24678999999
Q ss_pred EEeeCccCC--ccCcccCCC-CCCcEEEeeCCC--Cc--ccchhHhhccCCceeccccccccccC--C--CCCCCcceee
Q 043910 205 LILNGCGIT--QLPENLGQL-FSLEEFCLRKTK--FE--KIPTNVIHLSRLHSFCLSYCERLQSL--P--KLPCNLKELD 273 (353)
Q Consensus 205 L~l~~~~i~--~~~~~~~~l-~~L~~L~l~~~~--l~--~l~~~l~~l~~L~~L~l~~~~~l~~l--~--~~~~~L~~L~ 273 (353)
|+++.|... .+...+.+. ++|..|+++|+. +. .+......|++|.+||++.|..++.- . --++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999765 222233333 478999999985 22 34445678999999999998777551 1 1357899999
Q ss_pred cCCCcCccccCccccccccccccEEEecCCc
Q 043910 274 ADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 274 l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
++.|-.+..-....+ ...+.+.+|++-+|-
T Consensus 345 lsRCY~i~p~~~~~l-~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLEL-NSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeee-ccCcceEEEEecccc
Confidence 999976654433222 345678899998883
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-08 Score=93.12 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=35.5
Q ss_pred hhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCcc-ccCCCCCCEEEeeCccCCccCcccCCCCCCc
Q 043910 148 EILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQLFSLE 226 (353)
Q Consensus 148 ~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~ 226 (353)
++.-++.++.|+|++|+++.+. .+..+++|++||+++ +.+..+|.. ...+. |..|.+.+|.++.+- ++.++.+|+
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhh
Confidence 3334444444455544444432 344444445555544 233433321 11222 444444444444332 234444444
Q ss_pred EEEeeCCCC
Q 043910 227 EFCLRKTKF 235 (353)
Q Consensus 227 ~L~l~~~~l 235 (353)
.||+++|-+
T Consensus 258 ~LDlsyNll 266 (1096)
T KOG1859|consen 258 GLDLSYNLL 266 (1096)
T ss_pred ccchhHhhh
Confidence 444444443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.6e-08 Score=90.89 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=70.7
Q ss_pred CCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeC
Q 043910 153 GNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRK 232 (353)
Q Consensus 153 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~ 232 (353)
.+|...+.++|.++.+..++.-++.++.|+++.|+ ..... .+..|++|++||+++|.+..+|..-..-..|..|.+++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 45667777777777666677777788888888754 33333 46677888888888888777776333223488888888
Q ss_pred CCCcccchhHhhccCCceeccccc
Q 043910 233 TKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 233 ~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
|.++++-. +.++.+|..||++.|
T Consensus 242 N~l~tL~g-ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 242 NALTTLRG-IENLKSLYGLDLSYN 264 (1096)
T ss_pred cHHHhhhh-HHhhhhhhccchhHh
Confidence 88776644 667778888888774
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-06 Score=50.94 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccc
Q 043910 201 SLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIP 239 (353)
Q Consensus 201 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~ 239 (353)
+|++|++++|+|+.+|..++.+++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666555566666666666666655443
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-07 Score=78.37 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=104.5
Q ss_pred eEeecccCCCCCCCCC----CCCCceEEEccCCCccccCC---CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEE
Q 043910 62 YLFWHGYPLKSLPSIT----HPAKLVLLEVPHSNIQQLGD---GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTIL 134 (353)
Q Consensus 62 ~L~l~~~~~~~l~~~~----~~~~L~~L~L~~~~i~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 134 (353)
-+.+.++.+....... ..+.++.+||.+|.|+.+.+ ...++|.|+.|++++|..-..+...+ .-..+|++|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~l 126 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVL 126 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEE
Confidence 4444455444333211 34666777777777665432 34466777777777654322222221 234566676
Q ss_pred eecCCCCCc-ccchhhhcCCCccEEEccCccCcccC---ccccCC-CCCCEEeccCCCCCccc--CccccCCCCCCEEEe
Q 043910 135 NLSGCSQLK-RLPAEILSAGNMEEMILNGTAIEELP---SSIECL-SRLLHLGLRDCKRLKSL--PKGLCKLKSLKFLIL 207 (353)
Q Consensus 135 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~---~~~~~l-~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l 207 (353)
-+.+..... .....+..++.+++|+++.|....+- ..+... +.++++++..|....-. -.--..++++..+-+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 666533221 12223345566666666666433210 011111 23444555444321100 000123456677777
Q ss_pred eCccCCccC--cccCCCCCCcEEEeeCCCCcccc--hhHhhccCCceeccccccccccCC
Q 043910 208 NGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIP--TNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 208 ~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
..|.+.... ......+.+--|+++.+++.++. +.+.++++|+.|.+.+++....+.
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 777766332 23445566777888888887554 367788888888888877665554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.6e-07 Score=67.24 Aligned_cols=89 Identities=15% Similarity=0.259 Sum_probs=45.7
Q ss_pred cCCCccEEEccCccCcccCcccc-CCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEE
Q 043910 151 SAGNMEEMILNGTAIEELPSSIE-CLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 229 (353)
...+|+..++++|.+..+|+.+. ..+.++++++++ +.++++|..+..++.|+.+++..|.+...|+.+..+.++..|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 33445555555555555554433 223455555554 3455555545555555555555555555555444455555555
Q ss_pred eeCCCCcccch
Q 043910 230 LRKTKFEKIPT 240 (353)
Q Consensus 230 l~~~~l~~l~~ 240 (353)
..+|....++.
T Consensus 130 s~~na~~eid~ 140 (177)
T KOG4579|consen 130 SPENARAEIDV 140 (177)
T ss_pred CCCCccccCcH
Confidence 55555444443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.2e-06 Score=79.96 Aligned_cols=150 Identities=20% Similarity=0.147 Sum_probs=87.4
Q ss_pred CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCC-cccchhhhcCCCccEEEccCccCcccCccccCCCCCCE
Q 043910 102 HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQL-KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLH 180 (353)
Q Consensus 102 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 180 (353)
-.+|+.|++++...+...-...--..+|.|+.|.+.+-... .++.....++++|+.|++++++++.+ ..++.+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 35777788877543321100112345788888888773332 22333345678888888888888877 56777888888
Q ss_pred EeccCCCCCcccC--ccccCCCCCCEEEeeCccCCccC-------cccCCCCCCcEEEeeCCCCc-ccch-hHhhccCCc
Q 043910 181 LGLRDCKRLKSLP--KGLCKLKSLKFLILNGCGITQLP-------ENLGQLFSLEEFCLRKTKFE-KIPT-NVIHLSRLH 249 (353)
Q Consensus 181 L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~~~~-------~~~~~l~~L~~L~l~~~~l~-~l~~-~l~~l~~L~ 249 (353)
|.+.+-. ...-. ..+.++++|+.||++.......+ +....++.|+.||.+++.+. .+.. .+..-++|+
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 8776522 22211 13567888888888876433222 11234678888888887765 3322 233344455
Q ss_pred eecc
Q 043910 250 SFCL 253 (353)
Q Consensus 250 ~L~l 253 (353)
.+.+
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 4443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.8e-05 Score=47.27 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=12.5
Q ss_pred ccEEEccCccCcccCccccCCCCCCEEeccC
Q 043910 155 MEEMILNGTAIEELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 155 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 185 (353)
|++|++++|.|+.+|+.+..+++|++|++++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 4444444444444443344444444444444
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.7e-06 Score=65.46 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=81.9
Q ss_pred CccEEEccCccCcccCcc---ccCCCCCCEEeccCCCCCcccCcccc-CCCCCCEEEeeCccCCccCcccCCCCCCcEEE
Q 043910 154 NMEEMILNGTAIEELPSS---IECLSRLLHLGLRDCKRLKSLPKGLC-KLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229 (353)
Q Consensus 154 ~L~~L~l~~~~i~~l~~~---~~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 229 (353)
.+..++++.|.+-.++.. +.....|+..++++ +.+..+|+.|. ..+.++.+++++|.++.+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 456677888876655544 34456677789998 56777887554 56789999999999999999999999999999
Q ss_pred eeCCCCcccchhHhhccCCceeccccc
Q 043910 230 LRKTKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 230 l~~~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
++.|.+...|.-+..+.++-.|+..++
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCC
Confidence 999999988887777888888887764
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.6e-06 Score=78.29 Aligned_cols=110 Identities=22% Similarity=0.291 Sum_probs=51.2
Q ss_pred CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC-CCCcccc----hhhhcCCCccEEEccCcc-Ccc--cCcccc
Q 043910 102 HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC-SQLKRLP----AEILSAGNMEEMILNGTA-IEE--LPSSIE 173 (353)
Q Consensus 102 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~-i~~--l~~~~~ 173 (353)
++.|+.+.+..|..++.....+....++.|+.|++++| ......+ .....+.+|+.++++++. +++ +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666666555443221234455566666666552 2222111 112234556666666654 442 211122
Q ss_pred CCCCCCEEeccCCCCCcc--cCccccCCCCCCEEEeeCcc
Q 043910 174 CLSRLLHLGLRDCKRLKS--LPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~ 211 (353)
.+++|++|.+.+|..++. +-.....+++|+.|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 355666666555554332 11223445556666666553
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.8e-05 Score=77.58 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=79.3
Q ss_pred ccCcEEeecCCCC-Ccccchhhh-cCCCccEEEccCccCc--ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 129 NKLTILNLSGCSQ-LKRLPAEIL-SAGNMEEMILNGTAIE--ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 129 ~~L~~L~l~~~~~-~~~~~~~~~-~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
.+|++|++++... ....+..++ -+|.|+.|.+.+-.+. ++.....++++|..||+++++ ++.+ .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 4788888877432 233444444 3688888888876554 344455677888888888744 4444 35677888888
Q ss_pred EEeeCccCCccC--cccCCCCCCcEEEeeCCCCcccchh-------HhhccCCceeccccc
Q 043910 205 LILNGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIPTN-------VIHLSRLHSFCLSYC 256 (353)
Q Consensus 205 L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~~~-------l~~l~~L~~L~l~~~ 256 (353)
|.+.+-.+.... ..+..+++|+.||+|.......+.. -..+|.|+.||.++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 877665555322 2356678888888887654422211 124777888887763
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=59.33 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=46.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcC-CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQH-HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
...+++++|.+..++.+..++.|..|.+.+|+|..+.+.+.. +++|..|.+.+|+ +....+...+..|++|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecC
Confidence 555666666666666666666777777777777666544433 4556666666543 33344444455555666665555
Q ss_pred C
Q 043910 139 C 139 (353)
Q Consensus 139 ~ 139 (353)
|
T Consensus 123 N 123 (233)
T KOG1644|consen 123 N 123 (233)
T ss_pred C
Confidence 4
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.2e-05 Score=63.66 Aligned_cols=132 Identities=20% Similarity=0.206 Sum_probs=77.2
Q ss_pred cccCCccCcEEeecCCCCCcccchh----hhcCCCccEEEccCccCcccC-----c---------cccCCCCCCEEeccC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAE----ILSAGNMEEMILNGTAIEELP-----S---------SIECLSRLLHLGLRD 185 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~i~~l~-----~---------~~~~l~~L~~L~l~~ 185 (353)
++.+|++|+..++|+|.+....|.. +...+.|.+|.+++|.+..+. . -...-|.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 5567777888888877665555433 345677788888777654221 1 123346677777766
Q ss_pred CCCCcccCc-----cccCCCCCCEEEeeCccCC--ccC----cccCCCCCCcEEEeeCCCCcc-----cchhHhhccCCc
Q 043910 186 CKRLKSLPK-----GLCKLKSLKFLILNGCGIT--QLP----ENLGQLFSLEEFCLRKTKFEK-----IPTNVIHLSRLH 249 (353)
Q Consensus 186 ~~~~~~l~~-----~~~~l~~L~~L~l~~~~i~--~~~----~~~~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~ 249 (353)
| .+...+. .+..-..|+.+.+..|.|. ++. ..+..+.+|+.||++.|.++. +...+...+.|+
T Consensus 167 N-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 N-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred c-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 3 3333331 2333356777777777765 111 134566778888888777651 222334455567
Q ss_pred eeccccc
Q 043910 250 SFCLSYC 256 (353)
Q Consensus 250 ~L~l~~~ 256 (353)
.|.+..|
T Consensus 246 EL~lnDC 252 (388)
T COG5238 246 ELRLNDC 252 (388)
T ss_pred hccccch
Confidence 7776665
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00034 Score=56.70 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCccEEEccCccCcccCccccC-CCCCCEEeccCCCCCcccCc--cccCCCCCCEEEeeCccCCccCc----ccCCCCC
Q 043910 152 AGNMEEMILNGTAIEELPSSIEC-LSRLLHLGLRDCKRLKSLPK--GLCKLKSLKFLILNGCGITQLPE----NLGQLFS 224 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~i~~~~~----~~~~l~~ 224 (353)
++.|.+|.+..|+|+.+.+.+.. +++|+.|.+.+|. +..+.+ -+..+++|++|.+-+|++..-+. .+-.+++
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 34444444444444443333322 2344444444422 222211 13344444444444444432211 1233445
Q ss_pred CcEEEeeC
Q 043910 225 LEEFCLRK 232 (353)
Q Consensus 225 L~~L~l~~ 232 (353)
|+.||+++
T Consensus 142 l~~LDF~k 149 (233)
T KOG1644|consen 142 LRTLDFQK 149 (233)
T ss_pred ceEeehhh
Confidence 55555443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=3.5e-05 Score=73.34 Aligned_cols=180 Identities=25% Similarity=0.236 Sum_probs=105.9
Q ss_pred cCCccCcEEeecCCCCCcc--cchhhhcCCCccEEEccCc--cCccc----CccccCCCCCCEEeccCCCCCcccC--cc
Q 043910 126 RSLNKLTILNLSGCSQLKR--LPAEILSAGNMEEMILNGT--AIEEL----PSSIECLSRLLHLGLRDCKRLKSLP--KG 195 (353)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~i~~l----~~~~~~l~~L~~L~l~~~~~~~~l~--~~ 195 (353)
..++.|+.|.+.+|..+.. +......+++|+.|+++++ .++.. ......+++|+.+++++|..+++.. ..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478888888888877665 3344567889999999873 22221 1234456889999999877555432 22
Q ss_pred ccCCCCCCEEEeeCcc-CC--ccCcccCCCCCCcEEEeeCCCCc---ccchhHhhccCCceeccccc---cccccCC---
Q 043910 196 LCKLKSLKFLILNGCG-IT--QLPENLGQLFSLEEFCLRKTKFE---KIPTNVIHLSRLHSFCLSYC---ERLQSLP--- 263 (353)
Q Consensus 196 ~~~l~~L~~L~l~~~~-i~--~~~~~~~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~---~~l~~l~--- 263 (353)
...+++|+.|.+.+|. ++ .+-.....++.|++|++++|... .+.....++++|+.+.+..+ ..++...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 2348899999988886 55 44445567788999999988753 24444556776666554433 2232211
Q ss_pred --CCC-CCcceeecCCCcCccccCccccccccccccEEEecCCccC
Q 043910 264 --KLP-CNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKL 306 (353)
Q Consensus 264 --~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l 306 (353)
... ..+..+.+.+|+.++++...... .......+.+.+|+.+
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 111 14555555555555555444333 1111113445555555
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00014 Score=62.35 Aligned_cols=204 Identities=18% Similarity=0.162 Sum_probs=125.9
Q ss_pred CceEEEccCCCccccCC---CCcCCCCccEEecCCCcCcCCCCC-CccccCCccCcEEeecCCCCCcccchhhhcCCCcc
Q 043910 81 KLVLLEVPHSNIQQLGD---GGQHHCKLSQIITAARNFVTKTPN-PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNME 156 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 156 (353)
.++.+.+.++.|....+ ....+..++.+++.+|.. .++.. .....++|.|+.|+++.|.....+........+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i-SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI-SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh-ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 45566666766654322 123467889999998742 22221 22567899999999998755444332224567899
Q ss_pred EEEccCccCc--ccCccccCCCCCCEEeccCCCCCccc---CccccCC-CCCCEEEeeCccCC---ccCcccCCCCCCcE
Q 043910 157 EMILNGTAIE--ELPSSIECLSRLLHLGLRDCKRLKSL---PKGLCKL-KSLKFLILNGCGIT---QLPENLGQLFSLEE 227 (353)
Q Consensus 157 ~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~l---~~~~~~l-~~L~~L~l~~~~i~---~~~~~~~~l~~L~~ 227 (353)
.|.+.|+.+. ........+|.++.|+++.|+ .+.+ .+..... +.++++....|... .+-......+++..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 9999998665 555567788889999888853 2211 1112222 24566666666432 11122234567888
Q ss_pred EEeeCCCCcccch--hHhhccCCceeccccccccccCC-----CCCCCcceeecCCCcCccccCccc
Q 043910 228 FCLRKTKFEKIPT--NVIHLSRLHSFCLSYCERLQSLP-----KLPCNLKELDADHCAALESLSDLF 287 (353)
Q Consensus 228 L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~l~~l~-----~~~~~L~~L~l~~c~~l~~~~~~~ 287 (353)
+-+..|++.+... ....++.+..|+++.+ .+.++. ..++.|..|.+.+.|-...+....
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e 269 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGE 269 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCc
Confidence 8888898874433 3345677777777774 333322 246888999999888777776643
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00069 Score=57.14 Aligned_cols=79 Identities=25% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCCCCCEEeccCC--CCCcccCccccCCCCCCEEEeeCccCCc---cCcccCCCCCCcEEEeeCCCCcccc----hhHhh
Q 043910 174 CLSRLLHLGLRDC--KRLKSLPKGLCKLKSLKFLILNGCGITQ---LPENLGQLFSLEEFCLRKTKFEKIP----TNVIH 244 (353)
Q Consensus 174 ~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~L~l~~~~l~~l~----~~l~~ 244 (353)
.+++|++|.++.| .....++.....+++|+++++++|++.. ++ .+..+.+|..|++.+|..+.+- ..+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3445555555544 1122222222334555555555554431 11 1333445555555555543221 12334
Q ss_pred ccCCceecc
Q 043910 245 LSRLHSFCL 253 (353)
Q Consensus 245 l~~L~~L~l 253 (353)
+++|++||-
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 555555543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00093 Score=56.75 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=25.9
Q ss_pred HHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCC
Q 043910 23 DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSL 73 (353)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l 73 (353)
.++.+|++|+.+++++|.|....+... ...+.... |.+|.+++|.+..+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L--~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEEL--GDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHH--HHHHhcCCCceeEEeecCCCCcc
Confidence 455577777777777777654332111 11111122 77777777765533
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00012 Score=62.23 Aligned_cols=98 Identities=23% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc--ccCCCCCCcEEE
Q 043910 152 AGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE--NLGQLFSLEEFC 229 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~ 229 (353)
+.+.+.|+.-||.+.++. ....|+.|++|.|+-| .++.+.. +..|++|++|.+-.|.|..+.+ .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 345666777777777662 3456777777777763 3444432 5667777777777776665543 345666777777
Q ss_pred eeCCCCc-cc-c----hhHhhccCCceec
Q 043910 230 LRKTKFE-KI-P----TNVIHLSRLHSFC 252 (353)
Q Consensus 230 l~~~~l~-~l-~----~~l~~l~~L~~L~ 252 (353)
|..|+-. .- + ..+.-+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7766543 11 1 1244566666665
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0014 Score=55.30 Aligned_cols=61 Identities=30% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCccCcEEeecCC--CCCcccchhhhcCCCccEEEccCccCcccC--ccccCCCCCCEEeccCCC
Q 043910 127 SLNKLTILNLSGC--SQLKRLPAEILSAGNMEEMILNGTAIEELP--SSIECLSRLLHLGLRDCK 187 (353)
Q Consensus 127 ~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~ 187 (353)
.+++|++|.++.| .....++.....+++|+++++++|+|..+. .....+.+|..|++..|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 4556666666665 233333333334466666666666555321 123344555566666554
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.016 Score=44.29 Aligned_cols=81 Identities=10% Similarity=0.212 Sum_probs=28.9
Q ss_pred cccCCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLK 200 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~ 200 (353)
.+..+.+|+.+.+.. ....++ ..+..+++|+.+.+.++ +..++. .+..+++++.+.+.. ....++. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence 344445555555543 122222 22444445555555443 333322 334444555555543 2222222 334455
Q ss_pred CCCEEEeeC
Q 043910 201 SLKFLILNG 209 (353)
Q Consensus 201 ~L~~L~l~~ 209 (353)
+|+.+.+..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 555555543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.00022 Score=60.67 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=39.3
Q ss_pred CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc--cccCCCCCCEE
Q 043910 104 KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS--SIECLSRLLHL 181 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L 181 (353)
+.++|+..+| ++.+......|+.|++|.|+-|++.+ +.. +..|++|++|+|..|.|..+.. .+.++++|+.|
T Consensus 20 ~vkKLNcwg~----~L~DIsic~kMp~lEVLsLSvNkIss-L~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGC----GLDDISICEKMPLLEVLSLSVNKISS-LAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCC----CccHHHHHHhcccceeEEeecccccc-chh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3444555554 22223334455556666665543322 211 4455566666666665554322 34455666666
Q ss_pred eccCCCCCc
Q 043910 182 GLRDCKRLK 190 (353)
Q Consensus 182 ~l~~~~~~~ 190 (353)
-|..|.-..
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 665544433
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.038 Score=42.10 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=10.1
Q ss_pred cCHHHHhcCCCCcEEEeee
Q 043910 20 LYSDTFTKMRKLRFLKFYN 38 (353)
Q Consensus 20 ~~~~~~~~~~~L~~L~l~~ 38 (353)
+...+|.++++|+.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~ 21 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN 21 (129)
T ss_dssp E-TTTTTT-TT--EEEETS
T ss_pred ECHHHHhCCCCCCEEEECC
Confidence 3456677777777777764
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.0067 Score=30.60 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=8.4
Q ss_pred ccEEEccCccCcccCcc
Q 043910 155 MEEMILNGTAIEELPSS 171 (353)
Q Consensus 155 L~~L~l~~~~i~~l~~~ 171 (353)
|++|++++|.++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44555555555544444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.014 Score=29.42 Aligned_cols=14 Identities=36% Similarity=0.774 Sum_probs=5.4
Q ss_pred CEEEeeCccCCccC
Q 043910 203 KFLILNGCGITQLP 216 (353)
Q Consensus 203 ~~L~l~~~~i~~~~ 216 (353)
++|++++|+++.+|
T Consensus 3 ~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 3 EYLDLSGNNLTSIP 16 (22)
T ss_dssp SEEEETSSEESEEG
T ss_pred cEEECCCCcCEeCC
Confidence 33344433333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.011 Score=48.08 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=57.0
Q ss_pred CCCcEEEeeCCCCc-ccchhHhhccCCceeccccccccc-----cCCCCCCCcceeecCCCcCccccCcccccccccccc
Q 043910 223 FSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQ-----SLPKLPCNLKELDADHCAALESLSDLFSISYDYYIR 296 (353)
Q Consensus 223 ~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~-----~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~ 296 (353)
..++.+|.+++.+. .--..+.++++++.|.+.+|..+. .+....++|+.|+|++|+.+++-..... ...++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhH
Confidence 35788888888776 444557778888888888887653 3444568899999999998888765433 2345666
Q ss_pred EEEecCCccC
Q 043910 297 CFELSTNYKL 306 (353)
Q Consensus 297 ~l~~~~c~~l 306 (353)
.|.+.+=+-.
T Consensus 180 ~L~l~~l~~v 189 (221)
T KOG3864|consen 180 RLHLYDLPYV 189 (221)
T ss_pred HHHhcCchhh
Confidence 6666554433
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.039 Score=25.79 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=4.9
Q ss_pred CccEEEccCccCcc
Q 043910 154 NMEEMILNGTAIEE 167 (353)
Q Consensus 154 ~L~~L~l~~~~i~~ 167 (353)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
|
... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.1 Score=27.37 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=15.6
Q ss_pred cccccEEEecCCccCchHHHHhHH
Q 043910 292 DYYIRCFELSTNYKLDRNELRSIL 315 (353)
Q Consensus 292 ~~~l~~l~~~~c~~l~~~~~~~~~ 315 (353)
|++|+.|++++|+.+++.....+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345667777777777776665543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.36 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=9.6
Q ss_pred CCCcEEEeeCCCCcccch
Q 043910 223 FSLEEFCLRKTKFEKIPT 240 (353)
Q Consensus 223 ~~L~~L~l~~~~l~~l~~ 240 (353)
++|+.|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555544
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.36 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=9.6
Q ss_pred CCCcEEEeeCCCCcccch
Q 043910 223 FSLEEFCLRKTKFEKIPT 240 (353)
Q Consensus 223 ~~L~~L~l~~~~l~~l~~ 240 (353)
++|+.|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555544
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.74 E-value=0.015 Score=48.55 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=56.7
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLK 203 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 203 (353)
.+..+...+.|+++.| ........+..++.+..|+++.|.+..+|..++....++.+++.. +..+..|.++++.++++
T Consensus 37 ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcc
Confidence 4555666777777763 333344445556667777777777777777666666666666655 44666776777777777
Q ss_pred EEEeeCccCC
Q 043910 204 FLILNGCGIT 213 (353)
Q Consensus 204 ~L~l~~~~i~ 213 (353)
+++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777766543
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.82 E-value=0.0088 Score=56.48 Aligned_cols=177 Identities=20% Similarity=0.206 Sum_probs=101.0
Q ss_pred cceEeecccCCCCCC------CCCCCCCceEEEccCCCcccc-----CCCCcCC-CCccEEecCCCcCcCCCC--CCccc
Q 043910 60 IRYLFWHGYPLKSLP------SITHPAKLVLLEVPHSNIQQL-----GDGGQHH-CKLSQIITAARNFVTKTP--NPSFI 125 (353)
Q Consensus 60 L~~L~l~~~~~~~l~------~~~~~~~L~~L~L~~~~i~~l-----~~~~~~~-~~L~~L~l~~~~~l~~~~--~~~~~ 125 (353)
+..+.+.+|.+..-. .......|+.|++++|.+... ....... +.++.|++..|....... ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556666777655322 122467788888888877521 1233333 556667777764322111 01134
Q ss_pred cCCccCcEEeecCCCCCcc----cchhhh----cCCCccEEEccCccCcc-----cCccccCCCC-CCEEeccCCCCCcc
Q 043910 126 RSLNKLTILNLSGCSQLKR----LPAEIL----SAGNMEEMILNGTAIEE-----LPSSIECLSR-LLHLGLRDCKRLKS 191 (353)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~i~~-----l~~~~~~l~~-L~~L~l~~~~~~~~ 191 (353)
.....++.++++.|..... ++..+. ...++++|.+++|.++. +...+...+. +..+++..|..-+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4466777777777654321 122222 35678888888887662 1123334444 55677776543322
Q ss_pred ----cCccccCC-CCCCEEEeeCccCC-----ccCcccCCCCCCcEEEeeCCCCc
Q 043910 192 ----LPKGLCKL-KSLKFLILNGCGIT-----QLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 192 ----l~~~~~~l-~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
+.+.+..+ ..++.++++.|.++ .+.+.+..++.++.+.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22334455 66788888888776 33445566778888888888764
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.81 E-value=0.71 Score=37.94 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=44.6
Q ss_pred CCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhHHHH
Q 043910 266 PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILED 317 (353)
Q Consensus 266 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~ 317 (353)
++.++.|.+.+|..+.+-......+.-++|+.|++++|+.+++..+..+.+.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 4678889999999999888777777788999999999999999988776554
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=80.13 E-value=0.93 Score=23.03 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.0
Q ss_pred CCCcEEEeeCCCCc
Q 043910 223 FSLEEFCLRKTKFE 236 (353)
Q Consensus 223 ~~L~~L~l~~~~l~ 236 (353)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666554
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 353 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 4e-07 | ||
| 4b8c_D | 727 | Nuclease Module Of The Yeast Ccr4-Not Complex Lengt | 3e-04 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 3e-04 | ||
| 3e6j_A | 229 | Crystal Structure Of Variable Lymphocyte Receptor ( | 5e-04 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
| >pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-32
Identities = 58/272 (21%), Positives = 95/272 (34%), Gaps = 37/272 (13%)
Query: 23 DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP-SITHPAK 81
+ + + + K ++D P L PL P +
Sbjct: 47 HSAWRQANSNNPQIETRTGR-ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH 105
Query: 82 LVLLEVPHSNIQQLGDG-GQ---------HHCKLSQIITAARNFVTKTPNPSFIRSLNKL 131
L + + + + +L D Q L + P+ I SLN+L
Sbjct: 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-------------PASIASLNRL 152
Query: 132 TILNLSGCSQLKRLPAEILSAG---------NMEEMILNGTAIEELPSSIECLSRLLHLG 182
L++ C +L LP + S N++ + L T I LP+SI L L L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 183 LRDCKRLKSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLR-KTKFEKIPT 240
+R+ L +L + L L+ L L GC + P G L+ L+ + +P
Sbjct: 213 IRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271
Query: 241 NVIHLSRLHSFCLSYCERLQSLPKLPCNLKEL 272
++ L++L L C L LP L L
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 15/175 (8%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHL 181
P L+ L + + L LP + +E + L + LP+SI L+RL L
Sbjct: 97 PDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 182 GLRDCKRLKSLPKGLCK---------LKSLKFLILNGCGITQLPENLGQLFSLEEFCLRK 232
+R C L LP+ L L +L+ L L GI LP ++ L +L+ +R
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN 215
Query: 233 TKFEKIPTNVIHLSRLHSFCLSYCERLQSLP----KLPCNLKELDADHCAALESL 283
+ + + HL +L L C L++ P LK L C+ L +L
Sbjct: 216 SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTL 269
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-24
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 118 KTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSR 177
T + L L L L + ++ LPA I + N++ + + + + L +I L +
Sbjct: 172 STDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230
Query: 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEFCLRK-TKF 235
L L LR C L++ P LK LIL C + LP ++ +L LE+ LR
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 236 EKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNL 269
++P+ + L + + Q P
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-23
Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 9/170 (5%)
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSR- 177
P + + + + R ++ N + G A++ +E ++
Sbjct: 26 RPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALKATADLLEDATQP 81
Query: 178 -LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236
+ L LR L P +L L+ + ++ G+ +LP+ + Q LE L +
Sbjct: 82 GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR 140
Query: 237 KIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDL 286
+P ++ L+RL + C L LP+ + L +L L
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ--GLVNLQSL 188
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 19/145 (13%), Positives = 32/145 (22%), Gaps = 29/145 (20%)
Query: 165 IEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC-------------- 210
+ S +L + L+ L + + N
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 211 ------GITQLPENLGQL--FSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSL 262
+ + L LR + P LS L + L L
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMEL 119
Query: 263 P----KLPCNLKELDADHCAALESL 283
P + L+ L L +L
Sbjct: 120 PDTMQQFA-GLETLTLARN-PLRAL 142
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 4e-17
Identities = 61/242 (25%), Positives = 93/242 (38%), Gaps = 30/242 (12%)
Query: 45 NKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCK 104
+ ++ + D + I L L SLP+ P +L LEV + + L +
Sbjct: 48 GESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLE 105
Query: 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA 164
LS N +T P + L L + G QL LP ++E+ ++
Sbjct: 106 LSIF----SNPLTHLPA-----LPSGLCKLWIFGN-QLTSLPVLP---PGLQELSVSDNQ 152
Query: 165 IEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFS 224
+ LP+ L +L + L SLP L+ L ++ + LP +L+
Sbjct: 153 LASLPALPSELCKLWAYNNQ----LTSLPMLPSGLQEL---SVSDNQLASLPTLPSELYK 205
Query: 225 LEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLS 284
L + R T +P+ L L +S RL SLP LP LKEL L SL
Sbjct: 206 LWAYNNRLTSLPALPSG---LKELI---VSGN-RLTSLPVLPSELKELMVSGN-RLTSLP 257
Query: 285 DL 286
L
Sbjct: 258 ML 259
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 38/161 (23%), Positives = 56/161 (34%), Gaps = 38/161 (23%)
Query: 128 LNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCK 187
N +LN+ L LP + + + L + D
Sbjct: 39 NNGNAVLNVGES-GLTTLPDCLPA-------------------------HITTLVIPDN- 71
Query: 188 RLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSR 247
L SLP +L++L ++G +T LP L L F T +P+ + L
Sbjct: 72 NLTSLPALPPELRTL---EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLW- 127
Query: 248 LHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFS 288
+ +L SLP LP L+EL L SL L S
Sbjct: 128 -----IFGN-QLTSLPVLPPGLQELSVSDN-QLASLPALPS 161
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 18/158 (11%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHL 181
P+ L KL N +L LPA ++E+I++G + LP S L L
Sbjct: 197 PTLPSELYKLWAYNN----RLTSLPALP---SGLKELIVSGNRLTSLPVLP---SELKEL 246
Query: 182 GLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTN 241
+ RL SLP L SL + +T+LPE+L L S L +
Sbjct: 247 MVSGN-RLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302
Query: 242 VI-HLSRLHSFC---LSYCERLQSLPKLPCNLKELDAD 275
+ ++ + + + S P+ L AD
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 197 CKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC 256
C L + G+T LP+ L + + +P L L +S
Sbjct: 37 CLNNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE---VSGN 91
Query: 257 ERLQSLPKLPCNLKELD 273
+L SLP LP L EL
Sbjct: 92 -QLTSLPVLPPGLLELS 107
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 32/245 (13%)
Query: 58 PEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVT 117
P + YL L+ LP + + + L +++V ++++++L D L + I A N +
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSL-EFIAAGNNQLE 186
Query: 118 KTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSR 177
+ P +++L LT + LK+LP ++E ++ +EELP ++ L
Sbjct: 187 ELPE---LQNLPFLTAIYADNN-SLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPF 238
Query: 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEK 237
L + + LK+LP L++L + +T LPE L L+ + +
Sbjct: 239 LTTIYADNN-LLKTLPDLPPSLEALN---VRDNYLTDLPELPQSLTFLDVSENIFSGLSE 294
Query: 238 IPTNVIHL--------------SRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESL 283
+P N+ +L L +S +L LP LP L+ L A L +
Sbjct: 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEV 352
Query: 284 SDLFS 288
+L
Sbjct: 353 PELPQ 357
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 7e-14
Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 33/221 (14%)
Query: 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN 129
L+ LP + + L + ++++++L D L + I A N + + P +++L
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKKLPDLP---LSL-ESIVAGNNILEELPE---LQNLP 237
Query: 130 KLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRL 189
LT + LK LP ++E + + + +LP + L+ L L
Sbjct: 238 FLTTIYADNN-LLKTLPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-L 292
Query: 190 KSLPKGLCKL--------------KSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKF 235
LP L L SL+ L ++ + +LP LE
Sbjct: 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHL 349
Query: 236 EKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADH 276
++P +L +LH + Y L+ P +P ++++L +
Sbjct: 350 AEVPELPQNLKQLH---VEYN-PLREFPDIPESVEDLRMNS 386
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 127 SLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDC 186
L L S C+ L LP S ++ N A+ +LP L +LG+ +
Sbjct: 89 LPPHLESLVAS-CNSLTELPELPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNN 141
Query: 187 KRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLS 246
+ L+ LP+ L LK + ++ + +LP+ L + + E++P + +L
Sbjct: 142 Q-LEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA---AGNNQLEELP-ELQNLP 195
Query: 247 RLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDL 286
L + L+ LP LP +L+ + A + LE L +L
Sbjct: 196 FLTAIYADNN-SLKKLPDLPLSLESIVAGNN-ILEELPEL 233
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 21/155 (13%)
Query: 145 LPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGL-------- 196
+ +S ++E + + + + E+P E + + ++ P G
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 197 -----CKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSF 251
C + L LN G++ LPE LE ++P L L
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVD 119
Query: 252 CLSYCERLQSLPKLPCNLKELDADHCAALESLSDL 286
+ L++L LP L+ L + LE L +L
Sbjct: 120 NNN----LKALSDLPPLLEYLGVSNN-QLEKLPEL 149
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 6e-17
Identities = 59/294 (20%), Positives = 98/294 (33%), Gaps = 35/294 (11%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
L D F L L+ + + S ++ F +R L LK +P
Sbjct: 46 TLNQDEFASFPHLEELELNENIV--------SAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97
Query: 76 --ITHPAKLVLLEVPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLT 132
T + L L++ + I L D Q L + + N + + +F LN L
Sbjct: 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNL-KSLEVGDNDLVYISHRAF-SGLNSLE 155
Query: 133 ILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLK 190
L L C L +P E LS + + L I + + L RL L + L
Sbjct: 156 QLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 191 SLPKGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNV-IHLSRL 248
++ +L L + C +T +P + L L L I ++ L RL
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 249 HSFCLSYCERLQSLPK-----LPCNLKELDADHCA-------ALESLSDLFSIS 290
L +L + L L+ L+ S+ +L ++
Sbjct: 275 QEIQLVGG-QLAVVEPYAFRGLN-YLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 38/176 (21%), Positives = 61/176 (34%), Gaps = 35/176 (19%)
Query: 160 LNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN 218
+ +P I + L L R+K+L + L+ L LN ++ +
Sbjct: 18 CHRKRFVAVPEGI--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPG 74
Query: 219 -LGQLFSLEEFCLRKTKFEKIPTNV-IHLSRLHSFCLSYCERLQSLP-----KLPCNLKE 271
LF+L LR + + IP V LS L +S ++ L L NLK
Sbjct: 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLY-NLKS 132
Query: 272 LDADH-------CAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDALQ 320
L+ A L+ L ++ L++ L SI +AL
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLT---------------LEKCNLTSIPTEALS 173
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 3e-16
Identities = 42/296 (14%), Positives = 90/296 (30%), Gaps = 38/296 (12%)
Query: 9 CLDMSKVEEIHLYS--------DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEI 60
+ +V + L D ++ +L+ L F S + + + P++
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR---LFGDEELTPDM 375
Query: 61 RYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKT 119
H + + + +L L ++ I + + K I+ +
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP--IKKDSRISLKDTQIGNL 433
Query: 120 PN-----PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIEC 174
N I+ L KL I+ + + + E S
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDW---EDANSDYAKQYENEELSWSN 489
Query: 175 LSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG----------CGITQLPENLGQLFS 224
L L + L +C + LP L L L+ L + T+L ++
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549
Query: 225 LEEFCLRKTKFEKIPTNVI--HLSRLHSFCLSYCERLQSLPKLPC--NLKELDADH 276
++ F + E+ P + + +L + +++ L L +L D+
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDY 604
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 8e-12
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 12/146 (8%)
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAG--NMEEMILNGTAIEELPSSIECLS 176
P ++ LT ++L +L L + + + M ++ P+ S
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS 776
Query: 177 RLLHLGLR------DCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCL 230
+L G+R + L+ P G+ SL L + I ++ E L L +
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP--QLYILDI 834
Query: 231 RKTKFEKIP-TNVIHLSRLHSFCLSY 255
I T+V + L Y
Sbjct: 835 ADNPNISIDVTSVCPYIEAGMYVLLY 860
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 5e-09
Identities = 26/196 (13%), Positives = 54/196 (27%), Gaps = 32/196 (16%)
Query: 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIEC--------- 174
+ + ++T L+L+G R+P I ++ + +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 175 ----------------------LSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGI 212
LS LL + +K + K + I
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 213 TQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKEL 272
T + + + +L L+ + F V + Y S L +L ++
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDV 496
Query: 273 DADHCAALESLSDLFS 288
+ +C + L D
Sbjct: 497 ELYNCPNMTQLPDFLY 512
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 45/363 (12%), Positives = 89/363 (24%), Gaps = 63/363 (17%)
Query: 9 CLDMSKVEEIHLYS--------DTFTKMRKLRFLKF-YNSSINGENKCKVSNIQDPVFPE 59
+V + L D ++ +L L + E I + E
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD--GGQHHCKLSQIITAARNFVT 117
+ Y + L++ ++ Q I N +T
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 118 KTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSR 177
+ L KL + + E N E T + L
Sbjct: 197 F--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKD 250
Query: 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN------------------- 218
L + + +C L LP L L ++ + + +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310
Query: 219 ---------------LGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP 263
L ++ L + E +L S L+Y ++ +P
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIP 369
Query: 264 K----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDAL 319
++ L H L+ + ++F +S NE+ S+
Sbjct: 370 ANFCGFTEQVENLSFAHN-KLKYIPNIFDAK-----SVSVMSAID-FSYNEIGSVDGKNF 422
Query: 320 QKI 322
+
Sbjct: 423 DPL 425
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 34/214 (15%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILS-AGNMEEMILNGTAIEELP--------SSI 172
++ +NLS Q+ + P E+ S + + L G + E+P +
Sbjct: 426 DPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 173 ECLSRLLHLGLRDCKRLKSLPK--GLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCL 230
+ L + LR K L L L L + L+ ++ P +L+ F +
Sbjct: 485 KNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543
Query: 231 RKTK-------FEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPC-NLKELDADHCAALES 282
R + + P + L + ++ + + N+ LD
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKITPNISVLD--------- 593
Query: 283 LSD--LFSISYDYYIRCFELSTNYKLDRNELRSI 314
+ D SI Y E L ++ + I
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYM-LFYDKTQDI 626
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 17/229 (7%)
Query: 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN 129
L +P P+ L + +NIQ + H +++ RN + + +F L
Sbjct: 66 LSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF-NGLA 123
Query: 130 KLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCK 187
L L L L +P+ + E+ L IE +PS + L+ L L + K
Sbjct: 124 SLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182
Query: 188 RLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVI-HL 245
+L+ + +G L +LK+L L C I +P L L LEE + F +I L
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 246 SRLHSFCLSYCERLQSLPK-----LPCNLKELDADHCAALESLS-DLFS 288
S L + ++ + + L +L EL+ H L SL DLF+
Sbjct: 242 SSLKKLWVMNS-QVSLIERNAFDGLA-SLVELNLAHN-NLSSLPHDLFT 287
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 52/326 (15%), Positives = 107/326 (32%), Gaps = 25/326 (7%)
Query: 6 EGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFW 65
E +S V + L + + SS + + S + D F E+ L
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248
Query: 66 HGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFI 125
+ L + L + S + + G+ + + + ++ + +
Sbjct: 249 YILELSEV-EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY- 306
Query: 126 RSLNKLTILNLSGCSQLKRLPAEILS-AGNMEEMILNGTAIEEL----PSSIECLSRLLH 180
L K+ + + S++ +P ++E + L+ + E + L
Sbjct: 307 SLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365
Query: 181 LGLRDCKRLKSLPKG---LCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEK 237
L L L+S+ K L LK+L L ++ +P++ + L T
Sbjct: 366 LVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424
Query: 238 IPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRC 297
+ T + L +S L S L+EL L L S +
Sbjct: 425 VKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQELYISRN----KLKTLPDASLFPVLLV 477
Query: 298 FELSTNYKLDRNELRSILEDALQKIQ 323
++S RN+L+S+ + ++
Sbjct: 478 MKIS------RNQLKSVPDGIFDRLT 497
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 23/197 (11%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSS- 171
N +T + R+ L +L L ++ + + + G++E + L+ + L SS
Sbjct: 36 NKITYIGHGDL-RACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93
Query: 172 IECLSRLLHLGLRDCKRLKSLPKGLC--KLKSLKFLIL-NGCGITQLPEN-LGQLFSLEE 227
LS L +L L ++L L +L+ L + N +++ L SL E
Sbjct: 94 FGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152
Query: 228 FCLRKTKFEKIPTNVI-----------HLSRLHSFCLSYCERLQSLPKLP---CNLKELD 273
++ + + HLS + + L S+ L NL
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212
Query: 274 ADHCAALESLSDLFSIS 290
E S + ++
Sbjct: 213 FSPLPVDEVSSPMKKLA 229
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 44/289 (15%), Positives = 93/289 (32%), Gaps = 22/289 (7%)
Query: 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWH 66
LD+S + ++ L+ L + +++ I+ F + +L
Sbjct: 31 LDLSFNKITYIGHGDLRACANLQVLILKS--------SRINTIEGDAFYSLGSLEHLDLS 82
Query: 67 GYPLKSLPS--ITHPAKLVLLEVPHSNIQQLGDGG--QHHCKLSQIITAARNFVTKTPNP 122
L SL S + L L + + Q LG + L + ++
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 123 SFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSI-ECLSRLLH 180
F L L L + L+ ++ L + ++ + L+ + L + LS + +
Sbjct: 143 DF-AGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIP 239
L LRD + L + + + L + +L L + L ++ E
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260
Query: 240 TNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFS 288
+ L + L + + ++ L LS ++S
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETV--TIRRLHIPQFYLFYDLSTVYS 307
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 37/300 (12%), Positives = 86/300 (28%), Gaps = 26/300 (8%)
Query: 1 GTEEIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSING--------------ENK 46
G ++ ++ + F + + + SI +
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR 316
Query: 47 CKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLS 106
C++ P ++ L L L++ + + G +
Sbjct: 317 CQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 107 QIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAG--NMEEMILNGTA 164
+ +F + L +L L+ S LKR+ + + ++ T
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 165 IEELPSSI-ECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN-LGQ 221
+ I L+ L L + + +L FL L+ C + Q+
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 222 LFSLEEFCLRKTKFEKIPTNVI-HLSRLHSFCLSYCERLQSLP----KLPCNLKELDADH 276
L L+ + + ++ L L + S+ R+++ P +L + +
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 44/282 (15%), Positives = 88/282 (31%), Gaps = 33/282 (11%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLP- 74
L S +F+ +L++L C++ I+D + + L G P++S
Sbjct: 46 ILKSYSFSNFSELQWLDLSR--------CEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97
Query: 75 -SITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTI 133
S + L L + + L + + A NF+ P++ +L L
Sbjct: 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 134 LNLSGCSQLKRLPAEILSA-----GNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKR 188
++LS ++ + L + ++ I+ + +L L LR
Sbjct: 158 VDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216
Query: 189 LKSLPKGLCK-LKSLKFLILNGCGITQLP----------ENLGQLFSLEEFCLRKTKFEK 237
++ K + L L L E L + E F
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276
Query: 238 IPTNVIHLSRLHSFCLSYCERLQSLPKLP--CNLKELDADHC 277
L+ + + L+ ++ L +P + L C
Sbjct: 277 DIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRC 317
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 33/245 (13%)
Query: 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAE 148
++N H ++ A + + K L++ C QLK+ P
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK---HFKWQSLSIIRC-QLKQFPTL 325
Query: 149 ILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG---LCKLKSLKFL 205
L ++ + L + L L +L L L SL+ L
Sbjct: 326 DLP--FLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL 381
Query: 206 ILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVI--HLSRLHSFCLSYCERLQSLP 263
L+ G + N L L+ + + +++ L +L +SY +
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDF 440
Query: 264 -----KLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYK---LDRNELRSIL 315
L +L L + ++ F +TN L + +L I
Sbjct: 441 DGIFLGLT-SLNTLKMAGNSFKDNTLSNV----------FANTTNLTFLDLSKCQLEQIS 489
Query: 316 EDALQ 320
Sbjct: 490 WGVFD 494
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 36/175 (20%), Positives = 62/175 (35%), Gaps = 36/175 (20%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIE 173
N + + SF + ++L L+LS C +++ + +
Sbjct: 42 NPLKILKSYSF-SNFSELQWLDLSRC-EIETIE----------------------DKAWH 77
Query: 174 CLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLR 231
L L +L L ++S G L SL+ L+ + L +GQL +L++ +
Sbjct: 78 GLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 232 KTKFE--KIPTNVIHLSRLHSFCLSYC-------ERLQSLPKLPCNLKELDADHC 277
K+P +L+ L LSY LQ L + P LD
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 7e-12
Identities = 40/265 (15%), Positives = 76/265 (28%), Gaps = 58/265 (21%)
Query: 20 LYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHP 79
L F K+ +L L + N S+ +
Sbjct: 43 LPHGVFDKLTQLTKLSLSS------NGLSFKGCCSQSD-------------FGTTSLKY- 82
Query: 80 AKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139
L++ + + + +L + + + + + S SL L L++S
Sbjct: 83 -----LDLSFNGVITMSSNFLGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG-LCK 198
+ I + LS L L + ++ +
Sbjct: 137 -HTRVAFNGIFNG----------------------LSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 199 LKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVI-HLSRLHSFCLSYC 256
L++L FL L+ C + QL L SL+ + F + T L+ L S
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 257 ERLQSLPK-----LPCNLKELDADH 276
+ + K P +L L+
Sbjct: 234 -HIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 24/200 (12%)
Query: 132 TILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCK-RL 189
T + + L +P I S + + L ++ LP + + L++L L L
Sbjct: 10 TEIRCNSKG-LTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 190 KSLPKG-LCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVI--HLS 246
K SLK+L L+ G+ + N L LE + + +++ + L
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 247 RLHSFCLSYCERLQSLPK-----LPCNLKELDADHCAALESL-SDLFSISYDYYIRCFEL 300
L +S+ + L +L+ L + E+ D+F+ L
Sbjct: 127 NLIYLDISHT-HTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFT-------ELRNL 177
Query: 301 STNYKLDRNELRSILEDALQ 320
+ L + +L + A
Sbjct: 178 TFLD-LSQCQLEQLSPTAFN 196
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 55/206 (26%)
Query: 17 EIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSI 76
+ S F + +L L F +S++ + VF SL ++
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLK-------QMSEFSVF-------------LSLRNL 128
Query: 77 THPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136
+ L + H N F L+ L +L +
Sbjct: 129 IY---LDI----------------SHTHTRVA-----------FNGIF-NGLSSLEVLKM 157
Query: 137 SGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPK 194
+G S + +I + N+ + L+ +E+L + LS L L + SL
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT 216
Query: 195 G-LCKLKSLKFLILNGCGITQLPENL 219
L SL+ L + I +
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQE 242
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 1e-11
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 166 EELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSL 225
+ S+ + + G + + L + C + L LN ++ LP+NL +
Sbjct: 27 ADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLSSLPDNLPP--QI 82
Query: 226 EEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSD 285
+ + +P L L RL +LP+LP +LK LD D+ L L +
Sbjct: 83 TVLEITQNALISLPELPASLEYLD---ACDN-RLSTLPELPASLKHLDVDNN-QLTMLPE 137
Query: 286 LFS 288
L +
Sbjct: 138 LPA 140
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 4e-11
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 20/162 (12%)
Query: 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN 129
L +LP PA L L+V ++ + L + ++ A N +T P
Sbjct: 112 LSTLPE--LPASLKHLDVDNNQLTMLPELPALLEYIN----ADNNQLTMLPE-----LPT 160
Query: 130 KLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRL----LHLGLRD 185
L +L++ QL LP ++E + ++ +E LP+ + R+
Sbjct: 161 SLEVLSVRNN-QLTFLPELP---ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216
Query: 186 CKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEE 227
R+ +P+ + L +IL ++ + +
Sbjct: 217 N-RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 30/170 (17%), Positives = 67/170 (39%), Gaps = 11/170 (6%)
Query: 121 NPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLH 180
+ I L L LNL+G Q+ + + + + + + I ++ + ++ L+ L
Sbjct: 58 SIQGIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRE 114
Query: 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPT 240
L L + + + L L + L L L + L + ++K + +
Sbjct: 115 LYLNEDN-ISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT- 171
Query: 241 NVIHLSRLHSFCLSYC--ERLQSLPKLPCNLKELDADHC--AALESLSDL 286
+ +L+ L+S L+Y E + L L +L A + ++++
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISPLASLT-SLHYFTAYVNQITDITPVANM 220
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 48/284 (16%), Positives = 108/284 (38%), Gaps = 30/284 (10%)
Query: 3 EEIEGICLDMSKVEEIHLYS------DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPV 56
I+GI ++ +E ++L + + KL L + I +S +Q+
Sbjct: 57 ASIQGIE-YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-----DISALQN-- 108
Query: 57 FPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFV 116
+R L+ + + + + + K+ L + ++ + L +T + V
Sbjct: 109 LTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGL-NYLTVTESKV 167
Query: 117 TKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLS 176
I +L L L+L+ Q++ + + S ++ I ++ + ++
Sbjct: 168 KDVTP---IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQITDITP-VANMT 221
Query: 177 RLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236
RL L + + ++ L L L L +L + I+ + + L L+ + +
Sbjct: 222 RLNSLKIGNN-KITDLS-PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQIS 278
Query: 237 KIPTNVIHLSRLHSFCLSYC----ERLQSLPKLPCNLKELDADH 276
I + +LS+L+S L+ E ++ + L NL L
Sbjct: 279 DIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQ 320
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 17/218 (7%)
Query: 70 LKSLPS-ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSL 128
L+++P I PA + + + I + C+ I+ N + + +F L
Sbjct: 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGL 79
Query: 129 NKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDC 186
L L+LS +QL+ + G + + L+ ++EL + L+ L +L L+D
Sbjct: 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Query: 187 KRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVI- 243
L++LP L +L L L+G I+ +PE L SL+ L + + + +
Sbjct: 140 -ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 244 HLSRLHSFCLSYCERLQSLPK-----LPCNLKELDADH 276
L RL + L L +LP L L+ L +
Sbjct: 199 DLGRLMTLYLFAN-NLSALPTEALAPLR-ALQYLRLND 234
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 35/196 (17%)
Query: 131 LTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKR 188
+ L G +++ +PA A N+ + L+ + + ++ L+ L L L D +
Sbjct: 34 SQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 189 LKSLPKG-LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNV-IHL 245
L+S+ L L L L+ CG+ +L L +L+ L+ + +P + L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 246 SRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYK 305
L L R+ S+P+ A L L +
Sbjct: 153 GNLTHLFLHG-NRISSVPE-------------RAFRGLHSLDRLL--------------- 183
Query: 306 LDRNELRSILEDALQK 321
L +N + + A +
Sbjct: 184 LHQNRVAHVHPHAFRD 199
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 9e-11
Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 15/180 (8%)
Query: 121 NPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLH 180
+ LN + + + +K + I N+ ++ LNG + ++ + L L
Sbjct: 35 DAVTQNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGW 91
Query: 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPT 240
L L + K +K L L LK LK L L GI+ + L L LE L K I T
Sbjct: 92 LFLDENK-IKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-T 147
Query: 241 NVIHLSRLHSFCLSYC--ERLQSLPKLPCNLKELDADHC-----AALESLSDLFSISYDY 293
+ L++L + L + L L L+ L AL L +L +
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHISDLRALAGLKNLDVLELFS 206
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 16/221 (7%)
Query: 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN 129
L + + L L++ ++ +Q+L G + + + AA N +++
Sbjct: 70 LYETLDLESLSTLRTLDLNNNYVQELLVGPS----I-ETLHAANNNISRVSCSRG----Q 120
Query: 130 KLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELP--SSIECLSRLLHLGLRDC 186
+ L+ ++ L ++ + L I+ + L HL L+
Sbjct: 121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 187 KRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLS 246
+ + + LK L L+ + + + LR K I +
Sbjct: 180 -FIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237
Query: 247 RLHSFCLSYCE-RLQSLPKLPCNLKELDADHCAALESLSDL 286
L F L +L + + ++ L+
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 18/162 (11%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELP-SSIECLSRLL 179
++ N+ I ++ LK+ A + + N++E+ L+G + ++ + + ++L
Sbjct: 3 HEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 180 HLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIP 239
L L L L L +L+ L LN + +L S+E ++
Sbjct: 62 LLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVS 115
Query: 240 TNVIHLSRLHSFCLSYCERLQSLP-----KLPCNLKELDADH 276
+ + L+ ++ L ++ LD
Sbjct: 116 CSR--GQGKKNIYLANN-KITMLRDLDEGCRS-RVQYLDLKL 153
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 164 AIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCK-LKSLKFLILNGCGITQLPEN-LGQ 221
AI E+ + +R + D LK L + ++K L L+G ++Q+ L
Sbjct: 1 AIHEIKQN---GNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Query: 222 LFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADH 276
LE L + ++ LS L + L+ +Q L P +++ L A +
Sbjct: 57 FTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLVGP-SIETLHAAN 108
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 49/276 (17%), Positives = 96/276 (34%), Gaps = 39/276 (14%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITH 78
L ++ L +L +++ + I ++ L H + +T
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTL--------TEIDVSHNTQLTELDCHLNKKITKLDVTP 168
Query: 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTP--NPSFIRSL----NKLT 132
+L L+ + I +L KL + N +TK + L NKLT
Sbjct: 169 QTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT 225
Query: 133 ILNLSGCSQLKRL----------PAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLG 182
++++ +QL LS + + T + E+ + ++L++
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELDVSTLS--KLTTLHCIQTDLLEIDLTH--NTQLIYFQ 281
Query: 183 LRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNV 242
C+++K L + L L GIT+L L Q L L T+ ++ V
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--V 335
Query: 243 IHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCA 278
H ++L S +Q + + L+ + A
Sbjct: 336 SHNTKLKSLSCVNA-HIQDFSSV-GKIPALNNNFEA 369
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 31/168 (18%)
Query: 127 SLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDC 186
+ N +T L+LS + L L + + L + L++L +L
Sbjct: 72 TSNNITTLDLSQNTNLTYL-------------ACDSNKLTNLD--VTPLTKLTYLNCDTN 116
Query: 187 KRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLS 246
K L L + + L +L +T++ + L E K +V +
Sbjct: 117 K-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQT 170
Query: 247 RLHSFCLSYC-------ERLQSLPKLPC---NLKELDADHCAALESLS 284
+L + S+ + + L +L C N+ +LD + L L
Sbjct: 171 QLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLD 218
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 18/242 (7%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
L D F ++ L L N+ I S I + F +++ L+ L +P
Sbjct: 68 ELRKDDFKGLQHLYALVLVNNKI--------SKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
Query: 76 ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135
P+ LV L + + I+++ G + I N + + KL L
Sbjct: 120 NL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 136 LSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK 194
+S +L +P ++ + E+ L+ I+ + + S+L LGL + ++ +
Sbjct: 179 ISEA-KLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIEN 234
Query: 195 GLCK-LKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCL 253
G L +L+ L L+ ++++P L L L+ L K+ N
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 254 SY 255
Y
Sbjct: 295 YY 296
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 13/173 (7%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIE-ELPSS 171
+ + + S + L LN+S + ++E + L+ +I
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 172 IEC---LSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEE 227
L HL + K + + + +L+FL ++ + +P LG +L+
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227
Query: 228 FCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQ-SLPKLPC-NLKELDADHC 277
+ K + + L +S + +P LP +L+ L
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPLPLKSLQYLSLAEN 279
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE-ELPSSIEC-LSRLL 179
I + +L +LN+S + +P L +++ + L E+P + L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 180 HLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLP-ENLGQLFSLEEFCLRKTKFE- 236
L L ++P L+ L L+ + +LP + L ++ L+ L +F
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 237 KIPTNVIHLS-RLHSFCLSYC 256
++P ++ +LS L + LS
Sbjct: 358 ELPESLTNLSASLLTLDLSSN 378
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 120 PNPSFIRSLNKLTILNLSGCSQLK-RLPAEILSAGNMEEMILNGTAIE-ELPSSIECLSR 177
N L L L ++P + + + + L+ + +PSS+ LS+
Sbjct: 385 LPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 178 LLHLGLRDCKRLK-SLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKF 235
L L L L+ +P+ L +K+L+ LIL+ +T ++P L +L L +
Sbjct: 444 LRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 236 E-KIPTNVIHLSRLHSFCLSYCERLQ-SLPKLPCNLKEL 272
+IP + L L LS ++P + + L
Sbjct: 503 TGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSL 540
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIE-ELPSSI-ECLSRL 178
P F S + L L LS + LP + L ++ + L+ ELP S+ + L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 179 LHLGLRDCKRLKSLPKGLCK--LKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKF 235
L L L + LC+ +L+ L L G T ++P L L L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 236 E-KIPTNVIHLSRLHSFCLSYCERLQ-SLPKLPCNLKEL 272
IP+++ LS+L L L+ +P+ +K L
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTL 468
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 9/138 (6%)
Query: 122 PSFIRSLNKLTILNLSGCSQLK-RLPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLL 179
P + + L L L L +P+ + + N+ + L+ + E+P I L L
Sbjct: 459 PQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 180 HLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-K 237
L L + ++P L +SL +L LN +P + + + K
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGK 573
Query: 238 IPTNVIHLSRLHSFCLSY 255
+ + +
Sbjct: 574 RYVYIKNDGMKKECHGAG 591
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 14/164 (8%)
Query: 127 SLNKLTILNLSGCS---QLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183
+K+T ++LS + + +LS +E + L+ + I S +C + L L L
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107
Query: 184 RDCKRLKSLP--KGLCKLKSLKFLILNGCGITQL--PENLGQLFSLEEFCLRKTKFE-KI 238
+ L LKFL ++ + +L SLE L
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 239 PTNVI---HLSRLHSFCLSYCERLQSLP--KLPCNLKELDADHC 277
+ L +S + + + NL+ LD
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-NLEFLDVSSN 210
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 6e-10
Identities = 48/287 (16%), Positives = 101/287 (35%), Gaps = 33/287 (11%)
Query: 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138
P L++ + ++ LG Q++ +R + + ++ +SL+ L+ L L+G
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTG 85
Query: 139 CSQLKRLPAEILSA-GNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPKG- 195
+ ++ L S ++++++ T + L + I L L L + ++S
Sbjct: 86 -NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPE 143
Query: 196 -LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFC----LRKTKFEKIPTNVIHLSRLH 249
L +L+ L L+ I + L L + L I RLH
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203
Query: 250 SFCLSYCERLQSLPKLPC--------------------NLKELDADHCAALESLSDL-FS 288
L ++ K NL++ D L +L+ F
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 289 ISYDYYIRCFELSTNYKLDRNELRSILEDALQKIQDMASTTRWKQLY 335
++Y Y + L S++ +++++D + W+ L
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 8e-09
Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 40/253 (15%)
Query: 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVL 84
F+ + L+ N ++ L + + S L
Sbjct: 300 FSYNFGWQHLELVNCKFG--------QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 85 LEVPHSNIQQLGDGGQHHCKLSQI---------ITA----------------ARNFVTKT 119
L++ + + G Q + + + + + +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 120 PNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEE--LPSSIECLS 176
S SL L L++S + I + ++E + + G + +E LP L
Sbjct: 412 SEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 177 RLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTK 234
L L L C+ L+ L L SL+ L + + +P+ +L SL++ L
Sbjct: 471 NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Query: 235 FEKIPTNVIHLSR 247
++ + +LSR
Sbjct: 530 WDCSCPRIDYLSR 542
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-07
Identities = 31/268 (11%), Positives = 73/268 (27%), Gaps = 36/268 (13%)
Query: 18 IHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSIT 77
+++ + L + E + + L + L L
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGN--LEKFDKSALEGLCNLTIEEFRLAYLDYYL 271
Query: 78 HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137
+ + + + + ++ + S+ L ++N
Sbjct: 272 DDIIDL-----FNCLTNVSSFSLVSVTIERV-----------KDFSYNFGWQHLELVNCK 315
Query: 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCK--RLKSLPKG 195
+ P L +++ + S ++ L L L L +
Sbjct: 316 ----FGQFPT--LKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQS 368
Query: 196 LCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVI--HLSRLHSFCL 253
SLK+L L+ G+ + N L LE + + +++ + L L +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 254 SYCERLQSLP-----KLPCNLKELDADH 276
S+ + L +L+ L
Sbjct: 429 SHT-HTRVAFNGIFNGLS-SLEVLKMAG 454
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 45/280 (16%), Positives = 91/280 (32%), Gaps = 33/280 (11%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
+ + + L L + I ++ F ++ L L SL +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPI--------QSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 76 --ITHPAKLVLLEVPHSNIQQLGDGGQ-HHCKLSQIITAARNFVTKTPNPSFIRSLNKLT 132
I H L L V H+ IQ + + + + N + R L+++
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMP 176
Query: 133 I----LNLSGCSQLKRLPAEILSAGNMEEMIL--NGTAIEELPSSIECLSRLLHLGL--- 183
+ L+LS + + + ++ L N ++ + + I+ L+ L L
Sbjct: 177 LLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 184 --RDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQLF----SLEEFCLRKTKFE 236
R+ L+ K L L +L + +++ LF ++ F L E
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 237 KIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADH 276
++ + + L C+ Q +LK L
Sbjct: 296 RVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-10
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 11/168 (6%)
Query: 121 NPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLH 180
+ L+ +T L+ G + + + N+ + L I +L + ++ L+++
Sbjct: 33 DTVTQADLDGITTLSAFGT-GVTTIEG-VQYLNNLIGLELKDNQITDL-APLKNLTKITE 89
Query: 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPT 240
L L LK++ + L+S+K L L IT + L L +L+ L + I
Sbjct: 90 LELSGNP-LKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNIS- 145
Query: 241 NVIHLSRLHSFCLSYC--ERLQSLPKLPCNLKELDADHCAALESLSDL 286
+ L+ L + L L L L L AD + +S L
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANLS-KLTTLKADDN-KISDISPL 191
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 7e-10
Identities = 50/267 (18%), Positives = 85/267 (31%), Gaps = 28/267 (10%)
Query: 47 CKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQ------LGDGGQ 100
++ + V + W ++ PS L + Q G Q
Sbjct: 269 SRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQ 328
Query: 101 HHCKLS--QIITAARNFVTKTPNPSFIRSLNKLTILN--LSGCSQLKRLPAEILSAGNME 156
C L + R+ T S+ K T+L L C +L+ L E + +
Sbjct: 329 KECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQEL--EPENKWCLL 386
Query: 157 EMILNGTAIEELPSSIECLSRLLHLGLRDCKR-----------LKSLPKGLCKLKSLKFL 205
+IL A++ L E L L D R L + ++ L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446
Query: 206 ILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC--ERLQSLP 263
L +T L +L QL + L + +P + L L S E + +
Sbjct: 447 HLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 505
Query: 264 KLPCNLKELDADHCAALESLSDLFSIS 290
LP L+EL + L+ + + +
Sbjct: 506 NLP-RLQELLLCNN-RLQQSAAIQPLV 530
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 7e-08
Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 12/154 (7%)
Query: 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCS--------QLKRLPAEILSAGNME 156
L II R ++ + L ++ + L + ++
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444
Query: 157 EMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLP 216
+ L + L +E L + HL L RL++LP L L+ L+ L + + +
Sbjct: 445 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD 502
Query: 217 ENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHS 250
+ L L+E L + ++ + L
Sbjct: 503 -GVANLPRLQELLLCNNRLQQSA-AIQPLVSCPR 534
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 20/218 (9%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELP-SS 171
N + + P +F ++LT L++ + +L E+ ++ + L + +L +
Sbjct: 35 NQLRRLPAANF-TRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92
Query: 172 IECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFC 229
+ L L L ++ + K K+L L L+ G++ QL +L+E
Sbjct: 93 FAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151
Query: 230 LRKTKFEKIPTNVI---HLSRLHSFCLSYCERLQSLPKLP----CNLKELDADHCAALES 282
L K + + + + S L LS +++ L L ++
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNV----Q 206
Query: 283 LSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDALQ 320
L + + + L ++L +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLS-LSNSQLSTTSNTTFL 243
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 43/290 (14%), Positives = 94/290 (32%), Gaps = 42/290 (14%)
Query: 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYP 69
+ HL+S + + +R+L S Q + + +
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT----------KQSISLASLPKI--DDFS 324
Query: 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFI---R 126
+ L + H L + ++I + + ++ + +F + +
Sbjct: 325 FQWLKCLEH------LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378
Query: 127 SLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEEL--PSSIECLSRLLHLGL 183
+ + L ILNL+ ++ ++ ++ S G++E + L I + L + + L
Sbjct: 379 AHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 184 RDCKRLKSLPKGLCKLKSLKFLILNGC---GITQLPENLGQLFSLEEFCLRKTKFEKIPT 240
K L+ + SL+ L+L + P L +L L I
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497
Query: 241 NVIH-LSRLHSFCLSYCERLQSLPKLPC------------NLKELDADHC 277
+++ L +L L + L L K +L L+ +
Sbjct: 498 DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 40/261 (15%), Positives = 82/261 (31%), Gaps = 33/261 (12%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
+ ++ F K + L L ++ + S+ + ++ L +++L S
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGL--------SSTKLGTQVQLENLQELLLSNNKIQALKS 162
Query: 76 IT----HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN-- 129
+ L LE+ + I++ G H + + + L
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222
Query: 130 KLTILNLSGCSQLKRLPAEI---LSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRD 185
+ L+LS QL L N+ + L+ + + S L +L + L
Sbjct: 223 SIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 186 CKRLKSLPKGLCKLKSLKFLILNG---------CGITQLPEN-LGQLFSLEEFCLRKTKF 235
L L ++++L L + ++ + L LE +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 236 EKIPTNVI-HLSRLHSFCLSY 255
I +N+ L L LS
Sbjct: 342 PGIKSNMFTGLINLKYLSLSN 362
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 10/111 (9%)
Query: 173 ECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLR 231
+C +L +P L ++ L L + +L N + L +
Sbjct: 1 KCTVSHEVADCSHL-KLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57
Query: 232 KTKFEKIPTNVI-HLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHC 277
K+ + L L L + L L NL EL
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN 107
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 8e-10
Identities = 45/263 (17%), Positives = 77/263 (29%), Gaps = 39/263 (14%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITH 78
++ DTF +L L + + + + ++ H
Sbjct: 71 WIHEDTFQSQHRLDTLVLTANPL--------IFMAETAL-------------SGPKALKH 109
Query: 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138
L + I + H+ K + + N ++ P KL +L+
Sbjct: 110 ------LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQN 162
Query: 139 CSQLKRLPAEI---LSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG 195
+ L E L + LNG I + + L + L + KG
Sbjct: 163 N-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221
Query: 196 L--CKLKSLKFLILNGCGITQLPENL---GQLFSLEEFCLRKTKFEKIPTNVIH-LSRLH 249
L ++SL + + S+E L+K F I +N H S L
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281
Query: 250 SFCLSYCERLQSLPKLPCNLKEL 272
L+ L LP L L
Sbjct: 282 ELDLTAT-HLSELPSGLVGLSTL 303
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 15/163 (9%)
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSR 177
+ + +NK N L +P + + + E + + + + ++ L
Sbjct: 4 SDQKCIEKEVNK--TYNCENLG-LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLIN 58
Query: 178 LLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFE 236
L L L C+ L L+L + + E L +L+ +T
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 237 KIPTNVI-HLSRLHSFCLSYCERLQSLP-----KLPCNLKELD 273
I + + L S L + S+ LK LD
Sbjct: 119 SIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTE-KLKVLD 159
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 38/271 (14%), Positives = 86/271 (31%), Gaps = 42/271 (15%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITH 78
+L + + L L ++ E + ++L +
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLE-------LGTGCL-------------ENLEN--- 351
Query: 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLS--QIITAARNFVTKTPNPSFIRSLNKLTILNL 136
L L++ H +I+ LS Q + + N +F + +L +L+L
Sbjct: 352 ---LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDL 407
Query: 137 SGCSQLKRLPAEILSAG--NMEEMILNGTAIEELP-SSIECLSRLLHLGLRDCK---RLK 190
+ +LK A+ ++ + L+ + ++ + L L HL L+
Sbjct: 408 AFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466
Query: 191 SLPKGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVIHLSRLH 249
L L L+ L+L+ C ++ + ++ L + L + + +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526
Query: 250 SFCLSY----CERLQSLPKLPCNLKELDADH 276
L+ LP L + ++
Sbjct: 527 YLNLASNHISIILPSLLPILS-QQRTINLRQ 556
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-10
Identities = 50/315 (15%), Positives = 102/315 (32%), Gaps = 41/315 (13%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
L + R++ L + I I F I+ L+ ++ LP
Sbjct: 59 KLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110
Query: 76 IT--HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTI 133
+ L +L + +++ L G H+ ++ + N + + + +F ++ L
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQN 169
Query: 134 LNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP 193
L LS +L + ++ ++ ++ + L + L + +
Sbjct: 170 LQLSSN-RLTHVDLSLIP--SLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVR 221
Query: 194 KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNV-IHLSRLHSFC 252
+ L L L +T L L E L + EKI + + + RL
Sbjct: 222 GPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 253 LSYCERLQSLPKLPC---NLKELDADHCAALESL-SDLFSISYDYYIRCFELSTNYKLDR 308
+S RL +L LK LD H L + + + LD
Sbjct: 279 ISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY---------LDH 327
Query: 309 NELRSILEDALQKIQ 323
N + ++ ++
Sbjct: 328 NSIVTLKLSTHHTLK 342
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 53/269 (19%), Positives = 95/269 (35%), Gaps = 32/269 (11%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
L F KL L N+++ I+D F ++ L L +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNL--------ERIEDDTFQATTSLQNLQLSSNRLTHVD- 181
Query: 76 ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135
++ L V ++ + L + + + A+ N + P +LTIL
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIA----V-EELDASHNSINVVRGPVN----VELTILK 232
Query: 136 LSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPK 194
L L +L+ + E+ L+ +E++ + RL L + + RL +L
Sbjct: 233 LQHN-NLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL 289
Query: 195 GLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLS 254
+ +LK L L+ + + N Q LE L + + L + LS
Sbjct: 290 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLS 347
Query: 255 Y----CERLQSLPKLPCNLKELDAD-HCA 278
+ C L++L + DAD HC
Sbjct: 348 HNDWDCNSLRALFRNVARPAVDDADQHCK 376
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 18/249 (7%)
Query: 34 LKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSN 91
FY+ I+ + + +D + + + ++ LP+ + ++ LL +
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80
Query: 92 IQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS 151
I+++ + Q + N + P F +++ LT+L L L LP I
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERN-DLSSLPRGIFH 138
Query: 152 A-GNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG 209
+ + ++ +E + + + L +L L RL + L + SL ++
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSL--IPSLFHANVSY 195
Query: 210 CGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPC-- 267
++ L ++EE + V L L + L L
Sbjct: 196 NLLSTLAI----PIAVEELDASHNSINVVRGPV--NVELTILKLQHN-NLTDTAWLLNYP 248
Query: 268 NLKELDADH 276
L E+D +
Sbjct: 249 GLVEVDLSY 257
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 27/219 (12%), Positives = 77/219 (35%), Gaps = 20/219 (9%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSI-ECLSRLLH 180
S ++ +++ +Q E ++ N + + + + +LP+++ + ++
Sbjct: 14 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73
Query: 181 LGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQ-LFSLEEFCLRKTKFEKI 238
L L D + ++ + +++ L + I LP ++ Q + L L + +
Sbjct: 74 LNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132
Query: 239 PTNV-IHLSRLHSFCLSYCERLQSLPK-----LPCNLKELDADHCA----ALESLSDLFS 288
P + + +L + +S L+ + +L+ L L + LF
Sbjct: 133 PRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATT-SLQNLQLSSNRLTHVDLSLIPSLFH 190
Query: 289 ISYDY-YIRCFELSTNYK---LDRNELRSILEDALQKIQ 323
+ Y + + + N + + ++
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 229
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 63/336 (18%), Positives = 114/336 (33%), Gaps = 43/336 (12%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
L F KL L N+++ I+D F ++ L L +
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNL--------ERIEDDTFQATTSLQNLQLSSNRLTHVD- 187
Query: 76 ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135
++ L V ++ + L + + + A+ N + P + +LTIL
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIA----V-EELDASHNSINVVRGPVNV----ELTILK 238
Query: 136 LSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPK 194
L L +L+ + E+ L+ +E++ + RL L + + RL +L
Sbjct: 239 LQHN-NLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL 295
Query: 195 GLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLS 254
+ +LK L L+ + + N Q LE L + + L + LS
Sbjct: 296 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLS 353
Query: 255 Y----CERLQSLPKLPCNLKELDAD-HCAALESLSDLFSISYDYYIRCFELSTNY---KL 306
+ C L++L + DAD HC L + C E Y L
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHG--------LCCKESDKPYLDRLL 405
Query: 307 DRNELRSILEDALQKIQDMASTTRWKQLYENLEKIS 342
L S++E + ++T + I+
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYIT 441
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 50/314 (15%), Positives = 100/314 (31%), Gaps = 39/314 (12%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
L + R++ L + I I F I+ L+ ++ LP
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116
Query: 76 --ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTI 133
+ L +L + +++ L G H+ ++ + N + + + +F ++ L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQN 175
Query: 134 LNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP 193
L LS +L + ++ ++ ++ + L + L + +
Sbjct: 176 LQLSSN-RLTHVDLSLIP--SLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVR 227
Query: 194 KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVI-HLSRLHSFC 252
+ L L L +T L L E L + EKI + + RL
Sbjct: 228 GPVN--VELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284
Query: 253 LSYCERLQSLPKLPC---NLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRN 309
+S RL +L LK LD H L + + LD N
Sbjct: 285 ISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY---------LDHN 334
Query: 310 ELRSILEDALQKIQ 323
+ ++ ++
Sbjct: 335 SIVTLKLSTHHTLK 348
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 28/213 (13%), Positives = 68/213 (31%), Gaps = 42/213 (19%)
Query: 127 SLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDC 186
+LN I+ +++LPA +L + ++ L L D
Sbjct: 49 TLNNQKIVTFKNS-TMRKLPAALLDS----------------------FRQVELLNLNDL 85
Query: 187 KRLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQ-LFSLEEFCLRKTKFEKIPTNV-I 243
+ ++ + +++ L + I LP ++ Q + L L + +P +
Sbjct: 86 Q-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144
Query: 244 HLSRLHSFCLSYCERLQSLPK-----LPCNLKELDADHCA----ALESLSDLFSISYDY- 293
+ +L + +S L+ + +L+ L L + LF + Y
Sbjct: 145 NTPKLTTLSMSNN-NLERIEDDTFQATT-SLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 202
Query: 294 YIRCFELSTNYK---LDRNELRSILEDALQKIQ 323
+ + + N + + ++
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 34/275 (12%), Positives = 80/275 (29%), Gaps = 27/275 (9%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
+ ++ L + + S I ++ L L
Sbjct: 24 QALASLRQSAWNVKELDLSGNPL--------SQISAADLAPFTKLELLNLSSNVLYETLD 75
Query: 76 ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135
+ + L L++ ++ +Q+L G + + + AA N +++ +
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPS----I-ETLHAANNNISRVSCSRG----QGKKNIY 126
Query: 136 LSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSS--IECLSRLLHLGLRDCKRLKSL 192
L+ ++ L ++ + L I+ + + L HL L+ + +
Sbjct: 127 LANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDV 184
Query: 193 PKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFC 252
+ LK L L+ + + + LR K I + L F
Sbjct: 185 KGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243
Query: 253 LSYCE-RLQSLPKLPCNLKELDADHCAALESLSDL 286
L +L + + ++ L+
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 164 AIEELPSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN-LGQ 221
AI E+ + +R + D LK ++K L L+G ++Q+ L
Sbjct: 1 AIHEIKQN---GNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Query: 222 LFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADH 276
LE L + ++ LS L + L+ +Q L P +++ L A +
Sbjct: 57 FTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLVGP-SIETLHAAN 108
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 44/245 (17%), Positives = 81/245 (33%), Gaps = 44/245 (17%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
+ ++F +R L L+ + I I+ F + L L ++P+
Sbjct: 78 IIKVNSFKHLRHLEILQLSRNHI--------RTIEIGAFNGLANLNTLELFDNRLTTIPN 129
Query: 76 --ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTI 133
+ +KL L + + + I P+ +F + L
Sbjct: 130 GAFVYLSKLKELWL-------------RNNPIESI-----------PSYAF-NRIPSLRR 164
Query: 134 LNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSL 192
L+L +L + N+ + L + E+P ++ L +L L L L ++
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN-HLSAI 222
Query: 193 PKG-LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVI-HLSRLH 249
G L L+ L + I + N L SL E L +P ++ L L
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282
Query: 250 SFCLS 254
L
Sbjct: 283 RIHLH 287
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 9e-05
Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 25/193 (12%)
Query: 139 CS--QLKRLPAEILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPKG 195
C L+ +P I + N + L+ I+ + + + L L L L ++++ G
Sbjct: 50 CVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIG 106
Query: 196 -LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCL 253
L +L L L +T +P L L+E LR N + + S+
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN--------N--PIESIPSYAF 156
Query: 254 SYCERLQSLPKLPCN-LKELDADHCAALESLSDLF----SISY-DYYIRCFELSTNYKLD 307
+ L+ L L + L +L L ++ +L L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELD-LS 215
Query: 308 RNELRSILEDALQ 320
N L +I + Q
Sbjct: 216 GNHLSAIRPGSFQ 228
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 46/322 (14%), Positives = 90/322 (27%), Gaps = 59/322 (18%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITH 78
+ F+ L ++ + + + I+ VF +LP +
Sbjct: 44 VIQKGAFSGFGDLEKIEISQNDV-------LEVIEADVF-------------SNLPKLHE 83
Query: 79 PAKLVLLEVPHSN-IQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137
+ + +N + + + Q + + + P+ I SL +L++
Sbjct: 84 ------IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQ 136
Query: 138 GCSQLKRLPAEILS--AGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG 195
+ + + + LN I+E+ +S ++L L L D L+ LP
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196
Query: 196 -LCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLS 254
L ++ I LP N+ L ++ L
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSY-------------------GLENLKKLRARSTYNLK 237
Query: 255 YCERLQSLPKLPCNLKELDAD---HCAALESLSDLFSISYDYY--IRCFELSTNYKLDRN 309
L+ L L E HC A + S + + R
Sbjct: 238 KLPTLEKLV----ALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARG 293
Query: 310 ELRSILEDALQKIQDMASTTRW 331
+ S+ ED T
Sbjct: 294 QRSSLAEDNESSYSRGFDMTYT 315
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 11/168 (6%)
Query: 121 NPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLH 180
+ LN + + + +K + I N+ ++ LNG + ++ + L L
Sbjct: 38 DAVTQNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLANLKNLGW 94
Query: 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPT 240
L L + K +K L L LK LK L L GI+ + L L LE L K I T
Sbjct: 95 LFLDENK-VKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-T 150
Query: 241 NVIHLSRLHSFCLSYC--ERLQSLPKLPCNLKELDADHCAALESLSDL 286
+ L++L + L + L L L+ L + L L
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVPLAGLT-KLQNLYLSKN-HISDLRAL 196
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 42/251 (16%), Positives = 89/251 (35%), Gaps = 25/251 (9%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
+ F ++ L L N+ I S I F ++ L+ LK LP
Sbjct: 66 EIKDGDFKNLKNLHTLILINNKI--------SKISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 76 ITHPAKLVLLEVPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTP-NPSFIRSLNKLTI 133
P L L V + I ++ ++ ++ N + + + + KL+
Sbjct: 118 KM-PKTLQELRVHENEITKVRKSVFNGLNQM-IVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 134 LNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSL 192
+ ++ + +P + ++ E+ L+G I ++ + S++ L+ L LGL + ++
Sbjct: 176 IRIADT-NITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAV 231
Query: 193 PKGLCK-LKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSF 251
G L+ L LN + ++P L ++ L I +N
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC----PPG 287
Query: 252 CLSYCERLQSL 262
+ +
Sbjct: 288 YNTKKASYSGV 298
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 44/198 (22%)
Query: 131 LTILNLSGCSQLKRLPAEILS-AGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKR 188
+L+L +++ + N+ +IL I ++ L +L L L +
Sbjct: 54 TALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-Q 111
Query: 189 LKSLPKGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLR--KTKFEKIPTNV-IH 244
LK LP+ + K+L+ L ++ IT++ ++ L + L K I
Sbjct: 112 LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 245 LSRLHSFCLSYCERLQSLPK-LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303
+ +L ++ + ++P+ LP +L EL
Sbjct: 170 MKKLSYIRIADT-NITTIPQGLPPSLTELH------------------------------ 198
Query: 304 YKLDRNELRSILEDALQK 321
LD N++ + +L+
Sbjct: 199 --LDGNKITKVDAASLKG 214
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 7e-09
Identities = 42/265 (15%), Positives = 97/265 (36%), Gaps = 24/265 (9%)
Query: 24 TFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLV 83
T T + + +++ + D ++ L +KS+ + + L
Sbjct: 19 TDTALAEKMKTVLGKTNVTD-----TVSQTD--LDQVTTLQADRLGIKSIDGVEYLNNLT 71
Query: 84 LLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLK 143
+ ++ + + I N + + +L LT L L Q+
Sbjct: 72 QINFSNNQLTDITPLKN--LTKLVDILMNNNQIADITP---LANLTNLTGLTLFNN-QIT 125
Query: 144 RLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLK 203
+ + + N+ + L+ I ++ + + L+ L L + + K L L +L+
Sbjct: 126 DIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180
Query: 204 FLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC--ERLQS 261
L ++ ++ + L +L +LE + I + L+ L L+ + + +
Sbjct: 181 RLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGT 238
Query: 262 LPKLPCNLKELDADHCAALESLSDL 286
L L NL +LD + + +L+ L
Sbjct: 239 LASLT-NLTDLDLANN-QISNLAPL 261
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 32/249 (12%), Positives = 73/249 (29%), Gaps = 18/249 (7%)
Query: 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVL 84
+ L L + + + + + L + +L ++ KL
Sbjct: 217 LGILTNLDELSLNGNQLK-----DIGTLAS--LTNLTDLDLANNQISNLAPLSGLTKLTE 269
Query: 85 LEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR 144
L++ + I + + N + + S I +L LT L L +
Sbjct: 270 LKLGANQISNIS--PLAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFN-NISD 323
Query: 145 LPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204
+ + S ++ + + ++ S + L+ + L + + L L L +
Sbjct: 324 IS-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQ-ISDLT-PLANLTRITQ 379
Query: 205 LILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK 264
L LN T P N S+ T P + +++ +
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW-NLPSYTNE 438
Query: 265 LPCNLKELD 273
+ +
Sbjct: 439 VSYTFSQPV 447
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 10/150 (6%)
Query: 113 RNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS-AGNMEEMILNGTAIEELPSS 171
N +++ L L L LS L + +E N+ + L+ + L
Sbjct: 48 HNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106
Query: 172 I-ECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPE----NLGQLFSL 225
+ L L L L + + + + + L+ L L+ I++ P + +L L
Sbjct: 107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165
Query: 226 EEFCLRKTKFEKIPTNVI-HLSRLHSFCLS 254
L K +K+P + L L
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 24/137 (17%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHL 181
++ L+LSG + L +PSS+ L L L
Sbjct: 43 CDTDTQTYRVNNLDLSGLN-------------------LPKPY--PIPSSLANLPYLNFL 81
Query: 182 GLRDCKRLK-SLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KI 238
+ L +P + KL L +L + ++ +P+ L Q+ +L +
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 239 PTNVIHLSRLHSFCLSY 255
P ++ L L
Sbjct: 142 PPSISSLPNLVGITFDG 158
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 31/161 (19%)
Query: 122 PSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHL 181
P F+ + L L+ S + L+GT LP SI L L+ +
Sbjct: 118 PDFLSQIKTLVTLDFSYNA-------------------LSGT----LPPSISSLPNLVGI 154
Query: 182 GLRDCKRLKSLPKGLCKLKSL-KFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KI 238
+ ++P L + ++ +T ++P L +L L + E
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213
Query: 239 PTNVIHLSRLHSFCLSYCERLQ-SLPKL--PCNLKELDADH 276
L+ L L K+ NL LD +
Sbjct: 214 SVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRN 253
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 41/280 (14%), Positives = 77/280 (27%), Gaps = 48/280 (17%)
Query: 22 SDTFTKMRKLRFLKFYNSSINGE--------------NKCKVSNIQDPVFPEIRYLFWHG 67
D F + + + +I CK ++ L +
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334
Query: 68 YPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQ-------------HHCKLSQIITA--- 111
+ S L L++ + + G Q + + +
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394
Query: 112 ---------ARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS-AGNMEEMILN 161
+ + + S SL L L++S + I + ++E + +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMA 453
Query: 162 GTAIEE--LPSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN 218
G + +E LP L L L L C+ L+ L L SL+ L ++ L
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 219 -LGQLFSLEEFCLRKTKFEKIPTNVIH--LSRLHSFCLSY 255
L SL+ + S L L+
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 132 TILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLK 190
+ ++P + + + + L+ + L S L L L C+
Sbjct: 10 ITYQCMELN-FYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 191 SLPKGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVI-HLSRL 248
L L LIL G I L L SL++ +T + I HL L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 249 HSFCLSYC-----ERLQSLPKLPCNLKELD 273
+++ + + L NL+ LD
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLT-NLEHLD 155
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 31/265 (11%), Positives = 70/265 (26%), Gaps = 34/265 (12%)
Query: 17 EIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSI 76
+++ + L + E + L + L L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL--EKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 77 THPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136
+ + + + + + + + S+ L L
Sbjct: 271 LDDIIDLF-----NCLTNV-----------SSFSLVSVTIERVKDFSY---NFGWQHLEL 311
Query: 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLS-RLLHLGLRDCKRLKSLPKG 195
C + P L +++ + S ++ S L L +
Sbjct: 312 VNCK-FGQFPTLKLK--SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 196 LCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVI--HLSRLHSFCL 253
SLK+L L+ G+ + N L LE + + +++ + L L +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 254 SYCERLQSLP-----KLPCNLKELD 273
S+ + L +L+ L
Sbjct: 429 SHT-HTRVAFNGIFNGLS-SLEVLK 451
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 52/296 (17%), Positives = 97/296 (32%), Gaps = 34/296 (11%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLP- 74
HL S +F +L+ L I I+D + + L G P++SL
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQT--------IEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 75 -SITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTI 133
+ + + L L +N+ L + H K + + A N + P + +L L
Sbjct: 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 134 LNLSGCSQLKRLPAEILSA-----GNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKR 188
L+LS +++ + L + L+ + + RL L LR+
Sbjct: 154 LDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 189 LKSLPKGLCK-LKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSR 247
++ K + L L+ L N G L ++ L I L+
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFR----NEGNLEKFDKSALEGLCNLTIEEF--RLAY 266
Query: 248 LHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303
L + + L N+ ++ + SY++ + EL
Sbjct: 267 LDYYLDDIIDLFNCLT----NVSSFSLVSV----TIERVKDFSYNFGWQHLELVNC 314
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 24/199 (12%)
Query: 113 RNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMIL-NGTAIEELPS 170
+ P+ +F +L ++ + +S L++L + + + + N + +
Sbjct: 40 ETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98
Query: 171 SI-ECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFL----ILNGCGITQLPENL--GQLF 223
+ L L LG+ + LK P L K+ S I + +T +P N G
Sbjct: 99 DALKELPLLKFLGIFNT-GLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156
Query: 224 SLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP-----KLPCNLKELDADHCA 278
L F + + ++L + L+ + L + + LD +
Sbjct: 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216
Query: 279 -------ALESLSDLFSIS 290
LE L +L + +
Sbjct: 217 VTALPSKGLEHLKELIARN 235
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 36/269 (13%), Positives = 83/269 (30%), Gaps = 20/269 (7%)
Query: 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN 129
L +P + PA + +++ ++I +L + + Q + + + R L+
Sbjct: 22 LHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 130 KLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEE--LPSSI-ECLSRLLHLGLRD 185
L IL L +Q +L + N+E + L ++ L + + L+ L L LRD
Sbjct: 80 SLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 186 CKRLKSL-PKGL-CKLKSLKFLILNGCGITQLPENL---GQLFSLEEFCLRKTKFEKIPT 240
+K + P ++ L L + + E Q L + +
Sbjct: 139 N-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Query: 241 NVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFEL 300
+ + + + S+ L + I + +
Sbjct: 198 YWLGWEKCGNP-----FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 301 STNYKLDRNELRSILEDALQKIQDMASTT 329
++ + + ++ T
Sbjct: 253 GSS--FGHTNFKDPDNFTFKGLEASGVKT 279
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 35/237 (14%), Positives = 75/237 (31%), Gaps = 27/237 (11%)
Query: 19 HLYSDTFTKMRK--LRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSL 73
+ + + L+ + ++ N+ + + I L G K
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227
Query: 74 PSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIR-SLNKLT 132
+ + ++ + + G N +F + +
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------HTNFKDPDNFTFKGLEASGVK 278
Query: 133 ILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLK 190
+LS S++ L + S ++E++ L I ++ + L+ LL L L L
Sbjct: 279 TCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LG 336
Query: 191 SLPKGLC-KLKSLKFLILNGCGITQLPE----NLGQLFSLEEFCLRKTKFEKIPTNV 242
S+ + L L+ L L+ I L + L L L L + + +P +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA---LDTNQLKSVPDGI 390
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 28/245 (11%), Positives = 65/245 (26%), Gaps = 44/245 (17%)
Query: 113 RNFVTKTPNPSFIRSLNKLTILNLSGCS-----------------------QLKRLPAEI 149
N +T N + L L L+ L L +
Sbjct: 61 NNRITYISNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119
Query: 150 LSA-GNMEEMILNGTAIEELPSSI--ECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFL 205
++ + L G + L + L++L L + + + + L L+ L
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179
Query: 206 ILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVI-HLSRLHSFCLSYCERLQSLP 263
++ + L + ++ L + + + S + L
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD------TD 233
Query: 264 KLPCNLKELDADHCAALESLSDLFSISYDY-----YIRCFELSTNYK---LDRNELRSIL 315
+ EL +L ++ ++ + RN+L+S+
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293
Query: 316 EDALQ 320
+
Sbjct: 294 DGIFD 298
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 32/225 (14%)
Query: 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPSITH 78
D+F+ + L L +SN+ F + +L G P K+L +
Sbjct: 93 EDSFSSLGSLEHLDLSY--------NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144
Query: 79 PAKLVLLEVPH----SNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTIL 134
+ L L++ ++ + + + + S +S+ ++ L
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL-KSIQNVSHL 203
Query: 135 NLSGCSQLKRLPAEI------LSAGNMEEMILNGTAIEELPS----SIECLSRLLHLGLR 184
L Q L + + + L+ EL + S+ ++ +
Sbjct: 204 ILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262
Query: 185 DCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE----NLGQLFSL 225
D L + K L ++ L L + + +P+ L L +
Sbjct: 263 DE-SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 49/349 (14%), Positives = 106/349 (30%), Gaps = 46/349 (13%)
Query: 10 LDMS--KVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKV-SNIQDPVFPEIRYLFWH 66
L + + + L F ++ L L + I ++ + +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK-----LNSLKSIDFS 156
Query: 67 GYPLKSLPSIT----HPAKLVLLEVPHSNIQQLGDGGQHHCKLS------QIITAARNFV 116
+ + L + +++ C +I+ + N
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
Query: 117 TKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSI---E 173
T +F +++K +L + I++ +
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGA-------------GFGFHNIKDPDQNTFAGL 263
Query: 174 CLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLR 231
S + HL L + SL LK LK L L I ++ + L +L+ L
Sbjct: 264 ARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 232 KTKFEKIPTNV-IHLSRLHSFCLSYCERLQSLP----KLPCNLKELDADHCAALESLSDL 286
++ ++ L ++ L + + K L+ LD AL ++ +
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFI 380
Query: 287 FSISYDYYIRCFELSTNYKLD-RNELRSILEDALQKIQDMASTTRWKQL 334
SI ++ +L T K++ L + E+ L+ + + R L
Sbjct: 381 PSIPD-IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 40/277 (14%), Positives = 78/277 (28%), Gaps = 31/277 (11%)
Query: 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN 129
L +P L + + I+ + + Q++ + T + R+L
Sbjct: 16 LTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73
Query: 130 KLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEEL---PSSIECLSRLLHLGLRD 185
L IL+L ++ L + ++ E+ L + + L L L L
Sbjct: 74 NLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132
Query: 186 CKRLKSLPKG--LCKLKSLKFLILNGCGITQLPE----NLGQLFSLEEFCLRKTKFEKIP 239
+ ++SL KL SLK + + I + E L +L F L
Sbjct: 133 NQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRV 190
Query: 240 -------TNVIHLSRLHSFCLSYCERLQSLPKLPCN-LKELDADHCAALESLSDLF---- 287
N L +S + N + + A +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250
Query: 288 ---SISYDYYIRCFELSTNY-KLDRNELRSILEDALQ 320
+ + S + L + S+ +
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 37/243 (15%), Positives = 74/243 (30%), Gaps = 41/243 (16%)
Query: 19 HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF---PEIRYLFWHGYPLKSLPS 75
LYS F + K+ ++ + I + IQD F +++ L L ++
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHI--------AIIQDQTFKFLEKLQTLDLRDNALTTIHF 379
Query: 76 ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135
I + L + ++ I + N + F+ + L IL
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANL-------IHLSENRLENLDILYFLLRVPHLQILI 432
Query: 136 LSGCSQLKRLPAEILSAG--NMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP 193
L+ + + + ++E++ L ++ + C L
Sbjct: 433 LNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL------------ 479
Query: 194 KGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFC 252
L+ L LN + LP L +L L + + N + L
Sbjct: 480 ------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN-DLPANLEILD 532
Query: 253 LSY 255
+S
Sbjct: 533 ISR 535
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 16/146 (10%)
Query: 139 CS--QLKRLPAEILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPKG 195
CS +L +P+ I + + +++ L + LPS L++L L L D +L++LP G
Sbjct: 23 CSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAG 79
Query: 196 LC-KLKSLKFLILNGCGITQLPENL-GQLFSLEEFCLRKTKFEKIPTNV-IHLSRLHSFC 252
+ +LK+L+ L + + LP + QL +L E L + + + +P V L++L
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 253 LSYCERLQSLP-----KLPCNLKELD 273
L Y LQSLP KL +LKEL
Sbjct: 140 LGYN-ELQSLPKGVFDKLT-SLKELR 163
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIEELPSSI 172
N +TK F SL L L L +QL LP + S + + L + LPS++
Sbjct: 50 NQITKLEPGVF-DSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107
Query: 173 -ECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE----NLGQL 222
+ L L L + C +L LP+G+ +L L L L+ + +P L L
Sbjct: 108 FDRLVHLKELFM-CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIEELPSSI 172
N T + L +L +N S ++ + A + E++L +E + +
Sbjct: 42 NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100
Query: 173 -ECLSRLLHLGLRDCKRLKSLPKGL-CKLKSLKFLILNGCGITQLPE----NLGQLFSL 225
+ L L L LR + + + L S++ L L IT + L L +L
Sbjct: 101 FKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 13/151 (8%)
Query: 131 LTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRL 189
TIL+LS + L L + ++ L+ + +L L L L L +L
Sbjct: 33 TTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-LPVLGTLDLSH-NQL 89
Query: 190 KSLPKGLCKLKSLKFLILNGCGITQLPENL-GQLFSLEEFCLRKTKFEKIPTNV-IHLSR 247
+SLP L +L L ++ +T LP L L+E L+ + + +P + +
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 248 LHSFCLSYCERLQSLP-----KLPCNLKELD 273
L L+ L LP L NL L
Sbjct: 150 LEKLSLANN-NLTELPAGLLNGLE-NLDTLL 178
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 48 KVSNIQDPVF---PEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCK 104
+ + L L L L L++ H+ +Q L GQ
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA 101
Query: 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGT 163
L ++ + N +T P + R L +L L L G ++LK LP +L+ +E++ L
Sbjct: 102 L-TVLDVSFNRLTSLPLGAL-RGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANN 158
Query: 164 AIEELPSSI-ECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG 209
+ ELP+ + L L L L++ L ++PKG L F L+G
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 38/176 (21%)
Query: 113 RNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSI 172
N + + SF S +L +L+LS C +++ + +
Sbjct: 37 FNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAYQS-------------------- 74
Query: 173 ECLSRLLHLGLRDCKRLKSLPKGL-CKLKSLKFLILNGCGITQLPENL-GQLFSLEEFCL 230
LS L L L ++SL G L SL+ L+ + L G L +L+E +
Sbjct: 75 --LSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 231 RKTKFEKIPTNVI--HLSRLHSFCLSYCERLQSLP--------KLPCNLKELDADH 276
+ +L+ L LS ++QS+ ++P LD
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSL 186
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 3/117 (2%)
Query: 123 SFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHL 181
+ I L+ L L + G + ++ + ++ +A ++ + I L ++ +
Sbjct: 82 NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141
Query: 182 GLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKI 238
L + + L L LK L + G+ + L +
Sbjct: 142 DLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 159 ILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN 218
+L ++ + + ++ L ++ L + + L G+ ++K L +N T
Sbjct: 29 LLGQSSTANI--TEAQMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNY-NP 83
Query: 219 LGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYC----ERLQSLPKLPCNLKELD 273
+ L +LE + N+ L+ L +S+ L + LP + +D
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-KVNSID 142
Query: 274 ADHCAALESLSDL 286
+ A+ + L
Sbjct: 143 LSYNGAITDIMPL 155
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIEELPSSI 172
N + P +F KL ++LS +Q+ L + ++ ++L G I ELP S+
Sbjct: 42 NTIKVIPPGAF-SPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 173 -ECLSRLLHLGLRDCKRLKSLPKGL-CKLKSLKFLILNGCGITQLPE----NLGQLFSL 225
E L L L L + ++ L L +L L L + + + L + ++
Sbjct: 100 FEGLFSLQLLLL-NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 139 CS--QLKRLPAEILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPKG 195
C L +P + + E+ L I+ +P +L + L + + + L
Sbjct: 18 CRGKGLTEIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPD 74
Query: 196 LC-KLKSLKFLILNGCGITQLPENL-GQLFSLEEFCLRKTKFEKIPTNVI-HLSRLHSFC 252
L+SL L+L G IT+LP++L LFSL+ L K + + L L+
Sbjct: 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134
Query: 253 LSYCERLQSLPK 264
L +LQ++ K
Sbjct: 135 LYD-NKLQTIAK 145
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-06
Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 21/217 (9%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSI 172
N++++ SL+KL IL +S +++ L + +E + L+ + ++
Sbjct: 31 NYISELWTSDI-LSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISC-- 86
Query: 173 ECLSRLLHLGLRDCKRLKSLPKG--LCKLKSLKFLILNGCGITQLP----------ENLG 220
L HL L +LP + LKFL L+ + + + L
Sbjct: 87 HPTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Query: 221 QLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKEL--DADHCA 278
L + T +H+ + + + L + +
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205
Query: 279 ALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSIL 315
LS L + + + L+ N + N IL
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLN-NIETTWNSFIRIL 241
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-06
Identities = 46/330 (13%), Positives = 87/330 (26%), Gaps = 36/330 (10%)
Query: 13 SKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKS 72
+ E+ L + N + V + + I+ +
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209
Query: 73 LPSITHPAKLVLLEVPHSNIQQLGDGGQHHC----KLSQIITAARNFVTKTPNPSFIR-- 126
L + L N + + + + + V F
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269
Query: 127 ----SLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPS-SIECLSRLLH 180
SL L+I + + I NM + + +S LH
Sbjct: 270 YSGTSLKALSIHQVVS-DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328
Query: 181 LGLRDCKRLKSLPKGLC-KLKSLKFLILNGCGITQLPENLG---QLFSLEEFCLRKTKFE 236
L + L C L L+ LIL + +L + Q+ SL++ + +
Sbjct: 329 LDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 237 KIPTNVI--HLSRLHSFCLSYCERLQSLP--KLPCNLKELDADHCAALESLSDLFSISYD 292
L S +S L LP +K LD ++S+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQV----- 440
Query: 293 YYIRCFELS--TNYKLDRNELRSILEDALQ 320
+L + N+L+S+ +
Sbjct: 441 -----VKLEALQELNVASNQLKSVPDGIFD 465
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 6e-06
Identities = 35/269 (13%), Positives = 76/269 (28%), Gaps = 36/269 (13%)
Query: 4 EIEGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE---I 60
++ I L+ + + + T+ L + + + K+ P E I
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 61 RYLFWHGYPLKSLPSITHPA--KLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTK 118
L + + + A L++ V + + I + +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSSIECLSR 177
S + T LN + + S ++ +IL ++
Sbjct: 344 IHMVCP-PSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401
Query: 178 LLHLGLRDCKRLKSLPKG----LCKL-----------------------KSLKFLILNGC 210
+ L D L SL C +K L L+
Sbjct: 402 MSSLETLDV-SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460
Query: 211 GITQLPENLGQLFSLEEFCLRKTKFEKIP 239
I +P+++ L +L+E + + + +P
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVP 489
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 9/237 (3%)
Query: 113 RNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA-GNMEEMILNGTAIEELPSS 171
+N +++ P L++L +L LS +++ L + ++E + ++ ++ +
Sbjct: 61 QNSISELRMPDI-SFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC 118
Query: 172 IECLSRLLHLGLRDCKRLKSLPKGLC--KLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229
++ L HL L LP L L FL L+ QL L
Sbjct: 119 P--MASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175
Query: 230 LRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSI 289
L + L ++ L SL + N+ ++A L ++
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDEN 234
Query: 290 SYDYYIRCFELSTNYKLDRNELRSILEDALQKIQDMASTTRWKQLYENLEKISYPER 346
EL+ L L+ I ++ Y N+ ++ ER
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 69 PLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSL 128
P+ + A V + ++ L Q Q + + ++
Sbjct: 8 PINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAG---MQFF 62
Query: 129 NKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKR 188
L L+LS Q+ L + +EE+ +N ++ L + I L L L + +
Sbjct: 63 TNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNL-NGIPSAC-LSRLFLDNNE- 117
Query: 189 LKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248
L+ L LK+L+ L + + + LG L LE L + + L ++
Sbjct: 118 LRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKV 174
Query: 249 HSFCLSYC----ERLQSLPKL--PCNLKELD 273
+ L+ E ++ P+L +K+ D
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 8e-06
Identities = 48/329 (14%), Positives = 104/329 (31%), Gaps = 95/329 (28%)
Query: 103 CK-----LSQIITAAR-NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNME 156
CK I++ + + + + +L L +++ E+L N +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAV-SGTLRLFWTLLSKQEEMVQKFVEEVLRI-NYK 92
Query: 157 EMILNGTAIEEL-PSS-----IECLSRLLH----LGLRDCKRLK---SLPKGLCKLKSLK 203
+++ E+ PS IE RL + + RL+ L + L +L+ K
Sbjct: 93 -FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 204 FLILN---GCGITQL------PENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL-HSFCL 253
++++ G G T + + + F L T + L +L +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 254 SYCERLQSLPKLPCNLKEL---------DADHCAALESLSDLFSI----SYDYYIRCFEL 300
++ R + + + + L L ++ + +++ + C L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--LSCKIL 269
Query: 301 -STNYK----------------------LDRNELRSILEDAL------------------ 319
+T +K L +E++S+L L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 320 -----QKIQDMAST-TRWKQL-YENLEKI 341
+ I+D +T WK + + L I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTI 358
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-04
Identities = 51/341 (14%), Positives = 110/341 (32%), Gaps = 89/341 (26%)
Query: 40 SINGENKCKVS-NIQDPVF--PEIRYLF--WHGYPLKSLPS---ITHPAKLVLL-EVPHS 90
++ +S + E++ L + + LP T+P +L ++ E
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 91 NIQQLGDGGQH--HCKLSQIITAARNFVTKTPNPSFIRSL-NKLTILNLSGCSQLKRLPA 147
+ D +H KL+ II ++ N + P+ R + ++L++ S +P
Sbjct: 340 GLATW-DNWKHVNCDKLTTIIESSLNVL----EPAEYRKMFDRLSVFPPS-----AHIPT 389
Query: 148 EILSAGNMEEMILNGTAIEELPSSI--ECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFL 205
+LS ++ I+ + + L + + + S+P +LK
Sbjct: 390 ILLS-------LIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELK----- 436
Query: 206 ILNGCGITQLPENLGQLFS--LEEFCLRKT-KFEKIPTNVI------HLSRLHSFCLSYC 256
EN L ++ + + KT + + + H+ H + +
Sbjct: 437 --------VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHP 487
Query: 257 ERLQSLPKLPCNLKELDA------DHCAALESLSDLFS--ISYDYYI------------- 295
ER+ + + + L+ A S+ + Y YI
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 296 ------RCFELSTNYKLDR-------NELRSILEDALQKIQ 323
+ E K E +I E+A +++Q
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 1e-05
Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 24/113 (21%)
Query: 119 TPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRL 178
+ + LT L + L+ L L L L
Sbjct: 21 LDSLHHLPGAENLTELYIENQQHLQHLELRDLRG----------------------LGEL 58
Query: 179 LHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCL 230
+L + L+ + L L L+ + L Q SL+E L
Sbjct: 59 RNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG--DGGQHHCKLSQ--IITAARN 114
I + + +KS+ I + + L + + + + +L+ + N
Sbjct: 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALK------ELTNLTYLILTGN 95
Query: 115 FVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIEELPSSI- 172
+ PN F L L L L +QL+ LP + N+ + L ++ LP +
Sbjct: 96 QLQSLPNGVF-DKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153
Query: 173 ECLSRLLHLGLRDCKRLKSLPKGLC-KLKSLKFLILN 208
+ L+ L L L +L+SLP+G+ KL LK L L
Sbjct: 154 DKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLY 189
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 37/179 (20%), Positives = 61/179 (34%), Gaps = 27/179 (15%)
Query: 123 SFIRSLNKLTILNLSGCSQLKRLPAEILSAG--NMEEMILNGTAIEE-----LPSSIECL 175
+S +L LS C ++A N++E+ L + +++ L +
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 176 SRLLHLGLRDCKR------LKSLPKGLCKLKSLKFLILNGC-GITQLPENLGQLFSLEEF 228
+ L+ L + L+ L LKSLK LN + +L L + LEE
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLK---LNRAVPLEKLATLLQRAPQLEEL 240
Query: 229 CLRKTKFEKIPTNVIHLSRLHSFC-----LSYCER-----LQSLPKLPCNLKELDADHC 277
E P LS S C LS L ++ + L L+ +
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 44/266 (16%), Positives = 80/266 (30%), Gaps = 32/266 (12%)
Query: 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTP 120
+ L G L + ++ V+ + Q + + + + +
Sbjct: 50 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109
Query: 121 NPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNG------TAIEELPSSIEC 174
+ +KL L+L G + + N+ + L+G A++ L +
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL---LSS 166
Query: 175 LSRLLHLGLRDCKRLKSLPKGLCKL-----KSLKFLILNGC-------GITQLPENLGQL 222
SRL L L C K + +++ L L+G ++ L L
Sbjct: 167 CSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224
Query: 223 FSLE-EFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER-----LQSLPKLPCNLKELDADH 276
L+ + L+ L LS C L L ++P LK L
Sbjct: 225 VHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFG 281
Query: 277 CAALESLSDLFSISYDYYIRCFELST 302
+L L I C +T
Sbjct: 282 IVPDGTLQLLKEALPHLQINCSHFTT 307
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 12/178 (6%)
Query: 123 SFIRSLNKLTILNLS--GCSQLKRLPAEILSAG--NMEEMILNGTAIEELPSSIECLSRL 178
+ L +LN +++ E ++ ++ + + I EL + + L
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245
Query: 179 LHLGLRDCKRLKSLPKGLCKLKSLKFLILNGC---GITQLPENLGQLFSLEEFCLRKTKF 235
+P+ L + L G G ++P + + L
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305
Query: 236 --EKIPTNVIHLSRLHSFCLSYC---ERLQSLPKLPCNLKELDADHCAALESLSDLFS 288
E T + L L+ L + LK L + A + + D
Sbjct: 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 17/165 (10%)
Query: 130 KLTILNLSGCSQL--KRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSR------LLH 180
L L L CS L + + ++ +++ ++ E + L++ +L+
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198
Query: 181 LGLRDCKRL--KSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-K 237
+ + ++ K L +SL + + I +L +LEEFC +
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG 258
Query: 238 IPTNVIHLSRLHSFCLSYC-----ERLQSLPKLPCNLKELDADHC 277
+P ++L C + L +++LD +
Sbjct: 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 157 EMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLP 216
E+ IE++ +++ L HL L ++ + L +++L+ L L I ++
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLAL-STNNIEKI-SSLSGMENLRILSLGRNLIKKI- 85
Query: 217 ENLGQLF-SLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSY-----CERLQSLPKLPCNLK 270
ENL + +LEE + + + + + L L +S + L L L+
Sbjct: 86 ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLE 143
Query: 271 ELD 273
+L
Sbjct: 144 DLL 146
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 9e-04
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 114 NFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIEELPSSI 172
N + + + L L L L +QL + A +++E+ L I+E+ + +
Sbjct: 39 NELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 173 -ECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNG------CGI 212
L +L L L D ++ + G L SL L L C +
Sbjct: 98 FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.94 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.94 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.94 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.94 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.94 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.93 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.93 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.93 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.93 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.93 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.93 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.93 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.92 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.92 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.92 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.92 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.92 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.92 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.92 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.91 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.91 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.91 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.91 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.9 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.9 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.9 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.9 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.9 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.9 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.89 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.89 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.89 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.89 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.89 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.89 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.89 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.89 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.88 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.88 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.87 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.84 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.84 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.84 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.84 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.84 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.84 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.83 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.83 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.82 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.82 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.82 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.8 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.79 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.78 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.78 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.78 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.75 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.75 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.74 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.72 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.71 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.7 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.69 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.69 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.68 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.67 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.66 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.66 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.65 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.63 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.63 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.62 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.59 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.53 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.5 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.49 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.49 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.47 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.46 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.45 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.44 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.38 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.37 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.32 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.32 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.31 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.31 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.29 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.22 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.22 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.2 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.2 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.15 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.02 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.97 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.89 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.86 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.75 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.71 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.7 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.69 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.67 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.57 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.55 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.36 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.32 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.3 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.29 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.17 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.14 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.79 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.58 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.3 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.83 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.3 |
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=217.43 Aligned_cols=296 Identities=19% Similarity=0.135 Sum_probs=239.5
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.+|++++....+.++.|.++++|++|++++|.+++. .+..+..+. |++|++++|.++.++. +..+++|+.|
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV------EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEe------ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 457777777777788999999999999999988642 244555555 9999999999998884 4478999999
Q ss_pred EccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc
Q 043910 86 EVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA 164 (353)
Q Consensus 86 ~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 164 (353)
++++|.+..+. ..+..+++|+.|++++|.. +... ...+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCcc-ceeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 99999998864 4567799999999998753 3332 3478899999999999976554444568889999999999999
Q ss_pred CcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCcccch-h
Q 043910 165 IEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEKIPT-N 241 (353)
Q Consensus 165 i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~ 241 (353)
+..++. .+..+++|++|++++|...+.++.......+|+.|++++|.++.+|. .+..+++|+.|++++|.+..++. .
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 996654 68889999999999999888888776677799999999999998884 67889999999999999986654 5
Q ss_pred HhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhH
Q 043910 242 VIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSI 314 (353)
Q Consensus 242 l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~ 314 (353)
+..+++|+.|++++|......+. .+++|+.|+++++ .++.++...+ ..+++|+.+++.+++.-++.....+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVF-HSVGNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGB-SCGGGCCEEECCSSCEECSGGGHHH
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHc-CCCcccCEEEccCCCccCccchHhH
Confidence 78899999999999754443343 3578999999998 6777776544 3467899999999988777655433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=216.26 Aligned_cols=301 Identities=18% Similarity=0.130 Sum_probs=223.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCC-C-CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSL-P-SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l-~-~~~~~~~L~~L 85 (353)
.+|++++...++.+..|.++++|++|++++|.+.+.. .+..+..++ |++|++++|.++.+ | .+..+++|++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-----RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE-----CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceE-----CcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 4567777777777888999999999999999875432 233455455 99999999998866 3 35578999999
Q ss_pred EccCCCccc-cCC--CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhc-----------
Q 043910 86 EVPHSNIQQ-LGD--GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS----------- 151 (353)
Q Consensus 86 ~L~~~~i~~-l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------- 151 (353)
++++|.+++ .+. .+..+++|++|++++|.. +.......+..+++|++|++++|...+..+..+..
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999976 222 266789999999998753 33332234788999999999998765554444433
Q ss_pred -----------------------CCCccEEEccCccCcc-cCcccc----------------------------------
Q 043910 152 -----------------------AGNMEEMILNGTAIEE-LPSSIE---------------------------------- 173 (353)
Q Consensus 152 -----------------------~~~L~~L~l~~~~i~~-l~~~~~---------------------------------- 173 (353)
+++|++|++++|.++. .|..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 2567888888877652 222111
Q ss_pred -----CCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCccc-chhHhhcc
Q 043910 174 -----CLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKI-PTNVIHLS 246 (353)
Q Consensus 174 -----~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~ 246 (353)
..++|++|++++|...+..|..++.+++|+.|++++|.++.+ |..+..+++|++|++++|.+..+ +..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 125788888888766556677889999999999999999966 55788999999999999999865 56788999
Q ss_pred CCceeccccccccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH-HHhHHHH
Q 043910 247 RLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE-LRSILED 317 (353)
Q Consensus 247 ~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~-~~~~~~~ 317 (353)
+|+.|++++|......|. .+++|++|+++++ .++.++...+ ..+++|+.+++++++.-.... ...+..+
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 999999999765444343 3578999999997 5777776543 357889999999998776665 3333334
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=228.85 Aligned_cols=291 Identities=19% Similarity=0.199 Sum_probs=201.9
Q ss_pred eCCCcccc-ccCHHHHhcCCCCcEEEeeeCCCCCCccceeec-------------------CCCCC---CCccceEeecc
Q 043910 11 DMSKVEEI-HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSN-------------------IQDPV---FPEIRYLFWHG 67 (353)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------~~~~~---~~~L~~L~l~~ 67 (353)
+++++... .+....|.++++|++|++++|.+++..+..... +..+. ...|++|++++
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 34444433 444555677777777777777665433322110 11111 11256666666
Q ss_pred cCCC-CCCC-CCCCCCceEEEccCCCccc-cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc
Q 043910 68 YPLK-SLPS-ITHPAKLVLLEVPHSNIQQ-LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR 144 (353)
Q Consensus 68 ~~~~-~l~~-~~~~~~L~~L~L~~~~i~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 144 (353)
|.++ .+|. +..+++|+.|++++|.+++ ++..+..+++|+.|++++|...... +..+..+++|++|++++|...+.
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCc
Confidence 6554 3332 3356777777777777763 4455566777777777776532222 34677788888888888777777
Q ss_pred cchhhhcCCCccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcc----
Q 043910 145 LPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPEN---- 218 (353)
Q Consensus 145 ~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~---- 218 (353)
+|..+..+++|++|++++|.++ .+|.+++.+++|++|++++|...+.+|..++.+++|+.|++++|.++ .+|..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 7888888888888888888888 67778888888888888887766678888888888888888888765 34432
Q ss_pred ------------------------------------------------------------------cCCCCCCcEEEeeC
Q 043910 219 ------------------------------------------------------------------LGQLFSLEEFCLRK 232 (353)
Q Consensus 219 ------------------------------------------------------------------~~~l~~L~~L~l~~ 232 (353)
+..+++|+.|++++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 33456788899999
Q ss_pred CCCc-ccchhHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCccccccccccccEEEecCCcc
Q 043910 233 TKFE-KIPTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYK 305 (353)
Q Consensus 233 ~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~ 305 (353)
|.+. .+|..++++++|+.|++++|...+.+|.. +++|+.|+++++.--..+|.... .++.|+.+++++|.-
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDLSNNNL 716 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSEEECCSSEE
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEECcCCcc
Confidence 9988 78888999999999999998777788864 46788999999865556665443 367789999999843
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=203.69 Aligned_cols=271 Identities=14% Similarity=0.159 Sum_probs=194.5
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
+++++....++. .+..+++|++|++++|.+++..+ +.... |++|++++|.++.++.+..+++|++|+++
T Consensus 49 L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 49 LVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--------LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118 (347)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT
T ss_pred EEEeCCccccch--hhhhcCCccEEEccCCccccchh--------hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc
Confidence 345555444443 37889999999999998865321 33334 99999999999998888899999999999
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+|.+..++. +..+++|+.|++++|..++. .+.+..+++|++|++++|... .++. +..+++|+.|++++|.++.+
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCC
T ss_pred CCcccCchh-hccCCceeEEECCCCCCccc---ccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccc
Confidence 999988765 77889999999999876543 345788889999999886543 3333 77788888888888888877
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCC
Q 043910 169 PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L 248 (353)
+. +..+++|+++++++|. +..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|
T Consensus 193 ~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L 267 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKL 267 (347)
T ss_dssp GG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred cc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCc
Confidence 65 6777888888887753 444433 6677778888888887776665 677777888888777777653 46677777
Q ss_pred ceeccccccccccCCC--CCCCcceeecCCCcCccccCccccccccccccEEEecCCc
Q 043910 249 HSFCLSYCERLQSLPK--LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 249 ~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
+.|++++| .++.++. .+++|+.|++++|. ++..+.... ..+++|+.+++++|+
T Consensus 268 ~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 268 KMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTLFLSQNH 322 (347)
T ss_dssp CEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEEECCSSS
T ss_pred CEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhHh-hccccCCEEEccCCc
Confidence 77777776 3444432 34677777777774 443332222 235667777777775
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=204.01 Aligned_cols=260 Identities=17% Similarity=0.261 Sum_probs=202.4
Q ss_pred HhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCC
Q 043910 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC 103 (353)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~ 103 (353)
+..+++|++|++++|.+... +.+...+ |++|++++|.++.++.+..+++|+.|++++|.++.++ .+..++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~--------~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI--------QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC--------TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred chhcccccEEEEeCCccccc--------hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 45688899999999887431 2233344 9999999999888888778899999999999888764 477789
Q ss_pred CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEec
Q 043910 104 KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 183 (353)
+|++|++++|. ++ ..+.+..+++|++|++++|.....++. +..+++|++|++++|.+..++. +..+++|++|++
T Consensus 111 ~L~~L~l~~n~-i~---~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDN-IS---DISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSC-CC---CCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEEC
T ss_pred cCCEEECcCCc-cc---CchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEc
Confidence 99999998874 22 234478889999999999876666554 7888999999999998887765 778899999999
Q ss_pred cCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCC
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
++|. +..++. +..+++|+.+++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++| .++.++
T Consensus 185 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~ 259 (347)
T 4fmz_A 185 NYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDIN 259 (347)
T ss_dssp TTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred cCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCCh
Confidence 9864 555554 7788999999999998887665 7788899999999999887766 788899999999986 344444
Q ss_pred C--CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchH
Q 043910 264 K--LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRN 309 (353)
Q Consensus 264 ~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~ 309 (353)
. .+++|+.|++++| .+++++. ...+++|+.|++++|. +...
T Consensus 260 ~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~ 302 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSLFLNNNQ-LGNE 302 (347)
T ss_dssp GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSSC-CCGG
T ss_pred hHhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEEECcCCc-CCCc
Confidence 2 4578999999988 5666643 3456788999999984 4443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=217.99 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=78.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.+|++++....+.+++|.++++|++|++++|.+++.. +..+..+. |++|++++|.++.+|.. .+++|++|++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 97 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD------ISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL 97 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE------GGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcC------hHHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence 4567777777788889999999999999999886532 23344444 99999999999888877 7899999999
Q ss_pred cCCCcccc--CCCCcCCCCccEEecCCCc
Q 043910 88 PHSNIQQL--GDGGQHHCKLSQIITAARN 114 (353)
Q Consensus 88 ~~~~i~~l--~~~~~~~~~L~~L~l~~~~ 114 (353)
++|.++.+ +..+..+++|++|++++|.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cCCccccccchhhhccCCcceEEEecCcc
Confidence 99998863 4567778888888888764
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=203.94 Aligned_cols=277 Identities=16% Similarity=0.169 Sum_probs=209.7
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~ 86 (353)
+++++.....+....|..+++|++|++++|.+.+. .+..+..+. |++|++++|.++.++. +..+++|+.|+
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCccccc------ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34455555667788889999999999999988542 223455555 9999999999888763 44789999999
Q ss_pred ccCCCccccCCCC-cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCC-----------
Q 043910 87 VPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGN----------- 154 (353)
Q Consensus 87 L~~~~i~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----------- 154 (353)
+++|.++.++... ..+++|++|++++|.. +... ...+..+++|++|++++|.... ++ +..+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIE-DDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCC-TTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccC-hhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence 9999999888764 6789999999998753 3332 3467888999999999975443 22 233444
Q ss_pred --------ccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCC
Q 043910 155 --------MEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSL 225 (353)
Q Consensus 155 --------L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L 225 (353)
|+.|++++|.++.+|.. ..++|++|++++|. ++.. ..+..+++|+.|++++|.++.+ |..+..+++|
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCC-Cccc-HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 55555555555544432 24689999999865 4444 3578999999999999999865 7778999999
Q ss_pred cEEEeeCCCCcccchhHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCccccccccccccEEEecC
Q 043910 226 EEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELST 302 (353)
Q Consensus 226 ~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~ 302 (353)
+.|++++|.+..++..+..+++|+.|++++| .++.+|.. +++|+.|++++|. ++.++ ...+++|+.+++++
T Consensus 275 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSH 348 (390)
T ss_dssp CEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCS
T ss_pred CEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCC
Confidence 9999999999988887788999999999997 45666653 4789999999985 66665 34467899999999
Q ss_pred CccCc
Q 043910 303 NYKLD 307 (353)
Q Consensus 303 c~~l~ 307 (353)
++.-+
T Consensus 349 N~~~~ 353 (390)
T 3o6n_A 349 NDWDC 353 (390)
T ss_dssp SCEEH
T ss_pred CCccc
Confidence 96544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=220.06 Aligned_cols=306 Identities=18% Similarity=0.093 Sum_probs=223.3
Q ss_pred EEEEEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCc
Q 043910 6 EGICLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKL 82 (353)
Q Consensus 6 ~~i~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L 82 (353)
..-.++++++...++.+..|..+++|++|++++|.++. .+..+...+ |++|++++|.++.++ .+..+++|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------CChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 34456667777777777778888888888888887752 233344444 888888888877664 34477888
Q ss_pred eEEEccCCCcc-ccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEc
Q 043910 83 VLLEVPHSNIQ-QLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMIL 160 (353)
Q Consensus 83 ~~L~L~~~~i~-~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 160 (353)
+.|++++|.+. .++.. +..+++|++|++++|...........+..+++|++|++++|...+..+..+..+++|+.|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 88888888776 34433 56788888888888753221111235778888999999887666666777888889999999
Q ss_pred cCccCccc-C-ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCc--c--CcccCCCCCCcEEEeeCCC
Q 043910 161 NGTAIEEL-P-SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQ--L--PENLGQLFSLEEFCLRKTK 234 (353)
Q Consensus 161 ~~~~i~~l-~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~--~--~~~~~~l~~L~~L~l~~~~ 234 (353)
++|.++.. + ..+..+++|++|++++|......|..+..+++|++|++++|.++. + +..+..+++|+.|++++|.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 99888744 3 347788899999999876555566678889999999999998874 2 2457788899999999999
Q ss_pred Cccc-chhHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH
Q 043910 235 FEKI-PTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 235 l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
+..+ |..+..+++|+.|++++|......|.. ++.| .|++++| .++.++.... ..+++|+.+++++|+..++..
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLL-PILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGH-HHHHTSSEEECTTCCEECSGG
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhc-ccCCCCCEEeCCCCCccccCC
Confidence 8855 567888999999999987655544443 3566 8888887 4555554332 246789999999999988888
Q ss_pred HHhHHHHHHHh
Q 043910 311 LRSILEDALQK 321 (353)
Q Consensus 311 ~~~~~~~~~~~ 321 (353)
......+....
T Consensus 565 ~~~~~~w~~~~ 575 (606)
T 3t6q_A 565 NIYFLEWYKEN 575 (606)
T ss_dssp GHHHHHHHHHC
T ss_pred cHHHHHHHHhC
Confidence 77777776544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=225.55 Aligned_cols=287 Identities=16% Similarity=0.202 Sum_probs=182.1
Q ss_pred eCCCccccccCHHHHhcCCCCcEEEeeeCC-CCC-CccceeecCC-CCCCC-ccceEeecccCCCCCCC---CCCCCCce
Q 043910 11 DMSKVEEIHLYSDTFTKMRKLRFLKFYNSS-ING-ENKCKVSNIQ-DPVFP-EIRYLFWHGYPLKSLPS---ITHPAKLV 83 (353)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~-~~~~~-~L~~L~l~~~~~~~l~~---~~~~~~L~ 83 (353)
+++++......+..|.++++|++|++++|. +++ ..|....... .+... .|++|++++|.++.+|. +..+++|+
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCC
Confidence 334443333445666777777777777776 655 3332221110 11112 25555555555555554 33455555
Q ss_pred EEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCcc--------------------------CcEEeec
Q 043910 84 LLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNK--------------------------LTILNLS 137 (353)
Q Consensus 84 ~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~--------------------------L~~L~l~ 137 (353)
.|++++|.++.++ .+..+++|+.|++++|.. +.+ +..+..+++ |++|+++
T Consensus 577 ~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l-~~l--p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 577 LLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQI-EEI--PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EEECTTSCCCBCC-CCCTTSEESEEECCSSCC-SCC--CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECC
T ss_pred EEECCCCCcccch-hhcCCCcceEEECcCCcc-ccc--hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECc
Confidence 5555555555444 444445555555554432 111 123344444 4555555
Q ss_pred CCCCCcccch---hhh--cCCCccEEEccCccCcccCcccc-CCCCCCEEeccCCCCCcccCccccC--------CCCCC
Q 043910 138 GCSQLKRLPA---EIL--SAGNMEEMILNGTAIEELPSSIE-CLSRLLHLGLRDCKRLKSLPKGLCK--------LKSLK 203 (353)
Q Consensus 138 ~~~~~~~~~~---~~~--~~~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~--------l~~L~ 203 (353)
+|...+.+|. .+. .+++|+.|++++|.++.+|..+. .+++|++|++++|. ++.+|..+.. +++|+
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCcc
Confidence 5443332221 111 23467888888888887777654 78899999999864 5577764433 33899
Q ss_pred EEEeeCccCCccCcccC--CCCCCcEEEeeCCCCcccchhHhhccCCceecccc------ccccccCCCC---CCCccee
Q 043910 204 FLILNGCGITQLPENLG--QLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSY------CERLQSLPKL---PCNLKEL 272 (353)
Q Consensus 204 ~L~l~~~~i~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~------~~~l~~l~~~---~~~L~~L 272 (353)
.|++++|.++.+|..+. .+++|+.|++++|.+..+|..+..+++|+.|++++ |...+.+|.. +++|+.|
T Consensus 732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 99999999999998887 89999999999999998998899999999999977 4445666753 5789999
Q ss_pred ecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 273 DADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 273 ~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
++++|. ++.+|.... ++|+.|++++|+...
T Consensus 812 ~Ls~N~-L~~Ip~~l~----~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 812 QIGSND-IRKVDEKLT----PQLYILDIADNPNIS 841 (876)
T ss_dssp ECCSSC-CCBCCSCCC----SSSCEEECCSCTTCE
T ss_pred ECCCCC-CCccCHhhc----CCCCEEECCCCCCCc
Confidence 999985 588887632 589999999996543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=222.11 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=171.3
Q ss_pred cceEeecccCCC-CCCCCCCCCCceEEEccCCCccccCCCCcCCCC-ccEEecCCCcCcCCCCCCccccC--CccCcEEe
Q 043910 60 IRYLFWHGYPLK-SLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCK-LSQIITAARNFVTKTPNPSFIRS--LNKLTILN 135 (353)
Q Consensus 60 L~~L~l~~~~~~-~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~--l~~L~~L~ 135 (353)
|++|++++|.++ .+|.+..+++|+.|++++|.++.++..+..+++ |+.|++++|. ++.++ ..+.. +++|++|+
T Consensus 332 L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp--~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIP--NIFDAKSVSVMSAID 408 (636)
T ss_dssp CCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCC--SCCCTTCSSCEEEEE
T ss_pred CCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccccc--hhhhhcccCccCEEE
Confidence 555555555554 455333455555555555555555555556666 7777776654 23332 23333 33677777
Q ss_pred ecCCCCCcccchhhh-------cCCCccEEEccCccCcccCccc-cCCCCCCEEeccCCCCCcccCccccC--------C
Q 043910 136 LSGCSQLKRLPAEIL-------SAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPKGLCK--------L 199 (353)
Q Consensus 136 l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l~~~~~~~~l~~~~~~--------l 199 (353)
+++|...+..|..+. .+++|+.|++++|.++.+|..+ ..+++|++|++++|. ++.+|..+.. +
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTG
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccccccccc
Confidence 777766666666665 6678899999999888887754 458999999999865 5577754322 2
Q ss_pred CCCCEEEeeCccCCccCcccC--CCCCCcEEEeeCCCCcccchhHhhccCCceecccc------ccccccCCCC---CCC
Q 043910 200 KSLKFLILNGCGITQLPENLG--QLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSY------CERLQSLPKL---PCN 268 (353)
Q Consensus 200 ~~L~~L~l~~~~i~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~------~~~l~~l~~~---~~~ 268 (353)
++|+.|++++|.++.+|..+. .+++|+.|++++|.+..+|..+.++++|+.|++++ |...+.+|.. +++
T Consensus 488 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 389999999999999998887 89999999999999999998899999999999954 4445667754 478
Q ss_pred cceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 269 LKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 269 L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
|+.|++++|. ++.+|.... ++|+.|++++|+..+
T Consensus 568 L~~L~Ls~N~-l~~ip~~~~----~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 568 LTQLQIGSND-IRKVNEKIT----PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCEEECCSSC-CCBCCSCCC----TTCCEEECCSCTTCE
T ss_pred CCEEECCCCc-CCccCHhHh----CcCCEEECcCCCCcc
Confidence 9999999985 588876533 689999999996554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=215.35 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=77.8
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.+|++++....+.+++|.++++|++|++++|.+++. .+..+..+. |++|++++|.++.+|.. .+++|+.|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 128 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL------DFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDL 128 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE------CTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEEC
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcC------CHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEEC
Confidence 456777777777788889999999999999988642 234455555 99999999998888876 7889999999
Q ss_pred cCCCccccC--CCCcCCCCccEEecCCCc
Q 043910 88 PHSNIQQLG--DGGQHHCKLSQIITAARN 114 (353)
Q Consensus 88 ~~~~i~~l~--~~~~~~~~L~~L~l~~~~ 114 (353)
++|.++.++ ..+..+++|++|+++++.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCccccCchHhhcccCcccEEecCCCc
Confidence 999988765 467778888888888764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=214.29 Aligned_cols=260 Identities=18% Similarity=0.197 Sum_probs=181.6
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L 85 (353)
.+|++++....+.+.+|.++++|++|++++|.+.+ ..+..+..+. |++|++++|.+..++ .+..+++|++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccce------eChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 56777777777888899999999999999998854 2344555555 999999999987664 35588999999
Q ss_pred EccCCCcccc-CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCcc--EEEccC
Q 043910 86 EVPHSNIQQL-GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNME--EMILNG 162 (353)
Q Consensus 86 ~L~~~~i~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~ 162 (353)
++++|.++.+ +..+..+++|++|++++|.. +... .+.+..+++|++|++++|...+..+..+..+++|+ .|++++
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHI-SSIK-LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCC-CCCC-CCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcc-cccC-cccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 9999999886 45677889999999998753 3333 23445589999999999766655566788888888 788888
Q ss_pred ccCcccCccccCCC----------------------------------------------------CCCEEeccCCCCCc
Q 043910 163 TAIEELPSSIECLS----------------------------------------------------RLLHLGLRDCKRLK 190 (353)
Q Consensus 163 ~~i~~l~~~~~~l~----------------------------------------------------~L~~L~l~~~~~~~ 190 (353)
|.++.+++...... +|+++++++|. ++
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~ 267 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FF 267 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cC
Confidence 87775544322222 34455555533 23
Q ss_pred ccC-ccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccccccCCC----
Q 043910 191 SLP-KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCERLQSLPK---- 264 (353)
Q Consensus 191 ~l~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~---- 264 (353)
.++ ..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ +..+..+++|++|++++|.....++.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 333 346667777777777777777777777777777777777777644 34566677777777776654434432
Q ss_pred CCCCcceeecCCC
Q 043910 265 LPCNLKELDADHC 277 (353)
Q Consensus 265 ~~~~L~~L~l~~c 277 (353)
.+++|++|++++|
T Consensus 348 ~l~~L~~L~l~~n 360 (606)
T 3t6q_A 348 NLENLRELDLSHD 360 (606)
T ss_dssp TCTTCCEEECCSS
T ss_pred ccCcCCEEECCCC
Confidence 2355666666554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=201.39 Aligned_cols=220 Identities=21% Similarity=0.268 Sum_probs=157.1
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC-CCCCCCceEEEccCCCccccCCCCcCCCCc
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS-ITHPAKLVLLEVPHSNIQQLGDGGQHHCKL 105 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~-~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L 105 (353)
.++++.|++++|.+.. .+..+..+. |++|++++|.++.+|. +..+++|++|++++|.++.++..+..+++|
T Consensus 80 ~~~l~~L~L~~n~l~~-------lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-------FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSS-------CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCCchh-------cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 4678888888887742 223333333 8888888888777774 446788888888888887777777777888
Q ss_pred cEEecCCCcCcCCCCCC-------ccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCC
Q 043910 106 SQIITAARNFVTKTPNP-------SFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRL 178 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L 178 (353)
+.|++++|+.+...+.. ..+..+++|++|++++|.. ..+|..+..+++|++|++++|.++.+|..+..+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 88888877665544321 0133477788888877544 367777777778888888888777777777777788
Q ss_pred CEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccc
Q 043910 179 LHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSY 255 (353)
Q Consensus 179 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~ 255 (353)
++|++++|+..+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++++++|+.+++..
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 88888877777777777777777888888777554 56666777777788888777655 6777777777777777765
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=223.98 Aligned_cols=217 Identities=18% Similarity=0.224 Sum_probs=88.3
Q ss_pred cceEeecccCCC-CCCCCC-C-CCCceEEEccCCCccc-cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEe
Q 043910 60 IRYLFWHGYPLK-SLPSIT-H-PAKLVLLEVPHSNIQQ-LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135 (353)
Q Consensus 60 L~~L~l~~~~~~-~l~~~~-~-~~~L~~L~L~~~~i~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 135 (353)
|++|++++|.++ .+|... . +++|+.|++++|.+.+ ++..+..+++|+.|++++|.....++ ...+..+++|++|+
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLD 349 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEE
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEe
Confidence 444444444443 333221 2 2455555555555442 23334444555555555443211111 11244445555555
Q ss_pred ecCCCCCcccchhhhcCC-CccEEEccCccCc-ccCccccC--CCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCcc
Q 043910 136 LSGCSQLKRLPAEILSAG-NMEEMILNGTAIE-ELPSSIEC--LSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 136 l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~-~l~~~~~~--l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 211 (353)
+++|...+.+|..+..++ +|+.|++++|.++ .+|..+.. +++|++|++++|...+.+|..+..+++|+.|++++|.
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 555443334444333333 3333333333333 22222222 3334444444333222334344444444444444444
Q ss_pred CC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceeccccccccccCCCC---CCCcceeecCCC
Q 043910 212 IT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHC 277 (353)
Q Consensus 212 i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c 277 (353)
++ .+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|.. +++|+.|++++|
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 43 33334444444444444444444 33444444444444444444333333321 234444444444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-25 Score=211.59 Aligned_cols=257 Identities=15% Similarity=0.181 Sum_probs=156.5
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~ 86 (353)
+++++.....+++..|..+++|++|++++|.+.+. .+..+..+. |++|++++|.++.++. +..+++|+.|+
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34455555667788888999999999999988642 223444555 9999999999888774 34789999999
Q ss_pred ccCCCccccCCCC-cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCC-----------
Q 043910 87 VPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGN----------- 154 (353)
Q Consensus 87 L~~~~i~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----------- 154 (353)
+++|.++.++... ..+++|+.|++++|. ++... ...+..+++|++|++++|...+ ++ +..+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCC-TTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCC-hhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCcc
Confidence 9999998887764 678999999999875 33333 3467888899999998875433 22 222233
Q ss_pred --------ccEEEccCccCcccC--------------------ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEE
Q 043910 155 --------MEEMILNGTAIEELP--------------------SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLI 206 (353)
Q Consensus 155 --------L~~L~l~~~~i~~l~--------------------~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 206 (353)
|+.|++++|.++.++ ..+..+++|++|++++|...+..|..++.+++|+.|+
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 333333333333222 2344455555555555443333344455555555555
Q ss_pred eeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcceeecCCC
Q 043910 207 LNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHC 277 (353)
Q Consensus 207 l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 277 (353)
+++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.....-...+++|+.|+++++
T Consensus 285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred CCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCC
Confidence 55555555554444555555555555555555555555555555555554322211223445555555554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=204.23 Aligned_cols=203 Identities=18% Similarity=0.178 Sum_probs=150.8
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.+|++++...++. .|..+++|++|++++|.+++. + +..+. |++|++++|.++.++ +..+++|+.|++
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~--------~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL--------D-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC--------C-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE--------c-cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 3455655544543 578889999999999988652 1 33334 899999999888875 667889999999
Q ss_pred cCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcc
Q 043910 88 PHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEE 167 (353)
Q Consensus 88 ~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 167 (353)
++|.++.++ +..+++|++|++++|. ++.+ .++.+++|++|++++|..++.+ .+..+++|+.|++++|.++.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l----~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEI----DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCC----CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-ccee----ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 999888864 6778889999998874 3333 2667888888888887666665 36677888888888888887
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccc
Q 043910 168 LPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIP 239 (353)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~ 239 (353)
+| +..+++|++|++++|. ++.+ .++.+++|+.|++++|+++.+| +..+++|+.|++++|.+..++
T Consensus 185 l~--l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC--CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ec--cccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 76 6777888888888754 4444 2677788888888888887776 667778888888888776544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=216.95 Aligned_cols=280 Identities=17% Similarity=0.097 Sum_probs=226.8
Q ss_pred HhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCC
Q 043910 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC 103 (353)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~ 103 (353)
|..+++|++|++++|.+.. .+ .+.... |++|++++|.++.+|.+ .+++|+.|++++|...... ....++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~-------l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY-------LE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF-KKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC-------CC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC-CCCCCT
T ss_pred cccCCCCCEEEecCccchh-------hh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch-hhccCC
Confidence 7889999999999998743 12 333344 99999999999999977 8999999999999544322 556889
Q ss_pred CccEEecCCCcCcCCCC-CCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc--cccCCCCCCE
Q 043910 104 KLSQIITAARNFVTKTP-NPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS--SIECLSRLLH 180 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~ 180 (353)
+|+.|++++|.. +... ....+..+++|++|++++|. +..+|..+..+++|+.|++++|.++..++ .+..+++|++
T Consensus 351 ~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCE-EEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCEEECcCCcc-CCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 999999998853 2221 13467889999999999975 55577778899999999999999986644 7889999999
Q ss_pred EeccCCCCCcccCccccCCCCCCEEEeeCccCCc--cCcccCCCCCCcEEEeeCCCCccc-chhHhhccCCceecccccc
Q 043910 181 LGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQ--LPENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 181 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~ 257 (353)
|++++|......|..+..+++|++|++++|.++. +|..++.+++|+.|++++|.+..+ |..+.++++|+.|++++|.
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 9999987666677789999999999999999985 688899999999999999999855 5678899999999999986
Q ss_pred ccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhHHHHH
Q 043910 258 RLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDA 318 (353)
Q Consensus 258 ~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~ 318 (353)
..+..|. .+++|+.|++++|. ++.+|.. .....++|+.+++++++..++.....+..+.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI-LQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSC-CCCEESC-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred CCCcCHHHccCCCcCCEEECCCCc-CcccCHh-HhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 5544454 35789999999985 8888876 3333346999999999998887776665553
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-26 Score=221.24 Aligned_cols=286 Identities=16% Similarity=0.207 Sum_probs=201.6
Q ss_pred eCCCccccccCHHHHhcCCCCcEEEeeeCC-CCC-CccceeecCCCCCC-CccceEeecccCCCCCCC---CCCCCCceE
Q 043910 11 DMSKVEEIHLYSDTFTKMRKLRFLKFYNSS-ING-ENKCKVSNIQDPVF-PEIRYLFWHGYPLKSLPS---ITHPAKLVL 84 (353)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~---~~~~~~L~~ 84 (353)
+++++......+..|.++++|++|++++|. +++ ..|........+.. ..|++|++++|.++.+|. +..+++|+.
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCE
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCE
Confidence 344444334445667777777777777776 655 34332211101111 238888888888888876 557888888
Q ss_pred EEccCCCcc-ccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCcc-CcEEeecCCCCCcccchhhhcCC--CccEEEc
Q 043910 85 LEVPHSNIQ-QLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNK-LTILNLSGCSQLKRLPAEILSAG--NMEEMIL 160 (353)
Q Consensus 85 L~L~~~~i~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l 160 (353)
|++++|.++ .++ .+..+++|+.|++++|.. +.+ +..+..+++ |++|++++|... .+|..+..+. +|+.|++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l-~~l--p~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQI-TEI--PANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEE-EEC--CTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCcc-ccc--cHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEEC
Confidence 888888888 566 667778888888887753 333 235777788 888888886544 7777665544 7888888
Q ss_pred cCccCc-ccCcccc-------CCCCCCEEeccCCCCCcccCcc-ccCCCCCCEEEeeCccCCccCcccCC--------CC
Q 043910 161 NGTAIE-ELPSSIE-------CLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPENLGQ--------LF 223 (353)
Q Consensus 161 ~~~~i~-~l~~~~~-------~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~--------l~ 223 (353)
++|.++ .+|..+. .+++|++|++++|. ++.+|.. +..+++|+.|++++|.++.+|..... ++
T Consensus 410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred cCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence 888887 4555666 67788999998854 5567754 45688999999999998877765433 23
Q ss_pred CCcEEEeeCCCCcccchhHh--hccCCceeccccccccccCCCC---CCCcceeecCC------CcCccccCcccccccc
Q 043910 224 SLEEFCLRKTKFEKIPTNVI--HLSRLHSFCLSYCERLQSLPKL---PCNLKELDADH------CAALESLSDLFSISYD 292 (353)
Q Consensus 224 ~L~~L~l~~~~l~~l~~~l~--~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~------c~~l~~~~~~~~~~~~ 292 (353)
+|+.|++++|.+..+|..+. .+++|+.|++++|.. +.+|.. +++|+.|++++ +.-.+.+|.... .+
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~--~l 565 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT--LC 565 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG--GC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CCcChhhhcCCCCCEEECCCCcccccCcccccChHHHh--cC
Confidence 89999999999998888876 899999999999654 447753 57899999954 433445554333 37
Q ss_pred ccccEEEecCCcc
Q 043910 293 YYIRCFELSTNYK 305 (353)
Q Consensus 293 ~~l~~l~~~~c~~ 305 (353)
++|+.|++++|.-
T Consensus 566 ~~L~~L~Ls~N~l 578 (636)
T 4eco_A 566 PSLTQLQIGSNDI 578 (636)
T ss_dssp SSCCEEECCSSCC
T ss_pred CCCCEEECCCCcC
Confidence 8899999999954
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=192.75 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=122.9
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCcccc-CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQL-GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|++++|.++.++. +..+++|++|++++|.++.+ +..+..+++|++|++++|. ++.++. .+ .++|++|++
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~--~~--~~~L~~L~l 128 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPE--KM--PKTLQELRV 128 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCS--SC--CTTCCEEEC
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccCh--hh--cccccEEEC
Confidence 6666666666665553 33556666666666666554 3445556666666666553 222221 11 145666666
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCc---ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIE---ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 213 (353)
++|...+..+..+..+++|+.|++++|.++ ..+..+..+++|++|++++| .++.+|..+. ++|+.|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCC
Confidence 665443333334555666666666666554 22334555666666666653 2444444322 55666666666655
Q ss_pred cc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCCC---CCCcceeecCCCcCccccCcccc
Q 043910 214 QL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPKL---PCNLKELDADHCAALESLSDLFS 288 (353)
Q Consensus 214 ~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~ 288 (353)
.+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++| .++.+|.. +++|+.|++++| .++.++...+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhc
Confidence 43 3445555666666666666554332 4555566666666654 33344432 245566666654 3555544333
Q ss_pred cc-----ccccccEEEecCCcc
Q 043910 289 IS-----YDYYIRCFELSTNYK 305 (353)
Q Consensus 289 ~~-----~~~~l~~l~~~~c~~ 305 (353)
.. ....++.+++.+++.
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSS
T ss_pred CCcccccccccccceEeecCcc
Confidence 21 123455556655543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=194.72 Aligned_cols=235 Identities=13% Similarity=0.144 Sum_probs=122.4
Q ss_pred cceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
|++|++++|.++.++ .+..+++|+.|++++|.+..++.... ++|++|++++|. ++..+ ...+..+++|++|+++
T Consensus 80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECC
T ss_pred CcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccC-HhHhCCCccCCEEECC
Confidence 555555555555442 23345555555555555555444333 555555555543 22221 1235555666666666
Q ss_pred CCCCCc--ccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc
Q 043910 138 GCSQLK--RLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL 215 (353)
Q Consensus 138 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~ 215 (353)
+|.... ..+..+..+ +|+.|++++|.++.+|..+. ++|++|++++|......+..+..+++|+.|++++|.++.+
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 544321 233334444 56666666666655554432 5666666666443333334566666677777777666654
Q ss_pred Cc-ccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCC----------CCCcceeecCCCcCcc-cc
Q 043910 216 PE-NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKL----------PCNLKELDADHCAALE-SL 283 (353)
Q Consensus 216 ~~-~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~----------~~~L~~L~l~~c~~l~-~~ 283 (353)
+. .+..+++|+.|++++|.+..+|..+..+++|+.|++++|. ++.++.. ...|+.|++.+++-.. .+
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccccccc
Confidence 43 4566666777777777666666666666677777776643 3333310 2346666666664321 22
Q ss_pred CccccccccccccEEEecCC
Q 043910 284 SDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 284 ~~~~~~~~~~~l~~l~~~~c 303 (353)
+... ...++.++.+++++|
T Consensus 312 ~~~~-~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 312 QPAT-FRCVTDRLAIQFGNY 330 (332)
T ss_dssp CGGG-GTTBCCSTTEEC---
T ss_pred Cccc-ccccchhhhhhcccc
Confidence 2221 123555666666655
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=207.84 Aligned_cols=291 Identities=13% Similarity=0.080 Sum_probs=176.8
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCC--C-CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSL--P-SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~-~~~~~~~L~~L 85 (353)
.++++++....+.+++|.++++|++|++++|.++. . +.. ....|++|++++|.++.+ | .+..+++|+.|
T Consensus 49 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l------p~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 49 ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-I------SCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp EEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-E------ECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred EEecCCCccCCcChHHhhcccCCCEEecCCCceee-c------Ccc-ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 45677777777778899999999999999999863 2 222 334499999999998864 4 45578999999
Q ss_pred EccCCCccccCCCCcCCCCc--cEEecCCCcC--cCCC----CC--------------------CccccCC---------
Q 043910 86 EVPHSNIQQLGDGGQHHCKL--SQIITAARNF--VTKT----PN--------------------PSFIRSL--------- 128 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~~~~L--~~L~l~~~~~--l~~~----~~--------------------~~~~~~l--------- 128 (353)
++++|.+... .+..+++| +.|++++|.. .... .. ...+..+
T Consensus 121 ~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 121 GLSTTHLEKS--SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp EEEESSCCGG--GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred EecCcccchh--hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 9999988652 33445555 6666665533 0000 00 0000111
Q ss_pred ------------------------------------------------ccCcEEeecCCCCCcccchhh-----------
Q 043910 129 ------------------------------------------------NKLTILNLSGCSQLKRLPAEI----------- 149 (353)
Q Consensus 129 ------------------------------------------------~~L~~L~l~~~~~~~~~~~~~----------- 149 (353)
++|++|++++|...+.+|..+
T Consensus 199 ~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp ECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred ccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence 134444444433322333322
Q ss_pred ------------------------------------------hcCCCccEEEccCccCcc-cCccccCCCCCCEEeccCC
Q 043910 150 ------------------------------------------LSAGNMEEMILNGTAIEE-LPSSIECLSRLLHLGLRDC 186 (353)
Q Consensus 150 ------------------------------------------~~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~ 186 (353)
..+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358 (520)
T ss_dssp EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS
T ss_pred EeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC
Confidence 344555666666665553 4555555666666666654
Q ss_pred CCCc--ccCccccCCCCCCEEEeeCccCCc-cCcc-cCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccccccccc
Q 043910 187 KRLK--SLPKGLCKLKSLKFLILNGCGITQ-LPEN-LGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQS 261 (353)
Q Consensus 187 ~~~~--~l~~~~~~l~~L~~L~l~~~~i~~-~~~~-~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~ 261 (353)
...+ .+|..+..+++|++|++++|.++. +|.. +..+++|++|++++|.+. .++..+. ++|+.|++++| .++.
T Consensus 359 ~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ 435 (520)
T 2z7x_B 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKS 435 (520)
T ss_dssp CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCC
T ss_pred ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccc
Confidence 3322 233445566666666666666654 5543 455566666666666654 3333221 56777777765 3456
Q ss_pred CCC---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhH
Q 043910 262 LPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSI 314 (353)
Q Consensus 262 l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~ 314 (353)
+|. .+++|+.|++++| .++.++.. ....+++|+.+++++++.-++......
T Consensus 436 ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred cchhhhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCCCcccCCchHH
Confidence 665 3467888888887 57777765 223467899999999988887776665
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=202.69 Aligned_cols=169 Identities=21% Similarity=0.279 Sum_probs=86.4
Q ss_pred ccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
+..+++|++|++++|...+..+ +..+++|+.|++++|.++.++ .+..+++|++|++++|. +..++. +..+++|+.
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~ 269 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTE 269 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSE
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCE
Confidence 3344444444444433222211 334455555555555554442 34455556666665543 222332 555666666
Q ss_pred EEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCC-CCCCCcceeecCCCcCcccc
Q 043910 205 LILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP-KLPCNLKELDADHCAALESL 283 (353)
Q Consensus 205 L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~L~~L~l~~c~~l~~~ 283 (353)
|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|+.|++++|...+..+ ..+++|+.|++++| .++.+
T Consensus 270 L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 270 LKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred EECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCc
Confidence 6666666655544 5556666666666666665444 4566666666666653222111 13456666666665 34444
Q ss_pred CccccccccccccEEEecCCc
Q 043910 284 SDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 284 ~~~~~~~~~~~l~~l~~~~c~ 304 (353)
+. ...+++|+.+++++|.
T Consensus 347 ~~---l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 347 SS---LANLTNINWLSAGHNQ 364 (466)
T ss_dssp GG---GTTCTTCCEEECCSSC
T ss_pred hh---hccCCCCCEEeCCCCc
Confidence 21 2334566666666663
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=213.51 Aligned_cols=286 Identities=14% Similarity=0.118 Sum_probs=208.8
Q ss_pred EeCCCccccccCH-HHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC-CCCCCC-ceEE
Q 043910 10 LDMSKVEEIHLYS-DTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS-ITHPAK-LVLL 85 (353)
Q Consensus 10 l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~-~~~~~~-L~~L 85 (353)
++++++....++. ..|.++++|++|++++|.++ .. + .+..++ |+.|++++|.+..+|. +..+++ |+.|
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l------p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL------E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BC------C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cc------h-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence 3444444444443 46777888888888887774 22 2 344444 8888888888887774 446777 8888
Q ss_pred EccCCCccccCCCCcCCC--CccEEecCCCcCcCCCCCCc-ccc--CCccCcEEeecCCCCCcccchhhh-cCCCccEEE
Q 043910 86 EVPHSNIQQLGDGGQHHC--KLSQIITAARNFVTKTPNPS-FIR--SLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMI 159 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~~~--~L~~L~l~~~~~l~~~~~~~-~~~--~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ 159 (353)
++++|.++.++..+.... +|+.|++++|......+..+ .+. .+++|++|++++|... .+|..+. .+++|+.|+
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTII 703 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEE
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEE
Confidence 888888887776555543 48888888875432222111 222 3458999999997655 7776654 789999999
Q ss_pred ccCccCcccCccccCC--------CCCCEEeccCCCCCcccCcccc--CCCCCCEEEeeCccCCccCcccCCCCCCcEEE
Q 043910 160 LNGTAIEELPSSIECL--------SRLLHLGLRDCKRLKSLPKGLC--KLKSLKFLILNGCGITQLPENLGQLFSLEEFC 229 (353)
Q Consensus 160 l~~~~i~~l~~~~~~l--------~~L~~L~l~~~~~~~~l~~~~~--~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 229 (353)
+++|.++.+|..+... ++|++|++++| .++.+|..+. .+++|+.|++++|.++.+|..+..+++|+.|+
T Consensus 704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782 (876)
T ss_dssp CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEE
T ss_pred CCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEE
Confidence 9999999888765443 38999999996 4668898776 99999999999999999999999999999999
Q ss_pred eeC------CCCc-ccchhHhhccCCceeccccccccccCCC-CCCCcceeecCCCcCccccCcccccc-------cccc
Q 043910 230 LRK------TKFE-KIPTNVIHLSRLHSFCLSYCERLQSLPK-LPCNLKELDADHCAALESLSDLFSIS-------YDYY 294 (353)
Q Consensus 230 l~~------~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~~~~-------~~~~ 294 (353)
+++ |.+. .+|..+.++++|+.|++++|.. +.+|. ..++|+.|++++|+ +..+....+.. .+..
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~ 860 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLY 860 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEEC
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC-CCccChHHccccccchheeecC
Confidence 987 5555 7888999999999999999865 88887 45789999999986 54444333221 1111
Q ss_pred ccEEEecCCccCc
Q 043910 295 IRCFELSTNYKLD 307 (353)
Q Consensus 295 l~~l~~~~c~~l~ 307 (353)
....++.+|+.+.
T Consensus 861 n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 861 DKTQDIRGCDALG 873 (876)
T ss_dssp CTTSEEESCGGGC
T ss_pred CCccccCCCCCcc
Confidence 2234677888765
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=213.10 Aligned_cols=134 Identities=16% Similarity=0.052 Sum_probs=93.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.+|++++....+.+.+|.++++|++|++++|.+++. .+..+..+. |++|++++|.++.++. +..+++|++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI------EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCcc------ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 456666666667677888899999999999888642 223444455 8999999998887774 5578889999
Q ss_pred EccCCCcccc--CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh
Q 043910 86 EVPHSNIQQL--GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI 149 (353)
Q Consensus 86 ~L~~~~i~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 149 (353)
++++|.++.+ +..+..+++|++|++++|..++.++ ...+..+++|++|++++|...+..|..+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhh
Confidence 9998888754 4566778888888888876444432 2345666677777776665544444333
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=198.58 Aligned_cols=247 Identities=16% Similarity=0.167 Sum_probs=201.1
Q ss_pred CCCcEEEeeeCCCCC--CccceeecCCCCCCCc-cceEeecc-cCCC-CCC-CCCCCCCceEEEccCCCcc-ccCCCCcC
Q 043910 29 RKLRFLKFYNSSING--ENKCKVSNIQDPVFPE-IRYLFWHG-YPLK-SLP-SITHPAKLVLLEVPHSNIQ-QLGDGGQH 101 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~-L~~L~l~~-~~~~-~l~-~~~~~~~L~~L~L~~~~i~-~l~~~~~~ 101 (353)
.++++|++++|.+.+ ..+ ..+..++ |++|++++ +.+. .+| .+..+++|++|++++|.+. .++..+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~------~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP------SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC------GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccC------hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 578999999998876 333 3344444 99999995 7655 556 3558899999999999998 56677888
Q ss_pred CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCC-CccEEEccCccCc-ccCccccCCCCCC
Q 043910 102 HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAG-NMEEMILNGTAIE-ELPSSIECLSRLL 179 (353)
Q Consensus 102 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~-~l~~~~~~l~~L~ 179 (353)
+++|++|++++|...... +..+..+++|++|++++|...+.+|..+..++ +|+.|++++|.++ .+|..+..++ |+
T Consensus 124 l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp CTTCCEEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred CCCCCEEeCCCCccCCcC--ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 999999999988542222 35788899999999999877778888898888 9999999999998 7788888887 99
Q ss_pred EEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceeccccccc
Q 043910 180 HLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 180 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
+|++++|......|..+..+++|+.|++++|.++..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|..
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 999999765556777888999999999999999865555888899999999999998 7888899999999999999877
Q ss_pred cccCCCC--CCCcceeecCCCcCccccC
Q 043910 259 LQSLPKL--PCNLKELDADHCAALESLS 284 (353)
Q Consensus 259 l~~l~~~--~~~L~~L~l~~c~~l~~~~ 284 (353)
.+.+|.. +++|+.+++.+++.+...|
T Consensus 281 ~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 281 CGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred cccCCCCccccccChHHhcCCCCccCCC
Confidence 7677764 4678888898887666543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=198.91 Aligned_cols=213 Identities=26% Similarity=0.362 Sum_probs=169.4
Q ss_pred ccceEeecccCCCCCCC-CCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 59 EIRYLFWHGYPLKSLPS-ITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 59 ~L~~L~l~~~~~~~l~~-~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
.++.|+++++.++.+|. +..+++|++|++++|.++.++..+..+++|++|++++|. ++.+ +..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~l--p~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRAL--PASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCC--CGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccC--cHHHhcCcCCCEEECC
Confidence 38889999998888884 557889999999999888888878888899999998874 3333 3468888899999999
Q ss_pred CCCCCcccchhhhc---------CCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEee
Q 043910 138 GCSQLKRLPAEILS---------AGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILN 208 (353)
Q Consensus 138 ~~~~~~~~~~~~~~---------~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 208 (353)
+|+..+.+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|. ++.+|..+..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECc
Confidence 88888888776654 888888888888888888888888888888888854 55677778888888888888
Q ss_pred CccCC-ccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceeccccccccccCCCCC---CCcceeecC
Q 043910 209 GCGIT-QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQSLPKLP---CNLKELDAD 275 (353)
Q Consensus 209 ~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~---~~L~~L~l~ 275 (353)
+|.+. .+|..++.+++|+.|++++|.+. .+|..+.++++|+.|++++|+.++.+|..+ ++|+.+++.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 88665 67777888888888888888765 777778888888888888888888888754 344444444
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=202.79 Aligned_cols=266 Identities=16% Similarity=0.111 Sum_probs=199.7
Q ss_pred EeCCCcccc-ccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCC--CCC--CCCCCCce
Q 043910 10 LDMSKVEEI-HLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKS--LPS--ITHPAKLV 83 (353)
Q Consensus 10 l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~--l~~--~~~~~~L~ 83 (353)
++++++... .+.+++|.++++|++|++++|.+++. .+..+..+. |++|++++|.++. ++. +..+++|+
T Consensus 59 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp EECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred EECcCCcccceECcccccccccCCEEeCCCCccCcc------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 455555433 55677888999999999999988542 234455455 9999999998775 222 55788999
Q ss_pred EEEccCCCccccCCC--CcCCCCccEEecCCCcCcCCCCCCcc----------------------------------ccC
Q 043910 84 LLEVPHSNIQQLGDG--GQHHCKLSQIITAARNFVTKTPNPSF----------------------------------IRS 127 (353)
Q Consensus 84 ~L~L~~~~i~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~----------------------------------~~~ 127 (353)
.|++++|.+..+.+. +..+++|++|++++|.. +... ... +..
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSIC-EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SCCC-TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcc-cccC-hhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 999999998877443 56788999999988753 2221 111 224
Q ss_pred CccCcEEeecCCCCCcccchhhhc---------------------------------------CCCccEEEccCccCcc-
Q 043910 128 LNKLTILNLSGCSQLKRLPAEILS---------------------------------------AGNMEEMILNGTAIEE- 167 (353)
Q Consensus 128 l~~L~~L~l~~~~~~~~~~~~~~~---------------------------------------~~~L~~L~l~~~~i~~- 167 (353)
+++|++|++++|...+..|..+.. .++|+.|++++|.++.
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 468999999998765544433321 2579999999999985
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCccc-chhHhhc
Q 043910 168 LPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKI-PTNVIHL 245 (353)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l 245 (353)
.|..+..+++|++|++++|...+..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+..+ |..+..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 466788999999999999765555566889999999999999999866 56788999999999999999965 6688899
Q ss_pred cCCceeccccccccccCCC----CCCCcceeecCCCcCccccC
Q 043910 246 SRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLS 284 (353)
Q Consensus 246 ~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~ 284 (353)
++|++|++++|. ++.+|. .+++|+.|++++++--.+.+
T Consensus 371 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999964 555554 35789999999886544444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=192.14 Aligned_cols=262 Identities=16% Similarity=0.159 Sum_probs=203.0
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCC-C-CCCCCCCceEEEccCCCccccCCCCcCCCC
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSL-P-SITHPAKLVLLEVPHSNIQQLGDGGQHHCK 104 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l-~-~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~ 104 (353)
.+++++|++++|.+++.. ...+.... |++|++++|.++.+ | .+..+++|+.|++++|.++.++.... ++
T Consensus 51 ~~~l~~L~L~~n~i~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIK------DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp CTTCCEEECCSSCCCCBC------TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCCeEEECCCCcCCEeC------hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 368999999999986532 22344444 99999999999887 4 35588999999999999998876554 89
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCc--ccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEe
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLK--RLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLG 182 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 182 (353)
|+.|++++|. ++... ...+..+++|++|++++|.... ..+..+..+++|++|++++|.++.+|..+. ++|++|+
T Consensus 123 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 123 LQELRVHENE-ITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELH 198 (330)
T ss_dssp CCEEECCSSC-CCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEE
T ss_pred ccEEECCCCc-ccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEE
Confidence 9999999874 33332 2357889999999999976643 456678889999999999999999887654 8999999
Q ss_pred ccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccccccc
Q 043910 183 LRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQS 261 (353)
Q Consensus 183 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~ 261 (353)
+++|......+..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+..+|..+..+++|++|++++|. ++.
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~ 277 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISA 277 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCc
Confidence 99976444446788999999999999999997654 6888999999999999999999989999999999999964 555
Q ss_pred CCC-C---------CCCcceeecCCCcCcc-ccCccccccccccccEEEecCC
Q 043910 262 LPK-L---------PCNLKELDADHCAALE-SLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 262 l~~-~---------~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~l~~l~~~~c 303 (353)
++. . ...++.+++.+++--. .++... ...+..++.++++++
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~-f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST-FRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG-GTTCCCGGGEEC---
T ss_pred cChhhcCCcccccccccccceEeecCcccccccCccc-cccccceeEEEeccc
Confidence 542 1 2578899999886322 122222 233567788888765
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=206.10 Aligned_cols=165 Identities=19% Similarity=0.135 Sum_probs=104.8
Q ss_pred hhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCc-cCcccCCCCCCc
Q 043910 149 ILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQ-LPENLGQLFSLE 226 (353)
Q Consensus 149 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~ 226 (353)
+..+++|++|++++|.++.++..+..+++|++|++++|......+ ..+..+++|++|++++|.+.. .|..+..+++|+
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 334444555555555554444445556666666666544332223 245667777777777777663 455667777888
Q ss_pred EEEeeCCCCc--ccchhHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCccccccccccccEEEec
Q 043910 227 EFCLRKTKFE--KIPTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELS 301 (353)
Q Consensus 227 ~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~ 301 (353)
.|++++|.+. .+|..+..+++|+.|++++|......|. .+++|+.|++++| .++.++...+ ..+++|+.++++
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~ 526 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLH 526 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECC
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEec
Confidence 8888888775 4666777788888888888754444343 3467888888887 4666654433 346788999999
Q ss_pred CCccCchHHHHhHH
Q 043910 302 TNYKLDRNELRSIL 315 (353)
Q Consensus 302 ~c~~l~~~~~~~~~ 315 (353)
+++.-+........
T Consensus 527 ~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 527 TNPWDCSCPRIDYL 540 (570)
T ss_dssp SSCBCCCTTTTHHH
T ss_pred CCcccCCCcchHHH
Confidence 98777665544433
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=207.24 Aligned_cols=184 Identities=22% Similarity=0.181 Sum_probs=98.4
Q ss_pred cccCCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCcc---------------------------cCccccCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEE---------------------------LPSSIECL 175 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~---------------------------l~~~~~~l 175 (353)
.+..+++|++|++++|...+.++ ..+..+++|++|++++|.++. +|..+..+
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 45556666666666655444443 344555555555555555442 23344455
Q ss_pred CCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc---------ccCCCCCCcEEEeeCCCCcccch-hHhh
Q 043910 176 SRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE---------NLGQLFSLEEFCLRKTKFEKIPT-NVIH 244 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~---------~~~~l~~L~~L~l~~~~l~~l~~-~l~~ 244 (353)
++|++|++++|. ++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..+|. .+.+
T Consensus 480 ~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 480 RNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 555555555533 23333 335555566666666665553311 14555666666666666665554 3556
Q ss_pred ccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH
Q 043910 245 LSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 245 l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
+++|+.|++++| .++.+|. .+++|+.|+++++ .++.++...+....++++.+++++++..++..
T Consensus 559 l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 559 LFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 666666666653 3444443 2356666666665 45555543332234566777777766665543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=196.36 Aligned_cols=244 Identities=18% Similarity=0.178 Sum_probs=198.9
Q ss_pred EEeCCCccccc--cCHHHHhcCCCCcEEEeee-CCCCCCccceeecCCCCCCCc-cceEeecccCCC-CCCC-CCCCCCc
Q 043910 9 CLDMSKVEEIH--LYSDTFTKMRKLRFLKFYN-SSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLK-SLPS-ITHPAKL 82 (353)
Q Consensus 9 ~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~-~l~~-~~~~~~L 82 (353)
.++++++.... ..+..|.++++|++|++++ |.+.+..+. .+..++ |++|++++|.++ .+|. +..+++|
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP------AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG------GGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh------hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 34455554443 4567899999999999995 887665442 333344 999999999987 6664 5589999
Q ss_pred eEEEccCCCcc-ccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCc-cCcEEeecCCCCCcccchhhhcCCCccEEEc
Q 043910 83 VLLEVPHSNIQ-QLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN-KLTILNLSGCSQLKRLPAEILSAGNMEEMIL 160 (353)
Q Consensus 83 ~~L~L~~~~i~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 160 (353)
++|++++|.+. .++..+..+++|++|++++|...... +..+..++ +|++|++++|...+..|..+..+. |+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 99999999998 46677888999999999998542122 34677887 999999999887778888888887 999999
Q ss_pred cCccCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc-c
Q 043910 161 NGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE-K 237 (353)
Q Consensus 161 ~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~-~ 237 (353)
++|.++ ..|..+..+++|++|++++|......|. +..+++|++|++++|.++ .+|..+..+++|+.|++++|++. .
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 999998 5667788999999999999765444444 788999999999999998 78888999999999999999998 6
Q ss_pred cchhHhhccCCceeccccccccccCC
Q 043910 238 IPTNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 238 l~~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
+|.. ..+++|+.+++++|+.+...|
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCC-ccccccChHHhcCCCCccCCC
Confidence 7765 889999999999998776544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=204.64 Aligned_cols=291 Identities=17% Similarity=0.118 Sum_probs=200.8
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC---CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP---SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~---~~~~~~~L~~L 85 (353)
.++++++....+.+++|.++++|++|++++|.++. .+.. ....|++|++++|.++.++ .+..+++|+.|
T Consensus 80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-------ISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-------ECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-------cCcc-ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence 45677777778888999999999999999999852 2222 3344999999999998765 35588999999
Q ss_pred EccCCCccccCCCCcCCCCc--cEEecCCCcCc-CCCCCCccc--------------------------cCCc-------
Q 043910 86 EVPHSNIQQLGDGGQHHCKL--SQIITAARNFV-TKTPNPSFI--------------------------RSLN------- 129 (353)
Q Consensus 86 ~L~~~~i~~l~~~~~~~~~L--~~L~l~~~~~l-~~~~~~~~~--------------------------~~l~------- 129 (353)
++++|.++.. .+..+++| +.|++++|... +... ...+ ..++
T Consensus 152 ~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~-~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 228 (562)
T 3a79_B 152 GLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGE-TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228 (562)
T ss_dssp EEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSS-CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred ecCCCccccC--chhhhhhceeeEEEeecccccccccC-cccccccCcceEEEEecCccchhhhhhhcccccceEEEecc
Confidence 9999998753 34445555 88887776430 1110 0111 1122
Q ss_pred ------------------------------------------------cCcEEeecCCCCCcccchhh------------
Q 043910 130 ------------------------------------------------KLTILNLSGCSQLKRLPAEI------------ 149 (353)
Q Consensus 130 ------------------------------------------------~L~~L~l~~~~~~~~~~~~~------------ 149 (353)
+|++|++++|...+.+|..+
T Consensus 229 ~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 45555555544333333322
Q ss_pred -----------------------------------------hcCCCccEEEccCccCcc-cCccccCCCCCCEEeccCCC
Q 043910 150 -----------------------------------------LSAGNMEEMILNGTAIEE-LPSSIECLSRLLHLGLRDCK 187 (353)
Q Consensus 150 -----------------------------------------~~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~ 187 (353)
..+++|++|++++|.++. +|..+..+++|++|++++|.
T Consensus 309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 456678888888887774 66677778888888888754
Q ss_pred CCccc---CccccCCCCCCEEEeeCccCCc-cCcc-cCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccccccccc
Q 043910 188 RLKSL---PKGLCKLKSLKFLILNGCGITQ-LPEN-LGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQS 261 (353)
Q Consensus 188 ~~~~l---~~~~~~l~~L~~L~l~~~~i~~-~~~~-~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~ 261 (353)
++.+ |..+..+++|+.|++++|.++. +|.. +..+++|++|++++|.+. .++..+. ++|+.|++++| .++.
T Consensus 389 -l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 389 -LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS 464 (562)
T ss_dssp -CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC
T ss_pred -cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc
Confidence 4433 3456778888888888888775 6653 667788888888888876 3343322 68889999886 5667
Q ss_pred CCCC---CCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhHHH
Q 043910 262 LPKL---PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILE 316 (353)
Q Consensus 262 l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~ 316 (353)
+|.. +++|+.|+++++ .++.++.. ....+++|+.+++++++.-++........
T Consensus 465 ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp CCTTTTSSCCCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred cChhhcCCCCCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 7763 478999999987 57788766 23456789999999999888877666544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=207.41 Aligned_cols=239 Identities=16% Similarity=0.117 Sum_probs=197.5
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|+.++++++.++.+|.+..+++|+.|++++|.+..++ .+ .+++|+.|++++|..+... .+..+++|++|++++|
T Consensus 287 L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRN 360 (606)
T ss_dssp CSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSS
T ss_pred CCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch----hhccCCCCCEEECcCC
Confidence 8899999999998887778899999999999998777 44 8999999999998654432 4668899999999997
Q ss_pred CCCcc--cchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCc-c
Q 043910 140 SQLKR--LPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQ-L 215 (353)
Q Consensus 140 ~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~-~ 215 (353)
...+. .+..+..+++|++|++++|.++.+|..+..+++|++|++++|...+..| ..+..+++|+.|++++|.+.. .
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 65443 3777889999999999999999999889999999999999976555555 478899999999999999884 6
Q ss_pred CcccCCCCCCcEEEeeCCCCcc--cchhHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCcccccc
Q 043910 216 PENLGQLFSLEEFCLRKTKFEK--IPTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSIS 290 (353)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~ 290 (353)
|..+..+++|++|++++|.+.. +|..+..+++|+.|++++|...+..|. .+++|++|++++|. ++.+....+ .
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~ 518 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHY-N 518 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGT-T
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHc-c
Confidence 6778999999999999999884 677889999999999999865544444 35789999999984 555533222 3
Q ss_pred ccccccEEEecCCccCc
Q 043910 291 YDYYIRCFELSTNYKLD 307 (353)
Q Consensus 291 ~~~~l~~l~~~~c~~l~ 307 (353)
.+++|+.|++++|. ++
T Consensus 519 ~l~~L~~L~l~~N~-l~ 534 (606)
T 3vq2_A 519 QLYSLSTLDCSFNR-IE 534 (606)
T ss_dssp TCTTCCEEECTTSC-CC
T ss_pred CCCcCCEEECCCCc-Cc
Confidence 46789999999994 44
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=192.65 Aligned_cols=259 Identities=18% Similarity=0.214 Sum_probs=199.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.++++++....+.+++|.++++|++|++++|.+++.. +..+..+. |++|++++|.++.+|.... ++|+.|++
T Consensus 58 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l 130 (332)
T 2ft3_A 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH------EKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRI 130 (332)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------GGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEEC
T ss_pred EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC------HhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEEC
Confidence 3567777767777888999999999999999986432 33344444 9999999999999886554 89999999
Q ss_pred cCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc
Q 043910 88 PHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE 166 (353)
Q Consensus 88 ~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 166 (353)
++|.++.++.. +..+++|+.|++++|..-........+..+ +|++|++++|. +..+|..+. ++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCC
Confidence 99999988764 567999999999988542111223456666 99999999965 445665443 79999999999999
Q ss_pred ccC-ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchh-Hhh
Q 043910 167 ELP-SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTN-VIH 244 (353)
Q Consensus 167 ~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~ 244 (353)
.++ ..+..+++|++|++++|......+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.++.. +..
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 765 578899999999999965444444578899999999999999999999899999999999999999877642 222
Q ss_pred ------ccCCceeccccccccc-cCC-C---CCCCcceeecCCCc
Q 043910 245 ------LSRLHSFCLSYCERLQ-SLP-K---LPCNLKELDADHCA 278 (353)
Q Consensus 245 ------l~~L~~L~l~~~~~l~-~l~-~---~~~~L~~L~l~~c~ 278 (353)
.+.|+.+++++|+... .++ . .+++|+.+++++++
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4678999999986431 222 2 34678888888764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=200.23 Aligned_cols=157 Identities=20% Similarity=0.153 Sum_probs=92.2
Q ss_pred cCCCccEEEccCccCcc-cC---ccccCCCCCCEEeccCCCCCcccC---ccccCCCCCCEEEeeCccCCccCcccCCCC
Q 043910 151 SAGNMEEMILNGTAIEE-LP---SSIECLSRLLHLGLRDCKRLKSLP---KGLCKLKSLKFLILNGCGITQLPENLGQLF 223 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~-l~---~~~~~l~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~ 223 (353)
.+++|++|++++|.++. +| ..+..+++|++|++++|. ++.++ ..+..+++|++|++++|.++.+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence 45566666666665552 22 124455556666665533 33322 234455555555555555555555555555
Q ss_pred CCcEEEeeCCCCcccchhH------------------hhccCCceeccccccccccCCC--CCCCcceeecCCCcCcccc
Q 043910 224 SLEEFCLRKTKFEKIPTNV------------------IHLSRLHSFCLSYCERLQSLPK--LPCNLKELDADHCAALESL 283 (353)
Q Consensus 224 ~L~~L~l~~~~l~~l~~~l------------------~~l~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~l~~~ 283 (353)
+|++|++++|.+..++..+ ..+++|+.|++++| .++.+|. .+++|+.|++++| .++.+
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~ 488 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSV 488 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCC
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCc
Confidence 5555555555544333221 35677888888876 4556665 3577888888887 46666
Q ss_pred CccccccccccccEEEecCCccCchHHH
Q 043910 284 SDLFSISYDYYIRCFELSTNYKLDRNEL 311 (353)
Q Consensus 284 ~~~~~~~~~~~l~~l~~~~c~~l~~~~~ 311 (353)
+.... ..+++|+.+++++|+..++...
T Consensus 489 ~~~~~-~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 489 PDGIF-DRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CTTGG-GGCTTCCEEECCSSCBCCCHHH
T ss_pred CHHHH-hcCcccCEEEecCCCccCCCcc
Confidence 55432 3467899999999988777663
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=195.41 Aligned_cols=211 Identities=18% Similarity=0.258 Sum_probs=158.9
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+++|+.|++++|.+..++ .+..+++|+.|++++|. ++ ....++.+++|++|++++|.. ..++ .+..+++|+.|
T Consensus 176 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~---~~~~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L 248 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ-IS---DITPLGILTNLDELSLNGNQL-KDIG-TLASLTNLTDL 248 (466)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CC---CCGGGGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEE
T ss_pred CCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCc-cc---ccccccccCCCCEEECCCCCc-ccch-hhhcCCCCCEE
Confidence 444555555555554442 24455666666666653 22 223477889999999999754 3444 47889999999
Q ss_pred EccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCccc
Q 043910 159 ILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 159 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l 238 (353)
++++|.++.+++ +..+++|++|++++|. +..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..+
T Consensus 249 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 249 DLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred ECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 999999997765 7889999999999864 555555 7889999999999999998776 78899999999999999876
Q ss_pred chhHhhccCCceeccccccccccCCC--CCCCcceeecCCCcCccccCccccccccccccEEEecCCccC
Q 043910 239 PTNVIHLSRLHSFCLSYCERLQSLPK--LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKL 306 (353)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l 306 (353)
+. +..+++|+.|++++|. ++.++. .+++|+.|++++|. +++.+. ...+++|+.+++.+|+..
T Consensus 325 ~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 325 SP-VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEEEE
T ss_pred hh-hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCccc
Confidence 65 6789999999999974 444443 45789999999985 555544 345688999999998543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=202.03 Aligned_cols=304 Identities=20% Similarity=0.185 Sum_probs=210.5
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.+|++++....+.+.+|.++++|++|++++|.+++. .+..+..+. |++|+|++|+++.+|. +..+++|++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc------ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 567788877788888999999999999999988542 233455555 9999999999988874 4578999999
Q ss_pred EccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh---------------
Q 043910 86 EVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI--------------- 149 (353)
Q Consensus 86 ~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------- 149 (353)
++++|.++.++.. +..+++|++|++++|. ++.......++.+++|++|++++|...+..+..+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999999888754 5678999999999874 3334434567788888888888864322111110
Q ss_pred --------------------------------------------------------------------------------
Q 043910 150 -------------------------------------------------------------------------------- 149 (353)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (353)
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence
Q ss_pred -------------------------------------------------------------------------------h
Q 043910 150 -------------------------------------------------------------------------------L 150 (353)
Q Consensus 150 -------------------------------------------------------------------------------~ 150 (353)
.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 0
Q ss_pred cCCCccEEEccCccCcc---c-----------------------CccccCCCCCCEEecc--------------------
Q 043910 151 SAGNMEEMILNGTAIEE---L-----------------------PSSIECLSRLLHLGLR-------------------- 184 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~---l-----------------------~~~~~~l~~L~~L~l~-------------------- 184 (353)
.+++|+.+++++|.+.. . +..+..+++|+.+++.
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 11223333333332210 0 0111122333333332
Q ss_pred -----CCCCCcccCccccCCCCCCEEEeeCccCC--ccCcccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccc
Q 043910 185 -----DCKRLKSLPKGLCKLKSLKFLILNGCGIT--QLPENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 185 -----~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~ 256 (353)
.|......+..+..+++|+.|++++|.+. ..|..+..+++|+.|++++|++..+ |..+.++++|+.|++++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 22211122334556778888888888643 3567788999999999999999966 557889999999999996
Q ss_pred cccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhHHHHHHHh
Q 043910 257 ERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSILEDALQK 321 (353)
Q Consensus 257 ~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~ 321 (353)
.++.++. .+++|+.|+++++ .++.++...+...+++|+.|++++++.-++.....+..+.+..
T Consensus 529 -~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~ 595 (635)
T 4g8a_A 529 -NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 595 (635)
T ss_dssp -CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHT
T ss_pred -cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhC
Confidence 4555543 3578999999997 5777766655544578999999999999999888887776543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=195.62 Aligned_cols=263 Identities=15% Similarity=0.153 Sum_probs=203.7
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
++++++....+. +..+++|++|++++|.+++. + +..++ |++|++++|.++.++ +..+++|+.|+++
T Consensus 69 L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~--------~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 69 LICTSNNITTLD---LSQNTNLTYLACDSNKLTNL--------D-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCA 135 (457)
T ss_dssp EECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC--------C-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECT
T ss_pred EEccCCcCCeEc---cccCCCCCEEECcCCCCcee--------e-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECC
Confidence 455555544442 78899999999999998762 1 33344 999999999999886 6789999999999
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+|.+++++ +..+++|++|++++|..+... .+..+++|++|++++|.. +.+| +..+++|+.|++++|.++.+
T Consensus 136 ~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 136 RNTLTEID--VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TSCCSCCC--CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCccceec--cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcCCee
Confidence 99999873 778999999999999765544 467889999999999754 4455 77899999999999999987
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-----------c
Q 043910 169 PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-----------K 237 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-----------~ 237 (353)
+ +..+++|++|++++|. ++.+| +..+++|+.|++++|.++.+| ++.+++|+.|++++|.+. .
T Consensus 207 ~--l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 207 D--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp C--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred c--cccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 4 7889999999999965 55576 789999999999999999776 445666666665555543 3
Q ss_pred cchhHhhccCCceeccccccccccCCCCCCCcceeecCCCcCccccCccc------cccccccccEEEecCC
Q 043910 238 IPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLF------SISYDYYIRCFELSTN 303 (353)
Q Consensus 238 l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~------~~~~~~~l~~l~~~~c 303 (353)
+| .+.+++|+.|++++|..++.+|.....|+.|++++|+.++.+.... ....+++|+.|+++++
T Consensus 280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCC
Confidence 33 3578999999999998888877665666666666666555443211 1345778888888887
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-23 Score=193.06 Aligned_cols=280 Identities=15% Similarity=0.139 Sum_probs=219.1
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L~ 86 (353)
+++++.....++.. -.+++++|++++|.+++. .+..+...+ |++|++++|.++.++ .+..+++|+.|+
T Consensus 16 v~c~~~~l~~ip~~---~~~~l~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 16 VLCHRKRFVAVPEG---IPTETRLLDLGKNRIKTL------NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp EECCSCCCSSCCSC---CCTTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEeCCCCcCcCCCC---CCCCCcEEECCCCccceE------CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 34444443344432 246899999999998642 233455455 999999999988774 355899999999
Q ss_pred ccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccC
Q 043910 87 VPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAI 165 (353)
Q Consensus 87 L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 165 (353)
+++|.++.++.. +..+++|++|++++|.. +... ...+..+++|++|++++|......+..+..+++|+.|++++|.+
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCcc-ccCC-hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 999999998765 46799999999999854 3332 34688999999999999877666677788999999999999999
Q ss_pred cccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCcccch-hH
Q 043910 166 EELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFEKIPT-NV 242 (353)
Q Consensus 166 ~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l 242 (353)
+.++. .+..+++|+.|++++|......+..+..+++|+.|++++|... .++.......+|+.|++++|.+..++. .+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 98775 5788999999999997654444457889999999999998654 677666667799999999999998875 67
Q ss_pred hhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEecCC
Q 043910 243 IHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 243 ~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
..+++|+.|++++|. ++.++. .+++|+.|+++++ .++.+....+ ..+++|+.|++++|
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N 306 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAF-RGLNYLRVLNVSGN 306 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTTTB-TTCTTCCEEECCSS
T ss_pred cCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECHHHh-cCcccCCEEECCCC
Confidence 899999999999975 444432 3578999999997 4666544333 35788999999998
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=202.89 Aligned_cols=238 Identities=19% Similarity=0.190 Sum_probs=152.8
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L~ 86 (353)
+|++++....+.+.+|.++++|++|++++|.+++. .+..+.... |++|++++|.++.++ .+..+++|+.|+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCcc------CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 46666666666677788888888888888876531 223344444 888888888877665 344778888888
Q ss_pred ccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCc----cEEEcc
Q 043910 87 VPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNM----EEMILN 161 (353)
Q Consensus 87 L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~ 161 (353)
+++|.++.++. .+..+++|++|++++|. ++.+..+..++.+++|++|++++|...+..+..+..+++| +.++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 88888877664 46677888888888764 3332224567778888888888876555555556666666 677777
Q ss_pred CccCcccCccccCCCCCCEEeccCCCC-----------------------------------------------------
Q 043910 162 GTAIEELPSSIECLSRLLHLGLRDCKR----------------------------------------------------- 188 (353)
Q Consensus 162 ~~~i~~l~~~~~~l~~L~~L~l~~~~~----------------------------------------------------- 188 (353)
+|.++.+++......+|++|++++|..
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 777765544322223455555554310
Q ss_pred -----CcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 189 -----LKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 189 -----~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
....+..+..+++|+.|++++|.+..+|..+..+ +|++|++++|.+..+|. ..+++|+.|++++|.
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCc
Confidence 1112334555677777777777777777766666 77777777777665554 244555555555543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=207.98 Aligned_cols=151 Identities=12% Similarity=0.038 Sum_probs=97.2
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCC-C-CCCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSL-P-SITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l-~-~~~~~~~L~~L~ 86 (353)
+|++++....+.+..|.++++|++|++++|...+.+ .+..+..++ |++|++++|.+..+ | .+..+++|+.|+
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i-----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI-----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE-----CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCcccc-----CHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 455555555666677778888888888887554321 244455555 88888888887765 3 344778888888
Q ss_pred ccCCCccc-cCCC--CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcC--CCccEEEcc
Q 043910 87 VPHSNIQQ-LGDG--GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSA--GNMEEMILN 161 (353)
Q Consensus 87 L~~~~i~~-l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~ 161 (353)
+++|.+.+ .+.. +..+++|++|++++|.. +.......++.+++|++|++++|...+..+..+..+ ++|+.|+++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 88888775 3332 56678888888887643 333323467788888888888876655555555444 455555555
Q ss_pred CccCc
Q 043910 162 GTAIE 166 (353)
Q Consensus 162 ~~~i~ 166 (353)
+|.+.
T Consensus 183 ~n~l~ 187 (844)
T 3j0a_A 183 ANSLY 187 (844)
T ss_dssp CSBSC
T ss_pred CCccc
Confidence 55444
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=182.86 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=146.4
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCcccc-CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQL-GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|+++++.++.++. +..+++|+.|++++|.++.+ +..+..+++|++|++++|..++... ...+..+++|++|++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHL 112 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEEC
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEEC
Confidence 7888888888776663 44678888888888888776 4456667888888888876555443 346777888888888
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCc
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~ 214 (353)
++|...+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|. ++.++. .+..+++|+.|++++|.++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccc
Confidence 8876655556667778888888888888886665 36778888888888754 555553 57778888888888888875
Q ss_pred c-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccc
Q 043910 215 L-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 215 ~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~ 258 (353)
+ |..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 5 6677778888888888888886654 477788888888888654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=198.51 Aligned_cols=285 Identities=16% Similarity=0.163 Sum_probs=191.0
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.+|++++....+.+..|.++++|++|++++|.+++..+ ..+..+. |++|++++|.++.+|. +..+++|++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP------ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT------THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH------HHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 45667776677778889999999999999998866433 2222333 9999999999998885 5588999999
Q ss_pred EccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhh--cCCCccEEEccC
Q 043910 86 EVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL--SAGNMEEMILNG 162 (353)
Q Consensus 86 ~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~ 162 (353)
++++|.++.++. .+..+++|++|++++|.. +... ...+..+++|++|++++|...+..+..+. .+++|+.|++++
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCC-CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcc-cccC-chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999999988764 567789999999998853 3332 34677899999999999765554444443 457899999998
Q ss_pred ccCcccCc-cccCC---------------------------CCCCEEeccCCCCCcccCccccCCCC--CCEEEeeCccC
Q 043910 163 TAIEELPS-SIECL---------------------------SRLLHLGLRDCKRLKSLPKGLCKLKS--LKFLILNGCGI 212 (353)
Q Consensus 163 ~~i~~l~~-~~~~l---------------------------~~L~~L~l~~~~~~~~l~~~~~~l~~--L~~L~l~~~~i 212 (353)
|.++.+++ .+..+ ++|++|++++|...+..|..+..++. |+.|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 88875433 33322 45666666665544444555555543 88888888877
Q ss_pred CccC-cccCCCCCCcEEEeeCCCCcc-cchhHhhccCCceeccccccccc-----cCC-------CCCCCcceeecCCCc
Q 043910 213 TQLP-ENLGQLFSLEEFCLRKTKFEK-IPTNVIHLSRLHSFCLSYCERLQ-----SLP-------KLPCNLKELDADHCA 278 (353)
Q Consensus 213 ~~~~-~~~~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~l~~~~~l~-----~l~-------~~~~~L~~L~l~~c~ 278 (353)
+.++ ..++.+++|+.|++++|.+.. .+..+.++++|+.|++++|..-. .+| ..+++|++|+++++.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 7543 457777888888888887763 34466677777777776543211 222 124566666666652
Q ss_pred CccccCccccccccccccEEEecCC
Q 043910 279 ALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 279 ~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
++.++...+ ..+++|+.+++++|
T Consensus 341 -l~~~~~~~~-~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 341 -IPGIKSNMF-TGLINLKYLSLSNS 363 (680)
T ss_dssp -BCCCCTTTT-TTCTTCCEEECTTC
T ss_pred -cCCCChhHh-ccccCCcEEECCCC
Confidence 333332221 23445555555554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-24 Score=187.51 Aligned_cols=216 Identities=20% Similarity=0.206 Sum_probs=119.8
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCcccc---CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEE
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQL---GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTIL 134 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 134 (353)
+++|++++|.++.+|. +..+++|+.|++++|.++.. +.....+++|++|++++|.. +.. ...+..+++|++|
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l--~~~~~~l~~L~~L 106 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITM--SSNFLGLEQLEHL 106 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEE--EEEEETCTTCCEE
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccC--hhhcCCCCCCCEE
Confidence 6666666666666553 23566666666666666543 23334456666666666532 222 1235556666666
Q ss_pred eecCCCCCcccc-hhhhcCCCccEEEccCccCcc-cCccccCCCCCCEEeccCCCCCc-ccCccccCCCCCCEEEeeCcc
Q 043910 135 NLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEE-LPSSIECLSRLLHLGLRDCKRLK-SLPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 135 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~ 211 (353)
++++|...+..+ ..+..+++|++|++++|.++. .+..+..+++|++|++++|...+ .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 666643322211 245556666666666666653 33345566666666666644332 245556666666666666666
Q ss_pred CCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCCC----CCCcceeecCCCc
Q 043910 212 ITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPKL----PCNLKELDADHCA 278 (353)
Q Consensus 212 i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~ 278 (353)
++.+ |..+..+++|++|++++|.+..++. .+..+++|+.|++++|...+..+.. +++|+.|++++++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6644 4455666666666666666664433 4555666666666665443333321 2356666666653
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=183.07 Aligned_cols=255 Identities=18% Similarity=0.187 Sum_probs=203.2
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCC-CccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPN-PSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~ 137 (353)
-+.++.+++.++.+|... .++|+.|++++|.++.++.. +..+++|+.|++++|.. +.... ...+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECC
Confidence 346777788888888643 47999999999999998875 46799999999998743 22210 1355678999999999
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCcccCc--cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCc-
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEELPS--SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQ- 214 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~- 214 (353)
+|. +..+|..+..+++|++|++++|.++.++. .+..+++|++|++++|......+..+..+++|++|++++|.++.
T Consensus 87 ~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 964 45677778899999999999999997764 68899999999999976555566678899999999999999875
Q ss_pred -cCcccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCcccc
Q 043910 215 -LPENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFS 288 (353)
Q Consensus 215 -~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~ 288 (353)
+|..+..+++|++|++++|.+..+ +..+..+++|+.|++++|. ++.++. .+++|+.|++++|. ++.......
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 243 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL 243 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCHHHH
Confidence 788899999999999999999966 5678899999999999975 444443 35799999999984 555544444
Q ss_pred ccccccccEEEecCCccCchHHHHhHHHHHH
Q 043910 289 ISYDYYIRCFELSTNYKLDRNELRSILEDAL 319 (353)
Q Consensus 289 ~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~ 319 (353)
...+++|+.+++++++.-.+.....+..+..
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 4344689999999998777776666666644
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-24 Score=190.21 Aligned_cols=247 Identities=12% Similarity=0.064 Sum_probs=162.1
Q ss_pred cCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC
Q 043910 20 LYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG 98 (353)
Q Consensus 20 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~ 98 (353)
.....+..+++|++|++++|.+++..+. .+.... |++|++++|.++.++++..+++|+.|++++|.+++++.
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~- 97 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAA------DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV- 97 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHH------HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHH------HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-
Confidence 3345556677888888888877653321 122233 88888888887766666677888888888888776542
Q ss_pred CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccC-ccc-cCCC
Q 043910 99 GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELP-SSI-ECLS 176 (353)
Q Consensus 99 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~-~~l~ 176 (353)
.++|+.|++++|.. +... ...+++|++|++++|......+..+..+++|++|++++|.++.++ ..+ ..++
T Consensus 98 ---~~~L~~L~l~~n~l-~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 98 ---GPSIETLHAANNNI-SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp ---CTTCCEEECCSSCC-SEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ---CCCcCEEECCCCcc-CCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 37778888877642 2221 223567788888776555544556667777888888888777543 333 3567
Q ss_pred CCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccc
Q 043910 177 RLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 177 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
+|++|++++|. ++.++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus 170 ~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred cCCEEECCCCc-Cccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 78888887754 444443 3347778888888887777776677777788888888877777777777777888888776
Q ss_pred ccc-ccCCC---CCCCcceeecCCCcCcccc
Q 043910 257 ERL-QSLPK---LPCNLKELDADHCAALESL 283 (353)
Q Consensus 257 ~~l-~~l~~---~~~~L~~L~l~~c~~l~~~ 283 (353)
+.. ..++. .++.|+.+++.++..++..
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CccCcCHHHHHhccccceEEECCCchhccCC
Confidence 544 22322 2355666666655555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=189.00 Aligned_cols=254 Identities=21% Similarity=0.231 Sum_probs=203.6
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++.++..++.+|... .++++.|++++|.++.+. ..+..+++|+.|++++|. ++.+. ...+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIE-VGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcC-hhhccCcccCCEEECCC
Confidence 456677777788888543 478999999999998874 456779999999999874 44343 35788899999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|......+..+..+++|++|++++|.++.++. .+..+++|++|++++|+.++.++. .+..+++|+.|++++|.++.+|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 76554444457889999999999999998776 678899999999999888888875 5889999999999999999887
Q ss_pred cccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCcccccccc
Q 043910 217 ENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYD 292 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 292 (353)
. +..+++|+.|++++|.+..+ +..+.++++|+.|++++|......+. .+++|+.|+++++ .++.++...+ ..+
T Consensus 213 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l 289 (452)
T 3zyi_A 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLF-TPL 289 (452)
T ss_dssp C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSS-TTC
T ss_pred c-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHh-ccc
Confidence 5 78899999999999999855 66788999999999999754333333 3578999999998 6777776544 346
Q ss_pred ccccEEEecCCccCchHHHHhHHHHHH
Q 043910 293 YYIRCFELSTNYKLDRNELRSILEDAL 319 (353)
Q Consensus 293 ~~l~~l~~~~c~~l~~~~~~~~~~~~~ 319 (353)
++|+.+++.+++.-++.....+..+.+
T Consensus 290 ~~L~~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp TTCCEEECCSSCEECSTTTHHHHHHHH
T ss_pred cCCCEEEccCCCcCCCCCchHHHHHHH
Confidence 789999999999888887776665544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=190.68 Aligned_cols=261 Identities=15% Similarity=0.131 Sum_probs=198.6
Q ss_pred eCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEEc
Q 043910 11 DMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLEV 87 (353)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~L 87 (353)
|.++.....++... .++|++|++++|.+++. ....+...+ |++|++++|.++.++. +..+++|++|++
T Consensus 37 ~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 37 KGSSGSLNSIPSGL---TEAVKSLDLSNNRITYI------SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECCSTTCSSCCTTC---CTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred eCCCCCcccccccc---cccCcEEECCCCcCccc------CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 44544444444322 35899999999988542 122444444 9999999999887753 558899999999
Q ss_pred cCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCccc-chhhhcCCCccEEEccCccC
Q 043910 88 PHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRL-PAEILSAGNMEEMILNGTAI 165 (353)
Q Consensus 88 ~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i 165 (353)
++|.++.++.. +..+++|++|++++|. ++.++....+..+++|++|++++|+..+.+ +..+..+++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 99999988765 5678999999999874 444443246888999999999998655555 45688899999999999999
Q ss_pred ccc-CccccCCCCCCEEeccCCCCCcccCcc-ccCCCCCCEEEeeCccCCccCc----ccCCCCCCcEEEeeCCCCc---
Q 043910 166 EEL-PSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKSLKFLILNGCGITQLPE----NLGQLFSLEEFCLRKTKFE--- 236 (353)
Q Consensus 166 ~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~~~~----~~~~l~~L~~L~l~~~~l~--- 236 (353)
+.+ |..+..+++|++|++++|. ++.+|.. +..+++|+.|++++|.++.++. .......++.++++++.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred CccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 965 7788999999999999865 5666653 4568999999999999885432 1234567889999998875
Q ss_pred --ccchhHhhccCCceeccccccccccCCCC----CCCcceeecCCCcCcccc
Q 043910 237 --KIPTNVIHLSRLHSFCLSYCERLQSLPKL----PCNLKELDADHCAALESL 283 (353)
Q Consensus 237 --~l~~~l~~l~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~~l~~~ 283 (353)
.+|..+..+++|+.|++++| .++.+|.. +++|++|++++++-..+.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 36777889999999999996 45677753 478999999998654443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=186.01 Aligned_cols=255 Identities=15% Similarity=0.144 Sum_probs=202.1
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.++++++...++.+.+|..+++|++|++++|.+.+.. +..+..++ |++|++++|.++.+|. +..+++|+.|
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC------HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 3566777777777888999999999999999986532 23344445 9999999999999885 3479999999
Q ss_pred EccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC------------------Ccccc
Q 043910 86 EVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ------------------LKRLP 146 (353)
Q Consensus 86 ~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~------------------~~~~~ 146 (353)
++++|.++.++. .+..+++|+.|++++|. ++.. .+..+++|++|++++|.. +..+|
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBC----CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCc-CCcc----ccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 999999988765 46778999999999875 3322 233445555555444322 22222
Q ss_pred hhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCc
Q 043910 147 AEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLE 226 (353)
Q Consensus 147 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~ 226 (353)
. ...++|+.|++++|.++.. +.+..+++|++|++++|...+..|..+..+++|+.|++++|.++.+|..+..+++|+
T Consensus 222 ~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 298 (390)
T 3o6n_A 222 G--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298 (390)
T ss_dssp C--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCC
T ss_pred c--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCC
Confidence 2 2346899999999999976 478899999999999976555567789999999999999999999888788899999
Q ss_pred EEEeeCCCCcccchhHhhccCCceeccccccccccCC-CCCCCcceeecCCCc
Q 043910 227 EFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP-KLPCNLKELDADHCA 278 (353)
Q Consensus 227 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~L~~L~l~~c~ 278 (353)
+|++++|.+..+|..+..+++|+.|++++|. ++.++ ..+++|+.|++++++
T Consensus 299 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred EEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence 9999999999999889999999999999976 44444 456899999999874
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=201.32 Aligned_cols=240 Identities=18% Similarity=0.105 Sum_probs=148.9
Q ss_pred EeCCCc-cccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCC-CCC---CCCCCCce
Q 043910 10 LDMSKV-EEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKS-LPS---ITHPAKLV 83 (353)
Q Consensus 10 l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~-l~~---~~~~~~L~ 83 (353)
+|++++ ....+.+++|.++++|++|++++|.+.+. .+..+..+. |++|++++|.+.. ++. +..+++|+
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc------CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 344444 33455577788888888888888887542 234444444 8888888887764 332 44677888
Q ss_pred EEEccCCCccccC--CCCcCCCCccEEecCCCcCcCCCC-------------------------CCccccCCcc------
Q 043910 84 LLEVPHSNIQQLG--DGGQHHCKLSQIITAARNFVTKTP-------------------------NPSFIRSLNK------ 130 (353)
Q Consensus 84 ~L~L~~~~i~~l~--~~~~~~~~L~~L~l~~~~~l~~~~-------------------------~~~~~~~l~~------ 130 (353)
.|++++|.+..+. ..+..+++|+.|++++|.. +... ....+..+.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i-~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI-FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC-CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcC-CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 8888888777653 2456677777777776532 1110 0011222222
Q ss_pred CcEEeecCCCCCcccchhhh------------------------------------c--CCCccEEEccCccCccc-Ccc
Q 043910 131 LTILNLSGCSQLKRLPAEIL------------------------------------S--AGNMEEMILNGTAIEEL-PSS 171 (353)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~------------------------------------~--~~~L~~L~l~~~~i~~l-~~~ 171 (353)
|++|++++|......+..+. . .++|+.|++++|.+..+ +..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 77777777643332222111 1 25677777777777744 445
Q ss_pred ccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCc
Q 043910 172 IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLH 249 (353)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~ 249 (353)
+..+++|++|++++|......|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..++. .+..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 66777777777777554444455667777777777777777654 4566777777777777777765543 456677777
Q ss_pred eeccccc
Q 043910 250 SFCLSYC 256 (353)
Q Consensus 250 ~L~l~~~ 256 (353)
.|++++|
T Consensus 366 ~L~Ls~N 372 (844)
T 3j0a_A 366 TLDLRDN 372 (844)
T ss_dssp EEEEETC
T ss_pred EEECCCC
Confidence 7777765
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=185.68 Aligned_cols=254 Identities=18% Similarity=0.203 Sum_probs=203.3
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++..+..++.+|... .++++.|++++|.++.++ ..+..+++|+.|++++|. ++.+. ...+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCC
Confidence 456677777788888643 478999999999998876 456778999999999875 33332 35788899999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|......+..+..+++|++|++++|.++.++. .+..+++|++|++++|+.++.++. .+..+++|+.|++++|.++.+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 75544434468889999999999999998765 678899999999999888888775 6888999999999999999888
Q ss_pred cccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccccccCCC---CCCCcceeecCCCcCccccCcccccccc
Q 043910 217 ENLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCERLQSLPK---LPCNLKELDADHCAALESLSDLFSISYD 292 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 292 (353)
. +..+++|+.|++++|.+..+ +..+.++++|+.|++++|......+. .+++|+.|+++++ .++.++...+ ..+
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l 278 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLF-TPL 278 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTT-SSC
T ss_pred c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHh-ccc
Confidence 5 78899999999999999865 56788999999999998654332232 3578999999997 6777776544 346
Q ss_pred ccccEEEecCCccCchHHHHhHHHHHH
Q 043910 293 YYIRCFELSTNYKLDRNELRSILEDAL 319 (353)
Q Consensus 293 ~~l~~l~~~~c~~l~~~~~~~~~~~~~ 319 (353)
++|+.+++.+++.-++.....+..+..
T Consensus 279 ~~L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp TTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred cCCCEEEcCCCCccCCCCchHHHHHHH
Confidence 789999999999988887777665544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=190.90 Aligned_cols=195 Identities=24% Similarity=0.300 Sum_probs=97.2
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|++++|.++.+|.. +++|+.|++++|.+++++.. .++|++|++++|. ++.+ +.++.+++|++|++++|
T Consensus 93 L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~l---p~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 93 LESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKL---PELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSC---CCCTTCTTCCEEECCSS
T ss_pred CCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCC---cccCCCCCCCEEECCCC
Confidence 44444444444444322 24444444444444433221 1455555555542 2222 13555555555555554
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
... .+|.. ..+|++|++++|.++.+| .+..+++|++|++++|. ++.+|.. .++|++|++++|.++.+|. +
T Consensus 164 ~l~-~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l~~lp~-~ 233 (454)
T 1jl5_A 164 SLK-KLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNILEELPE-L 233 (454)
T ss_dssp CCS-CCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSSCCC-C
T ss_pred cCc-ccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcCCcccc-c
Confidence 322 23322 235555555555555554 35555556666655533 3334332 1355666666665555553 5
Q ss_pred CCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcceeecCCC
Q 043910 220 GQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHC 277 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 277 (353)
+.+++|++|++++|.+..+|.. +++|+.|++++|. ++.+|..+++|+.|++++|
T Consensus 234 ~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 5566666666666666555432 3556666666543 4445555566666666665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=186.34 Aligned_cols=258 Identities=24% Similarity=0.249 Sum_probs=196.4
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
.++++++....++... .++|++|++++|.++. . +. ....|++|++++|.++.+|. .+++|++|+++
T Consensus 44 ~L~ls~n~L~~lp~~l---~~~L~~L~L~~N~l~~-l------p~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 44 VLNVGESGLTTLPDCL---PAHITTLVIPDNNLTS-L------PA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF 109 (622)
T ss_dssp EEECCSSCCSCCCSCC---CTTCSEEEECSCCCSC-C------CC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred EEEecCCCcCccChhh---CCCCcEEEecCCCCCC-C------CC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECc
Confidence 3455555544444432 2688999999888753 1 22 12348899999998888887 67889999999
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+|.++.++. .+++|+.|++++|. ++.++. .+++|++|++++|.. ..+|. .+.+|+.|++++|.++.+
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV-----LPPGLQELSVSDNQL-ASLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSCC
T ss_pred CCcCCCCCC---CCCCcCEEECCCCC-CCcCCC-----CCCCCCEEECcCCcC-CCcCC---ccCCCCEEECCCCCCCCC
Confidence 998888765 56888899998774 444432 248899999998644 44553 356899999999999988
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCC
Q 043910 169 PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L 248 (353)
| ..+++|++|++++|. ++.+|.. +++|+.|++++|.++.+|.. +++|+.|++++|.+..+| ..+++|
T Consensus 177 ~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L 243 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSEL 243 (622)
T ss_dssp C---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTC
T ss_pred c---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcC
Confidence 7 456899999999854 6667653 47899999999999988763 478999999999999888 457899
Q ss_pred ceeccccccccccCCCCCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHHH
Q 043910 249 HSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNEL 311 (353)
Q Consensus 249 ~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~ 311 (353)
+.|++++| .++.+|..+++|+.|++++| .++.+|... ..+++|+.|++++|+ +.....
T Consensus 244 ~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l--~~l~~L~~L~L~~N~-l~~~~~ 301 (622)
T 3g06_A 244 KELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESL--IHLSSETTVNLEGNP-LSERTL 301 (622)
T ss_dssp CEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCGGG--GGSCTTCEEECCSCC-CCHHHH
T ss_pred cEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCHHH--hhccccCEEEecCCC-CCCcCH
Confidence 99999996 67789888899999999998 677887653 357889999999995 444433
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-24 Score=191.47 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=193.0
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.+|++++....+.+..|.++++|++|++++|.+++.. . +..++ |++|++++|.++.++. .++|+.|++
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~-~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l 106 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------D-LESLSTLRTLDLNNNYVQELLV---GPSIETLHA 106 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------E-ETTCTTCCEEECCSSEEEEEEE---CTTCCEEEC
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------h-hhhcCCCCEEECcCCccccccC---CCCcCEEEC
Confidence 4677888777888899999999999999999885422 1 33344 9999999999887663 389999999
Q ss_pred cCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh-hcCCCccEEEccCccCc
Q 043910 88 PHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI-LSAGNMEEMILNGTAIE 166 (353)
Q Consensus 88 ~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~ 166 (353)
++|.++.++.. .+++|+.|++++|.. +... ...+..+++|++|++++|...+..+..+ ..+++|++|++++|.++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNKI-TMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSCC-CSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCCC-CCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 99999887643 378899999998753 3332 2367788999999999987666555555 36899999999999999
Q ss_pred ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc--ccchhHhh
Q 043910 167 ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE--KIPTNVIH 244 (353)
Q Consensus 167 ~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~ 244 (353)
.++.. ..+++|++|++++| .++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++. .++..+..
T Consensus 183 ~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 183 DVKGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp EEECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred ccccc-cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 88543 45899999999985 5667777788999999999999999999988999999999999999998 66778889
Q ss_pred ccCCceeccccccccccC
Q 043910 245 LSRLHSFCLSYCERLQSL 262 (353)
Q Consensus 245 l~~L~~L~l~~~~~l~~l 262 (353)
+++|+.+++++++.++..
T Consensus 261 ~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred cccceEEECCCchhccCC
Confidence 999999999987776554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=177.97 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=126.9
Q ss_pred EeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC
Q 043910 63 LFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ 141 (353)
Q Consensus 63 L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 141 (353)
.+.+++.++.+|... .++|+.|++++|.++.++. .+..+++|+.|++++|. ++... ...+..+++|++|++++|..
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIE-EDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccC-HhhcCCCCCCCEEECCCCcC
Confidence 344444455554322 2355555555555555443 34445555555555442 22221 12344555555555555433
Q ss_pred Ccccchh-hhcCCCccEEEccCccCcccCc--cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCcc-C
Q 043910 142 LKRLPAE-ILSAGNMEEMILNGTAIEELPS--SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQL-P 216 (353)
Q Consensus 142 ~~~~~~~-~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~-~ 216 (353)
. .++.. +..+++|++|++++|.++.+|. .+..+++|++|++++|+.++.++ ..+..+++|+.|++++|.++.+ |
T Consensus 113 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 2 23322 4455555555555555555444 34455555555555543333332 3445555555555555555433 4
Q ss_pred cccCCCCCCcEEEeeCCCCcccchh-HhhccCCceeccccccccc-------------------------------cCCC
Q 043910 217 ENLGQLFSLEEFCLRKTKFEKIPTN-VIHLSRLHSFCLSYCERLQ-------------------------------SLPK 264 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~l~-------------------------------~l~~ 264 (353)
..+..+++|++|++++|.+..++.. +..+++|+.|++++|..-. .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 4455555555555555555544442 2234555555555542211 1221
Q ss_pred ---CCCCcceeecCCCcCccccCccccccccccccEEEecCCccCchHH
Q 043910 265 ---LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNE 310 (353)
Q Consensus 265 ---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 310 (353)
.+++|+.|++++| .++.++...+ ..+++|+.+++++++...+..
T Consensus 272 ~l~~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 272 LLNQISGLLELEFSRN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcccCCCEEECCCC-CCCccCHHHH-hcCCCCCEEEeeCCCccCcCC
Confidence 3578999999998 5778876543 346889999999998777664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=185.86 Aligned_cols=220 Identities=17% Similarity=0.188 Sum_probs=136.5
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCC-CCcCCCC
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGD-GGQHHCK 104 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~ 104 (353)
++++.|++++|.+.+. .+..+..+. |++|++++|.++.++ .+..+++|+.|++++|.++.++. .+..+++
T Consensus 64 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII------KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCCCEE------CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCcCCee------CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 4567777777766431 123333334 777777777766555 23356777777777777766654 3455677
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch-hhhcCCCccEEEccCccCcccCccccCCCCCCEEec
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA-EILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 183 (353)
|+.|++++|. ++.++ ...+..+++|++|++++|+.++.++. .+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 138 L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 138 LKELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDL 214 (440)
T ss_dssp CCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEEC
T ss_pred CceeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEEC
Confidence 7777777654 23222 23566667777777777666555554 4566777777777777777665 3566677777777
Q ss_pred cCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceecccccc
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 257 (353)
++|......|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|+++.++. .+..+++|+.|++++|+
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 76543333355666777777777777776644 3446666777777777777765554 34566777777776654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-22 Score=192.33 Aligned_cols=237 Identities=20% Similarity=0.182 Sum_probs=185.1
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L 85 (353)
.++++++....+.+..|..+++|++|++++|.+++.. +..+..++ |++|++++|.++.+|. +..+++|+.|
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC------HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 4567777777777888999999999999999987633 23344444 9999999999998885 3478999999
Q ss_pred EccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccc----------------cC---------------------
Q 043910 86 EVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFI----------------RS--------------------- 127 (353)
Q Consensus 86 ~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~----------------~~--------------------- 127 (353)
++++|.+..+++ .+..+++|+.|++++|.. +..+ ...+ ..
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC-hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence 999999988765 466789999999998743 2221 1111 11
Q ss_pred CccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEE
Q 043910 128 LNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLI 206 (353)
Q Consensus 128 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 206 (353)
.++|++|++++|...+ +..+..+++|+.|++++|.++.+ |..+..+++|++|++++| .++.+|..+..+++|+.|+
T Consensus 231 ~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLD 307 (597)
T ss_dssp CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEE
T ss_pred CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEE
Confidence 1235555555543332 24577889999999999999954 678899999999999995 5666787778899999999
Q ss_pred eeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccc
Q 043910 207 LNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 207 l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
+++|.++.+|..+..+++|+.|++++|.+..++ +..+++|+.|++++|+.
T Consensus 308 Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 308 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCC
Confidence 999999999988888999999999999998775 56789999999999753
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-21 Score=179.61 Aligned_cols=220 Identities=24% Similarity=0.302 Sum_probs=123.6
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|++++|.++.+|.+..+++|++|++++|.+++++.. ..+|++|++++|. ++.. +.++.+++|++|++++|
T Consensus 133 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~-l~~l---~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEEL---PELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSC---CCCTTCTTCCEEECCSS
T ss_pred CCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc-CCcC---ccccCCCCCCEEECCCC
Confidence 677777777766666655667777777777776665432 2466677776653 3322 24566677777777665
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
... .+|.. .++|++|++++|.++.+| .+..+++|++|++++|. ++.+|.. +++|+.|++++|.++.+|..
T Consensus 206 ~l~-~l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~l~~l~~~- 275 (454)
T 1jl5_A 206 SLK-KLPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNYLTDLPEL- 275 (454)
T ss_dssp CCS-SCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSCCSCCCCC-
T ss_pred cCC-cCCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCcccccCcc-
Confidence 433 23321 235666666666666655 35566666666666643 3334431 24455555555555444432
Q ss_pred CCCCCCcEEEeeCCCCcccch---hH-------------hhc-cCCceeccccccccccCCCCCCCcceeecCCCcCccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIPT---NV-------------IHL-SRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALES 282 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~---~l-------------~~l-~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~ 282 (353)
.++|+.|++++|.+..++. .+ ..+ ++|+.|++++| .++.+|..+++|+.|++++| .++.
T Consensus 276 --~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~l~~ 351 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAE 351 (454)
T ss_dssp --CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSC
T ss_pred --cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccccCCcCCEEECCCC-cccc
Confidence 1344444444444432211 00 012 36777777764 34456666677777777776 4566
Q ss_pred cCccccccccccccEEEecCCcc
Q 043910 283 LSDLFSISYDYYIRCFELSTNYK 305 (353)
Q Consensus 283 ~~~~~~~~~~~~l~~l~~~~c~~ 305 (353)
++. .+++|+.+++++|.-
T Consensus 352 lp~-----~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 352 VPE-----LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCC-----CCTTCCEEECCSSCC
T ss_pred ccc-----hhhhccEEECCCCCC
Confidence 654 246677777777643
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-22 Score=172.82 Aligned_cols=217 Identities=17% Similarity=0.169 Sum_probs=172.9
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEE
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLL 85 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L 85 (353)
.+++++.....++.. ..++|++|++++|.+++. .+..+...+ |++|++++|.++.++ .+..+++|+.|
T Consensus 15 ~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHV------PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp EEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred EEEcCcCCcccCCcC---CCCCceEEEeeCCcCCcc------CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 345555544444432 357899999999998642 223344444 999999999988774 35578999999
Q ss_pred EccCCC-cccc-CCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc
Q 043910 86 EVPHSN-IQQL-GDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT 163 (353)
Q Consensus 86 ~L~~~~-i~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 163 (353)
++++|. +..+ +..+..+++|+.|++++|.. +... ...+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcC-CEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 999997 8877 45667799999999999853 3332 346888999999999997665444455888999999999999
Q ss_pred cCcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 164 AIEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 164 ~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
.++.++. .+..+++|++|++++|...+..|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9998876 48889999999999976555557788999999999999999998774 4889999999999999986
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=183.04 Aligned_cols=220 Identities=17% Similarity=0.192 Sum_probs=153.3
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCCC-CcCCCC
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGDG-GQHHCK 104 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~ 104 (353)
+++++|++++|.+++. .+..+..+. |++|++++|.++.++ .+..+++|+.|++++|.++.++.. +..+++
T Consensus 75 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcCCcCceE------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 5678888888777542 223344444 888888888777665 334677888888888888776654 455778
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch-hhhcCCCccEEEccCccCcccCccccCCCCCCEEec
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA-EILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 183 (353)
|++|++++|. ++.++ ...+..+++|++|++++|+.++.++. .+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 149 L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 149 LRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEM 225 (452)
T ss_dssp CCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEEC
Confidence 8888887764 33332 23567778888888887766666654 4667778888888888877775 4667778888888
Q ss_pred cCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceecccccc
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 257 (353)
++|...+..|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 87654444456677788888888888877754 4456777788888888888776654 35667778888887764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-23 Score=193.61 Aligned_cols=215 Identities=13% Similarity=0.058 Sum_probs=165.8
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCcc
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLS 106 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~ 106 (353)
+++|++|++++|.+++..+ ..+..++ |++|++++|.++.++++..+++|+.|++++|.++.++. .++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA------ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG------GGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCccEEEeeCCcCCCCCH------HHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 3489999999998876432 2233344 99999999988766667788999999999998887653 38889
Q ss_pred EEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcc-cCcccc-CCCCCCEEecc
Q 043910 107 QIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEE-LPSSIE-CLSRLLHLGLR 184 (353)
Q Consensus 107 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~-~l~~L~~L~l~ 184 (353)
.|++++|.. +..+ ...+++|++|++++|...+..|..+..+++|+.|++++|.++. .|..+. .+++|++|+++
T Consensus 103 ~L~L~~N~l-~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 103 TLHAANNNI-SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EEECCSSCC-CCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EEECcCCcC-CCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 999988743 2221 2346788999999877766667678888899999999998885 445554 68899999998
Q ss_pred CCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccccc
Q 043910 185 DCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERL 259 (353)
Q Consensus 185 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l 259 (353)
+|. ++.++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|+..
T Consensus 178 ~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 178 YNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TSC-CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCc-cccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 865 555543 4468889999999999888887788888999999999998888888888888999999887654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-22 Score=186.32 Aligned_cols=232 Identities=16% Similarity=0.122 Sum_probs=187.5
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEV 87 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L 87 (353)
.++++++....+.+..|.++++|++|++++|.+++.. + +..++ |++|++++|.++.++.. ++|+.|++
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~-l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L 106 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------D-LESLSTLRTLDLNNNYVQELLVG---PSIETLHA 106 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-------E-CTTCTTCCEEECCSSEEEEEEEC---TTCCEEEC
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-------c-cccCCCCCEEEecCCcCCCCCCC---CCcCEEEC
Confidence 4677777777788889999999999999999886422 1 33344 99999999998876633 78999999
Q ss_pred cCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhh-cCCCccEEEccCccCc
Q 043910 88 PHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL-SAGNMEEMILNGTAIE 166 (353)
Q Consensus 88 ~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~ 166 (353)
++|.+..++.. .+++|+.|++++|.. +... ...++.+++|++|++++|...+..|..+. .+++|+.|++++|.++
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKI-TMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCC-CSGG-GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCC-CCCC-chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999887643 468899999998753 3332 23677889999999999877776776665 7899999999999999
Q ss_pred ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc--ccchhHhh
Q 043910 167 ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE--KIPTNVIH 244 (353)
Q Consensus 167 ~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~ 244 (353)
.++. ...+++|++|++++| .++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cccc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 8754 446899999999985 4666777788999999999999999999988889999999999999987 66777888
Q ss_pred ccCCceecccccc
Q 043910 245 LSRLHSFCLSYCE 257 (353)
Q Consensus 245 l~~L~~L~l~~~~ 257 (353)
++.|+.+++..+.
T Consensus 261 l~~L~~l~~~~~~ 273 (487)
T 3oja_A 261 NQRVQTVAKQTVK 273 (487)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCCCcEEeccccc
Confidence 8888888886443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=178.74 Aligned_cols=236 Identities=25% Similarity=0.249 Sum_probs=193.4
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccE
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQ 107 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~ 107 (353)
..+++.|++++|.++. . +..+. ..|++|++++|.++.+|. .+++|+.|++++|.++.++. .+++|++
T Consensus 39 ~~~l~~L~ls~n~L~~-l------p~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 39 NNGNAVLNVGESGLTT-L------PDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp HHCCCEEECCSSCCSC-C------CSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCCCcEEEecCCCcCc-c------ChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 3469999999999852 2 22222 459999999999999988 57999999999999998876 6799999
Q ss_pred EecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCC
Q 043910 108 IITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCK 187 (353)
Q Consensus 108 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~ 187 (353)
|++++|. ++.++. .+++|++|++++|. +..+|.. +++|++|++++|.++.+|.. +++|+.|++++|
T Consensus 106 L~Ls~N~-l~~l~~-----~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N- 171 (622)
T 3g06_A 106 LSIFSNP-LTHLPA-----LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN- 171 (622)
T ss_dssp EEECSCC-CCCCCC-----CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-
T ss_pred EECcCCc-CCCCCC-----CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCC-
Confidence 9999874 444432 56899999999965 4556653 58999999999999988753 578999999985
Q ss_pred CCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCC
Q 043910 188 RLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPC 267 (353)
Q Consensus 188 ~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 267 (353)
.++.+| ..+++|+.|++++|.++.+|.. .++|+.|++++|.+..+|.. +++|+.|++++| .++.+|..++
T Consensus 172 ~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N-~L~~lp~~l~ 241 (622)
T 3g06_A 172 QLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVLPS 241 (622)
T ss_dssp CCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCCCCT
T ss_pred CCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCC-ccCcCCCCCC
Confidence 566677 4578999999999999988763 47899999999999988763 578999999986 6777888889
Q ss_pred CcceeecCCCcCccccCccccccccccccEEEecCCccCc
Q 043910 268 NLKELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLD 307 (353)
Q Consensus 268 ~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~ 307 (353)
+|+.|++++| .++.++. .+++|+.|++++| ++.
T Consensus 242 ~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 242 ELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCC
T ss_pred cCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCC
Confidence 9999999998 6888876 3578999999998 444
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=164.05 Aligned_cols=205 Identities=17% Similarity=0.162 Sum_probs=154.9
Q ss_pred CCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-h
Q 043910 70 LKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-A 147 (353)
Q Consensus 70 ~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~ 147 (353)
++.+|. ..++|+.|++++|+++.++. .+..+++|+.|++++|..++.++ ...+..+++|++|++++|+.+..++ .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 667776 35688999999999888776 45678889999998886555554 3467888899999998833444444 4
Q ss_pred hhhcCCCccEEEccCccCcccCccccCCCCCC---EEeccCCCCCcccCc-cccCCCCCC-EEEeeCccCCccCcccCCC
Q 043910 148 EILSAGNMEEMILNGTAIEELPSSIECLSRLL---HLGLRDCKRLKSLPK-GLCKLKSLK-FLILNGCGITQLPENLGQL 222 (353)
Q Consensus 148 ~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~---~L~l~~~~~~~~l~~-~~~~l~~L~-~L~l~~~~i~~~~~~~~~l 222 (353)
.+..+++|++|++++|.++.+|. +..+++|+ +|++++|..++.++. .+..+++|+ .|++++|.++.+|......
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 67788899999999998888876 77788887 999998746666664 578888999 9999999888887655555
Q ss_pred CCCcEEEeeCCC-Ccccch-hHhhc-cCCceeccccccccccCCC-CCCCcceeecCCCcC
Q 043910 223 FSLEEFCLRKTK-FEKIPT-NVIHL-SRLHSFCLSYCERLQSLPK-LPCNLKELDADHCAA 279 (353)
Q Consensus 223 ~~L~~L~l~~~~-l~~l~~-~l~~l-~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~ 279 (353)
++|+.|++++|+ +..++. .+..+ ++|+.|++++| .++.+|. .+++|+.|++.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 789999999995 887754 56677 88999998885 4556654 467777887777654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-22 Score=179.01 Aligned_cols=192 Identities=17% Similarity=0.158 Sum_probs=87.3
Q ss_pred cceEeecccCCC-CCCC-C--CCCCCceEEEccCCCccccCCCCcCC-----CCccEEecCCCcCcCCCCCCccccCCcc
Q 043910 60 IRYLFWHGYPLK-SLPS-I--THPAKLVLLEVPHSNIQQLGDGGQHH-----CKLSQIITAARNFVTKTPNPSFIRSLNK 130 (353)
Q Consensus 60 L~~L~l~~~~~~-~l~~-~--~~~~~L~~L~L~~~~i~~l~~~~~~~-----~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 130 (353)
|++|++++|.++ .+|. . ..+++|+.|++++|.+++.+..+..+ ++|++|++++|.. +..+ ...++.+++
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~-~~~~~~l~~ 174 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFS-CEQVRVFPA 174 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCC-TTTCCCCSS
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccch-HHHhccCCC
Confidence 555555555544 2332 1 34455555555555555443222222 4555555554432 2221 124445555
Q ss_pred CcEEeecCCCCCcc--cchhh--hcCCCccEEEccCccCcccC---c-cccCCCCCCEEeccCCCCCcccC-ccccCCCC
Q 043910 131 LTILNLSGCSQLKR--LPAEI--LSAGNMEEMILNGTAIEELP---S-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKS 201 (353)
Q Consensus 131 L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~i~~l~---~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~ 201 (353)
|++|++++|...+. ++..+ ..+++|++|++++|.++.++ . .+..+++|++|++++|...+..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 55555555443332 12222 44555555555555554221 1 12344555555555543222222 22334455
Q ss_pred CCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccc
Q 043910 202 LKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 202 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 256 (353)
|++|++++|.++.+|..+. ++|++|++++|+++.+|. +..+++|+.|++++|
T Consensus 255 L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred CCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 5555555555555544433 455555555555554443 444555555555543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=166.74 Aligned_cols=186 Identities=18% Similarity=0.276 Sum_probs=116.1
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|+++++.++.++.+..+++|+.|++++|.+..++. +..+++|+.|++++|. ++. .+.+..+++|++|++++|
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~---~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKN---VSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSC---CGGGTTCTTCCEEECTTS
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCC---chhhcCCCCCCEEECCCC
Confidence 56666666666655555556666666666666666554 5556666666666653 222 235666666777777665
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. ..++. +..+++|++|++++|.++.++. +..+++|++|++++| .++.++. +..+++|+.|++++|.++.++. +
T Consensus 118 ~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l 191 (308)
T 1h6u_A 118 QI-TDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNKISDISP-L 191 (308)
T ss_dssp CC-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CC-CCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCCccCcChh-h
Confidence 43 33333 5666677777777776666554 566677777777764 3444444 6666777777777776666554 5
Q ss_pred CCCCCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
..+++|++|++++|.+..++. +..+++|+.|++++|+
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 666677777777777665553 5666777777776653
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-20 Score=161.43 Aligned_cols=202 Identities=17% Similarity=0.201 Sum_probs=146.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
++.+++.++.++.++.+..+++|+.|++++|.+..++ .+..+++|++|++++|. ++..+ ...+..+++|++|++++|
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLP-NGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTS
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccC-hhHhcCCcCCCEEECCCC
Confidence 7777777777777777777788888888888877653 56677888888888764 33332 234677888888888887
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
...+..+..+..+++|++|++++|.++.+++. +..+++|++|++++|. ++.++ ..+..+++|+.|++++|.++.++.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 65544444567788888888888888876654 5778888888888865 44444 456788888888888888886654
Q ss_pred -ccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcce
Q 043910 218 -NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKE 271 (353)
Q Consensus 218 -~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~ 271 (353)
.+..+++|+.|++++|++. +.+++|+.+++..|...+.+|....++..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 3677888888888888764 33567788888877766777766555443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=157.83 Aligned_cols=173 Identities=24% Similarity=0.305 Sum_probs=84.4
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCccccCCCC-cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|+++++.++.++. +..+++|++|++++|.++.++... ..+++|++|++++|. ++..+ ...+..+++|++|++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRL 116 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEEC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEEC
Confidence 5555555555555542 334555555555555555554433 335555555555543 22221 123445555555555
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCc
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~ 214 (353)
++|......+..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.++ ..+..+++|+.|++++|.++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCc
Confidence 55433333333344555555555555555544432 4445555555555532 33333 234455555555555555554
Q ss_pred cCc-ccCCCCCCcEEEeeCCCC
Q 043910 215 LPE-NLGQLFSLEEFCLRKTKF 235 (353)
Q Consensus 215 ~~~-~~~~l~~L~~L~l~~~~l 235 (353)
+|. .+..+++|+.|++++|++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCHHHhccccCCCEEEecCCCe
Confidence 443 244455555555555544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=165.20 Aligned_cols=197 Identities=14% Similarity=0.211 Sum_probs=165.1
Q ss_pred HhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCC
Q 043910 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHC 103 (353)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~ 103 (353)
+..+++|++|++++|.+.. . +.+..+. |++|++++|.++.++.+..+++|+.|++++|.++.++ .+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-------l-~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-------I-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-------C-TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCT
T ss_pred HHHcCCcCEEEeeCCCccC-------c-hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCC
Confidence 3457899999999998754 1 2344444 9999999999999888778999999999999999875 577899
Q ss_pred CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEec
Q 043910 104 KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 183 (353)
+|+.|++++|. ++. .+.+..+++|++|++++|.. ..++. +..+++|+.|++++|.++.++. +..+++|++|++
T Consensus 108 ~L~~L~l~~n~-l~~---~~~l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITD---VTPLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp TCCEEECTTSC-CCC---CGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred CCCEEECCCCC-CCC---chhhcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEEC
Confidence 99999999985 333 34588999999999999754 44444 8889999999999999998876 889999999999
Q ss_pred cCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccch
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPT 240 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 240 (353)
++|. ++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|++...|.
T Consensus 181 ~~n~-l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 181 DDNK-ISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CSSC-CCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCc-cCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 9964 566665 7899999999999999998875 8899999999999999876554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-20 Score=161.25 Aligned_cols=199 Identities=17% Similarity=0.204 Sum_probs=145.7
Q ss_pred HhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCCCCcCC
Q 043910 25 FTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGDGGQHH 102 (353)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~~~~~~ 102 (353)
+.++++++++++.++.++. .+..+. ..++.|++++|.++.++ .+..+++|+.|++++|.++.++.. ..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-------ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-------LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-------CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred ccccCCccEEECCCCCCCc-------CCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 4567888888888887743 222221 23888888888887665 355788888888888888877654 677
Q ss_pred CCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEE
Q 043910 103 CKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHL 181 (353)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L 181 (353)
++|+.|++++|. ++.++ ..+..+++|++|++++|...+..+..+..+++|++|++++|.++.+|.. +..+++|++|
T Consensus 77 ~~L~~L~Ls~N~-l~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 77 PVLGTLDLSHNQ-LQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp TTCCEEECCSSC-CSSCC--CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCEEECCCCc-CCcCc--hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 888888888764 33332 3567788888888888655544445677888888888888888876653 5678888888
Q ss_pred eccCCCCCcccCc-cccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc
Q 043910 182 GLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 182 ~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
++++| .++.+|. .+..+++|+.|++++|.++.+|..+....+|+.+++++|++.
T Consensus 154 ~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 154 SLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 88875 4556664 456788888888888888888887777788888888888764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-20 Score=160.27 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=6.0
Q ss_pred CceEEEccCCCccc
Q 043910 81 KLVLLEVPHSNIQQ 94 (353)
Q Consensus 81 ~L~~L~L~~~~i~~ 94 (353)
+|+.|++++|.++.
T Consensus 29 ~l~~L~ls~n~l~~ 42 (276)
T 2z62_A 29 STKNLDLSFNPLRH 42 (276)
T ss_dssp TCCEEECTTCCCCE
T ss_pred CccEEECCCCcccc
Confidence 34444444444443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=162.12 Aligned_cols=195 Identities=20% Similarity=0.187 Sum_probs=96.2
Q ss_pred cceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|++++|.++.++ .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.. +... ...+..+++|++|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLA-LGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEEC-TTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccC-hhhhcCCccccEEEC
Confidence 555555555554444 22345555555555555555443 334455555555555432 2121 224455555555555
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCcc--cCccccCCCCCCEEeccCCCCCcccCccccCCCCCC----EEEeeCc
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEE--LPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLK----FLILNGC 210 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~----~L~l~~~ 210 (353)
++|...+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|...+..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 5544333222234555555555555555553 445555555566666655432222222333333333 5556666
Q ss_pred cCCccCcccCCCCCCcEEEeeCCCCcccchh-HhhccCCceeccccc
Q 043910 211 GITQLPENLGQLFSLEEFCLRKTKFEKIPTN-VIHLSRLHSFCLSYC 256 (353)
Q Consensus 211 ~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~ 256 (353)
.++.++.......+|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 5555544444444566666666665554442 345556666666554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-19 Score=155.17 Aligned_cols=195 Identities=22% Similarity=0.285 Sum_probs=162.0
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++++++.++.+|... .++++.|++++|.++.++. .+..+++|++|+++++. ++.++ ...+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCC
Confidence 678899999999888643 4789999999999998875 56779999999999874 44443 34578899999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|......+..+..+++|++|++++|.++.+++ .+..+++|++|++++|. ++.+|. .+..+++|+.|++++|.++.++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeC
Confidence 76554444557889999999999999997765 46889999999999964 556664 5789999999999999999876
Q ss_pred c-ccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccc
Q 043910 217 E-NLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 217 ~-~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~ 258 (353)
. .+..+++|++|++++|.+..++. .+..+++|+.|++++|+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 5 47889999999999999997776 477899999999999753
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=167.67 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=159.4
Q ss_pred cCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCC-CC-----CCceEEEccCCCccccC-CC
Q 043910 27 KMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSIT-HP-----AKLVLLEVPHSNIQQLG-DG 98 (353)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~-~~-----~~L~~L~L~~~~i~~l~-~~ 98 (353)
++++|++|++++|.+++..+.... +...+ |++|++++|.++.+|..+ .+ ++|++|++++|.+..++ ..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL----EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS----SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHH----HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 699999999999999765543210 13334 999999999998876432 33 89999999999999877 56
Q ss_pred CcCCCCccEEecCCCcCcCCCCCCcc--ccCCccCcEEeecCCCCCc--ccch-hhhcCCCccEEEccCccCcccC--cc
Q 043910 99 GQHHCKLSQIITAARNFVTKTPNPSF--IRSLNKLTILNLSGCSQLK--RLPA-EILSAGNMEEMILNGTAIEELP--SS 171 (353)
Q Consensus 99 ~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~i~~l~--~~ 171 (353)
+..+++|++|++++|......+.... +..+++|++|++++|...+ .++. .+..+++|++|++++|.++..+ ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 77899999999999864321111122 3788999999999976542 3332 3457899999999999999654 35
Q ss_pred ccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcc
Q 043910 172 IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~ 237 (353)
+..+++|++|++++|. ++.+|..+. ++|+.|++++|+++.+|. +..+++|++|++++|+++.
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 6678999999999965 668887665 899999999999998887 8899999999999998863
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=163.32 Aligned_cols=216 Identities=19% Similarity=0.184 Sum_probs=170.9
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+..+.+.++.+..+.....+++|+.|+++++.+..++ .+..+++|++|++++|. ++. .+.+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~---~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHD---ISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCC---CGGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCC---chhhcCCCCCCEEECCCC
Confidence 4455556666555555557889999999999998764 47789999999999985 332 457889999999999998
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
...+..+..+..+++|++|++++|.++.+++. +..+++|++|++++|. ++.++ ..+..+++|+.|++++|.++.++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 66555555578899999999999999977664 6889999999999975 55555 457899999999999999997765
Q ss_pred c-cCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCCCCCCcceeecCCCcCccccCc
Q 043910 218 N-LGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAALESLSD 285 (353)
Q Consensus 218 ~-~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~ 285 (353)
. +..+++|+.|++++|.+..++. .+..+++|+.|++++|+.... ++.|+.++++++.--..+|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccC
Confidence 4 5889999999999999997665 468899999999999854433 45677777776654445544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=157.82 Aligned_cols=193 Identities=22% Similarity=0.217 Sum_probs=163.8
Q ss_pred ccceEeecccCCCCCCCCCCCCCceEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
.++.++++++.++.+|... .++++.|++++|.+..+. ..+..+++|+.|++++|. ++..+ ..+.+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ---VDGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEE---CCSCCTTCCEEECC
T ss_pred CccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCccc---CCCCCCcCCEEECC
Confidence 3889999999999998654 479999999999998865 456779999999999875 33332 34788999999999
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCcc
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQL 215 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~ 215 (353)
+| .+..+|..+..+++|++|++++|.++.+++ .+..+++|++|++++|. ++.+| ..+..+++|+.|++++|+++.+
T Consensus 86 ~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 96 455788888899999999999999998874 68899999999999965 55555 4578899999999999999988
Q ss_pred Ccc-cCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccc
Q 043910 216 PEN-LGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 216 ~~~-~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
|.. +..+++|+.|++++|.+..+|..+...++|+.+++++|+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 864 5779999999999999999999888899999999998753
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-20 Score=156.85 Aligned_cols=193 Identities=16% Similarity=0.187 Sum_probs=151.9
Q ss_pred ccceEeecccCCCCCCC--CCCCCCceEEEccCCC-ccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEE
Q 043910 59 EIRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSN-IQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTIL 134 (353)
Q Consensus 59 ~L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~-i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 134 (353)
.+++|++++|.++.++. +..+++|+.|++++|. ++.++. .+..+++|++|++++|+.++.++ ...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEE
Confidence 38888888888887774 4478899999999996 888775 45678899999999866666554 3467788999999
Q ss_pred eecCCCCCcccchhhhcCCCcc---EEEccCc-cCcccCc-cccCCCCCC-EEeccCCCCCcccCccccCCCCCCEEEee
Q 043910 135 NLSGCSQLKRLPAEILSAGNME---EMILNGT-AIEELPS-SIECLSRLL-HLGLRDCKRLKSLPKGLCKLKSLKFLILN 208 (353)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~l~~-~~~~l~~L~-~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 208 (353)
++++|.. ..+|. +..+++|+ .|++++| .++.++. .+..+++|+ +|++++|. ++.+|......++|+.|+++
T Consensus 111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECT
T ss_pred eCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcC
Confidence 9998654 44675 77777887 9999999 8888776 478889999 99998854 55777644444889999999
Q ss_pred Ccc-CCccC-cccCCC-CCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 209 GCG-ITQLP-ENLGQL-FSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 209 ~~~-i~~~~-~~~~~l-~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
+|. ++.++ ..+..+ ++|+.|++++|++..+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 994 88775 456778 8999999999999888775 67889999888764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-21 Score=184.08 Aligned_cols=246 Identities=14% Similarity=0.124 Sum_probs=139.9
Q ss_pred EEEeCCCccccccCHH-HHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC-CccceEeecccCCCCCC--CCC-CCC--
Q 043910 8 ICLDMSKVEEIHLYSD-TFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-PEIRYLFWHGYPLKSLP--SIT-HPA-- 80 (353)
Q Consensus 8 i~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~--~~~-~~~-- 80 (353)
..+|++.....+.... .+..+++|++|++++|.++..... ..+..+.. ..|++|++++|.++... .+. .++
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK--DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH--HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH--HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 3455555544343333 367788888888888887532110 11122222 33888888888765311 111 122
Q ss_pred --CceEEEccCCCccc-----cCCCCcCCCCccEEecCCCcCcCCCCCCcc-----ccCCccCcEEeecCCCCCcc----
Q 043910 81 --KLVLLEVPHSNIQQ-----LGDGGQHHCKLSQIITAARNFVTKTPNPSF-----IRSLNKLTILNLSGCSQLKR---- 144 (353)
Q Consensus 81 --~L~~L~L~~~~i~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~---- 144 (353)
+|++|++++|.+.. ++..+..+++|++|++++|. ++... ... ....++|++|++++|.....
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH-HHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888888763 34455677888888888775 22110 011 12245677777777655442
Q ss_pred cchhhhcCCCccEEEccCccCccc-Ccccc-----CCCCCCEEeccCCCCCcc----cCccccCCCCCCEEEeeCccCCc
Q 043910 145 LPAEILSAGNMEEMILNGTAIEEL-PSSIE-----CLSRLLHLGLRDCKRLKS----LPKGLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 145 ~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~-----~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~~ 214 (353)
++..+..+++|++|++++|.++.. +..+. ..++|++|++++|..... ++..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 344455567777777777776531 11111 245777777777543321 34445566777777777776652
Q ss_pred c------CcccCCCCCCcEEEeeCCCCcc-----cchhHhhccCCceecccccc
Q 043910 215 L------PENLGQLFSLEEFCLRKTKFEK-----IPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 215 ~------~~~~~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~ 257 (353)
. +.....+++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 1 1122345667777777776663 45556666777777776653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-21 Score=181.44 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=111.2
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC-C-ccceEeecccCCCC-----CC-CCCCCCCceEEEccCCCcc
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-P-EIRYLFWHGYPLKS-----LP-SITHPAKLVLLEVPHSNIQ 93 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~-~L~~L~l~~~~~~~-----l~-~~~~~~~L~~L~L~~~~i~ 93 (353)
+..+..+++|++|++++|.+.+.... .....+.. . .|++|++++|.++. ++ .+..+++|+.|++++|.+.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVH--CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHH--HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHH--HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 45677889999999999887542221 11122221 1 38899999888763 23 3446788888888888876
Q ss_pred ccC-----CC-CcCCCCccEEecCCCcCcCCCC---CCccccCCccCcEEeecCCCCCcccchhhh-----cCCCccEEE
Q 043910 94 QLG-----DG-GQHHCKLSQIITAARNFVTKTP---NPSFIRSLNKLTILNLSGCSQLKRLPAEIL-----SAGNMEEMI 159 (353)
Q Consensus 94 ~l~-----~~-~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~ 159 (353)
... .. ....++|++|++++|.. +... ....+..+++|++|++++|......+..+. ..++|++|+
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCC-BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCC-CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 421 11 11245688888877742 2111 011344556677777766543222122221 234566666
Q ss_pred ccCccCcc-----cCccccCCCCCCEEeccCCCCCccc------CccccCCCCCCEEEeeCccCCc-----cCcccCCCC
Q 043910 160 LNGTAIEE-----LPSSIECLSRLLHLGLRDCKRLKSL------PKGLCKLKSLKFLILNGCGITQ-----LPENLGQLF 223 (353)
Q Consensus 160 l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~l------~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~ 223 (353)
+++|.++. ++..+..+++|++|++++|. ++.. +..+..+++|++|++++|.++. ++..+..++
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 66665553 34444555556666665543 2211 1111234555555555555542 343344444
Q ss_pred CCcEEEeeCCCC
Q 043910 224 SLEEFCLRKTKF 235 (353)
Q Consensus 224 ~L~~L~l~~~~l 235 (353)
+|++|++++|.+
T Consensus 285 ~L~~L~Ls~n~i 296 (461)
T 1z7x_W 285 SLKELSLAGNEL 296 (461)
T ss_dssp TCCEEECTTCCC
T ss_pred CcceEECCCCCC
Confidence 555555555544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-21 Score=174.30 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=12.0
Q ss_pred CceEEEccCCCccccCCCCcCCCCccEEecCC
Q 043910 81 KLVLLEVPHSNIQQLGDGGQHHCKLSQIITAA 112 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~ 112 (353)
+++.+++++|.+.+.......+++|++|++++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 102 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccC
Confidence 33344444333333333333333333333333
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-19 Score=158.61 Aligned_cols=233 Identities=19% Similarity=0.244 Sum_probs=111.5
Q ss_pred EeecccCCCCCCCCCCCCCceEEEccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC
Q 043910 63 LFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ 141 (353)
Q Consensus 63 L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 141 (353)
++-++++++.+|... .+++++|+|++|+|+.++.. +..+++|++|++++|...+.++ ..+|.++++++++...+++.
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCc
Confidence 333444455555322 34555555555555555542 3445555555555554332222 23444555554433322223
Q ss_pred Cccc-chhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCC-CCCCEEEeeCccCCccCc
Q 043910 142 LKRL-PAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKL-KSLKFLILNGCGITQLPE 217 (353)
Q Consensus 142 ~~~~-~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l-~~L~~L~l~~~~i~~~~~ 217 (353)
+..+ |..+..+++|++|++++|.++.++. .+....++..+++.++..+..++. .+..+ ..++.|++++|.++.++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 3333 3344555555555555555554443 222334455555555444554443 23333 235555555555555555
Q ss_pred ccCCCCCCcEEEeeC-CCCcccch-hHhhccCCceeccccccccccCCC-CCCCcceeecCCCcCccccCcccccccccc
Q 043910 218 NLGQLFSLEEFCLRK-TKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK-LPCNLKELDADHCAALESLSDLFSISYDYY 294 (353)
Q Consensus 218 ~~~~l~~L~~L~l~~-~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 294 (353)
......+|+++++.+ |.++.+|. .+.++++|+.|++++| .++.+|. .+.+|+.|.+.++..++.+|.. ...++
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l---~~l~~ 247 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTL---EKLVA 247 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCT---TTCCS
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCc---hhCcC
Confidence 444445555555543 34445544 3345555666665553 3445543 3455555555555555555532 22344
Q ss_pred ccEEEec
Q 043910 295 IRCFELS 301 (353)
Q Consensus 295 l~~l~~~ 301 (353)
|+.+++.
T Consensus 248 L~~l~l~ 254 (350)
T 4ay9_X 248 LMEASLT 254 (350)
T ss_dssp CCEEECS
T ss_pred hhhCcCC
Confidence 4555543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-20 Score=164.75 Aligned_cols=196 Identities=13% Similarity=0.036 Sum_probs=108.4
Q ss_pred CCCceEEEccCCCccccC-CCC--cCCCCccEEecCCCcCcCCCCCC--ccccCCccCcEEeecCCCCCcccchhhhcCC
Q 043910 79 PAKLVLLEVPHSNIQQLG-DGG--QHHCKLSQIITAARNFVTKTPNP--SFIRSLNKLTILNLSGCSQLKRLPAEILSAG 153 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~-~~~--~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 153 (353)
.++|++|++++|.+.+.. ..+ ..+++|+.|++++|..-...+.. ..+..+++|++|++++|...+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 345666666666665433 222 45666666666665422111100 1233566666777766655444445566666
Q ss_pred CccEEEccCccCcc---cCc--cccCCCCCCEEeccCCCCCcccCc----cccCCCCCCEEEeeCccCCcc-CcccCCC-
Q 043910 154 NMEEMILNGTAIEE---LPS--SIECLSRLLHLGLRDCKRLKSLPK----GLCKLKSLKFLILNGCGITQL-PENLGQL- 222 (353)
Q Consensus 154 ~L~~L~l~~~~i~~---l~~--~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~i~~~-~~~~~~l- 222 (353)
+|++|++++|.+.. ++. .+..+++|++|++++|. ++.++. .+..+++|++|++++|.++.. |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 67777776666542 221 23456666667766643 333332 134566667777777666644 5444444
Q ss_pred --CCCcEEEeeCCCCcccchhHhhccCCceeccccccccc-cCCCCCCCcceeecCCC
Q 043910 223 --FSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQ-SLPKLPCNLKELDADHC 277 (353)
Q Consensus 223 --~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~-~l~~~~~~L~~L~l~~c 277 (353)
++|++|++++|.+..+|..+. ++|+.|++++|...+ ..+..+++|+.|+++++
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 466777777776666665442 566677776653322 22334566666666665
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-20 Score=173.46 Aligned_cols=234 Identities=13% Similarity=0.088 Sum_probs=167.2
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC------------CCCCCCceEEEcc
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS------------ITHPAKLVLLEVP 88 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~------------~~~~~~L~~L~L~ 88 (353)
..++..+++|++|++++|.++...+.. ....+...+ |++|++++|.+..+.. +..+++|+.|+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~--l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARW--LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHH--HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHH--HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 467788999999999999876532211 122233333 9999999987654421 1467899999999
Q ss_pred CCCccc-----cCCCCcCCCCccEEecCCCcCcCCCCC---CccccCC---------ccCcEEeecCCCCC-cccc---h
Q 043910 89 HSNIQQ-----LGDGGQHHCKLSQIITAARNFVTKTPN---PSFIRSL---------NKLTILNLSGCSQL-KRLP---A 147 (353)
Q Consensus 89 ~~~i~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~ 147 (353)
+|.+.. ++..+..+++|+.|++++|.. +.... ...+..+ ++|++|++++|... ..++ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 998876 444556788999999998853 21100 0123333 78999999987654 3344 4
Q ss_pred hhhcCCCccEEEccCccCc--c----cCccccCCCCCCEEeccCCCCC----cccCccccCCCCCCEEEeeCccCCc---
Q 043910 148 EILSAGNMEEMILNGTAIE--E----LPSSIECLSRLLHLGLRDCKRL----KSLPKGLCKLKSLKFLILNGCGITQ--- 214 (353)
Q Consensus 148 ~~~~~~~L~~L~l~~~~i~--~----l~~~~~~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~i~~--- 214 (353)
.+..+++|+.|++++|.++ . ++..+..+++|++|++++|... ..+|..+..+++|+.|++++|.++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 5667889999999999887 2 3336778899999999986642 4566677888999999999998873
Q ss_pred --cCccc--CCCCCCcEEEeeCCCCcc-----cchhH-hhccCCceeccccccc
Q 043910 215 --LPENL--GQLFSLEEFCLRKTKFEK-----IPTNV-IHLSRLHSFCLSYCER 258 (353)
Q Consensus 215 --~~~~~--~~l~~L~~L~l~~~~l~~-----l~~~l-~~l~~L~~L~l~~~~~ 258 (353)
++..+ +.+++|+.|++++|.+.. ++..+ .++++|++|++++|..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 35555 348889999999999885 77766 5688999999988754
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-20 Score=164.90 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=136.0
Q ss_pred CCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC-CCCCCCCceEEEccCCCccc--cCCCCcCCCCcc
Q 043910 30 KLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQ--LGDGGQHHCKLS 106 (353)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~i~~--l~~~~~~~~~L~ 106 (353)
.++.++++++.+.... ...+....++.++++++.+...+ ..+.+++|+.|++++|.+.. ++..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~~~~------~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDV------TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCCHHH------HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCCHHH------HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 3667777766553110 00000122667777777655433 45567777777777777653 444456677777
Q ss_pred EEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCc--ccchhhhcCCCccEEEccCc-cCcc--cCccccCCC-CCCE
Q 043910 107 QIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLK--RLPAEILSAGNMEEMILNGT-AIEE--LPSSIECLS-RLLH 180 (353)
Q Consensus 107 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~-~i~~--l~~~~~~l~-~L~~ 180 (353)
+|++++|. +++. ....++.+++|++|++++|..++ .++..+..+++|++|++++| .++. ++..+..++ +|++
T Consensus 122 ~L~L~~~~-l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 122 NLSLEGLR-LSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp EEECTTCB-CCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred EEeCcCcc-cCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 88777774 2211 12355667778888887774333 25555667777888888777 7763 556667777 7888
Q ss_pred EeccCCC-CC--cccCccccCCCCCCEEEeeCcc-CC-ccCcccCCCCCCcEEEeeCCC-Cc-ccchhHhhccCCceecc
Q 043910 181 LGLRDCK-RL--KSLPKGLCKLKSLKFLILNGCG-IT-QLPENLGQLFSLEEFCLRKTK-FE-KIPTNVIHLSRLHSFCL 253 (353)
Q Consensus 181 L~l~~~~-~~--~~l~~~~~~l~~L~~L~l~~~~-i~-~~~~~~~~l~~L~~L~l~~~~-l~-~l~~~l~~l~~L~~L~l 253 (353)
|++++|. .+ ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+.++++|+.|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 8887763 23 2345555667778888887777 44 445556777778888887774 32 22224567777888888
Q ss_pred ccc
Q 043910 254 SYC 256 (353)
Q Consensus 254 ~~~ 256 (353)
++|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 776
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=145.50 Aligned_cols=173 Identities=22% Similarity=0.310 Sum_probs=137.7
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++++++.++.+|... .++++.|++++|.+..+.. .+..+++|++|++++|. ++... ...+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLS-AGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccC-HhHhccCCcCCEEECCC
Confidence 678889999998888654 3789999999999988765 46678999999999874 44333 34578889999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|......+..+..+++|++|++++|.++.++.. +..+++|++|++++| .++.++. .+..+++|+.|++++|.++.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 766554445677889999999999999977764 578899999999985 4555654 6788899999999999988776
Q ss_pred c-ccCCCCCCcEEEeeCCCCc
Q 043910 217 E-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 217 ~-~~~~l~~L~~L~l~~~~l~ 236 (353)
. .+..+++|+.|++++|++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 4 5778889999999999876
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=161.78 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=150.1
Q ss_pred HHhcCC-----CCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC
Q 043910 24 TFTKMR-----KLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG 98 (353)
Q Consensus 24 ~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~ 98 (353)
.+.+++ +|+.|++++|.+++ .+ ..+ ...|++|++++|.++.+| ..+++|+.|++++|.++.++.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-lp------~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS-LP------DNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE- 117 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC-CC------SCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-
T ss_pred hhhhccccccCCccEEEeCCCCCCc-cC------HhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-
Confidence 455554 89999999998865 22 222 134999999999999888 557899999999999998876
Q ss_pred CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCC
Q 043910 99 GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRL 178 (353)
Q Consensus 99 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L 178 (353)
+.. +|+.|++++|. ++.++ . .+++|++|++++|... .+|. .+++|+.|++++|.++.+|. +. ++|
T Consensus 118 l~~--~L~~L~Ls~N~-l~~lp---~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L 182 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQ-LTMLP---E--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESL 182 (571)
T ss_dssp CCT--TCCEEECCSSC-CSCCC---C--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTC
T ss_pred hhc--CCCEEECCCCc-CCCCC---C--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCC
Confidence 333 99999999874 44443 2 6789999999996544 4665 57899999999999998887 55 899
Q ss_pred CEEeccCCCCCcccCccccCCCCC-------CEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-ccchhHhhcc
Q 043910 179 LHLGLRDCKRLKSLPKGLCKLKSL-------KFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLS 246 (353)
Q Consensus 179 ~~L~l~~~~~~~~l~~~~~~l~~L-------~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~ 246 (353)
++|++++| .++.+|. +.. +| +.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++
T Consensus 183 ~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 183 EALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 99999985 5667877 544 67 9999999999999988888999999999999987 6676666654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-19 Score=156.95 Aligned_cols=195 Identities=17% Similarity=0.162 Sum_probs=105.2
Q ss_pred CCccEEecCCCcCcCCCCCCccc--cCCccCcEEeecCCCCCcccc----hhhhcCCCccEEEccCccCcccC-ccccCC
Q 043910 103 CKLSQIITAARNFVTKTPNPSFI--RSLNKLTILNLSGCSQLKRLP----AEILSAGNMEEMILNGTAIEELP-SSIECL 175 (353)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l 175 (353)
++|++|++++|.... .. ...+ ..+++|++|++++|...+..+ ..+..+++|++|++++|.++.++ ..+..+
T Consensus 91 ~~L~~L~l~~n~l~~-~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITG-TM-PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBS-CC-CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEecc-ch-hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 456666666654321 21 1222 556666666666655444322 22334666666666666666443 355566
Q ss_pred CCCCEEeccCCCCCcc--cC--ccccCCCCCCEEEeeCccCCccCcc----cCCCCCCcEEEeeCCCCccc-chhHhhc-
Q 043910 176 SRLLHLGLRDCKRLKS--LP--KGLCKLKSLKFLILNGCGITQLPEN----LGQLFSLEEFCLRKTKFEKI-PTNVIHL- 245 (353)
Q Consensus 176 ~~L~~L~l~~~~~~~~--l~--~~~~~l~~L~~L~l~~~~i~~~~~~----~~~l~~L~~L~l~~~~l~~l-~~~l~~l- 245 (353)
++|++|++++|...+. ++ ..+..+++|++|++++|.++.++.. ++.+++|++|++++|.+... |..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 6666666666543321 21 1234566666666666666544331 34556666666666666643 4444444
Q ss_pred --cCCceeccccccccccCCCC-CCCcceeecCCCcCccccCccccccccccccEEEecCCc
Q 043910 246 --SRLHSFCLSYCERLQSLPKL-PCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 246 --~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
++|++|++++|. ++.+|.. +++|+.|+++++ .++.++.. ..+++|+.|++++++
T Consensus 249 ~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~---~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQP---DELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCCT---TSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCchh---hhCCCccEEECcCCC
Confidence 466666666643 3355542 356666666665 34444331 234556666666653
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=142.44 Aligned_cols=170 Identities=21% Similarity=0.259 Sum_probs=73.6
Q ss_pred ceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEcc
Q 043910 82 LVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILN 161 (353)
Q Consensus 82 L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 161 (353)
.+.++++++.++.++..+. ++++.|+++++. ++... ...+..+++|++|++++|...+..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3444444444444443322 344445554432 11111 1234444455555555443333333334444455555555
Q ss_pred CccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCccc
Q 043910 162 GTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 162 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l 238 (353)
+|.++.++. .+..+++|++|++++| .++.++. .+..+++|+.|++++|.++.++. .+..+++|++|++++|.+..+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 554444332 2344445555555443 2333332 23444455555555554444433 244444555555555544433
Q ss_pred ch-hHhhccCCceeccccc
Q 043910 239 PT-NVIHLSRLHSFCLSYC 256 (353)
Q Consensus 239 ~~-~l~~l~~L~~L~l~~~ 256 (353)
+. .+..+++|+.|++++|
T Consensus 171 ~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC
T ss_pred CHHHHhCCCCCCEEEeeCC
Confidence 32 3344444555555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-18 Score=148.13 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=80.1
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|+++++.++.++.+..+++|+.|++++|.++.++. +..+++|+.|++++|. ++ ..+.+..+++|++|++++|
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~---~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VK---DLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CC---CGGGGTTCTTCCEEECTTS
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CC---CChhhccCCCCCEEECCCC
Confidence 55555555555555444445555555555555554443 4445555555555442 11 1223445555555555554
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. ..++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|. ++.++. +..+++|+.|++++|.++.++. +
T Consensus 123 ~i-~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l 196 (291)
T 1h6t_A 123 GI-SDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-L 196 (291)
T ss_dssp CC-CCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred cC-CCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCCChh-h
Confidence 32 2222 244455555555555555544 344455555555555432 333332 4455555555555555554433 4
Q ss_pred CCCCCCcEEEeeCCCCc
Q 043910 220 GQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~ 236 (353)
..+++|+.|++++|++.
T Consensus 197 ~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCSEEEEEEEEEE
T ss_pred ccCCCCCEEECcCCccc
Confidence 44555555555555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=150.88 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=153.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+..+.+....++.+.....+++|+.|++++|.+..++ .+..+++|+.|++++|. ++.. +.+..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDI---KPLANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCC---cccccCCCCCEEECCCC
Confidence 3334455555555555556889999999999998885 47789999999999884 3333 34889999999999997
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. ..++. +..+++|++|++++|.++.+ +.+..+++|++|++++|. ++.+ ..+..+++|+.|++++|.++.++. +
T Consensus 101 ~l-~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l 174 (291)
T 1h6t_A 101 KV-KDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-L 174 (291)
T ss_dssp CC-CCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred cC-CCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh-h
Confidence 54 44554 88999999999999999987 468889999999999864 5555 468899999999999999998876 8
Q ss_pred CCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 258 (353)
..+++|+.|++++|.+..++. +..+++|+.|++++|+.
T Consensus 175 ~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 899999999999999998865 78899999999999753
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=159.06 Aligned_cols=182 Identities=20% Similarity=0.285 Sum_probs=151.3
Q ss_pred ccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 59 EIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.++.|+++++.++.+|... +++|+.|++++|.++.++ ..+++|+.|++++|. ++.++. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~---l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE---LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch---hhc--CCCEEECCC
Confidence 4889999999999998644 489999999999999887 457999999999984 444432 433 999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPEN 218 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~ 218 (353)
|... .+|. .+++|+.|++++|.++.+|. .+++|++|++++|. ++.+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLT-MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCC-CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 7554 4776 68999999999999999886 57899999999964 666887 65 899999999999999888
Q ss_pred cCCCCCC-------cEEEeeCCCCcccchhHhhccCCceeccccccccccCCC
Q 043910 219 LGQLFSL-------EEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK 264 (353)
Q Consensus 219 ~~~l~~L-------~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~ 264 (353)
+.. +| +.|++++|.++.+|..+..+++|+.|++++|+..+.+|.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 554 77 999999999999999898999999999999876555443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-18 Score=140.68 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=105.6
Q ss_pred CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccE
Q 043910 78 HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157 (353)
Q Consensus 78 ~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 157 (353)
.+++|+.|++++|.++.++ .+..+++|+.|++++| .++ ..+.+..+++|++|++++|......+..+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 4567777777777777665 5666777777777776 222 2346677778888888886665555666777778888
Q ss_pred EEccCccCcc-cCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc
Q 043910 158 MILNGTAIEE-LPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 158 L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
|++++|.++. .+..+..+++|++|++++|..++.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 8888887773 55667777788888887765466665 4677777777777777777666 4667777777777777654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=148.43 Aligned_cols=212 Identities=15% Similarity=0.130 Sum_probs=125.3
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCccc-cCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEe
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQ-LGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILN 135 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~-l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 135 (353)
+++|++++|+++.+|. +..+++|+.|+|++|.+.+ ++.. +..+++++++....++.++.++ ...+..+++|++|+
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLL 110 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccccccc
Confidence 6777777777776663 3366777777777776643 4432 3446666665555555555443 34566677777777
Q ss_pred ecCCCCCcccchhhhcCCCccEEEccC-ccCcccCc-cccCC-CCCCEEeccCCCCCcccCccccCCCCCCEEEeeC-cc
Q 043910 136 LSGCSQLKRLPAEILSAGNMEEMILNG-TAIEELPS-SIECL-SRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG-CG 211 (353)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~l~~-~~~~l-~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~-~~ 211 (353)
+++|......+..+....++..+++.+ +.+..++. .+..+ ..+++|++++ +.++.++.......+|+.+++.+ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCc
Confidence 777544333333344455666666654 35555544 23333 3566677776 34555665554556677777754 45
Q ss_pred CCccCc-ccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCC--CCCCcceeecC
Q 043910 212 ITQLPE-NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK--LPCNLKELDAD 275 (353)
Q Consensus 212 i~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~ 275 (353)
++.+|. .+..+++|+.|++++|+++.+|.. .+.+|+.|.+.++..++.+|. .+++|+.+++.
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 666664 356677777777777777766652 345566666666666666664 34566666664
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-20 Score=177.21 Aligned_cols=279 Identities=14% Similarity=0.071 Sum_probs=149.5
Q ss_pred hcCCCCcEEEeeeCCCCCCccceeecCCCC-CCCccceEeecccCCCCCC-----C-CCCCCCceEEEccCCCccccCCC
Q 043910 26 TKMRKLRFLKFYNSSINGENKCKVSNIQDP-VFPEIRYLFWHGYPLKSLP-----S-ITHPAKLVLLEVPHSNIQQLGDG 98 (353)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~-----~-~~~~~~L~~L~L~~~~i~~l~~~ 98 (353)
..+++|++|++++|.+++..... ..... ....|++|+++++.++.+. . ...+++|+.|++++|.+..++..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~--l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKW--LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHH--HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred hhCCCCCEEECccccccCcchhH--HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 46888888888888664321100 00001 1233777777777765332 1 11467777777777766543322
Q ss_pred C---------------------------cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-hhhh
Q 043910 99 G---------------------------QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-AEIL 150 (353)
Q Consensus 99 ~---------------------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 150 (353)
+ ..+++|+.+++.++. .......+..+++|++|++++|....... ..+.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG---PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC---TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc---hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence 2 333444444444431 11112345677888888888876332222 3346
Q ss_pred cCCCccEEEccCccCc--ccCccccCCCCCCEEeccC----------CCCCcc--cCccccCCCCCCEEEeeCccCCc-c
Q 043910 151 SAGNMEEMILNGTAIE--ELPSSIECLSRLLHLGLRD----------CKRLKS--LPKGLCKLKSLKFLILNGCGITQ-L 215 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~----------~~~~~~--l~~~~~~l~~L~~L~l~~~~i~~-~ 215 (353)
.+++|+.|+++ +.+. .++.....+++|++|++++ |+.++. ++.....+++|++|+++.+.++. .
T Consensus 316 ~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 316 KCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred hCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 67888888887 3333 3444445677788888874 555543 22223456777777776666652 2
Q ss_pred CcccC-CCCCCcEEEee----CCCCcc------cchhHhhccCCceeccccccc-c-----ccCCCCCCCcceeecCCCc
Q 043910 216 PENLG-QLFSLEEFCLR----KTKFEK------IPTNVIHLSRLHSFCLSYCER-L-----QSLPKLPCNLKELDADHCA 278 (353)
Q Consensus 216 ~~~~~-~l~~L~~L~l~----~~~l~~------l~~~l~~l~~L~~L~l~~~~~-l-----~~l~~~~~~L~~L~l~~c~ 278 (353)
+..+. .+++|+.|+++ .+.++. ++..+.++++|++|+++.|.. + ..+...+++|+.|++++|.
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 22232 25677777775 334443 233355567777777755432 1 1122234566666666553
Q ss_pred CccccCccccccccccccEEEecCCccCchHHHH
Q 043910 279 ALESLSDLFSISYDYYIRCFELSTNYKLDRNELR 312 (353)
Q Consensus 279 ~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~ 312 (353)
+++.........+++|+.|++++|. +++....
T Consensus 475 -l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 506 (592)
T 3ogk_B 475 -ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA 506 (592)
T ss_dssp -SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH
T ss_pred -CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH
Confidence 4433322233445566666666665 4444333
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-19 Score=162.98 Aligned_cols=224 Identities=15% Similarity=0.105 Sum_probs=110.1
Q ss_pred CCCCceEEEccCCCcccc-----CCCCcCCCCccEEecCCCc--CcCCCCCCc-------cccCCccCcEEeecCCCCCc
Q 043910 78 HPAKLVLLEVPHSNIQQL-----GDGGQHHCKLSQIITAARN--FVTKTPNPS-------FIRSLNKLTILNLSGCSQLK 143 (353)
Q Consensus 78 ~~~~L~~L~L~~~~i~~l-----~~~~~~~~~L~~L~l~~~~--~l~~~~~~~-------~~~~l~~L~~L~l~~~~~~~ 143 (353)
.+++|+.|++++|.+... ...+..+++|+.|++++|. .++... +. .+..+++|++|++++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~-~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI-PEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS-HHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccch-hHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 345566666666555431 1223445566666665541 111100 00 12455666666666654433
Q ss_pred ----ccchhhhcCCCccEEEccCccCcc-----cCccccCC---------CCCCEEeccCCCCC-cccC---ccccCCCC
Q 043910 144 ----RLPAEILSAGNMEEMILNGTAIEE-----LPSSIECL---------SRLLHLGLRDCKRL-KSLP---KGLCKLKS 201 (353)
Q Consensus 144 ----~~~~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~l---------~~L~~L~l~~~~~~-~~l~---~~~~~l~~ 201 (353)
.++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|... ..++ ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 244455556666666666665542 22222223 56666666664432 1222 23445556
Q ss_pred CCEEEeeCccCC--c----cCcccCCCCCCcEEEeeCCCC-----cccchhHhhccCCceecccccccccc----CCC--
Q 043910 202 LKFLILNGCGIT--Q----LPENLGQLFSLEEFCLRKTKF-----EKIPTNVIHLSRLHSFCLSYCERLQS----LPK-- 264 (353)
Q Consensus 202 L~~L~l~~~~i~--~----~~~~~~~l~~L~~L~l~~~~l-----~~l~~~l~~l~~L~~L~l~~~~~l~~----l~~-- 264 (353)
|+.|++++|.++ . .+..+..+++|+.|++++|.+ ..++..+..+++|++|++++|..-.. ++.
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 666666666655 1 222455556666666666665 23455555666666666666542111 121
Q ss_pred ---CCCCcceeecCCCcCccc-----cCccccccccccccEEEecCCc
Q 043910 265 ---LPCNLKELDADHCAALES-----LSDLFSISYDYYIRCFELSTNY 304 (353)
Q Consensus 265 ---~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~l~~l~~~~c~ 304 (353)
.+++|+.|++++|. ++. ++.... ..+++|+.|++++|+
T Consensus 269 ~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNE-IELDAVRTLKTVID-EKMPDLLFLELNGNR 314 (386)
T ss_dssp HTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH-HHCTTCCEEECTTSB
T ss_pred hhccCCCeEEEECcCCc-CCHHHHHHHHHHHH-hcCCCceEEEccCCc
Confidence 14556666666653 333 322211 123556666666664
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-19 Score=169.80 Aligned_cols=282 Identities=16% Similarity=0.083 Sum_probs=160.7
Q ss_pred HHHHhc-CCC-CcEEEeeeCCCCCCccceeecCCCC-CCCccceEeecccCCCCCCC------CCCCCCceEEEccCCCc
Q 043910 22 SDTFTK-MRK-LRFLKFYNSSINGENKCKVSNIQDP-VFPEIRYLFWHGYPLKSLPS------ITHPAKLVLLEVPHSNI 92 (353)
Q Consensus 22 ~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~------~~~~~~L~~L~L~~~~i 92 (353)
...+.. +++ |++|++++|... .. ....... ..+.|++|++++|.+..... ...+++|+.|++++|.+
T Consensus 129 ~~~l~~~~~~~L~~L~L~~~~~~--~~--~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~ 204 (592)
T 3ogk_B 129 LDRLAKARADDLETLKLDKCSGF--TT--DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204 (592)
T ss_dssp HHHHHHHHGGGCCEEEEESCEEE--EH--HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC
T ss_pred HHHHHHhccccCcEEECcCCCCc--CH--HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC
Confidence 344444 444 999999998621 10 0111111 22449999999998654331 12578999999999988
Q ss_pred cc-----cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC--------------------------CC
Q 043910 93 QQ-----LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC--------------------------SQ 141 (353)
Q Consensus 93 ~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~--------------------------~~ 141 (353)
+. ++.....+++|+.|++++|.. ... ...+..+++|++|+++.+ ..
T Consensus 205 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (592)
T 3ogk_B 205 AKISPKDLETIARNCRSLVSVKVGDFEI-LEL--VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281 (592)
T ss_dssp SSCCHHHHHHHHHHCTTCCEEECSSCBG-GGG--HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC
T ss_pred CccCHHHHHHHHhhCCCCcEEeccCccH-HHH--HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc
Confidence 63 333345689999999999753 111 123444455555554431 12
Q ss_pred CcccchhhhcCCCccEEEccCccCc--ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeC----------
Q 043910 142 LKRLPAEILSAGNMEEMILNGTAIE--ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG---------- 209 (353)
Q Consensus 142 ~~~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~---------- 209 (353)
...+|..+..+++|++|++++|.++ .++..+..+++|++|+++.+.....++.....+++|++|++++
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 2334444455666666666666654 2223345666666666663211112233334566777777773
Q ss_pred -ccCC--ccCcccCCCCCCcEEEeeCCCCc-ccchhHhh-ccCCceecccc---ccccccCCC---------CCCCccee
Q 043910 210 -CGIT--QLPENLGQLFSLEEFCLRKTKFE-KIPTNVIH-LSRLHSFCLSY---CERLQSLPK---------LPCNLKEL 272 (353)
Q Consensus 210 -~~i~--~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~-l~~L~~L~l~~---~~~l~~l~~---------~~~~L~~L 272 (353)
+.++ .++.....+++|++|+++.+.++ ..+..+.. +++|+.|++++ |+.++..|. .+++|+.|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 3444 22332344677777777767666 33344443 77788887763 445554321 25678888
Q ss_pred ecCCCcC-ccccCccccccccccccEEEecCCccCchHHH
Q 043910 273 DADHCAA-LESLSDLFSISYDYYIRCFELSTNYKLDRNEL 311 (353)
Q Consensus 273 ~l~~c~~-l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~ 311 (353)
++++|.+ +++.........+++|+.|++++|. +++...
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 480 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL 480 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence 8876654 4444333333446778888888774 555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=159.51 Aligned_cols=169 Identities=19% Similarity=0.247 Sum_probs=131.1
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|+.|+++++.+..++.+..+++|+.|+|++|.+..++. +..+++|+.|++++|. ++. .+.+..+++|++|++++|
T Consensus 45 L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~---l~~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKD---LSSLKDLKKLKSLSLEHN 119 (605)
T ss_dssp CCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCC---CTTSTTCTTCCEEECTTS
T ss_pred CCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCC---ChhhccCCCCCEEEecCC
Confidence 88888888888888877788889999998888887765 6778888888888874 332 346778888888888886
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
... .++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|. +..+++ +..+++|+.|++++|.++.++. +
T Consensus 120 ~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~-l 193 (605)
T 1m9s_A 120 GIS-DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-L 193 (605)
T ss_dssp CCC-CCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred CCC-CCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCCCCChH-H
Confidence 543 343 477888888888888888877 567788888888888864 444444 7788888888888888887754 7
Q ss_pred CCCCCCcEEEeeCCCCcccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIP 239 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~ 239 (353)
..+++|+.|++++|.+...|
T Consensus 194 ~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCTTCSEEECCSEEEECCC
T ss_pred ccCCCCCEEEccCCcCcCCc
Confidence 78888888888888776443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=155.69 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=177.3
Q ss_pred HHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCcccc---CCCCc
Q 043910 24 TFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQL---GDGGQ 100 (353)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l---~~~~~ 100 (353)
.+..+.+|+.|++.+|.+.... ......++.+.+.++.....+....+++|+.+++++|.+... +....
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~--------~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFP--------TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCC--------CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccchhhhhhhcccccccCcC--------cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 3566788999999998764321 112233888888888877777777889999999999887643 22344
Q ss_pred CCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCccc-CccccCCCCC
Q 043910 101 HHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEEL-PSSIECLSRL 178 (353)
Q Consensus 101 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L 178 (353)
...+++.+++..+..... ...+..+++|+.+++..++.....+ ..+..+.+++.++++.|.+..+ +..+..++++
T Consensus 395 ~~~~L~~L~~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp SCSCCCEEECCSCSEEEE---CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhccccccccc---cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 577888888887754321 2356678888888888766544433 3466788888899988888844 4456778888
Q ss_pred CEEeccCCCCCcc-cCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceecccc
Q 043910 179 LHLGLRDCKRLKS-LPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSY 255 (353)
Q Consensus 179 ~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~ 255 (353)
++|++++|..... .|..+..+++|++|++++|+++.+ |..+..+++|++|++++|++..++. .+.++++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 9999988765543 556788888899999999888865 4567888889999999998886644 577888899999988
Q ss_pred ccccccCCCC----CCCcceeecCCCc
Q 043910 256 CERLQSLPKL----PCNLKELDADHCA 278 (353)
Q Consensus 256 ~~~l~~l~~~----~~~L~~L~l~~c~ 278 (353)
|...+..|.. +++|+.|++++++
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 6544433432 3578888888754
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-17 Score=156.09 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=87.7
Q ss_pred cCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCc
Q 043910 27 KMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKL 105 (353)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L 105 (353)
.+++|+.|++++|.+... +.+..++ |+.|+|++|.+..++.+..+++|+.|+|++|.+..++ .+..+++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l--------~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--------QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--------TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred cCCCCCEEECcCCCCCCC--------hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 455555555555554321 1222233 5566666655555555445556666666665555543 34455556
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccC
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 185 (353)
+.|++++|. ++ ..+.+..+++|+.|++++|... .+ ..+..+++|+.|++++|.++.+++ +..+++|+.|++++
T Consensus 112 ~~L~Ls~N~-l~---~l~~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 112 KSLSLEHNG-IS---DINGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp CEEECTTSC-CC---CCGGGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CEEEecCCC-CC---CCccccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcC
Confidence 666665553 11 1234555556666666554332 22 235555556666666665555443 55555666666655
Q ss_pred CCCCcccCccccCCCCCCEEEeeCccCCc
Q 043910 186 CKRLKSLPKGLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 186 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~ 214 (353)
| .++.++ .+..+++|+.|++++|.+..
T Consensus 185 N-~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 185 N-HISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp S-CCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred C-CCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 3 233343 35555556666666555543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=132.33 Aligned_cols=146 Identities=21% Similarity=0.276 Sum_probs=88.3
Q ss_pred ccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCC
Q 043910 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSL 202 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L 202 (353)
+..+++|++|++++|...+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcC
Confidence 44555566666665433322222345566666666666666655543 4566777777777643 444443 45667777
Q ss_pred CEEEeeCccCCccCcc-cCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcceeecCCCc
Q 043910 203 KFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCA 278 (353)
Q Consensus 203 ~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~ 278 (353)
+.|++++|.++.++.. +..+++|+.|++++|.+. +.+++|+.|++..|...+.+|.....+.. ++..|.
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~-~~~~C~ 196 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP-DSAKCS 196 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT-TCSBBT
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC-Cccccc
Confidence 7777777777766543 566777778887777653 24556777777777666677765554433 344443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-18 Score=155.85 Aligned_cols=243 Identities=12% Similarity=0.061 Sum_probs=133.9
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCC-CC-ccceEeecccCCCCCC--CCCC-----CC
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPV-FP-EIRYLFWHGYPLKSLP--SITH-----PA 80 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~-~L~~L~l~~~~~~~l~--~~~~-----~~ 80 (353)
++++........++.+...++|++|++++|.+++...... ...+. .+ .|++|++++|.++... .+.. .+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l--~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVEL--IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHH--HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHH--HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4555555445555666666668888888888755332100 01111 22 3777777777766543 1222 26
Q ss_pred CceEEEccCCCccccCCC-----CcCC-CCccEEecCCCcCcCCCCCCcc----ccC-CccCcEEeecCCCCCc----cc
Q 043910 81 KLVLLEVPHSNIQQLGDG-----GQHH-CKLSQIITAARNFVTKTPNPSF----IRS-LNKLTILNLSGCSQLK----RL 145 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~~-----~~~~-~~L~~L~l~~~~~l~~~~~~~~----~~~-l~~L~~L~l~~~~~~~----~~ 145 (353)
+|+.|++++|.++..... +..+ ++|+.|++++|. ++... ... +.. .++|++|++++|.... .+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 777777777777654321 2233 677777777764 23222 111 222 2477777777765442 22
Q ss_pred chhhhcCC-CccEEEccCccCcccCc-----cccCC-CCCCEEeccCCCCCcc-----cCccccC-CCCCCEEEeeCccC
Q 043910 146 PAEILSAG-NMEEMILNGTAIEELPS-----SIECL-SRLLHLGLRDCKRLKS-----LPKGLCK-LKSLKFLILNGCGI 212 (353)
Q Consensus 146 ~~~~~~~~-~L~~L~l~~~~i~~l~~-----~~~~l-~~L~~L~l~~~~~~~~-----l~~~~~~-l~~L~~L~l~~~~i 212 (353)
+..+...+ +|++|++++|.++.... .+..+ ++|++|++++|. ++. ++..+.. .++|++|++++|.+
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 33334444 77777777777764322 33344 477777777754 333 3333433 34677777777776
Q ss_pred CccC-----cccCCCCCCcEEEeeCCCCcc--------cchhHhhccCCceecccccc
Q 043910 213 TQLP-----ENLGQLFSLEEFCLRKTKFEK--------IPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 213 ~~~~-----~~~~~l~~L~~L~l~~~~l~~--------l~~~l~~l~~L~~L~l~~~~ 257 (353)
+..+ ..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 5332 234556677777777776322 22233455566666666654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=132.57 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=101.9
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcc-cCccccCCCCC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEE-LPSSIECLSRL 178 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~l~~L 178 (353)
..+++|+.|+++++. ++. .+.+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .+..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~-i~~---l~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTD---LTGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSC-CSC---CTTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCC-ccC---hHHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 346677777777753 222 235667777788887776 333333 46677777777777777773 56667777777
Q ss_pred CEEeccCCCCCcccCccccCCCCCCEEEeeCcc-CCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 179 LHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG-ITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 179 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
++|++++|...+..+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 777777765444455566777777777777776 66665 4667777777777777777665 56677777777777753
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-18 Score=155.75 Aligned_cols=216 Identities=13% Similarity=0.084 Sum_probs=128.6
Q ss_pred EEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC------CCCCC-CceEEEccCCCccccCC-CCcC---
Q 043910 34 LKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS------ITHPA-KLVLLEVPHSNIQQLGD-GGQH--- 101 (353)
Q Consensus 34 L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~------~~~~~-~L~~L~L~~~~i~~l~~-~~~~--- 101 (353)
+.+++|.+++..++. +..+. |++|++++|.++..+. +..++ +|+.|++++|.+..... .+..
T Consensus 3 ~~ls~n~~~~~~~~~------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF------TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EECCCCTTCCHHHHH------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred cccccccchHHHHHH------HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 566777776644322 22234 8888888888776552 22455 78888888888776432 1222
Q ss_pred --CCCccEEecCCCcCcCCCCCCc----cccCC-ccCcEEeecCCCCCcccchhhh----c-CCCccEEEccCccCc---
Q 043910 102 --HCKLSQIITAARNFVTKTPNPS----FIRSL-NKLTILNLSGCSQLKRLPAEIL----S-AGNMEEMILNGTAIE--- 166 (353)
Q Consensus 102 --~~~L~~L~l~~~~~l~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~~~i~--- 166 (353)
+++|++|++++|. ++... .. .+..+ ++|++|++++|......+..+. . .++|++|++++|.++
T Consensus 77 ~~~~~L~~L~Ls~n~-l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 77 AIPANVTSLNLSGNF-LSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp TSCTTCCEEECCSSC-GGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred ccCCCccEEECcCCc-CChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 2778888888775 33221 11 23344 6788888888654333332322 2 357888888888777
Q ss_pred --ccCccccCCC-CCCEEeccCCCCCcccCc----cccCC-CCCCEEEeeCccCCc-----cCcccCC-CCCCcEEEeeC
Q 043910 167 --ELPSSIECLS-RLLHLGLRDCKRLKSLPK----GLCKL-KSLKFLILNGCGITQ-----LPENLGQ-LFSLEEFCLRK 232 (353)
Q Consensus 167 --~l~~~~~~l~-~L~~L~l~~~~~~~~l~~----~~~~l-~~L~~L~l~~~~i~~-----~~~~~~~-l~~L~~L~l~~ 232 (353)
.++..+..++ +|++|++++|......+. .+..+ ++|+.|++++|.++. ++..+.. .++|++|++++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 2334445554 788888887643222222 23344 478888888887764 4544444 34788888888
Q ss_pred CCCcccc-----hhHhhccCCceecccccc
Q 043910 233 TKFEKIP-----TNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 233 ~~l~~l~-----~~l~~l~~L~~L~l~~~~ 257 (353)
|.+...+ ..+..+++|+.|++++|.
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 8776332 223456777777777764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=130.08 Aligned_cols=177 Identities=20% Similarity=0.246 Sum_probs=124.2
Q ss_pred ceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+.++..++.++.+|... .++|+.|++++|.++.++.. +..+++|++|+++++. ++.++ ...+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLP-NGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccC-hhhcCCCCCcCEEECCCC
Confidence 34555566666666332 46788888888888776654 3567888888888763 33332 234677888888888886
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccCCccCc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGITQLPE 217 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~~ 217 (353)
...+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence 55433334467788888888888888877654 6778888999998854 445554 4778888999999888654
Q ss_pred ccCCCCCCcEEEeeCCCCc-ccchhHhhccC
Q 043910 218 NLGQLFSLEEFCLRKTKFE-KIPTNVIHLSR 247 (353)
Q Consensus 218 ~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~ 247 (353)
..++.|+.|++..|.+. .+|..++.++.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34567888888888877 77776665543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-18 Score=168.13 Aligned_cols=282 Identities=16% Similarity=0.145 Sum_probs=131.3
Q ss_pred hcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeeccc-CCCC--CCCCC-CCCCceEEEccCCCcccc-----C
Q 043910 26 TKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGY-PLKS--LPSIT-HPAKLVLLEVPHSNIQQL-----G 96 (353)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--l~~~~-~~~~L~~L~L~~~~i~~l-----~ 96 (353)
..+++|++|++++|.+++...... .. ....|++|++.+| .++. ++... .+++|++|++++|.+... .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l--~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELI--AK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHH--HH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHH--HH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 356667777777665543221111 00 1234667777666 2322 22222 466777777777665432 2
Q ss_pred CCCcCCCCccEEecCCCc-CcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc-------Ccc-
Q 043910 97 DGGQHHCKLSQIITAARN-FVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA-------IEE- 167 (353)
Q Consensus 97 ~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------i~~- 167 (353)
.....+++|+.|++++|. .++.......+..+++|++|++++|...+.++..+..+++|+.|.+.++. +..
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 222355677777777664 11100000012345677777777765444455555566666666644331 111
Q ss_pred -----------------------cCccccCCCCCCEEeccCCCCCcc--cCccccCCCCCCEEEeeCccCC--ccCcccC
Q 043910 168 -----------------------LPSSIECLSRLLHLGLRDCKRLKS--LPKGLCKLKSLKFLILNGCGIT--QLPENLG 220 (353)
Q Consensus 168 -----------------------l~~~~~~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~i~--~~~~~~~ 220 (353)
++..+..+++|++|++++|. ++. +...+..+++|+.|++.+| +. .++....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 22222234555555555544 221 1112334555555555554 22 1222122
Q ss_pred CCCCCcEEEeeC---------CCCc--ccchhHhhccCCceecccccccccc-----CCCCCCCcceeecC-----CCcC
Q 043910 221 QLFSLEEFCLRK---------TKFE--KIPTNVIHLSRLHSFCLSYCERLQS-----LPKLPCNLKELDAD-----HCAA 279 (353)
Q Consensus 221 ~l~~L~~L~l~~---------~~l~--~l~~~l~~l~~L~~L~l~~~~~l~~-----l~~~~~~L~~L~l~-----~c~~ 279 (353)
.+++|++|++.+ +.++ .+......+++|+.|.+.+ +.++. +...+++|+.|++. +|..
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 345555555522 2232 1111122355555554332 22221 11124567777776 5666
Q ss_pred ccccCcc----ccccccccccEEEecCCccCchHHHHhHHH
Q 043910 280 LESLSDL----FSISYDYYIRCFELSTNYKLDRNELRSILE 316 (353)
Q Consensus 280 l~~~~~~----~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~ 316 (353)
+++.+.. .....+++|+.|++++ .+.+.....+..
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~ 453 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT 453 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH
Confidence 6643321 1123456677777755 566555544433
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-17 Score=140.50 Aligned_cols=166 Identities=25% Similarity=0.242 Sum_probs=107.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+..++++++.++.++....+++|+.|++++|.++.++ .+..+++|+.|++++|. ++.. +.+..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~---~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDL---SPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCC---GGGTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCC---hhhccCCCCCEEECCCC
Confidence 6666777777776665556777777777777777665 45667777777777663 3322 23667777777777775
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. +.++. +.. ++|+.|++++|.++.++ .+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.+ ..+
T Consensus 96 ~l-~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 96 RL-KNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CC-SCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred cc-CCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 43 33443 222 67777777777777654 46667777777777643 44454 466677777777777777665 446
Q ss_pred CCCCCCcEEEeeCCCCcc
Q 043910 220 GQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~ 237 (353)
..+++|+.|++++|.+..
T Consensus 169 ~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEeCCCCcccC
Confidence 666777777777776553
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=138.45 Aligned_cols=170 Identities=17% Similarity=0.204 Sum_probs=110.1
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCcc
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLS 106 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~ 106 (353)
++++..+++.++.+++. . .+..+. |++|++++|.++.++.+..+++|+.|++++|.++.++. +..+++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-----~---~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-----V---SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-----E---CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred HHHHHHHHhcCCCcccc-----c---chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCC
Confidence 44555666666665431 1 112222 77777777777777766677777777777777777665 66677777
Q ss_pred EEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCC
Q 043910 107 QIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDC 186 (353)
Q Consensus 107 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~ 186 (353)
.|++++|. ++..+ .+.. ++|++|++++|.. +.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|
T Consensus 89 ~L~L~~N~-l~~l~---~~~~-~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 89 ELSVNRNR-LKNLN---GIPS-ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp EEECCSSC-CSCCT---TCCC-SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS
T ss_pred EEECCCCc-cCCcC---cccc-CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC
Confidence 77777763 33332 2333 7777777777543 3343 3667777777777777777765 5667777777777775
Q ss_pred CCCcccCccccCCCCCCEEEeeCccCCccC
Q 043910 187 KRLKSLPKGLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 187 ~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
. ++.+ ..+..+++|+.|++++|.+...|
T Consensus 161 ~-i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 161 E-ITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C-CCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred c-Ccch-HHhccCCCCCEEeCCCCcccCCc
Confidence 4 4444 44667777777777777766444
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=128.79 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=94.0
Q ss_pred EEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCc
Q 043910 84 LLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT 163 (353)
Q Consensus 84 ~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 163 (353)
.++++++.++.++..+ ...+++|+++++. ++.......+..+++|++|++++|...+..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 3444444444443322 2233445554432 222222234566677777777775544434445677777777777777
Q ss_pred cCcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCc
Q 043910 164 AIEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 164 ~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~ 236 (353)
.++.+++ .+..+++|++|++++|......|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7776654 366778888888887554444456677788888888888888766 566777888888888888875
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-18 Score=164.67 Aligned_cols=87 Identities=8% Similarity=0.077 Sum_probs=48.8
Q ss_pred HHHh-cCCCCcEEEeeeCC-CCCCccceeecCCCC-CCCccceEeecccCCCCC-----CCCC-CCCCceEEEccCCC--
Q 043910 23 DTFT-KMRKLRFLKFYNSS-INGENKCKVSNIQDP-VFPEIRYLFWHGYPLKSL-----PSIT-HPAKLVLLEVPHSN-- 91 (353)
Q Consensus 23 ~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l-----~~~~-~~~~L~~L~L~~~~-- 91 (353)
..+. .+++|++|++++|. ++... ..... ....|++|++++|.++.. +... .+++|+.|+++++.
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~-----l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 197 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDG-----LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHH-----HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSC
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHH-----HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCc
Confidence 3443 57888888888873 22110 11111 123488888888775432 2222 56788888888775
Q ss_pred cc--ccCCCCcCCCCccEEecCCCc
Q 043910 92 IQ--QLGDGGQHHCKLSQIITAARN 114 (353)
Q Consensus 92 i~--~l~~~~~~~~~L~~L~l~~~~ 114 (353)
+. .+......+++|+.|++++|.
T Consensus 198 ~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 198 VSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCcEEecCCCC
Confidence 21 111122346777777777763
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=138.51 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=127.7
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCc--CCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQ--HHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
-+.++.+++.++.+|... .+.++.|+|++|.++.++...+ .+++|+.|++++|. ++.++ ...+..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFIS-SEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccC-hhhccCCCCCCEEECC
Confidence 457888888888888543 4678999999999988776544 78899999998864 34333 2467788889999998
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCccc----cCCCCCCEEEeeCccC
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPKGL----CKLKSLKFLILNGCGI 212 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~----~~l~~L~~L~l~~~~i 212 (353)
+|......+..+..+++|+.|++++|.++.+ +..+..+++|++|++++| .++.+|..+ ..+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8765444444577888899999998888866 456788888888888884 466666533 5688888888888888
Q ss_pred CccCc-ccCCCCC--CcEEEeeCCCCc
Q 043910 213 TQLPE-NLGQLFS--LEEFCLRKTKFE 236 (353)
Q Consensus 213 ~~~~~-~~~~l~~--L~~L~l~~~~l~ 236 (353)
+.+|. .+..++. ++.|++++|++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 87763 3455554 477888888875
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=126.82 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=83.6
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCccccCCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPKGLCKLKSL 202 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L 202 (353)
.+..+++|++|++++|......|..+..+++|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 455667777777777655555566677788888888888888877664 4678888888888855444345567788888
Q ss_pred CEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 203 KFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 203 ~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
+.|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888888887664 4777888888888888875
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=137.20 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=83.2
Q ss_pred eEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCcccc-CCccCcEEeecCCCCCcccchhhhcCCCccEEEcc
Q 043910 83 VLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIR-SLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILN 161 (353)
Q Consensus 83 ~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 161 (353)
+.++++++.++.+|..+ ...++.|++++|. ++..+ ...+. .+++|++|++++|......+..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555555554432 2345555555542 22222 12233 55555556655543333333345555556666665
Q ss_pred CccCcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc----CCCCCCcEEEeeCCCCc
Q 043910 162 GTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL----GQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 162 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~----~~l~~L~~L~l~~~~l~ 236 (353)
+|.++.++. .+..+++|++|++++|......+..+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 555554443 3455555556665554322222344555555566666555555554432 34555555666555555
Q ss_pred ccch-hHhhccC--Cceeccccc
Q 043910 237 KIPT-NVIHLSR--LHSFCLSYC 256 (353)
Q Consensus 237 ~l~~-~l~~l~~--L~~L~l~~~ 256 (353)
.++. .+..++. ++.|++++|
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSS
T ss_pred ccCHHHhhhccHhhcceEEecCC
Confidence 4443 3444443 244555553
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-15 Score=124.46 Aligned_cols=111 Identities=25% Similarity=0.330 Sum_probs=63.3
Q ss_pred cccCCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCccccCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPKGLCKLKS 201 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 201 (353)
.+..+++|++|++++|.. +.++ ..+..+++|+.|++++|.++.++.. +..+++|++|++++| .++.+|..+..+++
T Consensus 59 ~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~ 136 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTH 136 (229)
T ss_dssp TTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTT
T ss_pred HhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCC
Confidence 344455555555555433 2333 2344555666666666666655443 455666666666653 34456655666666
Q ss_pred CCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 202 LKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 202 L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
|+.|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6666666666665553 3556667777777777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-18 Score=161.71 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=140.7
Q ss_pred CCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcC------------cCCCCCCccccCCccCcEEe-ecCCCCCc
Q 043910 77 THPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNF------------VTKTPNPSFIRSLNKLTILN-LSGCSQLK 143 (353)
Q Consensus 77 ~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~------------l~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 143 (353)
+..++|+.|+|++|+++.+|..+..+++|+.|+++++.. .... ....++.+++|+.|+ ++.+ ...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhc-ccc
Confidence 467899999999999999998889999999999865431 1111 123567778888887 4442 222
Q ss_pred ccch------hhh--cCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc
Q 043910 144 RLPA------EIL--SAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL 215 (353)
Q Consensus 144 ~~~~------~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~ 215 (353)
.++. .+. ....|+.|++++|.++.+|. ++.+++|++|++++| .++.+|..++.+++|+.|++++|.++.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCC
Confidence 2211 111 12368999999999999886 889999999999985 4668898899999999999999999998
Q ss_pred CcccCCCCCCcEEEeeCCCCccc--chhHhhccCCceeccccccccccCC
Q 043910 216 PENLGQLFSLEEFCLRKTKFEKI--PTNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~l~~l--~~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
| .++.+++|+.|++++|.+..+ |..++.+++|+.|++++|+ ++.+|
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 8 689999999999999999976 7889999999999999965 44444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=122.68 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=88.1
Q ss_pred ccCcEEeecCCCCC-cccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEe
Q 043910 129 NKLTILNLSGCSQL-KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLIL 207 (353)
Q Consensus 129 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 207 (353)
++|++|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 56777777775543 35665566677777777777777766 56667777777777775544445555556777777777
Q ss_pred eCccCCccC--cccCCCCCCcEEEeeCCCCcccch----hHhhccCCceecccccc
Q 043910 208 NGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIPT----NVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 208 ~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~~~~ 257 (353)
++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|++|++++|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 777777655 567777778888888877776654 56677778888777753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=122.59 Aligned_cols=150 Identities=23% Similarity=0.269 Sum_probs=123.0
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccC-CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLG-DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.+.++.+++.++.+|... .++|+.|++++|.++++. ..+..+++|+.|++++|. ++.++ ...+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCC
Confidence 667888888888888643 489999999999999874 456678999999999875 34443 34578899999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~ 213 (353)
|......+..+..+++|+.|++++|.++.+|..+..+++|++|++++| .++.++ ..+..+++|+.|++.+|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 765544445578899999999999999999999999999999999996 456666 46888999999999999876
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.8e-15 Score=123.23 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=120.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC--CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeec
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD--GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLS 137 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 137 (353)
-+.++++++.++.+|... .+.++.|++++|.++.++. .+..+++|+.|++++|. ++.++ ...+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECC
Confidence 457888888888888543 4567899999999988743 35678999999998875 44443 3468889999999999
Q ss_pred CCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC
Q 043910 138 GCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 138 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 213 (353)
+|...+..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+..|..+..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9776655566688899999999999999976 567889999999999996544444778889999999999999765
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=119.55 Aligned_cols=126 Identities=19% Similarity=0.144 Sum_probs=96.5
Q ss_pred CccCcEEeecCCCCC-cccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEE
Q 043910 128 LNKLTILNLSGCSQL-KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLI 206 (353)
Q Consensus 128 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 206 (353)
.++|++|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|...+.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 367888888887654 46776677788888888888888876 6677888888888888654444666666788888888
Q ss_pred eeCccCCccC--cccCCCCCCcEEEeeCCCCcccch----hHhhccCCceeccc
Q 043910 207 LNGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIPT----NVIHLSRLHSFCLS 254 (353)
Q Consensus 207 l~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~ 254 (353)
+++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888654 667888888888888888876654 57788888888875
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-14 Score=120.40 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=116.7
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
-+.++.+++.++.+|... .++|+.|++++|.++.++. .+..+++|+.|++++|. ++.+. ...+..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELA-PDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEEC-TTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcC-HHHhhCCcCCCEEECCC
Confidence 356777888888888543 3789999999999988775 55678999999999875 33332 35788899999999999
Q ss_pred CCCCcccch-hhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCC
Q 043910 139 CSQLKRLPA-EILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 139 ~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~ 213 (353)
|... .+|. .+..+++|+.|++++|.++.+ +..+..+++|++|++++|. ++.++ ..+..+++|+.|++++|.+.
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6554 5554 467899999999999999976 4568889999999999865 55554 46888999999999999764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=117.65 Aligned_cols=133 Identities=19% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCCceEEEccCCCcc--ccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCcc
Q 043910 79 PAKLVLLEVPHSNIQ--QLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNME 156 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 156 (353)
.++|+.|++++|.+. .++..+..+++|+.|++++|. ++.. ..+..+++|++|++++|...+.+|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 355666666666665 454444555566666665553 2222 3445555566666665544433444444455555
Q ss_pred EEEccCccCcccC--ccccCCCCCCEEeccCCCCCcccCc----cccCCCCCCEEEeeCccCCccC
Q 043910 157 EMILNGTAIEELP--SSIECLSRLLHLGLRDCKRLKSLPK----GLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 157 ~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
.|++++|.++.++ ..+..+++|++|++++|. +..+|. .+..+++|++|++++|.+..+|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 5555555555443 344445555555555432 233332 3444455555555544444433
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=147.67 Aligned_cols=150 Identities=24% Similarity=0.274 Sum_probs=113.0
Q ss_pred ccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCC
Q 043910 123 SFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSL 202 (353)
Q Consensus 123 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L 202 (353)
..+..++.|++|+|++|.. ..+|..+..+++|++|+|++|.++.+|..+..+++|++|+|++|. ++.+|..++.+++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence 4677889999999999654 478877889999999999999999999999999999999999965 66889889999999
Q ss_pred CEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-ccchhHhhcc-CCceeccccccccccCCCCCCCcceeecCCC
Q 043910 203 KFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLS-RLHSFCLSYCERLQSLPKLPCNLKELDADHC 277 (353)
Q Consensus 203 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 277 (353)
++|++++|.++.+|..++.+++|+.|++++|.+. .+|..+..+. .+..+++++|.....+|. .|+.|+++++
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l~~n 369 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEINTD 369 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---------
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEeecc
Confidence 9999999999999988999999999999999998 5555554432 123466777655544443 4555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-17 Score=159.00 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=144.9
Q ss_pred CccceEeecccCCCCCC-CCCCCCCceEEEccCCC-------------cc-ccCCCCcCCCCccEEecCCCcCcCCCCCC
Q 043910 58 PEIRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSN-------------IQ-QLGDGGQHHCKLSQIITAARNFVTKTPNP 122 (353)
Q Consensus 58 ~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~-------------i~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 122 (353)
..|+.|++++|.++.+| .+..+++|+.|++++|. .. ..+..+..+++|+.|+...++.++.....
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 34889999999988888 45578899999987653 11 12234456777777773222221111000
Q ss_pred ----ccccC--CccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccc
Q 043910 123 ----SFIRS--LNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGL 196 (353)
Q Consensus 123 ----~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 196 (353)
..+.. ...|++|++++|. ++.+|. ++.+++|+.|++++|.++.+|..++.+++|++|++++| .++.+| .+
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l 504 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GV 504 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GG
T ss_pred hhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-cc
Confidence 00111 1258999999964 455786 99999999999999999999999999999999999995 466688 79
Q ss_pred cCCCCCCEEEeeCccCCcc--CcccCCCCCCcEEEeeCCCCcccchh----HhhccCCceecc
Q 043910 197 CKLKSLKFLILNGCGITQL--PENLGQLFSLEEFCLRKTKFEKIPTN----VIHLSRLHSFCL 253 (353)
Q Consensus 197 ~~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l 253 (353)
+.+++|+.|++++|.++.+ |..++.+++|+.|++++|.+..+|+. +..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999987 88899999999999999999866542 345788888753
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=114.99 Aligned_cols=130 Identities=16% Similarity=0.225 Sum_probs=92.6
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCC-CccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCcc-ccCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAG-NMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG-LCKLKS 201 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~ 201 (353)
.+..+.+|++|++++|.. ..++. +..+. +|+.|++++|.++.+ ..+..+++|++|++++|. ++.+|.. +..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCC
Confidence 455666777777777543 34443 44443 788888888877776 567777888888888754 5555543 367788
Q ss_pred CCEEEeeCccCCccCc--ccCCCCCCcEEEeeCCCCcccchh----HhhccCCceecccccc
Q 043910 202 LKFLILNGCGITQLPE--NLGQLFSLEEFCLRKTKFEKIPTN----VIHLSRLHSFCLSYCE 257 (353)
Q Consensus 202 L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l~~~~ 257 (353)
|++|++++|.++.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8888888888877765 677778888888888888776664 7788888888887764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-15 Score=145.90 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=79.1
Q ss_pred CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccE
Q 043910 78 HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157 (353)
Q Consensus 78 ~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 157 (353)
.++.|+.|+|++|.+..++..++.+++|+.|++++|. ++.+ +..+..+++|++|+|++|... .+|..++.+++|++
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~l--p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTEL--PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCC--CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Cccc--ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 5677777777777777777666677777777777764 3323 245677777777777775543 66777777777777
Q ss_pred EEccCccCcccCccccCCCCCCEEeccCCCCCcccCcc
Q 043910 158 MILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKG 195 (353)
Q Consensus 158 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~ 195 (353)
|+|++|.++.+|..++.+++|++|++++|.....+|..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 77777777777777777777777777776544444433
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=110.90 Aligned_cols=86 Identities=23% Similarity=0.274 Sum_probs=38.5
Q ss_pred cCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEE
Q 043910 151 SAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEF 228 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L 228 (353)
.+++|++|++++|.++.+ |..+..+++|++|++++|......+..+..+++|++|++++|.++.+ |..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 333444444444444432 23344444444444444322222222344455555555555555533 3445555556666
Q ss_pred EeeCCCCc
Q 043910 229 CLRKTKFE 236 (353)
Q Consensus 229 ~l~~~~l~ 236 (353)
++++|++.
T Consensus 132 ~L~~N~l~ 139 (192)
T 1w8a_A 132 NLASNPFN 139 (192)
T ss_dssp ECTTCCBC
T ss_pred EeCCCCcc
Confidence 66666554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-14 Score=109.98 Aligned_cols=123 Identities=23% Similarity=0.245 Sum_probs=65.8
Q ss_pred CCceEEEccCCCcc--ccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccE
Q 043910 80 AKLVLLEVPHSNIQ--QLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157 (353)
Q Consensus 80 ~~L~~L~L~~~~i~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 157 (353)
++|+.|++++|.++ .++..+..+++|+.|++++|. ++.. ..+..+++|++|++++|...+.+|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 45566666666655 444444555666666666552 2222 34555666666666665444445554555666666
Q ss_pred EEccCccCcccC--ccccCCCCCCEEeccCCCCCcccCc----cccCCCCCCEEEe
Q 043910 158 MILNGTAIEELP--SSIECLSRLLHLGLRDCKRLKSLPK----GLCKLKSLKFLIL 207 (353)
Q Consensus 158 L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l 207 (353)
|++++|.++.++ ..+..+++|++|++++|. ++..+. .+..+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 666666665443 445555566666665543 333332 3445555555544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=111.71 Aligned_cols=124 Identities=22% Similarity=0.299 Sum_probs=102.4
Q ss_pred cEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc--ccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeC
Q 043910 132 TILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS--IECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNG 209 (353)
Q Consensus 132 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~--~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 209 (353)
++++++++ .++.+|..+. .++++|++++|.++.++.. +..+++|++|++++|...+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888884 4567776543 3899999999999988763 88999999999999765554577889999999999999
Q ss_pred ccCCccCc-ccCCCCCCcEEEeeCCCCccc-chhHhhccCCceeccccccc
Q 043910 210 CGITQLPE-NLGQLFSLEEFCLRKTKFEKI-PTNVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 210 ~~i~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~ 258 (353)
|.++.++. .+..+++|++|++++|.+..+ |..+..+++|++|++++|+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 99997654 478899999999999999854 66788899999999998754
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=110.47 Aligned_cols=124 Identities=23% Similarity=0.365 Sum_probs=80.7
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEecc
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLR 184 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~ 184 (353)
+.++++++. ++.++. . -.++|++|++++|. +..+|..+..+++|+.|++++|.++.++. .+..+++|++|+++
T Consensus 13 ~~l~~~~~~-l~~ip~--~--~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPK--G--IPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSC-CSSCCS--C--CCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC-CCcCCC--C--CCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 456665542 333331 1 12567777777753 44666667777777777777777776653 46777777777777
Q ss_pred CCCCCcccC-ccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 185 DCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 185 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
+|. ++.++ ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++.
T Consensus 87 ~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 754 44443 456777777777777777776665 3666777777777777764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-14 Score=113.45 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=43.8
Q ss_pred hhcCCCccEEEccCccCcccCccc-cCCCCCCEEeccCCCCCcccCc--cccCCCCCCEEEeeCccCCccCcc----cCC
Q 043910 149 ILSAGNMEEMILNGTAIEELPSSI-ECLSRLLHLGLRDCKRLKSLPK--GLCKLKSLKFLILNGCGITQLPEN----LGQ 221 (353)
Q Consensus 149 ~~~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~i~~~~~~----~~~ 221 (353)
+..+++|++|++++|.++.+|+.+ ..+++|++|++++|. ++.+|. .+..+++|+.|++++|.+..+|.. +..
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~ 138 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 138 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence 344444555555555555444332 445555555555532 344443 444555555555555555555442 455
Q ss_pred CCCCcEEEeeCCCCc
Q 043910 222 LFSLEEFCLRKTKFE 236 (353)
Q Consensus 222 l~~L~~L~l~~~~l~ 236 (353)
+++|+.|++++|...
T Consensus 139 l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 139 VPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCSEETTEECCHH
T ss_pred CCccceeCCCcCCHH
Confidence 556666666655543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-13 Score=118.28 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=56.6
Q ss_pred CCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCC-EEEeeCccCCccC-cccCCCCCCcE
Q 043910 152 AGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLK-FLILNGCGITQLP-ENLGQLFSLEE 227 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~-~L~l~~~~i~~~~-~~~~~l~~L~~ 227 (353)
+++|+.+++++|.++.++. +|..+++|+.+++.++ +..++. .|..+++|+ .+++.. .++.++ ..+.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 5566666666666665554 3556666666666653 444443 456666666 666655 455443 34556666666
Q ss_pred EEeeCCCCcccch-hHhhccCCceec
Q 043910 228 FCLRKTKFEKIPT-NVIHLSRLHSFC 252 (353)
Q Consensus 228 L~l~~~~l~~l~~-~l~~l~~L~~L~ 252 (353)
+++++|.+..++. .+.++++|+.++
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 6666666665544 445555555543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-12 Score=103.68 Aligned_cols=123 Identities=17% Similarity=0.237 Sum_probs=63.8
Q ss_pred eEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCC
Q 043910 62 YLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQ 141 (353)
Q Consensus 62 ~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 141 (353)
.++++++.++.+|... .++|+.|++++|.++.++. .+..+++|++|++++|..
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~--------------------------~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK--------------------------ELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG--------------------------GGGGCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH--------------------------HhhcccCCCEEECCCCcC
Confidence 4455555555555322 2455555555555544443 344445555555555433
Q ss_pred CcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccC
Q 043910 142 LKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGI 212 (353)
Q Consensus 142 ~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i 212 (353)
.+..+..+..+++|++|++++|.++.+++ .+..+++|++|++++|. ++.+|. .+..+++|+.|++++|.+
T Consensus 67 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 67 STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 33333345555556666666665555443 35556666666666533 344443 355666666666666654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-15 Score=121.36 Aligned_cols=107 Identities=22% Similarity=0.285 Sum_probs=46.9
Q ss_pred ccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
+..+++|++|++++|.. ..+| .+..+++|+.|++++|.++.+|..+..+++|++|++++| .++.+| .+..+++|+.
T Consensus 44 ~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 44444445555444322 2233 344444444444444444444444444444444444443 222233 2344444444
Q ss_pred EEeeCccCCccCc--ccCCCCCCcEEEeeCCCC
Q 043910 205 LILNGCGITQLPE--NLGQLFSLEEFCLRKTKF 235 (353)
Q Consensus 205 L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~l 235 (353)
|++++|.++.++. .+..+++|++|++++|.+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 4444444443322 344444444444444444
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-11 Score=97.93 Aligned_cols=107 Identities=25% Similarity=0.350 Sum_probs=66.1
Q ss_pred ccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEE
Q 043910 129 NKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLI 206 (353)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~ 206 (353)
++|++|++++|...+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 4556666666443322223345566666666666666655543 4566777777777643 444443 456677777777
Q ss_pred eeCccCCccCcc-cCCCCCCcEEEeeCCCCc
Q 043910 207 LNGCGITQLPEN-LGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 207 l~~~~i~~~~~~-~~~l~~L~~L~l~~~~l~ 236 (353)
+++|.++.+|.. +..+++|++|++++|++.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 777777766654 356777777787777765
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-11 Score=107.51 Aligned_cols=215 Identities=8% Similarity=0.072 Sum_probs=93.9
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC--CCCCCCCceEEEccCCCccccCCCC
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQLGDGG 99 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~l~~~~ 99 (353)
..+|.++ +|+.+.+.++ +. .....+|....|+.+.+.. .++.++ .+..+++|+.+++++|.++.++...
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~------~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LK------SIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CC------EECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred HhhcccC-CccEEEeCCC-cc------EECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 4455554 4666655543 11 1112233332355555543 344343 2224556666666655555555555
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch-hhhcCCCccEEEccCccCcccC-ccccCCCC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA-EILSAGNMEEMILNGTAIEELP-SSIECLSR 177 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~ 177 (353)
+.+.+|+.+.+..+ ++.+. ..+|..+++|+.+.+..+ +..++. .|.. .+|+.+.+. +.++.++ .+|..+++
T Consensus 200 F~~~~L~~l~lp~~--l~~I~-~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIG-SQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTCCCSEEECCTT--CCEEC-TTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTT
T ss_pred EeecccCEEEeCCc--hheeh-hhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCC
Confidence 55555665555432 33332 234555555665555541 222222 2223 455555552 2334332 24445555
Q ss_pred CCEEeccCCCCC----cccC-ccccCCCCCCEEEeeCccCCccC-cccCCCCCCcEEEeeCCCCcccch-hHhhccCCce
Q 043910 178 LLHLGLRDCKRL----KSLP-KGLCKLKSLKFLILNGCGITQLP-ENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHS 250 (353)
Q Consensus 178 L~~L~l~~~~~~----~~l~-~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~ 250 (353)
|+.+++.++... ..++ ..|..|++|+.+.+.. .++.++ ..+..|.+|+.+.+..+ +..+.. .+.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 555555442211 0122 2344555555555542 233332 23444445555555322 333322 23334 4444
Q ss_pred ecccc
Q 043910 251 FCLSY 255 (353)
Q Consensus 251 L~l~~ 255 (353)
+++.+
T Consensus 350 l~l~~ 354 (401)
T 4fdw_A 350 VKVEG 354 (401)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 44444
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=97.53 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=53.3
Q ss_pred ccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCC
Q 043910 125 IRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSL 202 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L 202 (353)
+..+++|++|++++|...+..+..+..+++|+.|++++|.++.++.. +..+++|++|++++| .++.+|. .+..+++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCccc
Confidence 45556666666666443322223345666777777777766655543 466777777777764 3445554 34667777
Q ss_pred CEEEeeCccCC
Q 043910 203 KFLILNGCGIT 213 (353)
Q Consensus 203 ~~L~l~~~~i~ 213 (353)
+.|++++|.+.
T Consensus 127 ~~L~l~~N~~~ 137 (177)
T 2o6r_A 127 QKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEecCCCee
Confidence 77777777655
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-14 Score=117.00 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=90.6
Q ss_pred cccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCC
Q 043910 143 KRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQL 222 (353)
Q Consensus 143 ~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l 222 (353)
+.+|..+..+++|++|++++|.++.+| .+..+++|++|++++| .++.+|..+..+++|+.|++++|.++.+| .+..+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 344457788888899999888888887 7788888899988885 45577776667788888999888888776 47778
Q ss_pred CCCcEEEeeCCCCcccch--hHhhccCCceeccccccccc
Q 043910 223 FSLEEFCLRKTKFEKIPT--NVIHLSRLHSFCLSYCERLQ 260 (353)
Q Consensus 223 ~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~l~ 260 (353)
++|+.|++++|.+..++. .+..+++|+.|++++|....
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 888899998888886654 67788888888888875433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-12 Score=111.11 Aligned_cols=258 Identities=12% Similarity=0.044 Sum_probs=146.9
Q ss_pred CCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCC-CCCCCCCceEEEccCCCccccCCCCcC-----
Q 043910 28 MRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLP-SITHPAKLVLLEVPHSNIQQLGDGGQH----- 101 (353)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~L~~~~i~~l~~~~~~----- 101 (353)
+.++++|.+.++-- .. +....... ...|+.|+|++|++.... .....+.+..+.+..+.|.. ..+..
T Consensus 24 ~~~l~~L~l~g~i~-~~--~~~~l~~~--l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLN-AE--DFRHLRDE--FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA--YAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEEC-HH--HHHHHHHS--CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT--TTTEEEETTE
T ss_pred hCceeEEEEecccc-HH--HHHHHHHh--hccCeEEecCcceeEEecCccccccccccccccccccCH--HHhccccccc
Confidence 55788888887411 00 00011111 233888888888876221 11122224445555443321 23344
Q ss_pred ---CCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccC----cccC-cccc
Q 043910 102 ---HCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAI----EELP-SSIE 173 (353)
Q Consensus 102 ---~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i----~~l~-~~~~ 173 (353)
+.+|+.+++.+ .++.++ ..+|..|++|+.+++.++.....-+..|..+.++..+....... ..+. ..+.
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I~-~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNIE-DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEEC-TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccCCCcEEECCc--cccchh-HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 78888888877 455554 35788888888888888654444444566666666666554211 1111 1233
Q ss_pred CCCCCC-EEeccCCCCCcc-------------------------cCccccCCCCCCEEEeeCccCCccCc-ccCCCCCCc
Q 043910 174 CLSRLL-HLGLRDCKRLKS-------------------------LPKGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLE 226 (353)
Q Consensus 174 ~l~~L~-~L~l~~~~~~~~-------------------------l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~ 226 (353)
.+..|+ .+.+.....+.. .......+++|+.+++.+|.++.++. .+..+.+|+
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 333443 222221111000 00000137888888888888887765 477888888
Q ss_pred EEEeeCCCCcccch-hHhhccCCc-eeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEe
Q 043910 227 EFCLRKTKFEKIPT-NVIHLSRLH-SFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFEL 300 (353)
Q Consensus 227 ~L~l~~~~l~~l~~-~l~~l~~L~-~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~ 300 (353)
++++.+| +..++. .+.+|++|+ .+++.+ .++.++. .+++|+.+++.+. .++.++...+. .|++|+.++.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFG-NGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTC-TTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhc-CCcchhhhcc
Confidence 8888887 666655 567888888 888876 4556553 4577888887653 57777765543 4666776653
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=96.49 Aligned_cols=106 Identities=25% Similarity=0.373 Sum_probs=84.2
Q ss_pred CcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEee
Q 043910 131 LTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILN 208 (353)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~ 208 (353)
-+.++++++ .++.+|..+ .++|+.|++++|.++.+ |..+..+++|++|++++| .++.+|. .+..+++|+.|+++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 367888884 557777655 37899999999999977 456788999999999985 5666765 46789999999999
Q ss_pred CccCCccCcc-cCCCCCCcEEEeeCCCCcccch
Q 043910 209 GCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPT 240 (353)
Q Consensus 209 ~~~i~~~~~~-~~~l~~L~~L~l~~~~l~~l~~ 240 (353)
+|.++.+|.. +..+++|+.|++++|++...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9999888765 7888999999999998874443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.1e-11 Score=95.36 Aligned_cols=84 Identities=25% Similarity=0.347 Sum_probs=41.3
Q ss_pred ccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEE
Q 043910 129 NKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLI 206 (353)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~ 206 (353)
++|++|++++|...+..|..+..+++|+.|++++|.++.+|.. +..+++|++|++++| .++.+|. .+..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 4555555555443333344445555555555555555555443 344555555555553 2333333 244555555555
Q ss_pred eeCccCC
Q 043910 207 LNGCGIT 213 (353)
Q Consensus 207 l~~~~i~ 213 (353)
+++|.+.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 5555444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.20 E-value=6.3e-11 Score=95.27 Aligned_cols=103 Identities=27% Similarity=0.399 Sum_probs=84.2
Q ss_pred cCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEEe
Q 043910 130 KLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLIL 207 (353)
Q Consensus 130 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l 207 (353)
..++++++++ .+..+|..+ .++++.|++++|.++.+ |..+..+++|++|++++|. ++.+|. .+..+++|++|++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 4578899984 556677655 47899999999999977 4568889999999999854 566664 5688999999999
Q ss_pred eCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 208 NGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 208 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
++|.++.++. .+..+++|+.|++++|++.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9999998876 4788999999999999876
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=93.86 Aligned_cols=84 Identities=25% Similarity=0.331 Sum_probs=43.2
Q ss_pred ccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cccCCCCCCEEE
Q 043910 129 NKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGLRDCKRLKSLPK-GLCKLKSLKFLI 206 (353)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~ 206 (353)
++|++|++++|...+..|..+..+++|++|++++|.++.+|+. +..+++|++|++++| .++.++. .+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 4555555555443333344455555555555555555555443 345555555555553 2333332 355555555555
Q ss_pred eeCccCC
Q 043910 207 LNGCGIT 213 (353)
Q Consensus 207 l~~~~i~ 213 (353)
+++|.+.
T Consensus 109 L~~N~~~ 115 (170)
T 3g39_A 109 LLNNPWD 115 (170)
T ss_dssp CCSSCBC
T ss_pred eCCCCCC
Confidence 5555443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.15 E-value=8.9e-09 Score=94.23 Aligned_cols=183 Identities=11% Similarity=0.132 Sum_probs=83.5
Q ss_pred CceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-hhhhcCCCccEE
Q 043910 81 KLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-AEILSAGNMEEM 158 (353)
Q Consensus 81 ~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L 158 (353)
+|+.+.+.. .++.+.. .+..|.+|+.+++.++ .++.++ ..+|. +.+|+.+.+.. + +..++ ..|..+++|+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~-~~aF~-~~~L~~l~lp~-~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLP-ASTFV-YAGIEEVLLPV-T-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEEC-TTTTT-TCCCSEEECCT-T-CCEECTTTTTTCTTCCCE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEec-hhhEe-ecccCEEEeCC-c-hheehhhHhhCCCCCCEE
Confidence 455555553 4444433 2333555555555543 222222 12232 35555555543 1 22222 234455555555
Q ss_pred EccCccCcccCc-cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCC-----ccC-cccCCCCCCcEEEe
Q 043910 159 ILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGIT-----QLP-ENLGQLFSLEEFCL 230 (353)
Q Consensus 159 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~-----~~~-~~~~~l~~L~~L~l 230 (353)
.+..+ ++.++. +|.. .+|+.+.+.. .+..++ ..|..|++|+.+.+.++.+. .++ ..+..|++|+.+++
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 55543 333332 2222 4555555532 233333 24555666666666555433 222 24555556666665
Q ss_pred eCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecCCC
Q 043910 231 RKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHC 277 (353)
Q Consensus 231 ~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c 277 (353)
.+ .+..+.. .+.+|++|+.+.+..+ ++.+.. .+ +|+.+++.+.
T Consensus 308 ~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 308 PE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 52 3444433 3445556666655432 333332 22 5555555553
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-09 Score=96.31 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=64.4
Q ss_pred EeecCCCCCcccchhhhcCCCccEEEccC-ccCcccCc-cccCCCCCCEEeccCCCCCccc-CccccCCCCCCEEEeeCc
Q 043910 134 LNLSGCSQLKRLPAEILSAGNMEEMILNG-TAIEELPS-SIECLSRLLHLGLRDCKRLKSL-PKGLCKLKSLKFLILNGC 210 (353)
Q Consensus 134 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~ 210 (353)
++.++++.+..+|. +..+++|+.|+|++ |.++.+++ .+..+++|++|+|++|. ++.+ |..|..+++|+.|++++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 45555324555666 66666777777775 67776653 56677777777777754 4433 345667777777777777
Q ss_pred cCCccCcccCCCCCCcEEEeeCCCCc
Q 043910 211 GITQLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 211 ~i~~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
.++.+|........|+.|++++|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 77766654433334777777777765
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-11 Score=109.81 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCceEEEccCCCccccC-----CCCc-CCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh----
Q 043910 80 AKLVLLEVPHSNIQQLG-----DGGQ-HHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI---- 149 (353)
Q Consensus 80 ~~L~~L~L~~~~i~~l~-----~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 149 (353)
+.|+.|++++|.++... ..+. ..++|+.|++++|.. +..........+++|++|++++|.....-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45666666666664321 1111 124566666665531 110000011233455666666654322211111
Q ss_pred -hcCCCccEEEccCccCcc-----cCccccCCCCCCEEeccCCCCCcc-----cCccccCCCCCCEEEeeCccCCc----
Q 043910 150 -LSAGNMEEMILNGTAIEE-----LPSSIECLSRLLHLGLRDCKRLKS-----LPKGLCKLKSLKFLILNGCGITQ---- 214 (353)
Q Consensus 150 -~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~~---- 214 (353)
...++|++|++++|.++. ++..+..+++|++|++++|. ++. ++..+..+++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 123455666666655542 22333445555555555543 221 12233344455555555555541
Q ss_pred -cCcccCCCCCCcEEEeeCCCCc
Q 043910 215 -LPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 215 -~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
++..+...++|++|++++|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 2222333445555555555544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-10 Score=104.26 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=97.1
Q ss_pred CCCccEEecCCCcCcCCCCCCccc----c-CCccCcEEeecCCCCCcccchhh-hcCCCccEEEccCccCccc-----Cc
Q 043910 102 HCKLSQIITAARNFVTKTPNPSFI----R-SLNKLTILNLSGCSQLKRLPAEI-LSAGNMEEMILNGTAIEEL-----PS 170 (353)
Q Consensus 102 ~~~L~~L~l~~~~~l~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~l-----~~ 170 (353)
.+.++.|++++|.. +... ...+ . ..++|++|++++|.........+ ..+.+|+.|++++|.++.. ..
T Consensus 71 ~~~L~~L~Ls~n~l-~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRM-TPVK-CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCC-CHHH-HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCC-CHHH-HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 46788888888752 2110 1111 1 23688888888876543322222 2356788888888888632 11
Q ss_pred cc-cCCCCCCEEeccCCCCCcc-----cCccccCCCCCCEEEeeCccCCc-----cCcccCCCCCCcEEEeeCCCCcc--
Q 043910 171 SI-ECLSRLLHLGLRDCKRLKS-----LPKGLCKLKSLKFLILNGCGITQ-----LPENLGQLFSLEEFCLRKTKFEK-- 237 (353)
Q Consensus 171 ~~-~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~l~~-- 237 (353)
.+ ...++|++|++++|. ++. ++..+..+++|++|++++|.++. ++..+...++|++|++++|.++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 22 245778888888865 332 33345677888888888888762 34456666788888888888762
Q ss_pred ---cchhHhhccCCceecccccc
Q 043910 238 ---IPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 238 ---l~~~l~~l~~L~~L~l~~~~ 257 (353)
++..+...++|++|++++|.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHhCCCCCEEeccCCC
Confidence 33445567788888888864
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.6e-09 Score=92.22 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=61.8
Q ss_pred eEeeccc-CCCCCCCCCCCCCceEEEccC-CCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 62 YLFWHGY-PLKSLPSITHPAKLVLLEVPH-SNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 62 ~L~l~~~-~~~~l~~~~~~~~L~~L~L~~-~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
.++.+++ .++.+|.+..+++|+.|+|++ |.++.++. .+..+++|+.|++++|. ++.++ ...|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVA-PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEEC-TTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeC-HHHhcCCcCCCEEeCCC
Confidence 3455665 677777744666777777774 77777663 35567777777777663 44333 33566777777777777
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCc
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIE 166 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 166 (353)
|... .+|........|+.|++.+|.+.
T Consensus 90 N~l~-~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred Cccc-eeCHHHcccCCceEEEeeCCCcc
Confidence 5433 44433322223777777777665
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.1e-07 Score=80.76 Aligned_cols=262 Identities=15% Similarity=0.096 Sum_probs=127.8
Q ss_pred ccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCC-ccceEeeccc------------C---------CCCCC
Q 043910 17 EIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFP-EIRYLFWHGY------------P---------LKSLP 74 (353)
Q Consensus 17 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~------------~---------~~~l~ 74 (353)
...+...+|.+|++|+.+++.++ ++. + ....+... .|+.+.+... . ...+.
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~-l~~-----I-~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~ 154 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS-VKM-----I-GRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIG 154 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCE-----E-CTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEEC
T ss_pred ccCcchhHhhCCCCCcEEEeCCC-ceE-----c-cchhhcccccchhhcccCceeeecceeeecccccccccCccccccc
Confidence 34566789999999999999754 210 1 11122111 1333332211 0 01111
Q ss_pred --CCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhc
Q 043910 75 --SITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILS 151 (353)
Q Consensus 75 --~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 151 (353)
.+..+++|+.+.+..+ +..+.. .+..+.+|+.+.+..+ ++.+. ..++..+..|+.+.+..+ ...+......
T Consensus 155 ~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~-~~~F~~~~~L~~i~~~~~--~~~i~~~~~~ 228 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIR-DYCFAECILLENMEFPNS--LYYLGDFALS 228 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEEC-TTTTTTCTTCCBCCCCTT--CCEECTTTTT
T ss_pred hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeC-chhhccccccceeecCCC--ceEeehhhcc
Confidence 1224566666666543 233332 2334566666666543 22222 234555666666555432 1122222333
Q ss_pred CCCccEEEccCccCcccC-ccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEe
Q 043910 152 AGNMEEMILNGTAIEELP-SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCL 230 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l 230 (353)
..+|+.+.+... ++.+. ..+..+.+++.+.+..+ ...--...+..+..++.+......+. ...+..+.+|+.+.+
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKL 304 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEE
T ss_pred cCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec--ccccccccccccccc
Confidence 445666555433 22222 23455666666666542 12212234555666666655443322 123455667777777
Q ss_pred eCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEec
Q 043910 231 RKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELS 301 (353)
Q Consensus 231 ~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~ 301 (353)
..+ +..+.. .+.+|++|+.+++.. .++.++. .+.+|+.+.+.. .++.++...+. .|.+|+.+++.
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~lp 374 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQ-GCINLKKVELP 374 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBT-TCTTCCEEEEE
T ss_pred ccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhh-CCCCCCEEEEC
Confidence 543 444433 455677777777753 2444443 345666666654 25555544432 45566666553
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.5e-07 Score=81.74 Aligned_cols=264 Identities=10% Similarity=0.050 Sum_probs=132.8
Q ss_pred cccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC-CccceEeecccCCCCCC--CCCCCCCceEEEccCCCc
Q 043910 16 EEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-PEIRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNI 92 (353)
Q Consensus 16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i 92 (353)
.+.++...+|.+|++|+.+.+..+ ++ .....+|.. ..|+.+.+..+ ++.++ .+..+..|+.+.+..+ +
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L 128 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e
Confidence 345677889999999999999753 32 122344544 34888888643 55454 2335677777666543 4
Q ss_pred cccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccC-cc
Q 043910 93 QQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELP-SS 171 (353)
Q Consensus 93 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~ 171 (353)
..+....+....+....+... .+.+. ..+|..+.+|+.+.+.++ ....-...|..+.+|+.+.+..+ ++.+. .+
T Consensus 129 ~~i~~~aF~~~~~~~~~~~~~--~~~i~-~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~ 203 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIPEG--VTVIG-DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYC 203 (394)
T ss_dssp CEECTTTTTTCCCSEEECCTT--CCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTT
T ss_pred eeecceeeecccccccccCcc--ccccc-hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchh
Confidence 333333333233333332221 11121 235667777777777542 22222234556666776666554 33222 23
Q ss_pred ccCCCCCCEEeccCCC--------------------CCcccC-ccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEe
Q 043910 172 IECLSRLLHLGLRDCK--------------------RLKSLP-KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCL 230 (353)
Q Consensus 172 ~~~l~~L~~L~l~~~~--------------------~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l 230 (353)
+..+..|+.+.+..+. ....+. ..+..+..|+.+.+..+...--...+..+..++.+..
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred hccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 3444444444443211 112222 1344555566555554432222233455556666555
Q ss_pred eCCCCcccchhHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccccccccccccEEEe
Q 043910 231 RKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLFSISYDYYIRCFEL 300 (353)
Q Consensus 231 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~ 300 (353)
..+.+. ...+..+.+|+.+.+.. .++.++. .+.+|+.+++.. .++.++...+. .|.+|+.+.+
T Consensus 284 ~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-~c~~L~~i~l 350 (394)
T 4fs7_A 284 GSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR-GCTSLSNINF 350 (394)
T ss_dssp CSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-TCTTCCEECC
T ss_pred Cceeec--ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhcc-CCCCCCEEEE
Confidence 443221 11345677788777754 2444443 346777777753 35555544332 3555555444
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=90.84 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=69.2
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc-ccCccc--cCCCCCCEEeccCC--C-----CCcccC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE-ELPSSI--ECLSRLLHLGLRDC--K-----RLKSLP 193 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~--~~l~~L~~L~l~~~--~-----~~~~l~ 193 (353)
.+..+++|+.|++++|... .++. + .+++|+.|++..+.+. .....+ ..+++|++|+++.+ . .+..+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3455677777777765222 2222 2 2567777777766655 111222 25677777776421 1 111111
Q ss_pred ccc--cCCCCCCEEEeeCccCCc-cCcc---cCCCCCCcEEEeeCCCCcc-----cchhHhhccCCceeccccc
Q 043910 194 KGL--CKLKSLKFLILNGCGITQ-LPEN---LGQLFSLEEFCLRKTKFEK-----IPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 194 ~~~--~~l~~L~~L~l~~~~i~~-~~~~---~~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~ 256 (353)
..+ ..+++|++|++.+|.+.. .+.. ...+++|++|+++.|.+.. ++..+.++++|+.|++++|
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 112 246777777777776651 1111 1245677777777777652 2333345667777777665
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-08 Score=91.83 Aligned_cols=151 Identities=13% Similarity=0.146 Sum_probs=93.8
Q ss_pred cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhh--cCCCccEEEccCc--c------CcccC
Q 043910 100 QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEIL--SAGNMEEMILNGT--A------IEELP 169 (353)
Q Consensus 100 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~------i~~l~ 169 (353)
..+|+|+.|.+.++..+. . +.+ .+++|++|++..|.........+. .+++|+.|+|+.+ . +..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l---~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-I---GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-C---CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred hcCCCCcEEEEeCCCCce-e---ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456788888887763222 1 223 367888888887654433333343 5788888887531 1 22222
Q ss_pred ccc--cCCCCCCEEeccCCCCCcccCcc---ccCCCCCCEEEeeCccCCc-----cCcccCCCCCCcEEEeeCCCCc-cc
Q 043910 170 SSI--ECLSRLLHLGLRDCKRLKSLPKG---LCKLKSLKFLILNGCGITQ-----LPENLGQLFSLEEFCLRKTKFE-KI 238 (353)
Q Consensus 170 ~~~--~~l~~L~~L~l~~~~~~~~l~~~---~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~l~-~l 238 (353)
..+ ..+++|++|++.+|......+.. ...+++|++|+++.|.+.. ++..+..+++|+.|++++|.++ ..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 222 35789999999887654322211 2357899999999998873 3444456789999999999887 33
Q ss_pred chhHhh-ccCCceecccccc
Q 043910 239 PTNVIH-LSRLHSFCLSYCE 257 (353)
Q Consensus 239 ~~~l~~-l~~L~~L~l~~~~ 257 (353)
...+.. + ...++++.+.
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333333 2 3456666643
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-06 Score=77.25 Aligned_cols=268 Identities=8% Similarity=0.073 Sum_probs=140.1
Q ss_pred ccccCHHHHhcCC-CCcEEEeeeCCCCCCccceeecCCCCCC-CccceEeecccC---CCCCC--CCCCCCCceEEEccC
Q 043910 17 EIHLYSDTFTKMR-KLRFLKFYNSSINGENKCKVSNIQDPVF-PEIRYLFWHGYP---LKSLP--SITHPAKLVLLEVPH 89 (353)
Q Consensus 17 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~---~~~l~--~~~~~~~L~~L~L~~ 89 (353)
+..+...+|.+++ .|+.+.+... ++ ..-..+|.. ..|+.+.+..+. ++.+. .+..+.+|+.+.+..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD 123 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC
Confidence 3455667777774 4888887653 21 112334433 337777776653 33343 223566677666654
Q ss_pred CCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCccc
Q 043910 90 SNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEEL 168 (353)
Q Consensus 90 ~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 168 (353)
+ ++.+.. .+..+.+|+.+.+... ++.+. ...+..+..|+.+.+..+ ...+........+|+.+.+..+...--
T Consensus 124 ~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~-~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~ 197 (394)
T 4gt6_A 124 S-VTEIDSEAFHHCEELDTVTIPEG--VTSVA-DGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIG 197 (394)
T ss_dssp T-CSEECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEEC
T ss_pred c-cceehhhhhhhhcccccccccce--eeeec-ccceecccccccccccce--eeEeccccccccceeEEEECCcccccc
Confidence 3 444433 3345677777776533 22222 235556666666666541 222222111223455555433211111
Q ss_pred CccccCCCCCCEEeccCC-----------------------------------CCCcccC-ccccCCCCCCEEEeeCccC
Q 043910 169 PSSIECLSRLLHLGLRDC-----------------------------------KRLKSLP-KGLCKLKSLKFLILNGCGI 212 (353)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~-----------------------------------~~~~~l~-~~~~~l~~L~~L~l~~~~i 212 (353)
..++..+.++........ ..+..+. ..|..+..|+.+.+..+..
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC
T ss_pred cchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc
Confidence 112222333322221110 0111121 2456677788877765433
Q ss_pred CccCcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecCCCcCccccCccc
Q 043910 213 TQLPENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADHCAALESLSDLF 287 (353)
Q Consensus 213 ~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~ 287 (353)
.--...+.++..|+.+.+. +.+..++. .+.+|.+|+.+++.. .++.+.. .+.+|+.+.+.. +++.++...
T Consensus 278 ~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~a 352 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESA 352 (394)
T ss_dssp EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGG
T ss_pred eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhH
Confidence 2223356677888888875 34555554 566788888888864 2555543 456788888754 467776554
Q ss_pred cccccccccEEEecCC
Q 043910 288 SISYDYYIRCFELSTN 303 (353)
Q Consensus 288 ~~~~~~~l~~l~~~~c 303 (353)
+ ..|.+|+.+++.+.
T Consensus 353 F-~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 353 F-SNCTALNNIEYSGS 367 (394)
T ss_dssp G-TTCTTCCEEEESSC
T ss_pred h-hCCCCCCEEEECCc
Confidence 4 35777888887654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-08 Score=78.99 Aligned_cols=87 Identities=11% Similarity=0.089 Sum_probs=50.9
Q ss_pred CCcEEEeeCCCCc-ccchhHhhccCCceecccccccccc-----CCCC---CCCcceeecCCCcCccccCcccccccccc
Q 043910 224 SLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQS-----LPKL---PCNLKELDADHCAALESLSDLFSISYDYY 294 (353)
Q Consensus 224 ~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~-----l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 294 (353)
.|++||+++|.++ .-...+.++++|++|++++|..++. +... +++|++|++++|+.+++.+..... .+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCC
Confidence 3444444444443 1122234455555555555543322 2221 246788888888888887765554 5788
Q ss_pred ccEEEecCCccCchHHH
Q 043910 295 IRCFELSTNYKLDRNEL 311 (353)
Q Consensus 295 l~~l~~~~c~~l~~~~~ 311 (353)
|+.|++++|+.+++...
T Consensus 141 L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp CCEEEEESCTTCCCHHH
T ss_pred CCEEECCCCCCCCchHH
Confidence 88899999988887643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.5e-06 Score=73.82 Aligned_cols=240 Identities=11% Similarity=0.099 Sum_probs=120.8
Q ss_pred cccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCC-CCCCCCceEEEccCCCccccC
Q 043910 18 IHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPS-ITHPAKLVLLEVPHSNIQQLG 96 (353)
Q Consensus 18 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~L~~~~i~~l~ 96 (353)
..+...+|.+|.+|+.+.+.++ ++ ..-..+|..-.+..+.+.. .++.++. .+...+|+.+++..+ +..+.
T Consensus 58 t~Ig~~aF~~C~~L~~I~lp~~-v~------~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~-~~~i~ 128 (379)
T 4h09_A 58 TSIGEANFNSCYNMTKVTVAST-VT------SIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA-TTEIG 128 (379)
T ss_dssp EEECTTTTTTCTTCCEEEECTT-CC------EECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTT-CCEEC
T ss_pred cChHHHHhhCCCCCCEEEeCCc-ce------EechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCc-ccccc
Confidence 3455678888888888888653 21 1122333333455555542 2333432 223346777777653 33444
Q ss_pred CCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcc--------------------------------
Q 043910 97 DGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKR-------------------------------- 144 (353)
Q Consensus 97 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------------------------- 144 (353)
...+...+++.+.+... ++.+. ...+..+..++.+.+........
T Consensus 129 ~~~F~~~~l~~~~~~~~--v~~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
T 4h09_A 129 NYIFYNSSVKRIVIPKS--VTTIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV 205 (379)
T ss_dssp TTTTTTCCCCEEEECTT--CCEEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC
T ss_pred ccccccceeeeeeccce--eeccc-cchhcccccccccccccccceeecccceecccccceeccccccccccccccccce
Confidence 44444445555554432 22222 22445555565555443221100
Q ss_pred ---cchhhhcCCCccEEEccCccCccc-CccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccC-cc
Q 043910 145 ---LPAEILSAGNMEEMILNGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLP-EN 218 (353)
Q Consensus 145 ---~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~-~~ 218 (353)
....+..+.+++.+.+..+ ++.+ ...+..+.+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +..++ ..
T Consensus 206 ~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~a 281 (379)
T 4h09_A 206 KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLL 281 (379)
T ss_dssp CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTT
T ss_pred eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccc
Confidence 0111223344444444332 2222 123455666666666542 34443 24556777777776543 44333 24
Q ss_pred cCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccccCCC----CCCCcceeecC
Q 043910 219 LGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDAD 275 (353)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~ 275 (353)
+..+.+|+.+.+.++.+..+.. .+.+|.+|+.+.+.. .++.+.. .+.+|+.+.+.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 5667778888777777766644 556777777777753 2444433 23455555553
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-07 Score=75.51 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=18.5
Q ss_pred ccCCccCcEEeecCC-CCCcc----cchhhhcCCCccEEEccCccCc
Q 043910 125 IRSLNKLTILNLSGC-SQLKR----LPAEILSAGNMEEMILNGTAIE 166 (353)
Q Consensus 125 ~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~i~ 166 (353)
+...+.|++|++++| ..... +...+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 334455555555554 22211 1222333445555555555444
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.3e-05 Score=68.94 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=118.8
Q ss_pred cccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC-CccceEeecccCCCCCC--CCCCCCCceEEEccCCCccc
Q 043910 18 IHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF-PEIRYLFWHGYPLKSLP--SITHPAKLVLLEVPHSNIQQ 94 (353)
Q Consensus 18 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~L~~~~i~~ 94 (353)
..+...+|.+|.+|+.+.+.++-. ......+.. ..|+.+.+... +..++ ....+..|+.+.+..+ +..
T Consensus 103 ~~Ig~~aF~~c~~L~~i~~~~~~~-------~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~ 173 (394)
T 4gt6_A 103 KKIGRQAFMFCSELTDIPILDSVT-------EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTA 173 (394)
T ss_dssp CEECTTTTTTCTTCCBCGGGTTCS-------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred eEechhhchhcccceeeccCCccc-------eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeE
Confidence 345677899999998887765321 111223332 33888877543 33343 2336788888888753 666
Q ss_pred cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhh--------------hcCCCccEEEc
Q 043910 95 LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEI--------------LSAGNMEEMIL 160 (353)
Q Consensus 95 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------~~~~~L~~L~l 160 (353)
+....+....|+.+.+.... +.+. ..++..+..++......... ......+ .....+..+.+
T Consensus 174 I~~~aF~~~~l~~i~ip~~~--~~i~-~~af~~c~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 249 (394)
T 4gt6_A 174 IEERAFTGTALTQIHIPAKV--TRIG-TNAFSECFALSTITSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPAFKI 249 (394)
T ss_dssp ECTTTTTTCCCSEEEECTTC--CEEC-TTTTTTCTTCCEEEECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSEEEC
T ss_pred eccccccccceeEEEECCcc--cccc-cchhhhccccceeccccccc-ccccceeecccccccccccccccccccceEEc
Confidence 66666677788888876542 2222 23566667777665543211 1110000 01112222222
Q ss_pred cCccCccc-CccccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCcc
Q 043910 161 NGTAIEEL-PSSIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 161 ~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~~ 237 (353)
.. .++.+ ..++..+.+|+.+.+.. . ...+. ..+..+.+|+.+.+.. .++.++. .+..+.+|+.+++..+ ++.
T Consensus 250 p~-~v~~i~~~aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~ 324 (394)
T 4gt6_A 250 PN-GVARIETHAFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQ 324 (394)
T ss_dssp CT-TEEEECTTTTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred CC-cceEcccceeeecccccEEeccc-c-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccE
Confidence 11 11111 12345555666665543 1 22222 2445556666665542 3333332 3455566666666433 443
Q ss_pred cch-hHhhccCCceeccccccccccCCC----CCCCcceeecCC
Q 043910 238 IPT-NVIHLSRLHSFCLSYCERLQSLPK----LPCNLKELDADH 276 (353)
Q Consensus 238 l~~-~l~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~ 276 (353)
+.. ++.+|.+|+.+.+.. .++.+.. .+.+|+.+++.+
T Consensus 325 I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 332 445566666665543 2344432 344555555544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.30 E-value=6.2e-07 Score=71.41 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=41.2
Q ss_pred CccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccc-hhhhcC----CCccEEEccCc-cCcc-cCccccCCC
Q 043910 104 KLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLP-AEILSA----GNMEEMILNGT-AIEE-LPSSIECLS 176 (353)
Q Consensus 104 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~----~~L~~L~l~~~-~i~~-l~~~~~~l~ 176 (353)
+|+.|++++|. +++.. ...+..+++|++|++++|..+++.. ..+..+ ++|++|++++| .+++ --..+..++
T Consensus 62 ~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 44555555543 33221 2344555566666666665444321 112221 24555555555 3541 112344566
Q ss_pred CCCEEeccCCCCCcc
Q 043910 177 RLLHLGLRDCKRLKS 191 (353)
Q Consensus 177 ~L~~L~l~~~~~~~~ 191 (353)
+|++|++++|..++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 666666666665553
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.4e-07 Score=75.21 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=60.6
Q ss_pred hhcCCCccEEEccCc-cCcc-----cCccccCCCCCCEEeccCCCCCcc----cCccccCCCCCCEEEeeCccCCc----
Q 043910 149 ILSAGNMEEMILNGT-AIEE-----LPSSIECLSRLLHLGLRDCKRLKS----LPKGLCKLKSLKFLILNGCGITQ---- 214 (353)
Q Consensus 149 ~~~~~~L~~L~l~~~-~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~~---- 214 (353)
+...+.|++|++++| .+.. +...+...++|++|++++|..-.. +...+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345566677777666 6552 233445556667777766543221 22233445566677777766652
Q ss_pred -cCcccCCCCCCcEEEe--eCCCCcc-----cchhHhhccCCceeccccc
Q 043910 215 -LPENLGQLFSLEEFCL--RKTKFEK-----IPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 215 -~~~~~~~l~~L~~L~l--~~~~l~~-----l~~~l~~l~~L~~L~l~~~ 256 (353)
+...+...++|++|++ ++|.+.. +...+...+.|++|++++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3444555566777777 6666651 3334455566777777665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.17 E-value=8.7e-07 Score=75.85 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=53.3
Q ss_pred cCCCCCCEEeccCCCCCc--ccCccccCCCCCCEEEeeCccCCccCcccCCCC--CCcEEEeeCCCCc-ccc-------h
Q 043910 173 ECLSRLLHLGLRDCKRLK--SLPKGLCKLKSLKFLILNGCGITQLPENLGQLF--SLEEFCLRKTKFE-KIP-------T 240 (353)
Q Consensus 173 ~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~--~L~~L~l~~~~l~-~l~-------~ 240 (353)
..+++|++|++++|...+ .+|..+..+++|+.|++++|.++.+.. +..+. +|++|++++|++. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456788888888754322 334455678888888888888775522 33333 8888888888886 343 2
Q ss_pred hHhhccCCceec
Q 043910 241 NVIHLSRLHSFC 252 (353)
Q Consensus 241 ~l~~l~~L~~L~ 252 (353)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356788888876
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=64.49 Aligned_cols=127 Identities=11% Similarity=0.151 Sum_probs=92.8
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccCc-cccCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLPK-GLCKLKS 201 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~ 201 (353)
.+..+..|+.+.+.. .....-...+..+.+|+.+.+..+ ++.+.. ++..+.+|+.+.+.. .+..++. .|..+.+
T Consensus 212 ~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred ccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccc
Confidence 455667788877765 222222345677889999998765 555543 567889999999865 3555553 6789999
Q ss_pred CCEEEeeCccCCccC-cccCCCCCCcEEEeeCCCCcccch-hHhhccCCceecccc
Q 043910 202 LKFLILNGCGITQLP-ENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSY 255 (353)
Q Consensus 202 L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~ 255 (353)
|+.+.+..+.++.++ ..+.++.+|+.+++..+ +..+.. ++.+|++|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 999999988888775 46788999999999654 666654 567888898887754
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2.4e-05 Score=66.83 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=48.2
Q ss_pred cCCCccEEEccCccCccc---CccccCCCCCCEEeccCCCCCcccCccccCCC--CCCEEEeeCccCC-ccCc-------
Q 043910 151 SAGNMEEMILNGTAIEEL---PSSIECLSRLLHLGLRDCKRLKSLPKGLCKLK--SLKFLILNGCGIT-QLPE------- 217 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~i~-~~~~------- 217 (353)
.+++|+.|+|++|.++.+ +..+..+++|++|+|++|. ++.+. .+..+. +|++|++.+|.+. .+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 467778888888777754 3445567788888887744 44332 223333 7888888888776 2331
Q ss_pred ccCCCCCCcEEE
Q 043910 218 NLGQLFSLEEFC 229 (353)
Q Consensus 218 ~~~~l~~L~~L~ 229 (353)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245667777765
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0019 Score=52.24 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=16.8
Q ss_pred CCCCCEEEeeCccCC-----ccCcccCCCCCCcEEEeeCC
Q 043910 199 LKSLKFLILNGCGIT-----QLPENLGQLFSLEEFCLRKT 233 (353)
Q Consensus 199 l~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~ 233 (353)
-+.|+.|++++|.|. .+.+.+..-..|++|+++++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344555555555544 22333444445555555543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0027 Score=51.28 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=53.9
Q ss_pred CccCcEEeecCCCCCcc-----cchhhhcCCCccEEEccCccCcc-----cCccccCCCCCCEEeccCCCCCcc----cC
Q 043910 128 LNKLTILNLSGCSQLKR-----LPAEILSAGNMEEMILNGTAIEE-----LPSSIECLSRLLHLGLRDCKRLKS----LP 193 (353)
Q Consensus 128 l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~----l~ 193 (353)
-+.|++|++++++.+++ +...+..-+.|+.|+|++|.|.+ +...+..-+.|++|+|++|..-.. +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 34555666655323322 22223344556666666666651 223344445666666666432221 22
Q ss_pred ccccCCCCCCEEEeeCcc---CC-----ccCcccCCCCCCcEEEeeCCCC
Q 043910 194 KGLCKLKSLKFLILNGCG---IT-----QLPENLGQLFSLEEFCLRKTKF 235 (353)
Q Consensus 194 ~~~~~l~~L~~L~l~~~~---i~-----~~~~~~~~l~~L~~L~l~~~~l 235 (353)
..+..-+.|+.|+++++. +. .+.+.+..-+.|+.|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 234444557777776542 22 1233344456777777766654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.011 Score=44.43 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=38.6
Q ss_pred EEeccCCCCCc--ccCccccCCCCCCEEEeeCccCCccCcc-cCCCCCCcEEEeeCCCCc
Q 043910 180 HLGLRDCKRLK--SLPKGLCKLKSLKFLILNGCGITQLPEN-LGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 180 ~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~l~ 236 (353)
.++-++ +.++ .+|..+ ..+|+.|++++|.|+.++.. +..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 566665 4555 677542 34688888888888877653 567788888888888874
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.087 Score=39.37 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=16.1
Q ss_pred CCCEEeccCCCCCcccCc-cccCCCCCCEEEeeCccC
Q 043910 177 RLLHLGLRDCKRLKSLPK-GLCKLKSLKFLILNGCGI 212 (353)
Q Consensus 177 ~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i 212 (353)
+|++|+|++ +.++.+|. .|..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 345555554 22333332 344455555555555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 353 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-04 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.3 bits (111), Expect = 9e-07
Identities = 38/247 (15%), Positives = 83/247 (33%), Gaps = 9/247 (3%)
Query: 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYP 69
LD+ + + F ++ L L N+ I+ + + ++ L+
Sbjct: 36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-----LVKLERLYLSKNQ 90
Query: 70 LKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLN 129
LK LP L + + ++ + + + +
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 130 KLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEE-LPSSIECLSRLLHLGLRDCKR 188
KL+ + ++ + +P + ++ E+ L+G I + +S++ L+ L LGL
Sbjct: 151 KLSYIRIADT-NITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 189 LKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRL 248
L L+ L LN + ++P L ++ L I +N
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267
Query: 249 HSFCLSY 255
++ SY
Sbjct: 268 NTKKASY 274
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 4/167 (2%)
Query: 107 QIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE 166
++ N +T+ + F ++L L L L K P +E + L+ ++
Sbjct: 34 ALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 167 ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSL 225
ELP + + L + + +++ + L N + + L
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 226 EEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKEL 272
+ T IP + L L + + L L
Sbjct: 153 SYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 4e-06
Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 12/199 (6%)
Query: 57 FPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFV 116
+ L + + + L L + + ++ +G + A N +
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQI 253
Query: 117 TKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLS 176
+ + L KLT L L P L+A E+ N E S I L
Sbjct: 254 SNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN---QLEDISPISNLK 307
Query: 177 RLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236
L +L L P + L L+ L ++ + L L ++ +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQIS 364
Query: 237 KIPTNVIHLSRLHSFCLSY 255
+ + +L+R+ L+
Sbjct: 365 DLT-PLANLTRITQLGLND 382
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.4 bits (103), Expect = 1e-05
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 197 CKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYC 256
SL+ L ++ + +LP LE ++P +L +LH + Y
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQLH---VEYN 334
Query: 257 ERLQSLPKLPCNLKELDAD 275
L+ P +P ++++L +
Sbjct: 335 -PLREFPDIPESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 9e-05
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGL 183
L LN+S +L LPA +E +I + + E+P E L L +
Sbjct: 279 LCDLPPSLEELNVSNN-KLIELPALP---PRLERLIASFNHLAEVP---ELPQNLKQLHV 331
Query: 184 RDCKRLKSLPKGLCKLKSLKF 204
L+ P ++ L+
Sbjct: 332 EYNP-LREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 221 QLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHCAAL 280
SLEE + K ++P L RL S+ L +P+LP NLK+L ++ L
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLERLI---ASFN-HLAEVPELPQNLKQLHVEYN-PL 336
Query: 281 ESLSDLFS 288
D+
Sbjct: 337 REFPDIPE 344
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.88 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.87 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.85 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.84 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.84 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.84 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.81 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.81 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.81 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.76 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.76 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.7 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.65 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.61 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.59 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.58 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.51 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.45 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.43 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.3 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.23 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.23 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.15 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.12 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.1 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.1 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.99 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.66 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.65 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.64 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.11 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.91 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.88 E-value=2.1e-22 Score=177.38 Aligned_cols=247 Identities=15% Similarity=0.151 Sum_probs=199.4
Q ss_pred CCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecc-cCCC-CCC-CCCCCCCceEEEccCCCccccCC-CCcCCCC
Q 043910 30 KLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHG-YPLK-SLP-SITHPAKLVLLEVPHSNIQQLGD-GGQHHCK 104 (353)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~-~~~~-~l~-~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~ 104 (353)
+++.|+++++.+.+.. ..+..+..++ |++|++++ |.+. .+| .+.++++|++|++++|++.++.. ....+.+
T Consensus 51 ~v~~L~L~~~~l~g~~----~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~ 126 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPY----PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCE----ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred EEEEEECCCCCCCCCC----CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence 6889999999887642 2345555555 99999987 5654 677 46689999999999999988654 4566899
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCc-cEEEccCccCcc-cCccccCCCCCCEEe
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNM-EEMILNGTAIEE-LPSSIECLSRLLHLG 182 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~i~~-l~~~~~~l~~L~~L~ 182 (353)
|+.++++++...... +..+..++.++++++++|...+.+|..+..+.++ +.+.+++|+++. .|..+..+. ..+++
T Consensus 127 L~~l~l~~N~~~~~~--p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~ 203 (313)
T d1ogqa_ 127 LVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp CCEEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred hcccccccccccccC--chhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 999999988654333 3578899999999999988888889888888775 889999999984 455565554 45789
Q ss_pred ccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc-ccchhHhhccCCceecccccccccc
Q 043910 183 LRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE-KIPTNVIHLSRLHSFCLSYCERLQS 261 (353)
Q Consensus 183 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~ 261 (353)
+..+.....+|..+..+++++.+++.++.+...+..+..+++|+.|++++|++. .+|..++++++|++|++++|...+.
T Consensus 204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~ 283 (313)
T d1ogqa_ 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence 988777777888888999999999999998866667888999999999999998 8999999999999999999876668
Q ss_pred CCCC--CCCcceeecCCCcCcccc
Q 043910 262 LPKL--PCNLKELDADHCAALESL 283 (353)
Q Consensus 262 l~~~--~~~L~~L~l~~c~~l~~~ 283 (353)
+|.. +++|+.+++.+++.+...
T Consensus 284 iP~~~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 284 IPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCCSTTGGGSCGGGTCSSSEEEST
T ss_pred CCCcccCCCCCHHHhCCCccccCC
Confidence 8864 467888888888766544
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.87 E-value=1.1e-20 Score=170.49 Aligned_cols=168 Identities=20% Similarity=0.299 Sum_probs=100.6
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLK 203 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 203 (353)
....+++++.+++++|...+ ++. ...+++|+.|++++|.++.++ .+..+++|+++++++|. ++.++. ++.+++|+
T Consensus 192 ~~~~l~~~~~l~l~~n~i~~-~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~ 266 (384)
T d2omza2 192 VLAKLTNLESLIATNNQISD-ITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLT 266 (384)
T ss_dssp GGGGCTTCSEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCS
T ss_pred ccccccccceeeccCCccCC-CCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCc-cCCCCc-ccccccCC
Confidence 44566777788887754333 322 455677888888888777664 46677778888887754 444443 66777778
Q ss_pred EEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCC--CCCCCcceeecCCCcCcc
Q 043910 204 FLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLP--KLPCNLKELDADHCAALE 281 (353)
Q Consensus 204 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~--~~~~~L~~L~l~~c~~l~ 281 (353)
.|+++++.++.++. +..+..++.+++++|.+..++. +..+++++.|++++| .++.++ ..+++|++|++++| .++
T Consensus 267 ~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n-~l~ 342 (384)
T d2omza2 267 ELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANN-KVS 342 (384)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCC
T ss_pred EeeccCcccCCCCc-cccccccccccccccccccccc-cchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCC-CCC
Confidence 88777777665543 4455566666666666554432 455556666666654 233332 23455666666665 455
Q ss_pred ccCccccccccccccEEEecCC
Q 043910 282 SLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 282 ~~~~~~~~~~~~~l~~l~~~~c 303 (353)
+++. ...+++|+.|++++|
T Consensus 343 ~l~~---l~~l~~L~~L~l~~N 361 (384)
T d2omza2 343 DVSS---LANLTNINWLSAGHN 361 (384)
T ss_dssp CCGG---GGGCTTCCEEECCSS
T ss_pred CChh---HcCCCCCCEEECCCC
Confidence 5442 123455666666555
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.85 E-value=7.8e-20 Score=164.94 Aligned_cols=267 Identities=16% Similarity=0.240 Sum_probs=176.8
Q ss_pred eCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccC
Q 043910 11 DMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPH 89 (353)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~ 89 (353)
++++..+.++. .+..+++|++|++++|.+++.. .+..++ |++|++++|++..++++..+++|+.|++++
T Consensus 50 ~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~--------~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~ 119 (384)
T d2omza2 50 QADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119 (384)
T ss_dssp ECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCc--------cccCCcccccccccccccccccccccccccccccccc
Confidence 33444433432 3566777777777777765421 133333 777777777777777666777777777766
Q ss_pred CCccccCC----------------------------------------------------------------CCcCCCCc
Q 043910 90 SNIQQLGD----------------------------------------------------------------GGQHHCKL 105 (353)
Q Consensus 90 ~~i~~l~~----------------------------------------------------------------~~~~~~~L 105 (353)
+.++.+.. ....++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (384)
T d2omza2 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199 (384)
T ss_dssp SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 55432210 11223445
Q ss_pred cEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccC
Q 043910 106 SQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRD 185 (353)
Q Consensus 106 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 185 (353)
..++++++. ++ .......+++|++|++++|. +..++ .+..+++|+.+++++|.++.+++ +..+++|+++++++
T Consensus 200 ~~l~l~~n~-i~---~~~~~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~ 272 (384)
T d2omza2 200 ESLIATNNQ-IS---DITPLGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA 272 (384)
T ss_dssp SEEECCSSC-CC---CCGGGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred ceeeccCCc-cC---CCCcccccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccC
Confidence 555555542 22 22345667788888888864 34444 46778888888888888887653 67788888888887
Q ss_pred CCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCC-
Q 043910 186 CKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPK- 264 (353)
Q Consensus 186 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~- 264 (353)
+. +..+++ +..++.++.+.+..|.+..++. +..+++++.|++++|.+..++. +..+++|++|++++| .++.++.
T Consensus 273 ~~-l~~~~~-~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~~l 347 (384)
T d2omza2 273 NQ-ISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN-KVSDVSSL 347 (384)
T ss_dssp SC-CCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGG
T ss_pred cc-cCCCCc-cccccccccccccccccccccc-cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCC-CCCCChhH
Confidence 43 454543 6678888888888888876654 6677888888888888887654 678888888888887 4555542
Q ss_pred -CCCCcceeecCCCcCccccCccccccccccccEEEecCC
Q 043910 265 -LPCNLKELDADHCAALESLSDLFSISYDYYIRCFELSTN 303 (353)
Q Consensus 265 -~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c 303 (353)
.+++|++|++++| .+++++. ...+++|+.|++++.
T Consensus 348 ~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~N 383 (384)
T d2omza2 348 ANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQ 383 (384)
T ss_dssp GGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCCE
T ss_pred cCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCCC
Confidence 3578888888877 5776654 234577888887764
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.84 E-value=9e-21 Score=166.77 Aligned_cols=246 Identities=17% Similarity=0.143 Sum_probs=191.2
Q ss_pred EEEEeCCCccccc--cCHHHHhcCCCCcEEEeee-CCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCC
Q 043910 7 GICLDMSKVEEIH--LYSDTFTKMRKLRFLKFYN-SSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPA 80 (353)
Q Consensus 7 ~i~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~ 80 (353)
...+|++++.... --+.++.++++|++|++++ |.++|.+| ..+..+. |++|++++|++..++. ...+.
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP------~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~ 125 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP------PAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC------GGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc------cccccccccchhhhccccccccccccccchh
Confidence 4445555543322 2356889999999999997 67776554 3344445 9999999999886553 44789
Q ss_pred CceEEEccCCCccc-cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccC-cEEeecCCCCCcccchhhhcCCCccEE
Q 043910 81 KLVLLEVPHSNIQQ-LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKL-TILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 81 ~L~~L~L~~~~i~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
.|+.+++++|.+.. ++..+..++.++.++++++.....+ +..+..+..+ +.+++++|+..+..|..+..+.. ..+
T Consensus 126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i--p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l 202 (313)
T d1ogqa_ 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFV 202 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEE
T ss_pred hhcccccccccccccCchhhccCcccceeecccccccccc--cccccccccccccccccccccccccccccccccc-ccc
Confidence 99999999998765 5567788999999999987543222 3455566665 88999998777777776666654 468
Q ss_pred EccCccCc-ccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCC-ccCcccCCCCCCcEEEeeCCCCc
Q 043910 159 ILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGIT-QLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 159 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
++..+... .+|..+..+++++.+++++|.....+ ..++.+++|+.|++++|+++ .+|..++.+++|++|++++|+++
T Consensus 203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~ 281 (313)
T d1ogqa_ 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence 88888776 56777888999999999987654444 45888999999999999998 79999999999999999999998
Q ss_pred -ccchhHhhccCCceeccccccccccCC
Q 043910 237 -KIPTNVIHLSRLHSFCLSYCERLQSLP 263 (353)
Q Consensus 237 -~l~~~l~~l~~L~~L~l~~~~~l~~l~ 263 (353)
.+|. ++++++|+.+++++|+.+...|
T Consensus 282 g~iP~-~~~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred ccCCC-cccCCCCCHHHhCCCccccCCC
Confidence 7775 5788999999999998776544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.84 E-value=9.4e-20 Score=159.55 Aligned_cols=253 Identities=16% Similarity=0.158 Sum_probs=195.4
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC--CCCCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS--ITHPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~--~~~~~~L~~L~ 86 (353)
+|+++....+++.. + .+++++|++++|.++... ...+..+. |++|+++++.+..++. +..+++|+.|+
T Consensus 15 ~~C~~~~L~~lP~~-l--~~~l~~L~Ls~N~i~~l~------~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~ 85 (305)
T d1xkua_ 15 VQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEIK------DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85 (305)
T ss_dssp EECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCBC------TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred EEecCCCCCccCCC-C--CCCCCEEECcCCcCCCcC------hhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence 46666555555443 2 368999999999885421 12455444 9999999999988863 44799999999
Q ss_pred ccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCC--cccchhhhcCCCccEEEccCcc
Q 043910 87 VPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQL--KRLPAEILSAGNMEEMILNGTA 164 (353)
Q Consensus 87 L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 164 (353)
+++|+++.++.. ..+.+..|...++. ++... ...+.....++.++...+... ...+..+..+++|+.+++++|.
T Consensus 86 l~~n~l~~l~~~--~~~~l~~L~~~~n~-l~~l~-~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~ 161 (305)
T d1xkua_ 86 LSKNQLKELPEK--MPKTLQELRVHENE-ITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161 (305)
T ss_dssp CCSSCCSBCCSS--CCTTCCEEECCSSC-CCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ccCCccCcCccc--hhhhhhhhhccccc-hhhhh-hhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence 999999988754 45688889888763 33332 224566777888888775432 2334557788999999999999
Q ss_pred CcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCcc-CcccCCCCCCcEEEeeCCCCcccchhHh
Q 043910 165 IEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQL-PENLGQLFSLEEFCLRKTKFEKIPTNVI 243 (353)
Q Consensus 165 i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~l~~l~~~l~ 243 (353)
++.+|..+ +++|++|++++|......+..+..++.++.|++++|.++.+ +..+..+++|++|++++|.++.+|..+.
T Consensus 162 l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~ 239 (305)
T d1xkua_ 162 ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239 (305)
T ss_dssp CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTT
T ss_pred ccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence 99887654 68999999999776666777889999999999999999876 4567888999999999999999998899
Q ss_pred hccCCceeccccccccccCCC----------CCCCcceeecCCCc
Q 043910 244 HLSRLHSFCLSYCERLQSLPK----------LPCNLKELDADHCA 278 (353)
Q Consensus 244 ~l~~L~~L~l~~~~~l~~l~~----------~~~~L~~L~l~~c~ 278 (353)
++++|+.|++++| .++.++. ...+|+.|++++++
T Consensus 240 ~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 240 DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 9999999999996 4766653 23679999999986
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.84 E-value=2e-19 Score=157.45 Aligned_cols=257 Identities=14% Similarity=0.157 Sum_probs=187.8
Q ss_pred CcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCC--CCCCCCceEEEccCCCccccCC-CCcCCCCccE
Q 043910 31 LRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQ 107 (353)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~ 107 (353)
.+.++-++..++ ..|..+. ..+++|++++|+++.+++ +..+++|+.|++++|.+..+++ .+..+++|+.
T Consensus 12 ~~~~~C~~~~L~-------~lP~~l~-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~ 83 (305)
T d1xkua_ 12 LRVVQCSDLGLE-------KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 83 (305)
T ss_dssp TTEEECTTSCCC-------SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCC-------ccCCCCC-CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCE
Confidence 456666655553 2233331 239999999999999884 4478999999999999988754 4667899999
Q ss_pred EecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCc---ccCccccCCCCCCEEecc
Q 043910 108 IITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIE---ELPSSIECLSRLLHLGLR 184 (353)
Q Consensus 108 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~ 184 (353)
|++++|. ++.++. .....++.|.+.+|......+..+.....++.+....+... ..+..+..+++|++++++
T Consensus 84 L~l~~n~-l~~l~~----~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~ 158 (305)
T d1xkua_ 84 LYLSKNQ-LKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 158 (305)
T ss_dssp EECCSSC-CSBCCS----SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred ecccCCc-cCcCcc----chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence 9999874 444432 23467888998886544433344556777888888877544 234467778899999998
Q ss_pred CCCCCcccCccccCCCCCCEEEeeCccCCc-cCcccCCCCCCcEEEeeCCCCcccc-hhHhhccCCceeccccccccccC
Q 043910 185 DCKRLKSLPKGLCKLKSLKFLILNGCGITQ-LPENLGQLFSLEEFCLRKTKFEKIP-TNVIHLSRLHSFCLSYCERLQSL 262 (353)
Q Consensus 185 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~l 262 (353)
+|. +..+|.. .+++|+.|++++|.+.. .+..+..++.++.|++++|.+..++ ..+.++++|++|++++| .++.+
T Consensus 159 ~n~-l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l 234 (305)
T d1xkua_ 159 DTN-ITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV 234 (305)
T ss_dssp SSC-CCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSC
T ss_pred cCC-ccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-ccccc
Confidence 854 5556643 36789999999998774 4566788899999999999998664 46788999999999997 57777
Q ss_pred CCC---CCCcceeecCCCcCccccCccccc-----cccccccEEEecCCcc
Q 043910 263 PKL---PCNLKELDADHCAALESLSDLFSI-----SYDYYIRCFELSTNYK 305 (353)
Q Consensus 263 ~~~---~~~L~~L~l~~c~~l~~~~~~~~~-----~~~~~l~~l~~~~c~~ 305 (353)
|.. +++|+.|+++++ .++.++...+. .....++.+++.+++.
T Consensus 235 p~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 235 PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 753 478999999997 58888654432 3456788999998863
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.9e-19 Score=151.67 Aligned_cols=197 Identities=20% Similarity=0.325 Sum_probs=162.5
Q ss_pred cceEeecccCCCCCCC--CCCCCCceEEEccCCCccccCCCC-cCCCCccEEecCCCcCcCCCCCCccccCCccCcEEee
Q 043910 60 IRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQLGDGG-QHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNL 136 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 136 (353)
+++|+|++|+++.+|. +..+++|+.|+++++.+..++... .....+..+....++.++.++ ...++.+++|++|++
T Consensus 34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHL 112 (284)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEEC
T ss_pred CCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc-chhhcccccCCEEec
Confidence 8999999999998884 457899999999999998876544 447888888888887777664 457889999999999
Q ss_pred cCCCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCc
Q 043910 137 SGCSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQ 214 (353)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~ 214 (353)
++|......+..+....+|+.+++++|.++.+|. .+..+++|++|++++|. ++.++ ..+..+++|+.+++++|.++.
T Consensus 113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhccccc
Confidence 9976654445567778899999999999998864 57788999999999865 55554 577889999999999999985
Q ss_pred c-CcccCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccc
Q 043910 215 L-PENLGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCER 258 (353)
Q Consensus 215 ~-~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~ 258 (353)
+ |..+..+++|++|++++|.+..++. .+..+++|++|++++|+.
T Consensus 192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (284)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence 5 6778899999999999999996654 678899999999998753
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3e-19 Score=153.22 Aligned_cols=197 Identities=17% Similarity=0.197 Sum_probs=135.6
Q ss_pred cCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCC--CCCCCCceEEEccCCCccccCCCCcCCCC
Q 043910 27 KMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQLGDGGQHHCK 104 (353)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~l~~~~~~~~~ 104 (353)
+...+.+++.+++.++. .|+.+. ..+++|+|++|.++.++. +..+++|++|+|++|.|+.++. ...+++
T Consensus 8 ~~~~~~~v~C~~~~L~~-------iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~ 78 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTA-------LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPV 78 (266)
T ss_dssp CSTTCCEEECTTSCCSS-------CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTT
T ss_pred ccCCCeEEEccCCCCCe-------eCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccc
Confidence 45566667777766642 222221 237888888888877762 4467888888888888877654 356778
Q ss_pred ccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCcc-ccCCCCCCEEec
Q 043910 105 LSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSS-IECLSRLLHLGL 183 (353)
Q Consensus 105 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l 183 (353)
|+.|++++|. ++.. ...+..+++|++|++++|......+..+..+.+++.|++++|.++.++.. +..+++++++++
T Consensus 79 L~~L~Ls~N~-l~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l 155 (266)
T d1p9ag_ 79 LGTLDLSHNQ-LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (266)
T ss_dssp CCEEECCSSC-CSSC--CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccccccccc-cccc--ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence 8888888764 3333 23566777888888887665554455566777888888888887776553 456778888888
Q ss_pred cCCCCCcccC-ccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCc
Q 043910 184 RDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 184 ~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
++|. ++.++ ..+..+++|++|++++|+++.+|+.+..+++|+.|++++|++.
T Consensus 156 ~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 156 ANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccc-ccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 8754 44444 4567788888888888888888777777788888888887754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=6.8e-19 Score=150.93 Aligned_cols=191 Identities=22% Similarity=0.206 Sum_probs=153.8
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSG 138 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 138 (353)
+..++-+++.++.+|... .++++.|+|++|.|++++. .+..+++|++|++++|. ++.+ +.++.+++|++|++++
T Consensus 12 ~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l---~~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 12 HLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKL---QVDGTLPVLGTLDLSH 86 (266)
T ss_dssp CCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEE---ECCSCCTTCCEEECCS
T ss_pred CeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccc---cccccccccccccccc
Confidence 445677788888888543 3689999999999998875 45678999999999874 4433 3467889999999999
Q ss_pred CCCCcccchhhhcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccC
Q 043910 139 CSQLKRLPAEILSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLP 216 (353)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~ 216 (353)
|. +...+..+..+++|+.|+++++.+..++. .+..+.++++|++++|. ++.++ ..+..+++|+.+++++|+++.++
T Consensus 87 N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~ 164 (266)
T d1p9ag_ 87 NQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (266)
T ss_dssp SC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred cc-ccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccccC
Confidence 65 44556678889999999999998886544 55678899999999854 55555 45677899999999999998776
Q ss_pred c-ccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccc
Q 043910 217 E-NLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCE 257 (353)
Q Consensus 217 ~-~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 257 (353)
. .+..+++|++|++++|+++.+|..+..+++|+.|++++|+
T Consensus 165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence 4 5778899999999999999999888889999999999875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1e-17 Score=144.88 Aligned_cols=216 Identities=17% Similarity=0.178 Sum_probs=164.7
Q ss_pred EeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCC--CCCCceEEE
Q 043910 10 LDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSIT--HPAKLVLLE 86 (353)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~--~~~~L~~L~ 86 (353)
+++++.....++... .+++++|++++|.++.. .+..+.... |++++++++.+..++... ....++.++
T Consensus 16 v~c~~~~L~~iP~~i---p~~~~~L~Ls~N~i~~i------~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~ 86 (284)
T d1ozna_ 16 TSCPQQGLQAVPVGI---PAASQRIFLHGNRISHV------PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (284)
T ss_dssp EECCSSCCSSCCTTC---CTTCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEcCCCCCCccCCCC---CCCCCEEECcCCcCCCC------CHHHhhccccccccccccccccccccccccccccccccc
Confidence 445554433443321 35789999999998531 123455555 999999999988776433 567888887
Q ss_pred cc-CCCccccCC-CCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCcc
Q 043910 87 VP-HSNIQQLGD-GGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTA 164 (353)
Q Consensus 87 L~-~~~i~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 164 (353)
.. .+.++.++. .+..+++|+.|++.++.. .... ...+..+.+|+.+++++|...+..+..+..+++|+.|++++|.
T Consensus 87 ~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~-~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~ 164 (284)
T d1ozna_ 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (284)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccccchhhcccccCCEEecCCccc-cccc-ccccchhcccchhhhccccccccChhHhccccchhhcccccCc
Confidence 65 566777654 456689999999998854 2232 3467788999999999965544334567789999999999999
Q ss_pred CcccCc-cccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccC-cccCCCCCCcEEEeeCCCCc
Q 043910 165 IEELPS-SIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLP-ENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 165 i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~l~ 236 (353)
++.+++ ++..+++|+++++++|......|..|..+++|++|++++|.+..++ ..++.+++|+.|++++|++.
T Consensus 165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 997754 6788999999999997766656788999999999999999999766 46789999999999999876
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.76 E-value=1.2e-17 Score=139.59 Aligned_cols=183 Identities=19% Similarity=0.282 Sum_probs=104.6
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
|++|.+.++.++.++.+.++++|+.|++++|.+..+.+ +..+++++.++++++. ++ ..+.+..+++|+.+++++|
T Consensus 43 L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~---~i~~l~~l~~L~~l~l~~~ 117 (227)
T d1h6ua2 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LK---NVSAIAGLQSIKTLDLTST 117 (227)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CS---CCGGGTTCTTCCEEECTTS
T ss_pred cCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-cc---ccccccccccccccccccc
Confidence 56666666666665555566666666666666655432 4556666666666552 12 2334556666666666664
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
..... + .+...+.++.+.++++.+.... .+..+++|++|++++|. +...+ .++++++|+.|++++|.++.++. +
T Consensus 118 ~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~-l 191 (227)
T d1h6ua2 118 QITDV-T-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNKISDISP-L 191 (227)
T ss_dssp CCCCC-G-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred ccccc-c-hhccccchhhhhchhhhhchhh-hhccccccccccccccc-cccch-hhcccccceecccCCCccCCChh-h
Confidence 43221 1 2444556666666666555432 24455666666666543 22222 25566666666666666665543 5
Q ss_pred CCCCCCcEEEeeCCCCcccchhHhhccCCceeccc
Q 043910 220 GQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLS 254 (353)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~ 254 (353)
+.+++|++|++++|+++++++ +.++++|+.|+++
T Consensus 192 ~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls 225 (227)
T d1h6ua2 192 ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225 (227)
T ss_dssp GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred cCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence 566666666666666666553 5566666666665
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=2.1e-17 Score=138.12 Aligned_cols=190 Identities=14% Similarity=0.204 Sum_probs=155.8
Q ss_pred HHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCC
Q 043910 24 TFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHH 102 (353)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~ 102 (353)
.++.+++|+.|++.+|.++. .+++..++ |+++++++|.++.++....+++++.+++++|.++.+. .+..+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--------l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l 106 (227)
T d1h6ua2 36 TQADLDGITTLSAFGTGVTT--------IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGL 106 (227)
T ss_dssp CHHHHHTCCEEECTTSCCCC--------CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred CHHHcCCcCEEECCCCCCCc--------chhHhcCCCCcEeecCCceeeccccccccccccccccccccccccc-ccccc
Confidence 34568899999999998753 13455555 9999999999999888889999999999999988764 46678
Q ss_pred CCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEe
Q 043910 103 CKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLG 182 (353)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 182 (353)
++|+.+.++.+.. .....+...+.++.+.++++..... . .+..+++|+.|++++|.++..+ .+..+++|++|+
T Consensus 107 ~~L~~l~l~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~ 179 (227)
T d1h6ua2 107 QSIKTLDLTSTQI----TDVTPLAGLSNLQVLYLDLNQITNI-S-PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLK 179 (227)
T ss_dssp TTCCEEECTTSCC----CCCGGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred ccccccccccccc----cccchhccccchhhhhchhhhhchh-h-hhccccccccccccccccccch-hhcccccceecc
Confidence 9999999998743 2244567788999999988654432 2 3677899999999999988664 478899999999
Q ss_pred ccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeC
Q 043910 183 LRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRK 232 (353)
Q Consensus 183 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~ 232 (353)
+++| .++.++. +.++++|++|++++|+++.++. ++.+++|+.|++++
T Consensus 180 Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 180 ADDN-KISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp CCSS-CCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred cCCC-ccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence 9996 5677765 7899999999999999998875 88999999999974
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=4.4e-17 Score=134.36 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=94.9
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEE
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEM 158 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 158 (353)
+.+|+.|+++++.++.+. ++..+++|++|++++|. +++ .+.++.+++|++|++++|. ++.++ .+..+++|+.|
T Consensus 45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~-i~~---l~~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTD---IKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSL 117 (210)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCC---CGGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEE
T ss_pred hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc-ccC---ccccccCcccccccccccc-ccccc-ccccccccccc
Confidence 445556666665555543 24455666666666552 222 2334556666666666643 33444 35556666666
Q ss_pred EccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCccc
Q 043910 159 ILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKI 238 (353)
Q Consensus 159 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l 238 (353)
++++|.+..++ .+..+++++.+++++|. +...+ .+..+++|+.+++++|+++.++. +..+++|++|++++|.++.+
T Consensus 118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l 193 (210)
T d1h6ta2 118 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (210)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred ccccccccccc-ccccccccccccccccc-ccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCC
Confidence 66666655543 35566666666666643 33332 24556666777777666665543 56666777777777766665
Q ss_pred chhHhhccCCceecccc
Q 043910 239 PTNVIHLSRLHSFCLSY 255 (353)
Q Consensus 239 ~~~l~~l~~L~~L~l~~ 255 (353)
+ .+.++++|++|++++
T Consensus 194 ~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 194 R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp G-GGTTCTTCSEEEEEE
T ss_pred h-hhcCCCCCCEEEccC
Confidence 5 356666677666653
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.71 E-value=1.4e-15 Score=134.78 Aligned_cols=233 Identities=23% Similarity=0.281 Sum_probs=126.5
Q ss_pred CCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEE
Q 043910 29 RKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQI 108 (353)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L 108 (353)
.++++|+++++.++. . |... +.|++|++++|+++.+|.. +.+|+.|++++|+++.++.. .+.|++|
T Consensus 38 ~~l~~LdLs~~~L~~-l------p~~~--~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L 103 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS-L------PELP--PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYL 103 (353)
T ss_dssp HTCSEEECTTSCCSC-C------CSCC--TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEE
T ss_pred cCCCEEEeCCCCCCC-C------CCCC--CCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh---ccccccc
Confidence 467888888877642 2 2211 2378888888888877754 45788888888877766431 2467888
Q ss_pred ecCCCcCcCCCCCCccccCCccCcEEeecCCCCCccc------------------chhhhcCCCccEEEccCccCcccC-
Q 043910 109 ITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRL------------------PAEILSAGNMEEMILNGTAIEELP- 169 (353)
Q Consensus 109 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~------------------~~~~~~~~~L~~L~l~~~~i~~l~- 169 (353)
++++|. ++.+ +.++.+++|++|+++++...... ...+..++.++.+.+.++.+..++
T Consensus 104 ~L~~n~-l~~l---p~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~ 179 (353)
T d1jl5a_ 104 GVSNNQ-LEKL---PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD 179 (353)
T ss_dssp ECCSSC-CSSC---CCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred cccccc-cccc---cchhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccc
Confidence 887763 3333 34566778888887775432211 111334566777777766544322
Q ss_pred ------------------ccccCCCCCCEEeccCCCCCcccCcccc-----------------CCCCCCEEEeeCccCCc
Q 043910 170 ------------------SSIECLSRLLHLGLRDCKRLKSLPKGLC-----------------KLKSLKFLILNGCGITQ 214 (353)
Q Consensus 170 ------------------~~~~~l~~L~~L~l~~~~~~~~l~~~~~-----------------~l~~L~~L~l~~~~i~~ 214 (353)
+....++.|+.+++++|.. ..++.... ....+...++..+.+..
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (353)
T d1jl5a_ 180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258 (353)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 1234456777777766432 22221110 01122222222221111
Q ss_pred c-----------------CcccCCCCCCcEEEeeCCCCcccchhHhhccCCceeccccccccccCCCCCCCcceeecCCC
Q 043910 215 L-----------------PENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQSLPKLPCNLKELDADHC 277 (353)
Q Consensus 215 ~-----------------~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 277 (353)
+ +.....+++|++|++++|.+..+|. .+++|+.|++++| .++.+|+.+++|++|++++|
T Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N 334 (353)
T d1jl5a_ 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFN-HLAEVPELPQNLKQLHVEYN 334 (353)
T ss_dssp ESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred cccccchhcccccccCccccccccCCCCCEEECCCCccCcccc---ccCCCCEEECCCC-cCCccccccCCCCEEECcCC
Confidence 0 0111223456666666666666554 2455666666654 35566666666666666666
Q ss_pred cCccccCc
Q 043910 278 AALESLSD 285 (353)
Q Consensus 278 ~~l~~~~~ 285 (353)
+ ++.+|.
T Consensus 335 ~-L~~lp~ 341 (353)
T d1jl5a_ 335 P-LREFPD 341 (353)
T ss_dssp C-CSSCCC
T ss_pred c-CCCCCc
Confidence 4 666654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=1.3e-16 Score=130.26 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=94.6
Q ss_pred CCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccE
Q 043910 78 HPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEE 157 (353)
Q Consensus 78 ~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 157 (353)
.+++++.|+++++.++.+. ++..+++|++|++++| .++. ...++.+++|++|++++|.. ..++ .+..+++|+.
T Consensus 38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N-~l~~---~~~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~ 110 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTD---ITPLKNLTKLVDILMNNNQI-ADIT-PLANLTNLTG 110 (199)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCC---CGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSE
T ss_pred HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccc-cccC---cccccCCccccccccccccc-cccc-cccccccccc
Confidence 3455666666666665542 3455666666666655 2332 22355666666666666432 2333 2556666666
Q ss_pred EEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcc
Q 043910 158 MILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEK 237 (353)
Q Consensus 158 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~ 237 (353)
|+++++.+..++ .+..+++|+++++++|. +..++ .+..+++|+.|++.+|.++.++. ++++++|++|++++|+++.
T Consensus 111 L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 111 LTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD 186 (199)
T ss_dssp EECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred cccccccccccc-ccchhhhhHHhhhhhhh-hcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCC
Confidence 666666555443 35566677777776643 44443 35666777777777776666553 6667777777777777666
Q ss_pred cchhHhhccCCcee
Q 043910 238 IPTNVIHLSRLHSF 251 (353)
Q Consensus 238 l~~~l~~l~~L~~L 251 (353)
++. +.++++|+.|
T Consensus 187 i~~-l~~L~~L~~L 199 (199)
T d2omxa2 187 ISV-LAKLTNLESL 199 (199)
T ss_dssp CGG-GGGCTTCSEE
T ss_pred Ccc-ccCCCCCCcC
Confidence 543 5566666554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=2.2e-16 Score=128.99 Aligned_cols=158 Identities=17% Similarity=0.272 Sum_probs=123.1
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+++|+++++.++.++.+..+++|++|++++|+++.+++ +..+++|+.|++++|.. ...+.+..++.|+.|++++|
T Consensus 42 l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~----~~~~~l~~l~~L~~L~l~~~ 116 (199)
T d2omxa2 42 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI----ADITPLANLTNLTGLTLFNN 116 (199)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC----CCCGGGTTCTTCSEEECCSS
T ss_pred CCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCccccccccccccc----cccccccccccccccccccc
Confidence 77888888888887777778889999999988887654 67788899999888742 22345778889999999886
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.... .+ .+..+++|+.|++++|.+..++ .+..+++|++|++.+| .++.++. ++++++|+.|++++|+++.++. +
T Consensus 117 ~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~-l 190 (199)
T d2omxa2 117 QITD-ID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSN-QVTDLKP-LANLTTLERLDISSNKVSDISV-L 190 (199)
T ss_dssp CCCC-CG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred cccc-cc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccc-cccCCcc-ccCCCCCCEEECCCCCCCCCcc-c
Confidence 5543 22 3677889999999999888765 5778889999999885 4555653 7888999999999999888764 6
Q ss_pred CCCCCCcEE
Q 043910 220 GQLFSLEEF 228 (353)
Q Consensus 220 ~~l~~L~~L 228 (353)
+.+++|++|
T Consensus 191 ~~L~~L~~L 199 (199)
T d2omxa2 191 AKLTNLESL 199 (199)
T ss_dssp GGCTTCSEE
T ss_pred cCCCCCCcC
Confidence 778888775
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=2.8e-16 Score=129.42 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=124.4
Q ss_pred cceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 60 IRYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+++++++++.++.++.+..+++|++|++++|.++.++. ...+++|+.|++++|. +++ .+.+..+++|+.|++++|
T Consensus 48 L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~-i~~---l~~l~~l~~L~~L~l~~~ 122 (210)
T d1h6ta2 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKD---LSSLKDLKKLKSLSLEHN 122 (210)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCC---GGGGTTCTTCCEEECTTS
T ss_pred ccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc-cccCcccccccccccc-ccc---cccccccccccccccccc
Confidence 77888888888777776678888888888888887653 5667888888888763 333 345777888888888886
Q ss_pred CCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCccc
Q 043910 140 SQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENL 219 (353)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~ 219 (353)
.. ..++ .+..+++++.+++++|.++..+ .+..+++|+++++++|. ++.+++ +.++++|+.|++++|.++.++. +
T Consensus 123 ~~-~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~-l 196 (210)
T d1h6ta2 123 GI-SDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-L 196 (210)
T ss_dssp CC-CCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred cc-cccc-cccccccccccccccccccccc-ccccccccccccccccc-cccccc-ccCCCCCCEEECCCCCCCCChh-h
Confidence 54 3333 4677888899999888887654 46678889999998864 555554 7788999999999998888764 8
Q ss_pred CCCCCCcEEEeeC
Q 043910 220 GQLFSLEEFCLRK 232 (353)
Q Consensus 220 ~~l~~L~~L~l~~ 232 (353)
..+++|++|++++
T Consensus 197 ~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 197 AGLKNLDVLELFS 209 (210)
T ss_dssp TTCTTCSEEEEEE
T ss_pred cCCCCCCEEEccC
Confidence 8889999999875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.70 E-value=3.6e-15 Score=132.08 Aligned_cols=244 Identities=18% Similarity=0.183 Sum_probs=160.2
Q ss_pred EEeCCCccccccCHHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCCCCCCCCceEEEcc
Q 043910 9 CLDMSKVEEIHLYSDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPSITHPAKLVLLEVP 88 (353)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~L~ 88 (353)
.+|+++.....++. ..++|++|++++|.++. . +..+ ..|+.|++.++.++.++.. .+.|++|+++
T Consensus 42 ~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~-l------p~~~--~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~ 106 (353)
T d1jl5a_ 42 ELELNNLGLSSLPE----LPPHLESLVASCNSLTE-L------PELP--QSLKSLLVDNNNLKALSDL--PPLLEYLGVS 106 (353)
T ss_dssp EEECTTSCCSCCCS----CCTTCSEEECCSSCCSS-C------CCCC--TTCCEEECCSSCCSCCCSC--CTTCCEEECC
T ss_pred EEEeCCCCCCCCCC----CCCCCCEEECCCCCCcc-c------ccch--hhhhhhhhhhcccchhhhh--cccccccccc
Confidence 45677665555542 35789999999998852 2 2221 2388888888888877654 3568888888
Q ss_pred CCCccccCCCCcCCCCccEEecCCCcCcCCC----------------CCCccccCCccCcEEeecCCCCCcc--------
Q 043910 89 HSNIQQLGDGGQHHCKLSQIITAARNFVTKT----------------PNPSFIRSLNKLTILNLSGCSQLKR-------- 144 (353)
Q Consensus 89 ~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~----------------~~~~~~~~l~~L~~L~l~~~~~~~~-------- 144 (353)
+|.++.++. ...+++|+.+++.++...... .....+..++.++.+.++++.....
T Consensus 107 ~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~ 185 (353)
T d1jl5a_ 107 NNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE 185 (353)
T ss_dssp SSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred ccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccc
Confidence 888887764 466788888888776432110 1112455667778887776543211
Q ss_pred ----------cchhhhcCCCccEEEccCccCcccCcccc-----------------CCCCCCEEeccCCCC--Ccc----
Q 043910 145 ----------LPAEILSAGNMEEMILNGTAIEELPSSIE-----------------CLSRLLHLGLRDCKR--LKS---- 191 (353)
Q Consensus 145 ----------~~~~~~~~~~L~~L~l~~~~i~~l~~~~~-----------------~l~~L~~L~l~~~~~--~~~---- 191 (353)
.......++.++.+++++|....++.... ....+...++..+.. +..
T Consensus 186 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~ 265 (353)
T d1jl5a_ 186 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265 (353)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 01123456788888888876554432211 112333333332111 111
Q ss_pred ----------cCccccCCCCCCEEEeeCccCCccCcccCCCCCCcEEEeeCCCCcccchhHhhccCCceecccccccccc
Q 043910 192 ----------LPKGLCKLKSLKFLILNGCGITQLPENLGQLFSLEEFCLRKTKFEKIPTNVIHLSRLHSFCLSYCERLQS 261 (353)
Q Consensus 192 ----------l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~ 261 (353)
++.....+++|++|++++|.++.+|.. +++|+.|++++|+++.+|.. +++|++|++++|+ ++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~ 338 (353)
T d1jl5a_ 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LRE 338 (353)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSS
T ss_pred hcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCc-CCC
Confidence 111123467899999999999998864 57899999999999988863 5689999999986 889
Q ss_pred CCCCCCCcceeecC
Q 043910 262 LPKLPCNLKELDAD 275 (353)
Q Consensus 262 l~~~~~~L~~L~l~ 275 (353)
+|..+.+|+.|.+.
T Consensus 339 lp~~~~~L~~L~~~ 352 (353)
T d1jl5a_ 339 FPDIPESVEDLRMN 352 (353)
T ss_dssp CCCCCTTCCEEECC
T ss_pred CCccccccCeeECc
Confidence 99988899988775
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.8e-15 Score=126.13 Aligned_cols=220 Identities=20% Similarity=0.258 Sum_probs=130.4
Q ss_pred ceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCC-CcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCC
Q 043910 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDG-GQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGC 139 (353)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 139 (353)
+.++.++..++.+|... .+++++|++++|.|+.++.. +..+++|++|++++|.....++ ...+..++.++++.+..+
T Consensus 11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~-~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp SEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEEC-SSSEESCTTCCEEEEECC
T ss_pred CEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceee-cccccccccccccccccc
Confidence 34555555666666432 24677777777777776654 4557777777777765433222 345667777777777654
Q ss_pred CCCccc-chhhhcCCCccEEEccCccCcccCc--cccCCCCCCEEeccCCCCCcccC-ccccCC-CCCCEEEeeCccCCc
Q 043910 140 SQLKRL-PAEILSAGNMEEMILNGTAIEELPS--SIECLSRLLHLGLRDCKRLKSLP-KGLCKL-KSLKFLILNGCGITQ 214 (353)
Q Consensus 140 ~~~~~~-~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l-~~L~~L~l~~~~i~~ 214 (353)
+.+... +..+..+++|+.++++++.++..+. .+..+..+..+...+ ..+..++ ..+..+ ..++.+++.+|+++.
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQE 167 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred ccccccccccccccccccccccchhhhcccccccccccccccccccccc-cccccccccccccccccceeeecccccccc
Confidence 444433 3446677778888887777765443 122233333333333 4444444 234443 367777777777777
Q ss_pred cCcccCCCCCCcEEE-eeCCCCcccch-hHhhccCCceeccccccccccCCC-CCCCcceeecCCCcCccccC
Q 043910 215 LPENLGQLFSLEEFC-LRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQSLPK-LPCNLKELDADHCAALESLS 284 (353)
Q Consensus 215 ~~~~~~~l~~L~~L~-l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~l~~~~ 284 (353)
++.......++.++. +++|.++.+|. .+.++++|++|++++|+ ++.+|. .+.++..|..-++..++.+|
T Consensus 168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~lp 239 (242)
T d1xwdc1 168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP 239 (242)
T ss_dssp ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCSC
T ss_pred cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCCCcCC
Confidence 666555556665553 46666777765 35667788888887754 566654 34555555544444555544
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.3e-15 Score=123.91 Aligned_cols=218 Identities=17% Similarity=0.168 Sum_probs=150.8
Q ss_pred cEEEeeeCCCCCCccceeecCCCCCCCccceEeecccCCCCCCC--CCCCCCceEEEccCCCccc-cCC-CCcCCCCccE
Q 043910 32 RFLKFYNSSINGENKCKVSNIQDPVFPEIRYLFWHGYPLKSLPS--ITHPAKLVLLEVPHSNIQQ-LGD-GGQHHCKLSQ 107 (353)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~L~~~~i~~-l~~-~~~~~~~L~~ 107 (353)
+.++.++..++. .|+.+. ..+++|++++|.++.++. +.++++|++|++++|.+.. ++. .+..++++++
T Consensus 11 ~~i~c~~~~l~~-------iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~ 82 (242)
T d1xwdc1 11 RVFLCQESKVTE-------IPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 82 (242)
T ss_dssp SEEEEESCSCSS-------CCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred CEEEEeCCCCCC-------cCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccc
Confidence 567777665532 222221 238999999999988875 3478999999999998865 333 3456889999
Q ss_pred EecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccch--hhhcCCCccEEEccCccCcccCc-cccCC-CCCCEEec
Q 043910 108 IITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPA--EILSAGNMEEMILNGTAIEELPS-SIECL-SRLLHLGL 183 (353)
Q Consensus 108 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~l~~-~~~~l-~~L~~L~l 183 (353)
+.+..++.++... ...+..+++|+++++++|... ..+. .+..+..++.+...++.+..++. .+..+ ..++.+++
T Consensus 83 l~~~~~n~l~~~~-~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l 160 (242)
T d1xwdc1 83 IRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 160 (242)
T ss_dssp EEEECCTTCCEEC-TTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred ccccccccccccc-cccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeec
Confidence 9988877766554 356888999999999997543 3332 23345566666667777776654 34444 47888999
Q ss_pred cCCCCCcccCccccCCCCCCEEE-eeCccCCccCcc-cCCCCCCcEEEeeCCCCcccch-hHhhccCCceeccccccccc
Q 043910 184 RDCKRLKSLPKGLCKLKSLKFLI-LNGCGITQLPEN-LGQLFSLEEFCLRKTKFEKIPT-NVIHLSRLHSFCLSYCERLQ 260 (353)
Q Consensus 184 ~~~~~~~~l~~~~~~l~~L~~L~-l~~~~i~~~~~~-~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~ 260 (353)
.+ +.++.++....+..+++.+. +.+|.++.+|.. +.++++|+.|++++|.++.+|. .+.+++.|+.+++.+ ++
T Consensus 161 ~~-n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~---l~ 236 (242)
T d1xwdc1 161 NK-NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LK 236 (242)
T ss_dssp CS-SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES---SS
T ss_pred cc-ccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC---CC
Confidence 87 45666766555666666664 566788888764 6889999999999999998876 355666666666543 44
Q ss_pred cCC
Q 043910 261 SLP 263 (353)
Q Consensus 261 ~l~ 263 (353)
.+|
T Consensus 237 ~lp 239 (242)
T d1xwdc1 237 KLP 239 (242)
T ss_dssp CSC
T ss_pred cCC
Confidence 544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=8.7e-16 Score=132.47 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=115.8
Q ss_pred CCccCcEEeecCCCCCcc-cchhhhcCCCccEEEccCccCc-ccCccccCCCCCCEEeccCCCCCcc--cCccccCCCCC
Q 043910 127 SLNKLTILNLSGCSQLKR-LPAEILSAGNMEEMILNGTAIE-ELPSSIECLSRLLHLGLRDCKRLKS--LPKGLCKLKSL 202 (353)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L 202 (353)
...+|++|++++|..... +...+..+++|++|++++|.++ ..+..+..+++|++|++++|..++. +......+++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 445777777777654433 2333556777888888877766 4445566777788888877766653 22233467778
Q ss_pred CEEEeeCcc-CC--ccCcccC-CCCCCcEEEeeCCC--Cc--ccchhHhhccCCceecccccccccc--CCC--CCCCcc
Q 043910 203 KFLILNGCG-IT--QLPENLG-QLFSLEEFCLRKTK--FE--KIPTNVIHLSRLHSFCLSYCERLQS--LPK--LPCNLK 270 (353)
Q Consensus 203 ~~L~l~~~~-i~--~~~~~~~-~l~~L~~L~l~~~~--l~--~l~~~l~~l~~L~~L~l~~~~~l~~--l~~--~~~~L~ 270 (353)
++|++++|. ++ .+...+. ..+.|+.|+++++. ++ .+...+.++++|++|++++|..++. +.. .+++|+
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~ 203 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence 888887763 43 2222222 23578888887653 33 3444456778888888888766542 111 246788
Q ss_pred eeecCCCcCccccCccccccccccccEEEecCCccCchHHHHhH
Q 043910 271 ELDADHCAALESLSDLFSISYDYYIRCFELSTNYKLDRNELRSI 314 (353)
Q Consensus 271 ~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~ 314 (353)
+|++++|..+++...... ..+++|+.|++.+| +.+.....+
T Consensus 204 ~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~--~~d~~l~~l 244 (284)
T d2astb2 204 HLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI--VPDGTLQLL 244 (284)
T ss_dssp EEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS--SCTTCHHHH
T ss_pred EEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC--CCHHHHHHH
Confidence 888888887776654433 34677888888888 455444443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.9e-16 Score=134.71 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=109.6
Q ss_pred CCCCCCceEEEccCCCccc--cCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCccc--chhhhc
Q 043910 76 ITHPAKLVLLEVPHSNIQQ--LGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRL--PAEILS 151 (353)
Q Consensus 76 ~~~~~~L~~L~L~~~~i~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~ 151 (353)
.....+|++||++++.+.. +...+..+++|++|++.+|. +++. ....++.+++|++|++++|..+++. ......
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~ 119 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcH-HHHHHhcCCCCcCccccccccccccccchhhHH
Confidence 3355678888888877643 33345567888888888774 2211 1235667778888888887665532 222345
Q ss_pred CCCccEEEccCc-cCc--ccCcccc-CCCCCCEEeccCCC-CCcc--cCccccCCCCCCEEEeeCcc-CC-ccCcccCCC
Q 043910 152 AGNMEEMILNGT-AIE--ELPSSIE-CLSRLLHLGLRDCK-RLKS--LPKGLCKLKSLKFLILNGCG-IT-QLPENLGQL 222 (353)
Q Consensus 152 ~~~L~~L~l~~~-~i~--~l~~~~~-~l~~L~~L~l~~~~-~~~~--l~~~~~~l~~L~~L~l~~~~-i~-~~~~~~~~l 222 (353)
+++|++|++++| .++ .+...+. ..++|+.|++++|. .++. +.....++++|++|++++|. ++ .....+..+
T Consensus 120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~ 199 (284)
T d2astb2 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199 (284)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence 778888888776 444 2222233 24677888887653 2222 22233467778888887763 44 344456667
Q ss_pred CCCcEEEeeCC-CCc-ccchhHhhccCCceeccccc
Q 043910 223 FSLEEFCLRKT-KFE-KIPTNVIHLSRLHSFCLSYC 256 (353)
Q Consensus 223 ~~L~~L~l~~~-~l~-~l~~~l~~l~~L~~L~l~~~ 256 (353)
++|++|++++| .++ .....++++++|+.|++++|
T Consensus 200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 77888888775 344 33344666777777777776
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.9e-14 Score=111.91 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=82.0
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCc-cccCCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPK-GLCKLKSL 202 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L 202 (353)
.+.++.++++|++++| .++.++..+..+++|+.|++++|.++.++ .+..+++|++|++++|. ++.++. .+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCcccccccccc
Confidence 3445566777777774 34445544456677777777777777663 46667777777777744 455543 34567777
Q ss_pred CEEEeeCccCCccCc--ccCCCCCCcEEEeeCCCCcccch----hHhhccCCceecc
Q 043910 203 KFLILNGCGITQLPE--NLGQLFSLEEFCLRKTKFEKIPT----NVIHLSRLHSFCL 253 (353)
Q Consensus 203 ~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~l~~l~~----~l~~l~~L~~L~l 253 (353)
+.|++++|.++.++. .+..+++|++|++++|++...+. .+..+++|+.||-
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 777777777765543 45667777777777777765543 4566777777763
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.51 E-value=2.3e-14 Score=116.01 Aligned_cols=63 Identities=27% Similarity=0.307 Sum_probs=28.7
Q ss_pred cCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCCccCc-ccCCCCCCcEEEeeCCCCc
Q 043910 173 ECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGITQLPE-NLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 173 ~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~l~ 236 (353)
..+++|++|++++| .+..++ ..|.++++|++|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 75 ~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 75 EGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccccceeeeccc-cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 33444444444442 222222 234444555555555555544432 2445555555555555544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=1.7e-13 Score=102.34 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=55.1
Q ss_pred cEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCcc
Q 043910 132 TILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCG 211 (353)
Q Consensus 132 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 211 (353)
|+|++++|+. +.++. +..+++|++|++++|.++.+|+.+..+++|++|++++| .++.+|. +..+++|+.|++++|+
T Consensus 1 R~L~Ls~n~l-~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCC-CCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCc-cccccccCeEECCCCc
Confidence 3455555332 33332 45555666666666666666555555666666666653 3444442 5556666666666666
Q ss_pred CCccC--cccCCCCCCcEEEeeCCCCc
Q 043910 212 ITQLP--ENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 212 i~~~~--~~~~~l~~L~~L~l~~~~l~ 236 (353)
++.++ ..+..+++|+.|++++|++.
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 55443 23455556666666666554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.1e-14 Score=111.03 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=14.8
Q ss_pred CCCceEEEccCCCccccCCCCcCCCCccEEecCCC
Q 043910 79 PAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAAR 113 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~ 113 (353)
+.++++|+|++|+|+.++.....+++|+.|++++|
T Consensus 17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N 51 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN 51 (162)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS
T ss_pred cCcCcEEECCCCCCCccCccccccccCCEEECCCC
Confidence 33444444444444444332233344444444443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=4.7e-13 Score=99.88 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=62.4
Q ss_pred ceEeecccCCCCCCCCCCCCCceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCC
Q 043910 61 RYLFWHGYPLKSLPSITHPAKLVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCS 140 (353)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 140 (353)
|+|++++|.++.++.+..+++|++|++++|.++.++..+..+++|+.|++++|. ++. .+.++.+++|++|++++|.
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~---l~~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LEN---VDGVANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCC---CGGGTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccc---cCccccccccCeEECCCCc
Confidence 456677777776666666677777777777777666556666777777777652 222 3345666666666666643
Q ss_pred CCcccc--hhhhcCCCccEEEccCccCcc
Q 043910 141 QLKRLP--AEILSAGNMEEMILNGTAIEE 167 (353)
Q Consensus 141 ~~~~~~--~~~~~~~~L~~L~l~~~~i~~ 167 (353)
. ..++ ..+..+++|+.|++++|.++.
T Consensus 77 i-~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 77 L-QQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp C-CSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred c-CCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 3 2222 234556666666666666553
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.41 E-value=1.4e-12 Score=105.28 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=102.3
Q ss_pred ceEEEccCCCccccCCCCcCCCCccEEecCCCcCcCCCCCCccccCCccCcEEeecCCCCCcccchhhhcCCCccEEEcc
Q 043910 82 LVLLEVPHSNIQQLGDGGQHHCKLSQIITAARNFVTKTPNPSFIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILN 161 (353)
Q Consensus 82 L~~L~L~~~~i~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 161 (353)
.+.++.++++++.+|..+ .+++++|+++++. ++.......|..+++|++|++++|......+..+..+++|++|+++
T Consensus 10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 357888999999888764 3788999999875 3333334577889999999999977776667778889999999999
Q ss_pred CccCcccCc-cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCEEEeeCccCC
Q 043910 162 GTAIEELPS-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKFLILNGCGIT 213 (353)
Q Consensus 162 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~ 213 (353)
+|+++.+++ +|.++++|++|++++| .++.++ ..|..+++|+++++++|.+.
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccc
Confidence 999998865 5788999999999985 466665 46788999999999998775
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.30 E-value=8.4e-14 Score=123.22 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=131.0
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCCCc-cceEeecccCCCCCCC------------CCCCCCceEEEcc
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVFPE-IRYLFWHGYPLKSLPS------------ITHPAKLVLLEVP 88 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~l~~------------~~~~~~L~~L~L~ 88 (353)
..++.....|++|++++|.+..... ..+...+...+ |+.++++++....... +...++|+.|+++
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~--~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHH--HHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 4567789999999999987743221 11222333333 8888888776443221 2245778888888
Q ss_pred CCCcccc-----CCCCcCCCCccEEecCCCcCcCCCCC------C------ccccCCccCcEEeecCCCCCcc----cch
Q 043910 89 HSNIQQL-----GDGGQHHCKLSQIITAARNFVTKTPN------P------SFIRSLNKLTILNLSGCSQLKR----LPA 147 (353)
Q Consensus 89 ~~~i~~l-----~~~~~~~~~L~~L~l~~~~~l~~~~~------~------~~~~~l~~L~~L~l~~~~~~~~----~~~ 147 (353)
+|.+... ...+...++|+.|++++|.. +.... . ......+.|+.+.++++..... +..
T Consensus 102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 180 (344)
T d2ca6a1 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180 (344)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred ccccccccccchhhhhcccccchheecccccc-cccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence 7776542 22233567777888777642 10000 0 0112445677777776543221 223
Q ss_pred hhhcCCCccEEEccCccCcc------cCccccCCCCCCEEeccCCCCCc----ccCccccCCCCCCEEEeeCccCCc---
Q 043910 148 EILSAGNMEEMILNGTAIEE------LPSSIECLSRLLHLGLRDCKRLK----SLPKGLCKLKSLKFLILNGCGITQ--- 214 (353)
Q Consensus 148 ~~~~~~~L~~L~l~~~~i~~------l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~i~~--- 214 (353)
.+...+.|+.|++++|.++. +...+..+++|++|++++|.... .+...+..+++|++|++++|.++.
T Consensus 181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~ 260 (344)
T d2ca6a1 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260 (344)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence 34456677777777777652 22345566777777777654211 123345567777777777777652
Q ss_pred --cCcccC--CCCCCcEEEeeCCCCcc-----cchhHh-hccCCceecccccc
Q 043910 215 --LPENLG--QLFSLEEFCLRKTKFEK-----IPTNVI-HLSRLHSFCLSYCE 257 (353)
Q Consensus 215 --~~~~~~--~l~~L~~L~l~~~~l~~-----l~~~l~-~l~~L~~L~l~~~~ 257 (353)
+...+. ....|++|++++|.+.. +...+. +++.|++|++++|.
T Consensus 261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 222222 23467777777777651 223332 45667777776653
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=6.9e-13 Score=121.17 Aligned_cols=307 Identities=16% Similarity=0.148 Sum_probs=176.8
Q ss_pred EEEeCCCccccccC-HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCC-CCccceEeecccCCCC-----CCC-CC-C
Q 043910 8 ICLDMSKVEEIHLY-SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPV-FPEIRYLFWHGYPLKS-----LPS-IT-H 78 (353)
Q Consensus 8 i~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~-----l~~-~~-~ 78 (353)
-.+|++.....+.. .+.+..++++|+|++++|.++..... .....+. ...|++|++++|+++. +.. .. .
T Consensus 5 ~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~--~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK--DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH--HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHH--HHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 34556655544433 33456799999999999987532110 1111222 3349999999998752 111 11 2
Q ss_pred CCCceEEEccCCCcccc-----CCCCcCCCCccEEecCCCcCcC-----------CC-----------CCC---------
Q 043910 79 PAKLVLLEVPHSNIQQL-----GDGGQHHCKLSQIITAARNFVT-----------KT-----------PNP--------- 122 (353)
Q Consensus 79 ~~~L~~L~L~~~~i~~l-----~~~~~~~~~L~~L~l~~~~~l~-----------~~-----------~~~--------- 122 (353)
..+|+.|++++|.++.. ...+..+++|++|++++|..-. .. ...
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35799999999998643 2345678999999998874210 00 000
Q ss_pred ccccCCccCcEEeecCCCCCcc---------------------------------cchhhhcCCCccEEEccCccCcc--
Q 043910 123 SFIRSLNKLTILNLSGCSQLKR---------------------------------LPAEILSAGNMEEMILNGTAIEE-- 167 (353)
Q Consensus 123 ~~~~~l~~L~~L~l~~~~~~~~---------------------------------~~~~~~~~~~L~~L~l~~~~i~~-- 167 (353)
..+.....++.+.++++..... ....+...+.++.+.+.++.+..
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 0122334555555555322110 00011234556666666665431
Q ss_pred ----cCccccCCCCCCEEeccCCCCCcc----cCccccCCCCCCEEEeeCccCCc-----cCcc-cCCCCCCcEEEeeCC
Q 043910 168 ----LPSSIECLSRLLHLGLRDCKRLKS----LPKGLCKLKSLKFLILNGCGITQ-----LPEN-LGQLFSLEEFCLRKT 233 (353)
Q Consensus 168 ----l~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~~-----~~~~-~~~l~~L~~L~l~~~ 233 (353)
..........++.+++++|..... ....+...+.++.+++++|.+.. +... ......|+.+++++|
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~ 322 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence 112233456777788877543322 11223456777888888877651 1111 123457888999888
Q ss_pred CCcc-----cchhHhhccCCceecccccccc----cc----CCCCCCCcceeecCCCcCccccCcccc---ccccccccE
Q 043910 234 KFEK-----IPTNVIHLSRLHSFCLSYCERL----QS----LPKLPCNLKELDADHCAALESLSDLFS---ISYDYYIRC 297 (353)
Q Consensus 234 ~l~~-----l~~~l~~l~~L~~L~l~~~~~l----~~----l~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~~~~l~~ 297 (353)
.+.. +...+...++|++|++++|..- .. +....+.|+.|++++| .+++.+.... ...+++|+.
T Consensus 323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~ 401 (460)
T d1z7xw1 323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRE 401 (460)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCE
T ss_pred chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCE
Confidence 8762 2223456678999999887521 11 2234567899999998 5766443222 234677889
Q ss_pred EEecCCccCchHHHHhHHHHH
Q 043910 298 FELSTNYKLDRNELRSILEDA 318 (353)
Q Consensus 298 l~~~~c~~l~~~~~~~~~~~~ 318 (353)
|+++++ .+++.....+.+..
T Consensus 402 L~Ls~N-~i~~~g~~~l~~~l 421 (460)
T d1z7xw1 402 LDLSNN-CLGDAGILQLVESV 421 (460)
T ss_dssp EECCSS-SCCHHHHHHHHHHH
T ss_pred EECCCC-cCCHHHHHHHHHHH
Confidence 999888 67776666665543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.23 E-value=2.2e-13 Score=110.52 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=46.8
Q ss_pred chhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCCEEEeeCccCCccCcccCCCCCC
Q 043910 146 PAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKFLILNGCGITQLPENLGQLFSL 225 (353)
Q Consensus 146 ~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L 225 (353)
+..+..+++|++|++++|.|+.++ .+..+++|++|++++| .++.++.....+++|+.|++++|.++.++. +..+++|
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L 117 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHHH-HHHHHHS
T ss_pred hhHHhcccccceeECcccCCCCcc-cccCCccccChhhccc-cccccccccccccccccccccccccccccc-ccccccc
Confidence 333444444444444444444443 2444444444444442 233333322233344444444444444322 3334444
Q ss_pred cEEEeeCCCCcccch--hHhhccCCceeccccc
Q 043910 226 EEFCLRKTKFEKIPT--NVIHLSRLHSFCLSYC 256 (353)
Q Consensus 226 ~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~ 256 (353)
+.|++++|.+..++. .+..+++|+.|++++|
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred cccccccchhccccccccccCCCccceeecCCC
Confidence 555555444443332 2344444444444444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=1.5e-13 Score=111.42 Aligned_cols=125 Identities=21% Similarity=0.246 Sum_probs=90.1
Q ss_pred cccCCccCcEEeecCCCCCcccchhhhcCCCccEEEccCccCcccCccccCCCCCCEEeccCCCCCcccCccccCCCCCC
Q 043910 124 FIRSLNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGTAIEELPSSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLK 203 (353)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 203 (353)
++..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++.....+++|++|++++| .++.++ .+..+++|+
T Consensus 43 sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~ 118 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHH-HHHHHHHSS
T ss_pred HHhcccccceeECcccC-CCCcc-cccCCccccChhhcccccccccccccccccccccccccc-cccccc-ccccccccc
Confidence 56677788888888754 44554 477788888888888888877765555677888888875 455554 366788888
Q ss_pred EEEeeCccCCccC--cccCCCCCCcEEEeeCCCCcccch-----------hHhhccCCceec
Q 043910 204 FLILNGCGITQLP--ENLGQLFSLEEFCLRKTKFEKIPT-----------NVIHLSRLHSFC 252 (353)
Q Consensus 204 ~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~l~~l~~-----------~l~~l~~L~~L~ 252 (353)
.|++++|.++.++ ..+..+++|+.|++++|++...+. .+..+|+|+.||
T Consensus 119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 8888888887665 357788889999998887652211 245677777776
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=6.8e-11 Score=91.62 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=79.7
Q ss_pred CccCcEEeecCCCCCcccchhhhcCCCccEEEccCc-cCcccCc-cccCCCCCCEEeccCCCCCcccC-ccccCCCCCCE
Q 043910 128 LNKLTILNLSGCSQLKRLPAEILSAGNMEEMILNGT-AIEELPS-SIECLSRLLHLGLRDCKRLKSLP-KGLCKLKSLKF 204 (353)
Q Consensus 128 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~ 204 (353)
+...+.++.++ +.....|..+..+++|++|+++++ .++.++. +|..+++|+.|++++| .++.++ ..|..+++|++
T Consensus 7 c~~~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 7 PHGSSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp CSSSSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCE
T ss_pred cCCCCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccc
Confidence 34455677776 445566766777888888888766 4787764 5778888888888885 456654 46788888888
Q ss_pred EEeeCccCCccCcccCCCCCCcEEEeeCCCCc
Q 043910 205 LILNGCGITQLPENLGQLFSLEEFCLRKTKFE 236 (353)
Q Consensus 205 L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~l~ 236 (353)
|++++|+++.+|.......+|+.|++++|++.
T Consensus 85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp EECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred eeccCCCCcccChhhhccccccccccCCCccc
Confidence 88888888888776655667888888888874
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=7.9e-12 Score=113.99 Aligned_cols=280 Identities=16% Similarity=0.136 Sum_probs=173.3
Q ss_pred HHHHhcCCCCcEEEeeeCCCCCCccceeecCCCCCC--CccceEeecccCCCCCC------CCCCCCCceEEEccCCCcc
Q 043910 22 SDTFTKMRKLRFLKFYNSSINGENKCKVSNIQDPVF--PEIRYLFWHGYPLKSLP------SITHPAKLVLLEVPHSNIQ 93 (353)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~------~~~~~~~L~~L~L~~~~i~ 93 (353)
..++..+++|++|++++|.++.... ......+.. ..|+.|++++|.++... .+...++|++|++++|.+.
T Consensus 48 ~~~L~~~~~L~~LdLs~N~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 48 SSALRVNPALAELNLRSNELGDVGV--HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHH--HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHhcCCCCCEEECcCCcCChHHH--HHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 3567789999999999998743211 112223322 34999999999986432 2346789999999999774
Q ss_pred ccC-----C-----------------------------CCcCCCCccEEecCCCcCcC----------------------
Q 043910 94 QLG-----D-----------------------------GGQHHCKLSQIITAARNFVT---------------------- 117 (353)
Q Consensus 94 ~l~-----~-----------------------------~~~~~~~L~~L~l~~~~~l~---------------------- 117 (353)
... . .....+.++.++++.+....
T Consensus 126 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 205 (460)
T d1z7xw1 126 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 205 (460)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred hhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 310 0 00123455555555443210
Q ss_pred ---CCCCC------ccccCCccCcEEeecCCCCCcc-----cchhhhcCCCccEEEccCccCcc-----cCccccCCCCC
Q 043910 118 ---KTPNP------SFIRSLNKLTILNLSGCSQLKR-----LPAEILSAGNMEEMILNGTAIEE-----LPSSIECLSRL 178 (353)
Q Consensus 118 ---~~~~~------~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L 178 (353)
..... ..+...+.++.+.+++|..... ..........++.+++++|.+.. ....+...+.+
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l 285 (460)
T d1z7xw1 206 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 285 (460)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred ccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccc
Confidence 00000 1234567788888887654221 12223346789999999998873 22345667899
Q ss_pred CEEeccCCCCCcc----cCcc-ccCCCCCCEEEeeCccCCc-----cCcccCCCCCCcEEEeeCCCCcc-----cchhHh
Q 043910 179 LHLGLRDCKRLKS----LPKG-LCKLKSLKFLILNGCGITQ-----LPENLGQLFSLEEFCLRKTKFEK-----IPTNVI 243 (353)
Q Consensus 179 ~~L~l~~~~~~~~----l~~~-~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~l~~-----l~~~l~ 243 (353)
+.+++++|..... +... ......|+.+++++|.++. +...+....+|++|++++|.+.. ++..+.
T Consensus 286 ~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~ 365 (460)
T d1z7xw1 286 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 365 (460)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh
Confidence 9999998653221 1111 2345689999999998762 23334556789999999999862 333333
Q ss_pred -hccCCceecccccccccc-----CCC---CCCCcceeecCCCcCccccCccccc----cccccccEEEecCCcc
Q 043910 244 -HLSRLHSFCLSYCERLQS-----LPK---LPCNLKELDADHCAALESLSDLFSI----SYDYYIRCFELSTNYK 305 (353)
Q Consensus 244 -~l~~L~~L~l~~~~~l~~-----l~~---~~~~L~~L~l~~c~~l~~~~~~~~~----~~~~~l~~l~~~~c~~ 305 (353)
..+.|++|++++|. ++. +.. ..++|++|+++++ .+++-+..... .....|+.+++.++..
T Consensus 366 ~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~ 438 (460)
T d1z7xw1 366 QPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438 (460)
T ss_dssp STTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred cccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence 35679999999985 432 222 2478999999987 56654333222 1234689999998744
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.6e-10 Score=87.42 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=41.4
Q ss_pred CCccCcEEeecCCCCCcccc-hhhhcCCCccEEEccCccCcccC-ccccCCCCCCEEeccCCCCCcccCccccCCCCCCE
Q 043910 127 SLNKLTILNLSGCSQLKRLP-AEILSAGNMEEMILNGTAIEELP-SSIECLSRLLHLGLRDCKRLKSLPKGLCKLKSLKF 204 (353)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 204 (353)
.+++|++|++++++.++.++ ..|.++++|+.|++++|+|+.++ .++..+++|++|++++| .++.+|.......+|+.
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~ 107 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQE 107 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCE
T ss_pred CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhhhccccccc
Confidence 34445555554433333333 23444555555555555555543 23455555555555552 34444443333334566
Q ss_pred EEeeCccC
Q 043910 205 LILNGCGI 212 (353)
Q Consensus 205 L~l~~~~i 212 (353)
|++++|.+
T Consensus 108 L~L~~Np~ 115 (156)
T d2ifga3 108 LVLSGNPL 115 (156)
T ss_dssp EECCSSCC
T ss_pred cccCCCcc
Confidence 66666544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.10 E-value=1.3e-10 Score=102.16 Aligned_cols=227 Identities=14% Similarity=0.049 Sum_probs=135.8
Q ss_pred CCCCceEEEccCCCccc-----cCCCCcCCCCccEEecCCCcCcCCCCC--------CccccCCccCcEEeecCCCCCcc
Q 043910 78 HPAKLVLLEVPHSNIQQ-----LGDGGQHHCKLSQIITAARNFVTKTPN--------PSFIRSLNKLTILNLSGCSQLKR 144 (353)
Q Consensus 78 ~~~~L~~L~L~~~~i~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~~~l~~L~~L~l~~~~~~~~ 144 (353)
....|+.|+|++|.+.. +.......++|+.++++++..-..... ...+..+++|++|++++|.....
T Consensus 29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 108 (344)
T d2ca6a1 29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 108 (344)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence 35667777777776632 333455667777777776532110000 01345667788888887654332
Q ss_pred ----cchhhhcCCCccEEEccCccCcc-----cCc---------cccCCCCCCEEeccCCCCCc----ccCccccCCCCC
Q 043910 145 ----LPAEILSAGNMEEMILNGTAIEE-----LPS---------SIECLSRLLHLGLRDCKRLK----SLPKGLCKLKSL 202 (353)
Q Consensus 145 ----~~~~~~~~~~L~~L~l~~~~i~~-----l~~---------~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L 202 (353)
+...+...++|+.|++++|.+.. +.. .....+.|+.++++++..-. .+...+...+.|
T Consensus 109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L 188 (344)
T d2ca6a1 109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188 (344)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence 33334466788888888876641 100 11345678888887754322 122334567788
Q ss_pred CEEEeeCccCCc------cCcccCCCCCCcEEEeeCCCCc-----ccchhHhhccCCceeccccccccc--------cCC
Q 043910 203 KFLILNGCGITQ------LPENLGQLFSLEEFCLRKTKFE-----KIPTNVIHLSRLHSFCLSYCERLQ--------SLP 263 (353)
Q Consensus 203 ~~L~l~~~~i~~------~~~~~~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~~l~--------~l~ 263 (353)
+.|++++|.+.. +...+..+++|+.|++++|.++ .+...+..++.|++|++++|..-. .+.
T Consensus 189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~ 268 (344)
T d2ca6a1 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 268 (344)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhh
Confidence 888888887762 2334566778888888888875 234456678888888888874211 111
Q ss_pred C-CCCCcceeecCCCcCccccCccccc----cccccccEEEecCCcc
Q 043910 264 K-LPCNLKELDADHCAALESLSDLFSI----SYDYYIRCFELSTNYK 305 (353)
Q Consensus 264 ~-~~~~L~~L~l~~c~~l~~~~~~~~~----~~~~~l~~l~~~~c~~ 305 (353)
. ....|++|+++++. +++-...... ...+.|+.++++++.-
T Consensus 269 ~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 269 KLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp TCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred hccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence 1 23578899998874 6553322222 1346788999988754
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.7e-07 Score=72.38 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=16.3
Q ss_pred cCCCccEEEccCccCcccC---ccccCCCCCCEEeccC
Q 043910 151 SAGNMEEMILNGTAIEELP---SSIECLSRLLHLGLRD 185 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~ 185 (353)
.+++|++|++++|+|+.++ ..+..+++|++|++++
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~ 100 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 100 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence 3455555555555555332 1233344444444444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.66 E-value=1.6e-05 Score=61.17 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=7.1
Q ss_pred CCCccEEEccCccCc
Q 043910 152 AGNMEEMILNGTAIE 166 (353)
Q Consensus 152 ~~~L~~L~l~~~~i~ 166 (353)
.++|+.|++++|.+.
T Consensus 43 n~~L~~L~Ls~n~l~ 57 (167)
T d1pgva_ 43 SKHIEKFSLANTAIS 57 (167)
T ss_dssp CSCCCEEECTTSCCB
T ss_pred CCccceeeccccccc
Confidence 344555555554443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=1.9e-06 Score=66.29 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=16.8
Q ss_pred hcCCCccEEEccCccCcccCc-cccCCCCCCEEeccCCC
Q 043910 150 LSAGNMEEMILNGTAIEELPS-SIECLSRLLHLGLRDCK 187 (353)
Q Consensus 150 ~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~ 187 (353)
..+++|+.|++++|.|+.++. ......+|+.+++++|.
T Consensus 88 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred hhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence 344555555555555554432 11122345555555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.64 E-value=2.1e-05 Score=60.53 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=62.5
Q ss_pred CCCccEEEccCc-cCc-----ccCccccCCCCCCEEeccCCCCCcc----cCccccCCCCCCEEEeeCccCC-----ccC
Q 043910 152 AGNMEEMILNGT-AIE-----ELPSSIECLSRLLHLGLRDCKRLKS----LPKGLCKLKSLKFLILNGCGIT-----QLP 216 (353)
Q Consensus 152 ~~~L~~L~l~~~-~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~-----~~~ 216 (353)
.++|++|+++++ .++ .+-..+...++|++|++++|..-.. +...+...+.|+.|++++|.+. .+.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 456666776653 344 1233456667888888888653221 2223455677888888888876 234
Q ss_pred cccCCCCCCcEEEeeCCCCcc--------cchhHhhccCCceecccc
Q 043910 217 ENLGQLFSLEEFCLRKTKFEK--------IPTNVIHLSRLHSFCLSY 255 (353)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~l~~--------l~~~l~~l~~L~~L~l~~ 255 (353)
..+...++|++|++++|.+.. +...+...+.|+.|+++.
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 140 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence 456677788888888775432 223334455555555543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.11 E-value=0.00015 Score=55.41 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=16.1
Q ss_pred cCCCccEEEccCccCcc-----cCccccCCCCCCEEeccCC
Q 043910 151 SAGNMEEMILNGTAIEE-----LPSSIECLSRLLHLGLRDC 186 (353)
Q Consensus 151 ~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~ 186 (353)
..++|++|++++|.++. +-..+...++++.+++++|
T Consensus 44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence 34455555555554431 1122333445555555543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.91 E-value=0.00033 Score=53.40 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=57.3
Q ss_pred cCCCccEEEccC-ccCc-----ccCccccCCCCCCEEeccCCCCCcc----cCccccCCCCCCEEEeeCccCC-----cc
Q 043910 151 SAGNMEEMILNG-TAIE-----ELPSSIECLSRLLHLGLRDCKRLKS----LPKGLCKLKSLKFLILNGCGIT-----QL 215 (353)
Q Consensus 151 ~~~~L~~L~l~~-~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~-----~~ 215 (353)
+.++|++|++++ +.++ .+-..+...++|++|++++|..-.. +...+...++++.+++.+|.+. .+
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 345666666665 2344 1233455667788888887643221 2223445667777777777664 23
Q ss_pred CcccCCCCCCcEEEee--CCCCc-----ccchhHhhccCCceecccc
Q 043910 216 PENLGQLFSLEEFCLR--KTKFE-----KIPTNVIHLSRLHSFCLSY 255 (353)
Q Consensus 216 ~~~~~~l~~L~~L~l~--~~~l~-----~l~~~l~~l~~L~~L~l~~ 255 (353)
...+...++|+.++++ +|.+. .+...+...+.|+.|+++.
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 3445556677765554 34443 2333444556666665544
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