Citrus Sinensis ID: 043923
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | 2.2.26 [Sep-21-2011] | |||||||
| Q9T065 | 469 | 1-aminocyclopropane-1-car | yes | no | 1.0 | 1.0 | 0.773 | 0.0 | |
| P37821 | 473 | 1-aminocyclopropane-1-car | N/A | no | 0.989 | 0.980 | 0.794 | 0.0 | |
| Q00257 | 475 | 1-aminocyclopropane-1-car | N/A | no | 0.980 | 0.968 | 0.790 | 0.0 | |
| Q42881 | 469 | 1-aminocyclopropane-1-car | N/A | no | 0.989 | 0.989 | 0.791 | 0.0 | |
| Q9M2Y8 | 470 | 1-aminocyclopropane-1-car | no | no | 1.0 | 0.997 | 0.782 | 0.0 | |
| Q37001 | 470 | 1-aminocyclopropane-1-car | no | no | 1.0 | 0.997 | 0.755 | 0.0 | |
| Q43309 | 474 | 1-aminocyclopropane-1-car | no | no | 1.0 | 0.989 | 0.734 | 0.0 | |
| Q10DK7 | 487 | 1-aminocyclopropane-1-car | yes | no | 0.976 | 0.940 | 0.675 | 0.0 | |
| A2XLL2 | 487 | 1-aminocyclopropane-1-car | N/A | no | 0.976 | 0.940 | 0.675 | 0.0 | |
| Q9S9U6 | 460 | 1-aminocyclopropane-1-car | no | no | 0.957 | 0.976 | 0.668 | 0.0 |
| >sp|Q9T065|1A18_ARATH 1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/469 (77%), Positives = 418/469 (89%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
MGLLS KA+CNTHGQDSSYF GW+EYEKNPYDE++NP GIIQMGLAENQLSFDL+ESWL
Sbjct: 1 MGLLSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAA F+R+GQSIFRELALFQDYHGLP+FK A+ +FMSE RGN+V+F+ +K+VLTAGA
Sbjct: 61 KNPDAANFQREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
T ANETLMFCLA+PG+AFLLPTPYYPGFDRDLKWRTG EIVPIQC S NGF+IT+ A+EE
Sbjct: 121 TPANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AY+ AQK +LKVKGVL+TNPSNPLGTT +R ELN L++ I+ K IHLISDEIYSGTVF++
Sbjct: 181 AYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTN 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGF+S+ME+LKDR ENT V++RVHIVYSLSKDLGLPGFRVG IYSNDD VV+AATKMSS
Sbjct: 241 PGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGL+SSQTQYLLSALLSDK FT+NY+ EN+ RLK RH+KLVSGLE AGI CLKSNAGLFC
Sbjct: 301 FGLISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL+SNTFEAE+ELWKKIVY+VKLNISPGSSCHC EPGWFRVCFAN+SE+TLK++
Sbjct: 361 WVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+ RLK FVD + T +QS HQ +KN R+ ++ WVFRLSF DR ER
Sbjct: 421 LDRLKRFVDGPSPTRRSQSEHQRLKNLRKMKVSNWVFRLSFHDREPEER 469
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|P37821|1A1C_MALDO 1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/467 (79%), Positives = 414/467 (88%), Gaps = 3/467 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS AT N+HGQDSSYFLGWQEYEKNPY EV N GIIQMGLAENQL FDLLESWL
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NP+AA FK++G+SIF ELALFQDYHGLPAFKKA+V+FM+EIRGNKVTFD + +VLTAGA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANET +FCLA+PGEA L+PTPYYPGFDRDLKWRTGVEIVPI CTS NGFQITETA+EE
Sbjct: 121 TSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++ + +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 241 PGFVSIMEILKDRNC-ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
P F+S+ME+LKDRNC EN++VW RVH+VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359
SFGLVSSQTQ+LLSA+LSDKK T+NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419
CWVDMRHLLRSNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 420 SMQRLKAFVDSITTTLHNQSNHQS--IKNSRRRSLTKWVFRLSFDDR 464
+MQRLKAFV QS + +SRR+SLTKWV RLSFDDR
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGGSQSSHLSHSRRQSLTKWVSRLSFDDR 467
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Malus domestica (taxid: 3750) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q00257|1A12_CUCMA 1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/463 (79%), Positives = 412/463 (88%), Gaps = 3/463 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS KATCN+HGQDSSYFLGW+ YE NP+ NP GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKMLSTKATCNSHGQDSSYFLGWEAYENNPFHHTSNPNGIIQMGLAENQLSFDLLESWLS 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAA FKRDG+SIFRELALFQDYHGLPAFKKALVEFM+EIRGNKV+F+ + IVLTAGA
Sbjct: 61 KNPDAASFKRDGKSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVSFEANNIVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAE G+AFLLPTPYYPGFDRDLKWRTGVEIVPI CTS NGFQIT++A+E+
Sbjct: 121 TSANETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITQSALEQ 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AY+ AQ R+L+VKGVLVTNPSNPLGTTM+R+ELNL+ + IT K IHLISDEIYSGTVF S
Sbjct: 181 AYKDAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVFGS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVS ME+LK+R+ E+ +VW RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS
Sbjct: 241 PGFVSAMEVLKERSSEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLSA+LSDKKFT +YISEN+KRLKQR + LVSGL+KAGI+CL SNAGLFC
Sbjct: 301 FGLVSSQTQYLLSAMLSDKKFTISYISENQKRLKQRQKMLVSGLQKAGINCLDSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL S+ FE+E+ELWKKIVY+V LNISPGSSCHCTEPGWFRVCFANMSE TLKL+
Sbjct: 361 WVDMRHLLESDKFESELELWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSESTLKLA 420
Query: 421 MQRLKAFVDSI-TTTLHNQSNHQS--IKNSRRRSLTKWVFRLS 460
++RLK+FV + +TT N NH + KN ++ TKWVFR S
Sbjct: 421 VRRLKSFVTELRSTTTSNHRNHDNKICKNIKKNIFTKWVFRQS 463
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita maxima (taxid: 3661) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q42881|1A13_SOLLC 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/465 (79%), Positives = 417/465 (89%), Gaps = 1/465 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KATCN+HGQDSSYFLGWQEYEKNPYDE+QNP GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKLLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAGFKR+G+SIFRELALFQDYHGLPAFK A+ +FMSEIRGN+V+FD++ +VLTAGA
Sbjct: 61 QNPDAAGFKRNGESIFRELALFQDYHGLPAFKNAMTKFMSEIRGNRVSFDSNNLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA G+AFLLPTPYYPGFDRDLKWRTG EIVPI C+S NGF+ITE+A+EE
Sbjct: 121 TSANETLMFCLANQGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFRITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AY A+KR+LKVKGVLVTNPSNPLGTT++RNEL LL+ I EK IHLISDEIYSGTVF+S
Sbjct: 181 AYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVS+ME+L ++N T+VW RVHIVYSLSKDLGLPGFR+GAIYSND+MVV+AATKMSS
Sbjct: 241 PGFVSVMEVLIEKNYMKTRVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLS +LSDKKFT+ YISEN+KRLK+RH LV GL+ AGI+CL+SNAGLFC
Sbjct: 301 FGLVSSQTQYLLSCMLSDKKFTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL SN F+AEM+LWKKIVYDV LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCTEPGWFRVCFANMSEDTLDLA 420
Query: 421 MQRLKAFVDSITTTLHNQSN-HQSIKNSRRRSLTKWVFRLSFDDR 464
M+R+K FV+S N N QS NS+++S +KWVFRLSF+DR
Sbjct: 421 MRRIKDFVESTAPNATNHQNQQQSNANSKKKSFSKWVFRLSFNDR 465
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9M2Y8|1A19_ARATH 1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/470 (78%), Positives = 417/470 (88%), Gaps = 1/470 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LS K T N HGQDSSYFLGW+EYEKNPYDE++NP GIIQMGLAENQL FDL+E+WL
Sbjct: 1 MKQLSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQLCFDLIETWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAG K+DGQSIF+ELALFQDYHGLP FKKAL EFM EIRGN+VTFD SKIVL AG+
Sbjct: 61 KNPDAAGLKKDGQSIFKELALFQDYHGLPEFKKALAEFMEEIRGNRVTFDPSKIVLAAGS 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAEPG+AFLLPTPYYPGFDRDLKWRTG EIVPI C+S NGFQITE+A+++
Sbjct: 121 TSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQ 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQK LKVKGVLVTNPSNPLGT ++R ELNLLV+ IT KNIHLISDEIYSGTVF
Sbjct: 181 AYQQAQKLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGF 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
FVS+M++LKD+N EN++V RVHIVYSLSKDLGLPGFRVGAIYSND+MVV+AATKMSS
Sbjct: 241 EQFVSVMDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLSALLSDKKFT Y+ EN+KRLK R +KLVSGLE AGI+CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL +NTFEAE+ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLA 420
Query: 421 MQRLKAFVDSITT-TLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
M+RLK +V+S + + ++S+H IK+ R+R+++ WVFR+S+ DRV ER
Sbjct: 421 MKRLKEYVESTDSRRVISKSSHDRIKSLRKRTVSNWVFRVSWTDRVPDER 470
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q37001|1A15_ARATH 1-aminocyclopropane-1-carboxylate synthase 5 OS=Arabidopsis thaliana GN=ACS5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/470 (75%), Positives = 414/470 (88%), Gaps = 1/470 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LS K T N HGQDSSYFLGW+EYEKNPYDE++NP G+IQMGLAENQL FDL+ESWL
Sbjct: 1 MKQLSTKVTSNGHGQDSSYFLGWEEYEKNPYDEIKNPNGMIQMGLAENQLCFDLIESWLT 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAA KR+GQSIFRELALFQDYHG+P FKKA+ EFM EIRGN+VTFD KIVL AG+
Sbjct: 61 KNPDAASLKRNGQSIFRELALFQDYHGMPEFKKAMAEFMEEIRGNRVTFDPKKIVLAAGS 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAEPG+AFLLPTPYYPGFDRDLKWRTG EIVPI C+S NGFQITE+A+++
Sbjct: 121 TSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQ 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQK LKVKGVLVTNPSNPLGT ++R ELNLLV+ IT KNIHLISDEIYSGT+F
Sbjct: 181 AYQQAQKLDLKVKGVLVTNPSNPLGTALTRRELNLLVDFITSKNIHLISDEIYSGTMFGF 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
F+S+M++LKD+ E+T+V RVH+VYSLSKDLGLPGFRVGAIYSND+M+V+AATKMSS
Sbjct: 241 EQFISVMDVLKDKKLEDTEVSKRVHVVYSLSKDLGLPGFRVGAIYSNDEMIVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLSALLSDKKFT Y+ EN+KRLK R R+LVSGLE AGI+CL+SNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTSQYLEENQKRLKSRQRRLVSGLESAGITCLRSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL +NTFEAE++LWKKIVY+VKLNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLDTNTFEAELDLWKKIVYNVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLA 420
Query: 421 MQRLKAFVDSITT-TLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
++RLK FV+S + ++S+H+ +K+ R+++++ WVFR+S+ DRV ER
Sbjct: 421 LKRLKTFVESTDCGRMISRSSHERLKSLRKKTVSNWVFRVSWTDRVPDER 470
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q43309|1A14_ARATH 1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/474 (73%), Positives = 402/474 (84%), Gaps = 5/474 (1%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LS KATCN+HGQ SSYFLGW+EYEKNPYD +NP GIIQMGLAENQL FDLLESWL
Sbjct: 1 MVQLSRKATCNSHGQVSSYFLGWEEYEKNPYDVTKNPQGIIQMGLAENQLCFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+N DAA FKRDGQS+FRELALFQDYHGL +FK A +FMSE RGN+V+FD++ +VLTAGA
Sbjct: 61 QNTDAACFKRDGQSVFRELALFQDYHGLSSFKNAFADFMSENRGNRVSFDSNNLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA+PG+AFLLPTPYYPGFDRDLKWRTGVEIVPIQ +S NGF+IT+ A+EE
Sbjct: 121 TSANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIQSSSTNGFRITKLALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE-KNIHLISDEIYSGTVFS 239
AY+ A+K L VKG+L+TNPSNPLGTT ++ ELN+L + IT+ KNIHL+SDEIYSGTVF+
Sbjct: 181 AYEQAKKLDLNVKGILITNPSNPLGTTTTQTELNILFDFITKNKNIHLVSDEIYSGTVFN 240
Query: 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
S F+S+MEILK+ ENT V NRVHIV SLSKDLGLPGFRVGAIYSND V++AATKMS
Sbjct: 241 SSEFISVMEILKNNQLENTDVLNRVHIVCSLSKDLGLPGFRVGAIYSNDKDVISAATKMS 300
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359
SFGLVSSQTQYLLS+LLSDKKFT+NY+ EN+KRLK R RKLV GLE GI CLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSSLLSDKKFTKNYLRENQKRLKNRQRKLVLGLEAIGIKCLKSNAGLF 360
Query: 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419
CWVDMR LLRS TFEAEM+LWKKIVY+VKLNISPGSSCHC EPGWFRVCFANM ++TLKL
Sbjct: 361 CWVDMRPLLRSKTFEAEMDLWKKIVYEVKLNISPGSSCHCEEPGWFRVCFANMIDETLKL 420
Query: 420 SMQRLKAFVDSITTTLHNQ-SNHQSIKNSRRRSL---TKWVFRLSFDDRVTGER 469
+++RLK VD ++ Q S + + SR++++ + WVFRLSF DR ER
Sbjct: 421 ALKRLKMLVDDENSSRRCQKSKSERLNGSRKKTMSNVSNWVFRLSFHDREAEER 474
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q10DK7|1A11_ORYSJ 1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/465 (67%), Positives = 372/465 (80%), Gaps = 7/465 (1%)
Query: 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRN 62
LLS KA CN+HGQDSSYFLGWQEYEKNP+D V NP+GIIQMGLAENQLSFDLLE WL++N
Sbjct: 13 LLSKKAGCNSHGQDSSYFLGWQEYEKNPFDPVSNPSGIIQMGLAENQLSFDLLEEWLEKN 72
Query: 63 PDAAGFKRDG--QSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
P A G +R+G S+FRELALFQDYHGLPAFK AL FMSE RG KV FD S IVLTAGA
Sbjct: 73 PHALGLRREGGGASVFRELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGA 132
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANE LMFCLA+ G+AFL+PTPYYPGFDRDLKWRTG EIVP+ C S NGF++T A+++
Sbjct: 133 TSANEALMFCLADHGDAFLIPTPYYPGFDRDLKWRTGAEIVPVHCASANGFRVTRPALDD 192
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AY+ AQKR L+VKGVL+TNPSNPLGT R +L +V+ + K IHLISDEIY+GT F+
Sbjct: 193 AYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAE 252
Query: 241 P--GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM 298
P GFVS +E++ R+ V +RVH+VYSLSKDLGLPGFRVGAIYS + VV+AATKM
Sbjct: 253 PPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATKM 312
Query: 299 SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGL 358
SSFGLVSSQTQYLL+ALL D+ FT++Y++ENK+R+K+RH +LV GL + GI CL SNAGL
Sbjct: 313 SSFGLVSSQTQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAGL 372
Query: 359 FCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 418
FCWVDM HL+RS +F EMELWKK+V++V LNISPGSSCHC EPGWFRVCFANMS TL
Sbjct: 373 FCWVDMSHLMRSRSFAGEMELWKKVVFEVGLNISPGSSCHCREPGWFRVCFANMSAKTLD 432
Query: 419 LSMQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLT---KWVFRLS 460
++MQRL++FVDS T N + ++ R S KW RL+
Sbjct: 433 VAMQRLRSFVDSATGGGDNAALRRAAVPVRSVSCPLAIKWALRLT 477
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|A2XLL2|1A11_ORYSI 1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/465 (67%), Positives = 372/465 (80%), Gaps = 7/465 (1%)
Query: 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRN 62
LLS KA CN+HGQDSSYFLGWQEYEKNP+D V NP+GIIQMGLAENQLSFDLLE WL++N
Sbjct: 13 LLSKKAGCNSHGQDSSYFLGWQEYEKNPFDPVSNPSGIIQMGLAENQLSFDLLEEWLEKN 72
Query: 63 PDAAGFKRDG--QSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
P A G +R+G S+FRELALFQDYHGLPAFK AL FMSE RG KV FD S IVLTAGA
Sbjct: 73 PHALGLRREGGGASVFRELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGA 132
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANE LMFCLA+ G+AFL+PTPYYPGFDRDLKWRTG EIVP+ C S NGF++T A+++
Sbjct: 133 TSANEALMFCLADHGDAFLIPTPYYPGFDRDLKWRTGAEIVPVHCASANGFRVTRPALDD 192
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AY+ AQKR L+VKGVL+TNPSNPLGT R +L +V+ + K IHLISDEIY+GT F+
Sbjct: 193 AYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAE 252
Query: 241 P--GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM 298
P GFVS +E++ R+ V +RVH+VYSLSKDLGLPGFRVGAIYS + VV+AATKM
Sbjct: 253 PPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATKM 312
Query: 299 SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGL 358
SSFGLVSSQTQYLL+ALL D+ FT++Y++ENK+R+K+RH +LV GL + GI CL SNAGL
Sbjct: 313 SSFGLVSSQTQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAGL 372
Query: 359 FCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 418
FCWVDM HL+RS +F EMELWKK+V++V LNISPGSSCHC EPGWFRVCFANMS TL
Sbjct: 373 FCWVDMSHLMRSRSFAGEMELWKKVVFEVGLNISPGSSCHCREPGWFRVCFANMSAKTLD 432
Query: 419 LSMQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLT---KWVFRLS 460
++MQRL++FVDS T N + ++ R S KW RL+
Sbjct: 433 VAMQRLRSFVDSATGGGDNAALRRAAVPVRSVSCPLAIKWALRLT 477
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Oryza sativa subsp. indica (taxid: 39946) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9S9U6|1A111_ARATH 1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/461 (66%), Positives = 382/461 (82%), Gaps = 12/461 (2%)
Query: 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRN 62
+LS K ++HGQDSSYFLGWQEYEKNP+ E N +GI+QMGLAENQLSFDL+E WL+ +
Sbjct: 1 MLSSKVVGDSHGQDSSYFLGWQEYEKNPFHESFNTSGIVQMGLAENQLSFDLIEKWLEEH 60
Query: 63 PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS 122
P+ G K++ +S+FR+LALFQDYHGLPAFK A+ +FM +IR NKV FDT+K+VLTAG+TS
Sbjct: 61 PEVLGLKKNDESVFRQLALFQDYHGLPAFKDAMAKFMGKIRENKVKFDTNKMVLTAGSTS 120
Query: 123 ANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAY 182
ANETLMFCLA PG+AFL+P PYYPGFDRDLKWRTGVEIVPI C S NG++ITE A+E+AY
Sbjct: 121 ANETLMFCLANPGDAFLIPAPYYPGFDRDLKWRTGVEIVPIHCVSSNGYKITEDALEDAY 180
Query: 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242
+ A K +L VKGVL+TNPSNPLGT+ +R EL+LL+ + K IH++SDEIYSGTVF SP
Sbjct: 181 ERALKHNLNVKGVLITNPSNPLGTSTTREELDLLLTFTSTKKIHMVSDEIYSGTVFDSPE 240
Query: 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG 302
F S++E+ KD+ N + ++H+VYSLSKDLGLPGFRVG IYSN++ VV+AATKMSSFG
Sbjct: 241 FTSVLEVAKDK---NMGLDGKIHVVYSLSKDLGLPGFRVGLIYSNNEKVVSAATKMSSFG 297
Query: 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 362
L+SSQTQ+LL+ LLSD++FT NY+ ENKKRL++R +LVSGL++AGISCLKSNAGLFCWV
Sbjct: 298 LISSQTQHLLANLLSDERFTTNYLEENKKRLRERKDRLVSGLKEAGISCLKSNAGLFCWV 357
Query: 363 DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 422
D+RHLL+SNTFEAE LW KIV +V LNISPGSSCHC EPGWFRVCFANMS+ T++++M
Sbjct: 358 DLRHLLKSNTFEAEHSLWTKIVCEVGLNISPGSSCHCDEPGWFRVCFANMSDQTMEVAMD 417
Query: 423 RLKAFVDSITTTLHNQSNHQ--SIKNSRRRSL-TKWVFRLS 460
R+K FVD +N Q ++ ++RRRSL KWV +LS
Sbjct: 418 RVKGFVD------NNNGGKQKRTMWDTRRRSLINKWVSKLS 452
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | ||||||
| 225467508 | 469 | PREDICTED: 1-aminocyclopropane-1-carboxy | 1.0 | 1.0 | 0.848 | 0.0 | |
| 359497594 | 469 | PREDICTED: 1-aminocyclopropane-1-carboxy | 1.0 | 1.0 | 0.846 | 0.0 | |
| 224127212 | 468 | 1-aminocyclopropane-1-carboxylate [Popul | 0.995 | 0.997 | 0.846 | 0.0 | |
| 224097212 | 467 | 1-aminocyclopropane-1-carboxylate [Popul | 0.976 | 0.980 | 0.861 | 0.0 | |
| 20152191 | 471 | 1-aminocyclopropane-1-carboxylate syntha | 1.0 | 0.995 | 0.830 | 0.0 | |
| 157921976 | 470 | 1-aminocyclopropane 1-carboxylate syntha | 0.978 | 0.976 | 0.818 | 0.0 | |
| 255579517 | 466 | acc synthase, putative [Ricinus communis | 0.938 | 0.944 | 0.850 | 0.0 | |
| 3273184 | 467 | 1-aminocyclopropane-1-carboxylate syntha | 0.995 | 1.0 | 0.805 | 0.0 | |
| 297802162 | 469 | 1-amino-cyclopropane-1-carboxylate synth | 1.0 | 1.0 | 0.782 | 0.0 | |
| 296083536 | 445 | unnamed protein product [Vitis vinifera] | 0.948 | 1.0 | 0.810 | 0.0 |
| >gi|225467508|ref|XP_002269780.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3 [Vitis vinifera] gi|147801368|emb|CAN74730.1| hypothetical protein VITISV_037836 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/469 (84%), Positives = 430/469 (91%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS KAT N+HGQDS YFLGW+EYEKN Y EV+NP+GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKMLSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAGFKRDG+SIFRELALFQDYHGLPAFKKALVEFMSEIRGNKV+FD +K+VLTAGA
Sbjct: 61 QNPDAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC+S NGFQITE+A+EE
Sbjct: 121 TSANETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQKR LKVKGVL+TNPSNPLGTT SR+ELNLLVN IT K IHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVSIME+L DRN NT+VW RVHIVYSLSKDLGLPGFRVGAIYSND VV+AATKMSS
Sbjct: 241 PGFVSIMEVLMDRNYMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLS +LSDKKFT+NY+SEN+KRLKQRH+ L+SGL+ AGI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL SNTFEAEMELWKKI+YDV+LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+QR+KAFVDS TTT +NQS HQS KN RR+S TKWVFRLSF DR ER
Sbjct: 421 LQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLSFRDREASER 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497594|ref|XP_003635576.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/469 (84%), Positives = 429/469 (91%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS KAT N+HGQDS YFLGW+EYEKN Y EV+NP+GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKMLSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAGFKRDG+SIFRELALFQDYHGLPAFKKALVEFMSEIRGNKV+FD +K+VLTAGA
Sbjct: 61 QNPDAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC+S NGFQITE+A+EE
Sbjct: 121 TSANETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQKR LKVKGVL+TNPSNPLGTT SR+ELNLLVN IT K IHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVSIME+L DRN NT+VW RVHIVYSLSKDLGLPGFRVGAIYSND VV+AATKMSS
Sbjct: 241 PGFVSIMEVLMDRNYMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLS +LSDKKFT+NY+SEN+KRLKQRH+ L+SGL+ GI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNTGIDCLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL SNTFEAEMELWKKI+YDV+LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+QR+KAFVDS TTT +NQS HQS KN RR+S TKWVFRLSF DR ER
Sbjct: 421 LQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLSFRDREASER 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127212|ref|XP_002320015.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222860788|gb|EEE98330.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/470 (84%), Positives = 441/470 (93%), Gaps = 3/470 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KATCNTHGQDSSYFLGWQEYEKNPYDE++NPTGIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKLLSRKATCNTHGQDSSYFLGWQEYEKNPYDEIKNPTGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
N DAAGFK+DGQSIFRELALFQDYHGLPAFKKALVEFM+EIRGNKVTFD +KIVLTAGA
Sbjct: 61 NNQDAAGFKKDGQSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVTFDQNKIVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS NGFQIT A+E+
Sbjct: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSSNGFQITAPALED 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
A+Q AQKR+L+VKGVLVTNPSNPLGTT++R+ELNLL+++ITEK IHLISDEIYSGTVF+S
Sbjct: 181 AFQEAQKRNLRVKGVLVTNPSNPLGTTITRSELNLLLSLITEKGIHLISDEIYSGTVFNS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVS+ME+LKD CE++QVWNRVH+VYSLSKDLGLPGFRVGAIYSNDDMVV+AATKMSS
Sbjct: 241 PGFVSVMEVLKDMKCESSQVWNRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLL+ALLSDKKFT+NYISEN+KRLKQR + LV GLEKAGISCLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLAALLSDKKFTRNYISENQKRLKQRQKLLVKGLEKAGISCLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WV+M+HLL SNTF+AEMELWKKIV+ VKLNISPGSSCHCTEPGWFRVCFANMSE+TL L+
Sbjct: 361 WVNMKHLLSSNTFDAEMELWKKIVHQVKLNISPGSSCHCTEPGWFRVCFANMSEETLNLA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFD-DRVTGER 469
+QRLK+FV+S+ ++NQS+HQ +KN+RR+SL KWV RLSFD DR ER
Sbjct: 421 IQRLKSFVESM--NINNQSHHQLLKNARRKSLAKWVLRLSFDHDREPEER 468
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097212|ref|XP_002310878.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222853781|gb|EEE91328.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/462 (86%), Positives = 433/462 (93%), Gaps = 4/462 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KATCNTHGQDSSYFLGWQEYEKNPYDE++NPTGIIQMGLAENQLSFDLLESWL
Sbjct: 1 MRLLSRKATCNTHGQDSSYFLGWQEYEKNPYDEIKNPTGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NP AAGFK+DGQSIFRELALFQDYHGLP FKKALVEFM+EIRGNKV FD +KIVLTAGA
Sbjct: 61 KNPGAAGFKKDGQSIFRELALFQDYHGLPEFKKALVEFMAEIRGNKVRFDQNKIVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS NGFQIT A+EE
Sbjct: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSSNGFQITAPALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
A+Q AQKR+L+VKGVLVTNPSNPLGTTM+ NELNLL++ +TEK IHLISDEIYSGTVFSS
Sbjct: 181 AFQEAQKRNLRVKGVLVTNPSNPLGTTMTGNELNLLLSFVTEKGIHLISDEIYSGTVFSS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVSI+E+LKDR CEN+QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVV+AATKMSS
Sbjct: 241 PGFVSILEVLKDRKCENSQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLSALLSDKKFT+NYISEN+KRLKQR + LV GLEKAGISCLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTRNYISENQKRLKQRQKLLVKGLEKAGISCLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WV+M+HLL SNTF EMELWKKIV++VKLNISPGSSCHCTEPGWFRVCFANMSE+TL L+
Sbjct: 361 WVNMKHLLSSNTFTEEMELWKKIVHEVKLNISPGSSCHCTEPGWFRVCFANMSEETLNLA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFD 462
+QRLK+FV+S + NQS+HQ +K+SRR+ LTKWVFRLSFD
Sbjct: 421 IQRLKSFVES----MKNQSHHQMLKSSRRKFLTKWVFRLSFD 458
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20152191|dbj|BAB89348.1| 1-aminocyclopropane-1-carboxylate synthase [Diospyros kaki] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/471 (83%), Positives = 421/471 (89%), Gaps = 2/471 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KA CNTHGQDSSYFLGWQEYEKNPYDE NPTGIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKLLSRKAACNTHGQDSSYFLGWQEYEKNPYDESHNPTGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
NPDAAGFKRDGQSIFRELALFQDYHGLP FKKALVEFMSEIRGNKV+FD K+VLTAGA
Sbjct: 61 SNPDAAGFKRDGQSIFRELALFQDYHGLPDFKKALVEFMSEIRGNKVSFDPKKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA+PGEAFLLPTPYYPGFDRDLKWRTGVEIVPI+CTS NGF+ITE+A+EE
Sbjct: 121 TSANETLMFCLADPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIKCTSSNGFRITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ A KR+LKVKGVLVTNPSNPLGTT+SR+ELNLL++ +TEK IHLISDEIYSGTVFSS
Sbjct: 181 AYQAAGKRNLKVKGVLVTNPSNPLGTTLSRHELNLLLSFVTEKGIHLISDEIYSGTVFSS 240
Query: 241 PGFVSIMEILKDRNCE-NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
PGF+S+MEIL D+ NT+VW RVHIVYSLSKDLGLPGFRVGAIYSNDD+VV AATKMS
Sbjct: 241 PGFLSVMEILMDKKYSMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVEAATKMS 300
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359
SFGLVSSQTQYLLSA+LSDKKF +NYISEN+KRL+ R L+SGLE AGI CLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSAMLSDKKFRKNYISENQKRLRHRQEMLISGLESAGIRCLKSNAGLF 360
Query: 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419
CWVDMRHLL S TF+AEMELWKKIVYDV LNISPGSSCHC EPGWFRVCFANMS TL L
Sbjct: 361 CWVDMRHLLSSETFDAEMELWKKIVYDVGLNISPGSSCHCDEPGWFRVCFANMSAATLNL 420
Query: 420 SMQRLKAFVDSITT-TLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
++QR+K FV S + NQS HQS+ NSRR+SLTKWVFRLSFD R ER
Sbjct: 421 AIQRIKLFVQSTAAGSKQNQSYHQSLNNSRRKSLTKWVFRLSFDGREPDER 471
|
Source: Diospyros kaki Species: Diospyros kaki Genus: Diospyros Family: Ebenaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157921976|gb|ABW03081.1| 1-aminocyclopropane 1-carboxylate synthase 1 [Prunus salicina] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/469 (81%), Positives = 424/469 (90%), Gaps = 10/469 (2%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS KATCN+HGQDSSYFLGWQEYEKNPY EVQN GIIQMGLAENQLSFD+LESWL
Sbjct: 1 MCMLSTKATCNSHGQDSSYFLGWQEYEKNPYHEVQNTKGIIQMGLAENQLSFDILESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAGFKR G+SIF ELALFQDYHGLPAFKKALV+FM+EIRGNKVTFD + +VLTAGA
Sbjct: 61 KNPDAAGFKRSGESIFAELALFQDYHGLPAFKKALVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETL+FCLA PGEA L+PTPYYPGFDRDLKWRTGVEIVPI CTS NGFQITETA++E
Sbjct: 121 TSANETLIFCLANPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALQE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQKR+L+VKGVLVTNPSNPLGTTM+R+ELNLL++ + +K IHLISDEIYSGTVFSS
Sbjct: 181 AYQAAQKRNLRVKGVLVTNPSNPLGTTMTRSELNLLLSFVEDKGIHLISDEIYSGTVFSS 240
Query: 241 PGFVSIMEILKDRNC-ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
P F S+ME+LK+R C EN+ +WNRVH+VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS
Sbjct: 241 PSFTSVMEVLKERKCDENSPMWNRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359
SFGL+SSQTQYLLSA+LSDKK T+NYISEN+KRLKQR ++LVSGL+KAGISCLK NAGLF
Sbjct: 301 SFGLISSQTQYLLSAMLSDKKLTKNYISENQKRLKQRQKRLVSGLQKAGISCLKGNAGLF 360
Query: 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419
CWVDMRHLLRSNTFEAEMELWKKIVY+V+LNISPGSSCHCTEPGWFRVCFAN+SE TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVRLNISPGSSCHCTEPGWFRVCFANLSEKTLDL 420
Query: 420 SMQRLKAFVDSI----TTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDR 464
+M RLKAFV T +Q+NH SRRRSLTKWVFRLSFDDR
Sbjct: 421 AMHRLKAFVGEYFNVPDTNGRSQTNH-----SRRRSLTKWVFRLSFDDR 464
|
Source: Prunus salicina Species: Prunus salicina Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579517|ref|XP_002530601.1| acc synthase, putative [Ricinus communis] gi|223529849|gb|EEF31781.1| acc synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/441 (85%), Positives = 413/441 (93%), Gaps = 1/441 (0%)
Query: 23 WQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALF 82
WQEYEKNPYDE++NPTGIIQMGLAENQLSFD+LESWL NPDAA FK+DGQSIFRELALF
Sbjct: 18 WQEYEKNPYDEIKNPTGIIQMGLAENQLSFDILESWLANNPDAANFKKDGQSIFRELALF 77
Query: 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPT 142
QDYHGLP FKKA+VEFMSEIRGN+VTFD +K+VLTAGATSANETL+FCLAEPGEAFLLPT
Sbjct: 78 QDYHGLPDFKKAMVEFMSEIRGNRVTFDQNKLVLTAGATSANETLIFCLAEPGEAFLLPT 137
Query: 143 PYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSN 202
PYYPGFDRDLKWRTGVEIVPI CTS NGFQ+T +A+EEAY AQ R+LKVKGVLVTNPSN
Sbjct: 138 PYYPGFDRDLKWRTGVEIVPIHCTSSNGFQVTASALEEAYLEAQNRNLKVKGVLVTNPSN 197
Query: 203 PLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN 262
PLGT M+R ELNLLVN I++K+IHLI DEIYSGTVFSSPGFVSIME+LKDR CENT++ N
Sbjct: 198 PLGTAMTRTELNLLVNFISDKSIHLICDEIYSGTVFSSPGFVSIMEVLKDRKCENTEISN 257
Query: 263 RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFT 322
RVHIVYSLSKDLGLPGFRVGAIYSNDD+VV+AATKMSSFGLVS+QTQ+LLSALLSDKKFT
Sbjct: 258 RVHIVYSLSKDLGLPGFRVGAIYSNDDLVVSAATKMSSFGLVSAQTQHLLSALLSDKKFT 317
Query: 323 QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKK 382
++YISEN+KRLKQR + L+ GLEKAGISCLKSNAGLFCWV+M+HLL+SNTFEAEMELWK
Sbjct: 318 KHYISENQKRLKQRQKMLIKGLEKAGISCLKSNAGLFCWVNMKHLLKSNTFEAEMELWKT 377
Query: 383 IVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTLHNQSNHQ 442
IVYDVKLNISPGSSCHCTEPGWFR+CFANMSEDTL L+M RLK+FVDSI T NQS+HQ
Sbjct: 378 IVYDVKLNISPGSSCHCTEPGWFRICFANMSEDTLNLAMNRLKSFVDSINNT-QNQSSHQ 436
Query: 443 SIKNSRRRSLTKWVFRLSFDD 463
+KNSRRRSLTKWVFRLSFD+
Sbjct: 437 MLKNSRRRSLTKWVFRLSFDN 457
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3273184|dbj|BAA31137.1| 1-aminocyclopropane-1-carboxylate synthase [Actinidia deliciosa] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/469 (80%), Positives = 421/469 (89%), Gaps = 2/469 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KA CN+HGQDSSYFLGWQEYEK PYDEV+NPTGIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKLLSRKAACNSHGQDSSYFLGWQEYEKKPYDEVRNPTGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
NP+ AGF RDGQSIFRELALFQDYHGLPAFK A+V+FMSEIRGNKV+FD K+VLTAGA
Sbjct: 61 NNPEPAGFMRDGQSIFRELALFQDYHGLPAFKNAMVDFMSEIRGNKVSFDPKKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAEPGEAFLLPTPYYPGFDRDL+WRTGVEIVPI CTS N FQIT++A+EE
Sbjct: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLQWRTGVEIVPIHCTSANSFQITDSALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQKR+L+VKGVLVTNPSNPLGTT++R ELNLL+ IT KNIHLISDEIYSGTVFSS
Sbjct: 181 AYQSAQKRNLRVKGVLVTNPSNPLGTTLTRPELNLLLTFITSKNIHLISDEIYSGTVFSS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
P FVSIME+LKD + +T+VWNRVHIVYSLSKDLGLPGFRVGAIYSNDD+VVAAATKMSS
Sbjct: 241 PDFVSIMEVLKD-SSHSTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVAAATKMSS 299
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLL+++LSDK FT++YISEN+KRLK+R L+SGL+ AGI CLKSNAGLFC
Sbjct: 300 FGLVSSQTQYLLASMLSDKNFTKHYISENQKRLKKRQEMLISGLQSAGIGCLKSNAGLFC 359
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL S +F++EMELWKKIVY V LNISPGSSCHC+EPGWFRVCFANMSEDTL ++
Sbjct: 360 WVDMRHLLSSKSFDSEMELWKKIVYQVGLNISPGSSCHCSEPGWFRVCFANMSEDTLDIA 419
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+QR+K FV + T H+Q H S+K S+R+SLTKWVFRLSFD R ER
Sbjct: 420 IQRIKTFVQT-TNNNHSQRIHPSVKKSKRKSLTKWVFRLSFDGREPDER 467
|
Source: Actinidia deliciosa Species: Actinidia deliciosa Genus: Actinidia Family: Actinidiaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802162|ref|XP_002868965.1| 1-amino-cyclopropane-1-carboxylate synthase 8 [Arabidopsis lyrata subsp. lyrata] gi|297314801|gb|EFH45224.1| 1-amino-cyclopropane-1-carboxylate synthase 8 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/469 (78%), Positives = 421/469 (89%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
MGLLS KATCNTHGQDSSYFLGW+EYEKNPYDE++NP GIIQMGLAENQLSFDL+ESWL
Sbjct: 1 MGLLSKKATCNTHGQDSSYFLGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAA FKR+GQSIFRELALFQDYHGLP+FK A+ +FMSE RGN+V+F+ +K+VLTAGA
Sbjct: 61 KNPDAANFKREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA+ G+AFLLPTPYYPGFDRDLKWRTG EIVPIQCTS NGF+IT++A+EE
Sbjct: 121 TSANETLMFCLADRGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCTSANGFRITKSALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AY+ AQK +LKVKGVL+TNPSNPLGTT +R ELN L++ I+ K IHLISDEIYSGTVF+S
Sbjct: 181 AYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGF+S+ME+LKDR ENT V++RVHIVYSLSKDLGLPGFRVGAIYSNDD VV+AATKMSS
Sbjct: 241 PGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGAIYSNDDFVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGL+SSQTQYLLS LLSDK FT+NY+ EN+ RLK R++KLVSGLE AGI CLKSNAGLFC
Sbjct: 301 FGLISSQTQYLLSTLLSDKNFTKNYLEENQIRLKNRYKKLVSGLEAAGIECLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL+SNTFEAE+ELWKKIVY+VKLNISPGSSCHC EPGWFRVCFANMSE+TLK++
Sbjct: 361 WVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANMSEETLKVA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+ RLK FVD ++T +Q HQ +KN R+ ++ WVFRLSF DR ER
Sbjct: 421 LDRLKGFVDGPSSTRRSQIEHQRLKNLRKMKVSNWVFRLSFHDREPEER 469
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083536|emb|CBI23525.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/469 (81%), Positives = 410/469 (87%), Gaps = 24/469 (5%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS KAT N+HGQDS YFLGW+EYEKN Y EV+NP+GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKMLSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAGFKRDG+SIFRELALFQDYHGLPAFKKALVEFMSEIRGNKV+FD +K+VLTAGA
Sbjct: 61 QNPDAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC+S NGFQITE+A+EE
Sbjct: 121 TSANETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQKR LKVKGVL+TNPSNPLGTT SR+ELNLLVN IT K IHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVSIME DLGLPGFRVGAIYSND VV+AATKMSS
Sbjct: 241 PGFVSIME------------------------DLGLPGFRVGAIYSNDVAVVSAATKMSS 276
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLS +LSDKKFT+NY+SEN+KRLKQRH+ L+SGL+ AGI CLKSNAGLFC
Sbjct: 277 FGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLFC 336
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL SNTFEAEMELWKKI+YDV+LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 337 WVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLA 396
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+QR+KAFVDS TTT +NQS HQS KN RR+S TKWVFRLSF DR ER
Sbjct: 397 LQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLSFRDREASER 445
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | ||||||
| UNIPROTKB|A5BL65 | 469 | VITISV_037836 "Putative unchar | 1.0 | 1.0 | 0.848 | 8.2e-218 | |
| UNIPROTKB|Q8S935 | 471 | DK-ACS1 "1-aminocyclopropane-1 | 1.0 | 0.995 | 0.830 | 3e-211 | |
| UNIPROTKB|O80334 | 467 | O80334 "1-aminocyclopropane-1- | 0.995 | 1.0 | 0.805 | 4.1e-207 | |
| TAIR|locus:2137579 | 469 | ACS8 "1-amino-cyclopropane-1-c | 1.0 | 1.0 | 0.773 | 1e-203 | |
| UNIPROTKB|O65028 | 470 | ACS2 "Pollen-specific 1-aminoc | 0.989 | 0.987 | 0.788 | 3.4e-203 | |
| UNIPROTKB|P37821 | 473 | ACS-1 "1-aminocyclopropane-1-c | 0.989 | 0.980 | 0.794 | 1.2e-202 | |
| TAIR|locus:2097350 | 470 | ACS9 "1-aminocyclopropane-1-ca | 1.0 | 0.997 | 0.782 | 8.2e-202 | |
| UNIPROTKB|Q9SXN8 | 473 | pPPACS1 "1-aminocyclopropane-1 | 0.989 | 0.980 | 0.788 | 2.8e-201 | |
| UNIPROTKB|O24544 | 472 | VR-ACS6 "1-aminocyclopropane-1 | 0.974 | 0.968 | 0.802 | 4.5e-201 | |
| UNIPROTKB|Q09PK3 | 481 | ACS1 "1-aminocyclopropane-1-ca | 0.989 | 0.964 | 0.779 | 1.2e-200 |
| UNIPROTKB|A5BL65 VITISV_037836 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
|---|
Score = 2104 (745.7 bits), Expect = 8.2e-218, P = 8.2e-218
Identities = 398/469 (84%), Positives = 430/469 (91%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS KAT N+HGQDS YFLGW+EYEKN Y EV+NP+GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKMLSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAGFKRDG+SIFRELALFQDYHGLPAFKKALVEFMSEIRGNKV+FD +K+VLTAGA
Sbjct: 61 QNPDAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC+S NGFQITE+A+EE
Sbjct: 121 TSANETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQKR LKVKGVL+TNPSNPLGTT SR+ELNLLVN IT K IHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVSIME+L DRN NT+VW RVHIVYSLSKDLGLPGFRVGAIYSND VV+AATKMSS
Sbjct: 241 PGFVSIMEVLMDRNYMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLS +LSDKKFT+NY+SEN+KRLKQRH+ L+SGL+ AGI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL SNTFEAEMELWKKI+YDV+LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+QR+KAFVDS TTT +NQS HQS KN RR+S TKWVFRLSF DR ER
Sbjct: 421 LQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLSFRDREASER 469
|
|
| UNIPROTKB|Q8S935 DK-ACS1 "1-aminocyclopropane-1-carboxylate synthase" [Diospyros kaki (taxid:35925)] | Back alignment and assigned GO terms |
|---|
Score = 2042 (723.9 bits), Expect = 3.0e-211, P = 3.0e-211
Identities = 391/471 (83%), Positives = 421/471 (89%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KA CNTHGQDSSYFLGWQEYEKNPYDE NPTGIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKLLSRKAACNTHGQDSSYFLGWQEYEKNPYDESHNPTGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
NPDAAGFKRDGQSIFRELALFQDYHGLP FKKALVEFMSEIRGNKV+FD K+VLTAGA
Sbjct: 61 SNPDAAGFKRDGQSIFRELALFQDYHGLPDFKKALVEFMSEIRGNKVSFDPKKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA+PGEAFLLPTPYYPGFDRDLKWRTGVEIVPI+CTS NGF+ITE+A+EE
Sbjct: 121 TSANETLMFCLADPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIKCTSSNGFRITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ A KR+LKVKGVLVTNPSNPLGTT+SR+ELNLL++ +TEK IHLISDEIYSGTVFSS
Sbjct: 181 AYQAAGKRNLKVKGVLVTNPSNPLGTTLSRHELNLLLSFVTEKGIHLISDEIYSGTVFSS 240
Query: 241 PGFVSIMEILKDRNCE-NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
PGF+S+MEIL D+ NT+VW RVHIVYSLSKDLGLPGFRVGAIYSNDD+VV AATKMS
Sbjct: 241 PGFLSVMEILMDKKYSMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVEAATKMS 300
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359
SFGLVSSQTQYLLSA+LSDKKF +NYISEN+KRL+ R L+SGLE AGI CLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSAMLSDKKFRKNYISENQKRLRHRQEMLISGLESAGIRCLKSNAGLF 360
Query: 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419
CWVDMRHLL S TF+AEMELWKKIVYDV LNISPGSSCHC EPGWFRVCFANMS TL L
Sbjct: 361 CWVDMRHLLSSETFDAEMELWKKIVYDVGLNISPGSSCHCDEPGWFRVCFANMSAATLNL 420
Query: 420 SMQRLKAFVDSITT-TLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
++QR+K FV S + NQS HQS+ NSRR+SLTKWVFRLSFD R ER
Sbjct: 421 AIQRIKLFVQSTAAGSKQNQSYHQSLNNSRRKSLTKWVFRLSFDGREPDER 471
|
|
| UNIPROTKB|O80334 O80334 "1-aminocyclopropane-1-carboxylate synthase" [Actinidia deliciosa (taxid:3627)] | Back alignment and assigned GO terms |
|---|
Score = 2003 (710.2 bits), Expect = 4.1e-207, P = 4.1e-207
Identities = 378/469 (80%), Positives = 421/469 (89%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KA CN+HGQDSSYFLGWQEYEK PYDEV+NPTGIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKLLSRKAACNSHGQDSSYFLGWQEYEKKPYDEVRNPTGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
NP+ AGF RDGQSIFRELALFQDYHGLPAFK A+V+FMSEIRGNKV+FD K+VLTAGA
Sbjct: 61 NNPEPAGFMRDGQSIFRELALFQDYHGLPAFKNAMVDFMSEIRGNKVSFDPKKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAEPGEAFLLPTPYYPGFDRDL+WRTGVEIVPI CTS N FQIT++A+EE
Sbjct: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLQWRTGVEIVPIHCTSANSFQITDSALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQKR+L+VKGVLVTNPSNPLGTT++R ELNLL+ IT KNIHLISDEIYSGTVFSS
Sbjct: 181 AYQSAQKRNLRVKGVLVTNPSNPLGTTLTRPELNLLLTFITSKNIHLISDEIYSGTVFSS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
P FVSIME+LKD + +T+VWNRVHIVYSLSKDLGLPGFRVGAIYSNDD+VVAAATKMSS
Sbjct: 241 PDFVSIMEVLKDSS-HSTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVAAATKMSS 299
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLL+++LSDK FT++YISEN+KRLK+R L+SGL+ AGI CLKSNAGLFC
Sbjct: 300 FGLVSSQTQYLLASMLSDKNFTKHYISENQKRLKKRQEMLISGLQSAGIGCLKSNAGLFC 359
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL S +F++EMELWKKIVY V LNISPGSSCHC+EPGWFRVCFANMSEDTL ++
Sbjct: 360 WVDMRHLLSSKSFDSEMELWKKIVYQVGLNISPGSSCHCSEPGWFRVCFANMSEDTLDIA 419
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+QR+K FV + T H+Q H S+K S+R+SLTKWVFRLSFD R ER
Sbjct: 420 IQRIKTFVQT-TNNNHSQRIHPSVKKSKRKSLTKWVFRLSFDGREPDER 467
|
|
| TAIR|locus:2137579 ACS8 "1-amino-cyclopropane-1-carboxylate synthase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1971 (698.9 bits), Expect = 1.0e-203, P = 1.0e-203
Identities = 363/469 (77%), Positives = 418/469 (89%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
MGLLS KA+CNTHGQDSSYF GW+EYEKNPYDE++NP GIIQMGLAENQLSFDL+ESWL
Sbjct: 1 MGLLSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAA F+R+GQSIFRELALFQDYHGLP+FK A+ +FMSE RGN+V+F+ +K+VLTAGA
Sbjct: 61 KNPDAANFQREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
T ANETLMFCLA+PG+AFLLPTPYYPGFDRDLKWRTG EIVPIQC S NGF+IT+ A+EE
Sbjct: 121 TPANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AY+ AQK +LKVKGVL+TNPSNPLGTT +R ELN L++ I+ K IHLISDEIYSGTVF++
Sbjct: 181 AYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTN 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGF+S+ME+LKDR ENT V++RVHIVYSLSKDLGLPGFRVG IYSNDD VV+AATKMSS
Sbjct: 241 PGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGL+SSQTQYLLSALLSDK FT+NY+ EN+ RLK RH+KLVSGLE AGI CLKSNAGLFC
Sbjct: 301 FGLISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL+SNTFEAE+ELWKKIVY+VKLNISPGSSCHC EPGWFRVCFAN+SE+TLK++
Sbjct: 361 WVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
+ RLK FVD + T +QS HQ +KN R+ ++ WVFRLSF DR ER
Sbjct: 421 LDRLKRFVDGPSPTRRSQSEHQRLKNLRKMKVSNWVFRLSFHDREPEER 469
|
|
| UNIPROTKB|O65028 ACS2 "Pollen-specific 1-aminocyclopropane-1-carboxylate synthase" [Petunia x hybrida (taxid:4102)] | Back alignment and assigned GO terms |
|---|
Score = 1966 (697.1 bits), Expect = 3.4e-203, P = 3.4e-203
Identities = 369/468 (78%), Positives = 424/468 (90%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KATCN+HGQDSSYFLGWQEYEKNPYDE+QNP GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKLLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLS 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAGFKR+G+SIFRELALFQDYHGLPAFK ALV+FM+EIRGNKVTFD++K+VLTAGA
Sbjct: 61 QNPDAAGFKRNGESIFRELALFQDYHGLPAFKNALVKFMAEIRGNKVTFDSNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLA+ G+AFLLPTPYYPGFDRDLKWRTG EIVPIQCTS NGF+ITE+A+EE
Sbjct: 121 TSANETLMFCLADRGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCTSSNGFRITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ A+ R+L+VKGVLVTNPSNPLGTT++RNEL LL++ + K IHLISDEIYSGTVF+S
Sbjct: 181 AYQEAKSRNLRVKGVLVTNPSNPLGTTLTRNELELLLSFVDTKGIHLISDEIYSGTVFNS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
P FVS+ME+L + + T+VW+RVHIVYSLSKDLGLPGFRVGAIYSND++VV+AATKMSS
Sbjct: 241 PNFVSVMEVLIENDYMYTEVWDRVHIVYSLSKDLGLPGFRVGAIYSNDELVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGL+SSQTQYLLSA+LSDKKF + Y+SEN+KRLK+RH LV+GL+ AGISCL+SNAGLFC
Sbjct: 301 FGLISSQTQYLLSAMLSDKKFRKKYVSENQKRLKKRHAMLVTGLQNAGISCLESNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL+SNTFEAE+ELWK+IVY V LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLKSNTFEAEIELWKEIVYQVGLNISPGSSCHCTEPGWFRVCFANMSEDTLTLA 420
Query: 421 MQRLKAFVDSITT---TLHNQSNHQSIKNSRRRSL-TKWVFRLSFDDR 464
M R+K+FVDS T T +NQ+N + NS ++ L +KW FRLSF+DR
Sbjct: 421 MARIKSFVDSSATSTDTHNNQTNQNTNTNSTKKKLFSKWGFRLSFNDR 468
|
|
| UNIPROTKB|P37821 ACS-1 "1-aminocyclopropane-1-carboxylate synthase" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 1961 (695.4 bits), Expect = 1.2e-202, P = 1.2e-202
Identities = 371/467 (79%), Positives = 414/467 (88%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS AT N+HGQDSSYFLGWQEYEKNPY EV N GIIQMGLAENQL FDLLESWL
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NP+AA FK++G+SIF ELALFQDYHGLPAFKKA+V+FM+EIRGNKVTFD + +VLTAGA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANET +FCLA+PGEA L+PTPYYPGFDRDLKWRTGVEIVPI CTS NGFQITETA+EE
Sbjct: 121 TSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++ + +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 241 PGFVSIMEILKDRNC-ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
P F+S+ME+LKDRNC EN++VW RVH+VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359
SFGLVSSQTQ+LLSA+LSDKK T+NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419
CWVDMRHLLRSNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 420 SMQRLKAFVDSITTTLHNQSNHQS--IKNSRRRSLTKWVFRLSFDDR 464
+MQRLKAFV QS + +SRR+SLTKWV RLSFDDR
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGGSQSSHLSHSRRQSLTKWVSRLSFDDR 467
|
|
| TAIR|locus:2097350 ACS9 "1-aminocyclopropane-1-carboxylate synthase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1953 (692.5 bits), Expect = 8.2e-202, P = 8.2e-202
Identities = 368/470 (78%), Positives = 417/470 (88%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LS K T N HGQDSSYFLGW+EYEKNPYDE++NP GIIQMGLAENQL FDL+E+WL
Sbjct: 1 MKQLSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQLCFDLIETWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAG K+DGQSIF+ELALFQDYHGLP FKKAL EFM EIRGN+VTFD SKIVL AG+
Sbjct: 61 KNPDAAGLKKDGQSIFKELALFQDYHGLPEFKKALAEFMEEIRGNRVTFDPSKIVLAAGS 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAEPG+AFLLPTPYYPGFDRDLKWRTG EIVPI C+S NGFQITE+A+++
Sbjct: 121 TSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQ 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQK LKVKGVLVTNPSNPLGT ++R ELNLLV+ IT KNIHLISDEIYSGTVF
Sbjct: 181 AYQQAQKLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGF 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
FVS+M++LKD+N EN++V RVHIVYSLSKDLGLPGFRVGAIYSND+MVV+AATKMSS
Sbjct: 241 EQFVSVMDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLSALLSDKKFT Y+ EN+KRLK R +KLVSGLE AGI+CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL +NTFEAE+ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLA 420
Query: 421 MQRLKAFVDSITTT-LHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGER 469
M+RLK +V+S + + ++S+H IK+ R+R+++ WVFR+S+ DRV ER
Sbjct: 421 MKRLKEYVESTDSRRVISKSSHDRIKSLRKRTVSNWVFRVSWTDRVPDER 470
|
|
| UNIPROTKB|Q9SXN8 pPPACS1 "1-aminocyclopropane-1-carboxylic acid synthase" [Pyrus pyrifolia (taxid:3767)] | Back alignment and assigned GO terms |
|---|
Score = 1948 (690.8 bits), Expect = 2.8e-201, P = 2.8e-201
Identities = 368/467 (78%), Positives = 413/467 (88%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS AT N+HGQDSSYFLGWQEYEKNPY EV N GIIQMGLAENQL FDLLESWL
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NP+AA FK++G+SIF ELALFQDYHGLPAFKKA+V+FM+EIRGNKVTFD + +VLTAGA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANET +FCLA+PGEAFL+PTPYYPGFDRDLKWRTGVEIVPI CT+ NGFQITETA+EE
Sbjct: 121 TSANETFIFCLADPGEAFLIPTPYYPGFDRDLKWRTGVEIVPIHCTNSNGFQITETALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ A+K +L+VKGVLVTNPSNPLGTTM+RNEL LL++ + +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKCNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 241 PGFVSIMEILKDRNC-ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
P F+S+ME+LKDRNC EN +VW RVH+VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENFEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359
SFGLVSSQTQ+LLSA+LSDKK T+NYI+EN KRLKQR + LVSGL+KAGISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAGLF 360
Query: 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419
CWVDMRHLLRSNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 420 SMQRLKAFVDSITTT--LHNQSNHQSIKNSRRRSLTKWVFRLSFDDR 464
+MQRLKAFV ++ +S + +SR +SLTKWV RLSFDDR
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGRSQSSHLSHSRGQSLTKWVSRLSFDDR 467
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| UNIPROTKB|O24544 VR-ACS6 "1-aminocyclopropane-1-carboxylate synthase" [Vigna radiata var. radiata (taxid:3916)] | Back alignment and assigned GO terms |
|---|
Score = 1946 (690.1 bits), Expect = 4.5e-201, P = 4.5e-201
Identities = 373/465 (80%), Positives = 418/465 (89%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LS KATCN+HGQDSSYFLGWQEYEKNPYDEV NP GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKFLSTKATCNSHGQDSSYFLGWQEYEKNPYDEVLNPEGIIQMGLAENQLSFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPD AGFK DG+SIFRELALFQDYHGLP+FKKALV+FM+EIRGNKVTFD + IVLTAG+
Sbjct: 61 KNPDVAGFKSDGKSIFRELALFQDYHGLPSFKKALVDFMAEIRGNKVTFDPNHIVLTAGS 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSAN+TLMFCLAE G+AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS N FQITE A+++
Sbjct: 121 TSANQTLMFCLAELGDAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSSNNFQITEAALKQ 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ A+KR+L+VKGVLVTNPSNPLGTTMSR+ELNLLV+ I +KN+HLISDEIYSGTV++S
Sbjct: 181 AYQEAKKRNLRVKGVLVTNPSNPLGTTMSRSELNLLVDFIKDKNMHLISDEIYSGTVYNS 240
Query: 241 PGFVSIMEILKDRN----CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT 296
PGFVSIMEILKDRN C VW+RVHIVYSLSKDLGLPGFRVGAIYS +++VVAAAT
Sbjct: 241 PGFVSIMEILKDRNDLKDC-GANVWDRVHIVYSLSKDLGLPGFRVGAIYSENEVVVAAAT 299
Query: 297 KMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN- 355
KMSSFGLVSSQTQYLLSA+L DKKFT+NYISEN KRLK+R R LVSGL+KAGISCLK+N
Sbjct: 300 KMSSFGLVSSQTQYLLSAMLGDKKFTKNYISENLKRLKRRQRNLVSGLQKAGISCLKTNN 359
Query: 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 415
AGLFCWVDMRHLL SNTFEAEMELWKKI+Y+V+LNISPGSSCHCTEPGWFR+CFANMSE+
Sbjct: 360 AGLFCWVDMRHLLHSNTFEAEMELWKKILYEVRLNISPGSSCHCTEPGWFRMCFANMSEE 419
Query: 416 TLKLSMQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLS 460
TL L+M+RLK FV + N + +++SRR+SL+ WVFRLS
Sbjct: 420 TLNLAMKRLKTFVQE--SNHDNGCTAKRVQSSRRKSLSNWVFRLS 462
|
|
| UNIPROTKB|Q09PK3 ACS1 "1-aminocyclopropane-1-carboxylate synthase" [Cucumis sativus (taxid:3659)] | Back alignment and assigned GO terms |
|---|
Score = 1942 (688.7 bits), Expect = 1.2e-200, P = 1.2e-200
Identities = 368/472 (77%), Positives = 416/472 (88%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS KATCN+HGQDSSYFLGW+ YEKNP+DE NP GIIQMGLAENQLSFDLLESWL
Sbjct: 1 MKMLSTKATCNSHGQDSSYFLGWEAYEKNPFDETSNPNGIIQMGLAENQLSFDLLESWLT 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAA FKRDG+SIFRELALFQDYHGLPAFKKALVEFM+EIRGNKVTF+ + IVLTAGA
Sbjct: 61 KNPDAASFKRDGKSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVTFEANNIVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAE G+AFLLPTPYYPGFDRDLKWRTGVEIVPI CTS NGFQ+T+ A+E+
Sbjct: 121 TSANETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQVTQPALEQ 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQ R+L+VKGVLVTNPSNPLGTTM+RNEL+L+ + IT K IHLISDEIYSGTVF S
Sbjct: 181 AYQEAQARNLRVKGVLVTNPSNPLGTTMTRNELDLVFDFITSKGIHLISDEIYSGTVFGS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVS ME+LK+R+ E+ +VW RVHIVYSLSKDLGLPGFRVGAIYSND+MVVAAATKMSS
Sbjct: 241 PGFVSAMEVLKERSNEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVAAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLSA+LSDKKFT+ YISEN+KRLKQR + LVSGLEKAGI CL+SNAGLFC
Sbjct: 301 FGLVSSQTQYLLSAMLSDKKFTRTYISENQKRLKQRQKMLVSGLEKAGIKCLESNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL S+TFE E++LWKKIVY+V LNISPGSSCHCTEPGWFRVCFANMS+ TLKL+
Sbjct: 361 WVDMRHLLESDTFECELKLWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSQSTLKLA 420
Query: 421 MQRLKAFVD--------SITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDR 464
++RLK+FV +++TT N + + KN ++ TKWVFR S D+
Sbjct: 421 IRRLKSFVQELRSVSTPNVSTTTTNIHDSKFSKNIKKNIFTKWVFRQSVQDQ 472
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q5E9H2 | 1A1L1_BOVIN | No assigned EC number | 0.3146 | 0.8635 | 0.8067 | yes | no |
| Q00379 | 1A12_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.5258 | 0.9722 | 0.9230 | N/A | no |
| Q9MB95 | 1A11_PRUMU | 4, ., 4, ., 1, ., 1, 4 | 0.5657 | 0.8997 | 0.8577 | N/A | no |
| Q9M2Y8 | 1A19_ARATH | 4, ., 4, ., 1, ., 1, 4 | 0.7829 | 1.0 | 0.9978 | no | no |
| Q00257 | 1A12_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.7904 | 0.9808 | 0.9684 | N/A | no |
| Q10DK7 | 1A11_ORYSJ | 4, ., 4, ., 1, ., 1, 4 | 0.6752 | 0.9765 | 0.9404 | yes | no |
| Q43309 | 1A14_ARATH | 4, ., 4, ., 1, ., 1, 4 | 0.7341 | 1.0 | 0.9894 | no | no |
| Q42881 | 1A13_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.7913 | 0.9893 | 0.9893 | N/A | no |
| P37821 | 1A1C_MALDO | 4, ., 4, ., 1, ., 1, 4 | 0.7944 | 0.9893 | 0.9809 | N/A | no |
| Q9T065 | 1A18_ARATH | 4, ., 4, ., 1, ., 1, 4 | 0.7739 | 1.0 | 1.0 | yes | no |
| A2XLL2 | 1A11_ORYSI | 4, ., 4, ., 1, ., 1, 4 | 0.6752 | 0.9765 | 0.9404 | N/A | no |
| P18485 | 1A12_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.5321 | 0.9765 | 0.9443 | N/A | no |
| P27486 | 1A1C_DIACA | 4, ., 4, ., 1, ., 1, 4 | 0.5328 | 0.8997 | 0.8162 | N/A | no |
| Q37001 | 1A15_ARATH | 4, ., 4, ., 1, ., 1, 4 | 0.7553 | 1.0 | 0.9978 | no | no |
| P23279 | 1A11_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.5193 | 0.9722 | 0.9249 | N/A | no |
| P29535 | 1A14_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.5514 | 0.9061 | 0.8928 | N/A | no |
| Q96QU6 | 1A1L1_HUMAN | No assigned EC number | 0.3226 | 0.8805 | 0.8243 | yes | no |
| P23599 | 1A11_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.5193 | 0.9722 | 0.9249 | N/A | no |
| Q07262 | 1A1C_TOBAC | 4, ., 4, ., 1, ., 1, 4 | 0.5391 | 0.9658 | 0.9226 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ACS1 | SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_1179, whole genome shotgun sequence); (469 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| pVvSPMS | SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (369 aa) | • | • | 0.916 | |||||||
| grip58 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (265 aa) | • | • | 0.907 | |||||||
| SAMDC | SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (360 aa) | • | 0.899 | ||||||||
| GSVIVG00032257001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (336 aa) | • | 0.899 | ||||||||
| GSVIVG00028846001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (297 aa) | • | 0.899 | ||||||||
| METK5 | RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa) | • | 0.899 | ||||||||
| GSVIVG00025952001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (318 aa) | • | 0.899 | ||||||||
| GSVIVG00025412001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (816 aa) | • | 0.899 | ||||||||
| GSVIVG00024734001 | RecName- Full=Cytosine-specific methyltransferase; EC=2.1.1.37; (926 aa) | • | 0.899 | ||||||||
| METK4 | RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 469 | |||
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 1e-107 | |
| PLN02994 | 153 | PLN02994, PLN02994, 1-aminocyclopropane-1-carboxyl | 1e-62 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 2e-61 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 3e-57 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 8e-38 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 9e-31 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 9e-29 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 3e-25 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 4e-25 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 2e-24 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 2e-23 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 6e-22 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 2e-20 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 2e-20 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 9e-20 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 2e-18 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 2e-18 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 3e-18 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 2e-17 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 2e-17 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 4e-17 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 1e-16 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 4e-16 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 5e-16 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 8e-16 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 3e-15 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 4e-15 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 6e-15 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 8e-15 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 1e-14 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 3e-14 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 1e-13 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 1e-13 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 3e-13 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 6e-13 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 1e-12 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 2e-12 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 2e-12 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 3e-12 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 6e-12 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 6e-12 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 1e-11 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 2e-11 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 1e-10 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 1e-10 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 3e-10 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 3e-10 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 4e-10 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 6e-10 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 6e-10 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 1e-09 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 1e-09 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 2e-09 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 7e-09 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 8e-09 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 1e-08 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 3e-08 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 3e-08 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 3e-08 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 4e-08 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 9e-08 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 3e-07 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 9e-07 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 4e-06 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 4e-06 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 5e-06 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 8e-06 | |
| PLN02672 | 1082 | PLN02672, PLN02672, methionine S-methyltransferase | 3e-05 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 5e-05 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 1e-04 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 2e-04 | |
| PRK15481 | 431 | PRK15481, PRK15481, transcriptional regulatory pro | 2e-04 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 3e-04 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 4e-04 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 4e-04 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 8e-04 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 0.001 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 0.002 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 0.003 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 0.004 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 1007 bits (2606), Expect = 0.0
Identities = 391/468 (83%), Positives = 432/468 (92%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M LLS KATCN+HGQDSSYFLGW+EYEKNPYDE++NP+GIIQMGLAENQLSFDL+ESWL
Sbjct: 1 MKLLSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NPDAAG KR+GQSIFRELALFQDYHGLPAFK AL EFMSEIRGNKVTFD +K+VLTAGA
Sbjct: 61 KNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANETLMFCLAEPG+AFLLPTPYYPGFDRDLKWRTGVEIVPI C+S NGFQITE+A+EE
Sbjct: 121 TSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ AQK +LKVKGVL+TNPSNPLGTT +R ELNLLV+ IT KNIHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS 240
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
PGFVS+ME+LKDR ENT V NRVHIVYSLSKDLGLPGFRVGAIYSND+MVV+AATKMSS
Sbjct: 241 PGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS 300
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
FGLVSSQTQYLLSALLSDKKFT+NY+ EN+KRLKQR +KLVSGLE AGI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFC 360
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
WVDMRHLL+SNTFEAEMELWKKIVY+VKLNISPGSSCHCTEPGWFRVCFANMSE+TL L+
Sbjct: 361 WVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLA 420
Query: 421 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTGE 468
M+RLK+FV+S + N+S+HQ +KN RR++++KWVFRLSF DR E
Sbjct: 421 MKRLKSFVESDSGRRINKSSHQRLKNLRRKTVSKWVFRLSFHDREPEE 468
|
Length = 468 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 643 bits (1660), Expect = 0.0
Identities = 259/426 (60%), Positives = 336/426 (78%), Gaps = 2/426 (0%)
Query: 4 LSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNP 63
LS A THG+DS YF GW+ Y+++PYDE NP+G+IQMGLAENQ+SFDLLE +L ++P
Sbjct: 13 LSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSFDLLEEYLKQHP 72
Query: 64 DAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSA 123
+A+ + G FRE ALFQDYHGL +F++A+ FM +IRG K FD +IVLTAGAT+A
Sbjct: 73 EASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAA 132
Query: 124 NETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQ 183
NE L F LA+PG+A L+PTPYYPGFDRDL+WRTGV+IVPI C S N FQ+T A+E AYQ
Sbjct: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQ 192
Query: 184 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243
A+ +++V+GVL+TNPSNPLG T+ R+ L +++ + KNIHL+SDEIYSG+VFS+ F
Sbjct: 193 EAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEF 252
Query: 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL 303
VS+ EI++ R V RVHIVYSLSKDLGLPGFRVG IYS +D VV A +MSSF L
Sbjct: 253 VSVAEIVEARG--YKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTL 310
Query: 304 VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 363
VSSQTQ+LL+++LSD++FT+NYI N++RL++R+ +V GL +AGI CLK NAGLFCW++
Sbjct: 311 VSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMN 370
Query: 364 MRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 423
+ LL + T E E+ LW I+ +VKLNISPGSSCHC+EPGWFRVCFANMSEDTL+++++R
Sbjct: 371 LSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKR 430
Query: 424 LKAFVD 429
+ F+D
Sbjct: 431 IHRFMD 436
|
Length = 447 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 527 bits (1358), Expect = 0.0
Identities = 246/466 (52%), Positives = 340/466 (72%), Gaps = 8/466 (1%)
Query: 2 GLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDR 61
+LS AT + HG++S YF GW+ Y+K+P+ +NP GIIQMGLAENQL DL++ W+
Sbjct: 10 AILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKE 69
Query: 62 NPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGAT 121
NP+A+ +G F ++A FQDYHGL F++A+ FM + RG KVTFD ++V++ GAT
Sbjct: 70 NPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGAT 129
Query: 122 SANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEA 181
ANET+MFCLA+PG+ FL+P+PYY FDRDL+WRTGVEI+P+ C+S + F++T A + A
Sbjct: 130 GANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWA 189
Query: 182 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241
Y+ AQ+ + KVKG+++TNPSNPLGT + ++ L LV +T KNIHL+ DEIY+ TVF+
Sbjct: 190 YKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG 249
Query: 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF 301
FVS+ E++ D + V + +HIVYSLSKD+GLPGFRVG +YS +D VV+ A KMSSF
Sbjct: 250 DFVSVAEVVNDVDISEVNV-DLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSF 308
Query: 302 GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 361
GLVSSQTQ +L+++LSD +F N++ E+ +RL RH+ +G++KA I+CL SNAGLF W
Sbjct: 309 GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAW 368
Query: 362 VDMRHLLRS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
+D+RHLLR N+FE+E+ELW I+ VKLN+SPGSS CTEPGWFR+CFANM +DTL ++
Sbjct: 369 MDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVA 428
Query: 421 MQRLKAFVDSITTTLHNQS--NHQSIKNSRRRSLTKWV---FRLSF 461
+ R++ FV + ++ N Q I+N + L KW RLSF
Sbjct: 429 LGRIQDFVSKNKNKIVEKASENDQVIQNKNAKKL-KWRQSNLRLSF 473
|
Length = 496 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 322 bits (828), Expect = e-107
Identities = 116/389 (29%), Positives = 181/389 (46%), Gaps = 36/389 (9%)
Query: 40 IIQMGLAENQLSFD--LLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVE 97
++ L N+ D L + DA L+ GLP ++AL +
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKDAL--------AGGTRNLYGPTDGLPELREALAK 52
Query: 98 FMSEIRGNKVTFDTSK-IVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWR 155
F+ R + D +V +GA + E L+F L PG+A L+P P YP + R +
Sbjct: 53 FLG--RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA 110
Query: 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNL 215
G E+V S N F + A+E A + + K VL T+P NP GT + EL
Sbjct: 111 -GGEVVRYPLYSSNDFHLDFDALEAALK---EATEGNKVVLHTSPHNPTGTVATLEELEK 166
Query: 216 LVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275
L+++ E NI L+ DE Y+G VF S V+ +L + + +V S SK G
Sbjct: 167 LLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEG------PN--LLVVGSFSKAFG 218
Query: 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQ 335
L G+RVG I N V++ K++ S+ Q +A LSD + + E ++R+K+
Sbjct: 219 LAGWRVGYILGNAA-VISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKE 277
Query: 336 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS 395
R L GLE AG+S L S AG F + EA + L + ++ +V + ++PGS
Sbjct: 278 RRDYLRDGLEAAGLSVLPSQAGFFLLTGLDP-------EAALALAQVLLEEVGVYVTPGS 330
Query: 396 SCHCTEPGWFRVCFANMSEDTLKLSMQRL 424
S PGW R+ A +E+ L+ ++ +
Sbjct: 331 SFGG--PGWLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 1e-62
Identities = 82/146 (56%), Positives = 106/146 (72%), Gaps = 1/146 (0%)
Query: 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRN 62
LLS A + HG+ S YF GW+ Y+ NP+D + NP GIIQMGLAENQL DL+E W++ N
Sbjct: 8 LLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEEN 67
Query: 63 PDAAGFKRDGQ-SIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGAT 121
P A +G F+++ALFQDYHGL F+KA+ FM+E RG +V FD IVL+AGAT
Sbjct: 68 PHADICTAEGTIDSFKDIALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGAT 127
Query: 122 SANETLMFCLAEPGEAFLLPTPYYPG 147
+ANE +MFC+A+PG+AFL+PTPYY
Sbjct: 128 AANEIIMFCIADPGDAFLVPTPYYAA 153
|
Length = 153 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 2e-61
Identities = 94/353 (26%), Positives = 163/353 (46%), Gaps = 32/353 (9%)
Query: 77 RELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGE 136
L + GLP ++A+ E++ G V +IV+T GA A L+ L PG+
Sbjct: 27 AGLLGYYPDPGLPELREAIAEWLGRRGGVDV--PPEEIVVTNGAQEALSLLLRALLNPGD 84
Query: 137 AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196
L+P P YPG++ + G E+VP+ GF + +E A K K K +
Sbjct: 85 EVLVPDPTYPGYEAAAR-LAGAEVVPVPLDEEGGFLLDLELLEAA-----KTP-KTKLLY 137
Query: 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 256
+ NP+NP G +S EL L + + I +ISDE Y+ V+ + +L
Sbjct: 138 LNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGE-PPPALALLDA---- 192
Query: 257 NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQYLLSA 314
+ RV ++ S SK GLPG R+G + + + ++ K+ + S+ +Q +A
Sbjct: 193 ----YERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAA 248
Query: 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSNTF 373
L D + ++ E ++R ++R L+ L++ G + +K + G F W+D+ +
Sbjct: 249 ALDD---GEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG--DDEE 303
Query: 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426
E L + V + PGS+ G+ R+ FA E+ L+ +++RL
Sbjct: 304 FLERLLLEAGVV-----VRPGSAFGEGGEGFVRLSFAT-PEEELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 3e-57
Identities = 96/355 (27%), Positives = 164/355 (46%), Gaps = 34/355 (9%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCLAEPGEAFLLPT 142
G+P ++A+ E R + D +I++TAGA A L PG+ L+P
Sbjct: 63 PSAGIPELREAIAEKYK--RRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPD 120
Query: 143 PYYPGFDRDLKWRTGVEIVPIQC-TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
P YP ++ +K G + VP+ NGF+ +E A + K K +++ +P+
Sbjct: 121 PGYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAA--ITPK----TKAIILNSPN 173
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261
NP G S+ EL +V + E +I +ISDEIY V+ SI+E+ R
Sbjct: 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGAR-------- 225
Query: 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK---MSSFGLVSSQTQYLLSALLSD 318
+R + S SK G+ G+R+G + + ++AA K + + QY A L+
Sbjct: 226 DRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSC-APTPAQYAAIAALNG 284
Query: 319 KKFTQNYISENKKRLKQRHRKLVSGL-EKAGISCLKS-NAGLFCWVDMRHLLRSNTFEAE 376
+ + + E ++ ++R LV L E G+S +K + + + LL S F A+
Sbjct: 285 PQ-SDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEF-AK 342
Query: 377 MELWKKIVYDVKLNISPGSS-CHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
+L ++ V + PGS G+ R+ A SE+TL+ +++RL F+
Sbjct: 343 -KLLEE--AGVAV--VPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAE 391
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 8e-38
Identities = 86/350 (24%), Positives = 168/350 (48%), Gaps = 29/350 (8%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+P ++A+ + R N + +D S++++T GA A L +PG+ ++P PY+
Sbjct: 69 GIPELREAIAAKLK--RDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWV 126
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ +K GV V + NGF++T +E A K K +++ +PSNP G
Sbjct: 127 SYPEMVKLAGGV-PVFVPTGEENGFKLTVEQLEAA------ITPKTKALILNSPSNPTGA 179
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
S EL + ++ E +I ++SDEIY V+ F SI + + + +R
Sbjct: 180 VYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPE-------LRDRTIT 232
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYL-LSALLSDKKFTQ 323
V SK + G+R+G + ++ A +K+ S +S QY ++AL Q
Sbjct: 233 VNGFSKAYAMTGWRLGYAAGPKE-LIKAMSKLQSHSTSNPTSIAQYAAVAALNGP----Q 287
Query: 324 NYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKK 382
+ + E ++ ++R +V GL + G+ C K + + ++ LL + +E +
Sbjct: 288 DEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLL-GKSITDSLEFAEA 346
Query: 383 IVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432
++ + + + PG + PG+ R+ +A S + L+ ++R++ F++S+
Sbjct: 347 LLEEAGVAVVPGIA--FGAPGYVRLSYAT-SLEDLEEGLERIERFLESLK 393
|
Length = 393 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 9e-31
Identities = 94/355 (26%), Positives = 168/355 (47%), Gaps = 45/355 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYY 145
GL ++A +F+ E + + ++I++T GAT A + + EPG+ LLP P Y
Sbjct: 68 GLLELRQAAADFVKEKYN--LDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAY 125
Query: 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
PG++ + G EIV I T+ N F +T +E+A L Q K+K V++ P+NP G
Sbjct: 126 PGYEPIVNL-VGAEIVEID-TTENDFVLTPEMLEKAI-LEQGD--KLKAVILNYPANPTG 180
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265
T SR ++ L +++ + +I +ISDE+YS ++ VSI E L D +
Sbjct: 181 VTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPD----------QTI 230
Query: 266 IVYSLSKDLGLPGFRVGAIYSNDDMV----------VAAATKMSSFGLVSSQTQYLLSAL 315
++ LSK + G+R+G I++ + V AAT M+ F V + T AL
Sbjct: 231 LINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDAL 290
Query: 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEA 375
+ YI +R ++ + G +K + + + + ++F+
Sbjct: 291 ----PMKKEYI--------KRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSFKF 338
Query: 376 EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
+ +K + PG++ G+ R+ +A S +T+K +M+RLK +++
Sbjct: 339 LQDFARK----KAVAFIPGAAFGPYGEGYVRLSYA-ASMETIKEAMKRLKEYMEE 388
|
Length = 391 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 9e-29
Identities = 99/345 (28%), Positives = 172/345 (49%), Gaps = 32/345 (9%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
GL +KA F+ + + + S+I++T GA+ A + + EPG +LP P YP
Sbjct: 66 GLLELRKAACNFVKDKYDLHYSPE-SEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYP 124
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
G++ ++ G + V I S GF++T A+E A + +K + V++ PSNP G
Sbjct: 125 GYEPIIRL-CGAKPVFIDTRS-TGFRLTAEALENA--ITEK----TRCVVLPYPSNPTGV 176
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
T+S+ EL + +++ +KNI ++SDEIYS V+ P SI + R E T V N
Sbjct: 177 TLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMR--EKTIVIN---- 229
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQY-LLSALLSDKKFTQ 323
LSK + G+R+G +++ + K+ + + SS +QY L AL + K +
Sbjct: 230 --GLSKSHSMTGWRIGFLFAPSY-LAKHILKVHQYNVTCASSISQYAALEALTAGKDDAK 286
Query: 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
+ KKR + +L+S G+ K + + + H ++F+ ++L ++
Sbjct: 287 MMRHQYKKRRDYVYNRLIS----MGLDVEKPTGAFYLFPSIGH-FTMSSFDFALDLVEE- 340
Query: 384 VYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
L + PGS+ G+ R+ +A S +TLK + RL+AF+
Sbjct: 341 ---AGLAVVPGSAFSEYGEGYVRLSYA-YSIETLKEGLDRLEAFL 381
|
Length = 387 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 95/373 (25%), Positives = 152/373 (40%), Gaps = 88/373 (23%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G P ++A+ E ++ G +T D IV+T GA A + + PG+ ++ PY+
Sbjct: 74 GYPEVREAIAESLNRRFGTPLTADH--IVMTCGAAGALNVALKAILNPGDEVIVFAPYFV 131
Query: 147 GFDRDLKWRTGVE-------IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN 199
++R V+ +VP T + FQ A+E A K K V++ +
Sbjct: 132 ------EYRFYVDNHGGKLVVVP---TDTDTFQPDLDALEAAITP------KTKAVIINS 176
Query: 200 PSNPLGTTMSRNELNLLVNIITEKN------IHLISDEIYSGTVFSSPGFVSIMEILKDR 253
P+NP G S L L ++ EK+ I+LISDE Y V+ I +
Sbjct: 177 PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY---- 232
Query: 254 NCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-----VVAAATKMS-SFGLV--S 305
+N+ V VYS SK L LPG R+G I N +M +VAA + G V
Sbjct: 233 -YDNSIV------VYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAP 285
Query: 306 SQTQYLLSALL---SDKKFTQNYISENKKRLKQRHRK-LVSGLEKAGISCLKSNAGLFCW 361
+ Q +++ L D +S K+ R L GL + G C+K + +
Sbjct: 286 ALMQRVVAKCLDATVD-------VSIYKRN-----RDLLYDGLTELGFECVKPQGAFYLF 333
Query: 362 VDMRHLLRS-----NTF-EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 415
+S F E + L + PGS C PG+FR+ + + +
Sbjct: 334 P------KSPEEDDVAFCEKAKKH--------NLLLVPGSGFGC--PGYFRLSYC-VDTE 376
Query: 416 TLKLSMQRLKAFV 428
T++ S+ +
Sbjct: 377 TIERSLPAFEKLA 389
|
Length = 394 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 72/268 (26%), Positives = 128/268 (47%), Gaps = 35/268 (13%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMF---CLAEPGEAFLLPTP 143
G+P ++A ++ + + + +I++T G + E ++F + +PG+ L+P P
Sbjct: 67 GIPELREAFAKYYKKWG---IDVEPDEILITNGGS---EAILFAMMAICDPGDEILVPEP 120
Query: 144 YYP---GFDRDLKWRTGVEIVPIQCTSLNGFQI-TETAIEEAYQLAQKRHLKVKGVLVTN 199
+Y GF GV+IVP+ GF + ++ IE+ K K +L++N
Sbjct: 121 FYANYNGFATSA----GVKIVPVTTKIEEGFHLPSKEEIEKLITP------KTKAILISN 170
Query: 200 PSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQ 259
P NP G ++ EL +L I + ++ LISDE+Y V+ + S + + E +
Sbjct: 171 PGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSL------EGLE 224
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL-VSSQTQYLLSALLSD 318
+RV I+ S+SK G R+G + S + ++AAA K+ L + Q +ALL
Sbjct: 225 --DRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALL-- 280
Query: 319 KKFTQNYISENKKRLKQRHRKLVSGLEK 346
++Y E ++ K+R L L K
Sbjct: 281 -DTPESYFDEVREEYKKRRDILYEELNK 307
|
Length = 397 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 82/356 (23%), Positives = 147/356 (41%), Gaps = 42/356 (11%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G A ++A+ E++S K+T D +VLT+G + A E + LA PG L+P P +P
Sbjct: 74 GALAAREAVAEYLSSDLPGKLTAD--DVVLTSGCSQAIEICIEALANPGANILVPRPGFP 131
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+D + +G+E+ ++I +E LA + K ++V NPSNP G+
Sbjct: 132 LYDTRAAF-SGLEVRLYDLLPEKDWEIDLDGLE---SLADE---KTVAIVVINPSNPCGS 184
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
SR+ L + + + I +I+DEIY VF F+ + + V V
Sbjct: 185 VFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASF-------ASIV--PVLS 235
Query: 267 VYSLSKDLGLPGFRVGAIYSND------DMVVAAATKMSSFGLVSSQTQYLLSALLSD-- 318
+ +SK +PG+R+G I +D D V+ + ++ L D
Sbjct: 236 LGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ---RILGPATIVQGALPDIL 292
Query: 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWV--DMRHLLRSNTFE 374
+ Q + LK + +L K G+ C K ++ V ++ +
Sbjct: 293 ENTPQEFFDGKISVLK-SNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELF---PEIK 348
Query: 375 AEMELWKKIVYDVKLNISPGSSCHCTE-PGWFRVCFANMSEDTLKLSMQRLKAFVD 429
+++ +K+ + + PGS P W R+ + + R+K F +
Sbjct: 349 DDVDFCEKLAREESVICLPGS---AFGLPNWVRITITVPESMLEE-ACSRIKEFCE 400
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 87/379 (22%), Positives = 155/379 (40%), Gaps = 46/379 (12%)
Query: 63 PDAAGFKRDGQSIFR---ELALFQDYH--GLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117
+R + R Q GLP ++A+ ++ RG + IV+T
Sbjct: 104 FPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQ--IVIT 161
Query: 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETA 177
+GA A + L+ L +PG+ L+ P YPG + L+ G ++P+ ++ I A
Sbjct: 162 SGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALE-ALGARVIPV---PVDEDGIDPEA 217
Query: 178 IEEAYQLAQKRHLKVKGVLVTNPS--NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235
+EEA K K V VT P+ NP G TMS L+ + + ++ +I D+ Y
Sbjct: 218 LEEALAQ-----WKPKAVYVT-PTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGE 271
Query: 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDMV-V 292
+ P + D RV +Y S SK L PG R+G + + +++
Sbjct: 272 LRYDGPPPPPL--KALDAP-------GRV--IYLGSFSKTL-APGLRLGYVVAPPELIEK 319
Query: 293 AAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352
K ++ SS +Q L+A L + + ++ ++ +R L+ L +
Sbjct: 320 LLRLKQAADLGPSSLSQAALAAFLLSGHYDR-HLRRLRREYARRRDALLEALAEYLPELA 378
Query: 353 KSN---AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC--HCTEPGWFRV 407
GLF W+++ + + L K +V GS+ R+
Sbjct: 379 TWTRPEGGLFLWLELPEGIDAREL-LAAALEKGVVVTP-----LGSAFSADGDPRNGLRL 432
Query: 408 CFANMSEDTLKLSMQRLKA 426
F++ SE+ ++ ++RL A
Sbjct: 433 SFSSPSEEEIEEGIKRLAA 451
|
Length = 459 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 6e-22
Identities = 89/354 (25%), Positives = 152/354 (42%), Gaps = 34/354 (9%)
Query: 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLP 141
+ GLP ++A+V+ E R N V + +TA T A + + L +PG+ L+P
Sbjct: 66 YGPSEGLPELREAIVK--REKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIP 123
Query: 142 TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
P YP + +K+ GV V + G+Q + + +K K K + V NP+
Sbjct: 124 GPSYPPYTGLVKFYGGVP-VEYRTIEEEGWQ------PDIDDIRKKITEKTKAIAVINPN 176
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261
NP G + L +++I E ++ +ISDEIY + VS + KD
Sbjct: 177 NPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTKDVP------- 228
Query: 262 NRVHIVYSLSKDLGLPGFRVGAIYSND-----DMVVAAATKMSSFGLV-SSQTQYLLSAL 315
V ++ LSK G+R+G IY D V A K++ L ++ Q+ A
Sbjct: 229 --VIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAG 286
Query: 316 LSDKKFTQNYISENKKRLKQRHRKLVSGL-EKAGISCLKSNAGLFCWVDMRHLLRSNTFE 374
L+ +Y+ E K+LK+R + L E GIS K + + + ++
Sbjct: 287 LTG---PMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPR----IEEGPWK 339
Query: 375 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
+ E ++++ + GS G FR+ F + L+ +M R + F+
Sbjct: 340 DDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFEEFM 392
|
Length = 398 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-20
Identities = 85/350 (24%), Positives = 156/350 (44%), Gaps = 40/350 (11%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPY 144
GL ++A+ + + G + +IV+TAGA++A L+ CLA E G+ L+P P
Sbjct: 68 GLAPLREAIAAWYARRFG--LDVAPERIVVTAGASAA--LLLACLALVERGDEVLMPDPS 123
Query: 145 YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL 204
YP +R V + FQ+T +E A+ + +GVL+ +PSNP
Sbjct: 124 YPC-NRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGVLLASPSNPT 176
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264
GT+++ +EL +V + + I DEIY G + + VS + + D V
Sbjct: 177 GTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAP-VSALSLGDD-----------V 224
Query: 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFT 322
+ S SK + G+R+G + + + V K++ F S+ Q+ +AL F
Sbjct: 225 ITINSFSKYFNMTGWRLGWLVVPEAL-VGTFEKLAQNLFICASALAQH--AALAC---FE 278
Query: 323 QNYISENKKR---LKQRHRKLVSGLEKAGISC-LKSNAGLFCWVDMRHLLRSNTFEAEME 378
+ ++ ++R K+R +V LE G + + + + D R + ++
Sbjct: 279 PDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAGDS-AA 337
Query: 379 LWKKIVYDVKLNISPGSSCHCTEPGWF-RVCFANMSEDTLKLSMQRLKAF 427
L + +++D + + PG P + R+ +A S L+ ++ RL
Sbjct: 338 LTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKL 386
|
Length = 388 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 85/372 (22%), Positives = 145/372 (38%), Gaps = 62/372 (16%)
Query: 78 ELALFQDYH------GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL 131
E A H GLP ++A S + G + ++ +T+G A M L
Sbjct: 53 EAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAI--SPEQVHITSGCNQAFWAAMVTL 110
Query: 132 AEPGEAFLLPTPYYPGFDRDLKWRT-GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190
A G+ +LP P+Y F+ + G+ V + C G + + A EA + R +
Sbjct: 111 AGAGDEVILPLPWY--FNHKMWLDMLGIRPVYLPCDEGPGL-LPDPAAAEALITPRTRAI 167
Query: 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY----SGTV-----FSSP 241
LVT P+NP G L+ L ++ I LI DE Y SG F+ P
Sbjct: 168 ----ALVT-PNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADP 222
Query: 242 GFVSIMEILKDRNCENTQVWNR--VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
W+ VH+ YS SK L G RVGA+ ++ + M
Sbjct: 223 D------------------WDDTLVHL-YSFSKSYALTGHRVGAVVASPARIAEIEKFMD 263
Query: 300 SFGLVSSQ-TQY-LLSAL--LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355
+ + + + Q + L L+D + + N+ + +R + + L ++
Sbjct: 264 TVAICAPRIGQIAVAWGLPNLAD------WRAGNRAEIARRRDAFRAVFARLPGWELLAS 317
Query: 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 415
F +V RH E+ +++ + + PG+ + G+ R+ FAN
Sbjct: 318 GAYFAYV--RHPFPD---RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVA 372
Query: 416 TLKLSMQRLKAF 427
+ ++RL+AF
Sbjct: 373 GIGELVERLRAF 384
|
Length = 386 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 9e-20
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 23/197 (11%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
GLPA ++A+ F ++ G V D +I++T G + A L +PG+ +LL P YP
Sbjct: 70 GLPALREAIAGFYAQRYG--VDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYP 127
Query: 147 GFDRDLKWRTGVEI-VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
L+ G VP+ + +Q+T +E + A G LV +P+NP G
Sbjct: 128 CNRHFLRLVEGAAQLVPV--GPDSRYQLTPALVE-RHWNADTV-----GALVASPANPTG 179
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265
T +SR+EL L + + HL+ DEIY G + S++E+ D
Sbjct: 180 TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDA-ASVLEVDDD-----------AF 227
Query: 266 IVYSLSKDLGLPGFRVG 282
++ S SK G+ G+R+G
Sbjct: 228 VLNSFSKYFGMTGWRLG 244
|
Length = 387 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 72/359 (20%), Positives = 141/359 (39%), Gaps = 48/359 (13%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF 148
A+ + + R IV G + L +PG+ ++ TP YP F
Sbjct: 63 DELYAAIAHWFKQ-RHQ-WEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPF 120
Query: 149 DRDLKWRTGVEIVPIQCTSLNG-FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT 207
+K G +++ +G ++I A+E+A+ +VK ++ NP NP G
Sbjct: 121 YNAIK-LNGRKVIENPLVEDDGRYEIDFDALEKAF-----VDERVKLFILCNPHNPTGRV 174
Query: 208 MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267
++ EL + + + +ISDEI++ V + + + + + +
Sbjct: 175 WTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASL-------SERFADNSITL 227
Query: 268 YSLSKDLGLPGFRVG-AIYSNDDMVVAAATKM--------SSFGLVSSQTQY-----LLS 313
S SK L G + I SN ++ ++ S+ G+++++ Y L
Sbjct: 228 TSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLD 287
Query: 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTF 373
LL Y+ +N+ + K + G+ + W+D R L
Sbjct: 288 ELL-------EYLKDNRDYVADFLNKHLP-----GVKVTEPQGTYLAWLDCREL----GL 331
Query: 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432
+ EL + ++ + K+ +SPGS+ G+ R+ FA L+ +++RLK +
Sbjct: 332 DDS-ELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFA-CPRAILEEALERLKRALKKRR 388
|
Length = 388 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 85/360 (23%), Positives = 161/360 (44%), Gaps = 44/360 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY-- 144
G PA +KA++ + R N + + ++I + GA A + E G+ ++P PY
Sbjct: 71 GTPALRKAIIAKLE--RRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWV 128
Query: 145 -YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
YP D+ V + C GF++T A+E A + + +++ PSNP
Sbjct: 129 SYP----DMVLANDGTPVIVACPEEQGFKLTPEALEAAITP------RTRWLILNAPSNP 178
Query: 204 LGTTMSRNELNLLVNIITE-KNIHLISDEIYSGTVFSS---PGFVSIMEILKDRNCENTQ 259
G SR EL L +++ ++ +++D+IY F P ++ L+D
Sbjct: 179 TGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD------- 231
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQ-YLLSALLS 317
RV + +SK + G+R+G D++ A S S SS +Q +AL
Sbjct: 232 ---RVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG 288
Query: 318 DKKFTQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVDMRHLLRSNT---- 372
D Q++++E+ KQR ++ L G+SCL + + +V+ L+ T
Sbjct: 289 D----QSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGK 344
Query: 373 -FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
E + ++ ++ + + G++ + P +FR+ A S +TL+ + R++ V ++
Sbjct: 345 VLETDQDVVLYLLDSAGVAVVQGTA-YGLSP-YFRLSIAT-SLETLEEACARIERAVAAL 401
|
Length = 402 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 3e-18
Identities = 72/323 (22%), Positives = 146/323 (45%), Gaps = 34/323 (10%)
Query: 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGF 171
+I++T GA+ A + M + PG+ L+ P + + + GV VP+ T N F
Sbjct: 82 DEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVP-VPVATTLENEF 140
Query: 172 QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDE 231
++ IE A K K +L+ +P+NP G ++++EL + I+ + ++ ++SDE
Sbjct: 141 KVQPAQIEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDE 194
Query: 232 IYSGTVFSSPGFVSIMEI--LKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD 289
IY+ + + S I +++R ++ SK + G+R+G I +
Sbjct: 195 IYAELTYDEA-YTSFASIKGMRERTI----------LISGFSKGFAMTGWRLGFIAAPVY 243
Query: 290 MVVAAATKMSSFGLVSSQT--QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347
A K+ + ++ + T Q+ A L + + + + ++R V+ +
Sbjct: 244 F-SEAMLKIHQYSMMCAPTMAQF---AALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI 299
Query: 348 GISCLKSNAGLFCWVDMRHL-LRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 406
G++C + + + L S F ++ L +K+ + PGS + G+ R
Sbjct: 300 GLTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVA------VVPGSVFGESGEGFIR 353
Query: 407 VCFANMSEDTLKLSMQRLKAFVD 429
+A S + L+ +M+R+K FV+
Sbjct: 354 CSYAT-SLEQLQEAMKRMKRFVE 375
|
Length = 378 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-17
Identities = 75/301 (24%), Positives = 128/301 (42%), Gaps = 52/301 (17%)
Query: 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLM-FCLAEPGEAFLL 140
+ D G P +KA+ F+ R D S I LT GA+S + L+ + +P + ++
Sbjct: 111 YTDSAGYPFVRKAVAAFIER-RDGVPK-DPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI 168
Query: 141 PTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQI------------TETAIEEAYQLAQKR 188
P P YP + T L G Q+ + +EEAY+ A +
Sbjct: 169 PIPQYP-------------LYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRN 215
Query: 189 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS-SPGFVSIM 247
+ + ++V NP NP G ++R+ + ++ EK I L++DE+Y ++ F+S
Sbjct: 216 GITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFR 275
Query: 248 EILKDRNCENTQVWNRVHIV--YSLSKDL-GLPGFRVG--AIYSNDDMVVAAATKMSSFG 302
++L + E V +V +S SK + G G R G + + V K++S
Sbjct: 276 KVLLELPAEYNT---DVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASIN 332
Query: 303 LVSSQTQYLLSALL---------SDKKFTQNY--ISENKKRLKQRHRKLVSGLEKA-GIS 350
L S+ L++ L+ S + + I + LK+R L L K G+S
Sbjct: 333 LCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTS---LKRRAELLTDELNKIEGVS 389
Query: 351 C 351
C
Sbjct: 390 C 390
|
Length = 481 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 44/332 (13%)
Query: 58 WLDRN----PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113
L N ++ +L + D + AL E+ D
Sbjct: 26 KLSSNENPYGPPPKVIEAIRAALDKLNRYPDP-DYRELRAALAEYYG-------VVDPEN 77
Query: 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQI 173
+++ G+ E L+ EPG+ L+P P + ++ + G E+V + L F++
Sbjct: 78 VLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQ-LAGAEVVKVP---LKEFRL 133
Query: 174 TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233
AI A + K+ V + NP+NP GT + R EL L+ + E + ++ DE Y
Sbjct: 134 DLDAILAAI----RDKTKL--VFLCNPNNPTGTLLPREELRALLEALPEGGL-VVIDEAY 186
Query: 234 SGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA 293
FS S +E+LK + ++ + SK GL G RVG +N +++ A
Sbjct: 187 IE--FSPE---SSLELLKYPPN--------LIVLRTFSKAFGLAGLRVGYAIANPELIAA 233
Query: 294 AATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353
F VSS A L D +Y+ E+ +R+++ +L + L+ G+ +
Sbjct: 234 LNKVRPPFN-VSSPALAAAIAALRD----ADYLEESVERIREERERLYAALKALGLFGVF 288
Query: 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVY 385
+ F V + + L KK +
Sbjct: 289 PSQANFVLVRVP---DAEAAALAEALLKKGIL 317
|
Length = 356 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 4e-17
Identities = 77/334 (23%), Positives = 140/334 (41%), Gaps = 34/334 (10%)
Query: 78 ELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGE- 136
E++ + G A ++A+ + G K+ D +++ +AG+ A +P E
Sbjct: 28 EVSQYPSALGTKALREAISGWFERRFGVKLDPDA-QVLPSAGSKEAIFHFPLVFIDPEED 86
Query: 137 --AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194
+ TP YP ++R + G E ++ +GF + +E++ K+
Sbjct: 87 RRRVIFGTPGYPVYERGALF-AGGEPTAVKLKKEDGFLLRLEKVEKSIL----EETKI-- 139
Query: 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254
V + P NP G T R+ L + + E I L SDE Y+ F P S +E+ +
Sbjct: 140 VWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPP-HSALEVGIEN- 197
Query: 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQ-TQYLLS 313
V +SLSK G+ G+R G + ++ ++ ++FG+ S Q
Sbjct: 198 ---------VLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAK 248
Query: 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTF 373
A SD N++ E +K K++ + K G+ L +A + WV + + + +
Sbjct: 249 AAWSD----DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSGIDAKDY 304
Query: 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 407
+ L IV ++PG + E G+ RV
Sbjct: 305 ALRL-LENGIV------VAPGENFGSGEEGYVRV 331
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 78/323 (24%), Positives = 150/323 (46%), Gaps = 33/323 (10%)
Query: 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT--SLNGF 171
+VL +G + A + L + G+ L+P P +P ++ T + I+ +
Sbjct: 107 VVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYE------TVCKAYGIEMRFYNCRPE 160
Query: 172 QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDE 231
+ E ++E +L R K +++TNPSNP G+ SR + ++ + E + LISDE
Sbjct: 161 KDWEADLDEIRRLVDDR---TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDE 217
Query: 232 IYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV 291
IY+G VF+ F S+ + +T V RV I+ +K+L +PG+R+G + D
Sbjct: 218 IYAGMVFNGATFTSVADF-------DTTV-PRV-ILGGTAKNLVVPGWRLGWLLLVDPHG 268
Query: 292 VAA--ATKMSSFGLV----SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345
M G++ S Q L L Q ++ + +L++ L + +
Sbjct: 269 NGGDFLDGMKRLGMLVCGPCSVVQAALGEALL--NTPQEHLEQIVAKLEEGAMVLYNHIG 326
Query: 346 KA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404
+ G+S +F + L + ++++E ++K++ + + + PG H PG+
Sbjct: 327 ECIGLSPTMPRGSMFLMSRL-DLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM--PGF 383
Query: 405 FRVCFANMSEDTLKLSMQRLKAF 427
R+ + E L+ +++R+KAF
Sbjct: 384 TRLTISRPVE-VLREAVERIKAF 405
|
Length = 412 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 4e-16
Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 33/347 (9%)
Query: 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT-AGATSANETLMFCLAEPGEAFLLPTP 143
Y G+ A+++A+ ++ G V D VL+ G+ + PG+ L+P P
Sbjct: 66 YEGMLAYRQAVADWYKRRFG--VELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDP 123
Query: 144 YYPGFDRDLKWRTGV-EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSN 202
YP + + G +P++ NGF AI E +A+ K K + + P+N
Sbjct: 124 GYPVYRIGTLFAGGEPYEMPLK--EENGFLPDFDAIPED--IAK----KAKLMFINYPNN 175
Query: 203 PLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQV 260
P G LV E NI + D YS F S +E+ KD E
Sbjct: 176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIE---- 231
Query: 261 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK 320
+SLSK + G+R+G N D+ +A K+ + + S Q + A ++
Sbjct: 232 ------FHSLSKTYNMTGWRIGMAVGNADL-IAGLGKVKT-NVDSGVFQAIQYAAIAALN 283
Query: 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELW 380
Q+ + E +K ++R L+ L+K GI K A + WV + S F A +
Sbjct: 284 GPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEGYTSAEFAARLLEE 343
Query: 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427
+V ++PG G+ R+ + ++ L+ ++ R+K
Sbjct: 344 TGVV------VTPGVGFGEYGEGYIRISL-TVPDERLEEAVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 5e-16
Identities = 77/360 (21%), Positives = 146/360 (40%), Gaps = 59/360 (16%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+P ++AL ++S + G V +I +T+ A L PG+ + TP +P
Sbjct: 62 GIPELREALARYVSRLHG--VATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWP 119
Query: 147 GFDRDLKWRTG-VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
K V VP+ G+ + + A + + + + +P+NP G
Sbjct: 120 NLVAAPKILGARVVCVPLDFGG-GGWTLDLDRLLAAITP------RTRALFINSPNNPTG 172
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVF----SSPGFVSIMEILKDRNCENTQVW 261
T SR++L ++ + +++DE+Y + +P F+ I E D
Sbjct: 173 WTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE--PD--------- 221
Query: 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG-LVSSQTQYLLSALLSDKK 320
+R+ V S SK+ + G+R+G + VA L+ +Y S +
Sbjct: 222 DRIIFVNSFSKNWAMTGWRLGWL-------VAPPALGQVLEKLI----EYNTSCVAQ--- 267
Query: 321 FTQ-----------NYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLL 368
F Q ++++E RL++ LV L G+ K + ++ +
Sbjct: 268 FVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAF------F 321
Query: 369 RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
R + L K++V + L ++PG++ G+ R CFA L +++RL+ F+
Sbjct: 322 RIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFL 380
|
Length = 382 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 8e-16
Identities = 87/371 (23%), Positives = 155/371 (41%), Gaps = 58/371 (15%)
Query: 78 ELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCLAEPGE 136
E +Q G+P +A+ + + + N + + IV+TAG+ A + + +PG+
Sbjct: 57 ENHKYQAVQGIPPLLEAITQKLQQ--DNGIELNNEQAIVVTAGSNMAFMNAILAITDPGD 114
Query: 137 AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196
+L TPYY F+ ++ PI + + +Q+ AIE+A K + ++
Sbjct: 115 EIILNTPYY--FNHEMAITMA-GCQPILVPTDDNYQLQPEAIEQAITP------KTRAIV 165
Query: 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS-----SPGFVSIMEILK 251
+P+NP G L + I E I+ ISDE Y + SPG SI
Sbjct: 166 TISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPG--SIPG--- 220
Query: 252 DRNCENTQVWNRVHIV--YSLSKDLGLPGFRVGAIYSNDDMVVA-----AATKMSSFGLV 304
N H + YSLSK G +R+G Y MV+ A K+ L+
Sbjct: 221 ---SGN-------HTISLYSLSKAYGFASWRIG--Y----MVIPIHLLEAIKKIQDTILI 264
Query: 305 SSQ--TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC--LKSNAGLFC 360
+QY L K +Y ++ + Q + L+ L + C +N +C
Sbjct: 265 CPPVVSQYAALGALQVGK---SYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYC 321
Query: 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420
L+ NT + EL K+++ + ++ + PG++ + R+ + + + T K
Sbjct: 322 ------FLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEG 375
Query: 421 MQRLKAFVDSI 431
++RL + +I
Sbjct: 376 IERLVQGLKTI 386
|
Length = 389 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 76/340 (22%), Positives = 131/340 (38%), Gaps = 59/340 (17%)
Query: 108 TFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIV--PIQC 165
D IV G + + L PGE ++ TP YP F +K G E+V P++
Sbjct: 80 QIDPEWIVFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAVK-SNGRELVLNPLKL 138
Query: 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNI 225
++ +E L K + +L+ +P NP+G +R EL L + N+
Sbjct: 139 DP-GRYRFD---LE---DLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAELCLRHNV 191
Query: 226 HLISDEIYSGTVFSSPG-----FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFR 280
++SDEI++ V+ P S+ + R + S K + G
Sbjct: 192 VVVSDEIHADLVY--PPNKHIPLASLSPEIA----------ERTVTLLSPGKTFNIAGLN 239
Query: 281 VG-AIYSNDDM---VVAAATKM-----SSFGLVSSQTQY-----LLSALLSDKKFTQNYI 326
+ AI N ++ AA ++ + FG V+ + Y L ALL+ Y+
Sbjct: 240 ISFAIIPNPELRRAFQEAAQRVHIQHGNLFGYVAFEAAYREGEPWLDALLA-------YL 292
Query: 327 SENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYD 386
N+ +++ K I A W+D R L + +L +
Sbjct: 293 RGNRDLVEEFIAK-----RLPQIRVRPPEATYLAWLDCRALGLDDA-----DLRAFFIEQ 342
Query: 387 VKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426
L ++PG S G+ R+ F TL+ +++RL+
Sbjct: 343 AGLGLNPGISFGDGGSGFMRLNFG-CPRSTLEQALERLRQ 381
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-15
Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 61/340 (17%)
Query: 78 ELALFQDYH------GLPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFC 130
E+A D H G+P ++A+ + + R + V D S+ ++T G+ LM
Sbjct: 53 EVAQRPDTHGYSTSRGIPRLRRAISRWYQD-RYD-VDIDPESEAIVTIGSKEGLAHLMLA 110
Query: 131 LAEPGEAFLLPTPYYP----GF---DRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQ 183
+ G+ L+P P YP G ++ V +V ++ F E AI E+Y
Sbjct: 111 TLDHGDTVLVPNPSYPIHIYGAVIAGAQVR---SVPLVE----GVDFFNELERAIRESYP 163
Query: 184 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243
K K +++ PSNP + +V + ++ ++ D Y+ V+
Sbjct: 164 -------KPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA 216
Query: 244 VSIMEI--LKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS- 300
SIM++ KD E ++LSK + G+R+G + N ++ V+A ++ S
Sbjct: 217 PSIMQVPGAKDVAVE----------FFTLSKSYNMAGWRIGFMVGNPEL-VSALARIKSY 265
Query: 301 --FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGL 358
+G + ++AL D Q + + ++ K+R LV GL +AG A +
Sbjct: 266 HDYGTFTPLQVAAIAALEGD----QQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASM 321
Query: 359 FCWVDM----RHLLRSNTFEAEMELWKKIVYDVKLNISPG 394
+ W + + +E KK++ + K+ +SPG
Sbjct: 322 YVWAKIPEPYAAM-------GSLEFAKKLLNEAKVCVSPG 354
|
Length = 395 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 6e-15
Identities = 77/356 (21%), Positives = 147/356 (41%), Gaps = 44/356 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G + ++A+ + G + +VL +G + A E + LA G+ L+P P +P
Sbjct: 74 GALSAREAIASYYHNPDG---PIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFP 130
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ R L G+E+ ++I + QL K ++V NPSNP G+
Sbjct: 131 LY-RTLAESMGIEVKLYNLLPDKSWEI------DLKQLESLIDEKTAALVVNNPSNPCGS 183
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
SR L ++ + + + +I+DEIY VFS F + + ++ V +
Sbjct: 184 VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPVASL-------SSNV--PILS 234
Query: 267 VYSLSKDLGLPGFRVGAIYSND---------DMVVAAATKMSSFGLVSSQT--QYLLSAL 315
L+K +PG+R+G I +D D +V + + ++ T Q L ++
Sbjct: 235 CGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQR-----ILGPCTIVQGALPSI 289
Query: 316 LSDKKFTQNYISENKKRLKQRHRKLVSGL-EKAGISCLKSNAGLFCWVDMRHLLRSNTFE 374
L + Q Y L+ L G+ + + ++ V + + F+
Sbjct: 290 L--LRTPQEYFDGTLSVLESNAMLCYGALAAVPGLQPVMPSGAMYMMVGIE-MEHFPEFK 346
Query: 375 AEMELWKKIVYDVKLNISPGSSCHCTE-PGWFRVCFANMSEDTLKLSMQRLKAFVD 429
++E ++++ + + PGS C E PG+FRV + + R++ F +
Sbjct: 347 NDVEFTERLIAEQSVFCLPGS---CFEYPGFFRVVLTVPVVMMEE-ACSRIQEFCE 398
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 8e-15
Identities = 76/342 (22%), Positives = 152/342 (44%), Gaps = 30/342 (8%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+P ++A+ E+ + G V D +++TAGA A L E G+ ++P P +
Sbjct: 71 GIPELREAIAEYYKKFYG--VDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFV 128
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ D K + + I N FQ +E +L KR + +++ P+NP G
Sbjct: 129 CYVEDAKI-AEAKPIRIPLREENEFQPD---PDELLELITKR---TRMIVINYPNNPTGA 181
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
T+ + + +I + NI+++SDE Y ++ +++ D NT + N
Sbjct: 182 TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPD----NTILAN---- 233
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQN 324
S SK + G+R+G + + + V+ K+ ++ G V+S Q L K+ +
Sbjct: 234 --SFSKTFAMTGWRLGFVIAPEQ-VIKDMIKLHAYIIGNVASFVQIAGIEALRSKE-SWK 289
Query: 325 YISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
+ E +K +R + ++ L++ I + + + ++ S+ AE L K
Sbjct: 290 AVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKAR 349
Query: 384 VYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 425
V + PG++ G+ R+ +A E ++ +M+R++
Sbjct: 350 VV-----VIPGTAFGKAGEGYIRISYATSKEKLIE-AMERME 385
|
Length = 391 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 95/366 (25%), Positives = 157/366 (42%), Gaps = 64/366 (17%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
GL ++A+ E++S R T I LTAG A E +M LA+PG LLP P YP
Sbjct: 95 GLLPARRAIAEYLS--RDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYP 152
Query: 147 GFDRDLKWRT---GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
++ R G+E+ G+++ +E LA + + +++ NP+NP
Sbjct: 153 LYEA----RAVFSGLEVRHFDLLPERGWEVDLEGVEA---LADENTV---AMVIINPNNP 202
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G+ S L + + I +I+DE+Y F S FV + V+
Sbjct: 203 CGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPM------------GVFGE 250
Query: 264 VHIVY---SLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSD-K 319
V V S+SK +PG+R+G I + D + TK +V S YL + +D
Sbjct: 251 VAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETK-----VVDSIRNYL--NISTDPA 303
Query: 320 KFTQN---YISENKKRLKQRHRKLVSGLEKA---------GISCL----KSNAGLFCWV- 362
F Q I N K ++ K + L++ I C+ K +F V
Sbjct: 304 TFVQGAIPQIIANTK--EEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVK 361
Query: 363 -DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 421
D+ L + + +M+ K+ + + + PGS+ W R+ FA + +L+ +
Sbjct: 362 LDLSCL---SGIKDDMDFCCKLAKEESVVVLPGSALGMKN--WLRITFA-IDPPSLEDGL 415
Query: 422 QRLKAF 427
+RLK+F
Sbjct: 416 ERLKSF 421
|
Length = 430 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 3e-14
Identities = 60/213 (28%), Positives = 89/213 (41%), Gaps = 49/213 (23%)
Query: 99 MSEIRGNKVTFDTSKIVLTAGATSA----------NETLMFCLAEPGE--AFLLP--TPY 144
E+ G + + G T+A N L + G+ A + P TPY
Sbjct: 149 RQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLL-----KAGDKIALMTPIFTPY 203
Query: 145 Y--PGFDR-DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
P R DL E+V I N +Q ++ +E+ L +K + + NPS
Sbjct: 204 LEIPELPRYDL------EVVHINADEENEWQYPDSELEK---LRDP---SIKALFLVNPS 251
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHL--ISDEIYSGTVFSSPGFVSIMEILKDRNCENTQ 259
NP MS L + +I+ EK L I+D++Y GT F F S+ +L NT
Sbjct: 252 NPPSVAMSDESLEKIADIVNEKRPDLMIITDDVY-GT-F-VDDFRSLFAVLP----YNTI 304
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVV 292
+VYS SK G G+R+G I ++D V
Sbjct: 305 ------LVYSFSKYFGATGWRLGVIALHEDNVF 331
|
Length = 527 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 33/236 (13%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G P ++ +++ + D + ++TAGAT + +M PG+ + P P Y
Sbjct: 67 GFPELRELILKDLG--------LDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYL 118
Query: 147 GFDRDLKWRTGVEI--VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL 204
D R G E+ VPI + +++T ++E + ++ + + +P NPL
Sbjct: 119 IIDNFAS-RFGAEVIEVPIY-SEECNYKLTPELVKENMD----ENTRL--IYLIDPLNPL 170
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264
G++ + E+ I + + L+ D Y F + + E+T
Sbjct: 171 GSSYTEEEIKEFAEIARDNDAFLLHDCTYR-------DFAREHTLAAEYAPEHTVT---- 219
Query: 265 HIVYSLSKDLGLPGFRVGAIYSNDDMV-VAAATKMSSFGLVSSQTQYLLSALLSDK 319
YS SK G+ G R+GA+ + D++ V + ++ G + Q A L K
Sbjct: 220 --SYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVINDLG-TNVIAQEAAIAGLKVK 272
|
Length = 380 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 78/344 (22%), Positives = 147/344 (42%), Gaps = 30/344 (8%)
Query: 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYY 145
G+P A+ E + G V + ++ +T+G T A + L PG+ +L P+Y
Sbjct: 91 FGVPELNSAIAERFKKDTGLVVDPEK-EVTVTSGCTEAIAATILGLINPGDEVILFAPFY 149
Query: 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
++ L G +I + + F + E ++ A+ K + +L+ P NP G
Sbjct: 150 DSYEATLS-MAGAKIKTVTLRPPD-FAVPEDELKAAFTS------KTRAILINTPHNPTG 201
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265
+R EL L+ ++ E ++ +DE+Y F +S+ + ++ R
Sbjct: 202 KMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASL--------PGMYERTV 252
Query: 266 IVYSLSKDLGLPGFRVGAIYSNDDMV--VAAATKMSSFGLVSSQTQYLLSALLSDKKFTQ 323
+ SL K L G+++G + + V A +F ++ Q+ A L + +
Sbjct: 253 TMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA-TATPMQWAAVAAL---RAPE 308
Query: 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
+Y E K+ + LV GL++ G S+ F VD FE ++ + +
Sbjct: 309 SYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPF----GFENDIAFCEYL 364
Query: 384 VYDVKLNISPGSSCHCT-EPGWFRVCFA-NMSEDTLKLSMQRLK 425
+ +V + P S + E G V FA E+TL+ +++R+K
Sbjct: 365 IEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMK 408
|
Length = 413 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 22/198 (11%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G + ++++ S+ ++F ++I+ T GA + + +PG+ ++ PY+
Sbjct: 67 GDVELIEEIIKYYSKNYD--LSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFT 124
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ ++ G I+ ++ +GFQI +E K K +++ +P+NP G
Sbjct: 125 PYKDQIEMVGGKPII-LETYEEDGFQINVKKLEALITS------KTKAIILNSPNNPTGA 177
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI--MEILKDRNCENTQVWNRV 264
S+ L + I E ++ +ISDE+Y G F FV + + + +R
Sbjct: 178 VFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERTI--------- 227
Query: 265 HIVYSLSKDLGLPGFRVG 282
S SKD + G+R+G
Sbjct: 228 -TFGSFSKDFAMTGWRIG 244
|
Length = 384 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 6e-13
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 30/208 (14%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
GLP ++A+ E++S K++ D + +T+G T A + + LA PG LLP P +P
Sbjct: 74 GLPQARRAIAEYLSRDLPYKLSLD--DVFITSGCTQAIDVALSMLARPGANILLPRPGFP 131
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
++ +R +E+ + G+++ A+E LA + + +++ NP NP G
Sbjct: 132 IYELCAAFR-HLEVRYVDLLPEKGWEVDLDAVE---ALADQNTV---ALVIINPGNPCGN 184
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV------SIMEILKDRNCENTQV 260
S L + + I +I+DE+Y F S FV SI+ +L
Sbjct: 185 VYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLT--------- 235
Query: 261 WNRVHIVYSLSKDLGLPGFRVGAIYSND 288
+ SLSK +PG+R+G + D
Sbjct: 236 ------LGSLSKRWIVPGWRLGWFVTTD 257
|
Length = 409 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 69.0 bits (168), Expect = 1e-12
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG 147
LPA ++A+ ++M+ +K+T I LTAG E + LA P LLP P +P
Sbjct: 111 LPA-RRAVADYMNRDLPHKLT--PEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPH 167
Query: 148 FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT 207
+D + +G+E+ ++I IE +A + + ++V NP+NP G
Sbjct: 168 YDARAAY-SGLEVRKFDLLPEKEWEIDLEGIE---AIADENTV---AMVVINPNNPCGNV 220
Query: 208 MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267
S + L + + I +ISDE+Y T+F FVS+ + V +
Sbjct: 221 YSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS---------IVPVLTL 271
Query: 268 YSLSKDLGLPGFRVGAIYSNDDMVVAAATKM 298
+SK +PG+++G I ND V TK+
Sbjct: 272 AGISKGWVVPGWKIGWIALNDPEGVFETTKV 302
|
Length = 462 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 85/364 (23%), Positives = 148/364 (40%), Gaps = 65/364 (17%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYY 145
GLP ++A+ R + D +++++T+GAT A + L EPG+ +L P Y
Sbjct: 64 GLPELRQAVAA--HYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLY 121
Query: 146 PGFDRDLKWRTGV-EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL 204
+ ++ GV +V ++ +++ A+ A+ + K VL+ NP NP
Sbjct: 122 DAYLPLIRRAGGVPRLVRLEPPH---WRLPRAALAAAFSP------RTKAVLLNNPLNPA 172
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQVWN 262
G R EL LL + I DE++ VF + +M + +++R
Sbjct: 173 GKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERT-------- 224
Query: 263 RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFT 322
V I S K L G++VG V AA + +++ Q+L FT
Sbjct: 225 -VKI-GSAGKIFSLTGWKVG-------FVCAAPPLLR---VLAKAHQFL--------TFT 264
Query: 323 -----QN-----------YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH 366
Q Y + L + +L +GL + G L S F VD+
Sbjct: 265 TPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAP 324
Query: 367 LLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP--GWFRVCFANMSEDTLKLSMQRL 424
L + E ++ +++V + + P S+ + +P R CFA + TL +++RL
Sbjct: 325 LGLA---EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERL 380
Query: 425 KAFV 428
A
Sbjct: 381 AAAR 384
|
Length = 387 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 33/283 (11%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+ FK+A +M ++ G K ++++ + G+ A L C PG+ L+ P YP
Sbjct: 82 GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYP 141
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAI-EEAYQLAQKRHLKVKGVLVTN-PSNPL 204
K+ G E+ + N F +I ++ + A+ +L N P+NP
Sbjct: 142 VTGTHTKYYGG-EVYNLPLLEENNFLPDLDSIPKDIKEKAK--------LLYLNYPNNPT 192
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS--PGFVSIMEILKDRNCENTQVWN 262
G ++ +V+ E NI ++ D Y+ F F+S+ K+ E
Sbjct: 193 GAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSV-PGAKEVGVE------ 245
Query: 263 RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQ---TQYLLSALLSDK 319
++SLSK + G+R+ + N+ +V A AT + S Q Q L
Sbjct: 246 ----IHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNND--SGQFIAIQKAGIYALDHP 299
Query: 320 KFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 362
+ T+ + +++ +R KLV L + G + +V
Sbjct: 300 EITE----KIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYV 338
|
Length = 410 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-12
Identities = 84/350 (24%), Positives = 154/350 (44%), Gaps = 35/350 (10%)
Query: 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG 147
LPA ++A+ +++S +++ D + LT G A E ++ LA P LLP P +P
Sbjct: 77 LPA-RRAIADYLSNDLPYQLSPD--DVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPD 133
Query: 148 FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT 207
+ + +EI G+++ A+E +A + + +++ NP NP G+
Sbjct: 134 VETYAIFHH-LEIRHFDLLPEKGWEVDLDAVE---AIADENTI---AMVIINPGNPCGSV 186
Query: 208 MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267
S LN + + I +I+DE+Y VF S FV M + + V V +
Sbjct: 187 YSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVP-MGLF------ASIV--PVITL 237
Query: 268 YSLSKDLGLPGFRVGAIYSNDD----MVVAAATKMSSFGLVSSQTQYLLSALLSD--KKF 321
S+SK +PG+ +G + + D + A + + + A + + +K
Sbjct: 238 GSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKT 297
Query: 322 TQNYISENKKRLKQRHRKLVSGLEKAGISCL----KSNAGLFCWVDMRHLLRSNTFEAEM 377
T+++ S+ L+ L++ I C+ K+ F V + LL + E +M
Sbjct: 298 TEDFFSKTINILRAALAFCYDKLKE--IPCIMCPQKAEGAFFALVKLNLLLLED-IEDDM 354
Query: 378 ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427
E K+ + L I PG + W R+ FA + + +L+ + RLK+F
Sbjct: 355 EFCLKLAKEESLIILPGVTVGLKN--WLRITFA-VEQSSLEDGLGRLKSF 401
|
Length = 409 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 70/287 (24%), Positives = 112/287 (39%), Gaps = 36/287 (12%)
Query: 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA-GATSANETLMFCLAEPGEAFLLPTP 143
Y G+ F+KA+ ++ G V D V++ G+ + PG+ L+P P
Sbjct: 68 YEGMLEFRKAVADWYKRRFG--VELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDP 125
Query: 144 YYP------GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197
YP F G E + NGF AI E +A+K K + +
Sbjct: 126 GYPVYKIGTIF-------AGGEPYFMPLKEENGFLPDLDAIPED--VAKK----AKLMFI 172
Query: 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNC 255
P+NP G +V+ + +I + D YS + S +E+ KD
Sbjct: 173 NYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGI 232
Query: 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSAL 315
E +SLSK + G+R+G N D++ A K+ S + S Q + A
Sbjct: 233 E----------FHSLSKTYNMTGWRIGFAVGNADLI-AGLGKVKS-NVDSGVFQAIQEAG 280
Query: 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 362
++ Q + E +K ++R LV GL K G+ A + W
Sbjct: 281 IAALNGPQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWA 327
|
Length = 385 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-12
Identities = 89/387 (22%), Positives = 153/387 (39%), Gaps = 90/387 (23%)
Query: 70 RDGQSIFRELALFQ-DY---HGLPAFKKA---LVEFMSEIRGNKVTFDTSKIVLTAGATS 122
++ ++ ++EL + Y G P FK+A L + + I+ T GAT
Sbjct: 42 KNPEAFYQELGQKKLTYGWIEGSPEFKEAVASLYQNVKP----------ENILQTNGATG 91
Query: 123 ANETLMFCLAEPGEAFLLPTPYY------P---GFDRDLKWRTGVEIVPIQCTSLNGFQI 173
AN +++ L EPG+ + P Y P G + D W+ E NG+
Sbjct: 92 ANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDY-WQLKEE---------NGWL- 140
Query: 174 TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233
++E +L + K + + N +NP G M R L +V I + +++SDE+Y
Sbjct: 141 --PDLDELRRLVR---PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVY 195
Query: 234 SGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA 293
SI + L ++ S+SK LPG RVG I +N++++
Sbjct: 196 RPLD-EDGSTPSIAD-LYEKGIS----------TNSMSKTYSLPGIRVGWIAANEEVIDI 243
Query: 294 AAT----KMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSG------ 343
M G+ L AL E++ + +R+RK+V
Sbjct: 244 LRKYRDYTMICAGVFDDMLASL--AL------------EHRDAILERNRKIVRTNLAILD 289
Query: 344 --LEK-AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400
+ K +S +K A +V + + S F ++L K+ V L PG+
Sbjct: 290 EWVAKEPRVSYVKPKAVSTSFVKLDVDMPSEDF--CLKLLKE--TGVLL--VPGN--RFD 341
Query: 401 EPGWFRVCFANMSEDTLKLSMQRLKAF 427
G R+ + +TLK +++L F
Sbjct: 342 LEGHVRIGYCC-DTETLKKGLKKLSEF 367
|
Length = 373 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 69/281 (24%), Positives = 108/281 (38%), Gaps = 38/281 (13%)
Query: 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVL-TAGATSANETLMFCLA-EPGEAFLLPTP 143
G P ++A+V+++ RG V VL G L L PG+ ++P
Sbjct: 56 WGTPELREAIVDWLERRRG--VPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPEL 113
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
YP ++ G + A + + + + +P NP
Sbjct: 114 AYPTYEV-------------------GALLAGATPVAADDPTELDPVGPDLIWLNSPGNP 154
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G +S +EL +V E+ + SDE Y + + IL R C
Sbjct: 155 TGRVLSVDELRAIVAWARERGAVVASDECYLELGWEG----RPVSILDPRVCGGDH--TG 208
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVA---AATKMSSFGLVSSQTQYLLSALLSDKK 320
+ V+SLSK L G+R G + + D +VA K + +V + Q + A L D
Sbjct: 209 LLAVHSLSKRSNLAGYRAGFV-AGDPALVAELLTVRKHAGL-MVPAPVQAAMVAALGDD- 265
Query: 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 361
+++E K R R +L LEKAG S AGL+ W
Sbjct: 266 ---GHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLW 303
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 44/205 (21%)
Query: 99 MSEIRGNKVTFDTSKIVLTAGATSAN----ETLMFC-LAEPGE--AFLLP--TPYY--PG 147
+ E+ GNK + G T+A ++L L + G+ A + P TPY P
Sbjct: 143 IQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE 202
Query: 148 FDR-DLKWRTGVEIVPIQCTSLNG-----FQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
R D E+V I+ + +Q + +E+ R +K + V NPS
Sbjct: 203 LPRYDF------EVVRIKADEMTEDGTHTWQYPDKELEKL------RDPSIKALFVVNPS 250
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHL--ISDEIYSGTVFSSPGFVSIMEILKDRNCENTQ 259
NP MS + +V+I+ L ++D++Y GT F S+ L NT
Sbjct: 251 NPPSVAMSDESIEKIVDIVANDRPDLMILTDDVY-GTF--VDDFRSLFAELP----YNTI 303
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAI 284
VYS SK G G+R+G I
Sbjct: 304 ------GVYSFSKYFGATGWRLGTI 322
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 58/262 (22%), Positives = 113/262 (43%), Gaps = 28/262 (10%)
Query: 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKW----RTGVEIVPIQCTS 167
+++++T GAT A + L EPG+ LL PYY + + R V +VP
Sbjct: 86 TEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVP----D 141
Query: 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHL 227
GF + A+ A + + ++V +P NP GT ++ EL + + E ++ +
Sbjct: 142 GRGFALDLDALRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLV 195
Query: 228 ISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSN 287
I+DE+Y VF + + + + R + S +K + G+++G
Sbjct: 196 ITDEVYEHLVFDGARHLPLATL--------PGMRERTVTISSAAKTFNVTGWKIGWACGP 247
Query: 288 DDMV--VAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345
++ V AA + ++ + + Q ++ L + +++ + L+ + +L +GL
Sbjct: 248 APLIAAVRAAKQYLTY-VGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLA 303
Query: 346 KAGISCLKSNAGLFCWVDMRHL 367
+AG S F D R L
Sbjct: 304 EAGFEVHDSAGTYFLCADPRPL 325
|
Length = 387 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 89/375 (23%), Positives = 152/375 (40%), Gaps = 70/375 (18%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+P ++A + + G K+ DT ++V T G+ + + PG+ L P P YP
Sbjct: 69 GIPGLRRAQAAYYARRFGVKLNPDT-QVVATLGSKEGFANMAQAITAPGDVILCPNPSYP 127
Query: 147 ----GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN-PS 201
GF G I + F A+E A + + + + L+ N PS
Sbjct: 128 IHAFGF-----IMAGGVIRSVPAEPDEEFF---PALERAVRHSIPKPI----ALIVNYPS 175
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQ 259
NP + +V + +I ++SD YS F S++++ KD E T
Sbjct: 176 NPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFT- 234
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--QYLLSALLS 317
S+SK + G+R+G N+ ++ AA T++ S+ + T Q +A L+
Sbjct: 235 ---------SMSKTFSMAGWRMGFAVGNERLI-AALTRVKSYLDYGAFTPIQVAATAALN 284
Query: 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM----RHLLRSNTF 373
Q+ I+E ++ K+R LV +AG A +F W + RHL
Sbjct: 285 GP---QDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRHL------ 335
Query: 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM----QRL----- 424
+E K +V + ++PG V F + +++++ QR+
Sbjct: 336 -GSLEFSKLLVEKADVAVAPG------------VGFGEHGDGYVRIALVENEQRIRQAAR 382
Query: 425 --KAFVDSITTTLHN 437
K F+ S TLHN
Sbjct: 383 NIKRFLSSADETLHN 397
|
Length = 405 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 69/293 (23%), Positives = 111/293 (37%), Gaps = 43/293 (14%)
Query: 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFL 139
+ F+ G P K+A +F G + +T +L G E L CL PG+ L
Sbjct: 67 SPFR---GYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVE-LPQCLMNPGDTIL 122
Query: 140 LPTPYYPGFDRDLKWR----TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195
+P P YP + + + + N F T I E ++A+ K K +
Sbjct: 123 VPDPGYPDY-----LSGVALARAQFETMPLIAENNFLPDYTKIPE--EVAE----KAKLM 171
Query: 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDR 253
+ P+NP G ++ V + NI ++ D Y F VS ++ KD
Sbjct: 172 YLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDV 231
Query: 254 NCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT-----KMSSFGLVSSQT 308
E +Y+LSK + G+RV N+ ++ A +S FG +
Sbjct: 232 GIE----------LYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQ--- 278
Query: 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 361
+ ALLSD Q+ ++E R + R +S + G F W
Sbjct: 279 DAAIEALLSD----QSCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAW 327
|
Length = 389 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 29/235 (12%)
Query: 134 PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193
PG+ L+P+P YP R G +I PI N + I ++I E ++AQ+
Sbjct: 120 PGDVVLVPSPAYPAHFRG-PLIAGAQIYPIILKPENDWLIDLSSIPE--EVAQQAK---- 172
Query: 194 GVLVTN-PSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--L 250
+L N PSNP T R +V + I L+ D Y+ F S++EI
Sbjct: 173 -ILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGA 231
Query: 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQT 308
KD E ++LSK + G+RVG + N ++ T ++ +G+ S+
Sbjct: 232 KDIGVE----------FHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQ 281
Query: 309 QYLLSAL-LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 362
+ +AL L D +Y+ + ++R + R L+ GL + G + + A ++ WV
Sbjct: 282 KAAETALQLPD-----SYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLWV 331
|
Length = 394 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 73/346 (21%), Positives = 136/346 (39%), Gaps = 37/346 (10%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLT-AGATSANETLMFCLAEPGEAFLLPTPYY 145
G+ F +A+ E+ + V + K VL G+ L A PG+ L+P P Y
Sbjct: 70 GIQEFHEAVTEYYNNTHN--VILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGY 127
Query: 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
++ ++ G + N F I E ++A K K +++ P NP+
Sbjct: 128 TAYETGIQM-AGATSYYMPLKKENDFLPDLELIPE--EIADK----AKMMILNFPGNPVP 180
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQVWNR 263
+ ++ + NI ++ D Y+ F +S + + K+ E
Sbjct: 181 AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVE------- 233
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKF 321
+ SLSK L G R+G + N+++V A S+ +G V Q A L +
Sbjct: 234 ---INSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYG-VFLPIQKAACAAL---RN 286
Query: 322 TQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTF-EAEMELW 380
+ +N+ ++R LV G G + K +F W ++ S +F A M+
Sbjct: 287 GAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRA 346
Query: 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426
+V +PG + G+ R+ E+ L+ +++ ++
Sbjct: 347 NVVV-------TPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384
|
Length = 399 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 24/246 (9%)
Query: 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250
+ K +++ NP+NP G R L +V+I E + + SDEIY V SI +
Sbjct: 281 RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLA 340
Query: 251 KDRNCENTQVWNRVHIVYS-LSKDLGLPGFRVGAIYSNDDMVVAA-----ATKMSSFGLV 304
D C + +S LSK + G+R+G + + + +A +++ L
Sbjct: 341 PDLFC----------VTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLC 390
Query: 305 SS-QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCW 361
S+ Q ++ L + ++Y+ + +Q R+LV A GIS +K A + +
Sbjct: 391 SNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQ--RELVYNALNAIPGISAVKPKAAFYIF 448
Query: 362 VDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 421
+ ++ + + +++D K+ I G+ + +P FRV + ED L+ +M
Sbjct: 449 PKID--VKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLED-LEDAM 505
Query: 422 QRLKAF 427
RL F
Sbjct: 506 DRLADF 511
|
Length = 517 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 6e-10
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 7/177 (3%)
Query: 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-PGEA 137
L + D GLP +K + EF+ G D I LT GA+ ++ + +
Sbjct: 100 LGAYSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQILNAVIRGEKDG 157
Query: 138 FLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197
L+P P YP + + G +VP + + + ++ A+ + + V+ +++
Sbjct: 158 VLVPVPQYPLYSATISLLGGT-LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVI 216
Query: 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS--PGFVSIMEILKD 252
NP NP G +S L ++ ++ + L+ DE+Y ++ P F+S ++L D
Sbjct: 217 INPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERP-FISAKKVLMD 272
|
Length = 407 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 69/333 (20%), Positives = 120/333 (36%), Gaps = 83/333 (24%)
Query: 73 QSIFRELA-------LFQDYH---GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS 122
+ + +L +Y G +AL ++E G ++ I LT G+ S
Sbjct: 51 RDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNIS--PQNIALTNGSQS 108
Query: 123 ANETL--MFCLAEPGEAF---LLP-TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITET 176
A L +F + L P P Y G+ + + F
Sbjct: 109 AFFYLFNLFAGRRADGSLKKILFPLAPEYIGY-------ADAGLEE------DLFVSYRP 155
Query: 177 AIEEAYQLAQKR--------HLKVKG----VLVTNPSNPLGTTMSRNELNLLVNIITEKN 224
IE L + + HL + + V+ P+NP G ++ EL L + + N
Sbjct: 156 NIEL---LPEGQFKYHVDFEHLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHN 212
Query: 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW--NRVHIVYSLSKDLGLPGFRVG 282
I L+ D Y G F PG + E T +W N + SLSK LGLPG R G
Sbjct: 213 IPLLIDNAY-GPPF--PGIIFS---------EATPLWNPNIIL-CMSLSK-LGLPGVRCG 258
Query: 283 AIYSNDD---MVVAAATKMS----SFGLVSSQTQYLLSALLSDKKFTQNYISEN--KKRL 333
+ ++++ + +S G + + ++ + +SE +
Sbjct: 259 IVIADEEIIEALSNMNGIISLAPGRLG------PAIAAEMIESGDLLR--LSETVIRPFY 310
Query: 334 KQRHRKLVSGLEKA--GISCL--KSNAGLFCWV 362
+Q+ + ++ L + CL K +F W+
Sbjct: 311 RQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWL 343
|
Length = 416 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 75/307 (24%), Positives = 129/307 (42%), Gaps = 47/307 (15%)
Query: 58 WLDRNPDAAGFKRDG-QSIFRELA---LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113
L+ N + G +++ E + D K+AL ++ D +
Sbjct: 23 KLNSNENPFGPPPKAKEALRAEADKLHRYPDPDP-AELKQALADY--------YGVDPEQ 73
Query: 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS--LNGF 171
I+L G+ E L+ EPG+A L+P P Y ++ K G E+V +
Sbjct: 74 ILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIH-GAEVVKVPLDEDGQLDL 132
Query: 172 QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDE 231
+ AI++ K K V + +P+NP G +SR+++ ++ E + ++ DE
Sbjct: 133 EDILVAIDD----------KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVV-DE 181
Query: 232 IYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV 291
Y FS G S + +L + N + ++ +LSK GL G R+G +N + +
Sbjct: 182 AY--GEFS--GEPSTLPLLAEYP-------NLI-VLRTLSKAFGLAGLRIGYAIANAE-I 228
Query: 292 VAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-AGI 349
+ A K+ F +S Q A L D F + + E +R R L GL+K G+
Sbjct: 229 IDALNKVRAPFN-LSRLAQAAAIAALRDDDFIEKTVEEIN---AERER-LYDGLKKLPGL 283
Query: 350 SCLKSNA 356
S+A
Sbjct: 284 EVYPSDA 290
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 76/371 (20%), Positives = 133/371 (35%), Gaps = 79/371 (21%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS--ANETLMFCLAEPGEAFLLPTPY 144
G P ++A+ E R D +I ++ GA + L P + P
Sbjct: 76 GYPFLREAIAENDYRGR-----IDPEEIFISDGAKCDVFR---LQSLFGPDNTVAVQDPV 127
Query: 145 YP-------------GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191
YP D D ++ +I + CT+ N F +L ++ H+
Sbjct: 128 YPAYLDSNVMAGRAGVLDDDGRYS---KITYLPCTAENNFIP---------ELPEEPHID 175
Query: 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF-VSIMEIL 250
+ + + +P+NP GT +++ +L LV+ E ++ D YS + S P SI EI
Sbjct: 176 I--IYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFI-SDPSLPHSIFEIP 232
Query: 251 KDRNC--ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---------S 299
R C E S SK G G R+G ++ A + +
Sbjct: 233 GARFCAIE----------FRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCT 282
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQN-----YISENKKRLKQRHRKLVSGLEKAGISCLKS 354
F S Q A + + Y EN + L++ LE AG
Sbjct: 283 KFNGASYPVQRAAEAGYAGEGLQPILEAISYYMENARILRK-------ALEAAGFKVYGG 335
Query: 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 414
+ WV + S + + ++Y+ + +PGS + G+ R E
Sbjct: 336 EHAPYLWVKTPEGISS------WDFFDFLLYEYHVVGTPGSGFGPSGEGFVRFSAFGKRE 389
Query: 415 DTLKLSMQRLK 425
+ ++ + +R+K
Sbjct: 390 NIIE-ACERIK 399
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 66/312 (21%), Positives = 107/312 (34%), Gaps = 66/312 (21%)
Query: 55 LESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114
L +W R PD D R A Y+GLPA + +
Sbjct: 38 LSAWA-RYPDPEY---DE---LRAAA--AAYYGLPA---------------------ASV 67
Query: 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQIT 174
+ GA A L LA PG L+ P Y + R + G E+V +
Sbjct: 68 LPVNGAQEAIYLLPRLLA-PGRV-LVLAPTYSEYARAWR-AAGHEVVELPD-----LDRL 119
Query: 175 ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234
A+EEA ++V NP+NP G + L L + + L+ DE +
Sbjct: 120 PAALEEA-----------DLLVVCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFI 168
Query: 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA 294
P S+ R + ++ SL+K GL G R+G + ++ ++
Sbjct: 169 DFT---PDA-SLAP-QAARF-------PGLVVLRSLTKFFGLAGLRLGFVVAHPALIARL 216
Query: 295 ATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354
+ + V+ A L+D + + + RL +L + L + G +
Sbjct: 217 REALGPWT-VNGPALAAGRAALADT----AWQAATRARLAAERARLAALLARLGGLRVVG 271
Query: 355 NAGLFCWVDMRH 366
LF V
Sbjct: 272 GTALFLLVRTPD 283
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 8e-09
Identities = 72/304 (23%), Positives = 128/304 (42%), Gaps = 55/304 (18%)
Query: 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGF 171
+++V T G+ L+ + PG+ ++P P YP + Q L G
Sbjct: 96 TEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYP--------------IHSQAFILAGG 141
Query: 172 QITETAIE--EAYQLAQKRHL------------KVKGVLVTNPSNPLGTTMSRNELNLLV 217
+ + +E E ++L + + K K V+V P NP T+ ++ LV
Sbjct: 142 NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLV 201
Query: 218 NIITEKNIHLISDEIYSGTVFSSPGFV--SIMEI--LKDRNCENTQVWNRVHIVYSLSKD 273
+ ++ ++ISD Y+ F G+ SI+E+ KD E+ Y+LSK
Sbjct: 202 ALAKKERFYIISDIAYADITFD--GYKTPSILEVEGAKDVAVES----------YTLSKS 249
Query: 274 LGLPGFRVGAIYSNDDMVVAAATKMSS---FGLVSSQTQYLLSALLSDKKFTQNYISENK 330
+ G+RVG + N + V A K+ S +G+ + AL D Q+ + E +
Sbjct: 250 YNMAGWRVGFVVGNKKL-VGALKKIKSWLDYGMFTPIQVAATIALDGD----QSCVEEIR 304
Query: 331 KRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLN 390
+ ++R L+ AG K A +F W + R +E K+++ + K+
Sbjct: 305 ETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARH---LGSLEFSKQLLTEAKVA 361
Query: 391 ISPG 394
+SPG
Sbjct: 362 VSPG 365
|
Length = 403 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 51/355 (14%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYY 145
G+ A ++AL E + G +D S++ + A A+ + L PG+ + +
Sbjct: 67 GIAALREALAEKTERLYG--ARYDPASEVTVIASASEGLYAAISALVHPGDEVIY---FE 121
Query: 146 PGFDR--DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
P FD + G V I+ S F++ + A + + ++V P NP
Sbjct: 122 PSFDSYAPIVRLQGATPVAIK-LSPEDFRVNWDEVAAAITP------RTRMIIVNTPHNP 174
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
T S +L L + +I ++SDE+Y VF S+ + ++ R
Sbjct: 175 SATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSM--------ARHRELAER 226
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT------KMSSFGLVSSQT--QYLLSAL 315
IV S K + G+RVG +A A K+ F + S+ T Q+ +
Sbjct: 227 SVIVSSFGKSYHVTGWRVG-------YCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEA 279
Query: 316 LSDKKFTQNYISENKKRLKQRHRK-LVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFE 374
L++ +Y+ QR R L L + L S F RH S+ E
Sbjct: 280 LAEP---ASYLGLGA--FYQRKRDLLARELAGSRFELLPSEGSFFMLARFRHF--SD--E 330
Query: 375 AEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLKAF 427
++ + +++ D ++ P S+ + T+ G R+ F+ + TL +RL +
Sbjct: 331 SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCSL 384
|
Length = 384 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 78/357 (21%), Positives = 140/357 (39%), Gaps = 60/357 (16%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+ A ++A+ + + G + D+ +I +TAGAT A + L PG+ ++ P Y
Sbjct: 68 GVAALREAIAAKTARLYGRQYDADS-EITVTAGATEALFAAILALVRPGDEVIVFDPSYD 126
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ ++ G V + F++ A ++ + L +++ P NP GT
Sbjct: 127 SYAPAIELAGGR-AVRVALQ-PPDFRVDWQRFAAA--ISPRTRL----IILNTPHNPSGT 178
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
S ++ L +I +I+++SDE+Y VF G S+ + ++ R +
Sbjct: 179 VWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASV--------LRHPELRERAFV 230
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQN-- 324
V S K + G++VG Y VA A + F V QY FT N
Sbjct: 231 VSSFGKTYHVTGWKVG--Y-----CVAPAALSAEFRKVH---QYNT--------FTVNTP 272
Query: 325 -------YISENKKRLKQ-----RHRK--LVSGLEKAGISCLKSNAGLFCWVDMRHLLRS 370
Y+ + + + ++ + L + L F VD + S
Sbjct: 273 AQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYSAI--S 330
Query: 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEP---GWFRVCFANMSEDTLKLSMQRL 424
+ + E W + + + P S +P R+CFA E+TL + +RL
Sbjct: 331 DLDDVEFCQW--LTREHGVAAIP-LSVFYADPFPHRLVRLCFAK-QEETLDAAAERL 383
|
Length = 386 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLN 169
D ++ T G++ A ++ L PG+ ++ P Y L TG E+ P ++
Sbjct: 68 DAHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSLS-HLAVATGCEVRPWPLLAVR 126
Query: 170 GFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLIS 229
GF+ A+ L R + V+V P NP G +++ EL+ L+ L+
Sbjct: 127 GFRPDLDALRA---LLTPR---TRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLW 180
Query: 230 DEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG 282
D ++ V +P + + +++RV +LSK GLPG RVG
Sbjct: 181 DNAFADLVHDAPPLP-----------DPSALYDRVISFGTLSKAFGLPGLRVG 222
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 47/263 (17%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA---EPGEAFLL 140
DY L +K + F ++ D ++L GAT L+F + +P + L+
Sbjct: 55 DYLEL---RKRIASF------EQL--DLENVILGNGATE----LIFNIVKVTKPKKV-LI 98
Query: 141 PTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITET---AIEEAYQLAQKRHLKVKGVLV 197
P + ++R LK EI + T F E I+E L V +
Sbjct: 99 LAPTFAEYERALK-AFDAEIEYAELTEETNFAANEIVLEEIKEEIDL----------VFL 147
Query: 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 257
NP+NP G +S+ E+ +++ ++NI+LI DE + + + I + +N
Sbjct: 148 CNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKN--- 204
Query: 258 TQVWNRVHIVYSLSKDLGLPGFRVG-AIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALL 316
+ I+ + +K +PG R+G + SN ++ + +++ LL
Sbjct: 205 ------LIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWS-INTFADLAGQTLL 257
Query: 317 SDKKF---TQNYISENKKRLKQR 336
DK++ T +I E K L
Sbjct: 258 DDKEYIKKTIQWIKEEKDFLYNG 280
|
Length = 354 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 29/189 (15%)
Query: 110 DTSKIVLTAGATSANETLMFCLA---EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166
S I+ G T +F + +P A ++ TP + + R L+ G EI
Sbjct: 71 PASWILAGNGETE----SIFAVVSGLKPRRAMIV-TPGFAEYRRALQQ-VGCEIRRYSLR 124
Query: 167 SLNGFQITETAIEE-AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNI 225
+G+Q+T+ +E L + + P+NP G R L + NI
Sbjct: 125 EADGWQLTDAILEALTPDL--------DCLFLCTPNNPTGLLPERQLLQAIAERCKSLNI 176
Query: 226 HLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIY 285
LI DE + + GF+ + +N +W ++ SL+K +PG R+G +
Sbjct: 177 ALILDEAFIDFIPDETGFIPQLA-------DNPHLW----VLRSLTKFYAIPGLRLGYLV 225
Query: 286 SNDDMVVAA 294
++DD VA
Sbjct: 226 NSDDAAVAR 234
|
Length = 356 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-08
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251
+ G+L+ NP NP G + L +V+I E ++ +I DEIY+ V++ V + E++
Sbjct: 172 IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG 231
Query: 252 DRNCENTQVWNRVHIV-----YSLSKDLGLPGFRVGAI--YSND-DMVVAA------ATK 297
D V +SK+L PG R G I Y+ D D V K
Sbjct: 232 D--------------VPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAK 277
Query: 298 MSSFGLVSSQT--QYLLSALLSDKKFTQNYISENKKRLKQR 336
M V S T Q + ++S ++ +NY+ E KR ++R
Sbjct: 278 MIE---VCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKR 314
|
Length = 433 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 74/296 (25%), Positives = 118/296 (39%), Gaps = 48/296 (16%)
Query: 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVL-TAGATSANETLMFCL-AEPGEAFLLPTP 143
G P ++A+V +++ RG VT VL G+ L L PG+ ++P
Sbjct: 62 AGTPELREAIVGWLARRRG--VTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPEL 119
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
YP ++ G + T + + +L +R + + +PSNP
Sbjct: 120 AYPTYE------VGARLA--GATVV--------RADSLTELGPQR---PALIWLNSPSNP 160
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G + + L +V E+ + SDE Y + + VSI L R C
Sbjct: 161 TGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEP-VSI---LDPRVCGGDH--TG 214
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVA---AATKMSSFGL-VSSQTQYLLSALLSDK 319
+ V+SLSK L G+R G + + D +VA K + G+ V + Q + A L D
Sbjct: 215 LLAVHSLSKQSNLAGYRAGFV-AGDPALVAELLEVRKHA--GMMVPAPVQAAMVAALGD- 270
Query: 320 KFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--------CWVDMRHL 367
++ E ++R +R L LE AG S AGL+ CW + L
Sbjct: 271 ---DAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLWATRGEDCWDTVAWL 323
|
Length = 364 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 9e-07
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 110 DTSKIVLTAGATSANETLM-FCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSL 168
D + I LT GA+ A +M + + L P P YP + + G +VP
Sbjct: 190 DPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 248
Query: 169 NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLI 228
G+ + + +++ + A+ + + V+ ++V NP NP G ++ +V ++ + L+
Sbjct: 249 TGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLL 308
Query: 229 SDEIYSGTVF 238
+DE+Y V+
Sbjct: 309 ADEVYQENVY 318
|
Length = 534 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETL-------MFCLAEPGEAFL 139
G + ++A F R K+ ++++ T G E L +F P A+
Sbjct: 61 GEESLREAQRGFFK--RRFKIELKENELIPTFGT---REVLFNFPQFVLFDKQNPTIAY- 114
Query: 140 LPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQ--ITETAIEEAYQLAQKRHLKVKGVLV 197
P P+Y ++ + +++ + T N F + E ++E L V++
Sbjct: 115 -PNPFYQIYEGAAIA-SRAKVLLMPLTKENDFTPSLNEKELQEV-------DL----VIL 161
Query: 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 257
+P+NP G T+S EL V + + + LI+DE YS ++P S++E +
Sbjct: 162 NSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPP-PSLLE-------AS 213
Query: 258 TQVWNR----VHIVYSLSKDLGLPGFRVGAI 284
V N V ++ S+SK PG R G I
Sbjct: 214 ILVGNESFKNVLVINSISKRSSAPGLRSGFI 244
|
Length = 374 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP---YYPGFDRDLKWRTGVEIVPIQCT 166
++ L G A + L + +PG+ L+P P YY R + G E+ +
Sbjct: 81 SPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSAR---YHHG-EVREYPVS 136
Query: 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIH 226
+ F+ T + +AY + V +T+P NP G+ + +E+ L E+ +
Sbjct: 137 KADDFEQTADTVLDAYD-------GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETL- 188
Query: 227 LISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG 282
++ DE Y G P V+++E D V ++ + SK GL G R+G
Sbjct: 189 VVVDEAY-GEFAERPSAVALVEERDD-----------VAVLRTFSKAYGLAGLRLG 232
|
Length = 357 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 78/352 (22%), Positives = 142/352 (40%), Gaps = 40/352 (11%)
Query: 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY 144
+HG F++A ++ + G V +T + L G+ L + PG+ LL P
Sbjct: 67 FHGTLDFREAAAQWYEQRFGLAVDPETEVLPLI-GSQEGTAHLPLAVLNPGDFALLLDPG 125
Query: 145 YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL 204
YP + + G +I P+ + N F I LAQ R + VL + P NP
Sbjct: 126 YPSHAGGV-YLAGGQIYPMPLRAENDFLPVFADIPTEV-LAQARLM----VL-SYPHNPT 178
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV-SIMEILKDRNCENTQVWNR 263
+ V + ++ L+ D Y VF SI++ +++
Sbjct: 179 TAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVS------- 231
Query: 264 VHI-VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYL------LSALL 316
I ++LSK + GFR+G N + + A ++ + V QY ++AL
Sbjct: 232 --IEFFTLSKSYNMGGFRIGFAIGNAQL-IQALRQVKA---VVDFNQYRGILNGAIAALT 285
Query: 317 SDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAE 376
Q + + + +QR ++ L + G A ++ W + + N+
Sbjct: 286 GP----QATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQGNS---- 337
Query: 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE-DTLKLSMQRLKAF 427
+E ++V + SPGS + G+ R FA + + D L+ +++R+ AF
Sbjct: 338 VEFCTQLVAQTGVAASPGSGFGKSGEGYVR--FALVHDPDILEEAVERIAAF 387
|
Length = 388 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 37/214 (17%)
Query: 127 LMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186
+M G+ + P P + + K VEI ++E Y
Sbjct: 92 IMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEI--------------PVKLKEDYTYDV 137
Query: 187 KRHLKV------KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
+KV K V + NP+NP G+ + R ++ + II + ++ DE Y F
Sbjct: 138 GSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDI---IKIIEKSRGIVVVDEAY----FEF 190
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
G + I + N + ++ +LSK GL G RVG +N++++ S
Sbjct: 191 YGNTIVDVINEFEN---------LIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP 241
Query: 301 FGLVSSQTQYLLSALLSDK-KFTQNYISENKKRL 333
+ + S L L + K NYI ++RL
Sbjct: 242 YNINSLSQVIALKVLRTGVLKERVNYILNERERL 275
|
Length = 351 |
| >gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 19/257 (7%)
Query: 111 TSKIVLTAGATSANETLMFCLAEPGEAFLLP---TPYYPGFDRDLKWRTGVEIVPIQCTS 167
++ V + + L+ C + G P Y + LK I S
Sbjct: 754 CTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLK----ANFRRIPTKS 809
Query: 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHL 227
+GF++T + + +K + + G + NP G S +E+ ++++ + +
Sbjct: 810 SDGFKLTAKTLASTLETVKKPWVYISGPTI----NPTGLLYSNSEIEEILSVCAKYGARV 865
Query: 228 ISDEIYSGTVFSSPGFVS--IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIY 285
I D +SG + + G+ + IL N V ++ LS +L G G +
Sbjct: 866 IIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSF--AVALLGGLSTELLSGGHEFGFLA 923
Query: 286 SNDDMVVAAATKMSSFGLVSSQTQYL---LSALLSDKKFT-QNYISENKKRLKQRHRKLV 341
ND +++ A S +Y L L + K + ++E KK LK R +L
Sbjct: 924 LNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLK 983
Query: 342 SGLEKAGISCLKSNAGL 358
LE G L+ G+
Sbjct: 984 ETLEACGWDVLEPQGGI 1000
|
Length = 1082 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 252
K V + NP+NP GT ++ +L + I+E N ++ DE Y V ++ F + +L+
Sbjct: 153 KIVWICNPNNPTGTYVNDRKLTQFIEGISE-NTLIVIDEAYYEYV-TAKDFPETLPLLEK 210
Query: 253 RNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLL 312
+ ++ + SK GL FRVG +++++ F VSS Q
Sbjct: 211 H--------KNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPFN-VSSLAQKAA 261
Query: 313 SALLSDKKFTQNYISENKKRLKQ 335
+ D +F + + N + L+Q
Sbjct: 262 TIAFGDDEFIEEIVRVNTEGLRQ 284
|
Length = 366 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250
+ V+ P+NP G ++ EL L + + I LI D Y F I I
Sbjct: 179 STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY------GVPFPGI--IF 230
Query: 251 KDRNCENTQVWN-RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM 298
D T +WN + + SLSK LGLPG R G I +N+ V+ A T M
Sbjct: 231 SDA----TPLWNENIILCMSLSK-LGLPGSRCGIIIANEK-VIQAITNM 273
|
Length = 417 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 33/173 (19%)
Query: 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQI 173
IV+TAG T A + LA ++P Y ++R + I+ N +
Sbjct: 57 IVITAGITEALYLIGI-LALRDRKVIIPRHTYGEYER-VARFFAARIIKGP----NDPEK 110
Query: 174 TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233
E +E + V NP+NP G + EL L++ + ++N LI DE
Sbjct: 111 LEELVE-----------RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDE-- 157
Query: 234 SGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS 286
F+ ++ + EN + + +K GLPG RVG +
Sbjct: 158 --------AFIDFVKKPESPEGENII------KLRTFTKSYGLPGIRVGYVKG 196
|
Length = 311 |
| >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 27/250 (10%)
Query: 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITE 175
LT+GA A E L+ PG++ + P + L++ G P+ + G Q
Sbjct: 146 LTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRY-AGFSASPVSVDA-EGMQPE- 202
Query: 176 TAIEEAYQLAQKRHLKVKGVLVT-NPSNPLGTTMSRNELNLLVNIITE-KNIHLISDEIY 233
+E A LAQ + V++T NP G ++S L N++ + +I D+ +
Sbjct: 203 -KLERA--LAQG----ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHF 255
Query: 234 SGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA 293
+ + SS + S++ + TQ W ++ S+SK LG P R+ + S+
Sbjct: 256 A--LLSSSPYHSVIP-------QTTQRWA---LIRSVSKALG-PDLRLAFVASDSATSAR 302
Query: 294 AATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352
+++S VS Q L+ A L+D ++ Q +++ + QR +KL L++ GI+
Sbjct: 303 LRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGIAIP 361
Query: 353 KSNAGLFCWV 362
GL W+
Sbjct: 362 SPGDGLNLWL 371
|
Length = 431 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 68/307 (22%), Positives = 118/307 (38%), Gaps = 58/307 (18%)
Query: 109 FDTSKIVLTAGATSANETLMFCLAEPGEAFLLP----TPYYPGFDRDLKWRT----GVEI 160
+I+L G S + + C A L P YP F + T VE
Sbjct: 86 VPADRIILGNG--SEDLIAVIC-----RAVLRPGDRVVTLYPSFPLHEDYPTMMGARVER 138
Query: 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNII 220
V + T + L + ++ +NPSNP+G+ ++ ++L +++
Sbjct: 139 VTV----------TPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDAT 188
Query: 221 TEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY-SLSKDLGLPGF 279
+ + ++ DE Y+ + + S + +LK R W IV + SK GL G
Sbjct: 189 PPETL-IVVDEAYAEYA-AGDDYPSALTLLKARG----LPW----IVLRTFSKAYGLAGL 238
Query: 280 RVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENK---KRLKQR 336
RVG +D +V ++ + V+ Q A L D++ ++ +RLK+
Sbjct: 239 RVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKE 298
Query: 337 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMEL--------WKKIVYDVK 388
L + G S A F + D R R + AE L WK+ ++
Sbjct: 299 -------LAEMGYRIAPSRAN-FLFFDAR---RPASAVAEALLRQGVIVKPWKQPGFETF 347
Query: 389 LNISPGS 395
+ +S GS
Sbjct: 348 IRVSIGS 354
|
Length = 371 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 27/225 (12%)
Query: 65 AAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSAN 124
+AG +R G + E Y G ++ L ++ G V ++++T G A
Sbjct: 63 SAGVERGGVQAYTE------YRGDADIRELLAARLAAFTGAPVD-AADELIITPGTQGAL 115
Query: 125 ETLMFCLAEPGEAFLLPTPYYPGFD-RDLKWRTGVEIVPIQCTSLN---GFQITETAIEE 180
+ G+ + P Y F R L E+VP+Q L+ + +EE
Sbjct: 116 FLAVAATVARGDKVAIVQPDY--FANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEE 173
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
A++ V+ L +NP+NP G S E+ + + +I D++YS ++
Sbjct: 174 AFKAG------VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDG 227
Query: 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIY 285
+ + + D N + I+ SK L G+R+G +
Sbjct: 228 TSYTHLRALPIDPE-------NVITIM-GPSKTESLSGYRLGVAF 264
|
Length = 405 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 46/229 (20%)
Query: 86 HGLPAF-KKALVEFMS------------EIRGNKVTFDTSKIVLTAGATSANETL----- 127
H PAF +AL E + E+R + + L G L
Sbjct: 40 HPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGT 99
Query: 128 ---MF----CLAEPGEA--FLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAI 178
+F + PG+A ++P P+Y ++ G E + CT+ NGF A+
Sbjct: 100 REALFAFAQAVINPGQAPLVVMPNPFYQIYE-GAALLAGAEPYFLNCTAENGFLPDFDAV 158
Query: 179 -EEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237
E ++ + + + V +P NP G +S + L L+ + + + SDE YS
Sbjct: 159 PESVWR-------RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELY 211
Query: 238 FSS----PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG 282
F G + L + V+ +SLSK LPG R G
Sbjct: 212 FDEGNPPAGLLQAAAQLGRDDFRRCLVF------HSLSKRSNLPGLRSG 254
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 8e-04
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250
+ K +++ NP+NP G S+ L +V I + N+ + +DEIY ++ +SI +
Sbjct: 168 RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLA 227
Query: 251 KDRNCENTQVWNRVHIVYS-LSKDLGLPGFRVG 282
D C + ++ LSK + GFRVG
Sbjct: 228 PDLLC----------VTFNGLSKAYRVAGFRVG 250
|
Length = 404 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC-TSL 168
S ++T T + + G+ LLP + + R G EIV
Sbjct: 68 KMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDED 127
Query: 169 NGFQITETAIEEAYQLAQKRHLKVKGVLVTN-PSNPLGTTMSRNELNLLVNIITE----- 222
GF A++EA Q A K K +++ N P+NP G T + E +V I E
Sbjct: 128 GGFDTD--ALKEALQAAYN---KGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAG 182
Query: 223 KNIHLISDEIYSGTVF 238
+ + D+ Y G +
Sbjct: 183 TKVVAVVDDAYFGLFY 198
|
Length = 388 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 111 TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP--GFDRDLKWRTGVEIVPIQCTSL 168
+ I++ GA + LM C+ +PG+ + P + FD + G E++ +
Sbjct: 103 SENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAV---NGAEVIKV--PRT 157
Query: 169 NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLI 228
F + I EA + H K K + +T+P+NP G+ +S ++L I E I ++
Sbjct: 158 PDFSLDVPRIVEAV----ETH-KPKLLFLTSPNNPDGSIISDDDLLK----ILELPILVV 208
Query: 229 SDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG 282
DE Y FS+ S M+ +K + N + ++ + SK GL G RVG
Sbjct: 209 LDEAY--IEFSTQE--SRMKWVKKYD-------NLI-VLRTFSKRAGLAGLRVG 250
|
Length = 380 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 23/168 (13%)
Query: 191 KVKGVLVTNPSNPLGTTMSRNEL-NLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI 249
+ + V + NP+NP GT + E+ L + ++ ++ DE Y+ V + +E+
Sbjct: 154 RTRLVFIANPNNPTGTYLPAEEVERFLAGV--PPDVLVVLDEAYAEYV-RRKDYEDGLEL 210
Query: 250 LKDRNCENTQVWNRVHIVYS--LSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-FGLVSS 306
+ N V + SK GL G RVG + + ++ A ++ F V+S
Sbjct: 211 VAKF--PNV--------VVTRTFSKAYGLAGLRVGYGIAPPE-IIDALNRVRQPFN-VNS 258
Query: 307 QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354
A L D F + + N + + L L + G+ + S
Sbjct: 259 LALAAAVAALDDDAFVEKSRALNAEGMAW----LTEFLAELGLEYIPS 302
|
Length = 367 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 112 SKIVLTAGATSANETLM--FCLAEPGE-AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSL 168
+++++ GA E L+ FC EPG+ A L P Y G GVEI + +L
Sbjct: 75 EQVLVSRGADEGIELLIRAFC--EPGKDAILYCPPTY-GMYSVSAETIGVEIRTVP--TL 129
Query: 169 NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLI 228
+ +Q+ AI + L VK V V +P+NP G ++ +L L+ + K I ++
Sbjct: 130 DNWQLDLPAIAD--NLD-----GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAI-VV 181
Query: 229 SDEIY 233
+DE Y
Sbjct: 182 ADEAY 186
|
Length = 351 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.97 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.97 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.96 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.95 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.95 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.95 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.95 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.95 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.95 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.94 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.94 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.94 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.94 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.94 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.94 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.94 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.94 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.94 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.94 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.93 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.93 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.93 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.93 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.93 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.93 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.93 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.92 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.92 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.92 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.92 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.92 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.91 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.91 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.91 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.91 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.91 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.91 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.91 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.91 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.9 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.9 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.9 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.9 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.9 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.9 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.9 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.9 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.9 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.89 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.89 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.89 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.89 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.89 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.89 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.89 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.88 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.88 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.88 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.88 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.88 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.88 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.87 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.87 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.87 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.87 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.87 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.87 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.87 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.87 | |
| PLN02651 | 364 | cysteine desulfurase | 99.87 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.86 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.86 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.85 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.85 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.85 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.85 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.85 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.84 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.84 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.84 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.84 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.84 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.84 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.83 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.83 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.83 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.83 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.83 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.83 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.82 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.82 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.82 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.82 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.81 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.81 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.81 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.81 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.81 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.81 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.8 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.8 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.78 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.78 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.78 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.77 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.77 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.76 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.76 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.75 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.75 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.75 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.74 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.74 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.73 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.73 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.72 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.72 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.72 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.72 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.71 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.71 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.71 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.7 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.7 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.69 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.69 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.69 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.69 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.68 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.68 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.68 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.68 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.67 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.67 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.67 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.67 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.67 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.67 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.66 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.66 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.66 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.65 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.65 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.63 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.6 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.6 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.6 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.6 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.59 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.59 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.59 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.59 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.59 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.59 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.59 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.58 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.58 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.58 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.58 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.58 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.58 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.57 | |
| PLN02263 | 470 | serine decarboxylase | 99.57 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.57 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.57 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.57 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.56 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.56 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.55 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.55 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.55 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.55 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.55 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.54 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.54 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.54 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.54 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.53 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.53 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.53 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.53 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.53 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.53 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.52 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.5 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.5 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.49 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.49 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.49 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.47 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.46 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.46 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.44 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.43 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.41 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.38 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.38 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.34 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.33 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.32 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.31 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.3 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.3 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.3 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.29 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.26 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.24 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.19 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.18 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.14 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.13 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.09 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.09 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.93 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.8 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.77 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.77 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.77 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.75 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.73 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.72 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.61 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.57 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.56 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.47 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.43 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.35 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.28 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.03 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.82 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.71 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.64 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.85 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 96.58 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 96.05 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 92.06 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 88.56 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 86.36 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 84.86 |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-70 Score=559.10 Aligned_cols=467 Identities=84% Similarity=1.316 Sum_probs=398.5
Q ss_pred CCccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccc
Q 043923 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELA 80 (469)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (469)
|.++|.++++....++.+|+..|..+..++|++..+|.|+|+|+++||+++.+.+.++++...+.......+........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (468)
T PLN02450 1 MKLLSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELA 80 (468)
T ss_pred CcccchhhcccccCCCCchHHHHHHHhcCCCCcccCCCeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhh
Confidence 78999999999999999999999999999999999999999999999999999999999876432111000111123556
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEI 160 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~ 160 (469)
.|+++.|.++||++||+|++++++.++++++++|++|+|+++++..++.+++++||.|++++|+|+.|...+....|+++
T Consensus 81 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~ 160 (468)
T PLN02450 81 LFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEI 160 (468)
T ss_pred cCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEE
Confidence 79999999999999999999888866678999999999999999999999999999999999999999888874339999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+++|++.+++|.+|++.+++++++..+.+.++++|++||||||||.++|.+++++|+++|++|+++||+||+|+++.|++
T Consensus 161 v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~ 240 (468)
T PLN02450 161 VPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS 240 (468)
T ss_pred EEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCC
Confidence 99999766789999999999987655555689999999999999999999999999999999999999999999988876
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCch
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~ 320 (469)
..+.++.+......+.+.+..+++++++||||.||+||+|+||++++++.+.+.+.+...++.++.+.|.++..+|.+..
T Consensus 241 ~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~ 320 (468)
T PLN02450 241 PGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKK 320 (468)
T ss_pred CCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCch
Confidence 55556555432100001113578999999999999999999999998776666666665555578999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
+...++++.+++++++++.+.+.|+++|+++.++++|+|+|++++.......+..+.+++.++++++||.|.||+.|+..
T Consensus 321 ~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~ 400 (468)
T PLN02450 321 FTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCT 400 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCC
Confidence 75567889999999999999999999999999999999999999865544444555678899998899999999999876
Q ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccEEEEEeeccccc
Q 043923 401 EPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTLHNQSNHQSIKNSRRRSLTKWVFRLSFDDRVTG 467 (469)
Q Consensus 401 ~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (469)
.++|+||+++.++++++++++++|++++++....--|.+-||-.||++|.--.||+||++|.||-..
T Consensus 401 ~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (468)
T PLN02450 401 EPGWFRVCFANMSEETLDLAMKRLKSFVESDSGRRINKSSHQRLKNLRRKTVSKWVFRLSFHDREPE 467 (468)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHhccccccccchhcccccccchhhhccceEEeeccCCcC
Confidence 7899999999668999999999999999888865667789999999999999999999999999654
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=515.44 Aligned_cols=425 Identities=68% Similarity=1.161 Sum_probs=405.9
Q ss_pred CCccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccc
Q 043923 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELA 80 (469)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (469)
|.+||.++....++.++|||.+|++|..|+|++..+|.|+|+|+..||.++.+++..|+++.+++...+.++...+.++.
T Consensus 36 ~~~lS~~~~~~~~~e~S~yf~g~~~y~~npy~~~~Np~GiIQmGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~la 115 (471)
T KOG0256|consen 36 NNLLSSKAVDDKHGEDSSYFYGWKAYEKNPYDPIKNPLGIIQMGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDELA 115 (471)
T ss_pred hhhcccccccccccccchHHHHHHhcccCCCCCCCCchHHHHhhhhhhHHHHHHHHHHHHhChhhhhcccccccchhhHh
Confidence 46899999999999999999999999999999999999999999999999999999999999888887888888889999
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEI 160 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~ 160 (469)
.|+++.|.+.+|+++|+|+.+..+..+..+|+++++++|++.|...++.+|.+|||..++|.|.|+++...+++..|+++
T Consensus 116 ~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgvei 195 (471)
T KOG0256|consen 116 MFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEI 195 (471)
T ss_pred hcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCceE
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999998889999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
++|.+..+++|+++++++|.++++..+.+.++++|+++||+||.|.+++++++..+++++.++++++|+||+|+..+|+.
T Consensus 196 vpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~ 275 (471)
T KOG0256|consen 196 VPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDK 275 (471)
T ss_pred EEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCc
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCch
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~ 320 (469)
..+.|+.++..+.. ...+++.+++|+||.||+||+|+|.|...++.+.++..++..++.+|+..|..++.+|.|..
T Consensus 276 ~~F~Sv~ev~~~~~----~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~ 351 (471)
T KOG0256|consen 276 SEFRSVLEVRKDPH----LDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEE 351 (471)
T ss_pred cCceEHHHHhhccc----cCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHH
Confidence 99999999877431 14578999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
+.+.++.+.+++++.+.+++.+.|+++||++.+..+|+|+|+++.......+++.+.+++++++.+.++.+.||+.|...
T Consensus 352 f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~ 431 (471)
T KOG0256|consen 352 FTREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCH 431 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceec
Confidence 99999999999999999999999999999999999999999999999888899999999999999889999999999999
Q ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 401 EPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 401 ~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+||+|+||+...++.++.+++||++++.
T Consensus 432 EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 432 EPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 99999999998788888889999999998
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-69 Score=553.22 Aligned_cols=432 Identities=54% Similarity=0.993 Sum_probs=376.7
Q ss_pred CCccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccc
Q 043923 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELA 80 (469)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (469)
|++||+++++..+++++|||.+|++|..++|++..+|.|+|+|+.+||++..+.+.+++++.+...+...+++..+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (496)
T PLN02376 9 GAILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIA 88 (496)
T ss_pred hhhhhhhhcccccCCCCchHHHHHHHhCCCCCcccCCCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999998766555555666677788
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEI 160 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~ 160 (469)
.|+++.|.++||++||+|+++.++.++.+++++|++|+|+++|+..++.+|++|||.|++++|+|+.|...+....|+++
T Consensus 89 ~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~v 168 (496)
T PLN02376 89 NFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEI 168 (496)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEE
Confidence 89999999999999999999888766778999999999999999999999999999999999999999987774339999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+++|++.+++|.+|++.++.+++.....+.++++|+++|||||||.++|.+++++|+++|++|+++||+||+|+++.|++
T Consensus 169 v~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~ 248 (496)
T PLN02376 169 IPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG 248 (496)
T ss_pred EEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCC
Confidence 99999766788999999998876544334589999999999999999999999999999999999999999999988887
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCch
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~ 320 (469)
..+.++.++.++.+.. ....+++++++||||.||+||+|+||++++++.+.+.......++.++++.|.++.++|.+..
T Consensus 249 ~~~~si~~l~~~~~~~-~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~ 327 (496)
T PLN02376 249 GDFVSVAEVVNDVDIS-EVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQ 327 (496)
T ss_pred CCcccHHHhhcccccc-ccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChh
Confidence 7777877775421000 001246788999999999999999999998777777766676677789999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc-CChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS-NTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~-~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
++++++++.+++++++++.+.+.|++.|+++.++++|+|+|++++..... ..++.+.+++..+++++||.|.||+.|+.
T Consensus 328 ~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~ 407 (496)
T PLN02376 328 FVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRC 407 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCC
Confidence 87888999999999999999999999999999999999999999865432 33345568899999888999999999987
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 400 TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 400 ~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..++|+|||++..+++.+++++++|++++.+.++
T Consensus 408 ~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~~ 441 (496)
T PLN02376 408 TEPGWFRICFANMDDDTLHVALGRIQDFVSKNKN 441 (496)
T ss_pred CCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhhh
Confidence 7789999999976889999999999999986554
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-67 Score=531.16 Aligned_cols=437 Identities=60% Similarity=1.039 Sum_probs=379.9
Q ss_pred CCccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccc
Q 043923 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELA 80 (469)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (469)
|++||.|+++..++.++||+..|+.+..++|++..||.|+|+|+++||.+..+.+.+++++.++.......+.....++.
T Consensus 10 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (447)
T PLN02607 10 AVGLSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENA 89 (447)
T ss_pred hhhhhhhhhhcccCCCchHHHHHHHhcCCCCCcccCCCceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999998765443322322344566
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEI 160 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~ 160 (469)
.|.+..|.++||+++|+|++++++..+++++++|++|+|+++|+..++.++++|||.|+++.|+|+.|...+....|+++
T Consensus 90 ~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~v 169 (447)
T PLN02607 90 LFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKI 169 (447)
T ss_pred ccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEE
Confidence 79999999999999999999988766678999999999999999999999999999999999999999888774349999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
++++++.+++|.+|++++++++++..+.+.++++++++|||||||.++|.+++++|+++|++|+++||+||+|+++.|++
T Consensus 170 v~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~ 249 (447)
T PLN02607 170 VPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA 249 (447)
T ss_pred EEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence 99999877788999999999998777777799999999999999999999999999999999999999999999988887
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCch
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~ 320 (469)
.++.++.++..+.+. .+..+++++++||||.||++|+|+||+++.++.+...+.....+..+|++.|.++.++|.+..
T Consensus 250 ~~f~S~~s~~~~~~~--~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~ 327 (447)
T PLN02607 250 SEFVSVAEIVEARGY--KGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEE 327 (447)
T ss_pred CCcccHHHHHhhcCC--CCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCch
Confidence 667787776432100 012478999999999999999999999997766766666666665688999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
+.+++++..+++++++++.+.+.|++.|+++.++++|+|+|++++..........+.+++.++++++||.|.||+.|+..
T Consensus 328 ~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~ 407 (447)
T PLN02607 328 FTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCS 407 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCC
Confidence 87788999999999999999999999999999999999999999865432223445678888998889999999999887
Q ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcccccccc
Q 043923 401 EPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTLHNQS 439 (469)
Q Consensus 401 ~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~~~~~~~ 439 (469)
.++|+||+++.++++.++++++||.++++++++++..|.
T Consensus 408 ~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~~~~~~~ 446 (447)
T PLN02607 408 EPGWFRVCFANMSEDTLEVALKRIHRFMDRRKTASSQQQ 446 (447)
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 899999999976899999999999999998888766553
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-58 Score=460.06 Aligned_cols=357 Identities=26% Similarity=0.469 Sum_probs=311.0
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc-EE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK-IV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~-i~ 115 (469)
.++|+|++|++.++ |+.+.+++.+.... ... .|.+..|.++||++||+++.++++ +.+++++ |+
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~-----------~~~-~Y~~~~G~~~LReaia~~~~~~~~--~~~~~~~eii 93 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEE-----------GGT-HYTPSAGIPELREAIAEKYKRRYG--LDVDPEEEII 93 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhc-----------ccC-CCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 68999999999886 45566666553211 111 777899999999999999999987 5577776 99
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCC-CCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSL-NGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+|+++|+..++.++++|||.|++++|.|+.|...+... |.+++.++++.. .+|.+|++++++++++ ++|+
T Consensus 94 vt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~-gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------ktk~ 166 (393)
T COG0436 94 VTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKA 166 (393)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc-CCEEEEEeCCcCccCCcCCHHHHHhhcCc------cceE
Confidence 9999999999999999999999999999999999999988 999999998654 4899999999999986 8999
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++||||||.+++.+++++|+++|++||++||.||+|.++.|++..+.++.++.+ ..+++|++.||||+|
T Consensus 167 i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~--------~~~~~i~i~s~SK~~ 238 (393)
T COG0436 167 IILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAG--------ARDRTITINSFSKTY 238 (393)
T ss_pred EEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCC--------CcceEEEEecccccc
Confidence 999999999999999999999999999999999999999999999866678777744 347899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCce
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISC 351 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v 351 (469)
+|+|||+||++++++.+.+.+.+++.. .+++.+.|.++.++|+..+. ...++..++.+++||+.+.+.|.+. |+++
T Consensus 239 ~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~ 317 (393)
T COG0436 239 GMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGLSV 317 (393)
T ss_pred cccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Confidence 999999999999756666666544433 35788999999999998754 4567888899999999999999988 5998
Q ss_pred ec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 352 LK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 352 ~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.. |+|+||+|++++.. .++.+++.+|++++||.|.||+.|+.. +.+++|++++. +++.+++++++|+++++
T Consensus 318 ~~~p~Ga~Y~~~~i~~~------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~~~ 390 (393)
T COG0436 318 VKPPEGAFYLFPKIPEL------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLA 390 (393)
T ss_pred ccCCCeeEEEEeecCCC------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHHHH
Confidence 87 88999999999865 345689999999999999999999985 78999999996 77999999999999988
Q ss_pred hh
Q 043923 430 SI 431 (469)
Q Consensus 430 ~~ 431 (469)
.+
T Consensus 391 ~~ 392 (393)
T COG0436 391 EY 392 (393)
T ss_pred hc
Confidence 65
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-53 Score=424.27 Aligned_cols=354 Identities=19% Similarity=0.301 Sum_probs=286.7
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i 114 (469)
+.++|+|+.|+++++ ++.+.+++.+.... .....|++..|.++||+++|+++++.+| +.++++ +|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (388)
T PRK07366 29 GKELIDLSLGSSDLPAPAHALEAIAQSLHD-----------PSTHGYLLFHGTLDFREAAAQWYEQRFG--LAVDPETEV 95 (388)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------cccCCCCCCCCCHHHHHHHHHHHHHhhC--CcCCCcCeE
Confidence 456899999999986 56666666653110 1245799889999999999999988776 457888 69
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||.|++++|+|+.|...+... |++++.+|++.+++|.+|++++++.+.+ ++++
T Consensus 96 ~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 168 (388)
T PRK07366 96 LPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLA-GGQIYPMPLRAENDFLPVFADIPTEVLA------QARL 168 (388)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEECCCccCCCCCHHHHHHhhcc------cceE
Confidence 99999999999999999999999999999999999999887 9999999998777888999988877654 7899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC-ccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
++++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++.. ..++.++.+ ..+++++++||||+
T Consensus 169 i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~--------~~~~vi~~~SfSK~ 240 (388)
T PRK07366 169 MVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADP--------EKSVSIEFFTLSKS 240 (388)
T ss_pred EEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCC--------CcccEEEEeecccc
Confidence 999999999999999999999999999999999999999998776543 345555422 23578999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhccccc--C-cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSSFGL--V-SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS 350 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~~~~--~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~ 350 (469)
||+||+|+||++++++ +.+.+.+...... . +.+.+.++.++..+ .+++++.++.++++++.+.+.|+++|+.
T Consensus 241 ~g~~GlRiG~~v~~~~-li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~l~~~~~~~~~~r~~l~~~L~~~~~~ 315 (388)
T PRK07366 241 YNMGGFRIGFAIGNAQ-LIQALRQVKAVVDFNQYRGILNGAIAALTGP----QATVQQTVQIFRQRRDAFINALHQIGWP 315 (388)
T ss_pred cCCcchhheehcCCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 9999999999999554 4454544443322 2 23344444444332 4568899999999999999999999988
Q ss_pred eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 351 CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
+..|.+|+|+|++++..... ++.+++.++++++||.|.||+.|+...++|+||+++. +++++++++++|++++
T Consensus 316 ~~~p~~g~f~~~~~~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 316 VPLPEATMYVWAKLPEPWQG----NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAFL 388 (388)
T ss_pred ccCCCeeEEEEEECCcccCC----CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHhC
Confidence 87889999999999853211 1346777888888999999999976557899999985 8999999999998763
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-52 Score=418.80 Aligned_cols=350 Identities=19% Similarity=0.335 Sum_probs=291.9
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i 114 (469)
..++|||+.|+++++ ++.+.+++.+.... .....|+ ..|.++||++||++++++++ +.+++ ++|
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~~y~-~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 96 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQ-----------KESYGYT-LSGIQEFHEAVTEYYNNTHN--VILNADKEV 96 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhc-----------cccCCCC-CCCcHHHHHHHHHHHHHHhC--CCCCCCCeE
Confidence 457899999998874 46666666653110 1123455 47999999999999998877 45678 899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||.|++++|+|+.|...+... |++++++|++++++|.+|++++++++.+ ++++
T Consensus 97 ~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 169 (399)
T PRK07681 97 LLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMA-GATSYYMPLKKENDFLPDLELIPEEIAD------KAKM 169 (399)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhc-CCEEEEEecCCCCCCcCCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999999999887 9999999998777899999999888754 7899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|+++|||||||.++|.+++++|+++|++||++||+||+|.++.|++....++.++.. ..+++|+++||||+|
T Consensus 170 v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~ 241 (399)
T PRK07681 170 MILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG--------AKEVGVEINSLSKSY 241 (399)
T ss_pred EEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC--------CcccEEEEeeccccc
Confidence 999999999999999999999999999999999999999998777655455555422 346899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|+||+|+||++++++ +.+.+..... .++++.+.|.++..+|++. .+++++.++.++++++.+.+.|+++|+++.
T Consensus 242 ~~~GlRiG~~i~~~~-l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 317 (399)
T PRK07681 242 SLAGSRIGYMIGNEE-IVRALTQFKSNTDYGVFLPIQKAACAALRNG---AAFCEKNRGIYQERRDTLVDGFRTFGWNVD 317 (399)
T ss_pred CCccceeEEEecCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 999999999999654 4444444432 3457889999999999875 346788888999999999999999999888
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
.+.+|+|+|++++... +..+++.++++++||.|.||..|+...++++||+++. +++++++++++|++
T Consensus 318 ~p~~g~f~~~~l~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 318 KPAGSMFVWAEIPKGW------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred CCCeeeEEEEECCCCC------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 8889999999997532 2346788888778999999999986567899999984 88999999999988
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-52 Score=418.52 Aligned_cols=366 Identities=22% Similarity=0.346 Sum_probs=295.5
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i 114 (469)
..++|+|+.|+++++ ++.+.+.+.+.... .....|++..|.++||+++|+++++++| +.++++ +|
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQD-----------PRTHRYSASKGIPGLRRAQAAYYARRFG--VKLNPDTQV 95 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHcC-----------cccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 346899999988764 34444444432110 2346799999999999999999988766 346787 89
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||+|++++|+|+.|...+... |++++.+|++.+++|..+ +++.++.. .+++++
T Consensus 96 ~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~~---l~~~~~~~---~~~~~~ 168 (405)
T PRK09148 96 VATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMA-GGVIRSVPAEPDEEFFPA---LERAVRHS---IPKPIA 168 (405)
T ss_pred EEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhc-CCEEEEEeCCCCCCCccC---HHHHHhhc---cccceE
Confidence 99999999999999999999999999999999998888877 999999998765555444 44444321 137899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++..+.++.++.. ..+++++++||||+|
T Consensus 169 v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~SfSK~~ 240 (405)
T PRK09148 169 LIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPG--------AKDVTVEFTSMSKTF 240 (405)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCC--------ccCcEEEEecccccc
Confidence 999999999999999999999999999999999999999998776544445544311 235788999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|+||+|+||+++++. +.+.+.+... .++++.+.|.++..+|++. .+++++.++.++++++.+.+.|+++++.+.
T Consensus 241 ~~pGlR~G~~v~~~~-~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 316 (405)
T PRK09148 241 SMAGWRMGFAVGNER-LIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDVLVESFGRAGWDIP 316 (405)
T ss_pred CCcchheeeeeCCHH-HHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 999999999999554 4455544443 2347789999999999753 457888899999999999999999998888
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.|.+|+|+|++++..... .++.+++..+++++||.|.||..|+...++|+||+++ .+++.+.+++++|++++++..
T Consensus 317 ~p~~g~f~~~~l~~~~~~---~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~-~~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 317 PPAASMFAWAPIPEAFRH---LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV-ENEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred CCCeeEEEEEECCCccCC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999854321 1234677888878899999999997655789999998 589999999999999999999
Q ss_pred cccccc
Q 043923 433 TTLHNQ 438 (469)
Q Consensus 433 ~~~~~~ 438 (469)
+|+||-
T Consensus 393 ~~~~~~ 398 (405)
T PRK09148 393 ETLHNV 398 (405)
T ss_pred HHHhhc
Confidence 999874
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=415.27 Aligned_cols=366 Identities=20% Similarity=0.338 Sum_probs=293.5
Q ss_pred CCCCeeeeeccccccC-hH-HHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-
Q 043923 36 NPTGIIQMGLAENQLS-FD-LLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS- 112 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~- 112 (469)
++.++++|+.+.+..+ ++ .+....+.... .....|++..|.++||+++|+++++.++ +.++++
T Consensus 31 ~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lR~~ia~~l~~~~~--~~~~~~~ 96 (403)
T PRK08636 31 AGEDIIDFSMGNPDGPTPQHIIDKLCESAQK------------PKTHGYSVSKGIYKLRLAICNWYKRKYN--VDLDPET 96 (403)
T ss_pred cCCCEEEcCCcCCCCCCCHHHHHHHHHHhcC------------CccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCC
Confidence 4457899999876653 33 34333332210 1356899999999999999999988766 456787
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc-CCc
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR-HLK 191 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~-~~~ 191 (469)
+|++|+|+++++..++.+++++||.|++++|+|+.+...+... |++++++|++.+++|.+|++.+...+++..+. .++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 175 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILA-GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPK 175 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEeccccccCccChhhhhhHHHHHHhhccCC
Confidence 7999999999999999999999999999999999999998887 99999999865567889988776555543322 347
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
+++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++....++..+.. ..+++++++|||
T Consensus 176 ~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~--------~~~~~i~~~S~S 247 (403)
T PRK08636 176 PKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEG--------AKDVAVESYTLS 247 (403)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCC--------ccccEEEEEecc
Confidence 899999999999999999999999999999999999999999998776544455555421 235788899999
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
|+||+||+|+||+++++. +.+.+.+... ...++++.|.++..++... .+++++.++.++++++.+.+.|++.|+
T Consensus 248 K~~~~~GlRiG~iv~~~~-li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 323 (403)
T PRK08636 248 KSYNMAGWRVGFVVGNKK-LVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDVLIESFANAGW 323 (403)
T ss_pred cccCCccceeeeeeCCHH-HHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999655 4444444432 2346677888877776532 567888999999999999999999888
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
++..+.+|+|+|++++..... .++.+++..+++++||.|.||..|+..+++++||+++ .+++++++++++|+++++
T Consensus 324 ~~~~p~~g~~~~~~l~~~~~~---~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~~~~rl~~~l~ 399 (403)
T PRK08636 324 ELQKPRASMFVWAKIPEPARH---LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI-ENENRIRQAARNIKKFLK 399 (403)
T ss_pred cccCCCcceEEEEECCCccCC---CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 888899999999999854321 1234677788888899999999998766789999998 599999999999999997
Q ss_pred hhc
Q 043923 430 SIT 432 (469)
Q Consensus 430 ~~~ 432 (469)
+++
T Consensus 400 ~~~ 402 (403)
T PRK08636 400 ELE 402 (403)
T ss_pred hhc
Confidence 643
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=419.40 Aligned_cols=370 Identities=21% Similarity=0.318 Sum_probs=296.1
Q ss_pred CCCeeeeecccccc-----ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 37 PTGIIQMGLAENQL-----SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 37 ~~~~i~L~~~~n~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
..++|+|+.|++.+ +++.+.+.+.+.... .....|++..|.++||+++|++++++++ +++++
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lR~aiA~~~~~~~~--~~~~~ 131 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS-----------GKGNSYGPGAGILPARRAVADYMNRDLP--HKLTP 131 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCChHHHHHHHHHHHHHhcC--CCCCc
Confidence 45799999997763 233455554442110 2245798889999999999999998766 45789
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
++|++|+|++++|..++.++++|||.|++++|+|+.|...+... |++++.+++.++++|.+|++++++++++ +
T Consensus 132 ~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~l~~~~~~~~d~~~l~~~~~~------~ 204 (462)
T PLN02187 132 EDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYS-GLEVRKFDLLPEKEWEIDLEGIEAIADE------N 204 (462)
T ss_pred ccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHc-CCEEEEEeCccccCCccCHHHHHHhcCC------C
Confidence 99999999999999999999999999999999999998888877 9999999987667899999999988754 7
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
+++++++|||||||.+++.+++++|+++|++||++||+||+|.++.|++..+.++..+.. ..++++++|||
T Consensus 205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~---------~~~vi~l~SfS 275 (462)
T PLN02187 205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS---------IVPVLTLAGIS 275 (462)
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhcc---------CCcEEEEecch
Confidence 889999999999999999999999999999999999999999998887655556555422 24699999999
Q ss_pred cccCCCcceEEEEEecCH-HH---HHHHHHhcccc----cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043923 272 KDLGLPGFRVGAIYSNDD-MV---VAAATKMSSFG----LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSG 343 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~-~~---~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 343 (469)
|+|++||+|+||++++++ .+ .+.+......+ .++.+.|.++.++|.+.. .+++++.++.++++++.+.+.
T Consensus 276 K~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l~~~ 353 (462)
T PLN02187 276 KGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLVCDR 353 (462)
T ss_pred hhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998532 22 22333333222 247899999999997532 567899999999999999999
Q ss_pred HHhcCC-c-eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHH
Q 043923 344 LEKAGI-S-CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 421 (469)
Q Consensus 344 L~~~g~-~-v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l 421 (469)
|++++. . +..|.+|+|+|++++..... ...++.+++.++++++||.+.||+.|+ .++|+||+++. +++.+++++
T Consensus 354 L~~~~~~~~~~~P~gg~fl~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg--~~~~iRis~~~-~~e~l~~al 429 (462)
T PLN02187 354 LKDIPCVVCPKKPESCTYLLTKLELSLMD-NIKDDIDFCVKLAREENLVFLPGDALG--LKNWMRITIGV-EAHMLEDAL 429 (462)
T ss_pred HhhCCCCcCCCCCCEeEEEEeecChhhCC-CCCCHHHHHHHHHhhCCEEEECccccC--CCCeEEEEeCC-CHHHHHHHH
Confidence 998753 2 34678899999988632111 111344677888889999999999996 37899999985 899999999
Q ss_pred HHHHHHHHhhcccccccccccc
Q 043923 422 QRLKAFVDSITTTLHNQSNHQS 443 (469)
Q Consensus 422 ~~L~~~l~~~~~~~~~~~~~~~ 443 (469)
++|+++++++.|+.-+ +++|
T Consensus 430 ~rL~~~l~~~~~~~~~--~~~~ 449 (462)
T PLN02187 430 ERLKGFCTRHAKKTET--ETNS 449 (462)
T ss_pred HHHHHHHHHhhhcccc--cccc
Confidence 9999999988885543 4444
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=414.31 Aligned_cols=358 Identities=16% Similarity=0.283 Sum_probs=289.8
Q ss_pred CCCeeeeeccccc-c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-Cc
Q 043923 37 PTGIIQMGLAENQ-L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SK 113 (469)
Q Consensus 37 ~~~~i~L~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~ 113 (469)
+.+.|+|+.+.+. . +++.+.+.+.+.... .....|++..|.++||++||+++.++++ +++++ ++
T Consensus 38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~LR~aia~~l~~~~g--~~~~~~~~ 104 (405)
T PRK06207 38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVER-----------GGVQAYTEYRGDADIRELLAARLAAFTG--APVDAADE 104 (405)
T ss_pred CCCceecCCcCCCCCCCCHHHHHHHHHHHhc-----------CCCccCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCC
Confidence 5678999987654 3 344455544432110 1245799999999999999999998877 44677 89
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc---CCCCcccCHHHHHHHHHHHHhcCC
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT---SLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~---~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
|++|+|+++++..++.+++++||.|++++|+|+.+...+... |++++.++++ .+.+|.+|++++++++++
T Consensus 105 I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~------ 177 (405)
T PRK06207 105 LIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEMVPVQLDYLSADKRAGLDLDQLEEAFKA------ 177 (405)
T ss_pred EEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEeccccCcccCCCcCHHHHHHhhhh------
Confidence 999999999999999999999999999999999999888877 9999999986 334688999999998865
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.|++..+.++..+.. ..+++++++||
T Consensus 178 ~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~--------~~~~vi~i~Sf 249 (405)
T PRK06207 178 GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPI--------DPENVITIMGP 249 (405)
T ss_pred cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCC--------CcCcEEEEecc
Confidence 7889999999999999999999999999999999999999999998887654444443311 35799999999
Q ss_pred ccccCCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 043923 271 SKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA- 347 (469)
Q Consensus 271 SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 347 (469)
||+||+||+|+||+++++. +.+.+...... .+.+.+.|.++..+|.+. ..++++.++.++++++.+.+.|+++
T Consensus 250 SK~~~lpGlRiG~ii~~~~-l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~ 325 (405)
T PRK06207 250 SKTESLSGYRLGVAFGSPA-IIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP---DGWMKDRIARHQAIRDDLLRVLRGVE 325 (405)
T ss_pred hhhccCcccceEEEEcCHH-HHHHHHHHHhHhccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999998654 44444444332 235678999999999764 2235666677788889999999887
Q ss_pred CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 348 GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 348 g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
++++.+|++|+|+|++++... .+..+++..+++++||.|.||..|+...++++||+++. +++++++++++|+++
T Consensus 326 ~~~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~ 399 (405)
T PRK06207 326 GVFVRAPQAGSYLFPRLPRLA-----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQL 399 (405)
T ss_pred CceecCCCeeEEEEEeCcccC-----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 788888999999999997421 12335777777778999999999976667899999996 899999999999999
Q ss_pred HHhhc
Q 043923 428 VDSIT 432 (469)
Q Consensus 428 l~~~~ 432 (469)
+++.+
T Consensus 400 l~~~~ 404 (405)
T PRK06207 400 IERYR 404 (405)
T ss_pred HHHhh
Confidence 97653
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=413.67 Aligned_cols=353 Identities=22% Similarity=0.404 Sum_probs=294.2
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
.++|+|+.|.+.++ ++.+.+++.+... .....|++..|.++||++++++++++++ +.++++ +|+
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~~~~~~~I~ 119 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIR------------DGKNQYARGFGVPELNSAIAERFKKDTG--LVVDPEKEVT 119 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHh------------cCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 37899999998875 4566666655311 1235799999999999999999998876 456787 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+..++.+++++||.|++++|+|..|...++.. |++++.++++++ +|.+|++.+++.+.+ ++++|
T Consensus 120 vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~-~~~~~~~~l~~~~~~------~~k~i 191 (413)
T PLN00175 120 VTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKTVTLRPP-DFAVPEDELKAAFTS------KTRAI 191 (413)
T ss_pred EeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEECCcc-cCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999988887 999999999754 488999999988864 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++. +.++.++.. ..+++|+++||||.||
T Consensus 192 ~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~--------~~~~vi~i~SfSK~~~ 262 (413)
T PLN00175 192 LINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPG--------MYERTVTMNSLGKTFS 262 (413)
T ss_pred EecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCC--------CcCcEEEEecchhhcc
Confidence 9999999999999999999999999999999999999999877643 345555422 3478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+||+|+||+++++..+ ..+.+.. ..++++.+.|.++..+|++. +.++++.++.++++++.+.+.|+++|+++.+
T Consensus 263 ~~G~RiG~~v~~~~l~-~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 338 (413)
T PLN00175 263 LTGWKIGWAIAPPHLT-WGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEVGFKVYP 338 (413)
T ss_pred CcchheeeeEeCHHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCeecC
Confidence 9999999999966544 4343333 23457889999999999775 4568889999999999999999999999999
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~---~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
|++|+|+|++++... ..++.+++..+++++||.+.||+.|+.. +.+++||+++. +++++++++++|++++++
T Consensus 339 p~g~~f~~~~~~~~~----~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-~~e~l~~~~~rL~~~~~~ 413 (413)
T PLN00175 339 SSGTYFVMVDHTPFG----FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-DEETLRAAVERMKTKLKR 413 (413)
T ss_pred CCeeEEEEEeccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHhC
Confidence 999999999985210 1123478888888889999999988642 35799999995 899999999999998763
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=415.55 Aligned_cols=365 Identities=18% Similarity=0.248 Sum_probs=292.7
Q ss_pred CCCeeeeecccc---cc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAEN---QL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
..++++|+.|++ .+ +|+.+.+++.+.... .....|++..|.++||+++|++++++++ +.++++
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~ 97 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMD-----------DKSYGYCPTKGVLETREFLAELNNKRGG--AQITPD 97 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhc-----------CCCCCCCCCCCCHHHHHHHHHHHHhccC--CCCCHh
Confidence 346899999887 33 456666666553111 2345799999999999999999988766 457899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|++|+|++++|..++. ++++||.|++++|+|+.|........|++++.+|++++++|.+|+++++++++. .+++
T Consensus 98 ~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~----~~~~ 172 (433)
T PRK06855 98 DIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKY----NPSI 172 (433)
T ss_pred HEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhc----CCCc
Confidence 99999999999999985 789999999999999988654333238999999988767899999999998863 1267
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++++++|||||||.++|.+++++|+++|++||++||+||+|.++.|++..+.++.++.+ ..++|+++||||
T Consensus 173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~---------~~~~I~~~S~SK 243 (433)
T PRK06855 173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG---------DVPGIALKGISK 243 (433)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcC---------cCCeEEEecCcc
Confidence 89999999999999999999999999999999999999999998887655567666633 136799999999
Q ss_pred ccCCCcceEEEEEecC----HHHHHHHH---Hhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043923 273 DLGLPGFRVGAIYSND----DMVVAAAT---KMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGL 344 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~----~~~~~~~~---~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 344 (469)
.|++||+|+||+++++ ..+...+. ... ....++++.|.++..++.++.+ ++++++.++.++++++.+.+.|
T Consensus 244 ~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~L 322 (433)
T PRK06855 244 ELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKL 322 (433)
T ss_pred ccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999842 22222222 211 2234678999999999998766 7889999999999999999999
Q ss_pred Hhc-CCceecCCceEEEEEecccccccC----C-----------------hhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 345 EKA-GISCLKSNAGLFCWVDMRHLLRSN----T-----------------FEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 345 ~~~-g~~v~~~~~g~~~~v~~~~~~~~~----~-----------------~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
++. ++++.+|++|||+|+++++..... . ..++.+++..+++++||.+.||+.|+.. .
T Consensus 323 ~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~-~ 401 (433)
T PRK06855 323 KDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE-L 401 (433)
T ss_pred hcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC-C
Confidence 887 788889999999999998642000 0 0124467778888999999999999753 3
Q ss_pred CeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 403 GWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 403 ~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
.++|||++..+++++++++++|++++++
T Consensus 402 ~~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 402 NGFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred CceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 4599999977999999999999999975
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-51 Score=419.72 Aligned_cols=348 Identities=22% Similarity=0.361 Sum_probs=280.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCCcChHHHHhhhCC
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-EPGEAFLLPTPYYPGFDRDLKWRTG 157 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~~g 157 (469)
...|++..|.++||++||+++++++| +++++++|++|+|+++++..++++++ ++||.|++++|+|+.|...++.. |
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~-g 184 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDG--VPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLL-G 184 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcC--CCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHc-C
Confidence 45699999999999999999998766 55789999999999999999999998 79999999999999999999887 9
Q ss_pred CEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 158 VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 158 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
.+++.++++++++|.+|++++++++++..+.+.++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.
T Consensus 185 ~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~ 264 (481)
T PTZ00377 185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI 264 (481)
T ss_pred CEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence 99999999877889999999999997644444578999999999999999999999999999999999999999999988
Q ss_pred cCC-CCccchhhhhhccccccCCc---CCeEEEEccCccc-cCCCcceEEEEEe--cCHHHHHHHHHhc-ccccCcHHHH
Q 043923 238 FSS-PGFVSIMEILKDRNCENTQV---WNRVHIVYSLSKD-LGLPGFRVGAIYS--NDDMVVAAATKMS-SFGLVSSQTQ 309 (469)
Q Consensus 238 ~~~-~~~~s~~~~~~~~~~~~~~~---~~~~i~i~S~SK~-~g~~GlRiG~li~--~~~~~~~~~~~~~-~~~~~s~~~q 309 (469)
|++ ..+.++..+..++. .. ..++|+++||||+ +++||+|+||+++ .++.+.+.+.+.. ..++++.++|
T Consensus 265 ~~~~~~~~s~~~~~~~l~----~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q 340 (481)
T PTZ00377 265 YDGEKPFISFRKVLLELP----AEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQ 340 (481)
T ss_pred cCCCCCcccHHHHHHhhc----ccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHH
Confidence 853 34556555433210 01 1368999999997 5999999999987 2344544444443 3345788999
Q ss_pred HHHHHHhcCch-----h--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecc--ccccc----CChhH
Q 043923 310 YLLSALLSDKK-----F--TQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMR--HLLRS----NTFEA 375 (469)
Q Consensus 310 ~~~~~~l~~~~-----~--~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~--~~~~~----~~~~~ 375 (469)
.++..++.... + ..+++++.++.++++++.+.+.|+++ |+++.+|++|+|+|++++ ..... ....+
T Consensus 341 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~ 420 (481)
T PTZ00377 341 LMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAP 420 (481)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCc
Confidence 99999996421 1 13334445556899999999999988 899999999999998764 21110 00112
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHHHhhccc
Q 043923 376 EMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 376 ~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
+.+++..+++++||.+.||+.|+.. +++++||+++ .+++++++++++|++++++..++
T Consensus 421 ~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~-~~~e~l~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 421 DVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL-PPEEQIEEMVKKIKEFHESFMKK 479 (481)
T ss_pred HHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888999999999999853 4579999999 68899999999999999887663
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=411.80 Aligned_cols=353 Identities=20% Similarity=0.329 Sum_probs=287.0
Q ss_pred CCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-c
Q 043923 36 NPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-K 113 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~ 113 (469)
.+.++|+|+.+.+.++ ++.+.+++.+.... .....|++..|.++||+++|+++++.++ ++++++ +
T Consensus 30 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~~~~~~g--~~~~~~~~ 96 (389)
T PRK08068 30 EGHDVINLGQGNPDQPTPEHIVEALQEAAEN-----------PANHKYSPFRGYPFLKEAAADFYKREYG--VTLDPETE 96 (389)
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCcc
Confidence 3457899999977665 35566666553111 2245798889999999999999987766 446788 8
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++|+|+++++..++.+++++||+|++++|+|..|...++.. |++++.+|++.+++|.+|++++++++.+ +++
T Consensus 97 i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~------~~~ 169 (389)
T PRK08068 97 VAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALA-RAQFETMPLIAENNFLPDYTKIPEEVAE------KAK 169 (389)
T ss_pred EEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEeecccccCCCCCHHHHHHhccc------cce
Confidence 999999999999999999999999999999999999988887 9999999998666889999999988764 789
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++....+...... ..+++++++||||+
T Consensus 170 ~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~--------~~~~~i~~~S~SK~ 241 (389)
T PRK08068 170 LMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPG--------AKDVGIELYTLSKT 241 (389)
T ss_pred EEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCC--------ccCCEEEEecchhc
Confidence 9999999999999999999999999999999999999999987776533334433322 34688999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcccc--cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC 351 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v 351 (469)
||+||+|+||++++++ +.+.+.+....+ +.+++.|.++..++.+. .++++..++.++++++.+.+.|+++|+.+
T Consensus 242 ~g~~GlRiG~~~~~~~-l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~g~~~ 317 (389)
T PRK08068 242 FNMAGWRVAFAVGNES-VIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYESRRNAFISACREIGWEV 317 (389)
T ss_pred cCCccceeEeEecCHH-HHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 9999999999998554 545454444332 23455777777777653 35678889999999999999999999998
Q ss_pred ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 352 LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
.++.+|+|+|++++... +..++++.+++++||.|+||..|+..+++++||+++. +++.+..++++|+++
T Consensus 318 ~~~~g~~~~~v~~~~~~------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 386 (389)
T PRK08068 318 DAPKGSFFAWMPVPKGY------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGKL 386 (389)
T ss_pred cCCCeeEEEEEECCCCC------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence 89999999999997532 2346788888778999999999986667899999984 788888888888753
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=422.54 Aligned_cols=360 Identities=19% Similarity=0.314 Sum_probs=289.3
Q ss_pred CCeeeeecccc-c--c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAEN-Q--L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
.++|+|+.|.+ + + +|+.+.+++.+. +.....|++..|.++||++||+++.++.+ ..+++++
T Consensus 146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~-------------~~~~~~Y~~~~G~~~lReaia~~~~~~~~--~~~~~~~ 210 (517)
T PRK13355 146 THILKLNIGNPAPFGFRTPDEVVYDMAQQ-------------LTDTEGYSDSKGLFSARKAIMQYAQLKGL--PNVDVDD 210 (517)
T ss_pred CCeEEecCcCCCcCCCCCCHHHHHHHHHH-------------hhcCCCCCCCcChHHHHHHHHHHHHhcCC--CCCChhH
Confidence 47899999655 2 3 234444444432 12235799999999999999999977654 2468999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++|+|+++++..++.+++++||.|++++|+|+.|...+... |.+++.++++++++|.+|++++++++++ +++
T Consensus 211 I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~-g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~k 283 (517)
T PRK13355 211 IYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLA-GGTAVHYRCDEQSEWYPDIDDIRSKITS------RTK 283 (517)
T ss_pred EEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHC-CCEEEEeecCcccCCCCCHHHHHHhcCc------Cce
Confidence 999999999999999999999999999999999999888887 9999999998777899999999998865 889
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|+++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++.++.+ ...+++++||||+
T Consensus 284 ~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~---------~~~vi~~~S~SK~ 354 (517)
T PRK13355 284 AIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP---------DLFCVTFSGLSKS 354 (517)
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC---------CCeEEEEecchhh
Confidence 9999999999999999999999999999999999999999998887655567666633 1357788999999
Q ss_pred cCCCcceEEEEEec--CHH---HHHHHHHhcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 274 LGLPGFRVGAIYSN--DDM---VVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 274 ~g~~GlRiG~li~~--~~~---~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
|+++|+|+||++++ ... +.+.+..... ..+++.++|.++..+|.......+++...++ +.++++++.+.|+++
T Consensus 355 ~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~ 433 (517)
T PRK13355 355 HMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGR-VYEQRELVYNALNAI 433 (517)
T ss_pred ccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence 99999999999964 221 2222322222 2447889999999999764333556666544 445679999999988
Q ss_pred -CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 348 -GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 348 -g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
|+++.+|+++||+|++++..... ..++.+++.++++++||.|.||+.|+...++|+||+++ .+++++++++++|++
T Consensus 434 ~g~~~~~p~g~fy~~~~l~~~~~~--~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~-~~~~~l~~a~~rl~~ 510 (517)
T PRK13355 434 PGISAVKPKAAFYIFPKIDVKKFN--IHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL-PRLEDLEDAMDRLAD 510 (517)
T ss_pred CCcccCCCCeeeEEEeecCcccCC--CCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC-CCHHHHHHHHHHHHH
Confidence 89999999999999998742100 12244677888889999999999998667889999997 599999999999999
Q ss_pred HHHhhc
Q 043923 427 FVDSIT 432 (469)
Q Consensus 427 ~l~~~~ 432 (469)
++++++
T Consensus 511 ~~~~~~ 516 (517)
T PRK13355 511 FFSYYR 516 (517)
T ss_pred HHHHhh
Confidence 998664
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=410.42 Aligned_cols=353 Identities=18% Similarity=0.321 Sum_probs=287.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCC-CCCC-c
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVT-FDTS-K 113 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~-~~~~-~ 113 (469)
..++|+|+.|+++++ ++.+.+++.+. +.....|++..|.++||++||++++++++ +. ++++ +
T Consensus 28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~-------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~~ 92 (396)
T PRK09147 28 DLPPISLSIGEPKHPTPAFIKDALAAN-------------LDGLASYPTTAGLPALREAIAAWLERRYG--LPALDPATQ 92 (396)
T ss_pred CCCeEecCCCCCCCCCCHHHHHHHHHH-------------hhhhcCCCCCCCCHHHHHHHHHHHHHHhC--CCcCCccce
Confidence 457899999999885 56677776653 13456799999999999999999988776 44 6675 8
Q ss_pred EEEeCChHHHHHHHHHHhcCC---CCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCC
Q 043923 114 IVLTAGATSANETLMFCLAEP---GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~---gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
|++|+|+++++..++++++++ ||.|++++|+|..|...+... |++++.+|++++++|.+|++++++.+.+
T Consensus 93 i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~vp~~~~~~~~~d~~~l~~~~~~------ 165 (396)
T PRK09147 93 VLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLA-GAEPYFLNCDPANNFAPDFDAVPAEVWA------ 165 (396)
T ss_pred EEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhc-CCEEEEeccCccccCccCHHHHHHHHhh------
Confidence 999999999999999999999 999999999999999888877 9999999998777899999999887754
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC-CccchhhhhhccccccCCcCCeEEEEcc
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
+++++++||||||||.++|.+++++|+++|++|+++||+||+|.++.|++. ...+........ +.+..+++|+++|
T Consensus 166 ~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vi~~~S 242 (396)
T PRK09147 166 RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAEL---GRDDFKRLVVFHS 242 (396)
T ss_pred ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcccc---CccccccEEEEec
Confidence 789999999999999999999999999999999999999999999877653 222222111100 0013479999999
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
|||.||+||+|+||+++++..+ +.+.+... .++++++.|.++.+.+.+ .+++++.++.++++++.+.+.|.+.
T Consensus 243 ~SK~~~~~GlRiG~~~~~~~l~-~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~ 317 (396)
T PRK09147 243 LSKRSNVPGLRSGFVAGDAALL-KKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILAPV 317 (396)
T ss_pred cccccCCccceeeeecCCHHHH-HHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999965544 44433332 235788899887777754 3457888999999999999999885
Q ss_pred CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC------CCCCeEEEEeecCCHHHHHHHH
Q 043923 348 GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANMSEDTLKLSM 421 (469)
Q Consensus 348 g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~------~~~~~iRi~~~~~~~e~i~~~l 421 (469)
+.+..|++|+|+|++++. ++.+++.++++++||.+.||..|+. .+.+++||+++. +++++++++
T Consensus 318 -~~~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~l 387 (396)
T PRK09147 318 -LDVQLPDAGFYLWAKVPG--------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEAA 387 (396)
T ss_pred -cCCCCCCeeEEEEEECCC--------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHHH
Confidence 677778899999999971 1346778888888999999998863 235799999995 789999999
Q ss_pred HHHHHHHH
Q 043923 422 QRLKAFVD 429 (469)
Q Consensus 422 ~~L~~~l~ 429 (469)
++|+++++
T Consensus 388 ~rl~~~~~ 395 (396)
T PRK09147 388 ERIVDFCR 395 (396)
T ss_pred HHHHHHhc
Confidence 99999874
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=409.02 Aligned_cols=363 Identities=20% Similarity=0.283 Sum_probs=292.4
Q ss_pred CCCCCCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCC-
Q 043923 31 YDEVQNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVT- 108 (469)
Q Consensus 31 ~~~~~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~- 108 (469)
+.....+.++|+|+.|+|+++ ++.+.+.+.+.... .....|++ .|.++||+++|++++++++ +.
T Consensus 37 ~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~-----------~~~~~Y~~-~G~~~lr~aia~~~~~~~g--~~~ 102 (410)
T PRK06290 37 AKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKK-----------PENRGYAD-NGIQEFKEAAARYMEKVFG--VKD 102 (410)
T ss_pred HhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCC-CCcHHHHHHHHHHHHHHcC--CCc
Confidence 333334557899999999985 45566655542110 12456885 7999999999999988766 44
Q ss_pred CCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 109 FDTS-KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 109 ~~~~-~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
++++ +|++|+|+++++..++.+++++||.|+++.|+|+.|...++.. |++++.+|++++++|.+|++++++++.+
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~~~--- 178 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYY-GGEVYNLPLLEENNFLPDLDSIPKDIKE--- 178 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHc-CCEEEEEecCCCcCCcCCHHHHHHhhcc---
Confidence 6776 7999999999999999999999999999999999999888887 9999999998777888999999888764
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i 267 (469)
++++|+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++. ..++.++.. ..+++|++
T Consensus 179 ---~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~--------~~~~~I~i 246 (410)
T PRK06290 179 ---KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPG--------AKEVGVEI 246 (410)
T ss_pred ---cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCC--------ccccEEEE
Confidence 789999999999999999999999999999999999999999999877643 345444422 34678999
Q ss_pred ccCccccCCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 268 YSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 268 ~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
+||||.||+||+|+||+++++. +.+.+...... .+++.++|.++..+|++..+ +++.++.++++++.+.+.|+
T Consensus 247 ~SfSK~~g~~GlRiG~ii~~~~-l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~ 321 (410)
T PRK06290 247 HSLSKAYNMTGWRLAFVVGNEL-IVKAFATVKDNNDSGQFIAIQKAGIYALDHPEI----TEKIREKYSRRLDKLVKILN 321 (410)
T ss_pred eechhhcCCchhheEeEEeCHH-HHHHHHHHHhccccCCcHHHHHHHHHHhhCcHH----HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999654 44444444332 23456899999999987544 67788899999999999999
Q ss_pred hcCCceecCCceEEEEEeccccccc-CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC--CHHHHHHHHH
Q 043923 346 KAGISCLKSNAGLFCWVDMRHLLRS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM--SEDTLKLSMQ 422 (469)
Q Consensus 346 ~~g~~v~~~~~g~~~~v~~~~~~~~-~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~--~~e~i~~~l~ 422 (469)
+.|+.+.++++|+|+|++++..... ....+..++++.|+++.+|.+.||+.|+ +|+||+++.. ++++.+++++
T Consensus 322 ~~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~~~~ 397 (410)
T PRK06290 322 EVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDRILE 397 (410)
T ss_pred hCCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhHHHH
Confidence 9999999999999999999854311 0112345788999988788888988663 6999999853 7899999999
Q ss_pred HHHHHHHhhc
Q 043923 423 RLKAFVDSIT 432 (469)
Q Consensus 423 ~L~~~l~~~~ 432 (469)
+|++.|....
T Consensus 398 ~l~~~~~~~~ 407 (410)
T PRK06290 398 EIKRRLSDVE 407 (410)
T ss_pred HHHHHHhhcc
Confidence 9999886543
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=393.45 Aligned_cols=382 Identities=20% Similarity=0.334 Sum_probs=309.0
Q ss_pred cccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCc
Q 043923 10 CNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGL 88 (469)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~ 88 (469)
..+.+..+|+. |.++..-....+..+. |++|.+..+ |+++.+++++.... ....+|....|+
T Consensus 9 ~~~l~~~~~~v--w~e~~~la~e~~~~~~----LgqGfp~~~~P~fv~ea~~~~~~~-----------~~~~qYt~~~G~ 71 (420)
T KOG0257|consen 9 NRNLSTSKPYV--WTEINRLAAEHKVPNP----LGQGFPDFPPPKFVTEAAKNAAKE-----------PSTNQYTRGYGL 71 (420)
T ss_pred cccccccCCcH--HHHHHHHHHhcCCCCc----ccCCCCCCCCcHHHHHHHHHHhcc-----------chhccccccCCc
Confidence 34455555533 6666544432222221 999988886 57788888775321 236789999999
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc--
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-- 166 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-- 166 (469)
++|+++|++.+...++.. ....++|+||+|+.++|..++++++++||+|++.+|.|++|.....++ |...+.++..
T Consensus 72 p~L~~aL~k~~se~~~~~-~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~ma-G~tpv~v~~~~~ 149 (420)
T KOG0257|consen 72 PQLRKALAKAYSEFYGGL-LDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMA-GGTPVFVPLKPK 149 (420)
T ss_pred hHHHHHHHHHHHHHhccc-cCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhc-CCcceeeccccc
Confidence 999999999999876632 234567999999999999999999999999999999999999999988 9999999987
Q ss_pred ----CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 167 ----SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 167 ----~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
....|.+|.+.++.++++ ++|+|++|+||||||.++|+++|++|+++|++||+++|.||+|..+.|++..
T Consensus 150 ~g~~~s~~~~~D~~~le~~~t~------kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~ 223 (420)
T KOG0257|consen 150 EGNVSSSDWTLDPEELESKITE------KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNK 223 (420)
T ss_pred cccccCccccCChHHHHhhccC------CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCc
Confidence 567899999999999987 9999999999999999999999999999999999999999999999999887
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCch
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~ 320 (469)
+.++..+ + +.+++++.++|+||+||+.|||+||+++ ++.+.......... ..++++.|.+.+++++.+.
T Consensus 224 h~r~asl-P-------gm~ertitvgS~gKtf~~TGWrlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~ 294 (420)
T KOG0257|consen 224 HIRIASL-P-------GMYERTITVGSFGKTFGVTGWRLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALEL 294 (420)
T ss_pred ceeeecC-C-------chhheEEEeccccceeeeeeeeeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhh
Confidence 8888877 5 3789999999999999999999999999 55554444443322 2377888888777766543
Q ss_pred hh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc---C---ChhHHHHHHHHHHHhCCe
Q 043923 321 FT-----QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS---N---TFEAEMELWKKIVYDVKL 389 (469)
Q Consensus 321 ~~-----~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~---~---~~~~~~~l~~~ll~~~GI 389 (469)
.+ ..++....+.|+++|+.|.+.|.++|+++..|++++|+|++++..... . ...++..++.+++++.|+
T Consensus 295 ~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv 374 (420)
T KOG0257|consen 295 ACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGV 374 (420)
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcE
Confidence 10 134566899999999999999999999999999999999999811110 0 112455788999999999
Q ss_pred EEeCCCCCCCCC-----CCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 390 NISPGSSCHCTE-----PGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 390 ~v~pg~~f~~~~-----~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
.+.|++.|+..+ .+++|++++. +++.++.++++|++
T Consensus 375 ~~IP~saF~s~~~~~~~~~~~r~~~~k-~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 375 VVIPPSAFGSREHIKVAERLVRFCFCK-ADETLRKAIERLKK 415 (420)
T ss_pred EEeCchhcCCchhhHHHHHHHHHHHHh-hHHHHHHHHHHHhh
Confidence 999999999643 3578999985 88999999999883
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=407.34 Aligned_cols=350 Identities=23% Similarity=0.376 Sum_probs=289.2
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
.++++|+.|++.++ ++.+.+++.+.... .....|+++.|.++||+++|+|+++.++ ++++++ +|+
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~~vi 95 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAEN-----------PENHRYPSYEGMLAYRQAVADWYKRRFG--VELDPETEVL 95 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCeEE
Confidence 47899999998875 45566665543111 1246799999999999999999998766 345666 699
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|++++|+|+.+...+... |++++.+|++.+++|.+|++++++++.+ ++++|
T Consensus 96 ~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-G~~v~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 168 (383)
T TIGR03540 96 SLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFA-GGEPYEMPLKEENGFLPDFDAIPEDIAK------KAKLM 168 (383)
T ss_pred ECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhc-CCEEEEEecCcccCCccCHHHHHhhccc------cceEE
Confidence 9999999999999999999999999999999999888877 9999999998666788899999888764 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++....++.++.. ..+++++++||||.||
T Consensus 169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~--------~~~~~i~~~SfSK~~g 240 (383)
T TIGR03540 169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDG--------AKDVGIEFHSLSKTYN 240 (383)
T ss_pred EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCC--------cccCEEEEEecccccC
Confidence 99999999999999999999999999999999999999998776544455544421 2367899999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+||+|+||++++++ +.+.+..... ...++.+.|.++..++.+. .+++++.++.++++++.+.+.|++.|+++.+
T Consensus 241 ~~GlRiG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 316 (383)
T TIGR03540 241 MTGWRIGMAVGNAD-LIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKIGIDVEK 316 (383)
T ss_pred CccceeeEEeCCHH-HHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCEecC
Confidence 99999999999654 4444443332 2346778899999999774 5668888999999999999999999999999
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
+.+|+|+|++++... +..+++.++++++||.|+||+.|+..+++++||+++ .+++++.+++++|++
T Consensus 317 ~~~~~~~~~~l~~~~------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~-~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 317 PKATFYVWVPVPEGY------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT-VPDERLEEAVARIKK 382 (383)
T ss_pred CCcceEEEEECCCCC------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec-CCHHHHHHHHHHHhh
Confidence 999999999997532 234678888888899999999997655789999998 488999999988865
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=407.10 Aligned_cols=363 Identities=21% Similarity=0.339 Sum_probs=290.4
Q ss_pred CCCCeeeeeccccc----c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 36 NPTGIIQMGLAENQ----L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 36 ~~~~~i~L~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
..+++|+|++|++. + +++.+.+++.+.... .....|++..|.++||+++|++++++++ ++++
T Consensus 30 ~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~ 96 (409)
T PLN00143 30 DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRS-----------AKFNSYAPTGGILPARRAIADYLSNDLP--YQLS 96 (409)
T ss_pred CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCC
Confidence 35579999999986 4 456676766553111 2245698889999999999999988766 4578
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCC
Q 043923 111 TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
+++|++|+|+++++..++.+++++||.|+++.|+|+.|...+... |++++.++++.+++|.+|++++++++++
T Consensus 97 ~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------ 169 (409)
T PLN00143 97 PDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFH-HLEIRHFDLLPEKGWEVDLDAVEAIADE------ 169 (409)
T ss_pred HhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHc-CCEEEEEeccCCCCCcCCHHHHHHhccc------
Confidence 999999999999999999999999999999999999999888877 9999999986556889999999987754
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+ . ..+++++++||
T Consensus 170 ~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~-~--------~~~~vi~~~Sf 240 (409)
T PLN00143 170 NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLF-A--------SIVPVITLGSI 240 (409)
T ss_pred CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhh-c--------ccCcEEEEccc
Confidence 78899999999999999999999999999999999999999999988865443444433 2 33689999999
Q ss_pred ccccCCCcceEEEEEec-CHHH------HHHHHHhcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHH
Q 043923 271 SKDLGLPGFRVGAIYSN-DDMV------VAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVS 342 (469)
Q Consensus 271 SK~~g~~GlRiG~li~~-~~~~------~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 342 (469)
||.|++||+|+||++++ ++.+ .+.+.+... ...++.+.|.++.++|.+.. ..++++.++.++++++.+.+
T Consensus 241 SK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 318 (409)
T PLN00143 241 SKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINILRAALAFCYD 318 (409)
T ss_pred hhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999984 3222 222222222 22357799999999997642 45678888888888899999
Q ss_pred HHHhcCCce--ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHH
Q 043923 343 GLEKAGISC--LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 420 (469)
Q Consensus 343 ~L~~~g~~v--~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~ 420 (469)
.|.+++..+ ..|++|+|+|++++..... ...++.+++.++++++||.+.||..|+ .++|+||+++. ++++++++
T Consensus 319 ~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~--~~~~iRi~~~~-~~~~l~~a 394 (409)
T PLN00143 319 KLKEIPCIMCPQKAEGAFFALVKLNLLLLE-DIEDDMEFCLKLAKEESLIILPGVTVG--LKNWLRITFAV-EQSSLEDG 394 (409)
T ss_pred HHhcCCCCCCCCCCCeeEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEEcC-CHHHHHHH
Confidence 998874332 3678999999999742110 111244677788888999999999996 36899999994 89999999
Q ss_pred HHHHHHHHHhhcc
Q 043923 421 MQRLKAFVDSITT 433 (469)
Q Consensus 421 l~~L~~~l~~~~~ 433 (469)
+++|+++++++.+
T Consensus 395 l~rl~~~l~~~~~ 407 (409)
T PLN00143 395 LGRLKSFCGRHAK 407 (409)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987655
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=408.24 Aligned_cols=365 Identities=22% Similarity=0.367 Sum_probs=298.2
Q ss_pred CCCCeeeeeccccc-----cChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcC----CC
Q 043923 36 NPTGIIQMGLAENQ-----LSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRG----NK 106 (469)
Q Consensus 36 ~~~~~i~L~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~----~~ 106 (469)
+..++|+|+.|.+. .+++.+.+++.+.... .....|++..|.++||++||++++++++ .+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~ 99 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS-----------QECNGYPPTVGSPEAREAVATYWRNSFVHKESLK 99 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc-----------CCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc
Confidence 55689999999875 3567777777653211 2346799999999999999999987543 13
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 107 VTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 107 ~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
+.+++++|++|+|+++++..++.+++++||.|+++.|+|..+...++.. |++++.+|++.+.+|.+|++++++++++
T Consensus 100 ~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~-- 176 (412)
T PTZ00433 100 STIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAY-GIEMRFYNCRPEKDWEADLDEIRRLVDD-- 176 (412)
T ss_pred CCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHc-CCEEEEEecCccccCcCCHHHHHHHhcc--
Confidence 4578999999999999999999999999999999999999999988887 9999999997666788999999988765
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++++|+++|||||||.+++.+++++|+++|++||++||+||+|.++.|++..+.++..+.. ..++++
T Consensus 177 ----~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---------~~~~i~ 243 (412)
T PTZ00433 177 ----RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDT---------TVPRVI 243 (412)
T ss_pred ----CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccC---------CCceEE
Confidence 7899999999999999999999999999999999999999999998776654455555422 235789
Q ss_pred EccCccccCCCcceEEEEEe--cC---HHHHHHHHHhcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYS--ND---DMVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKL 340 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~--~~---~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 340 (469)
++||||+||+||+|+||+++ ++ +.+.+.+.+... .+.++.+.|.++..++.+. . +.++++.++.++++++.+
T Consensus 244 ~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~~~~~~~~~~~~r~~l 321 (412)
T PTZ00433 244 LGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT-P-QEHLEQIVAKLEEGAMVL 321 (412)
T ss_pred EccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC-c-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 21 334444444333 3458899999999998764 2 667889999999999999
Q ss_pred HHHHHhc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHH
Q 043923 341 VSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419 (469)
Q Consensus 341 ~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~ 419 (469)
.+.|++. |+.+.+|++|+|+|++++...-. ...++.++++.+++++||.|.||+.|+. ++++||+++. .++++++
T Consensus 322 ~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~l~~ 397 (412)
T PTZ00433 322 YNHIGECIGLSPTMPRGSMFLMSRLDLEKFR-DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVEVLRE 397 (412)
T ss_pred HHHHhcCCCCcccCCCeeEEEEEEechhhcC-CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecC-CHHHHHH
Confidence 9999885 78888899999999998741100 0012346888888778999999999964 6799999985 7899999
Q ss_pred HHHHHHHHHHhhcc
Q 043923 420 SMQRLKAFVDSITT 433 (469)
Q Consensus 420 ~l~~L~~~l~~~~~ 433 (469)
++++|.+++++.+|
T Consensus 398 al~~l~~~~~~~~~ 411 (412)
T PTZ00433 398 AVERIKAFCERHKK 411 (412)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987764
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=406.92 Aligned_cols=350 Identities=22% Similarity=0.359 Sum_probs=288.3
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
.++|+|+.|+|+++ ++.+.+++.+.... .....|++..|.++||+++|++++++++ +.++++ +|+
T Consensus 31 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~ii 97 (385)
T PRK09276 31 VDVISLGIGDPDLPTPDHIIEAMCKAVED-----------PENHQYPSYEGMLEFRKAVADWYKRRFG--VELDPETEVI 97 (385)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46899999999875 45666666553111 1245799999999999999999998766 346676 599
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||+|++++|+|..|...++.. |++++.+|++.+.+|.+|++++++.+.+ ++++|
T Consensus 98 ~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 170 (385)
T PRK09276 98 SLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFA-GGEPYFMPLKEENGFLPDLDAIPEDVAK------KAKLM 170 (385)
T ss_pred EccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHc-CCEEEEEecCCCCCCcCCHHHHHHhccc------cceEE
Confidence 9999999999999999999999999999999999888877 9999999997666788999999887754 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++....++.++.. ..+++|+++||||.||
T Consensus 171 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~g 242 (385)
T PRK09276 171 FINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPG--------AKDVGIEFHSLSKTYN 242 (385)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCC--------CcCCEEEEecchhhcC
Confidence 99999999999999999999999999999999999999998776544455554421 2367899999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+||+|+||++++++ +.+.+.+.... ..++.+.|.++..++.+. .+++++.++.++++++.+.+.|++.|+++.+
T Consensus 243 ~~GlRiG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 318 (385)
T PRK09276 243 MTGWRIGFAVGNAD-LIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKLGLEVEP 318 (385)
T ss_pred CcchhheeeeCCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 99999999999655 44444443322 235668888888888752 5678888999999999999999999998888
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
+.+|+|+|++++... +..+++.++++++||.+.||..|+..+++++||+++ .+++++.+++++|++
T Consensus 319 ~~~~~~~~v~~~~~~------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~-~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 319 PKATFYVWAPVPKGY------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT-VPDERIEEAVERIKK 384 (385)
T ss_pred CCcceEEEEECCCCC------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC-CCHHHHHHHHHHHhh
Confidence 899999999998532 234677888878899999999997656789999998 488999999998864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=405.38 Aligned_cols=349 Identities=19% Similarity=0.379 Sum_probs=288.5
Q ss_pred CCeeeeeccccccCh-HHH-HHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 38 TGIIQMGLAENQLSF-DLL-ESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
.++|||+.|++++++ +.+ .+++.... .....|++..|.++||+++|+++++.++ +.+++++|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~i~ 93 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAK-------------KGHTRYTDSGGDVELIEEIIKYYSKNYD--LSFKRNEIM 93 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHh-------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 367999999998864 333 33333211 2346799999999999999999988776 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+..++.+++++||.|++++|+|..|...+... |.+++.+|++.+++|.+|++.+++++++ ++++|
T Consensus 94 it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 166 (384)
T PRK06348 94 ATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMV-GGKPIILETYEEDGFQINVKKLEALITS------KTKAI 166 (384)
T ss_pred EcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc-CCEEEEecCCcCcCCcCCHHHHHHhhCc------CccEE
Confidence 9999999999999999999999999999999999999887 9999999986556788999999988764 78899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++||||||.++|.+++++|+++|++|+++||+||+|.++.|+.. ..++.++.. ..+++++++||||+||
T Consensus 167 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~--------~~~~vi~~~SfSK~~~ 237 (384)
T PRK06348 167 ILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAG--------MPERTITFGSFSKDFA 237 (384)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCC--------CcCcEEEEecchhccC
Confidence 9999999999999999999999999999999999999999877642 334444421 2478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL 352 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~ 352 (469)
+||+|+||+++++. +.+.+..... .++++++.|.++..++... ++++++.++.++++++.+.+.|+++ ++++.
T Consensus 238 l~GlRiG~~v~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~ 313 (384)
T PRK06348 238 MTGWRIGYVIAPDY-IIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESIPNLSLH 313 (384)
T ss_pred CccccceeeecCHH-HHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 99999999999654 4444444432 2457889999999998753 5667888999999999999999887 67888
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
++++|+|+|++++... .++.+++..+++++||.|.||+.|+..+++++||+++ .+++++++++++|+++
T Consensus 314 ~p~gg~~~~~~~~~~~-----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 314 PPKGSIYAFINIKKTG-----LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT-VGIEVLEEAFNRIEKM 382 (384)
T ss_pred cCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec-CCHHHHHHHHHHHHhh
Confidence 8999999999997311 1234678888878899999999998666789999998 5899999999999764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=408.21 Aligned_cols=362 Identities=22% Similarity=0.364 Sum_probs=295.4
Q ss_pred CCCeeeeeccccc----cC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 37 PTGIIQMGLAENQ----LS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 37 ~~~~i~L~~~~n~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
..++|+|+.|++. ++ ++.+.+++.+.... .....|++..|.++||+++|+++++.++ +++++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 117 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRS-----------GKYNSYSTCVGLLPARRAIAEYLSRDLP--YELST 117 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHc-----------CcCCCCCCCccCHHHHHHHHHHHhhccC--CCCCh
Confidence 4479999999874 32 35566655542110 2245799989999999999999987766 45789
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
++|++|+|+++||.+++.++.++||+|+++.|+|+.|...+... |++++.+++.++.+|.+|++.+++.+++ +
T Consensus 118 ~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~ 190 (430)
T PLN00145 118 DDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFS-GLEVRHFDLLPERGWEVDLEGVEALADE------N 190 (430)
T ss_pred hhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeeCCcccCCcCCHHHHHHHhCc------C
Confidence 99999999999999999999999999999999999998888777 9999999987667899999999988765 7
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+. ...++|+++|||
T Consensus 191 ~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~---------~~~~vi~~~S~S 261 (430)
T PLN00145 191 TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFG---------EVAPVLTLGSIS 261 (430)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhc---------ccCcEEEEeccc
Confidence 89999999999999999999999999999999999999999999888765555655442 336899999999
Q ss_pred cccCCCcceEEEEEec-CHHHH------HHHHHhcccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043923 272 KDLGLPGFRVGAIYSN-DDMVV------AAATKMSSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSG 343 (469)
Q Consensus 272 K~~g~~GlRiG~li~~-~~~~~------~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 343 (469)
|.|++||+|+||++++ +..+. ..+......+ .++.+.|.++..+|+... ++++++.++.++++++.+.+.
T Consensus 262 K~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 339 (430)
T PLN00145 262 KRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICYEK 339 (430)
T ss_pred cccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999974 22221 2233333322 357899999999998642 567888999999999999999
Q ss_pred HHhc-CCce-ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHH
Q 043923 344 LEKA-GISC-LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 421 (469)
Q Consensus 344 L~~~-g~~v-~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l 421 (469)
|+++ ++.+ ..|++|+|+|++++..... ...++.+++.++++++||.+.||..|+. ++|+||+++. +++.+++++
T Consensus 340 L~~~~g~~~~~~P~ga~y~~v~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~-~~~~l~~al 415 (430)
T PLN00145 340 IKEIKCITCPHKPEGSMFVMVKLDLSCLS-GIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAI-DPPSLEDGL 415 (430)
T ss_pred HhcCCCCCCCcCCCeeeEEEeccChhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHH
Confidence 9987 7775 4789999999998742110 1113456888899999999999999974 6899999994 899999999
Q ss_pred HHHHHHHHhhcc
Q 043923 422 QRLKAFVDSITT 433 (469)
Q Consensus 422 ~~L~~~l~~~~~ 433 (469)
++|++++.+++|
T Consensus 416 ~rl~~~~~~~~~ 427 (430)
T PLN00145 416 ERLKSFCLRHAK 427 (430)
T ss_pred HHHHHHHHHhcc
Confidence 999999998887
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=406.57 Aligned_cols=368 Identities=21% Similarity=0.359 Sum_probs=297.7
Q ss_pred CCCCCCCCCeeeeeccccc----c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCC
Q 043923 31 YDEVQNPTGIIQMGLAENQ----L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGN 105 (469)
Q Consensus 31 ~~~~~~~~~~i~L~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~ 105 (469)
.....++.++|+|++|++. + +++.+.+++.+.... .....|++..|.++||+++++++++.++
T Consensus 24 ~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g- 91 (409)
T PLN02656 24 IDDEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQS-----------NKFNGYAPTVGLPQARRAIAEYLSRDLP- 91 (409)
T ss_pred ccccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHHHhcC-
Confidence 3344567799999999986 3 356666666553110 2346798889999999999999998766
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHH
Q 043923 106 KVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLA 185 (469)
Q Consensus 106 ~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 185 (469)
+.+++++|++|+|+++++..++.+++++||.|++++|+|+.|...+... |++++.+|++.+.+|.+|++.+++.+++
T Consensus 92 -~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~- 168 (409)
T PLN02656 92 -YKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFR-HLEVRYVDLLPEKGWEVDLDAVEALADQ- 168 (409)
T ss_pred -CCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHc-CCEEEEEeCCCcCCCCCCHHHHHHHhcc-
Confidence 4578999999999999999999999999999999999999998777777 9999999987556788999999988764
Q ss_pred HhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEE
Q 043923 186 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i 265 (469)
++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++..+.++..+ . ...++|
T Consensus 169 -----~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~--------~~~~vi 234 (409)
T PLN02656 169 -----NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVF-G--------SIVPVL 234 (409)
T ss_pred -----CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHh-c--------ccCcEE
Confidence 78899999999999999999999999999999999999999999988876544454444 1 336899
Q ss_pred EEccCccccCCCcceEEEEEecC-------HHHHHHHHHhcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHH
Q 043923 266 IVYSLSKDLGLPGFRVGAIYSND-------DMVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRH 337 (469)
Q Consensus 266 ~i~S~SK~~g~~GlRiG~li~~~-------~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 337 (469)
+++||||+|++||+|+||+++++ +.+.+.+.+... ...++.+.|.++..+|++.. ..++++.++.+++++
T Consensus 235 ~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r 312 (409)
T PLN02656 235 TLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINILKQSS 312 (409)
T ss_pred EEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHH
Confidence 99999999999999999999953 345554544433 33478899999999997632 567888899999999
Q ss_pred HHHHHHHHhcC-Cc-eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHH
Q 043923 338 RKLVSGLEKAG-IS-CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 415 (469)
Q Consensus 338 ~~l~~~L~~~g-~~-v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e 415 (469)
+.+.+.|++++ +. +.+|++|+|+|++++..... ...++.+++..+++++||.+.||+.|+. ++|+||+++. +++
T Consensus 313 ~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~-~~e 388 (409)
T PLN02656 313 DICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAA-DPS 388 (409)
T ss_pred HHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCC-CHH
Confidence 99999999873 33 35788999999999742111 0012335666777888999999999963 6899999995 899
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 043923 416 TLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 416 ~i~~~l~~L~~~l~~~~~ 433 (469)
++++++++|++++.++..
T Consensus 389 ~l~eal~rl~~~~~~~~~ 406 (409)
T PLN02656 389 SLEEALGRIKSFYLRHSK 406 (409)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999986654
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=406.29 Aligned_cols=354 Identities=21% Similarity=0.411 Sum_probs=292.2
Q ss_pred CCeeeeeccccccCh-HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
.++|+|+.|+|++++ +.+.+++.+... .....|++..|.++||+++|++++++++ +.++++ +|+
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 85 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLE------------QGYTSYTANAGLLELRQEIAKYLKKRFA--VSYDPNDEII 85 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 478999999998854 445555544211 1245698888999999999999998876 346675 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+.+++.+++++||.|++++|+|+.|...+... |.+++.++.+.+++|.+|++++++++.+ +++++
T Consensus 86 ~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 158 (378)
T PRK07682 86 VTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLA-GGVPVPVATTLENEFKVQPAQIEAAITA------KTKAI 158 (378)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEeecCCccCCCCCHHHHHhhcCc------ccEEE
Confidence 9999999999999999999999999999999999888877 9999999987556788999999998764 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++. +.++..+.+ ..+++++++||||.||
T Consensus 159 ~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~--------~~~~~i~~~S~SK~~~ 229 (378)
T PRK07682 159 LLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKG--------MRERTILISGFSKGFA 229 (378)
T ss_pred EEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhccc--------ccCCEEEEecCccccc
Confidence 9999999999999999999999999999999999999999877653 334444422 3468999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+||+|+||++++++ +.+.+.... ..++++.+.|.++..+|++.. .++++.++.++++++.+.+.|+++|+++.+
T Consensus 230 ~~GlR~G~~~~~~~-~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 305 (378)
T PRK07682 230 MTGWRLGFIAAPVY-FSEAMLKIHQYSMMCAPTMAQFAALEALRAGN---DDVIRMRDSYRKRRNFFVTSFNEIGLTCHV 305 (378)
T ss_pred ChhhhhhhhhcCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHCCCccCC
Confidence 99999999999655 444443332 224478899999999998752 347888899999999999999999999889
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
|++|+|+|+.++... .+..+++..+++++||.+.||..|+...++++||+++. +++++++++++|++++++.
T Consensus 306 p~g~~~~~~~~~~~~-----~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 306 PGGAFYAFPSISSTG-----LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred CCeeEEEEEeccCCC-----CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 999999999885311 12346778888788999999999976567899999996 8999999999999998754
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=404.21 Aligned_cols=354 Identities=19% Similarity=0.337 Sum_probs=286.0
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i 114 (469)
..++|+|+.|+|+++ ++.+.+++++. ......|+++.|.++||+++|++++++++.+..++++ +|
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~-------------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i 93 (393)
T TIGR03538 27 SKPPIALSIGEPKHPTPAFVLEALREN-------------LHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHV 93 (393)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHH-------------hhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceE
Confidence 357899999999985 56677777653 1335679999999999999999998887643236775 89
Q ss_pred EEeCChHHHHHHHHHHhcCCCCE--EEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 115 VLTAGATSANETLMFCLAEPGEA--FLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~--Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
++|+|+++++..++.+++++||. |++++|+|..|...+... |++++.+|++++++|.+|++++++++.+ ++
T Consensus 94 ~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~ 166 (393)
T TIGR03538 94 LPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLA-GAEPYFLNCTAENGFLPDFDAVPESVWR------RC 166 (393)
T ss_pred EECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhc-CCeEEEeeccccCCCCCCHHHHHHHHhh------cc
Confidence 99999999999999999999986 999999999999888877 9999999998777899999999988765 78
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC-CccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
++|+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...+........ +.+..+++|+++|||
T Consensus 167 k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vi~i~S~S 243 (393)
T TIGR03538 167 QLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQL---GRDDFRRCLVFHSLS 243 (393)
T ss_pred eEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccc---cccccccEEEEecch
Confidence 9999999999999999999999999999999999999999998776532 223322221110 001347899999999
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
|.|++||+|+||++++++.+ +.+.+... .+.++++.|.++.+.+.+ .+++++.++.++++++.+.+.|+++ +
T Consensus 244 K~~~~~GlRvG~~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~-~ 317 (393)
T TIGR03538 244 KRSNLPGLRSGFVAGDAEIL-KAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQV-L 317 (393)
T ss_pred hhcCCcccceEEEecCHHHH-HHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 99999999999999965544 44443332 234778899988888754 3457888999999999999999876 5
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC------CCCCeEEEEeecCCHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANMSEDTLKLSMQR 423 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~------~~~~~iRi~~~~~~~e~i~~~l~~ 423 (469)
.+..+.+|+|+|++++. ++.+++.++++++||.|.||+.|+. .+.+++||+++. +++++++++++
T Consensus 318 ~~~~p~gg~f~~~~~~~--------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l~~ 388 (393)
T TIGR03538 318 DLELPDAGFYLWPKVPG--------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAAER 388 (393)
T ss_pred cccCCCeeEEEEEECCC--------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHHHH
Confidence 66778999999999971 1236778888888999999998863 235799999985 89999999999
Q ss_pred HHHHH
Q 043923 424 LKAFV 428 (469)
Q Consensus 424 L~~~l 428 (469)
|++++
T Consensus 389 l~~~~ 393 (393)
T TIGR03538 389 IRSFI 393 (393)
T ss_pred HHHhC
Confidence 98753
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=410.78 Aligned_cols=381 Identities=20% Similarity=0.324 Sum_probs=297.3
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
+++|+|+.+.+.+|.+.+..+.+..... .+ .....|++..|.++||++||+++.+++| +++++++|++|
T Consensus 129 p~~i~~~~~~~~fp~~~i~~a~~~l~~~-----~~----~~~~~Y~~s~G~~~lReaIA~~~~~r~g--~~~~pe~I~iT 197 (534)
T PLN02231 129 PSLLDKSETHGLFSADAIERAWQILDQI-----PG----RATGAYSHSQGIKGLRDAIAAGIEARDG--FPADPNDIFLT 197 (534)
T ss_pred CccCCCCCccccCCHHHHHHHHHHHHhc-----CC----ccccCcCCCCCcHHHHHHHHHHHHhccC--CCCCcccEEEe
Confidence 4678888777777877666665432110 00 2356799999999999999999988766 56789999999
Q ss_pred CChHHHHHHHHHHhc-CCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 118 AGATSANETLMFCLA-EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 118 ~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+|+++|+..++++++ .+||.|+++.|+|+.|...+... |.++++++++++++|.+|+++|++++++....+.++++++
T Consensus 198 ~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~-g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv 276 (534)
T PLN02231 198 DGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV 276 (534)
T ss_pred CCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHc-CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 999999999999998 48999999999999999999887 9999999998777899999999999976544445789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC-CCCccchhhhhhccccccCCcCCeEEEEccCcccc-
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL- 274 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~- 274 (469)
++|||||||.++|.+++++|+++|++||++||+||+|.++.|+ +..+.++.++..+++. .....++++++||||.|
T Consensus 277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~--~~~~~~vi~l~S~SK~~~ 354 (534)
T PLN02231 277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGY--GEKDISLVSFQSVSKGYY 354 (534)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhcc--ccCCceEEEEeccCcccc
Confidence 9999999999999999999999999999999999999999885 3455676665331100 00113689999999976
Q ss_pred CCCcceEEEEEec--CHHHHHHHHHhccc-ccCcHHHHHHHHHHhcCc-----hhhHHH---HHHHHHHHHHHHHHHHHH
Q 043923 275 GLPGFRVGAIYSN--DDMVVAAATKMSSF-GLVSSQTQYLLSALLSDK-----KFTQNY---ISENKKRLKQRHRKLVSG 343 (469)
Q Consensus 275 g~~GlRiG~li~~--~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~-----~~~~~~---~~~~~~~l~~~~~~l~~~ 343 (469)
|+||+|+||++++ ++.+.+.+.+.... .+.+.+.|.++..++... .+ ..+ .+..++.++++++.+.+.
T Consensus 355 g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y-~~~~~~~~~i~~~~~~r~~~l~~~ 433 (534)
T PLN02231 355 GECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESY-ESYMAEKDGILSSLARRAKTLEDA 433 (534)
T ss_pred cCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999873 45555555444332 235667888888888642 33 343 345578999999999999
Q ss_pred HHhc-CCceecCCceEEEEEec--ccc-cccC---ChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeecCCHH
Q 043923 344 LEKA-GISCLKSNAGLFCWVDM--RHL-LRSN---TFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSED 415 (469)
Q Consensus 344 L~~~-g~~v~~~~~g~~~~v~~--~~~-~~~~---~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~~~~e 415 (469)
|+++ |+++.+|+||||+|+++ +.. .... ....+..++.++++++||.+.||+.|+.. +..++|+++. .+++
T Consensus 434 L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~-~~~e 512 (534)
T PLN02231 434 LNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTIL-PQED 512 (534)
T ss_pred HhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeC-CCHH
Confidence 9988 89999999999999555 321 0000 00123346788888899999999999863 3557999997 4899
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 043923 416 TLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 416 ~i~~~l~~L~~~l~~~~~~ 434 (469)
++++++++|++++++.-++
T Consensus 513 ~l~eal~RL~~~~~~~~~~ 531 (534)
T PLN02231 513 KIPAIVSRLTEFHKSFMDE 531 (534)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877653
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=402.72 Aligned_cols=350 Identities=21% Similarity=0.340 Sum_probs=283.9
Q ss_pred CCeeeeeccccccCh-H-HHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cE
Q 043923 38 TGIIQMGLAENQLSF-D-LLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i 114 (469)
.++|+|+.+.+..++ + .+....+.... .....|++..|.++||+++|+|++++++ ++++++ +|
T Consensus 35 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~~i 100 (394)
T PRK05942 35 LDLIDLGMGNPDGAAPQPVIEAAIAALAD------------PQNHGYPPFEGTASFRQAITDWYHRRYG--VELDPDSEA 100 (394)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhC------------CCCccCCCCCCCHHHHHHHHHHHHHHHC--CCcCCCCeE
Confidence 468999988655443 3 33333332210 2246799999999999999999988766 446787 48
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||+|++++|+|+.+...+... |++++.+|++.+++|.+|++++++.+++ ++++
T Consensus 101 ~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 173 (394)
T PRK05942 101 LPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIA-GAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKI 173 (394)
T ss_pred EEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCEEEEeecCCccCCccCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999998888776 9999999998767889999999988764 8899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++++|||||||.++|.+++++|+++|++||++||+||+|.++.+++....++.++.. ..+.+++++||||.|
T Consensus 174 i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~SfSK~~ 245 (394)
T PRK05942 174 LYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG--------AKDIGVEFHTLSKTY 245 (394)
T ss_pred EEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC--------ccccEEEEecchhcc
Confidence 999999999999999999999999999999999999999988776544445444421 235678899999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|+||+|+||+++++. +.+.+..... .+++++++|.++..+++.. .+++++.++.++++++.+.+.|++.|+++.
T Consensus 246 ~~~GlRiG~i~~~~~-l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 321 (394)
T PRK05942 246 NMAGWRVGFVVGNRH-IIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRTRRDFLIQGLGELGWNIP 321 (394)
T ss_pred CChhhheeeeecCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCeec
Confidence 999999999999654 4455544432 2347788999999998642 567888899999999999999998899888
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
++++|+|+|++++.... +.+++.++++++||.|.||+.|+..+++|+||+++. +.+.+.+++++|.++
T Consensus 322 ~~~~~~f~~~~~~~~~~------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 322 PTKATMYLWVPCPVGMG------STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQA 389 (394)
T ss_pred CCCeeeEEEEECCCCCC------HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence 89999999999985321 235677788889999999999976567899999984 778888888887664
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-50 Score=406.32 Aligned_cols=352 Identities=20% Similarity=0.289 Sum_probs=280.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.|+++++ ++.+.+++.+...... .......|++..|.++||+++|+++.+.++ +++++++|+
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~ 103 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMG-------TAETFRGYGPEQGYDFLREKIAENDYQARG--CDISADEIF 103 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHHHHHhccc-------ccCCccCCCCCCCCHHHHHHHHHHHHHhcC--CcCChhhEE
Confidence 447899999999985 4555665554311100 002356798889999999999999877766 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCE-----------EEEeeccCCCCcccCHHHHHHHHHH
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVE-----------IVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
+|+|+++++..++ .++.+||+|++++|+|..|...++.. |++ ++++|++.+++|.+|++.
T Consensus 104 it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------- 174 (409)
T PRK07590 104 ISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMA-GRTGEANEDGRYSGIVYLPCTAENNFVPELPE------- 174 (409)
T ss_pred ECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHc-CCcccccccccccceeEeecccccCCcccCcc-------
Confidence 9999999999875 55689999999999999999998887 886 899998766667666432
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
+++++|++||||||||.++|.+++++|+++|++|+++||+||+|.++.+++....++.++.. ..+++
T Consensus 175 -----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~--------~~~~v 241 (409)
T PRK07590 175 -----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEG--------ARECA 241 (409)
T ss_pred -----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCC--------cccce
Confidence 27899999999999999999999999999999999999999999997665543344444311 23579
Q ss_pred EEEccCccccCCCcceEEEEEecCHHHHH-----------HHHH-hc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVA-----------AATK-MS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKK 331 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~~~~~~~-----------~~~~-~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 331 (469)
|+++||||+||+||+|+||++++++.+.. .... .. .+..++.+.|.++..++.+.. .+++++.++
T Consensus 242 i~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~ 319 (409)
T PRK07590 242 IEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKELID 319 (409)
T ss_pred EEEecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHHHHH
Confidence 99999999999999999999997665531 1111 11 233478899999988887542 467888899
Q ss_pred HHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec
Q 043923 332 RLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 411 (469)
Q Consensus 332 ~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~ 411 (469)
.++++++.+.+.|+++|+++.++.+|+|+|++++... ++.+++..+++++||.+.||+.|+..+.+++||++.
T Consensus 320 ~~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~- 392 (409)
T PRK07590 320 YYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGM------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAF- 392 (409)
T ss_pred HHHHHHHHHHHHHHhcCCceecCCcceEEEEECCCCC------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEcc-
Confidence 9999999999999999988888889999999998532 223577888888899999999997666789999975
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043923 412 MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 412 ~~~e~i~~~l~~L~~~l 428 (469)
.+++++++++++|++++
T Consensus 393 ~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 393 GSRENVLEAMERIKKAL 409 (409)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 38999999999998753
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=402.53 Aligned_cols=354 Identities=19% Similarity=0.370 Sum_probs=296.6
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|++.++ ++.+.+++++... .....|.+..|.++||+++|+++++.++ +.+++++|++
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 98 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALD------------EGWTHYTPNAGIPELREAIAEYYKKFYG--VDVDVDNVIV 98 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcccEEE
Confidence 46899999999985 4556666655311 1244688888999999999999987766 4478999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|++++|+|..+...+... |++++.+|++.+++|.+|++++++.+++ ++++++
T Consensus 99 t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~ 171 (391)
T PRK08361 99 TAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIA-EAKPIRIPLREENEFQPDPDELLELITK------RTRMIV 171 (391)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------ccEEEE
Confidence 999999999999999999999999999999999888877 9999999998777888999999998875 788999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++||+||||.++|.+++++|+++|++++++||+||+|.++.+++....++.+. ..+++++++||||+||+
T Consensus 172 i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~----------~~~~~i~~~s~SK~~~~ 241 (391)
T PRK08361 172 INYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKY----------APDNTILANSFSKTFAM 241 (391)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhc----------CCCCEEEEecCchhcCC
Confidence 99999999999999999999999999999999999999887765444454443 33689999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
+|+|+||++++++.+. .+..... .+.++++.|.++..+|.+..+ .+++++.++.++++++.+.+.|+++ ++++.+
T Consensus 242 ~GlRiG~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 319 (391)
T PRK08361 242 TGWRLGFVIAPEQVIK-DMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHIKVFE 319 (391)
T ss_pred cHhhhhhhccCHHHHH-HHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeecC
Confidence 9999999999655444 3333332 345788999999999988655 5678899999999999999999987 888899
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+++|+|+|++++... .+..+++..+++++||.|.||..|+..+++++||+++. +++++++++++|++++++
T Consensus 320 p~g~~~~~~~l~~~~-----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 320 PKGAFYVFANIDETG-----MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKALEE 390 (391)
T ss_pred CCEEEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 999999999997311 12346777787778999999999987667899999995 888999999999998864
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=396.05 Aligned_cols=358 Identities=25% Similarity=0.442 Sum_probs=292.8
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC-CCcEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD-TSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~-~~~i~ 115 (469)
.++|+|+.|.++++ ++.+.+++.+... .....|++..|.++||+++++++++.++ +.++ +++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~ 95 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAID------------ANQSHYTGMAGLLELRQAAADFVKEKYN--LDYAPENEIL 95 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46899999999985 4556666654211 1234698889999999999999988766 3344 47999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++.+++.+++++||+|++++|+|..+...++.. |++++.++.++ .+|.+|++.+++++++. ..+++++
T Consensus 96 it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~~---~~~~~~i 170 (391)
T PRK07309 96 VTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLV-GAEIVEIDTTE-NDFVLTPEMLEKAILEQ---GDKLKAV 170 (391)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc-CCEEEEEecCC-cCCcCCHHHHHHHhhcc---CCCeEEE
Confidence 9999999999999999999999999999999999888877 99999999864 46789999999888631 1268999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+++++|+++|++|++++|+||+|+++.|++..+.++.++ ..+++++++||||+||
T Consensus 171 ~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~----------~~~~~i~~~S~SK~~g 240 (391)
T PRK07309 171 ILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY----------LPDQTILINGLSKSHA 240 (391)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh----------ccCCEEEEecChhhcc
Confidence 999999999999999999999999999999999999999988865544565554 2378999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
+||+|+||++++++.+........ ...+++.+.|.++..++++..+ +....++.++++++++.+.|+++|+++.++
T Consensus 241 ~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 317 (391)
T PRK07309 241 MTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD---DALPMKKEYIKRRDYIIEKMTDLGFKIIKP 317 (391)
T ss_pred CccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh---HHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 999999999997665444332222 2234788899999999987543 235567788899999999999999999999
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+|+|+|++++.... .++.+++.++++++||.|.||..|+..+++++||+++. +++++++++++|+++++++.
T Consensus 318 ~gg~~~~~~l~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 318 DGAFYIFAKIPAGYN----QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred CeeEEEEEECCCCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhhc
Confidence 999999999875321 12346777778788999999999987677899999985 88999999999999997653
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=398.04 Aligned_cols=349 Identities=19% Similarity=0.314 Sum_probs=285.1
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i~ 115 (469)
.++|+|+.|+++++ ++.+.+++.+... .....|++..|.++||+++++++++.+| +.+++ ++|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~ 94 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMR------------DGHNQYAPMAGIAALREALAEKTERLYG--ARYDPASEVT 94 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHH------------hCCCCcCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 36899999999886 4556666654211 1235799999999999999999988776 33444 6899
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++++++++||+|++++|+|..+...+... |.+++.++++. ++|.+|++.+++++++ ++++|
T Consensus 95 it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 166 (384)
T PRK12414 95 VIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQ-GATPVAIKLSP-EDFRVNWDEVAAAITP------RTRMI 166 (384)
T ss_pred EECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHc-CCEEEEEecCc-cccccCHHHHHhhcCc------ccEEE
Confidence 9999999999999999999999999999999998888887 99999999874 4578999999988764 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++....++..+.. ..+++++++||||.||
T Consensus 167 ~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~SfSK~~~ 238 (384)
T PRK12414 167 IVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRE--------LAERSVIVSSFGKSYH 238 (384)
T ss_pred EEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcC--------ccCcEEEEeccccccc
Confidence 99999999999999999999999999999999999999998887644344433311 2468999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+||+|+||++++++.+ +.+.... ..++++.+.|.++..+|.+..+ ..+.++.++++++.+.+.|++.|+++.+
T Consensus 239 ~pGlRiG~~v~~~~l~-~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~~ 313 (384)
T PRK12414 239 VTGWRVGYCLAPAELM-DEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGSRFELLP 313 (384)
T ss_pred CccceEEEEecCHHHH-HHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhCCCeecC
Confidence 9999999999965544 4444443 2345788999999999987643 2356778899999999999999999999
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC--CCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--PGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~--~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
+.+|+|+|++++.... ..+.+++..+++++||.+.||+.|+..+ .+++||+++. +++++++++++|.+
T Consensus 314 ~~gg~~~~~~~~~~~~----~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~ 383 (384)
T PRK12414 314 SEGSFFMLARFRHFSD----ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS 383 (384)
T ss_pred CCcceEEEEcccccCC----CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 9999999998874211 1233567777888999999999886432 5799999996 89999999999975
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=399.19 Aligned_cols=360 Identities=22% Similarity=0.401 Sum_probs=297.0
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.|.+.++ ++.+.+++.+... .....|++..|.++||++++++++++++ +.+++++|+
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~ 97 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIE------------RGETKYTLVNGTPALRKAIIAKLERRNG--LHYADNEIT 97 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 347899999998876 4556666655311 1235799999999999999999988776 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+..++.+++++||+|++++|+|..|...+... |..++.++++.+++|.+|++++++++.+ +++++
T Consensus 98 ~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v 170 (402)
T PRK06107 98 VGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLAN-DGTPVIVACPEEQGFKLTPEALEAAITP------RTRWL 170 (402)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHhhcCc------CceEE
Confidence 9999999999999999999999999999999998887776 8888888887566788999999988754 78899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhc-CeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEK-NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~-~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
+++||+||||.++|.+++++|+++|++| +++||+||+|.++.|++..+.++..+.++ ..+++++++||||.|
T Consensus 171 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~-------~~~~vi~~~S~SK~~ 243 (402)
T PRK06107 171 ILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPE-------LRDRVLVTNGVSKTY 243 (402)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcC-------ccCCEEEEeccchhh
Confidence 9999999999999999999999999998 99999999999887876555666655331 236899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCce
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISC 351 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v 351 (469)
|+||+|+||++++++ +.+.+..... .++++.+.|.++..+|++. .++++..++.++++++.+.+.|+++ |+++
T Consensus 244 ~~pGlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~ 319 (402)
T PRK06107 244 AMTGWRIGYAAGPAD-LIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNAIPGLSC 319 (402)
T ss_pred cCcccceeeeecCHH-HHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999655 4444444432 3458899999999999754 4568888999999999999999987 8888
Q ss_pred ecCCceEEEEEecccccc-----cCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 352 LKSNAGLFCWVDMRHLLR-----SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~-----~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
.++++|+|+|++++.... .....++.+++.++++++||.++||+.|+. ++|+||+++. +++++++++++|++
T Consensus 320 ~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~-~~e~l~~~l~~l~~ 396 (402)
T PRK06107 320 LVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIAT-SLETLEEACARIER 396 (402)
T ss_pred cCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHHHHHH
Confidence 899999999999853211 101123456788888889999999999964 6799999995 89999999999999
Q ss_pred HHHhh
Q 043923 427 FVDSI 431 (469)
Q Consensus 427 ~l~~~ 431 (469)
++++.
T Consensus 397 ~l~~~ 401 (402)
T PRK06107 397 AVAAL 401 (402)
T ss_pred HHHhc
Confidence 98764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=396.19 Aligned_cols=352 Identities=21% Similarity=0.401 Sum_probs=292.8
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|+++++ ++.+.+++.+... .....|++..|.++||+++|+++++.++ +.+++++|++
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~la~~~~~~~~--~~~~~~~i~~ 89 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALA------------DGETFYTHNLGIPELREALARYVSRLHG--VATPPERIAV 89 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCcCcceEEE
Confidence 47899999999986 5667777665311 1224599989999999999999988766 4478999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC-CCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS-LNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
|+|+++++..++.+++++||.|++++|+|..+...+... |++++.+|++. .++|.+|++++++.+++ +++++
T Consensus 90 t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~i 162 (382)
T PRK06108 90 TSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKIL-GARVVCVPLDFGGGGWTLDLDRLLAAITP------RTRAL 162 (382)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHC-CCEEEEeeCCCCCCCccCCHHHHHHhcCc------cceEE
Confidence 999999999999999999999999999999999888877 99999999974 34688999999988764 78899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC-CCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++++||||||.++|.+++++|+++|+++|++||+||+|.++.++ +....++..+.. ..+++++++||||.|
T Consensus 163 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~ 234 (382)
T PRK06108 163 FINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE--------PDDRIIFVNSFSKNW 234 (382)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC--------CcCCEEEEeechhhc
Confidence 99999999999999999999999999999999999999998776 333344444422 336899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCce
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISC 351 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v 351 (469)
|++|+|+||+++++..+ +.+..... ..+++.+.|.++..+|.+. .+++++.+++++++++.+.+.|+++ |+++
T Consensus 235 g~~G~RiG~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 310 (382)
T PRK06108 235 AMTGWRLGWLVAPPALG-QVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRALPGVEV 310 (382)
T ss_pred cCcccceeeeeCCHHHH-HHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999965544 44433322 2346788999999999764 3457888889999999999999887 8888
Q ss_pred ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 352 LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.++++|+|+|++++... +..+++.++++++||.+.||+.|+...++++|++++. +++++++++++|+++++
T Consensus 311 ~~p~~g~~~~~~l~~~~------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 311 AKPDGAMYAFFRIPGVT------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLA 381 (382)
T ss_pred cCCCeeEEEEEeCCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 88999999999997532 2346788888888999999999976567899999997 99999999999999875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=395.48 Aligned_cols=350 Identities=21% Similarity=0.356 Sum_probs=290.1
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|+++++ ++.+.+++.+... .....|++..|.++||+++|+++++.++ +.+++++|++
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~i 97 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALA------------AGHTRYTAARGLPALREAIAGFYAQRYG--VDVDPERILV 97 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCccCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 46899999999975 5666666665311 1234688889999999999999988776 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.+|++.+++|.+|++.+++.+++ ++++++
T Consensus 98 t~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 170 (387)
T PRK08960 98 TPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLV-EGAAQLVPVGPDSRYQLTPALVERHWNA------DTVGAL 170 (387)
T ss_pred ccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc-CCeEEEEecCcccCCCCCHHHHHHHhCc------cceEEE
Confidence 999999999999999999999999999999999888877 9999999998777889999999988765 678899
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++||||||.++|.+++++|+++|++||++||+||+|.++.|+.. ..++.. ..+++++++||||+||+
T Consensus 171 i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~-----------~~~~vi~~~S~SK~~g~ 238 (387)
T PRK08960 171 VASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLE-----------VDDDAFVLNSFSKYFGM 238 (387)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhh-----------ccCCEEEEeecccccCC
Confidence 999999999999999999999999999999999999998777543 234332 23689999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce-ec
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC-LK 353 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v-~~ 353 (469)
+|+|+||++++++ +.+.+..... ..+++.+.|.++.+++.+. . .+++++.++.++++++.+.+.|+++|+.+ ..
T Consensus 239 ~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 315 (387)
T PRK08960 239 TGWRLGWLVAPPA-AVPELEKLAQNLYISASTPAQHAALACFEPE-T-LAILEARRAEFARRRDFLLPALRELGFGIAVE 315 (387)
T ss_pred cccEEEEEEcCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-c-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcC
Confidence 9999999999655 4444444433 2346889999999998753 3 67788899999999999999999988765 46
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
|.+|+|+|++++... .++.+++.++++++||.|.||+.|+.. ..+|+||+++. +.+.+.+++++|+++++
T Consensus 316 p~g~~f~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 316 PQGAFYLYADISAFG-----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIARGLR 386 (387)
T ss_pred CCeeEEEEEeccccC-----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 788999999997521 123467788888889999999999753 35699999996 88999999999998775
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=396.51 Aligned_cols=358 Identities=20% Similarity=0.329 Sum_probs=290.4
Q ss_pred CCeeeeeccccc----c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 38 TGIIQMGLAENQ----L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 38 ~~~i~L~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
.++|+|+.|++. + +++.+.+++.+.... .....|++..|.++||+++|+++++. + ..++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~~~~~-~--~~~~~~ 96 (401)
T TIGR01264 31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDS-----------GKYNGYAPTVGALSAREAIASYYHNP-D--GPIEAD 96 (401)
T ss_pred CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhc-----------cCCCCCCCCCCCHHHHHHHHHHHhhc-C--CCCCHH
Confidence 478999999874 4 455666666553111 12356988899999999999999864 3 347899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|++|+|+++++.+++.+++++||+|++++|+|..|...+... |++++.++++.+++|.+|++.+++++++ ++
T Consensus 97 ~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~ 169 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESM-GIEVKLYNLLPDKSWEIDLKQLESLIDE------KT 169 (401)
T ss_pred HEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHHhcc------Cc
Confidence 9999999999999999999999999999999999999888887 9999999987666788999999988764 67
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+.+ ..++|+++||||
T Consensus 170 ~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---------~~~vi~~~SfSK 240 (401)
T TIGR01264 170 AALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS---------TVPILSCGGLAK 240 (401)
T ss_pred eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC---------CCcEEEEccCcc
Confidence 89999999999999999999999999999999999999999998776655556555522 235899999999
Q ss_pred ccCCCcceEEEEEecCH-----HHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043923 273 DLGLPGFRVGAIYSNDD-----MVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK 346 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~-----~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 346 (469)
+|++||+|+||+++++. .+.+.+.... ..+.++++.|.++..+|.+. . ++++++.++.++++++.+.+.|++
T Consensus 241 ~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~r~~l~~~L~~ 318 (401)
T TIGR01264 241 RWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT-P-QEYFDGTLSVLESNAMLCYGALAA 318 (401)
T ss_pred cCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998742 2223333332 23457889999999999763 2 677889999999999999999998
Q ss_pred c-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 347 A-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 347 ~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
+ |+.+..|.+|+|+|++++...... ..++.+++..+++++||.|.||+.|+. ++++||+++. +++++++++++|.
T Consensus 319 ~~~~~~~~p~~g~f~~~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l~rl~ 394 (401)
T TIGR01264 319 VPGLRPVMPSGAMYMMVGIEMEHFPE-FKNDVEFTERLVAEQSVFCLPGSCFEY--PGFFRVVLTV-PVVMMEEACSRIQ 394 (401)
T ss_pred CCCCcccCCCeeeEEEEEecccccCC-CCCHHHHHHHHHHhCCEEEeCchhcCC--CCeEEEEEcC-CHHHHHHHHHHHH
Confidence 8 788778899999999986420000 012346788888788999999998863 6899999995 7899999999999
Q ss_pred HHHHhh
Q 043923 426 AFVDSI 431 (469)
Q Consensus 426 ~~l~~~ 431 (469)
+++++.
T Consensus 395 ~~~~~~ 400 (401)
T TIGR01264 395 EFCERH 400 (401)
T ss_pred HHHhcc
Confidence 998753
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=389.19 Aligned_cols=341 Identities=21% Similarity=0.340 Sum_probs=281.8
Q ss_pred eeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEEEe
Q 043923 40 IIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIVLT 117 (469)
Q Consensus 40 ~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~~t 117 (469)
+++|+.+.+.++ ++.+.+++++.. .....|+++.|.++||+++++++++++| ++++++ +|++|
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~Iiit 66 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAV-------------PEVSQYPSALGTKALREAISGWFERRFG--VKLDPDAQVLPS 66 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHH-------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEEc
Confidence 689999988876 566777776531 2356799999999999999999988877 457787 99999
Q ss_pred CChHHHHHHHHHHhcCCC---CEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 118 AGATSANETLMFCLAEPG---EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~g---d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+++++..++.+++++| |.|+++.|+|..|...++.. |++++.++++.+++|.+|++++++++++ ++++
T Consensus 67 ~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~ 139 (350)
T TIGR03537 67 AGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFA-GGEPTAVKLKKEDGFLLRLEKVEKSILE------ETKI 139 (350)
T ss_pred CChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHhc-CCEEEEcccCcccCCccCHHHHHHhhhh------ccEE
Confidence 999999999999999887 69999999999999999887 9999999997667888999999998875 7899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
+++++||||||.+++.+++++|+++|++||++||+||+|.++.++. ...++... ..+++++++|+||++
T Consensus 140 i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~----------~~~~~i~~~s~SK~~ 208 (350)
T TIGR03537 140 VWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEV----------GIENVLAFHSLSKRS 208 (350)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhc----------CcCCEEEEeeccccc
Confidence 9999999999999999999999999999999999999999876654 23343333 337899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcccc--cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|++|+|+||+++++. +.+.+......+ ..+.+.|.++.+.+.+.. ++++.++.++++++.+.+.|++.|+++.
T Consensus 209 g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~r~~l~~~~~~~~~~l~~~g~~~~ 283 (350)
T TIGR03537 209 GMTGYRSGFVAGDEK-LISFLRKLRANFGVASPDFVQAAAKAAWSDDN----HVLERRKIFKRKRDLFIEFFNKVGLEYL 283 (350)
T ss_pred CCccccceeeecCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHhCCcH----HHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 999999999998544 444444443222 244467887777776543 4677888999999999999999999988
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
++.+|+|+|++++... +..++++.|+ ++||.|.||..|+...++++||+++ .+++++++++++|++
T Consensus 284 ~~~g~~~~~~~~~~~~------~~~~l~~~L~-~~gv~v~~g~~f~~~~~~~~Ri~~~-~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 284 YPDATFYLWVKVPSGI------DAKDYALRLL-ENGIVVAPGENFGSGEEGYVRVALV-PTLEECEEALRLWER 349 (350)
T ss_pred CCCeEEEEEEECCCCC------CHHHHHHHHH-HCCEEEcCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHhc
Confidence 9999999999998532 2336777776 4699999999997655789999997 589999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=394.45 Aligned_cols=355 Identities=22% Similarity=0.368 Sum_probs=287.2
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
.++|+|+.|.+..+ ++.+.+.+.+.. ......|++..|.++||+++|+++++.++ +.++++ +|+
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 91 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADAL------------LDGSNQYPPMMGLPELRQAVAAHYARFQG--LDLDPETEVM 91 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH------------hcCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 36899999987765 333333333311 01245799999999999999999988776 446788 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |++++.++++. .+|.+|++.+++.+.+ +++++
T Consensus 92 ~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~v 163 (387)
T PRK08912 92 VTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRA-GGVPRLVRLEP-PHWRLPRAALAAAFSP------RTKAV 163 (387)
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCc-ccCcCCHHHHHHHhCc------cceEE
Confidence 9999999999999999999999999999999999988887 99999999864 4578999999988764 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++..+.++.++.. ..+++++++||||.||
T Consensus 164 ~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~g 235 (387)
T PRK08912 164 LLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG--------MRERTVKIGSAGKIFS 235 (387)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCC--------ccCceEEEeechhhcc
Confidence 99999999999999999999999999999999999999988776544445444321 2468999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
++|+|+||++++++.+ +.+...... +++++..|.++..++... .+++++.++.++++++.+.+.|++.|+++.+
T Consensus 236 ~~GlRiG~~~~~~~~~-~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 311 (387)
T PRK08912 236 LTGWKVGFVCAAPPLL-RVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRIGFPVLP 311 (387)
T ss_pred CcCceeEEEecCHHHH-HHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 9999999999965544 444333322 345667788887777532 4457788999999999999999999999999
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+++|+|+|++++..... .++.+++..+++++||.|.||..|+.. ..+|+||+++. +++.+++++++|++++++
T Consensus 312 ~~g~~~l~~~l~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 312 SQGTYFLTVDLAPLGLA---EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAARRR 386 (387)
T ss_pred CCcceEEEecccccCCC---CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 99999999999752100 234467888888889999999998642 35799999996 799999999999998875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=393.37 Aligned_cols=355 Identities=25% Similarity=0.456 Sum_probs=292.5
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
+++|+|+.+.+.++ ++.+.+++.+... .....|++..|.++||+++|+++++.++ +.++++ +|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~~I~ 93 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAIT------------ENYTSYTHNAGLLELRKAACNFVKDKYD--LHYSPESEII 93 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46799999987765 4556666665311 1245798889999999999999987766 456788 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+.+++.+++++||.|++++|+|..|...+... |++++.++.+. .+|.+|.+.+++.+++ +++++
T Consensus 94 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~i 165 (387)
T PRK07683 94 VTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLC-GAKPVFIDTRS-TGFRLTAEALENAITE------KTRCV 165 (387)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHc-CCEEEEeecCc-ccCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888877 99999999874 5788898999888764 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.+++++|+++|+++|++||+||+|+++.+++. ..++.++.. ..+++++++||||+||
T Consensus 166 ~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~--------~~~~vi~~~s~SK~~~ 236 (387)
T PRK07683 166 VLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPE--------MREKTIVINGLSKSHS 236 (387)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccC--------CcCCeEEEeecccccc
Confidence 9999999999999999999999999999999999999999776543 234444421 3468999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+||+|+||+++++..+ +.+.+... ..+++++.|.++..+|.++. .++++.++.++++++.+.+.|.+.++.+.+
T Consensus 237 ~pGlRiG~i~~~~~l~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 312 (387)
T PRK07683 237 MTGWRIGFLFAPSYLA-KHILKVHQYNVTCASSISQYAALEALTAGK---DDAKMMRHQYKKRRDYVYNRLISMGLDVEK 312 (387)
T ss_pred CccceeEEEEcCHHHH-HHHHHHHHhccCCCChHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 9999999999965544 43433322 23467789999999997653 357788889999999999999998999889
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+++|+|+|+.++... .++.+++..+++++||.+.||+.|+..+++++||+++. +++++.+++++|.+++++..|
T Consensus 313 ~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~~~~ 386 (387)
T PRK07683 313 PTGAFYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQKAK 386 (387)
T ss_pred CCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999987421 12335677778889999999999986667899999995 899999999999999876544
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=366.79 Aligned_cols=358 Identities=20% Similarity=0.311 Sum_probs=313.4
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|.|-+.+-.++ ++.+.+++++..+ .+...|+ .+.+++.+++++|++++++. .++++.|+
T Consensus 24 ~~DvlPmWVADMDf~~pp~i~~Al~~rvd------------hGvfGY~--~~~~~~~~ai~~w~~~r~~~--~i~~e~i~ 87 (388)
T COG1168 24 NEDVLPMWVADMDFPTPPEIIEALRERVD------------HGVFGYP--YGSDELYAAIAHWFKQRHQW--EIKPEWIV 87 (388)
T ss_pred CCCcceeeeecccCCCCHHHHHHHHHHHh------------cCCCCCC--CCCHHHHHHHHHHHHHhcCC--CCCcceEE
Confidence 358899999988886 6788888887532 2345676 45588999999999999984 47899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++.|...++..++++|+++||.|++..|.|+++....+.. |.++++.|+. .++.|.+|+++|++++.+. ++++
T Consensus 88 ~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n-~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~-----~vkl 161 (388)
T COG1168 88 FVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLN-GRKVIENPLVEDDGRYEIDFDALEKAFVDE-----RVKL 161 (388)
T ss_pred EcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhc-CcEEEeccccccCCcEEecHHHHHHHHhcC-----CccE
Confidence 9999999999999999999999999999999999999987 9999999986 5678999999999998752 6899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
.++||||||||.+++.+||.+|.++|.+||+.||+||+|+++++.+..+.+..++.+. ..++.+.+.|.||+|
T Consensus 162 ~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~-------~a~~~it~~saSKtF 234 (388)
T COG1168 162 FILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSER-------FADNSITLTSASKTF 234 (388)
T ss_pred EEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChh-------hhcceEEEeeccccc
Confidence 9999999999999999999999999999999999999999999999877887777553 457899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHH-HHh--cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAA-TKM--SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GI 349 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~-~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~ 349 (469)
+++|+++++++.+++.++... +++ .....+|.++..|..++.+.+ ..|+++.++.++.+++++.+.|++. ++
T Consensus 235 NlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G---~~WLd~L~~yl~~N~~~~~~~l~~~~P~v 311 (388)
T COG1168 235 NLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG---EPWLDELLEYLKDNRDYVADFLNKHLPGV 311 (388)
T ss_pred cchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 999999999999888875543 333 234458889999999999887 5689999999999999999999998 89
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
++..|+|.+.+|+++....- ++.++.+.++.+.+|.+.+|..||..+.+++|+++++ +++.+++++++|+.+++
T Consensus 312 ~v~~p~gTYL~WLD~r~l~l-----~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~al~ 385 (388)
T COG1168 312 KVTEPQGTYLAWLDCRELGL-----DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRALK 385 (388)
T ss_pred EEecCCCceeeeeeccccCC-----ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHHHh
Confidence 99999999999999986432 2236788999999999999999999999999999995 99999999999999988
Q ss_pred hhc
Q 043923 430 SIT 432 (469)
Q Consensus 430 ~~~ 432 (469)
.++
T Consensus 386 ~~~ 388 (388)
T COG1168 386 KRR 388 (388)
T ss_pred ccC
Confidence 653
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=391.46 Aligned_cols=342 Identities=18% Similarity=0.267 Sum_probs=273.5
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
++|+|+.|+|+++ ++.+.+++.+.. .....|++..|.++||+++|++++++++ +++++++|++|
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~l~~~~g--~~~~~~~I~it 89 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNA-------------HLLNKYPKSAGEESLREAQRGFFKRRFK--IELKENELIPT 89 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHh-------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEEEe
Confidence 7899999999885 456777766531 2356799999999999999999998877 45789999999
Q ss_pred CChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 118 AGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 118 ~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+++++..++.+++ .+||.|+++.|+|+.|...+... |+++++++++.+++|.+|+...+ +. ++++|
T Consensus 90 ~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~~~--~~-------~~k~v 159 (374)
T PRK05839 90 FGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIAS-RAKVLLMPLTKENDFTPSLNEKE--LQ-------EVDLV 159 (374)
T ss_pred cCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhc-CCEEEEeecccccCCcCCcchhh--hc-------cccEE
Confidence 999999999888764 57999999999999999999877 99999999987778888765432 21 68999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.++. .+.++....... +....+++|+++||||+||
T Consensus 160 ~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~---~~~~~~~vi~~~SfSK~~~ 235 (374)
T PRK05839 160 ILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILV---GNESFKNVLVINSISKRSS 235 (374)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhccc---CccccCcEEEEeccccccC
Confidence 999999999999999999999999999999999999999864432 334443321100 0013479999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+||+|+||+++++ .+.+.+..... .+.++.+.|.++..++.+.. ++++.++.++++++.+.+.| ++. .
T Consensus 236 ~~GlRiG~ii~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l---~~~--~ 305 (374)
T PRK05839 236 APGLRSGFIAGDA-SILKKYKAYRTYLGCASPLPLQKAAAVAWLDDE----HAEFFRNIYAKNLKLAREIL---GIT--I 305 (374)
T ss_pred CccceeEEEecCH-HHHHHHHHHHhhcCCCCChHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHhc---CCC--C
Confidence 9999999999964 45454544432 23477888988887876643 46777888888888887765 444 6
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
|.+|+|+|++++. ..+++.++++++||.|.||+.|+.. .++|+||+++. +++++.+++++|+++++
T Consensus 306 p~gg~fi~~~~~~---------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 306 PPATFYVWLPVDN---------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIKTYLE 373 (374)
T ss_pred CCeeEEEEEeCCC---------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHhh
Confidence 7889999999862 2367788887789999999988753 36899999985 89999999999999875
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=390.89 Aligned_cols=355 Identities=22% Similarity=0.362 Sum_probs=290.2
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC-CCcEEE
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD-TSKIVL 116 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~ 116 (469)
++++|+.|+++++ ++.+.+++++.... .....|++..|.+++|+++++++.+.++ +.++ +++|++
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~~~~~~l~~~~g--~~~~~~~~i~~ 94 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLAN-----------PENHKYQAVQGIPPLLEAITQKLQQDNG--IELNNEQAIVV 94 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEEE
Confidence 6799999999874 56677777653211 1235799899999999999999987766 3345 678999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++.+ .+|.+|++++++++++ ++++|+
T Consensus 95 t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~------~~klv~ 165 (389)
T PRK05957 95 TAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMA-GCQPILVPTD--DNYQLQPEAIEQAITP------KTRAIV 165 (389)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc-CCEEEEeecC--CCCCcCHHHHHHhcCc------CceEEE
Confidence 999999999999999999999999999999998877766 9999999986 4678999999998864 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.++|.+++++|+++|+++|+++|+||+|.++.|++....++..+.. ..+++|+++||||.||+
T Consensus 166 ~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~g~ 237 (389)
T PRK05957 166 TISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPG--------SGNHTISLYSLSKAYGF 237 (389)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCC--------ccCcEEEEecchhhccC
Confidence 9999999999999999999999999999999999999998776543334443322 44789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-C-Ccee
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-G-ISCL 352 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g-~~v~ 352 (469)
+|+|+||++++++ +.+.+...... .+++.+.|.++..+|+++. .++++.++.++++++.+.+.|+++ + +.+.
T Consensus 238 ~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 313 (389)
T PRK05957 238 ASWRIGYMVIPIH-LLEAIKKIQDTILICPPVVSQYAALGALQVGK---SYCQQHLPEIAQVRQILLKSLGQLQDRCTLH 313 (389)
T ss_pred ccceeEEEecCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 9999999999654 44444444332 3467789999999997742 345666777899999999999887 5 3777
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
++++|+|+|++++... ++.++++.+++++||.+.||+.|+...++|+||+++..+++++++++++|.+.++++-
T Consensus 314 ~~~gg~~~~~~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~~ 387 (389)
T PRK05957 314 PANGAFYCFLKVNTDL------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTIV 387 (389)
T ss_pred CCCeeEEEEEeCCCCC------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhhh
Confidence 8899999999987432 2446888888888999999999976556799999986789999999999999988754
Q ss_pred c
Q 043923 433 T 433 (469)
Q Consensus 433 ~ 433 (469)
+
T Consensus 388 ~ 388 (389)
T PRK05957 388 Q 388 (389)
T ss_pred c
Confidence 3
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=383.47 Aligned_cols=330 Identities=25% Similarity=0.395 Sum_probs=282.3
Q ss_pred CeeeeeccccccCh-HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
++++|++||||++| +.+.++++.. ...+.+||++ ...+|+++++++++. +++++|+++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~-------------~~~~~rYPd~-~~~~l~~a~a~~~~~-------~~~~~V~~g 81 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAA-------------LDKLNRYPDP-DYRELRAALAEYYGV-------VDPENVLVG 81 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCC-cHHHHHHHHHHHhCC-------CCcceEEEc
Confidence 68999999999975 6666666553 2357899988 579999999999961 578999999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
+|++++|..++++++.+||+|+++.|+|..|...++.. |++++.+|..+ |.+|++.+..++.+ ++++|++
T Consensus 82 nGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~-g~~~~~v~~~~---~~~d~~~~~~~~~~------~~~lv~i 151 (356)
T COG0079 82 NGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLA-GAEVVKVPLKE---FRLDLDAILAAIRD------KTKLVFL 151 (356)
T ss_pred CChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhc-CCeEEEecccc---cccCHHHHHHhhhc------CCCEEEE
Confidence 99999999999999999999999999999999999988 99999999873 88999999998875 7999999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
||||||||..++.++++++++.+.+ +.+||+||||.+ |.+. +...+.. .++|+++++||||+||++
T Consensus 152 ~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~e--F~~~---~~~~l~~--------~~~nlivlRTfSKa~gLA 217 (356)
T COG0079 152 CNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIE--FSPE---SSLELLK--------YPPNLIVLRTFSKAFGLA 217 (356)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhh--cCCc---hhhhhcc--------CCCCEEEEEecHHhhhcc
Confidence 9999999999999999999999988 999999999998 5542 3333332 347899999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eecCCc
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS-CLKSNA 356 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~-v~~~~~ 356 (469)
|+|+||+++ ++.+.+.+++.+.+|.+|.+++.++.+++.+.+ ++++.++.+...|+++.+.|+++|+. +.++.
T Consensus 218 GlRlGy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~----~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~- 291 (356)
T COG0079 218 GLRVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDAD----YLEESVERIREERERLYAALKALGLFGVFPSQ- 291 (356)
T ss_pred hhceeeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC-
Confidence 999999988 566778888888888899999999999999864 58888999999999999999999865 67766
Q ss_pred eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 357 GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++|++++++.. . ...+.+.|+ ++||.|+.+.. .+..++|+||+++ ++++.++++++|+++++.
T Consensus 292 aNFvlv~~~~~------~-~~~l~~~L~-~~giivR~~~~-~~~~~~~lRitvg--t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 292 ANFVLVRVPDA------E-AAALAEALL-KKGILVRDCSS-VGLLPGYLRITVG--TPEENDRLLAALREVLKG 354 (356)
T ss_pred CcEEEEECCCc------c-HHHHHHHHH-HCCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 58999999851 1 224556665 56999999876 4456789999998 788899999999998865
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=392.47 Aligned_cols=350 Identities=21% Similarity=0.324 Sum_probs=288.8
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
.++|+|+.|.+.++ ++.+.+.+++... .....|++..|.++||+++++++++.++ +..+++ +|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~~a~~l~~~~~--~~~~~~~~i~ 95 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMA------------AGHNQYPPMTGVAALREAIAAKTARLYG--RQYDADSEIT 95 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 36899999988875 4556666655311 1235799889999999999999988776 334554 899
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||+|++++|+|..+...++.. |++++.++++. .+|.+|++++++.+++ +++++
T Consensus 96 ~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~v 167 (386)
T PRK09082 96 VTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELA-GGRAVRVALQP-PDFRVDWQRFAAAISP------RTRLI 167 (386)
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCc-ccccCCHHHHHHhcCc------cceEE
Confidence 9999999999999999999999999999999999988887 99999999974 3688999999988864 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+++++|+++|++|++++|+||+|.++.|++....++.++.. ..+++++++||||.||
T Consensus 168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~S~SK~~~ 239 (386)
T PRK09082 168 ILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPE--------LRERAFVVSSFGKTYH 239 (386)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcC--------ccCcEEEEeechhhcc
Confidence 99999999999999999999999999999999999999998886654556555422 3478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
++|+|+||++++++ +.+.+.+.. ..++++.+.|.++..++... .+++++.++.++++++++.+.|++.++++.+
T Consensus 240 ~~G~RiG~iv~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 315 (386)
T PRK09082 240 VTGWKVGYCVAPAA-LSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANSRFKLLP 315 (386)
T ss_pred chhhhhhhhhCCHH-HHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 99999999999654 444444433 22357889999999998742 4567888899999999999999999999999
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--CCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
+++|+|+|+++++... .+..+++.++++++||.+.||+.|+. .+.+++|++++. +++++++++++|++
T Consensus 316 ~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~ 385 (386)
T PRK09082 316 CEGTYFQLVDYSAISD----LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ 385 (386)
T ss_pred CCeeEEEEEeccccCC----CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 9999999999974211 12346788888899999999998863 345799999996 89999999999975
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=390.25 Aligned_cols=354 Identities=23% Similarity=0.384 Sum_probs=287.6
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.++++++ ++.+.+++.+... .....|++..|.++||+++|+++++.++ +.+++++|+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~ 94 (388)
T PRK07337 29 GRDIIHMGIGEPDFTAPEPVVEAAARALR------------RGVTQYTSALGLAPLREAIAAWYARRFG--LDVAPERIV 94 (388)
T ss_pred CCCEEEeCCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHhEE
Confidence 347899999998874 4556666655311 2245699888999999999999988766 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+..++.+++++||.|++++|+|..+...+... |++++.+|++.+++|.+|++++++.+++ ++++|
T Consensus 95 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v 167 (388)
T PRK07337 95 VTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAA-EGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGV 167 (388)
T ss_pred EecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEeecCCccCCcCCHHHHHhhcCc------cceEE
Confidence 9999999999999999999999999999999998888777 9999999998667789999999988764 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+. ..+...+ .+++++++||||.||
T Consensus 168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~-----------~~~vi~~~S~SK~~~ 235 (388)
T PRK07337 168 LLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL-----------GDDVITINSFSKYFN 235 (388)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc-----------cCCEEEEEechhhcC
Confidence 9999999999999999999999999999999999999998766543 2333222 257899999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce-e
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC-L 352 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v-~ 352 (469)
+||+|+||+++++. +.+.+..... ..+++.+.|.++..++.+..+ .++++.++.++++++.+.+.|+++|+.+ .
T Consensus 236 ~~G~RiG~~~~~~~-l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~ 312 (388)
T PRK07337 236 MTGWRLGWLVVPEA-LVGTFEKLAQNLFICASALAQHAALACFEPDTL--AIYERRRAEFKRRRDFIVPALESLGFKVPV 312 (388)
T ss_pred CchhheeeeecCHH-HHHHHHHHHHHhccCCChHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 99999999999655 4444443332 234788999999999876542 3457788899999999999999988765 4
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
.|++|+|+|++++...... ..++.+++.++++++||.|.||+.|+.. .++|+||+++. +++++++++++|.+++
T Consensus 313 ~p~~g~f~~~~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 313 MPDGAFYVYADCRGVAHPA-AGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF 387 (388)
T ss_pred CCCeeEEEEEecccccCCC-CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence 6789999999997531111 1234467888888899999999999753 46799999996 8999999999998865
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=389.45 Aligned_cols=361 Identities=20% Similarity=0.312 Sum_probs=283.0
Q ss_pred CCCeeeeecccc-c--c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAEN-Q--L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
..++|+|+.|.+ + + +++.+.+.+.+. ......|++..|.++||+++|+++.++.. .+++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~-------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~ 96 (404)
T PRK09265 32 GHKILKLNIGNPAPFGFEAPDEILRDVIRN-------------LPTAQGYSDSKGLFSARKAIMQYYQQKGI--PDVDVD 96 (404)
T ss_pred CCCeEEecCCCCCcCCCCCCHHHHHHHHHH-------------hhcCCCCCCCCCcHHHHHHHHHHHhccCC--CCCCcc
Confidence 347899999744 2 2 234444444432 12245799999999999999999975432 247899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|++|+|+++++..++.+++++||+|++++|+|..+...+... |.+++.++++.+++|.+|++++++++++ ++
T Consensus 97 ~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~ 169 (404)
T PRK09265 97 DIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLS-GGKPVHYLCDEEAGWFPDLDDIRSKITP------RT 169 (404)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHc-CCEEEEEecccccCCCCCHHHHHHhccc------cc
Confidence 9999999999999999999999999999999999999988877 9999999887666788999999988754 78
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|+++||+||||.+++.+++++|+++|+++|++||+||+|.++.|++....++..+.+ ..++++++||||
T Consensus 170 ~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---------~~~vi~~~S~SK 240 (404)
T PRK09265 170 KAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP---------DLLCVTFNGLSK 240 (404)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC---------CceEEEEecchh
Confidence 99999999999999999999999999999999999999999998776654456555422 247899999999
Q ss_pred ccCCCcceEEEEEec-CHH----HHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043923 273 DLGLPGFRVGAIYSN-DDM----VVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK 346 (469)
Q Consensus 273 ~~g~~GlRiG~li~~-~~~----~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 346 (469)
+||+||+|+||++++ +.. +.+.+.... ....++.++|.++.++|.+.+...++++. ++.+.++++.+.+.|++
T Consensus 241 ~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~L~~ 319 (404)
T PRK09265 241 AYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP-GGRLYEQRDRAWELLNA 319 (404)
T ss_pred hccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 999999999999963 222 222222222 12347889999999999765442333332 34567778999999988
Q ss_pred c-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 347 A-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 347 ~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
+ |+++.+|.+|+|+|++++..... ..++.+.+.+++.++||.|.||+.|+...++|+|++++ .+++++++++++|+
T Consensus 320 ~~~~~~~~p~~g~~l~~~~~~~~~~--~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~-~~~e~l~~~l~rl~ 396 (404)
T PRK09265 320 IPGVSCVKPKGALYAFPKLDPKVYP--IHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL-PRVDDLEEAIGRIG 396 (404)
T ss_pred CCCCcccCCCcceEEEEEecccccC--CCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC-CCHHHHHHHHHHHH
Confidence 7 88888999999999999753210 01233456677788899999999997656789999997 58999999999999
Q ss_pred HHHHhhc
Q 043923 426 AFVDSIT 432 (469)
Q Consensus 426 ~~l~~~~ 432 (469)
++++...
T Consensus 397 ~~l~~~~ 403 (404)
T PRK09265 397 RFLSGYR 403 (404)
T ss_pred HHHHHhc
Confidence 9997554
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=397.08 Aligned_cols=340 Identities=19% Similarity=0.262 Sum_probs=278.9
Q ss_pred CCeeeeeccccccCh-HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
..+++|+.+.+..++ +.+.+++.+.. .....|++..|.++||+++++++++..+ .+++|++
T Consensus 85 ~~~i~L~~g~p~~~~~p~~~~~~~~~~-------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-----~~~~Iii 146 (431)
T PRK15481 85 TPLHDLAGGNPDPQRLPDLSRYFARLS-------------RTPRLYGDAPVSPELHAWAARWLRDDCP-----VAFEIDL 146 (431)
T ss_pred chhhhhhcCCCChhHhHHHHHHHHHhh-------------hhhhhcCCcCCCHHHHHHHHHHHhhccC-----CcCeEEE
Confidence 357999998666543 55556555421 2245799999999999999999975422 3579999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|++++|..+++++++|||.|++++|+|..|...++.. |++++.+|++++ .+|++.+++++++ ++++++
T Consensus 147 t~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~---g~~~~~l~~~~~~------~~k~i~ 216 (431)
T PRK15481 147 TSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYA-GFSASPVSVDAE---GMQPEKLERALAQ------GARAVI 216 (431)
T ss_pred ecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCeEEeeccCCC---CCCHHHHHHHHhc------CCCEEE
Confidence 999999999999999999999999999999999999987 999999999743 3788999988864 678888
Q ss_pred Ee-cCCCCCCCCCCHHHHHHHHHHHHhc-CeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 197 VT-NPSNPLGTTMSRNELNLLVNIITEK-NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 197 l~-~P~NPtG~~~s~e~l~~l~~~~~~~-~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++ |||||||.++|.+++++|+++|+++ +++||+||+|.++.++.. .+.... ..+++++++||||+|
T Consensus 217 ~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~~----------~~~~vi~~~SfSK~~ 284 (431)
T PRK15481 217 LTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--HSVIPQ----------TTQRWALIRSVSKAL 284 (431)
T ss_pred ECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--CCCCcC----------CCCCEEEEeeecccc
Confidence 86 9999999999999999999999999 999999999998765432 222211 236899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
| ||+|+||+++++.. .+.+...... .+++.+.|.++..+|.++.+ .+++++.++.++++++.+.+.|++.++++.
T Consensus 285 ~-~GlRiG~~i~~~~~-~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~ 361 (431)
T PRK15481 285 G-PDLRLAFVASDSAT-SARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGIAIP 361 (431)
T ss_pred C-CCceeEEEeCCHHH-HHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9 99999999996554 4444333222 34789999999999999877 788999999999999999999999998887
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.|.+|+|+|++++.. ..+++..++ ++||.|.||+.|+.. ..+++||+++..+++++++++++|++++.
T Consensus 362 ~p~gg~f~~~~l~~~--------~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 362 SPGDGLNLWLPLDTD--------SQATALTLA-KSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred cCCCeEEEEEECCCC--------HHHHHHHHH-HCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 889999999999731 235666665 679999999999643 24689999997789999999999999875
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=387.12 Aligned_cols=360 Identities=23% Similarity=0.372 Sum_probs=291.4
Q ss_pred CCCeeeeeccccc----c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 37 PTGIIQMGLAENQ----L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 37 ~~~~i~L~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
..++|+|+.+.+. + +++.+.+++.+.... .....|++..|.+++|+++|++++...+ +.+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 96 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRS-----------GKFNGYAPSVGALAAREAVAEYLSSDLP--GKLTA 96 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCH
Confidence 3578999999864 2 345566666553111 1234798889999999999999987554 44678
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
++|++|+|+++|+.+++.+++.+||+|+++.|+|..+...+... |++++.++++.+++|.+|++.+++.+.+ +
T Consensus 97 ~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~ 169 (403)
T TIGR01265 97 DDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFS-GLEVRLYDLLPEKDWEIDLDGLEALADE------K 169 (403)
T ss_pred HHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEecCCcccCCccCHHHHHHHhCc------C
Confidence 99999999999999999999999999999999999998888777 9999999987666788999999988754 7
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++.++.+ ..++|+++|||
T Consensus 170 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---------~~~vi~~~S~S 240 (403)
T TIGR01265 170 TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFAS---------IVPVLSLGGIS 240 (403)
T ss_pred ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhcc---------CCcEEEEeecc
Confidence 889999999999999999999999999999999999999999998877655556555522 25799999999
Q ss_pred cccCCCcceEEEEEecC--HH----HHHHHHHhcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043923 272 KDLGLPGFRVGAIYSND--DM----VVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGL 344 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~--~~----~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 344 (469)
|+|++||+|+||+++++ .. +.+.+..... ...++.+.|.++..+|.+.. ..++++.+++++++++.+.+.|
T Consensus 241 K~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L 318 (403)
T TIGR01265 241 KRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYEEL 318 (403)
T ss_pred cccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 22 2222333332 34578899999999997632 5678889999999999999999
Q ss_pred Hhc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHH
Q 043923 345 EKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 423 (469)
Q Consensus 345 ~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~ 423 (469)
+.+ |+.+..|.+|+|+|++++..... ...+..+++..+++++||.|.||+.|+ .++|+||+++. +++.+++++++
T Consensus 319 ~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~--~~~~iRis~~~-~~~~l~~~l~~ 394 (403)
T TIGR01265 319 KDIPGLVCPKPEGAMYLMVKLELELFP-EIKDDVDFCEKLVREESVICLPGSAFG--LPNWVRITITV-PESMLEEACSR 394 (403)
T ss_pred hcCCCceecCCCceeEEEEeccccccC-CCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEecC-CHHHHHHHHHH
Confidence 987 78877888999999999753211 011345678888888899999999996 37899999995 78999999999
Q ss_pred HHHHHHhh
Q 043923 424 LKAFVDSI 431 (469)
Q Consensus 424 L~~~l~~~ 431 (469)
|+++++++
T Consensus 395 l~~~~~~~ 402 (403)
T TIGR01265 395 IKEFCERH 402 (403)
T ss_pred HHHHHHhc
Confidence 99998654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=385.56 Aligned_cols=358 Identities=19% Similarity=0.294 Sum_probs=285.9
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i 114 (469)
..++|+|+.+.+... ++.+.+.+.+.... .....|+++.|.++||++++++++++++ +.++++ +|
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~i 94 (395)
T PRK08175 28 GEDIIDFSMGNPDGPTPPHIVEKLCEVAQR-----------PDTHGYSTSRGIPRLRRAISRWYQDRYD--VDIDPESEA 94 (395)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 457899999866553 33333333332110 2346799999999999999999998776 446776 89
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++..++++||+|++++|+|+.+...+... |++++.++++.+++ ++++++++++.. .+++++
T Consensus 95 ~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~---~~~~l~~~l~~~---~~~~~~ 167 (395)
T PRK08175 95 IVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIA-GAQVRSVPLVEGVD---FFNELERAIRES---YPKPKM 167 (395)
T ss_pred EEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCeEEEEecccCCC---cHHHHHHHHhhc---cCCceE
Confidence 99999999999999999999999999999999998888777 99999999876543 367777776531 237899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
+++++||||||.+++.+++++|+++|++||++||+||+|.++.+++....++..+.. ..+++++++||||.|
T Consensus 168 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~ 239 (395)
T PRK08175 168 MILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG--------AKDVAVEFFTLSKSY 239 (395)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC--------cccCEEEEeeccccc
Confidence 999999999999999999999999999999999999999998776544445444311 236788999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|+||+|+||++++++ +.+.+.+... .++++++.|.++..++... .+++++.++.++++++++.+.|+++|+.+.
T Consensus 240 g~pGlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 315 (395)
T PRK08175 240 NMAGWRIGFMVGNPE-LVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRDVLVKGLHEAGWMVE 315 (395)
T ss_pred cCcchhheeeeCCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 999999999998554 5445544443 2346677888888888653 567888899999999999999999999888
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++.+|+|+|++++..... .++.+++.++++++||.|.||..|+..+++++||+++ .+++.+++++++|++++++
T Consensus 316 ~p~~g~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~-~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 316 MPKASMYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI-ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred CCCEEEEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-CCHHHHHHHHHHHHHHHHh
Confidence 888999999999864321 1234677888888899999999997666789999998 4899999999999999864
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=385.51 Aligned_cols=344 Identities=22% Similarity=0.287 Sum_probs=284.6
Q ss_pred CCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 36 NPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
...++++|+++++..+ ++.+ ++..+... .....|++..|.++||++||++++ .+++++|
T Consensus 24 ~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~-------~~~~~~v 83 (373)
T PRK07324 24 AESCIDSLTLEELLALAGKNP-EAFYQELG------------QKKLTYGWIEGSPEFKEAVASLYQ-------NVKPENI 83 (373)
T ss_pred ccCCCCCCcHHHHHhccCcch-HHHHHHHh------------cCCccCCCCCCCHHHHHHHHHHhc-------CCChhhE
Confidence 4567999999998775 3344 33332111 123479999999999999999985 1578999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++|+.+++.+++++||+|+++.|+|..+...++.. |++++.+|++.+++|.+|++++++.+++ ++++
T Consensus 84 i~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~~~------~~kl 156 (373)
T PRK07324 84 LQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPESL-GAEVDYWQLKEENGWLPDLDELRRLVRP------NTKL 156 (373)
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHhCCC------CCcE
Confidence 99999999999999999999999999999999999888877 9999999998777888999999887754 7899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++||||||.+++.+++++|+++|++||++||+||+|.++.+++. ..++.+. .+++|+++||||+|
T Consensus 157 i~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~-----------~~~~I~~~s~SK~~ 224 (373)
T PRK07324 157 ICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL-----------YEKGISTNSMSKTY 224 (373)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc-----------cCCEEEEecchhhc
Confidence 99999999999999999999999999999999999999998766542 3343332 35789999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCce
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISC 351 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v 351 (469)
|++|+|+||++++ +.+.+.+.+...+ .+++.++|.++..+|... +.++++.++.++++++.+.+.|++. ++.+
T Consensus 225 ~~~G~RiG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 300 (373)
T PRK07324 225 SLPGIRVGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKEPRVSY 300 (373)
T ss_pred CCccceeEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 9999999999995 5555555555433 346778899888888753 5678888899999999999999887 7788
Q ss_pred ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 352 LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
..|++|+|+|+.++.. .+..+++.++++++||.|.||+.|+. ++++||+++. +++.+++++++|++++++.
T Consensus 301 ~~p~gg~~~~i~~~~~------~~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 301 VKPKAVSTSFVKLDVD------MPSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGLKKLSEFLREF 371 (373)
T ss_pred ECCCceEEEEEEeCCC------CCHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 8899999988888642 12446888888889999999999964 6799999985 8999999999999999753
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=385.53 Aligned_cols=353 Identities=24% Similarity=0.449 Sum_probs=289.2
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|.++++ ++.+.+++.+.. .....|++..|.++||++++++++. ++ +++++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~g~~~lr~~ia~~~~~-~~--~~~~~~~i~~ 93 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYD-------------EEVLAYSHSQGIPELREAFAKYYKK-WG--IDVEPDEILI 93 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHh-------------cCCcCcCCCCCCHHHHHHHHHHHHH-hC--CCCCcceEEE
Confidence 46899999999874 556666665531 2345799999999999999999983 44 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCccc-CHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQI-TETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~-d~~~l~~~i~~~~~~~~~~~~v 195 (469)
|+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++++.+.+|.+ +++.+++++++ ++++|
T Consensus 94 t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~g~~~~~~~~l~~~~~~------~~~~v 166 (397)
T PRK07568 94 TNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSA-GVKIVPVTTKIEEGFHLPSKEEIEKLITP------KTKAI 166 (397)
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHc-CCEEEEeecCcccCCCCCCHHHHHHhcCc------cceEE
Confidence 999999999999999999999999999999998887777 99999999875556664 57888888764 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++||+||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++.++.. ..+++++++||||.||
T Consensus 167 ~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~S~SK~~~ 238 (397)
T PRK07568 167 LISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEG--------LEDRVIIIDSVSKRYS 238 (397)
T ss_pred EEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCC--------CcCCEEEEecchhhcc
Confidence 99999999999999999999999999999999999999998776654456555422 3478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
++|+|+||++++++.+.+.+.+.. ..++++.+.|.++..+++.. +.++++.++.++++++.+.+.|+++ ++.+..
T Consensus 239 ~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 315 (397)
T PRK07568 239 ACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIPGVVCEK 315 (397)
T ss_pred CCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCCCceecC
Confidence 999999999997655555443322 23457889999999999764 4568888999999999999999987 788888
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHh-----CCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYD-----VKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~-----~GI~v~pg~~f~~~---~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
|.+|+|+|++++.. +..+++..++++ +||.+.||..|+.. +++++||+++. +++++++++++|+
T Consensus 316 p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~~l~ 387 (397)
T PRK07568 316 PKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAMEILK 387 (397)
T ss_pred CCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHHHHH
Confidence 99999999999742 233567777754 69999999988532 35799999984 7899999999999
Q ss_pred HHHHhhc
Q 043923 426 AFVDSIT 432 (469)
Q Consensus 426 ~~l~~~~ 432 (469)
+++++..
T Consensus 388 ~~l~~~~ 394 (397)
T PRK07568 388 EALEKYN 394 (397)
T ss_pred HHHHHhh
Confidence 9997644
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=386.88 Aligned_cols=355 Identities=23% Similarity=0.341 Sum_probs=286.7
Q ss_pred CCCeeeeecccc---cc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAEN---QL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
+.++|+|+.|.+ .+ +++.+.+++.+... .....|++..|.++||+++|+++++.++ +.++++
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~ 94 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIK------------EGHNYYGPSEGLPELREAIVKREKRKNG--VDITPD 94 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCChh
Confidence 457899999998 44 45666666654211 1134698888999999999999988766 457899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEe-eccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPI-QCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v-~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
+|++|+|+++|+..++.+++++||.|++++|+|..+...+... |.+++.+ +.+ +.+|.+|++.+++++++ +
T Consensus 95 ~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~v~~~~~~-~~~~~~d~~~l~~~~~~------~ 166 (398)
T PRK08363 95 DVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFY-GGVPVEYRTIE-EEGWQPDIDDIRKKITE------K 166 (398)
T ss_pred hEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCEEEEecccc-ccCCcCCHHHHHhhCCc------c
Confidence 9999999999999999999999999999999999999888877 9998888 444 35688999999888754 7
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
+++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. +.++..+. ...++++++|||
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~---------~~~~vi~~~SfS 236 (398)
T PRK08363 167 TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLT---------KDVPVIVMNGLS 236 (398)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcC---------cCCcEEEEecch
Confidence 89999999999999999999999999999999999999999998777543 23444442 235799999999
Q ss_pred cccCCCcceEEEEEe--cCHHHHHHHHHhc----ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 272 KDLGLPGFRVGAIYS--NDDMVVAAATKMS----SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 272 K~~g~~GlRiG~li~--~~~~~~~~~~~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
|+|++||+|+||+++ ++..+........ ..+.++.+.|.++.++|.+. .+++++.++.++++++.+.+.|+
T Consensus 237 K~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~~L~ 313 (398)
T PRK08363 237 KVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKRLN 313 (398)
T ss_pred hccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999997 4433322222211 12457889999999998752 55688888999999999999998
Q ss_pred hc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 043923 346 KA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424 (469)
Q Consensus 346 ~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L 424 (469)
++ ++++.++.+|+|+|++++.... .++.+++..+++++||.|+||+.|+..+++|+||+++ .+++++++++++|
T Consensus 314 ~~~~~~~~~p~g~~~~~~~l~~~~~----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~~~~~l~~~l~~l 388 (398)
T PRK08363 314 EIPGISTTKPQGAFYIFPRIEEGPW----KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL-PPVEILEEAMDRF 388 (398)
T ss_pred cCCCCEecCCCeEEEEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHHHH
Confidence 87 7888889999999998875210 1233566777788999999999997656789999998 4889999999999
Q ss_pred HHHHHhh
Q 043923 425 KAFVDSI 431 (469)
Q Consensus 425 ~~~l~~~ 431 (469)
++++.+.
T Consensus 389 ~~~~~~~ 395 (398)
T PRK08363 389 EEFMRER 395 (398)
T ss_pred HHHHHHh
Confidence 9988763
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=390.01 Aligned_cols=350 Identities=20% Similarity=0.273 Sum_probs=273.5
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.|+++++ ++.+.+++.+..... . .......|++..|.++||+++|+++.+. .+++++|+
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~-~------~~~~~~~Y~p~~g~~~lr~aia~~~~~~-----~~~~d~I~ 99 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDEL-A------SEETFRGYGPEQGYPFLREAIAENDYRG-----RIDPEEIF 99 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcc-c------ccccccCCCCCCCCHHHHHHHHHHHHhc-----CCCHHHEE
Confidence 457899999999875 455566555421100 0 0012356988889999999999986321 26899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCC-----------EEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGV-----------EIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
+|+|+++++..++ .++.+||.|++++|+|..|...++.. |+ ++++++++.+++|.+|+...
T Consensus 100 it~Ga~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------ 171 (402)
T TIGR03542 100 ISDGAKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVMA-GRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE------ 171 (402)
T ss_pred ECCCcHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHc-CCccccccccccceEEEeecchhhCCCCCcccc------
Confidence 9999999999875 55689999999999999999988877 99 99999987656676664221
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
.++++|+++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++....++..+.. ..+++
T Consensus 172 -----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~v 238 (402)
T TIGR03542 172 -----PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPG--------AKECA 238 (402)
T ss_pred -----CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCC--------CcccE
Confidence 27899999999999999999999999999999999999999999997665432233333311 23679
Q ss_pred EEEccCccccCCCcceEEEEEecCHHH-------HHHHH-Hh-cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSNDDMV-------VAAAT-KM-SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~~~~~-------~~~~~-~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 335 (469)
|+++||||.||+||+|+||+++++..+ ..... .. ...++++.+.|.++..++.+..+ .+..+.++.+++
T Consensus 239 i~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~ 316 (402)
T TIGR03542 239 IEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISYYME 316 (402)
T ss_pred EEEecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHHHHH
Confidence 999999999999999999999976544 12221 12 23335788999999999887553 345667788899
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHH
Q 043923 336 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 415 (469)
Q Consensus 336 ~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e 415 (469)
+++.+.+.|++.|+++.++.+|+|+|++++... ++.+++..+++++||.++||+.|+..+++|+||+++. +++
T Consensus 317 ~~~~~~~~L~~~~~~~~~~~~~~f~~v~l~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~ 389 (402)
T TIGR03542 317 NARILRKALEAAGFKVYGGEHAPYLWVKTPEGI------SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRE 389 (402)
T ss_pred HHHHHHHHHHhcCceecCCCceeEEEEECCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHH
Confidence 999999999998888888888999999998532 2336888888888999999999976567899999875 899
Q ss_pred HHHHHHHHHHHHH
Q 043923 416 TLKLSMQRLKAFV 428 (469)
Q Consensus 416 ~i~~~l~~L~~~l 428 (469)
++++++++|++++
T Consensus 390 ~l~~~l~~l~~~~ 402 (402)
T TIGR03542 390 NIVEACERIKEAL 402 (402)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998763
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=384.59 Aligned_cols=358 Identities=25% Similarity=0.481 Sum_probs=295.0
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
..+|+|+.+.+.++ ++.+.+++.+... .....|++..|..+||+++|+++++.++ ..+++++|++
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~~ 96 (393)
T PRK05764 31 RDVISLGAGEPDFDTPEHIKEAAIEALD------------DGKTKYTPAAGIPELREAIAAKLKRDNG--LDYDPSQVIV 96 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCCcCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 46899999999886 4556666655311 1234699889999999999999988776 3467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++.+.+++|.+|++.+++.+++ ++++++
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 169 (393)
T PRK05764 97 TTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLA-GGVPVFVPTGEENGFKLTVEQLEAAITP------KTKALI 169 (393)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHc-CCEEEEEecCcccCCcCCHHHHHHhhCc------cceEEE
Confidence 999999999999999999999999999999998888877 9999999998667889999999988754 788999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++|+||||.++|.+++++|+++|++||+++|+||+|.++.|++..+.++.++..+ ..+++++++||||.+|+
T Consensus 170 ~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~s~SK~~~~ 242 (393)
T PRK05764 170 LNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPE-------LRDRTITVNGFSKAYAM 242 (393)
T ss_pred EECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCC-------CcCCEEEEecCcccccC
Confidence 99999999999999999999999999999999999999887765444455544221 34689999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
+|+|+||++++++ +.+.+..... .+.++++.|.++..++.. . .+++++.++.++++++.+.+.|+++ |+++.+
T Consensus 243 ~G~RiG~i~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 318 (393)
T PRK05764 243 TGWRLGYAAGPKE-LIKAMSKLQSHSTSNPTSIAQYAAVAALNG--P-QDEVEEMRQAFEERRDLMVDGLNEIPGLECPK 318 (393)
T ss_pred ccceeEEEecCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHcC--C-hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Confidence 9999999998654 4444433332 345788999999999873 2 4667888889999999999999998 899888
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+++|+|+|++++....... ..+.+++..+++++||.+.||..|+. ++++||+++. +++++++++++|.+++++.
T Consensus 319 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 319 PEGAFYVFPNVSKLLGKSI-TDSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIERFLESL 392 (393)
T ss_pred CCcceEEEEeccccccccc-CCHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999999986432111 12346788888888999999998864 7899999985 8999999999999998754
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=383.60 Aligned_cols=353 Identities=20% Similarity=0.291 Sum_probs=286.1
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.+.|+|+.++++.+ ++.+.+.+.+.... .....|++..|.++||+++|+++++.++ ..+++++|+
T Consensus 28 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~ 94 (386)
T PRK07550 28 DGPLIDLSQAVPGYPPPPELLRALAEAAAD-----------PAAHLYGPVEGLPELREAYAAHYSRLYG--AAISPEQVH 94 (386)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------cCCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEE
Confidence 446899999998875 45566665542110 2345798888999999999999998877 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |++++.+++++++++.+|++++++++++ ++++|
T Consensus 95 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v 167 (386)
T PRK07550 95 ITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDML-GIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAI 167 (386)
T ss_pred EecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEecCCCcCCCCCHHHHHHHhcc------cCcEE
Confidence 9999999999999999999999999999999998888877 9999999998666788999999998875 78899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++||||||.++|.+++++|+++|++||++||+||+|+++.++.....++..... ..+++++++||||.||
T Consensus 168 ~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~g 239 (386)
T PRK07550 168 ALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPD--------WDDTLVHLYSFSKSYA 239 (386)
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCC--------ccccEEEEecchhhcc
Confidence 99999999999999999999999999999999999999986544322222222111 2368999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
++|+|+||+++++..+.+....... ..+++.+.|.++..++.+ + .+++++.++.++++++.+.+.|.++ ++.+ .
T Consensus 240 ~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~ 315 (386)
T PRK07550 240 LTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN--L-ADWRAGNRAEIARRRDAFRAVFARLPGWEL-L 315 (386)
T ss_pred CcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHHHHHHHHHhCCCcee-C
Confidence 9999999999965544333332222 234678899999999875 2 6778888899999999999999986 6654 4
Q ss_pred CCceEEEEEeccc-ccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRH-LLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 354 ~~~g~~~~v~~~~-~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+.+|+|+|++++. .. +..+++.++++++||.|.||..|+...++++||+++..+++++++++++|+++
T Consensus 316 ~~g~~~~~~~~~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 316 ASGAYFAYVRHPFPDR------PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred CCceEEEEecCCCCCC------CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 5688999999874 22 23467888888899999999999765578999999977899999999999876
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=387.20 Aligned_cols=358 Identities=23% Similarity=0.375 Sum_probs=293.7
Q ss_pred CCeeeeecccccc---ChHHHHHHHhcCCCccccccCCcccccc-cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAENQL---SFDLLESWLDRNPDAAGFKRDGQSIFRE-LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
+.+|+|+.+.+.. |.....+.+....... -.. ...|.+..|.++||++|++++....| +.+++++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~---------~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g--~~~~~~~ 157 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNY---------GASLALQYGPTAGLPELREAIAAYLLARRG--ISCEPEQ 157 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhc---------chhhhhcCCCCCCcHHHHHHHHHHHHHhcC--CccCcCe
Confidence 6789999886443 3334444443321100 012 45688889999999999999986655 6688999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++|+|+++|+.++.+.+++|||+|++++|+|.....+++.. |+++++||+|.++ +|+++++..+... ++|
T Consensus 158 IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~-g~~~~~vp~d~~G---~~~e~le~~~~~~-----~~k 228 (459)
T COG1167 158 IVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEAL-GARVIPVPVDEDG---IDPEALEEALAQW-----KPK 228 (459)
T ss_pred EEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHc-CCcEEecCCCCCC---CCHHHHHHHHhhc-----CCc
Confidence 999999999999999999999999999999999999999988 9999999998654 8999999998764 788
Q ss_pred EEEEe-cCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 194 GVLVT-NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 194 ~vvl~-~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
+++++ +.+||||.+||.+..++|+++|++||++||+||.|+++.|++.+..++..+ +..++||+++||||
T Consensus 229 ~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~l---------d~~~rViy~gSFSK 299 (459)
T COG1167 229 AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKAL---------DAPGRVIYLGSFSK 299 (459)
T ss_pred EEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhh---------CCCCCEEEEeeehh
Confidence 76544 338999999999999999999999999999999999998887765666665 24589999999999
Q ss_pred ccCCCcceEEEEEecCHHHHHHHHH-hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---C
Q 043923 273 DLGLPGFRVGAIYSNDDMVVAAATK-MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA---G 348 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~~~~~~~~~-~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---g 348 (469)
+++ ||+|+||+++|+..+...... ......++.+.|.+++..+.++.+ .+++++.++.|+++++.+.+.|.++ .
T Consensus 300 ~l~-PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~~~~ 377 (459)
T COG1167 300 TLA-PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLPEL 377 (459)
T ss_pred hcc-cccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 996 999999999976655444332 222345889999999999997666 9999999999999999999999998 3
Q ss_pred CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC-CCCCCCCC--CCeEEEEeecCCHHHHHHHHHHHH
Q 043923 349 ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP-GSSCHCTE--PGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 349 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p-g~~f~~~~--~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
+++..|.+|+|+|++++...+ +.++.+.++ ++||.+.| |..|.... .+++|++++..+++++++++++|.
T Consensus 378 ~~~~~p~gG~flwl~l~~~~~------~~~l~~~a~-~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~ 450 (459)
T COG1167 378 ATWTRPEGGLFLWLELPEGID------ARELLAAAL-EKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLA 450 (459)
T ss_pred eeeecCCceEEEEEEcCCCCC------HHHHHHHHH-HCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 678899999999999997643 335666665 56999999 88887654 458999999889999999999999
Q ss_pred HHHHhhcc
Q 043923 426 AFVDSITT 433 (469)
Q Consensus 426 ~~l~~~~~ 433 (469)
+++++...
T Consensus 451 ~~~~~~~~ 458 (459)
T COG1167 451 ALLREAAA 458 (459)
T ss_pred HHHHHHhc
Confidence 99987643
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=384.67 Aligned_cols=333 Identities=17% Similarity=0.256 Sum_probs=270.6
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|+|+++ ++.+.+++.+.. .....|| ..|.++||+++|++++ +++++|++
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~-------------~~~~~Yp-~~g~~~Lr~aia~~~~--------~~~~~I~v 86 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSW-------------LDHALYP-DGGATTLRQTIANKLH--------VKMEQVLC 86 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHH-------------HhcCcCC-CCCHHHHHHHHHHHhC--------CCcceEEE
Confidence 47899999999995 566777766531 2234576 4588999999999985 68999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|++++|+|+.|...+... |++++.+|++ ++.+|++++++++++ ++++++
T Consensus 87 t~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~v~~v~~~---~~~~d~~~l~~~~~~------~~~~v~ 156 (366)
T PRK01533 87 GSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIE-GCEVKEVALN---NGVYDLDEISSVVDN------DTKIVW 156 (366)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHc-CCEEEEeecC---CCCcCHHHHHHHhCc------CCcEEE
Confidence 999999999999999999999999999999999999887 9999999985 335899999988764 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+||||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+. ..+...... ..+++|+++||||+||+
T Consensus 157 i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~-~~~~~~~~~--------~~~~vi~~~SfSK~~~l 226 (366)
T PRK01533 157 ICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD-FPETLPLLE--------KHKNILVLRTFSKAYGL 226 (366)
T ss_pred EeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc-CcchhHHhc--------cCCCEEEEeCchHHhcC
Confidence 9999999999999999999999998877 5677999998655432 223333332 44789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 356 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~ 356 (469)
||+|+||++++ +.+.+.+.+....++++.++|.++.++|++.++ .++.++.++++++.+.+.++.+|+++.++++
T Consensus 227 ~GlRiG~~i~~-~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~r~~~~~~l~~~g~~~~~~~~ 301 (366)
T PRK01533 227 ASFRVGYAVGH-EELIEKLNVVRLPFNVSSLAQKAATIAFGDDEF----IEEIVRVNTEGLRQYESFCKENEIPFYQSQT 301 (366)
T ss_pred hHHHHhHHhCC-HHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHhCCCccCCCcC
Confidence 99999999996 445555555555667899999999999987554 5666777788888888899888999888865
Q ss_pred eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhccccc
Q 043923 357 GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTLH 436 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~~~~ 436 (469)
+|+|++++. ..++.+.++ ++||.|++ | ++++||+++ +++++++++++|+++++..+.++.
T Consensus 302 -nf~~~~~~~---------~~~~~~~l~-~~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~al~~~~~~~~~~~~ 361 (366)
T PRK01533 302 -NFIFLPVEN---------GGEIYEACA-HAGFIIRP---F----PNGVRITVG--TREQNEGVISVLQQHFENKKRKSR 361 (366)
T ss_pred -cEEEEeCCC---------HHHHHHHHH-HCCcEEcc---C----CCceEEeCC--CHHHHHHHHHHHHHHHHhcccccc
Confidence 799999862 124555555 67999997 3 468999998 799999999999999877666544
Q ss_pred c
Q 043923 437 N 437 (469)
Q Consensus 437 ~ 437 (469)
.
T Consensus 362 ~ 362 (366)
T PRK01533 362 D 362 (366)
T ss_pred c
Confidence 3
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=385.41 Aligned_cols=358 Identities=31% Similarity=0.515 Sum_probs=295.6
Q ss_pred CeeeeeccccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 39 GIIQMGLAENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 39 ~~i~L~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
++|+|++|.+... .+.+++++++... +.........|+++.|+++||+++|+++++..+ +.++++ +|+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~ 72 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIR-------GAATSSSFLGYPPPQGYPELREAIADFLGRRYG--VPVDPEANIL 72 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHH-------HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHT--HHTTGGEGEE
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHH-------HhhcccccccCCCchhhHHHHHHHHHHhhhccC--cccccceEEE
Confidence 5799999998886 2233333333211 001124577899999999999999999996665 557888 999
Q ss_pred EeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+++|+++++..++..+ .++||+|+++.|+|+.|...++.. |+++++++++.+++|.+|++.+++.+++...++.++++
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 151 (363)
T PF00155_consen 73 VTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLL-GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKA 151 (363)
T ss_dssp EESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHT-TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEE
T ss_pred EecccccchhhhhhcccccccccceecCCcccccccccccc-Cceeeeccccccccccccccccccccccccccccccce
Confidence 9999999999999999 889999999999999999999988 99999999887788999999999999865444335789
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
+++++|+||||.++|.+++++|+++|++||++||+||+|.++.++...+.+...... ...++++++|+||+|
T Consensus 152 v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--------~~~~vi~~~S~SK~~ 223 (363)
T PF00155_consen 152 VLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLD--------EDDNVIVVGSLSKSF 223 (363)
T ss_dssp EEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHT--------TTSTEEEEEESTTTT
T ss_pred eeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCccccccc--------ccccceeeeeccccc
Confidence 999999999999999999999999999999999999999998776553333223322 335699999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
|++|+|+||+++ ++.+.+.+......+..+++.|.++.+++.+.....++++++++.++++++.+.+.|++.|+.+.++
T Consensus 224 g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~ 302 (363)
T PF00155_consen 224 GLPGLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPP 302 (363)
T ss_dssp TSGGGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHH
T ss_pred cccccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeec
Confidence 999999999999 5555556665555554588999999999988765456899999999999999999999999999999
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L 424 (469)
++|+|+|+.++.. ++.+++++|++++||.+.||..|+. ++++|++++..+++++++++++|
T Consensus 303 ~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 303 EAGFFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp SBSSEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred cCccEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 9999999998853 4557889998878999999999987 88999999556999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=392.71 Aligned_cols=356 Identities=19% Similarity=0.271 Sum_probs=275.6
Q ss_pred CeeeeeccccccCh-HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhH-cCCCCCCC-CCcEE
Q 043923 39 GIIQMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEI-RGNKVTFD-TSKIV 115 (469)
Q Consensus 39 ~~i~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~-~~~~~~~~-~~~i~ 115 (469)
++|+|+.|++.+++ +.+.++.... .. .+|+++.|.++||++|++++.++ .+...... .++|+
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~~~~--------------~~-~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~ 165 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELVDGI--------------IG-DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLF 165 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHH--------------hc-CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEE
Confidence 57999999999864 5676755442 11 36999999999999999965443 32111111 34999
Q ss_pred EeCChHHHHHHHHHH-----hcCCCCEEEEccCCCcChHHHHhhh-CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 116 LTAGATSANETLMFC-----LAEPGEAFLLPTPYYPGFDRDLKWR-TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 116 ~t~G~~~al~~~~~~-----l~~~gd~Vl~~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+|+|+++|+..++.+ +++|||+|++++|+|+.|...+... .|+++++++.+++++|.+|++++++++++
T Consensus 166 vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~----- 240 (527)
T PRK09275 166 AVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP----- 240 (527)
T ss_pred EeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-----
Confidence 999999999999886 6899999999999999999887654 14666777766667899999999987654
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh--cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEE
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~--~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i 267 (469)
++++|+++|||||||.++|.+++++|+++|++ ++++||+||+|.++.+ .+.++... .++++|++
T Consensus 241 -~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~----------~~~~~I~v 306 (527)
T PRK09275 241 -SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAV----------LPYNTILV 306 (527)
T ss_pred -CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHh----------CCCCEEEE
Confidence 89999999999999999999999999999965 5999999999998543 23454444 23689999
Q ss_pred ccCccccCCCcceEEEEEecCHHHHH-H---H--------------------------------HHhcc--cccCcHHHH
Q 043923 268 YSLSKDLGLPGFRVGAIYSNDDMVVA-A---A--------------------------------TKMSS--FGLVSSQTQ 309 (469)
Q Consensus 268 ~S~SK~~g~~GlRiG~li~~~~~~~~-~---~--------------------------------~~~~~--~~~~s~~~q 309 (469)
+||||.||++|||+||++++++.+.+ . + .++.. ..+++.+.|
T Consensus 307 ~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q 386 (527)
T PRK09275 307 YSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQ 386 (527)
T ss_pred eehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHH
Confidence 99999999999999999998762211 1 1 12221 234677777
Q ss_pred HH-----HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccc---cCC-------hh
Q 043923 310 YL-----LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLR---SNT-------FE 374 (469)
Q Consensus 310 ~~-----~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~---~~~-------~~ 374 (469)
.+ +.+++... +++.+..++.+++|++.+.+.|. .++.+.++.++||+|++++.... ... ..
T Consensus 387 ~a~al~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~ 462 (527)
T PRK09275 387 VQMALFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNY 462 (527)
T ss_pred HHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccC
Confidence 76 23445442 55788899999999999988872 23444678999999999975321 000 12
Q ss_pred HHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 375 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 375 ~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++.+++.+|++++||.+.||+.|+. .++++|+|++..+++++.++.++|+++++++.+
T Consensus 463 ~~~~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 463 SPVDLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred CHHHHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999985 467899999977899999999999999999887
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=381.59 Aligned_cols=354 Identities=21% Similarity=0.360 Sum_probs=284.9
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
.++|+|+.+.+..+ ++.+.+.+.+... .....|++..|.++||+++++++.+.++ ++++++ +|+
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 89 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAIA------------GGVNQYPPGPGIPELRAAIAAQRRRRYG--LEYDPDTEVL 89 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 36799999986654 2333444333210 1235799889999999999999988776 345665 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCC-CCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSL-NGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+|+++|+..++.+++++||.|+++.|+|..+...+... |.+++.++++++ ++|.+|++++++.+.+ ++++
T Consensus 90 ~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~ 162 (387)
T PRK07777 90 VTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMA-GAHRVPVPLVPDGRGFALDLDALRAAVTP------RTRA 162 (387)
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHC-CCEEEEeecCCccCCCcCCHHHHHHhcCc------ccEE
Confidence 9999999999999999999999999999999999888877 999999998765 4688999999988764 7899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|+++|||||||.+++.+++++|+++|++|++++|+||+|.++.|++..+.++..+.. ..+++++++||||.|
T Consensus 163 v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~ 234 (387)
T PRK07777 163 LIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPG--------MRERTVTISSAAKTF 234 (387)
T ss_pred EEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCC--------CcCcEEEEeechhhc
Confidence 999999999999999999999999999999999999999988776544444443311 346899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|+||+|+||++++++ +.+.+..... .+..+.+.|.++..++... ..++++.++.++++++.+.+.|++.++++.
T Consensus 235 g~~GlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 310 (387)
T PRK07777 235 NVTGWKIGWACGPAP-LIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEAGFEVH 310 (387)
T ss_pred cCcCceeEEEecCHH-HHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 999999999999655 4444443332 2346778888888888754 456788889999999999999999999999
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~---~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
++++|+|+|++++.... .+..++++++++++||.|.||..|+.. .++++||+++. +++++++++++|+++.-
T Consensus 311 ~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 311 DSAGTYFLCADPRPLGY----DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRLRALRG 385 (387)
T ss_pred CCCcceEEEecccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 99999999999863111 123578888888889999999988642 25689999986 89999999999988653
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=379.44 Aligned_cols=332 Identities=21% Similarity=0.356 Sum_probs=272.8
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
+++||+.|+|+.+ ++.+.+++.+. ......|++. +.++||+++|++++ +++++|++|
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~-------------~~~~~~Y~~~-~~~~lr~~ia~~~~--------~~~~~i~it 77 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITEN-------------LDKLVEYPDP-DYLELRKRIASFEQ--------LDLENVILG 77 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHH-------------HHhhhcCCCc-cHHHHHHHHHHHhC--------CChhhEEEC
Confidence 4799999999885 45566666653 1335679865 67999999999985 689999999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
+|+++++..++.++ .+ +.|++++|+|+.|...+... |++++.++++.+++|.+| +++.+.+.+ +++++++
T Consensus 78 ~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d-~~~~~~~~~------~~~~v~~ 147 (354)
T PRK06358 78 NGATELIFNIVKVT-KP-KKVLILAPTFAEYERALKAF-DAEIEYAELTEETNFAAN-EIVLEEIKE------EIDLVFL 147 (354)
T ss_pred CCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHHHc-CCeeEEEeCccccCCCcc-HHHHHhhcc------CCCEEEE
Confidence 99999999999987 44 68999999999999988877 999999999866778888 555555533 6899999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
+|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. .+.....+ ..+++|+++||||+||+|
T Consensus 148 ~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~--------~~~~vi~~~S~SK~~gl~ 218 (354)
T PRK06358 148 CNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENET-ISMINYLE--------NFKNLIIIRAFTKFFAIP 218 (354)
T ss_pred eCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccc-hhHHHhcc--------CCCCEEEEEechhhccCc
Confidence 999999999999999999999999999999999999988765532 33333333 447999999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCc
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNA 356 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~ 356 (469)
|+|+||++++++.+...+.+....+.++.++|.++..++++.. ++++.++.++++++.+.+.|+++ ++++.++.+
T Consensus 219 G~RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g 294 (354)
T PRK06358 219 GLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDKE----YIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSV 294 (354)
T ss_pred chhheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcc
Confidence 9999999987666655566665566788999999999997643 46778888899999999999887 778887766
Q ss_pred eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 357 GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
.|+|++++.. .++++.++ ++||.|+||+.|+..+++++||+++ +++++++++++|.+++
T Consensus 295 -~f~~~~~~~~---------~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 295 -NFIFFKLEKP---------IDLRKELL-KKGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred -eEEEEEcCch---------HHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 5899998731 35777766 5699999999996545689999998 7999999999998875
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=374.28 Aligned_cols=335 Identities=20% Similarity=0.241 Sum_probs=260.7
Q ss_pred CCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 35 QNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 35 ~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
..+.++|+|+.|+|+++ ++.+.+++++. +.....|++.. ..+||++||++++ +++++
T Consensus 19 ~~~~~~i~l~~~~n~~~~~~~~~~a~~~~-------------~~~~~~Y~~~~-~~~Lr~aia~~~~--------v~~~~ 76 (360)
T PRK07392 19 CPPDAILDFSASINPLGPPESVIAAIQSA-------------LSALRHYPDPD-YRELRLALAQHHQ--------LPPEW 76 (360)
T ss_pred CCcccEEEeCCcCCCCCCCHHHHHHHHHH-------------HHHhhcCCCcC-HHHHHHHHHHHhC--------cChhh
Confidence 34557899999999985 46676666653 12356798764 5899999999994 68999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCc---ccCHHHHHHHHHHHHhcCC
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGF---QITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~---~~d~~~l~~~i~~~~~~~~ 190 (469)
|++|+|+++++..++.++. +||.|++++|+|..|...++.. |++++.+|++.++++ ..+++.+++.. .
T Consensus 77 I~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~ 147 (360)
T PRK07392 77 ILPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRALRAF-GATVKELPLPLDQPSPGLTLRLQTLPPQL-------T 147 (360)
T ss_pred EEECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHHHc-CCeEEEEecccccCCcccccCHHHHHHhc-------c
Confidence 9999999999999998875 6889999999999999999887 999999999765554 24455554332 2
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
++++++++|||||||.+++.+++.+ +++++++ +|+||+|.++.+++. ..+.....+ ..+++++++||
T Consensus 148 ~~~~~~l~nP~NPTG~~~~~~~l~~---l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~--------~~~~vi~i~S~ 214 (360)
T PRK07392 148 PNDGLLLNNPHNPTGKLWSREAILP---LLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLA--------EYPNLIILRSL 214 (360)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHH---HHHHCCE-EEEECchhhhccCcc-ccchHHHhh--------cCCCEEEEEec
Confidence 6789999999999999999887555 4557785 666999999766543 234444433 34789999999
Q ss_pred ccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 043923 271 SKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GI 349 (469)
Q Consensus 271 SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~ 349 (469)
||+||+||+|+||++++++.+ +.+.+....+.++.++|.++.++|++..+ .+..++.++++++.+.+.|+++ |+
T Consensus 215 SK~~~l~GlRiG~~v~~~~~~-~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~ 289 (360)
T PRK07392 215 TKFYSLPGLRLGYAIAHPDRL-QRWQQWRDPWPVNGLAAAAAIAALADRDF----QQQTWAWLPPAREALFQGLASLPGL 289 (360)
T ss_pred hhhhcCCchheeeeeCCHHHH-HHHHhhCCCCCCCHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999965544 44555555566899999999999987554 5556677888999999999887 77
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+.+ .+|+|+|++++. ++.+++.++++++||.|.||..|+..+++|+||+++. .++.+++.+.|.+++.
T Consensus 290 ~~~~-~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 290 TPLP-SAANFLLVQSQG--------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT--EAENQRLLEALAAILA 358 (360)
T ss_pred EECC-CCCCEEEEEcCC--------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHhh
Confidence 7765 677999998863 2346777878888999999999976567899999984 5556666666666543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=402.27 Aligned_cols=368 Identities=18% Similarity=0.283 Sum_probs=284.6
Q ss_pred CCCCCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 32 DEVQNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 32 ~~~~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
..+..+.++|+|+.|+|+++ ++.+.+++.+.. .. ..+ ..|++++++++++++.+++| ++.+
T Consensus 691 ~~~~~g~~vI~LsinE~d~ppPp~V~eAi~eal-------------~~-~~~--s~g~pdlr~aLa~~la~~~G--v~~d 752 (1082)
T PLN02672 691 VSGSQESSLIHMDVDESFLPVPSAVKASIFESF-------------VR-QNI--SESETDPRPSILQFIKSNYG--FPTD 752 (1082)
T ss_pred CcccCCCCEEEEeCCCCCCCCCHHHHHHHHHHH-------------hh-cCC--CCCChHHHHHHHHHHHHHhC--cCCC
Confidence 33444568999999999996 466777776531 11 112 34568899999999998877 3444
Q ss_pred C-CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 111 T-SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 111 ~-~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+ ++|++|+|+++++..++.+++++||.|+++.|+|+.|...++.. |++++.+|++.+++|.+|++.+++++++.
T Consensus 753 ~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~-Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~---- 827 (1082)
T PLN02672 753 SCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFL-KANFRRIPTKSSDGFKLTAKTLASTLETV---- 827 (1082)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhccC----
Confidence 3 58999999999999999999999999999999999999999988 99999999986678999999999988531
Q ss_pred CceeEEEEecCC-CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc--cchhhhhhccccccCCcCCeEEE
Q 043923 190 LKVKGVLVTNPS-NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF--VSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 190 ~~~~~vvl~~P~-NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
+.++|+++||+ ||||.+++.+++++|+++|++||++||+||+|+++.|++... .++.+...... ......++++
T Consensus 828 -~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~--~~sks~nVIv 904 (1082)
T PLN02672 828 -KKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLK--SSNPSFAVAL 904 (1082)
T ss_pred -CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhc--cccCCceEEE
Confidence 34578999997 999999999999999999999999999999999888865321 12222211100 0000137999
Q ss_pred EccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHH---hc--CchhhHHHHHHHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSAL---LS--DKKFTQNYISENKKRLKQRHRKLV 341 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~---l~--~~~~~~~~~~~~~~~l~~~~~~l~ 341 (469)
++||||.|++||+|+||++++++.+.+.+.+...........|.++.++ +. +..| .+++.+.++.++++++++.
T Consensus 905 L~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~ 983 (1082)
T PLN02672 905 LGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLK 983 (1082)
T ss_pred EeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977756665554433322333344443333 32 3445 6778888999999999999
Q ss_pred HHHHhcCCceecCCceEEEEEecccccc----cC-------ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee
Q 043923 342 SGLEKAGISCLKSNAGLFCWVDMRHLLR----SN-------TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 410 (469)
Q Consensus 342 ~~L~~~g~~v~~~~~g~~~~v~~~~~~~----~~-------~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~ 410 (469)
+.|+++|+++.+|++|||+|++++.... .+ ...++.++++++++++||.+.||+.|+. ++|+||+++
T Consensus 984 e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa 1061 (1082)
T PLN02672 984 ETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFA 1061 (1082)
T ss_pred HHHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEec
Confidence 9999999999999999999998753211 00 0123557899999888999999988864 789999999
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 043923 411 NMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 411 ~~~~e~i~~~l~~L~~~l~ 429 (469)
. +++++++++++|+++++
T Consensus 1062 ~-~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1062 L-EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred C-CHHHHHHHHHHHHHHHH
Confidence 5 88999999999999765
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=347.33 Aligned_cols=360 Identities=21% Similarity=0.331 Sum_probs=306.7
Q ss_pred CeeeeeccccccC-----hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 39 GIIQMGLAENQLS-----FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 39 ~~i~L~~~~n~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
.+|.|+.|.+..- .+...+++..... ......|.|..|....|+++|+|+.+... -.+++++
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~-----------Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~--~kl~a~D 128 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALR-----------SGKGNGYAPSVGILPARRAVAEYLNRDLP--NKLTADD 128 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHh-----------cCCCCCcCCccccHHHHHHHHHHhhcCCC--CccCcCc
Confidence 6899999877652 1334444444211 14567899999999999999999886654 3478999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++|+|.++||++++.+|.+||..|++|.|+|+-|...+... |+++..+.+-++.+|.+|++.++..+++ ++.
T Consensus 129 V~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~-~lEVR~ydlLPe~~weIDL~~veal~DE------NT~ 201 (447)
T KOG0259|consen 129 VVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYS-GLEVRYYDLLPEKDWEIDLDGVEALADE------NTV 201 (447)
T ss_pred eEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhc-CceeEeecccCcccceechHHHHHhhcc------Cee
Confidence 999999999999999999999999999999999888777766 9999999998889999999999999887 999
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+++++||+||+|.+++.+-|++|++.|+++++.||.||+|.+++|++.++.++.++... -.++.++|+||.
T Consensus 202 AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi---------VPVitlggisKr 272 (447)
T KOG0259|consen 202 AIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI---------VPVITLGGISKR 272 (447)
T ss_pred EEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc---------CceEeecccccc
Confidence 99999999999999999999999999999999999999999999999999998888542 468999999999
Q ss_pred cCCCcceEEEEEecCHH-------HHHHHHHhccc-ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 274 LGLPGFRVGAIYSNDDM-------VVAAATKMSSF-GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~-------~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
|=.||||+||++..+.. +.+.+.++... ..++++.|.|+-.+|.... +++.......++.+.+.-.+.|+
T Consensus 273 W~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~~~lk~na~l~y~~Lk 350 (447)
T KOG0259|consen 273 WIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKLSFLKSNADLCYSRLK 350 (447)
T ss_pred cccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHHHHHHhhHHHHHHHHh
Confidence 99999999999875432 22344443332 3477899999999998765 77889999999999999999999
Q ss_pred hc-CCc-eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHH
Q 043923 346 KA-GIS-CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 423 (469)
Q Consensus 346 ~~-g~~-v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~ 423 (469)
+. ++. ...|++.+|+|+++.-..- ..++++.+++.+|.+|..+.+.||..|+. ++|+|++++ +..+.++++..|
T Consensus 351 ~IP~l~cp~kPeg~mylmv~l~~s~~-~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~-~~~~~leea~~R 426 (447)
T KOG0259|consen 351 DIPCLTCPVKPEGCMYLMVKLNLSLF-PDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVIT-VEEEMLEEAFSR 426 (447)
T ss_pred cCCCcccCcCCCcceEEEeccchhhh-ccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEc-cChHHHHHHHHH
Confidence 88 677 5689999999999874211 23466789999999999999999999985 899999998 599999999999
Q ss_pred HHHHHHhhcc
Q 043923 424 LKAFVDSITT 433 (469)
Q Consensus 424 L~~~l~~~~~ 433 (469)
|+++++++-+
T Consensus 427 ik~Fc~RH~~ 436 (447)
T KOG0259|consen 427 IKEFCDRHSK 436 (447)
T ss_pred HHHHHHhhhh
Confidence 9999998875
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=370.25 Aligned_cols=315 Identities=15% Similarity=0.245 Sum_probs=251.0
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
.+|+|+.|+|++++ ......||+.. ..+||+++|++++ +++++|++|+
T Consensus 17 ~~i~l~~Nenp~~~-----------------------~~~~~~Yp~~~-~~~lr~~ia~~~~--------~~~~~I~it~ 64 (332)
T PRK06425 17 RIIDFSANINDFMD-----------------------IGDISIYPEIS-YTDIEDQIKIYTQ--------GLKIKVLIGP 64 (332)
T ss_pred CEEEeccccCCCcC-----------------------hhhcccCcCcC-HHHHHHHHHHHhC--------CCcceEEECC
Confidence 67999999999851 13356798764 6999999999997 6899999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~ 198 (469)
|+++++..++.. +++|+ |++++|+|+.|...++.. |++++.+|++. +.+|.+.+++ .+++++++|
T Consensus 65 Gs~~~l~~~~~~-~~~~~-vv~~~P~y~~y~~~~~~~-G~~v~~vp~~~---~~~~~~~l~~---------~~~k~v~l~ 129 (332)
T PRK06425 65 GLTHFIYRLLSY-INVGN-IIIVEPNFNEYKGYAFTH-GIRISALPFNL---INNNPEILNN---------YNFDLIFIV 129 (332)
T ss_pred CHHHHHHHHHHH-hCCCc-EEEeCCChHHHHHHHHHc-CCeEEEEeCCc---ccCcHHHHhh---------cCCCEEEEe
Confidence 999999999974 57775 777799999999999988 99999999863 3345444432 178999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc
Q 043923 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG 278 (469)
Q Consensus 199 ~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 278 (469)
|||||||.+++.+++++|+++|++++++||+||+|.++.+++. .+...+.+ ..+++|+++||||+||+||
T Consensus 130 nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~--~~~~~~~~--------~~~~vi~~~SfSK~~~l~G 199 (332)
T PRK06425 130 SPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA--EEDVLLNR--------SYGNVIIGRSLTKILGIPS 199 (332)
T ss_pred CCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc--hhHHHHhc--------cCCCEEEEeecHHhcCCch
Confidence 9999999999999999999999999999999999999765432 24444433 3478999999999999999
Q ss_pred ceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceE
Q 043923 279 FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGL 358 (469)
Q Consensus 279 lRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~ 358 (469)
+|+||++++++ +.+.+.+....+.++.+++.+ +..... ..++++.++.++++++++.+.|+++|+++..+.+|+
T Consensus 200 lRiGy~v~~~~-li~~l~~~~~~~~~~~~~~~~----l~~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~ 273 (332)
T PRK06425 200 LRIGYIATDDY-NMKISRKITEPWSVCDPAIDF----IRSIDL-DYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSAN 273 (332)
T ss_pred hhheeeecCHH-HHHHHHHcCCCCccCHHHHHH----HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCce
Confidence 99999999655 555555555555455544333 322232 456677889999999999999999998876555678
Q ss_pred EEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 359 FCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 359 ~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
|+|++++. ..++.+.++ ++||.|+||+.|+..+++|+||+++ +++++++++++|++++
T Consensus 274 f~~~~~~~---------~~~~~~~l~-~~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 274 FITFMIPD---------AHDFYSYLL-KNGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred EEEEEcCC---------HHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 99999861 235677776 4699999999997555689999998 6899999999999875
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=373.99 Aligned_cols=334 Identities=19% Similarity=0.274 Sum_probs=268.7
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|+|+.|+|+++ ++.+.+++.+.. .....|++. ++.+||+++|++++ +++++|+
T Consensus 19 ~~~~i~l~~~~~~~~~p~~~~~a~~~~~-------------~~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~ 76 (356)
T PRK08056 19 PDQLLDFSANINPLGMPVSLKRAIIDNL-------------DCAERYPDV-EYRHLHQALARHHQ--------VPASWIL 76 (356)
T ss_pred hhhEEEeccccCCCCCCHHHHHHHHHHH-------------HhcccCcCc-cHHHHHHHHHHHhC--------cChhhEE
Confidence 457899999999985 466677666531 223468765 68999999999985 6899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.++ .+|+ +++++|+|..|...++.. |++++.+|++.+++|.+| +++.+.+.+ +++++
T Consensus 77 it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~-~~~~~~~~~------~~k~v 146 (356)
T PRK08056 77 AGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQQV-GCEIRRYSLREADGWQLT-DAILEALTP------DLDCL 146 (356)
T ss_pred ECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHc-CCeEEEEecccccCCCcc-HHHHHhccC------CCCEE
Confidence 9999999999999887 6776 778899999999888887 999999999766678777 344444432 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++..+.+ ... ..+++++++||||+||
T Consensus 147 ~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~---~~~--------~~~~~i~~~S~SK~~~ 215 (356)
T PRK08056 147 FLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIP---QLA--------DNPHLWVLRSLTKFYA 215 (356)
T ss_pred EEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHH---Hhc--------cCCCEEEEEechhhcc
Confidence 99999999999999999999999999999999999999987654422222 222 2368999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS 354 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~ 354 (469)
++|+|+||++++++.+.+.+.+....+.++.+.|.++..++++..+ .++.++.++++++.+.+.|+++ ++.+.++
T Consensus 216 ~~G~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~ 291 (356)
T PRK08056 216 IPGLRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDRAY----QQATWQWLAEEGARFYQALCALPLLTVWPG 291 (356)
T ss_pred CcchhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHhcCCCcEEcCC
Confidence 9999999999866555555655555666788899999999976444 6777888999999999999887 7777655
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+|+|+|++++.. ..+++..++ ++||.|++|..|....++|+||+++ ++++++.++++|+++++
T Consensus 292 -~~~~~~~~~~~~--------~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 292 -RANYLFLRCERP--------DIDLQRALL-TQRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVLT 354 (356)
T ss_pred -CCcEEEEEcCCC--------hHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHHc
Confidence 568999998731 225667666 5799999999996555679999998 68999999999988764
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=378.41 Aligned_cols=345 Identities=17% Similarity=0.240 Sum_probs=269.9
Q ss_pred CCeeeeecccc---cc-Ch--HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLAEN---QL-SF--DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~~n---~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
+++|||+.|.+ .. .+ +.+.+++.+.... .....|++..|.++||+++|+++.+..+ ..+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~-----------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~ 92 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET-----------ETTKNYLPIEGLAAYRQAVQELLFGADS--PALAA 92 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhccc-----------ccCCCcCCCCCCHHHHHHHHHHhcCCCC--ccccc
Confidence 37899999953 22 22 4566666654211 2345799999999999999999975433 22478
Q ss_pred CcE--EEeCChHHHHHHHHHHh--cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 112 SKI--VLTAGATSANETLMFCL--AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 112 ~~i--~~t~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
++| ++|+|+++|+..+++++ +++||+|++++|+|+.|...++.. |++++.+|+...++|.+|++.+++++++.
T Consensus 93 ~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~l~~~~~~~-- 169 (396)
T PRK09257 93 GRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAA-GLEVKTYPYYDAATKGLDFDAMLADLSQA-- 169 (396)
T ss_pred CeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHc-CCcEEEEeccccccCccCHHHHHHHHHhC--
Confidence 887 99999999999998766 589999999999999999999987 99999999843345789999999888642
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC-CCCccchhhhhhccccccCCcCCeEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
.++..+++++|||||||.++|.+++++|+++|++|+++||+||+|.++.++ +....++..+.+ ..+++++
T Consensus 170 -~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~--------~~~~vi~ 240 (396)
T PRK09257 170 -PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA--------AGLELLV 240 (396)
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHh--------cCCcEEE
Confidence 123566677999999999999999999999999999999999999987654 222334444422 3368999
Q ss_pred EccCccccCCCcceEEEEEe--cC-HHHHHH---HHHh--cccccCcHHHHHHHHHHhcCchh---hHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYS--ND-DMVVAA---ATKM--SSFGLVSSQTQYLLSALLSDKKF---TQNYISENKKRLKQ 335 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~--~~-~~~~~~---~~~~--~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~l~~ 335 (469)
++||||+|+++|+|+||+++ ++ +.+... +... ..+++++.+.|.++..++.++.+ ..+++++.++.+++
T Consensus 241 i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~ 320 (396)
T PRK09257 241 ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKA 320 (396)
T ss_pred EEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999984 33 222222 2221 23344678899999999988643 26778889999999
Q ss_pred HHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec
Q 043923 336 RHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 411 (469)
Q Consensus 336 ~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~ 411 (469)
+++.+.+.|++++ +++..+++|+|+|++++. +++.++++++||.+.|. + ||+++.
T Consensus 321 rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------~~~~~l~~~~~V~~~p~--------~--ri~~~~ 379 (396)
T PRK09257 321 MRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------EQVDRLREEFGVYAVGS--------G--RINVAG 379 (396)
T ss_pred HHHHHHHHHHhcCCCCCcccccccceEEEecCCCH-----------HHHHHHHHcCCEEEcCC--------C--eEEEee
Confidence 9999999999874 667789999999999862 35677888999999862 2 999987
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043923 412 MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 412 ~~~e~i~~~l~~L~~~l 428 (469)
++++++++++++|++++
T Consensus 380 ~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 380 LNESNIDYVAEAIAAVL 396 (396)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 79999999999998753
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=371.18 Aligned_cols=328 Identities=16% Similarity=0.266 Sum_probs=263.6
Q ss_pred CCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 36 NPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
.+.++|+|+.|+|+++ ++.+.+++.+.. .....|++ .|.++||+++|++++ +++++|
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~I 85 (357)
T PRK14809 28 DPDDLVKLSSNENPHGPSPAAVEAIREAA-------------ERVHSYPK-ASHADLTAALADRWD--------VSPEQV 85 (357)
T ss_pred CccceeEecCCCCCCCCCHHHHHHHHHHH-------------hhhhcCCC-CCHHHHHHHHHHHhC--------CCcceE
Confidence 3557999999999985 455666665531 23457875 578999999999985 689999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++++++++||.|++++|+|..|...+... |.+++.++++.+++|.++++++.+... ++++
T Consensus 86 ~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~-g~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~k~ 157 (357)
T PRK14809 86 WLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYH-HGEVREYPVSKADDFEQTADTVLDAYD-------GERI 157 (357)
T ss_pred EECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEEecccCcCCCcCHHHHHHhhc-------CCcE
Confidence 99999999999999999999999999999999887777766 999999998765678888877766542 6789
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|+++|||||||.++|.+++++|+++|++ +++||+||+|.++.+.. +.....+ ..+++++++||||.|
T Consensus 158 i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~----~~~~~~~--------~~~~vi~~~SfSK~~ 224 (357)
T PRK14809 158 VYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP----SAVALVE--------ERDDVAVLRTFSKAY 224 (357)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc----hhHHHHh--------hCCCEEEEecchhHh
Confidence 9999999999999999999999999875 78999999999865432 2222222 347899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
|+||+|+||++++++ +.+.+.+....+.++.+.|.++.++|.+. +++++.++.++++++.+.+.|.... . +
T Consensus 225 ~~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~---~-~ 295 (357)
T PRK14809 225 GLAGLRLGYAVVPEE-WADAYARVNTPFAASELACRAGLAALDDD----EHVERTVETARWAREYIREELDAPT---W-E 295 (357)
T ss_pred cCcchhheeeecCHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHhcCcc---C-C
Confidence 999999999999655 44455555555567889999998988763 4577788888889999999887542 2 4
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+|+|+|++++. ..++++.+ +++||.|+||+.|+. ++++||+++ +++++++++++|+++++
T Consensus 296 ~~g~f~~~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 296 SAGNFVLAEVGD---------ASAVAEAA-QERGVIVRDCTSFGL--PECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred CCCCEEEEECCC---------HHHHHHHH-HHCCEEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 567999998852 23566664 577999999999863 579999997 57999999999999875
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=377.30 Aligned_cols=346 Identities=15% Similarity=0.206 Sum_probs=268.2
Q ss_pred CCeeeeeccccc-c-ChH----HHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLAENQ-L-SFD----LLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~~n~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
+++|||+.|.++ . ++. .+.+++.+... ......|++..|.++||+++|+++.+..+ ..+++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~ 95 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAE-----------KNLDKEYLPIEGLQSFIEAAQKLLFGEAS--YALAE 95 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhcc-----------ccCCCCCCCCCCCHHHHHHHHHHhcCCCc--ccccc
Confidence 477999999752 3 222 33444332110 02346799999999999999999864432 33678
Q ss_pred CcEE--EeCChHHHHHHHHH---HhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 112 SKIV--LTAGATSANETLMF---CLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 112 ~~i~--~t~G~~~al~~~~~---~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
++|+ .|.|+++++..++. +++++||+|++++|+|+.|...++.. |++++.+|+..+++|.+|++.+++++.+.
T Consensus 96 ~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~l~~~~~~~~d~~~l~~~~~~~- 173 (404)
T PTZ00376 96 KRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSA-GLNVKEYRYYDPKTKGLDFDGMLEDLRTA- 173 (404)
T ss_pred CeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCceeeccccCcccCCcCHHHHHHHHHhC-
Confidence 8998 59999999988875 56899999999999999999999987 99999999954456889999999988642
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC--CccchhhhhhccccccCCcCCeE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
.++.++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. ...++..+.. ..+++
T Consensus 174 --~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~--------~~~~v 243 (404)
T PTZ00376 174 --PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAE--------RGVEF 243 (404)
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHh--------cCCcE
Confidence 12456778899999999999999999999999999999999999999877531 2223333322 33589
Q ss_pred EEEccCccccCCCcceEEEEE---ecCHH---HHHHHHHh-cc-cccCcHHHHHHHHHHhcCchhhH---HHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIY---SNDDM---VVAAATKM-SS-FGLVSSQTQYLLSALLSDKKFTQ---NYISENKKRL 333 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li---~~~~~---~~~~~~~~-~~-~~~~s~~~q~~~~~~l~~~~~~~---~~~~~~~~~l 333 (469)
++++||||+||++|+|+||++ ++++. +.+.+.+. .. +++++.+.|.++..+|.+..+.+ +++++.++++
T Consensus 244 i~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 323 (404)
T PTZ00376 244 LVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRI 323 (404)
T ss_pred EEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 44432 22222222 22 33457789999999998865433 3456667889
Q ss_pred HHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe
Q 043923 334 KQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 409 (469)
Q Consensus 334 ~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~ 409 (469)
+++++.+.+.|++++ +.+..+++|+|+|++++. +++++|++++||.+.|| + ||++
T Consensus 324 ~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~-----------~~~~~L~~~~~v~v~p~--------~--Ris~ 382 (404)
T PTZ00376 324 QNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTK-----------EQVERLIEKYHIYLLDN--------G--RISV 382 (404)
T ss_pred HHHHHHHHHHHHhcCCCCcccccccCceEEEecCCCH-----------HHHHHHHHhCCEeecCC--------C--eEEE
Confidence 999999999999875 456678999999998852 57888998889999987 1 9999
Q ss_pred ecCCHHHHHHHHHHHHHHHH
Q 043923 410 ANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 410 ~~~~~e~i~~~l~~L~~~l~ 429 (469)
+.++++++++++++|++++.
T Consensus 383 ~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 383 AGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred eccCHHhHHHHHHHHHHHHh
Confidence 86799999999999999875
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=369.08 Aligned_cols=335 Identities=22% Similarity=0.354 Sum_probs=265.2
Q ss_pred CCCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCC-CCC
Q 043923 34 VQNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVT-FDT 111 (469)
Q Consensus 34 ~~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~-~~~ 111 (469)
..++.++|+|+.+.+..+ ++.+.+++.+. .....|++..|.++||+++|+++.++++ ++ +++
T Consensus 23 ~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~--------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~~--~~~~~~ 86 (364)
T PRK07865 23 AAHPDGIVDLSVGTPVDPVPPVIQEALAAA--------------ADAPGYPTTAGTPELREAIVGWLARRRG--VTGLDP 86 (364)
T ss_pred HhcCCCEEEcCCCCCCCCCCHHHHHHHHHH--------------HhhCCCCCccCCHHHHHHHHHHHHHHcC--CCCCCc
Confidence 344557899999976554 35666666542 1124799989999999999999988776 43 679
Q ss_pred CcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCC
Q 043923 112 SKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
++|++|+|+++++..++.++ +++||.|++++|+|+.|...+... |++++.++. +++++. .
T Consensus 87 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~---------~~~l~~---------~ 147 (364)
T PRK07865 87 AAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLA-GATVVRADS---------LTELGP---------Q 147 (364)
T ss_pred ccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhc-CCEEEecCC---------hhhCCc---------c
Confidence 99999999999999988888 799999999999999999888877 999988752 222221 1
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhh-hhccccccCCcCCeEEEEcc
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI-LKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~i~i~S 269 (469)
++++|+++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.. .+.... .. .+..+++++++|
T Consensus 148 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~------~~~~~~~i~~~S 220 (364)
T PRK07865 148 RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEP-VSILDPRVC------GGDHTGLLAVHS 220 (364)
T ss_pred cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCC-Ccccccccc------CCccceEEEEee
Confidence 7899999999999999999999999999999999999999999987665432 221110 00 013468999999
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
|||.||+||+|+||++++++.+ +.+.... ..++++++.|.++.++|.+. +++++.++.++++++.+.+.|++.
T Consensus 221 ~SK~~~~~GlRiG~i~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~ 295 (364)
T PRK07865 221 LSKQSNLAGYRAGFVAGDPALV-AELLEVRKHAGMMVPAPVQAAMVAALGDD----AHVREQRERYARRRAVLRPALEAA 295 (364)
T ss_pred chhccCCCceeeEEEecCHHHH-HHHHHHHHhcCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999965544 4443322 23457889999999999874 346778889999999999999999
Q ss_pred CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 348 GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 348 g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
|+.+..+++|+|+|+.++. +..+++.. ++++||.+.||..|+...++++||+++. +++++++++++|+
T Consensus 296 g~~~~~~~~~~~~~~~~~~--------~~~~~~~~-l~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 363 (364)
T PRK07865 296 GFRVDHSEAGLYLWATRGE--------DCWDTVAW-LAERGILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERLA 363 (364)
T ss_pred CCcccCCCccEEEEEeCCC--------CHHHHHHH-HHHCCEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHhh
Confidence 9988889999999998742 12234444 4577999999998876567899999985 8999999999985
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=371.94 Aligned_cols=335 Identities=18% Similarity=0.254 Sum_probs=271.6
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|+|+.|+|++. ++.+.+++.+.. .....|++..| .+||+++|++++ +++++|+
T Consensus 35 ~~~~i~l~~~~~~~~~~~~~~~al~~~~-------------~~~~~Y~~~~g-~~lr~~ia~~~~--------~~~~~i~ 92 (371)
T PRK05166 35 VPRIAKLGSNENPLGPSPAVRRAFADIA-------------ELLRLYPDPQG-RALREAIAARTG--------VPADRII 92 (371)
T ss_pred CcceEEcCCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCCCcH-HHHHHHHHHHhC--------cCHHHEE
Confidence 447899999999984 566777766531 23567998888 599999999985 5789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|+++.|+|..+...++.. |++++.++++. ++.+|++++++.+++ +++++
T Consensus 93 ~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~~~~------~~~~v 163 (371)
T PRK05166 93 LGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMM-GARVERVTVTP--DLGFDLDALCAAVAR------APRML 163 (371)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCeEEEeecCC--CCCCCHHHHHHhhhc------CCCEE
Confidence 9999999999999999999999999999999998888877 99999999874 467899999988865 67899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.+++++|+++|++ +++||+||+|.++.++. ...+......+ ..+++++++||||.||
T Consensus 164 ~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~~~-------~~~~vi~i~SfSK~~~ 234 (371)
T PRK05166 164 MFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD-DYPSALTLLKA-------RGLPWIVLRTFSKAYG 234 (371)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc-CcccHHHHHhh-------cCCCEEEEeechHhhh
Confidence 999999999999999999999999874 88999999999876433 23344444331 2357999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
++|+|+||++++++.+.+.+.+....+.++.++|.++.+++.+.+ ++++.++.++++++.+.+.|++.|+++.+ .
T Consensus 235 l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~p-~ 309 (371)
T PRK05166 235 LAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDEE----HLAKGVALALAERERLKKELAEMGYRIAP-S 309 (371)
T ss_pred cchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCcCeeCC-C
Confidence 999999999876677766666665566688999988888887644 46777788888999999999998887654 4
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+|+|+|++++. ++.++++.++ ++||.++||..++ .++++||+++ ++++++.++++|+.++.
T Consensus 310 ~g~fl~~~~~~--------~~~~l~~~l~-~~gi~v~p~~~~~--~~~~iRi~~~--~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 310 RANFLFFDARR--------PASAVAEALL-RQGVIVKPWKQPG--FETFIRVSIG--SPEENDHFVAALDKVLE 370 (371)
T ss_pred cCCEEEEeCCC--------CHHHHHHHHH-HCCeEEecCCCCC--CCCeEEEEcC--CHHHHHHHHHHHHHHhh
Confidence 56899999752 1335777776 4699999997654 3789999998 57778888888877643
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=369.47 Aligned_cols=341 Identities=19% Similarity=0.250 Sum_probs=264.7
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
.+++|+.|+|+++ ++.+.+++.+.... ......|++ .|.++||++||++++++++.++.+++++|++|
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it 97 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQ----------GIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVG 97 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhh----------cccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEc
Confidence 5899999999985 46677776653110 011356875 69999999999999887654466889999999
Q ss_pred CChHHHHHHHHHHhcCCCC-EEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 118 AGATSANETLMFCLAEPGE-AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd-~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+|+++++..++.+++.+|| .|++++|+|..|...++.. |++++.++++. ++|.+|++++++++++.. .+++++|+
T Consensus 98 ~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~--~~~~k~i~ 173 (374)
T PRK02610 98 NGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTL-GIPVVRVGRDP-ETFEIDLAAAQSAIEQTQ--NPPVRVVF 173 (374)
T ss_pred CChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEecCCc-ccCCCCHHHHHHHHHhhc--CCCceEEE
Confidence 9999999988888877886 8999999999999999887 99999999864 458899999999886311 12789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.++|.+++++++++| ++++||+||+|.++.+ . ..+..+ . ..+++|+++||||+||+
T Consensus 174 l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~--~--~~~~~~-~--------~~~~~ivi~SfSK~~g~ 238 (374)
T PRK02610 174 VVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ--T--TLVGEL-A--------QHPNWVILRTFSKAFRL 238 (374)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc--c--chHHHH-h--------cCCCEEEEEecchhccC
Confidence 999999999999999999999876 4999999999998532 1 122222 2 23678899999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~ 355 (469)
||+|+||++++++ +.+.+.+....+.++++.|.++..++.+. +.+.+..++.+++ ++.+.+.|+++ ++.+. +.
T Consensus 239 ~GlRiG~~v~~~~-l~~~l~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~-p~ 312 (374)
T PRK02610 239 AAHRVGYAIGHPE-LIAVLEKVRLPYNLPSFSQLAAQLALEHR---QELLAAIPEILQE-RDRLYQALQELPQLRVW-PS 312 (374)
T ss_pred cccceeeeecCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeC-CC
Confidence 9999999999554 55555555555568899999999999764 3445555555554 67788888877 66654 67
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+|+|+|++++... ++.+++..+ .++||.|+++ ++++||+++ +++++++++++|+++++.+
T Consensus 313 ~g~f~~~~l~~~~------~~~~~~~~l-~~~gi~v~~~-------~~~lRls~~--~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 313 AANFLYLRLSQDA------ALAALHQAL-KAQGTLVRHT-------GGGLRITIG--TPEENQRTLERLQAALTQL 372 (374)
T ss_pred cceEEEEeCCCCC------CHHHHHHHH-HHCCEEEEeC-------CCeEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence 7899999997532 233566655 5779999864 468999998 4678999999999998754
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=376.46 Aligned_cols=353 Identities=19% Similarity=0.289 Sum_probs=269.6
Q ss_pred CeeeeeccccccChH-HHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHH-HHHhHcCCCCCCCCC--cE
Q 043923 39 GIIQMGLAENQLSFD-LLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVE-FMSEIRGNKVTFDTS--KI 114 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~-~l~~~~~~~~~~~~~--~i 114 (469)
++|+|+.+++.++++ .+.++.... . ..+|+++.|..++++++++ ++++.++.. ..+++ +|
T Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~--------------~-~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~-~~~~~~~~V 158 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFLYEMCDGI--------------I-GDNYPVPDRMLPHSEKIVHQYLIQEMCGN-KPPPGEFDL 158 (521)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHh--------------h-cCCCCCCCCCHHHHHHHHHHHHHhhccCC-CCCCCcCeE
Confidence 579999999998754 454444332 1 1269877777888888885 666554321 12334 89
Q ss_pred EEeCChHHHHHHHHHH-----hcCCCCEEEEccCCCcChHHHHhhh-CCCEEEEeeccCCCC-----cccCHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFC-----LAEPGEAFLLPTPYYPGFDRDLKWR-TGVEIVPIQCTSLNG-----FQITETAIEEAYQ 183 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~-----l~~~gd~Vl~~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~-----~~~d~~~l~~~i~ 183 (469)
++|+|+++|+..++.+ +++|||+|++++|+|+.|...+... .|++++.+++++.++ |.+|+++++++++
T Consensus 159 ~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~ 238 (521)
T TIGR03801 159 FAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD 238 (521)
T ss_pred EEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC
Confidence 9999999999999887 7899999999999999999886653 278888888865433 9999999988765
Q ss_pred HHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccccccccCCCCccchhhhhhccccccCCcC
Q 043923 184 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261 (469)
Q Consensus 184 ~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 261 (469)
+ ++++++++|||||||.++|.+++++|+++|++| +++||+||+|.++.+ .+.++.+. .+
T Consensus 239 ~------~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~----------~~ 299 (521)
T TIGR03801 239 P------SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAE----------LP 299 (521)
T ss_pred C------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhh----------CC
Confidence 4 899999999999999999999999999999987 999999999998643 33455444 23
Q ss_pred CeEEEEccCccccCCCcceEEEEEecCHHHH------------HHH------------------------HHhcc--ccc
Q 043923 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVV------------AAA------------------------TKMSS--FGL 303 (469)
Q Consensus 262 ~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~------------~~~------------------------~~~~~--~~~ 303 (469)
+++|+++||||.||++|||+||++++++.+. +.+ ++... ..+
T Consensus 300 ~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g 379 (521)
T TIGR03801 300 YNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAG 379 (521)
T ss_pred CCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCC
Confidence 6899999999999999999999999765221 111 11111 123
Q ss_pred CcHHHHH--H---HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eecCCceEEEEEeccccccc---CC-
Q 043923 304 VSSQTQY--L---LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS--CLKSNAGLFCWVDMRHLLRS---NT- 372 (469)
Q Consensus 304 ~s~~~q~--~---~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~--v~~~~~g~~~~v~~~~~~~~---~~- 372 (469)
++.+.|. + +.+++... +.+.+..++.+++|++.+.+.| |+. +.++.+++|+|++++..... ..
T Consensus 380 ~s~p~Q~q~al~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f 453 (521)
T TIGR03801 380 LSTPQQVQMALFSLFALMDKE---NAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEF 453 (521)
T ss_pred CCcHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHH
Confidence 5666665 3 34455432 5678889999999999999888 444 45788999999999853210 00
Q ss_pred ------hhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 373 ------FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 373 ------~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..++.+++.+|++++||.+.||..|+.. .+++|||++..+++++.++.++|+++++++.+
T Consensus 454 ~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 454 SSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0135689999999999999999999863 56899999877999999999999999988765
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=366.58 Aligned_cols=344 Identities=22% Similarity=0.358 Sum_probs=267.7
Q ss_pred hhhcCCCCCCCCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHc
Q 043923 25 EYEKNPYDEVQNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIR 103 (469)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~ 103 (469)
.+..-......++.++|+|+.|.+..+ ++.+.+++.+. .....|++..|.++||+++++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~--------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~ 73 (357)
T TIGR03539 8 SLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAA--------------ADAPGYPQTWGTPELREAIVDWLERRR 73 (357)
T ss_pred HHHHHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHH--------------HhhCCCCcccCCHHHHHHHHHHHHHhc
Confidence 333333344456677899999977655 45566666542 223579999999999999999998876
Q ss_pred CCCCC-CCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHH
Q 043923 104 GNKVT-FDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEA 181 (469)
Q Consensus 104 ~~~~~-~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 181 (469)
+ ++ +++++|++|+|+++++..++..+ +++||.|++++|+|+.+...+... |++++.++ +++.+..
T Consensus 74 ~--~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~---------~~~~l~~- 140 (357)
T TIGR03539 74 G--VPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLA-GATPVAAD---------DPTELDP- 140 (357)
T ss_pred C--CCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhc-CCEEeccC---------ChhhcCc-
Confidence 6 43 78899999999999999998888 799999999999999998888776 99988774 2222221
Q ss_pred HHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcC
Q 043923 182 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261 (469)
Q Consensus 182 i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 261 (469)
.++++|+++||+||||.++|.+++++|+++|++||++||+||+|.++.|++.. .+... +.. .....
T Consensus 141 --------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~--~~~---~~~~~ 206 (357)
T TIGR03539 141 --------VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRP-VSILD--PRV---CGGDH 206 (357)
T ss_pred --------cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCC-cccee--ccc---CCCcc
Confidence 27899999999999999999999999999999999999999999987665432 22111 000 00123
Q ss_pred CeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHH
Q 043923 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRK 339 (469)
Q Consensus 262 ~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 339 (469)
+++++++||||.||++|+|+||++++++ +.+.+.... ..++++.+.|.++..+|.+. ++++..++.+++++++
T Consensus 207 ~~vi~~~S~SK~~~~~G~R~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~ 281 (357)
T TIGR03539 207 TGLLAVHSLSKRSNLAGYRAGFVAGDPA-LVAELLTVRKHAGLMVPAPVQAAMVAALGDD----GHVAEQKARYAARRAQ 281 (357)
T ss_pred ccEEEEeccccccCCCceeEEEEecCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 444443333 23457889999999999763 3467778889999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHH
Q 043923 340 LVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419 (469)
Q Consensus 340 l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~ 419 (469)
+.+.|.+.|+.+.++++|+|+|++++. +..++.+.+ .++||.|.||..|+...++++||+++. +++++++
T Consensus 282 ~~~~L~~~g~~~~~p~~~~~~~~~~~~--------~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~ 351 (357)
T TIGR03539 282 LKPALEKAGFRIDHSEAGLYLWATRGE--------DAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTA-TDERIAA 351 (357)
T ss_pred HHHHHHHcCCCCcCCCccEEEEEECCC--------CHHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecC-CHHHHHH
Confidence 999999989998899999999999863 122455554 577999999998876567899999996 7899999
Q ss_pred HHHHH
Q 043923 420 SMQRL 424 (469)
Q Consensus 420 ~l~~L 424 (469)
++++|
T Consensus 352 ~~~~l 356 (357)
T TIGR03539 352 AVARL 356 (357)
T ss_pred HHHhh
Confidence 99886
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-46 Score=369.51 Aligned_cols=328 Identities=18% Similarity=0.265 Sum_probs=266.6
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
++|+|+.|+|+++ ++.+.+++.+.. ... .|.+..|.++||+++|++++ +++++|++|
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~-------------~~~-~~~p~~g~~~lr~~ia~~~~--------~~~~~i~~t 87 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHL-------------DEL-ALYPDGYAPELRTKVAKHLG--------VDEEQLLFG 87 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHH-------------HHh-hcCCCCcHHHHHHHHHHHhC--------CCHHHEEEC
Confidence 7899999999984 566777766531 222 34445689999999999985 678999999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
+|+++++..++.+++++||.|++++|+|+.|...+... |++++.+|++ ++.+|++.+++.+++ +++++++
T Consensus 88 ~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~~~~~---~~~~d~~~l~~~~~~------~~~~v~i 157 (359)
T PRK03158 88 AGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIE-GAEVREVPLK---DGGHDLEAMLKAIDE------QTKIVWI 157 (359)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEEecC---CCCcCHHHHHHhcCC------CCCEEEE
Confidence 99999999999999999999999999999998888877 9999999986 346889999887754 7889999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
+|||||||.+++.+++.++++.|+ +|++||+||+|.++.+++.. .+.....+ ..+++++++||||+||++
T Consensus 158 ~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~-~~~~~~~~--------~~~~vi~~~S~SK~~g~~ 227 (359)
T PRK03158 158 CNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDY-PDTLPLLE--------KYENLIVLRTFSKAYGLA 227 (359)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCccc-ccHHHHHH--------hcCCEEEEEechHhhcCc
Confidence 999999999999999999988774 69999999999987665432 23333333 347899999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 357 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g 357 (469)
|+|+||++++++ +.+.+......+.++.++|.++.++|++..+ +++.++.++++++.+.+.|.+.|+.+.++ +|
T Consensus 228 GlRiG~~v~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g 301 (359)
T PRK03158 228 ALRVGYGIASEE-LIEKLNIARPPFNTTRIAQYAAIAALEDQAF----LKECVEKNAEGLEQYYAFCKEYGLFYYPS-QT 301 (359)
T ss_pred chhhehhcCCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCeeCCC-cC
Confidence 999999999654 4455555555566899999999999987544 56667778888899999999888887655 45
Q ss_pred EEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 358 LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 358 ~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+|+|++++. +..++++.++ ++||.|+||+.|+. ++++||+++ +++++++++++|+++
T Consensus 302 ~~i~~~~~~--------~~~~~~~~l~-~~gv~v~~g~~f~~--~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 302 NFIFVDTGR--------DANELFEALL-KKGYIVRSGAALGF--PTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred cEEEEECCC--------CHHHHHHHHH-HCCeEEeeCCCCCC--CCeEEEecC--CHHHHHHHHHHHHHh
Confidence 899998852 1335777776 57999999999863 679999998 799999999999876
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=366.48 Aligned_cols=328 Identities=21% Similarity=0.277 Sum_probs=262.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.|+|+++ ++.+.+++.+. .....|++. +..+||+++|++++ +++++|+
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~--------------~~~~~Yp~~-~~~~lr~~ia~~~~--------~~~~~I~ 107 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEALGNM--------------KFPYVYPDP-ESRRLRAALAEDSG--------LESENIL 107 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHhh--------------HhhccCCCC-CHHHHHHHHHHHhC--------cChhhEE
Confidence 458999999999985 46566666542 223468765 67999999999986 6889999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|++++|+|..|...++.. |++++.++.+ .+|.+|++++++++.. +++++|
T Consensus 108 ~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~~~~-----~~~~~v 179 (380)
T PLN03026 108 VGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVN-GAEVIKVPRT--PDFSLDVPRIVEAVET-----HKPKLL 179 (380)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEeecC--CCCCcCHHHHHHHHhc-----cCCcEE
Confidence 9999999999999999999999999999999888877777 9999999985 4578999999988832 278999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.+++++|++.+ ++||+||+|.++.+.+ +...... ..+++++++||||+||
T Consensus 180 ~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~----~~~~~~~--------~~~~viv~~SfSK~~g 243 (380)
T PLN03026 180 FLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE----SRMKWVK--------KYDNLIVLRTFSKRAG 243 (380)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc----chHHHHH--------hCCCEEEEecchHhhc
Confidence 9999999999999999988888753 8999999999865432 2222322 3478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
++|+|+||++++++ +.+.+.+....+.++.++|.++.++|.+.+ ++++.++.++++++.+.+.|++++.....+.
T Consensus 244 laGlRiGy~~~~~~-~i~~l~~~~~~~~~~~~~q~aa~~aL~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~ 318 (380)
T PLN03026 244 LAGLRVGYGAFPLS-IIEYLWRAKQPYNVSVAAEVAACAALSNPK----YLEDVKNALVEERERLFGLLKEVPFLEPYPS 318 (380)
T ss_pred CccccceeeecCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCeECCC
Confidence 99999999999655 445555565556688999999999997744 4677888999999999999998864323566
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+|+|+|++++... +..+++..++ ++||.|+++..++ .++++||+++ ++++++.++++|+++
T Consensus 319 ~~~f~~~~~~~~~------~~~~~~~~l~-~~gI~v~~~~~~~--~~~~lRis~~--~~~~~~~l~~al~~~ 379 (380)
T PLN03026 319 DANFILCRVTSGR------DAKKLKEDLA-KMGVMVRHYNSKE--LKGYIRVSVG--KPEHTDALMEALKQL 379 (380)
T ss_pred CCeEEEEECCCCC------CHHHHHHHHH-HCCeEEEECCCCC--CCCEEEEecC--CHHHHHHHHHHHHHh
Confidence 7799999987421 2335667766 6799999987532 4679999998 678888888888753
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=369.77 Aligned_cols=283 Identities=19% Similarity=0.345 Sum_probs=232.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCCcChHHHHhhhCC
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-EPGEAFLLPTPYYPGFDRDLKWRTG 157 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~~g 157 (469)
...|++..|.++||++||+++++++| +.+++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+... |
T Consensus 100 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~-g 176 (407)
T PLN02368 100 LGAYSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLL-G 176 (407)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHc-C
Confidence 56799999999999999999988766 45789999999999999999999987 79999999999999999999887 9
Q ss_pred CEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 158 VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 158 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
.++++++++++++|.+|++.+++++++...++.++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.
T Consensus 177 ~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 177 GTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 99999999877789999999999987543334478999999999999999999999999999999999999999999988
Q ss_pred cCCC-CccchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEe--cCHHHHHHHHHhc-ccccCcHHHHHHH
Q 043923 238 FSSP-GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYS--NDDMVVAAATKMS-SFGLVSSQTQYLL 312 (469)
Q Consensus 238 ~~~~-~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~--~~~~~~~~~~~~~-~~~~~s~~~q~~~ 312 (469)
|++. .+.++.++..+++. ..+..+++|+++||||+| |+||+|+||+++ .++.+.+.+.+.. ..++++.++|.++
T Consensus 257 y~~~~~~~s~~~~~~~~~~-~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa 335 (407)
T PLN02368 257 YQDERPFISAKKVLMDMGP-PISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFM 335 (407)
T ss_pred cCCCCCcccHHHHHhhhcc-cccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHH
Confidence 8764 45566555321100 000135899999999998 899999999995 2334444444442 3455788999999
Q ss_pred HHHhcCch----hh---HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecc
Q 043923 313 SALLSDKK----FT---QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMR 365 (469)
Q Consensus 313 ~~~l~~~~----~~---~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~ 365 (469)
.++|.... .. .++.++.++.++++++.+.+.|+++ |+++.+|+||||+|++++
T Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 336 GLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred HHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 99997542 11 2333556889999999999999997 999999999999997665
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=360.44 Aligned_cols=327 Identities=16% Similarity=0.256 Sum_probs=260.8
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
+.++|+.|+|+++++.. . ......|+++. ..+||+++|++++ +++++|++|+
T Consensus 32 ~~~~~~~ne~~~~~~~~-----~--------------~~~~~~Y~~~~-~~~lr~~ia~~~~--------~~~~~I~~t~ 83 (364)
T PRK04781 32 GDVWLNANESAWANPAD-----P--------------DASTRRYPDPQ-PPGLRSALAALYG--------CAPEQLLIGR 83 (364)
T ss_pred CCEEeeCCCCCCCCChh-----h--------------cchhccCCCCC-HHHHHHHHHHHhC--------cChHHEEEeC
Confidence 57999999999875421 0 12356798764 6999999999985 6899999999
Q ss_pred ChHHHHHHHHHHhcCCC-CEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 119 GATSANETLMFCLAEPG-EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 119 G~~~al~~~~~~l~~~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+++++..++.+++.+| |.|++++|+|..|...++.. |++++.+|++ .+++|.+|++++.+.+.. +++++|+
T Consensus 84 G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-----~~~~lv~ 157 (364)
T PRK04781 84 GSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQ-NAPLVEVPLVDGADGFHADVPAIVAAALA-----SNAKLVF 157 (364)
T ss_pred CHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEEecCCCccCCCcCHHHHHHHHhc-----cCCeEEE
Confidence 99999999999999999 79999999999888777777 9999999985 345688888888655432 2789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.+++.++++++++.|+ ++++||+||+|.++.+.. +...+.. ..+++++++||||+||+
T Consensus 158 l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~----~~~~~~~--------~~~~vi~~~SfSK~~gl 224 (364)
T PRK04781 158 LCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVP----SAVGLLA--------RYDNLAVLRTLSKAHAL 224 (364)
T ss_pred EcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCc----chHHHHh--------hCCCEEEEecChhhccc
Confidence 9999999999999999999999885 478999999999865321 2333333 44789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~ 355 (469)
||+|+||+++++ .+.+.+.+....+.++++.|.++..+|+++.+ .+..+..+.++++++.+.+.|+++ ++....+.
T Consensus 225 ~GlRvGy~v~~~-~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~ 301 (364)
T PRK04781 225 AAARIGSLIANA-ELIAVLRRCQAPYPVPTPCAALAEQALSAPAL--AVTARRVAEVRAERERLHAALAQLPGVRRVYPS 301 (364)
T ss_pred ccceeeeeeCCH-HHHHHHHhccCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC
Confidence 999999999954 45566666666667889999999999988643 234555567888999999999988 66434456
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
+|+|+|++++. ..++.+.+ +++||.|+||..|.. .++|+||+++ +++++++++++|+++.
T Consensus 302 ~g~f~~~~~~~---------~~~~~~~l-~~~gI~v~~~~~~~~-~~~~~Ris~~--~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 302 QGNFLLVRFDD---------AEAAFQAL-LAAGVVVRDQRAAPR-LSDALRITLG--TPEQNDRVLAALQRTQ 361 (364)
T ss_pred CCcEEEEEcCC---------HHHHHHHH-HHCCeEEeeCCCCCC-CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence 67999999862 12445544 577999999987753 3679999998 6899999999998754
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=361.33 Aligned_cols=346 Identities=24% Similarity=0.412 Sum_probs=277.8
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
..+++|+.+.+.++ ++.+.+++.+..... ......|++..|++++|+++|+++++.++ ..+++++|++
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~---------~~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i~~ 101 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEE---------DPGLHGYMPNAGYPEVREAIAESLNRRFG--TPLTADHIVM 101 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcC---------CcCcccCCCCCCCHHHHHHHHHHHHHHhC--CCCCcCcEEE
Confidence 46799999876554 456666665432110 01246798889999999999999998766 3478999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|++++|+|..+...+... |++++.++++++ +|.+|++++++++++ ++++++
T Consensus 102 t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~-g~~v~~v~~~~~-~~~~d~~~l~~~~~~------~~~~v~ 173 (394)
T PRK06836 102 TCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNH-GGKLVVVPTDTD-TFQPDLDALEAAITP------KTKAVI 173 (394)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEEecCCc-cCcCCHHHHHhhcCc------CceEEE
Confidence 999999999999999999999999999999998888877 999999998753 478999999998865 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHh------cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITE------KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~------~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
+++|+||||.++|.+++++|+++|++ ||++||+||+|.++.|++....++.. ..+++++++||
T Consensus 174 ~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-----------~~~~~i~~~S~ 242 (394)
T PRK06836 174 INSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK-----------YYDNSIVVYSF 242 (394)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH-----------ccCcEEEEecc
Confidence 99999999999999999999999999 89999999999998776543333222 23689999999
Q ss_pred ccccCCCcceEEEEEecCHHHH-----HHHHHhc---ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHH
Q 043923 271 SKDLGLPGFRVGAIYSNDDMVV-----AAATKMS---SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVS 342 (469)
Q Consensus 271 SK~~g~~GlRiG~li~~~~~~~-----~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 342 (469)
||.||+||+|+||+++++.... ....... .++.++.+.|.++..++++.. .++.++++++.+.+
T Consensus 243 SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~r~~l~~ 314 (394)
T PRK06836 243 SKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKRNRDLLYD 314 (394)
T ss_pred hhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHHHHHHHHH
Confidence 9999999999999999654321 1111111 223477889999999987631 24567788899999
Q ss_pred HHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHH
Q 043923 343 GLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 422 (469)
Q Consensus 343 ~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~ 422 (469)
.|+++|+++.++.+|+|+|+.++.. +..++++. +.++||.|+||..|+. ++++||+++ .++++++++++
T Consensus 315 ~L~~~g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~-l~~~gv~v~~g~~f~~--~~~iRi~~~-~~~~~~~~~i~ 383 (394)
T PRK06836 315 GLTELGFECVKPQGAFYLFPKSPEE-------DDVAFCEK-AKKHNLLLVPGSGFGC--PGYFRLSYC-VDTETIERSLP 383 (394)
T ss_pred HHHhCCCEeecCCceEEEEEeCCCC-------CHHHHHHH-HHhCCEEEECchhcCC--CCeEEEEec-CCHHHHHHHHH
Confidence 9999999999999999999988741 23356644 4677999999998863 579999998 59999999999
Q ss_pred HHHHHHHhhc
Q 043923 423 RLKAFVDSIT 432 (469)
Q Consensus 423 ~L~~~l~~~~ 432 (469)
+|+++++++.
T Consensus 384 ~l~~~l~~~~ 393 (394)
T PRK06836 384 AFEKLAKEYK 393 (394)
T ss_pred HHHHHHHHhc
Confidence 9999998764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=364.46 Aligned_cols=321 Identities=18% Similarity=0.300 Sum_probs=259.5
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
+.|+|+.|||+++++.. +.. .....||+.. ..+|++++|++++ +++++|++|+
T Consensus 29 ~~~~l~~Nenp~~~~~~---~~~---------------~~~~~Yp~~~-~~~l~~~~a~~~g--------~~~~~I~~~~ 81 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQ---LTQ---------------QTLNRYPECQ-PKAVIENYAAYAG--------VKPEQVLVSR 81 (351)
T ss_pred CceEecCCCCCCCCChh---hcc---------------cccccCCCCC-hHHHHHHHHHHhC--------CCHHHEEEcC
Confidence 46999999999976521 111 2356798775 4899999999986 7899999999
Q ss_pred ChHHHHHHHHHHhcCCC-CEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 119 GATSANETLMFCLAEPG-EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 119 G~~~al~~~~~~l~~~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
|+++++..++.+++++| |.|+++.|+|..|...++.. |++++.+|+++ +|.+|++++++++. ++++|++
T Consensus 82 Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~-G~~~~~v~~~~--~~~~d~~~l~~~~~-------~~~lv~l 151 (351)
T PRK01688 82 GADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVEIRTVPTLD--NWQLDLPAIADNLD-------GVKVVYV 151 (351)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHc-CCEEEEeecCC--CCCCCHHHHHHhcc-------CCcEEEE
Confidence 99999999999999987 89999999999999888877 99999999863 58899999988762 7899999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
||||||||.+++.+++++|++.|++ +.+||+||+|.++. .. .+...+.. ..+++++++||||+||++
T Consensus 152 ~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~--~s~~~~~~--------~~~n~iv~rSfSK~~gla 218 (351)
T PRK01688 152 CSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFC--PQ--ASLAGWLA--------EYPHLVILRTLSKAFALA 218 (351)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcC--CC--CChHHHHh--------hCCCEEEEecchHhhcCH
Confidence 9999999999999999999999976 67899999999853 22 24444544 447999999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCc
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNA 356 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~ 356 (469)
|+|+||++++++ +.+.+.+....+.++.++|.++.++|.+.. .+++++.++.+.++++++.+.|+++ ++....+.+
T Consensus 219 GlRiGy~i~~~~-~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~ 295 (351)
T PRK01688 219 GLRCGFTLANEE-VINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSE 295 (351)
T ss_pred HHHHhHHhCCHH-HHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCC
Confidence 999999998544 555566666666788888888888887643 3456777888888999999999988 665344556
Q ss_pred eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 357 GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
++|+|++++. ..++.+.|+ ++||.|+++..|.. .++|+||+++ +++++++++++|+
T Consensus 296 ~nfi~~~~~~---------~~~l~~~L~-~~gi~vr~~~~~~~-~~~~iRis~~--~~~e~~~l~~al~ 351 (351)
T PRK01688 296 TNYILARFTA---------SSAVFKSLW-DQGIILRDQNKQPG-LSNCLRITIG--TREECQRVIDALR 351 (351)
T ss_pred CcEEEEEcCC---------HHHHHHHHH-HCCeEEEECCCcCC-CCCeEEEeCC--CHHHHHHHHHhhC
Confidence 7899998862 225666666 66999998765532 3679999998 6899999998873
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=368.27 Aligned_cols=357 Identities=18% Similarity=0.247 Sum_probs=264.8
Q ss_pred CCeeeeecccccc-C--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 38 TGIIQMGLAENQL-S--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
.++|+|+.+.+.. + .+.+.+++++..... ........|++..|.++||++||+++++++| +.+++++|
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~v~~~~I 100 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASG-------KLTEALGNYDGPQGKDELIEALAALLNERYG--WNISPQNI 100 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCc-------ccccccccCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhE
Confidence 4789999887654 2 234555554421110 0012346799999999999999999988776 45789999
Q ss_pred EEeCChHHHHHHHHHHhcC-----CCCEEEE-ccCCCcChHHHHhhhCC----CEEEEeeccCC-CCcccCHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLAE-----PGEAFLL-PTPYYPGFDRDLKWRTG----VEIVPIQCTSL-NGFQITETAIEEAYQ 183 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~-----~gd~Vl~-~~P~y~~~~~~~~~~~g----~~~~~v~~~~~-~~~~~d~~~l~~~i~ 183 (469)
++|+|+++++.+++.++++ +||.|++ ++|+|+.|...+... | .....++++.+ .+|.+|++.++ +.
T Consensus 101 ~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~ 177 (416)
T PRK09440 101 ALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEE-DLFVSYRPNIELLPEGQFKYHVDFEHLH--ID 177 (416)
T ss_pred EEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhcc-CceeecccccccccccccccCCCHHHcc--cC
Confidence 9999999999999999985 6899999 799999998755432 2 21222233321 14778988887 22
Q ss_pred HHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCe
Q 043923 184 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263 (469)
Q Consensus 184 ~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (469)
.++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++ +....+ ....+. ..++
T Consensus 178 ------~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~---~~~~~~-------~~~~ 240 (416)
T PRK09440 178 ------EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIF---SEATPL-------WNPN 240 (416)
T ss_pred ------CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcch---hhcCcc-------ccCC
Confidence 27899999999999999999999999999999999999999999753 111111 111110 2478
Q ss_pred EEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHH-HHHHHHHHHHHH
Q 043923 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISE-NKKRLKQRHRKL 340 (469)
Q Consensus 264 ~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~l 340 (469)
+|+++||||+ ++||+|+||++++++ +.+.+...... .+++.+.|.++..++.++.+ .++..+ .+..++++++.+
T Consensus 241 vI~~~SfSK~-~~pGlRiG~~i~~~~-l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~ 317 (416)
T PRK09440 241 IILCMSLSKL-GLPGVRCGIVIADEE-IIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLA 317 (416)
T ss_pred eEEEeccccc-CCCcceEEEEeCCHH-HHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999996 899999999999655 44444444322 34788999999999998877 555544 677888888888
Q ss_pred HHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-------CCCeEEEEe
Q 043923 341 VSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-------EPGWFRVCF 409 (469)
Q Consensus 341 ~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-------~~~~iRi~~ 409 (469)
.+.|++. ++.+..|++|+|+|++++... .++.+++..+ .++||.|.||+.|+.. ..+++||++
T Consensus 318 ~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~-----~~~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~ 391 (416)
T PRK09440 318 IALLRRYLPDEPCLIHKPEGAIFLWLWFKDLP-----ITTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNY 391 (416)
T ss_pred HHHHHHhcccCCeEEecCCCceEEEEECCCCC-----CCHHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEe
Confidence 8888764 456678899999999998521 1223566654 5779999999988642 135999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 410 ANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 410 ~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+. +++++++++++|++++++..+
T Consensus 392 ~~-~~~~l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 392 VQ-DDEEIEKGIAILAEEVEKAYA 414 (416)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHhh
Confidence 85 899999999999999987554
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=360.39 Aligned_cols=328 Identities=20% Similarity=0.243 Sum_probs=258.2
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhHcCCCCC-CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHh-hh
Q 043923 78 ELALFQDYHGLPAFKKALVEFMSEIRGNKVT-FDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLK-WR 155 (469)
Q Consensus 78 ~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~-~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-~~ 155 (469)
....|+++.|.++||+++++++.+..+ ... .+.++|++|+|+++++..++.+++++||.|++++|+|+.|...+. ..
T Consensus 36 ~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~ 114 (388)
T PRK08637 36 EIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRR 114 (388)
T ss_pred cccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhc
Confidence 456899999999999999999875432 111 123689999999999999999999999999999999999998764 45
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh-----cCeEEEEe
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE-----KNIHLISD 230 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~-----~~~~iI~D 230 (469)
|++++.+|+.. +++.+|+++++++++... .+...+++++|||||||.+++.+++++|+++|++ |+++||+|
T Consensus 115 -g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~--~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~D 190 (388)
T PRK08637 115 -GAEIVTYPIFD-EDGGFDTDALKEALQAAY--NKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVD 190 (388)
T ss_pred -CCEEEEecccC-CCCcCCHHHHHHHHHhhc--cCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 99999999842 234579999998886210 1145567889999999999999999999999875 89999999
Q ss_pred ccccccccCCCCccchhhhhhccccccCCcCCeE--EEEccCccccCCCcceEEEEEecC-----HHHHHHHHH-h----
Q 043923 231 EIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV--HIVYSLSKDLGLPGFRVGAIYSND-----DMVVAAATK-M---- 298 (469)
Q Consensus 231 eay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--i~i~S~SK~~g~~GlRiG~li~~~-----~~~~~~~~~-~---- 298 (469)
|+|.++.|++....++.....+ ..+++ ++++|+||.|++||+|+||++++. +.+.+.+.. .
T Consensus 191 e~Y~~l~~~~~~~~~~~~~~~~-------~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (388)
T PRK08637 191 DAYFGLFYEDSYKESLFAALAN-------LHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLI 263 (388)
T ss_pred ccchhcccCCccchhhHHHhhc-------ccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHh
Confidence 9999988776544443222111 33564 455799999999999999999753 444444332 1
Q ss_pred -cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCCh
Q 043923 299 -SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTF 373 (469)
Q Consensus 299 -~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~ 373 (469)
...+.+|.+.|.++..+++++.+ .+++++.+..++++++.+.+.|++. ++.+.++++|+|+|++++.
T Consensus 264 ~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~------- 335 (388)
T PRK08637 264 RSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG------- 335 (388)
T ss_pred hcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh-------
Confidence 12345789999999999998776 6777778888999999999988765 5788889999999999973
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+..++++++++++||.+.+. +++++||+++..+++++++++++|+++++.+
T Consensus 336 ~~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 336 VDAEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred HHHHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 124468888887889988742 2568999999778999999999999999754
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=360.28 Aligned_cols=326 Identities=17% Similarity=0.239 Sum_probs=261.5
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
+++|+|+.|+|+++ ++.+.+++.+. ......|++.. .++||++||++++ +++++|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~-------------~~~~~~Y~~~~-~~~Lr~aia~~~~--------v~~e~I~i 100 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARS-------------AALSGRYDLEL-EDDLRTLFAAQEG--------LPADHVMA 100 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHH-------------HHHhcCCCCch-HHHHHHHHHHHhC--------cChhhEEE
Confidence 57899999999985 56666666553 12234688664 8999999999875 68999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|++++|+|..|...++.. |++++.+|++. +|.+|++++++.. +++++++
T Consensus 101 t~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~-------~~~~~v~ 170 (370)
T PRK09105 101 YAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQ-GAPVAKVPLRA--DGAHDVKAMLAAD-------PNAGLIY 170 (370)
T ss_pred cCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHhcC-------CCCCEEE
Confidence 999999999999999999999999999999999888887 99999999864 5778988887652 2688999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+||||||||.+++.++++++++.|+ ++++||+||+|.++ ... .+..++.+ ..+++++++||||+||+
T Consensus 171 l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f--~~~--~s~~~~~~--------~~~~vi~~~SfSK~~g~ 237 (370)
T PRK09105 171 ICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHF--SDA--PSVVDLVA--------QRKDLIVLRTFSKLYGM 237 (370)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHh--ccC--cchHHHHh--------hCCCEEEEecccHhhcC
Confidence 9999999999999999999999764 59999999999864 322 24444433 34789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 356 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~ 356 (469)
+|+|+||+++++. +.+.+... ..+.++.+.|.++.++|.+. +++++.++.++++++.+.+.|+++|+++.++++
T Consensus 238 ~GlRiG~~v~~~~-~i~~l~~~-~~~~~~~~~~~aa~~~L~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~ 311 (370)
T PRK09105 238 AGMRLGLAAARPD-LLAKLARF-GHNPLPVPAAAAGLASLRDP----KLVPQRRAENAAVREDTIAWLKKKGYKCTPSQA 311 (370)
T ss_pred CccceeeeecCHH-HHHHHHhc-CCCCcCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCC
Confidence 9999999999654 44444444 34447788888888888764 357788889999999999999999999888888
Q ss_pred eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 357 GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+|| +++++. +..++++.+++ +||.| |..|. ..++|+||+++ +++++++++++|+++++
T Consensus 312 ~f~-~~~~~~--------~~~~l~~~L~~-~gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~al~~~~~ 369 (370)
T PRK09105 312 NCF-MVDVKR--------PAKAVADAMAK-QGVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRSAFAKVMR 369 (370)
T ss_pred cEE-EEeCCC--------CHHHHHHHHHH-CCcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHHhh
Confidence 766 577751 13467777775 59998 34453 24689999998 68889999999988763
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=355.59 Aligned_cols=325 Identities=19% Similarity=0.259 Sum_probs=259.2
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|||+.|+|+++ ++.+.+++.+.. .....|++..|.++||+++|++++ +++++|+
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~g~~~lr~aia~~~~--------~~~~~I~ 79 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARL-------------GDLAAYPSTEDERRARAAVAARHG--------RTPDEVL 79 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHh-------------hHhhcCCCccchHHHHHHHHHHhC--------cChhhEE
Confidence 457999999999885 566777776631 235679988899999999999985 6899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++.+++. + .+| .++++.|+|..+...++.. |++++.+|++. +|.+|++.++ + +++++
T Consensus 80 it~Ga~~al~~~~~-l-~~~-~viv~~P~y~~~~~~~~~~-G~~i~~v~~~~--~~~~d~~~l~----~------~~~~i 143 (349)
T PRK07908 80 LLAGAAEGFALLAR-L-RPR-RAAVVHPSFTEPEAALRAA-GIPVHRVVLDP--PFRLDPAAVP----D------DADLV 143 (349)
T ss_pred ECCCHHHHHHHHHh-c-CCC-eEEEeCCCChHHHHHHHHc-CCEEEeeccCc--ccCcChhHhc----c------CCCEE
Confidence 99999999999988 4 665 5778899999998888877 99999999874 3778877542 2 67899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.++|.+++.+ +|+ ++.++|+||+|.+++. +. ..++.+. ..+++++++||||.||
T Consensus 144 ~l~np~NPTG~~~~~~~l~~---l~~-~~~~iIvDe~y~~~~~-~~-~~~l~~~----------~~~~~i~i~S~SK~~~ 207 (349)
T PRK07908 144 VIGNPTNPTSVLHPAEQLLA---LRR-PGRILVVDEAFADAVP-GE-PESLAGD----------DLPGVLVLRSLTKTWS 207 (349)
T ss_pred EEcCCCCCCCCCcCHHHHHH---HHh-cCCEEEEECcchhhcc-CC-ccccccc----------cCCCEEEEeecccccC
Confidence 99999999999999887554 454 4778888999998643 22 2343332 3367999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
++|+|+||++++++ +.+.+......+.++++.+.++.+++.+.. .+++++.++.++++++++.+.|+++++++.++.
T Consensus 208 l~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~ 284 (349)
T PRK07908 208 LAGLRVGYALGAPD-VLARLTRGRAHWPVGTLQLEAIAACCAPRA--VAEAAADAARLAADRAEMVAGLRAVGARVVDPA 284 (349)
T ss_pred CccceeeeeecCHH-HHHHHHhcCCCCCccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCC
Confidence 99999999999654 444455454456677888888888877432 456788899999999999999998888888888
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+|+|+|++++. . +.+...++++||.|.||..|+...++++||+++ +++++++++++|++++.
T Consensus 285 ~g~~~~~~~~~---------~-~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 285 AAPFVLVRVPD---------A-ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK 346 (349)
T ss_pred CceEEEEECCc---------H-HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence 89999999874 1 234455678899999999986545789999997 68899999999988764
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=359.93 Aligned_cols=338 Identities=19% Similarity=0.252 Sum_probs=268.3
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
..|+|+.|+|+++ ++.+.+++++..... ......|++ .|.++||+++|+|++++++ +++++++|++|
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~---------~~~~~~Y~~-~g~~~lr~aia~~~~~~~~--~~~~~~~I~it 94 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEA---------AAGLNRYPD-RDAVALRADLAAYLTAQTG--VGLTVENVWAA 94 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhh---------hhhhccCCC-CchHHHHHHHHHHhhhhcc--CCCChhhEEEC
Confidence 4699999999995 566777776531100 023567876 4889999999999988776 45789999999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
+|+++++..++++++++||.|+++.|+|..|...+... |.+++.++.+ ++|.+|++++++++++. +++++++
T Consensus 95 ~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~~-----~~~~i~l 166 (368)
T PRK03317 95 NGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGT-HTEWVEGPRA--ADFTLDVDAAVAAIAEH-----RPDVVFL 166 (368)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhc-CCeeEEcccC--CCCCCCHHHHHHHHhcc-----CCCEEEE
Confidence 99999999999999999999999999999999888876 9999988865 46789999999988642 6788999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
+||+||||.+++.+++++|+++| +++||+||+|.++.+.+. .+...+.+ ..+++++++||||+||++
T Consensus 167 ~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~--~~~~~~~~--------~~~~~i~~~SfSK~~g~~ 233 (368)
T PRK03317 167 TSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT--PSALTLLP--------EYPRLVVSRTMSKAFAFA 233 (368)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC--cCHHHHHH--------hCCCEEEEEechhhhccc
Confidence 99999999999999988888866 689999999998654442 23344433 336899999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 357 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g 357 (469)
|+|+||+++++ .+.+.+......+.+++++|.++.++|++.+. +.+.++++.++++.+.+.|++.|+++.++.++
T Consensus 234 GlRiG~~~~~~-~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 308 (368)
T PRK03317 234 GGRLGYLAAAP-AVVDALRLVRLPYHLSAVTQAAARAALRHADE----LLASVAALRAERDRVVAWLRELGLRVAPSDAN 308 (368)
T ss_pred hhhhhhhhCCH-HHHHHHHhcCCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCc
Confidence 99999999954 45555555554556889999999999976432 33455667888899999999999988888898
Q ss_pred EEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 358 LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 358 ~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+++|.+++. ..++++.++ ++||.|.++. .++++|++++ +++++++++++|+++++..
T Consensus 309 ~~~~~~~~~---------~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~--~~~~~~~~~~~l~~~~~~~ 365 (368)
T PRK03317 309 FVLFGRFAD---------RHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG--TPEENDAFLAALAEVLATE 365 (368)
T ss_pred EEEEeccCC---------HHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 888866531 224555554 6799998642 2579999997 6889999999999988654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=358.77 Aligned_cols=334 Identities=18% Similarity=0.208 Sum_probs=266.3
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
.+|+|+.|+|+++ ++.+.+++.+. ......|++. +.++||++||++++ +++++|++|
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~-------------~~~~~~Y~~~-~~~~Lr~~ia~~~~--------~~~~~I~it 90 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREA-------------AAEIWKYGDP-ENHDLRHALAAHHG--------VAPENIMVG 90 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHH-------------HHHhhcCCCC-ccHHHHHHHHHHhC--------CCHHHEEEc
Confidence 5689999999986 45666666653 1234578876 47999999999985 688999999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.+|++.+ .+|++++.+.+.. .+++++++
T Consensus 91 ~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~vp~~~~---~~~~~~l~~~~~~-----~~~~~i~l 161 (369)
T PRK08153 91 EGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGF-GGRLVTVPYRDD---REDLDALLDAARR-----ENAPLVYL 161 (369)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHHc-CCeEEEeeCCCC---CCCHHHHHHHhcc-----cCCcEEEE
Confidence 99999999999999999999999999999999888877 999999998643 3678888766542 27889999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
+|||||||.++|.+++++++++|+ ++++||+||+|.++.+++. ..+ +.. ..+++++++||||+||+|
T Consensus 162 ~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~---~~~--------~~~~~i~~~SfSK~~g~~ 228 (369)
T PRK08153 162 ANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA-APP---IDT--------DDPNVIRMRTFSKAYGLA 228 (369)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc-chh---hhh--------cCCCEEEEecchHhccCc
Confidence 999999999999999999999887 4999999999998655432 122 222 236899999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 357 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g 357 (469)
|+|+||++++++ +.+.+.+....++++++.|.++.++|++.. ++++.++.++++++.+.+.|++.|+.+. +.++
T Consensus 229 GlRiG~~v~~~~-~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~ 302 (369)
T PRK08153 229 GARVGYAIGAPG-TIKAFDKVRNHFGMNRIAQAAALAALKDQA----YLAEVVGKIAAARDRIAAIARANGLTPL-PSAT 302 (369)
T ss_pred chheeeeecCHH-HHHHHHHhhcCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCccC-CCcC
Confidence 999999999654 445555555556689999999999997644 4677888899999999999998888755 4667
Q ss_pred EEEEEecccccccCChhHHHHHHHHHHHhCCeEEe-CCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 358 LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS-PGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 358 ~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~-pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+|+|++++... ....+++++++ ++||.++ |+... .++++||+++ ++++++.++++|+++++..++
T Consensus 303 ~f~~~~~~~~~-----~~a~~l~~~l~-~~Gi~v~~p~~~~---~~~~iRis~~--~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 303 NFVAIDCGRDG-----AFARAVLDGLI-ARDIFVRMPGVAP---LDRCIRVSCG--PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred cEEEEECCCCc-----ccHHHHHHHHH-HCCeEEeeCCCCC---CCCeEEEecC--CHHHHHHHHHHHHHHHHHhhc
Confidence 99999886210 12335666665 5699995 65421 3569999998 699999999999999986665
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=357.84 Aligned_cols=329 Identities=20% Similarity=0.273 Sum_probs=263.9
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i 114 (469)
+.++|+|+.|+|+++ ++.+.+++.+.... .....|++ .|.++||+++|++++ +.+ ++|
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~~I 84 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAE-----------VALNRYPD-PRAAALKAALRAAMG--------VPAGADV 84 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhc-----------cccccCCC-CCHHHHHHHHHHHhC--------cCCCCcE
Confidence 468999999999985 56677777653110 23567987 577999999999996 333 589
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||+|+++.|+|..|...++.. |++++.+|++ .+|.+|++++++++.+. ++++
T Consensus 85 ~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~--~~~~~d~~~l~~~~~~~-----~~~~ 156 (356)
T PRK04870 85 LLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLA-GLEFVGVPLT--ADFTLDLPAMLAAIAEH-----RPAL 156 (356)
T ss_pred EEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHc-CCEEEEecCC--CCCCCCHHHHHHHhhcC-----CCCE
Confidence 99999999999999999999999999999999999888877 9999999987 35789999999988632 7899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|+++|||||||.+++.+++++|+++| +.++|+||+|.++.+ ... ..... ..+++++++|||| +
T Consensus 157 v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~--~~~---~~~~~--------~~~~vi~~~S~SK-~ 219 (356)
T PRK04870 157 VFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAG--DSW---LPRLA--------RFPNLLVMRTVSK-L 219 (356)
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcC--cch---HHHHh--------hCCCEEEEecchh-h
Confidence 99999999999999999999999988 678999999987532 211 11122 3468999999999 8
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
|+||+|+||+++++. +.+.+......+.++.+.|.++..++++.+ ++++.++.++++++.+.+.|+++ |+.+.+
T Consensus 220 ~~~GlRiG~~i~~~~-~i~~~~~~~~~~~~~~~~q~~a~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 294 (356)
T PRK04870 220 GLAGLRLGYLAGHPA-WIAELDKVRPPYNVNVLTQATALFALEHVD----VLDAQAAQLRAERTRLAAALAALPGVTVFP 294 (356)
T ss_pred hhHHHhhhhhhCCHH-HHHHHHHccCCCcCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHhCCCcEECC
Confidence 999999999999654 444455555556688899999888887643 36777788889999999999988 887654
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
.+|+|+|++++. ..+++. .++++||.|+||..|+...++++||+++ +.+++++++++|.+++
T Consensus 295 -~~~~~~~~~~~~---------~~~~~~-~l~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 295 -SAANFILVRVPD---------AAAVFD-GLKTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAAL 356 (356)
T ss_pred -CCCeEEEEECCC---------HHHHHH-HHHHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHhC
Confidence 556899999872 124454 4567899999999987656789999998 6899999999998753
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=359.17 Aligned_cols=315 Identities=17% Similarity=0.252 Sum_probs=244.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc-----EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK-----IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLK 153 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~-----i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~ 153 (469)
...|++..|.++||+++++++.+.... ..++++ +++++|+.+ +...+..++.|||+|++++|+|+.|...++
T Consensus 84 ~~~Y~~~~G~~~LR~aia~~~~~~~~~--~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~ 160 (423)
T PLN02397 84 NKEYLPIEGLAEFNKLSAKLAYGADSP--AIKENRVATVQCLSGTGSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIFR 160 (423)
T ss_pred CCCCCCcCCCHHHHHHHHHHHcCCCCc--hhhcCeeEeeecccchHHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHHH
Confidence 457999999999999999998644321 122233 334454443 334444555799999999999999999999
Q ss_pred hhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc
Q 043923 154 WRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233 (469)
Q Consensus 154 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay 233 (469)
.. |++++.+|+...++|.+|++.+++.+.+. .++++++++++||||||.+++.+++++|+++|++||++||+||+|
T Consensus 161 ~~-g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y 236 (423)
T PLN02397 161 DA-GVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAY 236 (423)
T ss_pred Hc-CCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc
Confidence 88 99999999843345889999998887632 236788899999999999999999999999999999999999999
Q ss_pred cccccCCC--CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEE--ecCHHHH----HHHHHhc--cccc
Q 043923 234 SGTVFSSP--GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIY--SNDDMVV----AAATKMS--SFGL 303 (469)
Q Consensus 234 ~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li--~~~~~~~----~~~~~~~--~~~~ 303 (469)
.++.|++. .+.++..+.. ..+++|+++||||+|+++|+|+||++ +++..+. +.+.... ...+
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~--------~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (423)
T PLN02397 237 QGFASGDLDADAQSVRMFVE--------DGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSN 308 (423)
T ss_pred CCccCCchhhhhHHHHHHHh--------cCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence 99877541 2334433322 23579999999999999999999995 4343322 2222222 2334
Q ss_pred CcHHHHHHHHHHhcCchhhHHH---HHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHH
Q 043923 304 VSSQTQYLLSALLSDKKFTQNY---ISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~ 376 (469)
++.+.|.++..+|+++.+.+.+ +++.++.++++++.+.+.|+++| +++..|++|||+|++++.
T Consensus 309 ~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~---------- 378 (423)
T PLN02397 309 PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNK---------- 378 (423)
T ss_pred CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCCH----------
Confidence 6778999999999886543333 67888999999999999999987 788889999999998852
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+++.+|++++||.+.+ .+ |++++.++++.+++++++|+++++
T Consensus 379 -~~~~~Ll~~~~V~v~~--------~~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 379 -EQVDRMTKEYHIYMTR--------DG--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred -HHHHHHHHhCCEEECC--------CC--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 4788999999999972 22 999987899999999999999984
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=354.03 Aligned_cols=347 Identities=18% Similarity=0.300 Sum_probs=273.4
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|+|+.++|+++ ++.+.+++.+.... .....|++..|.++||+++|++++ +++++|+
T Consensus 27 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~--------~~~~~v~ 87 (380)
T PRK06225 27 DKEMIWMGQNTNHLGPHEEVREAMIRCIEE-----------GEYCKYPPPEGFPELRELILKDLG--------LDDDEAL 87 (380)
T ss_pred cCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCcchHHHHHHHHHhcC--------CCCCcEE
Confidence 457899999999986 46666666653211 123568888899999999999985 6788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+|+++++..++.+++.+||.|++++|+|..+...+... |++++.++++ ..++|.+|++.+++.+++ ++++
T Consensus 88 ~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~ 160 (380)
T PRK06225 88 ITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRF-GAEVIEVPIYSEECNYKLTPELVKENMDE------NTRL 160 (380)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHh-CceEEeeccccccCCccCCHHHHHhhcCC------CceE
Confidence 9999999999999999999999999999999888778777 9999999974 344688999999988764 7889
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++++||+||||.++|.+++++|+++|+++|+++|+||+|.++..+ . .....+ ..++++++.||||.|
T Consensus 161 v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~--~~~~~~----------~~~~~i~~~s~SK~~ 227 (380)
T PRK06225 161 IYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFARE-H--TLAAEY----------APEHTVTSYSFSKIF 227 (380)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhcc-C--Cchhhc----------CCCCEEEEeechhhc
Confidence 999999999999999999999999999999999999999875322 1 222222 336889999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCce-
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISC- 351 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v- 351 (469)
|++|+|+||++++++ +.+.+.... ...+.+.++|.++..++... .++.++.++.++++++.+.+.|+++ |+.+
T Consensus 228 g~~G~RiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 303 (380)
T PRK06225 228 GMAGLRIGAVVATPD-LIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLP 303 (380)
T ss_pred CCccceeEEEecCHH-HHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCcCCccc
Confidence 999999999999655 444444332 23447788888888888653 3456667777788888888999875 5432
Q ss_pred ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 352 LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
..+.+|+|+|++++... .+..++...+. ++||.++||..|+.. +++++|++++. +++++++++++|++++++
T Consensus 304 ~~~~~g~~~~~~~~~~~-----~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~~~ 376 (380)
T PRK06225 304 VYPSHGNMMVIDISEAG-----IDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVVET 376 (380)
T ss_pred cCCCCCeEEEEEccccc-----CCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHHHH
Confidence 23456788999986421 12345666666 679999999876542 46799999985 899999999999999998
Q ss_pred hcc
Q 043923 431 ITT 433 (469)
Q Consensus 431 ~~~ 433 (469)
.+.
T Consensus 377 ~~~ 379 (380)
T PRK06225 377 LRT 379 (380)
T ss_pred hhc
Confidence 775
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=353.91 Aligned_cols=334 Identities=20% Similarity=0.280 Sum_probs=269.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|||+.|+|+++ ++.+.+++.+.. .....|++..+ .+||+++|++++ +++++|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 88 (367)
T PRK02731 31 IADIIKLASNENPLGPSPKAIEAIRAAA-------------DELHRYPDGSG-FELKAALAEKFG--------VDPERII 88 (367)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHH-------------HhhcCCCCCcH-HHHHHHHHHHhC--------cCHHHEE
Confidence 457899999999885 455666666531 23457887654 899999999985 6789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|++++|+|..+...+... |++++.+|++ ++.+|++.+++.+++ ++++|
T Consensus 89 ~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~---~~~~~~~~l~~~~~~------~~~~v 158 (367)
T PRK02731 89 LGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAV-GAKPVEVPAK---DYGHDLDAMLAAVTP------RTRLV 158 (367)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHc-CCeEEEeccc---CCCCCHHHHHHHhCC------CCcEE
Confidence 9999999999999999999999999999999888777766 9999999874 467899999988764 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.++++++++.|+ +++++|+||+|.++.+.+....++ ...+ ..+++++++||||.||
T Consensus 159 ~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~-~~~~--------~~~~~i~~~S~SK~~g 228 (367)
T PRK02731 159 FIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGL-ELVA--------KFPNVVVTRTFSKAYG 228 (367)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHH-HHHh--------hcCCEEEEeeehHhhc
Confidence 99999999999999999999999875 699999999999876654332232 3332 3468999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
++|+|+||++++++ +.+.+.+....+..+.++|.++.+++++.. ++++.++.++++++.+.+.|++.|+.+.+ .
T Consensus 229 ~~G~RiG~l~~~~~-~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~ 302 (367)
T PRK02731 229 LAGLRVGYGIAPPE-IIDALNRVRQPFNVNSLALAAAVAALDDDA----FVEKSRALNAEGMAWLTEFLAELGLEYIP-S 302 (367)
T ss_pred CcccceeeeeCCHH-HHHHHHHccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCccCC-C
Confidence 99999999999654 555555555455578899999999998643 46777888889999999999998988775 4
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+|+|+|++++... +..++++.|. ++||.|+++..|+ .++++|++++ +.+++++++++|+++++
T Consensus 303 ~g~~~~i~~~~~~------~~~~~~~~L~-~~gI~v~~~~~~~--~~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 303 VGNFILVDFDDGK------DAAEAYQALL-KRGVIVRPVAGYG--LPNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred CceEEEEECCCCC------CHHHHHHHHH-HCCEEEEeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 5689999985422 2335666665 6799999998875 3679999997 68899999999999874
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=352.88 Aligned_cols=325 Identities=16% Similarity=0.290 Sum_probs=257.4
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|+|+++ ++.+.+++.+... .....|++. |.++||+++|++++ +++++|++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~------------~~~~~y~~~-~~~~lr~aia~~~~--------~~~~~I~i 82 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALG------------DDLRLYPDP-NADALRQAIAAYYG--------LDPEQVFV 82 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhh------------hhhhcCCCC-cHHHHHHHHHHHhC--------CCHHHEEE
Confidence 57899999999986 5677777765311 234678766 56999999999985 68999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++++++++||.|++++|+|+.|...++.. |++++.+|++ .+|.+|++++++ .+++++
T Consensus 83 t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~----------~~~~v~ 149 (353)
T PRK05387 83 GNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAGLY-GIPYEEIPLD--DDFSIDVEDYLR----------PNGGII 149 (353)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHc-CCEEEEeecC--CCCCCCHHHHHh----------cCCEEE
Confidence 999999999999999999999999999999888877777 9999999986 357789888763 457889
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.++|.+++++|++.++ ++++|+||+|.+ |.+.. ...+.. ..+++++++||||+||+
T Consensus 150 ~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~--~~~~~---~~~~~~--------~~~~~i~~~S~SK~~~~ 214 (353)
T PRK05387 150 FPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVD--FGGES---AIPLID--------RYPNLLVVQTFSKSRSL 214 (353)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccc--cCCcc---hHHHHh--------hCCCEEEEEehhHhhcc
Confidence 9999999999999999999988653 899999999986 44332 222222 33679999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcc---cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSS---FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+|+|+||++++++ +.+.+..... .++++.+.|.++.+++.+.++ .++.++++.++++.+.+.|+++|+++.+
T Consensus 215 ~GlR~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 289 (353)
T PRK05387 215 AGLRVGFAIGHPE-LIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAY----FEETRAKVIATRERLVEELEALGFEVLP 289 (353)
T ss_pred hhhhceeeecCHH-HHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCeECC
Confidence 9999999999544 4444444432 245788999999999976544 5677888899999999999999987654
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+|+|+|++++.. +..++++.+. ++||.|++... ...++++||+++ +++++++++++|++++.
T Consensus 290 -~~~~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~~~~--~~~~~~iRis~~--~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 290 -SKANFVFARHPSH-------DAAELAAKLR-ERGIIVRHFNK--PRIDQFLRITIG--TDEEMEALVDALKEILA 352 (353)
T ss_pred -CcCcEEEEECCCC-------CHHHHHHHHH-HCCEEEEECCC--CCCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence 5668999998731 2335666664 67999985321 123679999998 67999999999998764
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=350.27 Aligned_cols=315 Identities=17% Similarity=0.232 Sum_probs=247.7
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC-CCCcEE
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF-DTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~-~~~~i~ 115 (469)
+.++||||.|+||++++... +. ...+..||+. . .+|++++|++++ + ++++|+
T Consensus 23 ~~~~i~ls~Nenp~~~~~~~--~~---------------~~~~~~Yp~~-~-~~L~~~ia~~~~--------~~~~~~I~ 75 (339)
T PRK06959 23 YDAWLDLSTGINPHGYPVPP--VP---------------ADAWRRLPED-D-DGLAACAARYYG--------APDAAHVL 75 (339)
T ss_pred hhhhceeccCCCCCCCCCCC--CC---------------HHHHHhCCCc-h-HHHHHHHHHHhC--------CCCcccEE
Confidence 45789999999999754100 00 0234569865 3 899999999996 4 368999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|++++|..+.. ++++|| |+++.|+|+.|...++.. |++++.++.+. +.+. + .++++
T Consensus 76 i~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~-g~~~~~v~~~~--------~~~~----~------~~~~v 134 (339)
T PRK06959 76 PVAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFARH-GHRVVPLDEAA--------DTLP----A------ALTHL 134 (339)
T ss_pred ECcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHC-CCEEEeecccc--------hhcc----c------cCCEE
Confidence 99999999997765 567887 889999999999999887 99999988642 1121 1 45689
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++||||||||.+++.+++++|++.|++++.++|+||+|.++.+. .++..+. ..+++++++||||+||
T Consensus 135 ~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~---------~~~~vi~l~SfSK~~g 201 (339)
T PRK06959 135 IVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHT---------DRPGLVVLRSVGKFFG 201 (339)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhcc---------CCCCEEEEecChhhcC
Confidence 99999999999999999999999999999999999999985322 2333331 2367999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
+||+|+||+++++ .+.+.+.+....+.++.++|.++.++|++.++ .++.++.++++++++.+.|+++|+++. .
T Consensus 202 l~GlRiGy~v~~~-~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~--~ 274 (339)
T PRK06959 202 LAGVRAGFVLAAP-ALLAALRDALGAWTVSGPARHAVRAAFADAAW----QAAMRERLAADGARLAALLRAHGFAVH--A 274 (339)
T ss_pred CcchheEEEecCH-HHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHHHHHHHCCCCcc--C
Confidence 9999999999964 45566666666666899999999999987655 567789999999999999999988765 3
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcccc
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTL 435 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~~~ 435 (469)
+++|+|++++. ..++.+.++ ++||.|++ |+ ..+++||+++. +++++++++++|+++++....++
T Consensus 275 ~~~f~~~~~~~---------~~~l~~~l~-~~GI~vr~---~~--~~~~lRisi~~-~~~e~~~l~~al~~~~~~~~~~~ 338 (339)
T PRK06959 275 TPLFSWTDDPR---------AAALHAALA-RRGIWTRY---FA--PPPSVRFGLPA-DEAEWQRLEDALAECVPTLAAAS 338 (339)
T ss_pred cceEEEEeCCC---------HHHHHHHHH-hCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHHHHhhcc
Confidence 56999998752 124566655 66999984 32 24699999953 78899999999999888776643
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=351.21 Aligned_cols=319 Identities=19% Similarity=0.293 Sum_probs=253.8
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
.++|+|+.|+|+++++.. + . ......||+. +..+||+++|++++ +++++|++|
T Consensus 31 ~~~~~l~~ne~~~~~~~~---~-~--------------~~~~~~Yp~~-~~~~Lr~aia~~~~--------~~~~~I~it 83 (354)
T PRK04635 31 RGDIWINANESPFNNEYK---L-D--------------LARLNRYPEC-QPPELINAYSAYAG--------VAPEQILTS 83 (354)
T ss_pred CCcEEeeCCCCCCCCChh---h-h--------------hHHhccCCCC-CHHHHHHHHHHHhC--------cCHHHEEEe
Confidence 356999999999976521 1 1 1345679887 47999999999885 789999999
Q ss_pred CChHHHHHHHHHHhcCCC-CEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 118 AGATSANETLMFCLAEPG-EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+|++++|..++.+++++| |.|+++.|+|..|...++.. |++++.+|++. +|.+|++.++ .+ + ++++|+
T Consensus 84 ~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~-g~~v~~v~~~~--~~~~~~~~l~-~~-~------~~~li~ 152 (354)
T PRK04635 84 RGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETF-NVGVKALPLTA--DYQLPLDYIE-QL-D------GAKLVF 152 (354)
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEEecCC--CCCCCHHHHH-hc-c------CCCEEE
Confidence 999999999999999999 89999999999998888777 99999999863 5778888876 22 2 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+||||||||.+++.+++++|++.|+ +++||+||+|.++. .. .+..++.. ..+++++++||||+||+
T Consensus 153 i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~--~~--~s~~~~~~--------~~~~~iv~~S~SK~~~l 218 (354)
T PRK04635 153 ICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFC--PE--YSVADLLA--------SYPNLVVLRTLSKAFAL 218 (354)
T ss_pred EeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhc--cC--cchHHHHh--------hCCCEEEEechHHHhhh
Confidence 9999999999999999999999876 49999999999853 22 23344433 34789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~ 355 (469)
+|+|+||++++++ +.+.+......++++.+.|.++.++|.+.. .+++++.++.++++++.+.+.|++++ +++.++.
T Consensus 219 ~GlRlG~~i~~~~-~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~ 295 (354)
T PRK04635 219 AGARCGFTLANEE-LIEILMRVIAPYPVPLPVSEIATQALSEAG--LARMKFQVLDLNAQGARLQAALSMYGGAKVLEGN 295 (354)
T ss_pred hHHHHhhhhCCHH-HHHHHHhhcCCCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC
Confidence 9999999999554 445555555555678888888888887653 23467777888999999999999985 7877775
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
|+|+|++++. ..++. +++.++||.|+++..+ ..++++||+++ +++++++++++|++
T Consensus 296 -g~f~~~~~~~---------~~~~~-~~l~~~gv~v~~~~~~--~~~~~lRis~~--~~e~~~~l~~al~~ 351 (354)
T PRK04635 296 -GNYVLAKFDD---------VDAVF-KALWDAGIVARAYKDP--RLANCIRFSFS--NRAETDKLIGLIRN 351 (354)
T ss_pred -CcEEEEECCC---------HHHHH-HHHHHCCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHH
Confidence 5799998862 12344 4556789999876432 23679999998 68999999998865
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=336.50 Aligned_cols=309 Identities=18% Similarity=0.260 Sum_probs=237.0
Q ss_pred CCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 32 DEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 32 ~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
+.+.++.++|||+.|+|+++|+.+.+++.+.. .....||. ...|++++|++++
T Consensus 2 ~~~~~~~~~i~l~~~~np~~p~~~~~a~~~~~-------------~~~~~yp~---~~~l~~~ia~~~~----------- 54 (311)
T PRK08354 2 HGGIREEGLIDFSASVNPYPPEWLDEMFERAK-------------EISGRYTY---YEWLEEEFSKLFG----------- 54 (311)
T ss_pred CCCCCccceeEecCCCCCCCCHHHHHHHHHHH-------------HHhhcCCC---hHHHHHHHHHHHC-----------
Confidence 44566778999999999998777777776531 22446764 4789999999874
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
++|++|+|+++++..++..+ .+||.|++++|+|+.|...++.. |++++.++ +|++.+++.++ +
T Consensus 55 ~~I~vt~G~~~al~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~~~--------~d~~~l~~~~~-------~ 117 (311)
T PRK08354 55 EPIVITAGITEALYLIGILA-LRDRKVIIPRHTYGEYERVARFF-AARIIKGP--------NDPEKLEELVE-------R 117 (311)
T ss_pred CCEEECCCHHHHHHHHHHhh-CCCCeEEEeCCCcHHHHHHHHHc-CCEEeecC--------CCHHHHHHhhc-------C
Confidence 37999999999999888655 48999999999999999999887 99997764 46788877654 4
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.. . ..+++++++|||
T Consensus 118 ~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~------~----------~~~~vi~~~S~S 181 (311)
T PRK08354 118 NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES------P----------EGENIIKLRTFT 181 (311)
T ss_pred CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc------c----------CCCcEEEEeccH
Confidence 567999999999999999999999999999999999999999987665321 1 236899999999
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC 351 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v 351 (469)
|+||+||+|+||+++ +.+.+.....++.++.+.+.++.+++++. .+++.+.++.+.+.++.+.+.+ .
T Consensus 182 K~~~l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l------~ 248 (311)
T PRK08354 182 KSYGLPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIEDD---FEHLRKTMPLIWREKERFEKAL------Y 248 (311)
T ss_pred hhcCCccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhc------C
Confidence 999999999999998 33445555556667777888887777642 2344555555555555554433 2
Q ss_pred ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 352 LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
.++.+++|+ ++++. +.++++.+ .++||.|+||+.|+. ++|+||+++ .+++.++++++|+++.
T Consensus 249 ~~~~~~~~~-~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRi~~~--~~~~~~~l~~al~~~~ 310 (311)
T PRK08354 249 VKSDANFFI-KDVGD---------AEKFVEFL-KRNGILVRDCTSFGL--PGYIRFSVR--DREENEKLIRALREWR 310 (311)
T ss_pred CCCCCcEEE-EECCC---------HHHHHHHH-HHCCeEEEecccCCC--CCeEEEEeC--CHHHHHHHHHHHHHhh
Confidence 356665554 66542 23566655 467999999999963 689999998 5777888888887653
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=337.98 Aligned_cols=317 Identities=17% Similarity=0.275 Sum_probs=245.6
Q ss_pred CCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 36 NPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
.+.++|+|+.|+|+++ ++.+.+++.+.... .....|++. |.++||+++|+++++.. +++++|
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~-----------~~~~~Y~~~-~~~~Lr~aia~~~~~~~-----~~~~~i 79 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNS-----------DTLRIYYDS-PDEELIEKILSYLDTDF-----LSKNNV 79 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCCC-ChHHHHHHHHHHhCCCC-----CCcceE
Confidence 3468899999999996 45566666553110 224458765 78999999999997541 579999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|++++|..++.++ |.|++++|+|..|...++.. |++++.+|++. ++.++... +. ++++
T Consensus 80 ~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~----~~-------~~~~ 141 (335)
T PRK14808 80 SVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAV-GAKFLEVPLTK--DLRIPEVN----VG-------EGDV 141 (335)
T ss_pred EEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHHHHHHc-CCeEEEecCCC--cCCCChhH----cc-------CCCE
Confidence 99999999999999888 67999999999999999988 99999999874 34444221 11 5689
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++++|||||||.++|.+++++|+ +++++||+||+|.++ .+.. ...... ..+++++++||||+|
T Consensus 142 i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f--~~~~---~~~~~~--------~~~~vi~~~S~SK~~ 204 (335)
T PRK14808 142 VFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEF--HGES---YVDLLK--------KYENLAVIRTFSKAF 204 (335)
T ss_pred EEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhh--cCCc---hHHHHH--------hCCCEEEEEechhhc
Confidence 99999999999999999988876 479999999999984 3322 223333 336899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
|++|+|+||++++++ +.+.+.+....+.++.++|.++..++.+.+ +..+.++.+.++++.+.+.|++.|+++.++
T Consensus 205 ~l~GlRvG~~v~~~~-~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~ 279 (335)
T PRK14808 205 SLAAQRIGYVVSSEK-FIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRITDS 279 (335)
T ss_pred cCcccceEEEEeCHH-HHHHHHHhcCCCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHCCCEECCC
Confidence 999999999999654 555555555456688899999988887543 356666777788899999999999888877
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
++ .|+|+.++.. +..++.+. +.++||.|+. | .+++||+++ ++++++++++.|+++
T Consensus 280 ~g-~f~~~~l~~~-------~~~~~~~~-l~~~Gi~V~~---~----~~~~Risi~--~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 280 RG-NFVFIFMEKE-------EKERLLEH-LRAKNIAVRS---F----REGVRITIG--KREENDMILKELEVF 334 (335)
T ss_pred CC-eEEEEeCCCc-------cHHHHHHH-HHHCCeEEEE---C----CCCeEEecC--CHHHHHHHHHHHHhh
Confidence 65 6889998731 12245555 4567999994 3 257999998 689999999998764
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=339.48 Aligned_cols=310 Identities=17% Similarity=0.245 Sum_probs=239.3
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
+.++|+|+.|+|+++++... +.. .....||.. ..+||++||++++ +++|++
T Consensus 19 ~~~~i~l~~ne~p~~~~~~~--~~~---------------~~~~~yp~~--~~~Lr~~ia~~~~----------~~~I~i 69 (330)
T PRK05664 19 LADWLDLSTGIAPWPWPVPA--IPA---------------DAWARLPET--DDGLEAAARAYYG----------APQLLP 69 (330)
T ss_pred HHHheeecCCcCCCCCCCcc--cCH---------------HHHHhCCCC--hHHHHHHHHHHhC----------CCCEEE
Confidence 34689999999998653110 110 123458754 3899999999985 579999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|++++|.+++. +.+||+|++++|+|+.|...++.. |++++.+|++ +++..++ ++++++
T Consensus 70 t~Gs~~al~~~~~--~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~v~~~----------~~~~~~~-------~~~~v~ 129 (330)
T PRK05664 70 VAGSQAAIQALPR--LRAPGRVGVLSPCYAEHAHAWRRA-GHQVRELDEA----------EVEAALD-------SLDVLV 129 (330)
T ss_pred CcCHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHHHc-CCeEEEechh----------hHhhhhc-------CCCEEE
Confidence 9999999998853 579999999999999999999887 9999999853 2344432 567899
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.+++.+++++|+++|++++++||+||+|.++ .. ..++..+. ..+++++++||||+||+
T Consensus 130 l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~--~~--~~s~~~~~---------~~~~vi~~~SfSK~~gl 196 (330)
T PRK05664 130 VVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDN--TP--QHSLAACA---------HRPGLIVLRSFGKFFGL 196 (330)
T ss_pred EeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccC--CC--cccccccc---------cCCCEEEEeeccccccC
Confidence 9999999999999999999999999999999999999863 22 12433331 23689999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 356 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~ 356 (469)
||+|+||++++++ +.+.+.+....+.++.+.|.++..+|.+..+ .++.++.++++++.+.+.|+++|+++.+ ..
T Consensus 197 ~GlRiG~~v~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~ 270 (330)
T PRK05664 197 AGARLGFVLAEPA-LLRALAELLGPWTVSGPTRWLAQAALADTPW----QRRQRERLLAASQRLAALLRRHGLTPAG-GC 270 (330)
T ss_pred CCcceEEEEeCHH-HHHHHHHhcCCCCCCHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHHCCCcccC-Cc
Confidence 9999999999654 5455555555556889999999999987544 4667888999999999999998865322 22
Q ss_pred eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 357 GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++|+|++++. ..++.+.+ .++||.|++ |+ .++++||+++. +++++++++++|+++.++
T Consensus 271 ~~f~~~~~~~---------~~~~~~~l-~~~gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 271 ALFQWVRTED---------AAALHEFL-ARRGILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYRKE 328 (330)
T ss_pred ceEEEEecCC---------HHHHHHHH-HHCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHhh
Confidence 3889998752 22455554 577999984 43 35799999985 678888888888877554
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=344.05 Aligned_cols=335 Identities=19% Similarity=0.284 Sum_probs=262.4
Q ss_pred CCCCCCCCCeeeeecccccc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 31 YDEVQNPTGIIQMGLAENQL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 31 ~~~~~~~~~~i~L~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
|.++.++.++|+|+.|++++ +++.+.+++.+.. .....|++ .|..+||+++|++++ +
T Consensus 15 ~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~-~g~~~lr~~ia~~~~--------~ 72 (352)
T PRK03321 15 YVPGKTVPGAIKLSSNETPFGPLPSVRAAIARAA-------------AGVNRYPD-MGAVELRAALAEHLG--------V 72 (352)
T ss_pred CCCCCCcccceeccCCCCCCCCCHHHHHHHHHHH-------------HhcCcCCC-CcHHHHHHHHHHHhC--------c
Confidence 55666666899999999998 4566777776531 23456864 689999999999996 6
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
++++|++|+|+++++..++..++++||.|+++.|+|..|...++.. |++++.+++++ ++.+|++.+++++++
T Consensus 73 ~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~~~~----- 144 (352)
T PRK03321 73 PPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVA-GATPVQVPLTP--DHTHDLDAMAAAITD----- 144 (352)
T ss_pred CHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHHc-CCEEEEccCCC--CCCCCHHHHHHhhcc-----
Confidence 7899999999999999999999999999999999999888777776 99999999874 356889999988764
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++++++++||+||||.+++.+++.++++.| +++++||+||+|.++.+++....+ ..... ..+++++++|
T Consensus 145 -~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~-~~~~~--------~~~~vi~~~S 213 (352)
T PRK03321 145 -RTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDG-LELVR--------DHPNVVVLRT 213 (352)
T ss_pred -CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcH-HHHHh--------hCCCEEEEec
Confidence 789999999999999999999988888865 479999999999987765432222 22222 3478999999
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
|||.||+||+|+||+++++ .+.+.+.+....+.++.++|.++.+++...+ .+. +..+.+.++++.+.+.|++.|+
T Consensus 214 ~SK~~g~~GlRiG~~v~~~-~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~---~~~-~~~~~~~~~r~~~~~~L~~~~~ 288 (352)
T PRK03321 214 FSKAYGLAGLRVGYAVGHP-EVIAALRKVAVPFSVNSLAQAAAIASLAAED---ELL-ERVDAVVAERDRVRAALRAAGW 288 (352)
T ss_pred chHHhhhHHHhhhhhcCCH-HHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH---HHH-HHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999964 4555555555555689999998888887532 233 3334445566788899998888
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+.++ +|+|+|++++. +..++.+.+ +++||.|.+ |+ +.++||+++ +.+++++++++|.+++.
T Consensus 289 ~~~~~-~g~~i~i~l~~--------~~~~~~~~l-~~~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 289 TVPPS-QANFVWLPLGE--------RTADFAAAA-AEAGVVVRP---FA---GEGVRVTIG--APEENDAFLRAARAWRA 350 (352)
T ss_pred ccCCC-CCCEEEEeCCC--------CHHHHHHHH-HHCCEEEEc---cC---CCcEEEeeC--CHHHHHHHHHHHHHHhc
Confidence 76544 57999999852 123566665 578999987 43 346999997 79999999999998764
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=340.29 Aligned_cols=326 Identities=17% Similarity=0.293 Sum_probs=254.0
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
..++|+.|+|+++ |+.+.+++.+.... .....|++. +..+||+++|++++ +++++|++|
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~-----------~~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~it 82 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKS-----------SQVNIYPDP-TAEKLREELARYCS--------VVPTNIFVG 82 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhc-----------CcccCCCCc-cHHHHHHHHHHHhC--------CCcccEEEe
Confidence 4599999999985 56677766653110 234568765 46999999999985 678999999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++++ .+|.+|++++++++++. ++++|++
T Consensus 83 ~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~~~~~-----~~k~v~l 154 (351)
T PRK14807 83 NGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIA-GAVEIPVKLK--EDYTYDVGSFIKVIEKY-----QPKLVFL 154 (351)
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEeecC--CCCCCCHHHHHHHhhcc-----CCCEEEE
Confidence 99999999999999999999999999999988877777 9999999986 34778999999988632 7899999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
+||+||||.+++.++++++++ +++.++|+||+|.++ + +....+ ... ..+++++++||||.||+|
T Consensus 155 ~~p~NPtG~~~~~~~l~~l~~---~~~~~~ivDe~y~~~-~-~~~~~~---~~~--------~~~~vi~~~S~SK~~~~~ 218 (351)
T PRK14807 155 CNPNNPTGSVIEREDIIKIIE---KSRGIVVVDEAYFEF-Y-GNTIVD---VIN--------EFENLIVLRTLSKAFGLA 218 (351)
T ss_pred eCCCCCCCCCCCHHHHHHHHH---hCCCEEEEeCcchhh-c-ccchHH---Hhh--------hCCCEEEEecchHhcccc
Confidence 999999999999988766665 567789999999874 3 322222 222 347899999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCc
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNA 356 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~ 356 (469)
|+|+||+++++ .+.+.+......+.++.+.|.++..++++. + +++.++.+.++++.+.+.|++. |+++.++ +
T Consensus 219 GlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~----~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~-~ 291 (351)
T PRK14807 219 GLRVGYAVANE-NILKYLNLVKSPYNINSLSQVIALKVLRTG-V----LKERVNYILNERERLIKELSKIPGIKVYPS-K 291 (351)
T ss_pred hhceeeeecCH-HHHHHHHHccCCCCcCHHHHHHHHHHHhHH-H----HHHHHHHHHHHHHHHHHHHHhCCCcEECcC-C
Confidence 99999999954 455555555555668899999999999753 2 4555567778888899999876 8877654 5
Q ss_pred eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 357 GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
|+|+|++++. ..++++.++ ++||.|+++..+. ..++++||+++ ++++++++++.|++++
T Consensus 292 ~~~~~i~~~~---------~~~~~~~l~-~~gV~v~~~~~~~-~~~~~iRis~~--~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 292 TNFILVKFKD---------ADYVYQGLL-ERGILVRDFSKVE-GLEGALRITVS--SCEANDYLINGLKELL 350 (351)
T ss_pred ccEEEEEcCC---------HHHHHHHHH-HCCEEEEECCCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHhh
Confidence 6899999862 224555554 6799999865322 23679999998 5788899999988764
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=342.17 Aligned_cols=327 Identities=19% Similarity=0.310 Sum_probs=257.4
Q ss_pred CCCeeeeeccccccCh-HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|+|+.|+|++++ +.+.+++.+. ......|++..+ ++||+++|++++ +++++|+
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 90 (361)
T PRK00950 33 PESIIKLGSNENPLGPSPKAVEAIEKE-------------LSKIHRYPEPDA-PELREALSKYTG--------VPVENII 90 (361)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHHH-------------HHhhcCCCCCCH-HHHHHHHHHHhC--------CCHHHEE
Confidence 4489999999998854 5566655543 123456887654 999999999985 6789999
Q ss_pred E-eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 L-TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~-t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+ |+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++.+ ++|.+|++++++.+++ ++++
T Consensus 91 ~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~~~~~--~~~~~~~~~l~~~~~~------~~~~ 161 (361)
T PRK00950 91 VGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAH-GAKPVYAKRE--EDFSLDVDSVLNAITE------KTKV 161 (361)
T ss_pred EeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEeecC--CCCCcCHHHHHHHhcc------CCCE
Confidence 9 899999999999999999999999999999988878777 9999999854 4678999999988754 7889
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
+++++|+||||.+++.+++.++ |+++|+++|+||+|.++. +. +...+.+ ..+++++++||||+|
T Consensus 162 v~~~~p~nptG~~~~~~~l~~l---~~~~~~~li~De~y~~~~--~~---~~~~~~~--------~~~~vi~~~S~SK~~ 225 (361)
T PRK00950 162 IFLCTPNNPTGNLIPEEDIRKI---LESTDALVFVDEAYVEFA--EY---DYTPLAL--------EYDNLIIGRTFSKVF 225 (361)
T ss_pred EEEeCCCCCCCCCcCHHHHHHH---HHHCCcEEEEECchhhhC--cc---chHHHHH--------hcCCEEEEEeehHhh
Confidence 9999999999999998885555 557899999999998753 22 2222333 336899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
|+||+|+||+++++. +.+.+.+....+.++++.|.++..++.+.++ +++.++.++++++++.+.|. +.+. +
T Consensus 226 g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~l~---~~~~-~ 296 (361)
T PRK00950 226 GLAGLRIGYGFVPEW-LIDYYMRAKTPFSLTRLSQAAAIAALSDKEY----IEKSIEHGIKSREYLYNELP---FKVY-P 296 (361)
T ss_pred cCchhhcchhcCCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHhhcC---eeEC-C
Confidence 999999999999654 4444555555555788999998899876443 56667777888888877775 5554 4
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+|+|+|++++. .+..++++.++ ++||.++||..|+..+++++|++++ +++++++++++|+++++
T Consensus 297 ~~~~~i~~~~~~-------~~~~~~~~~l~-~~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 297 SEANFVLVDVTP-------MTAKEFCEELL-KRGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIVE 361 (361)
T ss_pred CcceEEEEECCC-------CCHHHHHHHHH-HCCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHhC
Confidence 567999999842 12346777766 5699999999887555789999998 68899999999998763
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=336.04 Aligned_cols=316 Identities=16% Similarity=0.277 Sum_probs=244.9
Q ss_pred CeeeeeccccccCh-HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
++|+|+.|+|++++ +.+.+++.+.... .....|++ .|.++||+++|++++ +++++|++|
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~-~g~~~lr~~ia~~~~--------~~~~~I~~t 78 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKR-----------VPFNRYPH-ITSDPLREAIAEFYG--------LDAENIAVG 78 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhc-----------CccccCCC-CCHHHHHHHHHHHhC--------cCcceEEEc
Confidence 67999999999853 5555555442110 12467875 689999999999996 689999999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
+|+++++..++..+ +||+|+++.|+|..|...+... |++++.++++. +|.+|++.+++.+. +++++++
T Consensus 79 ~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~~-------~~~~v~~ 146 (337)
T PRK03967 79 NGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAKLN-GIPVIDVPLKE--DFTIDGERIAEKAK-------NASAVFI 146 (337)
T ss_pred CCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHHHc-CCeEEEeecCC--CCCcCHHHHHHhcc-------CCCEEEE
Confidence 99999999988877 7999999999999888777776 99999999873 57889998887542 6788999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
+|||||||.+++.+++.+++ +++++||+||+|.++. .. +...... ..+++|+++||||+||+|
T Consensus 147 ~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~--~~---~~~~~~~--------~~~~vi~l~S~SK~~~l~ 209 (337)
T PRK03967 147 CSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFS--GK---SLIGLID--------EYPNLILLRTFSKAFGLA 209 (337)
T ss_pred eCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhc--cc---chHHHHh--------hCCCEEEEecchHhhcch
Confidence 99999999999988866654 4799999999999853 22 2222222 336899999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 357 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g 357 (469)
|+|+||++++++ +.+.+.+....++++.++|.++..+|++.++ ..+.++.+.++++.+.+.|.+. ..+.++
T Consensus 210 GlRiG~iv~~~~-~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~----~~~~~~ 280 (337)
T PRK03967 210 GIRAGYAIANEE-IIDALYRIKPPFSLNILTMKIVRLALDHYDL----IEERIDYIIKERERVRRELGEY----AYPSDA 280 (337)
T ss_pred hhhheeeecCHH-HHHHHHhhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHhccC----cCCCCC
Confidence 999999999644 5555555555666889999999999986543 4445555566778888888764 235678
Q ss_pred EEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 358 LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 358 ~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+|+|++++ +++.++ ++||.|+++.. ..++++||+++ +.++.++++++|.++.+.+
T Consensus 281 ~~~~~~~~-------------~~~~l~-~~gi~v~~~~~---~~~~~~Ri~~~--~~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 281 NFLLLKLD-------------AYDYLL-ENGIVVRKLSG---RLEGHIRVTVG--KREENDEFIKALKEIKEGY 335 (337)
T ss_pred cEEEEhHH-------------HHHHHH-HCCEEEEeCCC---CCCCeEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 99999874 345555 56999997652 23569999998 5788899999998887654
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=335.71 Aligned_cols=326 Identities=22% Similarity=0.354 Sum_probs=263.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|||+.|.|+++ ++.+.+++.+.. .....|++..+ ++||+++|++++ +++++|+
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 75 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAEA-------------DKLHRYPDPDP-AELKQALADYYG--------VDPEQIL 75 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHhH-------------HHhhcCCCCCH-HHHHHHHHHHhC--------cChHHEE
Confidence 357999999999985 456677666531 23467887766 999999999996 5789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||+|++++|+|+.+...+... |++++.++++. ++.+|++.+++.+++ ++++|
T Consensus 76 ~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~~~~------~~~~v 146 (346)
T TIGR01141 76 LGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIH-GAEVVKVPLDE--DGQLDLEDILVAIDD------KPKLV 146 (346)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEeccCC--CCCCCHHHHHHhcCC------CCCEE
Confidence 9999999999999999999999999999999888777776 99999999874 367899999987643 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.++++++++.|+ +++++|+||+|.++.+.. +...... ..+++++++|+||.||
T Consensus 147 ~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~----~~~~~~~--------~~~~~i~~~S~sK~~g 213 (346)
T TIGR01141 147 FLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP----STLPLLA--------EYPNLIVLRTLSKAFG 213 (346)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc----cHHHHHh--------hCCCEEEEehhhHhhh
Confidence 99999999999999999999999887 799999999998743321 1222222 2357899999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS 354 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~ 354 (469)
++|+|+||+++++ .+.+.+......+.++.++|.++.+++++.. +.++.++.++++++.+.+.|+++ |+++.++
T Consensus 214 ~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 288 (346)
T TIGR01141 214 LAGLRIGYAIANA-EIIDALNKVRAPFNLSRLAQAAAIAALRDDD----FIEKTVEEINAERERLYDGLKKLPGLEVYPS 288 (346)
T ss_pred chhhhceeeecCH-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhcCCCEECCC
Confidence 9999999999954 4555555555555678899999999987754 46778888999999999999988 8886544
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L 424 (469)
+|+|+|++++. +..++++.|. ++||.+.||..|+.. ++++|++++ +++++++++++|
T Consensus 289 -~g~~~~~~~~~--------~~~~~~~~L~-~~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l 345 (346)
T TIGR01141 289 -DANFVLIRFPR--------DADALFEALL-EKGIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAAL 345 (346)
T ss_pred -cCCEEEEecCC--------CHHHHHHHHH-HCCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHh
Confidence 56899999874 1235666665 679999999988644 789999987 789999998876
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=330.27 Aligned_cols=313 Identities=19% Similarity=0.273 Sum_probs=251.2
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.+++|+|+.|+|+++++... .. .....+|++..+ ++||+.+|++++ +++++|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~----~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~ 69 (330)
T TIGR01140 16 PEDWLDFSTGINPLGPPVPP----IP-------------ASAWARYPDPEY-DELRAAAAAYYG--------LPAASVLP 69 (330)
T ss_pred hhheeEccccCCCCCCChhh----cc-------------hHHHhhCCCccH-HHHHHHHHHHhC--------CChhhEEE
Confidence 44689999999999875211 11 144678988776 999999999985 57899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..+..++ .+| .|++++|+|..+...+... |++++.++ |++.+++.++ ++++++
T Consensus 70 t~G~~~~i~~~~~~l-~~g-~vl~~~p~y~~~~~~~~~~-g~~~~~~~---------d~~~l~~~~~-------~~~~v~ 130 (330)
T TIGR01140 70 VNGAQEAIYLLPRLL-APG-RVLVLAPTYSEYARAWRAA-GHEVVELP---------DLDRLPAALE-------ELDVLV 130 (330)
T ss_pred CCCHHHHHHHHHHHh-CCC-eEEEeCCCcHHHHHHHHHc-CCEEEEeC---------CHHHHHhhcc-------cCCEEE
Confidence 999999999987664 677 6999999999999988877 99999887 5678887763 567899
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++|+||||.+++.+++++|+++|+++|++||+||+|.++.+. .++..+.. ..+++++++|+||+||+
T Consensus 131 i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~----~~~~~~~~--------~~~~~i~~~S~SK~~g~ 198 (330)
T TIGR01140 131 LCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD----ASLAPQAA--------RFPGLVVLRSLTKFFGL 198 (330)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc----cchhhHhc--------cCCCEEEEEecchhhcC
Confidence 9999999999999999999999999999999999999876432 13333322 34789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~ 355 (469)
+|+|+||++++++ +.+.+......+.+++++|.++..++.+.++ .++.+++++++++.+.+.|++++ +++.+ .
T Consensus 199 ~G~R~G~i~~~~~-~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~ 272 (330)
T TIGR01140 199 AGLRLGFVVAHPA-LLARLREALGPWTVNGPARAAGRAALADTAW----QAATRARLAAERARLAALLARLGGLEVVG-G 272 (330)
T ss_pred chhhhhheeCCHH-HHHHHHhcCCCCCchHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHhCCCceECC-C
Confidence 9999999999654 5555555555566788999999999987655 55678899999999999999987 55544 4
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L 424 (469)
+|+|+|++++. ..++++.++ ++||.+.||..|+..+.+++||+++. +.++ +.++++|
T Consensus 273 ~~~f~~~~~~~---------~~~l~~~l~-~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 273 TALFLLVRTPD---------AAALHEALA-RRGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred CCeEEEEEcCC---------HHHHHHHHH-HCCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 67999998863 235777776 46999999999965556799999984 3344 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=299.92 Aligned_cols=347 Identities=20% Similarity=0.260 Sum_probs=269.4
Q ss_pred ccccCCCCCCcHHHHHHHHHHHH-hHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhC
Q 043923 78 ELALFQDYHGLPAFKKALVEFMS-EIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRT 156 (469)
Q Consensus 78 ~~~~Y~~~~g~~~Lr~aia~~l~-~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~ 156 (469)
...+|++..|.++|..-+.++.+ ..+.+. ...-+|++|+|.+.++..+++.++++||.|+++.++|+.-...++..
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~p~--~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~- 168 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHAPP--YKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEAL- 168 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccCCC--CCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhcccc-
Confidence 34679999999999999999665 233311 23348999999999999999999999999999999999988888877
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhc---CCceeEEEEecC--CCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKR---HLKVKGVLVTNP--SNPLGTTMSRNELNLLVNIITEKNIHLISDE 231 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~---~~~~~~vvl~~P--~NPtG~~~s~e~l~~l~~~~~~~~~~iI~De 231 (469)
|+.+++|++|.++ ++++.|++.++.+... .++++ |+++-| +||||..++.+..++|.++|++|+++||+||
T Consensus 169 gv~~ipv~md~~G---i~pE~l~~il~~w~~~~~k~~~p~-vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 169 GVKIIPVKMDQDG---IDPESLEEILSNWKPGSYKKPKPH-VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred CceEEeccccCCC---CCHHHHHHHHhcCCcccccCCCCe-EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 9999999998654 8999999998765322 34555 566656 8999999999999999999999999999999
Q ss_pred cccccccCC--------CCccchhhhhhcc--ccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc
Q 043923 232 IYSGTVFSS--------PGFVSIMEILKDR--NCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF 301 (469)
Q Consensus 232 ay~~~~~~~--------~~~~s~~~~~~~~--~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~ 301 (469)
.|.-+.|+. .+..+...+...+ .+...|..++||.+.||||.++ ||+|+||+.+++..+...+......
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVA 323 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhccee
Confidence 998776662 1111211121111 1222457789999999999997 9999999999766665555433211
Q ss_pred -ccCcHHHHHHHHHHhcC---chhhHHHHHHHHHHHHHHHHHHHHHHHhc---C-CceecCCceEEEEEecccc--cccC
Q 043923 302 -GLVSSQTQYLLSALLSD---KKFTQNYISENKKRLKQRHRKLVSGLEKA---G-ISCLKSNAGLFCWVDMRHL--LRSN 371 (469)
Q Consensus 302 -~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---g-~~v~~~~~g~~~~v~~~~~--~~~~ 371 (469)
..+|..+|.++.++|.. .+| .+|+.+.+..|..|+..+..+|.+. + +++.+|.+|+|+||+++-. ...+
T Consensus 324 t~~pSg~sq~iv~a~l~~wgqeG~-~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~ 402 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKRWGQEGF-LRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKK 402 (472)
T ss_pred ecCcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccccccccc
Confidence 12566777777776664 334 5889999999999999999999886 4 6889999999999999721 1223
Q ss_pred ChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CC----CeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 372 TFEAEMELWKKIVYDVKLNISPGSSCHCT-EP----GWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 372 ~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~----~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
......+.....+.++||.+.+|..|... +. -++|++++..+.|+++++++|+..++++.-+
T Consensus 403 ~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 403 SINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred chHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHHhh
Confidence 33445566777778899999999999764 22 2999999988999999999999999998765
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=285.11 Aligned_cols=344 Identities=27% Similarity=0.501 Sum_probs=266.8
Q ss_pred eeeeccccccCh--HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 41 IQMGLAENQLSF--DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 41 i~L~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
|||+.|.+++.+ +.+.+..+... -.....|++..|..+++++++++++..++. ...++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~~~ 66 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAAL------------RAGLLGYYPDPGLPELREAIAEWLGRRGGV--DVPPEEIVVTN 66 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhh------------ccCCCCCCCCCCcHHHHHHHHHHHHHHhCC--CCCcceEEEec
Confidence 578888888743 33444333110 023456888889999999999999977652 34578999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~ 198 (469)
|+++++..++.++.++||+|+++.|+|..+...++.. |.+++.++.+..+.+..+.+.++..+. +++++|+++
T Consensus 67 ~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~v~i~ 139 (350)
T cd00609 67 GAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA-GAEVVPVPLDEEGGFLLDLELLEAAKT------PKTKLLYLN 139 (350)
T ss_pred CcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CCEEEEEecccccCCccCHHHHHhhcC------ccceEEEEE
Confidence 9999999999999999999999999999999999887 999999998765543332244444332 388999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc
Q 043923 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG 278 (469)
Q Consensus 199 ~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 278 (469)
+|+||||.+++.+++++|+++|+++|+++|+|++|+.+.+.+... ...... +..+.+++++|++|.++++|
T Consensus 140 ~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~s~~K~~~~~g 210 (350)
T cd00609 140 NPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP-PALALL--------DAYERVIVLRSFSKTFGLPG 210 (350)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccc-ccccCc--------CccCcEEEEeecccccCCcc
Confidence 999999999999999999999999999999999999765544322 101111 14467899999999999899
Q ss_pred ceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce-ecCC
Q 043923 279 FRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC-LKSN 355 (469)
Q Consensus 279 lRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v-~~~~ 355 (469)
.|+||+++++..+.+.+.....+ +..+...+.++..++.... ++.++.++.+.++++++.+.|++.+... ..+.
T Consensus 211 ~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 287 (350)
T cd00609 211 LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE---EHLEELRERYRRRRDALLEALKELGPLVVVKPS 287 (350)
T ss_pred cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 99999999764555555544333 4577888888888888753 4577888889999999999999986543 5667
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
+|+++|+.++.. ...+.+.+++.++||.+.++..|....+.++|++++.. ++++++++++|+
T Consensus 288 ~g~~~~~~~~~~-------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al~ 349 (350)
T cd00609 288 GGFFLWLDLPEG-------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERLA 349 (350)
T ss_pred ccEEEEEecCCC-------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence 889999998753 12245677788889999999888755577999999975 999999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=255.33 Aligned_cols=355 Identities=20% Similarity=0.286 Sum_probs=257.9
Q ss_pred CCCCeeeeeccccccChH-------HHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCC
Q 043923 36 NPTGIIQMGLAENQLSFD-------LLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVT 108 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~ 108 (469)
+.++.|.|+.|.+..-|+ ...+.+++. ...+.+++|..++|...|.+++++++++.+|.+
T Consensus 28 rt~g~imLggGNPa~iPem~~~f~~~~aemla~~-----------~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwn-- 94 (417)
T COG3977 28 RTPGAIMLGGGNPARIPEMDDYFQDLLAEMLASG-----------KATEALCNYDGPQGKAVLIDALAKMLRREYGWN-- 94 (417)
T ss_pred cCCCceeeCCCCcccChhHHHHHHHHHHHHHhcc-----------hHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCC--
Confidence 445789999776554331 122222221 113568899999999999999999999999855
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcC---CC--CEEEEc-cCCCcChHHHHhhhCCCEEEE---eeccCCCC--cccCHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAE---PG--EAFLLP-TPYYPGFDRDLKWRTGVEIVP---IQCTSLNG--FQITETA 177 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~---~g--d~Vl~~-~P~y~~~~~~~~~~~g~~~~~---v~~~~~~~--~~~d~~~ 177 (469)
+++.+|.+|||++.+.+.++..|.. .| +.|++| .|.|.+|..+...- ..-|.. +.+.+.+- |.+|++.
T Consensus 95 it~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~-d~fVs~kP~iel~~~g~FKY~vDF~~ 173 (417)
T COG3977 95 ITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEE-DLFVSAKPNIELLPAGQFKYHVDFEH 173 (417)
T ss_pred CccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCc-cceeeccCCcccccccceeeccCHHH
Confidence 7899999999999999999988842 33 355555 88999887653221 111111 11222222 5567766
Q ss_pred HHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccccc
Q 043923 178 IEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 257 (469)
Q Consensus 178 l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~ 257 (469)
+.- +..+.+|+++.|.||||.+++.+|+.+|..++++||+.+|+|.+|+-. |.+-.+..+.-+
T Consensus 174 l~i--------~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd~~~~-------- 236 (417)
T COG3977 174 LHI--------GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSDATPL-------- 236 (417)
T ss_pred ccc--------ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceeccccccc--------
Confidence 653 237889999999999999999999999999999999999999999854 444333332223
Q ss_pred CCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc--cCcHHHHHHHHHHhcCchhhHHHHHHH-HHHHH
Q 043923 258 TQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFTQNYISEN-KKRLK 334 (469)
Q Consensus 258 ~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~-~~~l~ 334 (469)
-.+|++.|.|+|| +|+||.|+|.+++ ++.+.+.+..+.... .++.+.+++++.+++.++. .+..++. +--|+
T Consensus 237 --w~~NiilC~SLSK-~GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl-~rlseqVIrPFY~ 311 (417)
T COG3977 237 --WNENIILCMSLSK-LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDL-LRLSEQVIRPFYR 311 (417)
T ss_pred --CCCCEEEEeehhh-cCCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchH-HHHHHHhhhHHHH
Confidence 3489999999999 5899999999999 556667777665442 2566889999999999886 4444443 33455
Q ss_pred HHHHHHHHHHHh----cCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC-------CC
Q 043923 335 QRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-------PG 403 (469)
Q Consensus 335 ~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~-------~~ 403 (469)
++.+...+.|++ ..+.+..|+|..|+|+-+.+..- .++++.++| ++.||++.||..|.+.- ..
T Consensus 312 ~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPI-----tt~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ewpH~hq 385 (417)
T COG3977 312 NRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPI-----TTEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQ 385 (417)
T ss_pred HHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCC-----CHHHHHHHH-HhCeEEEecccccCCCCCCCCCCccc
Confidence 555555555554 36778899999999998876432 244666654 67799999999887632 45
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 404 WFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 404 ~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
|+|+++.. ++++|++++++|.+.+++.-+
T Consensus 386 C~Rmn~~~-~~~~ie~Gva~lae~ve~~yq 414 (417)
T COG3977 386 CMRMNYVP-EPEKIEKGVAILAEEVERAYQ 414 (417)
T ss_pred eEEEecCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 89999985 899999999999999887655
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=254.73 Aligned_cols=331 Identities=20% Similarity=0.294 Sum_probs=257.7
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.+++|.|+.++|+..|+.-. + +--..|+.+.. ..|+.++++- -++++|+|++
T Consensus 40 G~~iv~ld~~e~~ryPdP~q--~-----------------efk~~~~d~rn-k~ls~a~~~d--------kpLt~dnic~ 91 (375)
T KOG0633|consen 40 GRDIVKLDANENPRYPDPEQ--M-----------------EFKYVYPDPRN-KRLSDALAQD--------KPLTSDNICV 91 (375)
T ss_pred CCCceEeccccCCCCcCHHH--c-----------------ccccccCCccc-chhhhhcccC--------CCCCccceEE
Confidence 34688888888887543111 1 11234666654 6777776653 1478999999
Q ss_pred eCChHHHHHHHHHHhcCCC-CEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPG-EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+-|+.|.|.+++++.+.|| ++|++-.|+|+.|.-.+... +++++.+|+++ +|.++.+++.+.++. +..+|.+
T Consensus 92 GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iN-d~eVvkvpl~p--dF~lnvdai~evl~~----ds~iK~~ 164 (375)
T KOG0633|consen 92 GVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAIN-DAEVVKVPLNP--DFSLNVDAIAEVLEL----DSKIKCI 164 (375)
T ss_pred ecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecC-CceEEEecCCC--CccccHHHHHHHHhc----cccceEE
Confidence 9999999999999999999 89999999999998777776 99999999984 899999999888764 3478999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||..+..++++++++.-. |.++++||+|.+ |.+. .|-..++. .++|++++.++||.||
T Consensus 165 F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYid--Fsg~--~S~~~lV~--------kYpNLivlqTlSKsfG 230 (375)
T KOG0633|consen 165 FLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYID--FSGV--ESRMKLVK--------KYPNLIVLQTLSKSFG 230 (375)
T ss_pred EEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEe--eccc--cccchHhH--------hCCceeehhhhhhhcC
Confidence 99999999999999999888887332 789999999998 5552 24455665 6699999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GI-SCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~-~v~~ 353 (469)
++|+|+||-.. +..+...+..+..+..+|.+...++.+++++.. -+.++..++.+-+.|.+|...|.+. ++ .+..
T Consensus 231 LAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~keLt~v~~~~~~~g 307 (375)
T KOG0633|consen 231 LAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLFKELTEVPFLNDYPG 307 (375)
T ss_pred cceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHHHHhhcCccccCCCC
Confidence 99999999998 555778888888777789988888889998654 3456778888888888888888876 32 2333
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--CCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
+...+|+.+++.+... ..+..+..+++.++||.|+- .+. ...|++||+++ ++|+...+++.|++++
T Consensus 308 g~daNFiLi~v~~~~n----~~akkly~q~at~~gVvVRf---rgse~~c~G~lRitvG--t~EentvL~k~~K~~l 375 (375)
T KOG0633|consen 308 GSDANFILIEVTGGDN----GMAKKLYKQDATKMGVVVRF---RGSEEGCKGYLRITVG--TPEENTVLMKCLKQFL 375 (375)
T ss_pred cccccEEEEEEcCCCc----HHHHHHHHHHHHhcceEEEE---cCCccccceeEEEEcC--CcccchHHHHHHHhhC
Confidence 4445788898875422 22345677778889999982 221 23789999998 6888899999988763
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=285.63 Aligned_cols=351 Identities=15% Similarity=0.165 Sum_probs=254.6
Q ss_pred CCCeeeeecccc--ccChHH----HHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 37 PTGIIQMGLAEN--QLSFDL----LESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 37 ~~~~i~L~~~~n--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
..++|+|+++++ .+++|. +.++..+.. ......|.+..|.++||++++++++
T Consensus 35 g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~------------~~g~~~Y~~~~g~~~Lreaia~~~~---------- 92 (460)
T PRK13238 35 GYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAM------------MRGDEAYAGSRSYYRLEDAVKDIFG---------- 92 (460)
T ss_pred CCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHH------------HhCCcccCCCCCHHHHHHHHHHHhC----------
Confidence 346899999998 454432 333222210 0224579999999999999999995
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCC------CCcc--cCHHHHHHHH
Q 043923 111 TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSL------NGFQ--ITETAIEEAY 182 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~------~~~~--~d~~~l~~~i 182 (469)
.+++++|+|+++|+.+++.++++||| |++++|.|..|...+... |.+++.+++++. ++|. +|+++|++.+
T Consensus 93 ~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~-G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i 170 (460)
T PRK13238 93 YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELN-GATAVDLVIDEALDTGSRHPFKGNFDLEKLEALI 170 (460)
T ss_pred CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHc-CCEEEEEeccccccccccccccCCcCHHHHHHHH
Confidence 45799999999999999999999999 999999999998878777 999999998642 3555 9999999999
Q ss_pred HHHHhcCCceeEEEEecCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEecccc--ccccCC-----CCccchhhhhhccc
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLG-TTMSRNELNLLVNIITEKNIHLISDEIYS--GTVFSS-----PGFVSIMEILKDRN 254 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~--~~~~~~-----~~~~s~~~~~~~~~ 254 (469)
++.. .+++++|++++|+|||| .+++.+++++|.++|++||++||+|+++. ..+|.. ....++.++
T Consensus 171 ~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i----- 243 (460)
T PRK13238 171 EEVG--AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI----- 243 (460)
T ss_pred hhcC--CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH-----
Confidence 7421 12699999999999997 99999999999999999999999999774 233422 112333322
Q ss_pred cccCCcCCeEEEEccCccccCCCcceE------EEEEecCHHHHHHHHHhc-------ccccCcHHHHHHHHHHhcCchh
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRV------GAIYSNDDMVVAAATKMS-------SFGLVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRi------G~li~~~~~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~ 321 (469)
+..++|++|++.++|+++ |++++++..+.+.++... +++..+...|.+++..|.+..-
T Consensus 244 ---------~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~ 314 (460)
T PRK13238 244 ---------AREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMD 314 (460)
T ss_pred ---------hhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhC
Confidence 223456666666666664 355655455555554442 2232345557777766654211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccc---cCChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLR---SNTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~---~~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
.+++..+. +++++|.+.|.+.|+++..|.+|+|+++++..... ... ..+.+++.+|+++.||.+.|++.|.
T Consensus 315 -~~~~~~~~----~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~-~~~~~~a~~L~~e~GV~~~~~~~f~ 388 (460)
T PRK13238 315 -EDYLAYRI----GQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQ-FPAQALACELYLEAGIRGVEIGSLL 388 (460)
T ss_pred -hHHHHHHH----HHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCC-CchHHHHHHHHHHcCeeeeccccee
Confidence 23333332 25688999999999999999999999999976421 111 1246799999999999999998776
Q ss_pred CCC-----------CCeEEEEeec--CCHHHHHHHHHHHHHHHHhhcc
Q 043923 399 CTE-----------PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 399 ~~~-----------~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
... .+.+|+++.. .+.++++.+.++|+++.++...
T Consensus 389 ~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~~ 436 (460)
T PRK13238 389 LGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENRES 436 (460)
T ss_pred cccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhHhh
Confidence 422 3689999986 3999999999999998754443
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=263.86 Aligned_cols=345 Identities=21% Similarity=0.329 Sum_probs=267.3
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCCcChHHHHhhhC
Q 043923 78 ELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-EPGEAFLLPTPYYPGFDRDLKWRT 156 (469)
Q Consensus 78 ~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~~ 156 (469)
.+..|...+|.+-+|+.+|+|+.++.| ++.+|++|++|.|++.|+..++..++ .+.+.|++|-|.|+-|...+...
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG--~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~- 181 (475)
T KOG0258|consen 105 SLGAYSDSQGVPGVRKHVAEFIERRDG--IPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLL- 181 (475)
T ss_pred cccccccccCChhHHHHHHHHHHhccC--CCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHh-
Confidence 456799999999999999999999988 77899999999999999999999885 56789999999999999888887
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|...+++-++++.+|.+|.++|++.+++.. ++.+++++++.||.||||.+++.+.+++|+.+|.+++++++.||+|.+-
T Consensus 182 ~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~N 260 (475)
T KOG0258|consen 182 GGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDN 260 (475)
T ss_pred CCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhh
Confidence 999999999999999999999999998876 7889999999999999999999999999999999999999999999999
Q ss_pred ccCCC-CccchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEe--cCHHHHHHHHHhcc-cccCcHHHHHH
Q 043923 237 VFSSP-GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYS--NDDMVVAAATKMSS-FGLVSSQTQYL 311 (469)
Q Consensus 237 ~~~~~-~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~--~~~~~~~~~~~~~~-~~~~s~~~q~~ 311 (469)
+|... .|.|+...+.+++..-. +.--++.++|.||.+ |=.|.|-||+-. -.+.+.+.+.++.. -.+.+...|..
T Consensus 261 vy~~~skFhSfKKvl~emg~~~~-~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~ 339 (475)
T KOG0258|consen 261 VYTTGSKFHSFKKVLHEMGNPYP-DNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKL 339 (475)
T ss_pred ccCCCcchHhHHHHHHHhcCccC-CceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhh
Confidence 88754 77888777665521000 011255678889987 458999999843 23444444443332 23344455555
Q ss_pred HHHHhcC-----chh--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEeccccc------ccCChhHHH
Q 043923 312 LSALLSD-----KKF--TQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLL------RSNTFEAEM 377 (469)
Q Consensus 312 ~~~~l~~-----~~~--~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~------~~~~~~~~~ 377 (469)
.-....- ..+ .....+.....++++.+.+.+.++.+ |+++.+++|.+|++-++.=+. .......+.
T Consensus 340 vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~ 419 (475)
T KOG0258|consen 340 VDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDE 419 (475)
T ss_pred hceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcH
Confidence 5444442 111 13334556677888889999999988 999999999999976653111 112223455
Q ss_pred HHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 378 ELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 378 ~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
-.|.+||+..||.+.||+.||.. +.-++|.++- ... + +.+++++++-.+.
T Consensus 420 FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiL--p~~-~-~~i~~~~~fH~~f 470 (475)
T KOG0258|consen 420 FYCLKLLEATGICVVPGSGFGQKEGTYHFRTTIL--PPG-L-EIIEKFKKFHAEF 470 (475)
T ss_pred HHHHHHHHhcCeEEecCCCCCCCCceeEEEEeec--Cch-h-HHHHHHHHHHHHH
Confidence 67899999999999999999974 3458999995 233 4 7777777665543
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=264.70 Aligned_cols=322 Identities=14% Similarity=0.152 Sum_probs=223.7
Q ss_pred eeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCC
Q 043923 40 IIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAG 119 (469)
Q Consensus 40 ~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G 119 (469)
+|||++|+|+.|++.+.+++.+.. .....|++..+..+|++++|++++ + +.+++++|
T Consensus 1 ~~~~~~~~~~~p~~~~~~a~~~~~-------------~~~~~Y~~~~~~~~L~~~la~~~g--------~--~~~~v~~~ 57 (333)
T PRK10534 1 MIDLRSDTVTRPSRAMLEAMMAAP-------------VGDDVYGDDPTVNALQDYAAELSG--------K--EAALFLPT 57 (333)
T ss_pred CcccccccCCCCCHHHHHHHHhcc-------------CCCcccCCCHHHHHHHHHHHHHhC--------C--CeEEEeCc
Confidence 589999999998888888876642 234568656678999999999986 2 34467788
Q ss_pred hHHHHHHHHHHhcCCCCEEEEccCCCcC-hHHH-HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 120 ATSANETLMFCLAEPGEAFLLPTPYYPG-FDRD-LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 120 ~~~al~~~~~~l~~~gd~Vl~~~P~y~~-~~~~-~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
+++++..++.+++.+||.|+++.|+|.. |... +....+++++.++++ .+|.+|++++++++++......++++|++
T Consensus 58 g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 58 GTQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred hHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEE
Confidence 8888888888889999999999888753 3221 233313677888775 46789999999887531111115789999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC--CccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
|||+ ||.+++.+++++|+++|++|+++|++||+|. |... ...+...+.. ..++++ .||||.||
T Consensus 136 ~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~---~~~~~~~~~~~~~~~~--------~~~~~~--~s~SK~~~ 200 (333)
T PRK10534 136 ENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARI---FNAVVAYGCELKEITQ--------YCDSFT--ICLSKGLG 200 (333)
T ss_pred ecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHH---HHHHHHcCCCHHHHHh--------cCCEEE--EEeEcCCC
Confidence 9776 5999999999999999999999999999987 3210 0112222211 113333 38999988
Q ss_pred CCcceEE-EEEecCHHHHHHHHHhccccc----CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 043923 276 LPGFRVG-AIYSNDDMVVAAATKMSSFGL----VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS 350 (469)
Q Consensus 276 ~~GlRiG-~li~~~~~~~~~~~~~~~~~~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~ 350 (469)
++ +| |+++ ++.+.+.+.+....+. .+.+.+.++...|++ .. +..+...+.++++.+.|+++|++
T Consensus 201 ~~---~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~------~~-~~~~~~~~~r~~l~~~L~~~g~~ 269 (333)
T PRK10534 201 TP---VGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH------NV-ARLQEDHDNAAWLAEQLREAGAD 269 (333)
T ss_pred Cc---ccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh------hH-HHHHHHHHHHHHHHHHHHhCCCc
Confidence 64 78 5777 4555555555543321 223445555555532 11 22223444668999999999999
Q ss_pred eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 351 CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
+.++. ++|+|++++.. +..++ .++++++||.|+|+. ++|++.+. ++++++++++++|++++.
T Consensus 270 ~~~~~-~nfv~~~~~~~-------~~~~~-~~~l~~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 270 VMRQD-TNMLFVRVGEE-------QAAAL-GEYMRERNVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred cCCCC-ceEEEEECCch-------hHHHH-HHHHHHcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 88774 68999998731 12244 456667899999873 47887753 599999999999998775
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=259.34 Aligned_cols=282 Identities=15% Similarity=0.145 Sum_probs=205.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEc---cCCCcChHHHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLP---TPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~---~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
+.+|++.+|++++ ++++++++++|+++|+..++.+++++||.|+++ .|+|..|...++.. |++++.+
T Consensus 56 ~~~Le~~lA~~~g--------~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~-ga~~~~~- 125 (346)
T TIGR03576 56 EEKVQELGREHLG--------GPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLA-GAEYFES- 125 (346)
T ss_pred HHHHHHHHHHHcC--------CCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHc-CCEEecc-
Confidence 4566666666664 578999999999999999999999999999975 57898888888877 8886432
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+++.++. .+++++|+++ ++||+|.+++.+++++|+++|++||+++|+||+|+.++.......
T Consensus 126 --------~~l~~l~~--------~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~ 188 (346)
T TIGR03576 126 --------DELSELKK--------IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP 188 (346)
T ss_pred --------CCHHHHhh--------CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCC
Confidence 13444321 1256777774 679999999999999999999999999999999987543211111
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc-c-cCcHHHHHHHHHHhcCchhh
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~-~-~~s~~~q~~~~~~l~~~~~~ 322 (469)
+.... +..+++.|||| +++|+|+||+++++. +.+.+.+.... . +++++.|.++.++|+...
T Consensus 189 ~~~~~------------~~divv~s~SK--alaG~r~G~v~~~~~-li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~-- 251 (346)
T TIGR03576 189 PALDL------------GADLVVTSTDK--LMDGPRGGLLAGRKE-LVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE-- 251 (346)
T ss_pred CHHHc------------CCcEEEeccch--hccccceEEEEeCHH-HHHHHHHhhcCcccCccHHHHHHHHHHHhhcc--
Confidence 22211 22366779999 568999999999654 54555554433 2 257788888888886532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
.+..++.++++++.+.+.++. +.+.++.++ |+|++++.. ++.+++.++++++||.++||+.|. ..+
T Consensus 252 ---~~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~ 317 (346)
T TIGR03576 252 ---LSRIRDAFKRKEEVYLRLFDK--LNVERTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GAS 317 (346)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHh--CCCCcCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCC
Confidence 245577888888888887774 555555554 899998741 123577888999999999998884 346
Q ss_pred CeEEEEeecCCHH---HHHHHHHHHHHHH
Q 043923 403 GWFRVCFANMSED---TLKLSMQRLKAFV 428 (469)
Q Consensus 403 ~~iRi~~~~~~~e---~i~~~l~~L~~~l 428 (469)
+|+||+++. +++ ++++++++|++-+
T Consensus 318 ~~vRis~~~-~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 318 KTLRFDLAA-KDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred CeEEEEEec-ChHHhcCHHHHHHHHHhcc
Confidence 799999994 333 6999999987654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=253.81 Aligned_cols=321 Identities=15% Similarity=0.196 Sum_probs=235.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCE
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVE 159 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~ 159 (469)
..|.+..|+.+|+++++++++ .+++++|+|+++|+.+++.++++|||.| +++|+|..+...+... |.+
T Consensus 47 ~~Y~~~~g~~~Leeaia~~~g----------~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~-Ga~ 114 (431)
T cd00617 47 EAYAGSKSFYDLEDAVQDLFG----------FKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEAN-GAV 114 (431)
T ss_pred CccCCCCCHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhC-CCE
Confidence 359999999999999999996 4679999999999999999999999977 6899999998888777 999
Q ss_pred EEEeeccCCCC------c--ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEe
Q 043923 160 IVPIQCTSLNG------F--QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTMSRNELNLLVNIITEKNIHLISD 230 (469)
Q Consensus 160 ~~~v~~~~~~~------~--~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~~~~~iI~D 230 (469)
++.+++++..+ | ++|++.++++|++. ...++++|++++|+||+ |.+++.++++++.++|++||++||+|
T Consensus 115 pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~D 192 (431)
T cd00617 115 PVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLD 192 (431)
T ss_pred eEEEecccccccccccCCCCCcCHHHHHHHhCcc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 99999975432 4 49999999999751 01247899999999998 99999999999999999999999999
Q ss_pred ccccc--ccc-----CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcce------EEEEEecCHHHHHHHHH
Q 043923 231 EIYSG--TVF-----SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFR------VGAIYSNDDMVVAAATK 297 (469)
Q Consensus 231 eay~~--~~~-----~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlR------iG~li~~~~~~~~~~~~ 297 (469)
+++.. .+| ++....++.++ ++.+.|+||.+.+.|+| .||++++++.+.+.++.
T Consensus 193 aAr~~~na~~i~~r~~g~~~~si~ei--------------~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~ 258 (431)
T cd00617 193 AARFAENAYFIKEREEGYRDKSIAEI--------------AREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQ 258 (431)
T ss_pred chhhHhhhhhhhcccccccCCCHHHH--------------HHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHH
Confidence 99541 122 12222333322 33456777877777777 56999977656555543
Q ss_pred hc-------ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc
Q 043923 298 MS-------SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS 370 (469)
Q Consensus 298 ~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~ 370 (469)
.. .++..+.....+++..|.+... . +...++++ ++++|.+.|++.|+++..|.+|+|+|++.+.....
T Consensus 259 ~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~---~~l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~ 333 (431)
T cd00617 259 RVVLYEGFVTYGGMAGRDMEALAQGLREAVE-E---DYLRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPH 333 (431)
T ss_pred hccccCCccccccccHHHHHHHHHHHHhccc-H---HHHHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCC
Confidence 21 1222333333344435543211 1 22333444 44889999999999999999999999999864221
Q ss_pred C--ChhHHHHHHHHHHHhCCeEEeC-CCC-CC--CC-------CCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhcc
Q 043923 371 N--TFEAEMELWKKIVYDVKLNISP-GSS-CH--CT-------EPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 371 ~--~~~~~~~l~~~ll~~~GI~v~p-g~~-f~--~~-------~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
. ......+++.+|+++.||.+.. |+. ++ +. ....+|+++.. .+.++++...++|..+.++...
T Consensus 334 ~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~ 411 (431)
T cd00617 334 IPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED 411 (431)
T ss_pred CCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh
Confidence 1 1124668899999999998653 441 11 11 13579999965 3999999999999999987554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=248.00 Aligned_cols=301 Identities=15% Similarity=0.189 Sum_probs=209.0
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS 167 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (469)
+.++++.+|++++ .+.+++++|+++++..++.+++++||.|+++.+.|......++.. |++++.+|.+.
T Consensus 53 ~~~~~e~lA~~~g----------~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~-g~~~~~~~~~~ 121 (370)
T TIGR02539 53 IHDFLEDLAEFLG----------MDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERA-GLNVKEVPHTG 121 (370)
T ss_pred HHHHHHHHHHHhC----------CCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHc-CCEEEEEecCC
Confidence 5788888999886 345677999999999999999999999999988866655666666 99999999875
Q ss_pred CCCcccCHHHHHHHHHHHHhc-CCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 168 LNGFQITETAIEEAYQLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 168 ~~~~~~d~~~l~~~i~~~~~~-~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
+.+|.+|++++++++++.... ..++++|++++|+||||...+.+ +|+++|+++|+++|+||+|+.. ..+ .+.
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~---~i~~la~~~~~~livDea~~~g---~~~-~~~ 194 (370)
T TIGR02539 122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAG---KVAKVCREKGVPLLLNCAYTVG---RMP-VSA 194 (370)
T ss_pred cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHH---HHHHHHHHcCCeEEEECccccC---CcC-CCH
Confidence 567889999999998653211 12678999999999999988855 5788899999999999999842 111 121
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcH----------HHHHHHHHHh
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSS----------QTQYLLSALL 316 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~----------~~q~~~~~~l 316 (469)
.. .+..++++|+||+++ +|.|+||+++++. +.+.+.....++..+. ..+.++...+
T Consensus 195 ~~------------~~~di~v~s~sK~~~-~~g~~G~l~~~~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 260 (370)
T TIGR02539 195 KE------------IGADFIVGSGHKSMA-ASGPCGVLGMSEE-WEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASF 260 (370)
T ss_pred HH------------cCCCEEEeeCccccc-CCCCEEEEEECHH-HHhhhcccccCCccceeeeecccccccHHHHHHHHH
Confidence 11 134567799999998 6779999999655 4444443333221211 1333444444
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee--cCCceEEEEEecccccc--cCChhHHHHHHHHHHHhCCeE-E
Q 043923 317 SDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL--KSNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYDVKLN-I 391 (469)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~--~~~~g~~~~v~~~~~~~--~~~~~~~~~l~~~ll~~~GI~-v 391 (469)
.. . .++++...+.++.. +++.+.|+++|+++. .+..++|++++++.... .........+.+. |.++||. +
T Consensus 261 ~~--~-~~~l~~~~~~~~~~-~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~-L~e~GI~~i 335 (370)
T TIGR02539 261 PH--V-VERVKRWDEEVKKT-RWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEE-LKKRGIHGI 335 (370)
T ss_pred HH--H-HHHHHHHHHHHHHH-HHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHH-HHhCCCccc
Confidence 32 1 33444444555544 589999999998763 24456888898863210 0000112234444 4567997 6
Q ss_pred eCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 392 SPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 392 ~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+++ .++++|+++...+++++++++++|++++++.
T Consensus 336 r~~------~~~~iRis~~~~t~e~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 336 RSG------QTKYFKLSVYGLTKEQVEYVVDSFEEIVEEY 369 (370)
T ss_pred cCC------cceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 643 2468999974459999999999999988753
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=248.99 Aligned_cols=345 Identities=13% Similarity=0.096 Sum_probs=230.4
Q ss_pred CCCCeeeeeccc-ccc-ChHHHHHHHhcCCCccccccCCccccc-ccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 36 NPTGIIQMGLAE-NQL-SFDLLESWLDRNPDAAGFKRDGQSIFR-ELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 36 ~~~~~i~L~~~~-n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...++|||+.+. ..+ +++.+.+++.+.... .. ....|....|..++++++++++.+.++ . ++
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~----------~~~~~~~~~~~~G~~~l~~~l~~~la~~~g----~-~~ 104 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDS----------HGFGMASVRFICGTQDLHKELEEKLAKFLG----T-ED 104 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHH----------cCCCCcccccccCCcHHHHHHHHHHHHHhC----C-Cc
Confidence 345689999876 334 344455555442100 00 011222346788889988888887765 2 47
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|++|+| ++++..++.+++++||.|++++|+|+.+...+... |.+++.++. .|++++++.+++......++
T Consensus 105 ~i~~tsG-~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~-~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~ 175 (397)
T PRK06939 105 AILYSSC-FDANGGLFETLLGKEDAIISDALNHASIIDGVRLC-KAKRYRYAN-------NDMADLEAQLKEAKEAGARH 175 (397)
T ss_pred EEEEcCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhc-CCceEEeCC-------CCHHHHHHHHHhhhccCCCC
Confidence 7888888 67888889999999999999999999998888776 888887764 37788888886532222367
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|+..+.+||||...+ +++|+++|++||++||+||+|+...+.... ........ + ..+.+++++|+||
T Consensus 176 ~~v~~~~v~~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~-~~~~~~~~-~------~~~~~i~~~S~sK 244 (397)
T PRK06939 176 KLIATDGVFSMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENG-RGTVEHFG-V------MDRVDIITGTLGK 244 (397)
T ss_pred eEEEEecCcCCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCC-CCHHHHcC-C------CCCCcEEEEECHH
Confidence 77776667899998655 677999999999999999999632222211 11111111 0 2245789999999
Q ss_pred ccCCCcceEEEEEecCHHHHHHHHHh-ccc--c-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043923 273 DLGLPGFRVGAIYSNDDMVVAAATKM-SSF--G-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG 348 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~~~~~~~~~~-~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g 348 (469)
+++ |+|+||++++++.+ +.+... ..+ . ..++..+.++.++++.. . ...+.+++++++++++.+.|++++
T Consensus 245 ~~~--g~r~G~v~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~~~~~~~~~~~~~~~l~~~L~~~~ 317 (397)
T PRK06939 245 ALG--GASGGYTAGRKEVI-DWLRQRSRPYLFSNSLAPAIVAASIKVLELL---E-ESDELRDRLWENARYFREGMTAAG 317 (397)
T ss_pred HhC--ccCceEEEeCHHHH-HHHHHhCccccccCCCCHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHHHHHHHcC
Confidence 994 45999999965544 444332 221 1 12233344444444321 1 124667888899999999999988
Q ss_pred CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--CCCCeEEEEeec-CCHHHHHHHHHHHH
Q 043923 349 ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFAN-MSEDTLKLSMQRLK 425 (469)
Q Consensus 349 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--~~~~~iRi~~~~-~~~e~i~~~l~~L~ 425 (469)
+++.++.++++ ++.++.. .+..+++..++++ ||.+.++. |+. .+.+++|++++. .+++++++++++|+
T Consensus 318 ~~~~~~~~~~~-~~~~~~~------~~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~ 388 (397)
T PRK06939 318 FTLGPGEHPII-PVMLGDA------KLAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFE 388 (397)
T ss_pred CCcCCCCCCEE-EEEECCH------HHHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 87776666554 3444321 1234677777765 99998654 432 234689999976 59999999999999
Q ss_pred HHHHhh
Q 043923 426 AFVDSI 431 (469)
Q Consensus 426 ~~l~~~ 431 (469)
+++++.
T Consensus 389 ~~~~~~ 394 (397)
T PRK06939 389 KVGKEL 394 (397)
T ss_pred HHHHHh
Confidence 998764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=245.19 Aligned_cols=334 Identities=14% Similarity=0.161 Sum_probs=219.5
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
..+|+|+.|+++.|++.+.++++.... .....|+++ ...+|++++|++++ . +.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~a~~~~~~------------~~~~~~~~~-~~~~l~~~la~~~~--------~--~~~~~~ 61 (353)
T PLN02721 5 SRVVDLRSDTVTKPTDAMRAAMANAEV------------DDDVLGYDP-TALRLEEEMAKIFG--------K--EAALFV 61 (353)
T ss_pred hhhhhhhcccccCCCHHHHHHHHhccC------------CCcccCCCH-HHHHHHHHHHHHhC--------C--ceeEEe
Confidence 457999999999988888888765310 111223322 36999999999996 2 234555
Q ss_pred CChHHHHHHHHHHhcC-CCCEEEEccCCCcChHH---HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc-CCce
Q 043923 118 AGATSANETLMFCLAE-PGEAFLLPTPYYPGFDR---DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR-HLKV 192 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~-~gd~Vl~~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~-~~~~ 192 (469)
+++++++..++.+++. +||.|++++|+|..... .+... |++++.+|.+ .++.+|++.+++.+++.... .+++
T Consensus 62 ~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~ 138 (353)
T PLN02721 62 PSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTLG-GVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTT 138 (353)
T ss_pred cCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhhhc-CceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcc
Confidence 5556666677777777 99999999999865443 34555 9999999876 34678999999998732111 1378
Q ss_pred eEEEEecC-CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC--CccchhhhhhccccccCCcCCeEEEEcc
Q 043923 193 KGVLVTNP-SNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 193 ~~vvl~~P-~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++|+++++ +||||.+++.+++++|+++|+++|+++|+||+|. ++.. ...+...+.. ....++.|
T Consensus 139 ~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~---~~~~~~~~~~~~~~~~----------~~d~~~~s 205 (353)
T PLN02721 139 RLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI---FNASVALGVPVHRLVK----------AADSVSVC 205 (353)
T ss_pred eEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh---hcchhhhCCCHHHHhh----------hCCEEEEe
Confidence 89999875 7899999999999999999999999999999986 3221 0112222222 12233457
Q ss_pred CccccCCCcceEEE-EEecCHHHHHHHHHhcccc--cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043923 270 LSKDLGLPGFRVGA-IYSNDDMVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK 346 (469)
Q Consensus 270 ~SK~~g~~GlRiG~-li~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 346 (469)
+||+++. ++|+ +++ ++.+.+.+....... .++...+.++..+.. + +++.+..+ +..++++.+.+.|++
T Consensus 206 ~sK~l~~---~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~~~~-~~~~~~~~l~~~L~~ 276 (353)
T PLN02721 206 LSKGLGA---PVGSVIVG-SKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA---L-QENVPKLE-DDHKKAKLLAEGLNQ 276 (353)
T ss_pred cccccCC---ceeeEEec-CHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH---H-HHHHHHHH-HHHHHHHHHHHHHHh
Confidence 9999873 3576 455 455544443333221 122222222222211 1 22333333 334567889999988
Q ss_pred c-CCce-ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHH
Q 043923 347 A-GISC-LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 423 (469)
Q Consensus 347 ~-g~~v-~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~ 423 (469)
+ ++.+ ..+..++|+|++++.... .+..+++++|. ++||.++|+. ++++|++++. .+++++++++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~~ 345 (353)
T PLN02721 277 IKGLRVNVAAVETNIVYFDITDGSR----ITAEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQISDSDVQYTLSC 345 (353)
T ss_pred CCCcEEecCCccceEEEEEccCCcc----ccHHHHHHHHH-hCCcEEecCC------CceEEEEecCcCCHHHHHHHHHH
Confidence 7 6754 333345679999874210 12235666665 7799999874 4589999973 599999999999
Q ss_pred HHHHHHh
Q 043923 424 LKAFVDS 430 (469)
Q Consensus 424 L~~~l~~ 430 (469)
|++++..
T Consensus 346 l~~~~~~ 352 (353)
T PLN02721 346 FQQAALT 352 (353)
T ss_pred HHHHhhc
Confidence 9998764
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=244.59 Aligned_cols=339 Identities=13% Similarity=0.094 Sum_probs=227.2
Q ss_pred CCCCeeeeecccc-ccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCC---Cc----HHHHHHHHHHHHhHcCCC
Q 043923 36 NPTGIIQMGLAEN-QLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYH---GL----PAFKKALVEFMSEIRGNK 106 (469)
Q Consensus 36 ~~~~~i~L~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~----~~Lr~aia~~l~~~~~~~ 106 (469)
...++|+|+.+.. .++ ++.+.++..+... .....|++.. |. .+|++++|++++
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~------------~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g------ 97 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALD------------EHGFGMSSVRFICGTQDIHKELEAKIAAFLG------ 97 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHH------------HhCCCCCCcCcccCChHHHHHHHHHHHHHhC------
Confidence 3457899999964 233 3444444333210 0012344333 54 889999999986
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 107 VTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 107 ~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
.+++++++|+++|+..++.+++++||.|+++.|.|+.+...+... +.+.+.++ .+|++++++.+++..
T Consensus 98 ----~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~-~~~~~~~~-------~~d~~~l~~~i~~~~ 165 (393)
T TIGR01822 98 ----TEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYA-------NNDMADLEAQLKEAR 165 (393)
T ss_pred ----CCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhc-CCceEEeC-------CCCHHHHHHHHHhhh
Confidence 356788889999999999999999999999999999998877766 77665543 258899999887543
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
....++++|++.+++||||.+.+ +++|+++|++||+++|+||+|+...++ ....+...... + ..+.+++
T Consensus 166 ~~~~~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~-~~~~~~~~~~~-~------~~~~di~ 234 (393)
T TIGR01822 166 AAGARHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLG-PTGRGSHELCG-V------MGRVDII 234 (393)
T ss_pred hcCCCceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcC-CCCCchHHhcC-C------CCCCeEE
Confidence 22336788888888999999987 566888999999999999999633222 21122222211 0 1245688
Q ss_pred EccCccccCCCcceEEEEEecCHHHHHHHHHh-ccc--c-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSF--G-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVS 342 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 342 (469)
++|+||++ +|+|+||+++++. +.+.+... ..+ . +.++..+.++.++++.. +..++.+++++++++++.+
T Consensus 235 ~~s~sK~l--~g~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~l~~ 307 (393)
T TIGR01822 235 TGTLGKAL--GGASGGFTTARKE-VVELLRQRSRPYLFSNSLPPAVVGASIKVLEML----EASNELRDRLWANTRYFRE 307 (393)
T ss_pred EEEChHHh--hCCCcEEEEeCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHH
Confidence 99999987 4679999998654 44444332 222 1 12333333444444221 1245677888999999999
Q ss_pred HHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--CCCCeEEEEeecC-CHHHHHH
Q 043923 343 GLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANM-SEDTLKL 419 (469)
Q Consensus 343 ~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--~~~~~iRi~~~~~-~~e~i~~ 419 (469)
.|++.|+++.++.+ .++.+.++.. .+..+++..|++ +||.+. +..|.. .+..++|++++.. +++++++
T Consensus 308 ~L~~~g~~~~~~~~-~~~~i~~~~~------~~~~~l~~~L~~-~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~ 378 (393)
T TIGR01822 308 RMEAAGFDIKPADH-PIIPVMLYDA------VLAQRFARRLLE-EGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDR 378 (393)
T ss_pred HHHHcCCCCCCCCC-CEEEEEeCCH------HHHHHHHHHHHH-CCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHH
Confidence 99988887765555 3555554421 123467777765 499998 554532 2335799999764 8999999
Q ss_pred HHHHHHHHHHhh
Q 043923 420 SMQRLKAFVDSI 431 (469)
Q Consensus 420 ~l~~L~~~l~~~ 431 (469)
++++|++++++.
T Consensus 379 ~~~~l~~~~~~~ 390 (393)
T TIGR01822 379 AVEAFTRIGREL 390 (393)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=243.37 Aligned_cols=338 Identities=13% Similarity=0.109 Sum_probs=225.8
Q ss_pred CCCCeeeeeccccccC---hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 36 NPTGIIQMGLAENQLS---FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
....+|||+.| +++. ++.+.+++.+....... + .......|+......+++++++++++ .++
T Consensus 14 ~g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~~~---~--~~~~~~~~g~~~~~~~l~~~la~~~~---------~~~ 78 (360)
T TIGR00858 14 DGRRLLNFSSN-DYLGLASHPEVIQAAQQGAEQYGA---G--STASRLVSGNSPLHEELEEELAEWKG---------TEA 78 (360)
T ss_pred CCceEEecccC-CcccCCCCHHHHHHHHHHHHhcCC---C--CCCcCcccCCcHHHHHHHHHHHHHhC---------CCC
Confidence 34568999998 4432 25566666553110000 0 00000012222234568888888774 357
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
.|++++|+++.+ .++.+++++||.|+++.|+|..+...+... |++++.++. +|++.+++.+++. .++++
T Consensus 79 ~i~~~~G~~~~~-~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~~~~~--~~~~~ 147 (360)
T TIGR00858 79 ALLFSSGYLANV-GVISALVGKGDLILSDALNHASLIDGCRLS-GARVRRYRH-------NDVEHLERLLEKN--RGERR 147 (360)
T ss_pred EEEECchHHHHH-HHHHHhCCCCCEEEEEccccHHHHHHHHhc-CCceEEecC-------CCHHHHHHHHHHc--ccCCC
Confidence 888888865555 567788899999999999999998888877 999888763 4788898888642 11256
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|++++++||||...+ +++|.++|+++|++||+||+|..+.++... .+...... + +..+++++++|+||
T Consensus 148 ~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~-~-----~~~~~~i~i~s~sK 217 (360)
T TIGR00858 148 KLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDG-RGTLEHFG-L-----KPEPVDIQVGTLSK 217 (360)
T ss_pred eEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCC-CchHHhcC-C-----CccCCcEEEEechh
Confidence 88888889999998877 555888899999999999999865444321 22222211 0 12367899999999
Q ss_pred ccCCCcceEEEEEecCHHHHHHHHHh-ccc--c-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043923 273 DLGLPGFRVGAIYSNDDMVVAAATKM-SSF--G-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG 348 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~~~~~~~~~~-~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g 348 (469)
+||++| ||++++++ +.+.+... ..+ . ..++..+.++.++++... ..+..+++++++++++.+.|++++
T Consensus 218 ~~~~~g---G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~~l~~~L~~~~ 289 (360)
T TIGR00858 218 ALGSYG---AYVAGSQA-LIDYLINRARTLIFSTALPPAVAAAALAALELIQ----EEPWRREKLLALIARLRAGLEALG 289 (360)
T ss_pred hhhccC---cEEEcCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999766 99998554 44433322 221 1 234444445555553221 234567889999999999999988
Q ss_pred CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHHHH
Q 043923 349 ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRLK 425 (469)
Q Consensus 349 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~~~~~iRi~~~~-~~~e~i~~~l~~L~ 425 (469)
+++.++ +++++|+.++.. .+..++.+.++ ++||.+.++..++. .+++++||+++. .+++++++++++|+
T Consensus 290 ~~~~~~-~~~~~~~~~~~~------~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 290 FTLMPS-CTPIVPVIIGDN------ASALALAEELQ-QQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CccCCC-CCCEEEEEeCCH------HHHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 877654 457899988642 12345666665 56999998766543 235689999986 48999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=229.97 Aligned_cols=362 Identities=17% Similarity=0.271 Sum_probs=265.2
Q ss_pred cccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccc--cccC----hHHHHHHHhcCCCccccccCCcccccccccCC
Q 043923 10 CNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAE--NQLS----FDLLESWLDRNPDAAGFKRDGQSIFRELALFQ 83 (469)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~--n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 83 (469)
+....+.+|++.=... |....++ +-|||++|. +.-. .+.++++-+...+. .....|-
T Consensus 4 ~i~~~p~DpIlgL~e~-----f~~D~R~-~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~-----------~~~k~Yl 66 (396)
T COG1448 4 KIEAAPADPILGLKEA-----FKADPRP-NKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQ-----------EKTKNYL 66 (396)
T ss_pred ccccCCCCchhHHHHH-----HhcCCCc-CeeeeeeeeeeCCCCCcchhHHHHHHHHHhhcc-----------ccccccC
Confidence 3445677777755333 4444444 449999983 2222 24455555544322 3456799
Q ss_pred CCCCcHHHHHHHHHHHHhHcCCCCC-CCCCcE--EEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC
Q 043923 84 DYHGLPAFKKALVEFMSEIRGNKVT-FDTSKI--VLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV 158 (469)
Q Consensus 84 ~~~g~~~Lr~aia~~l~~~~~~~~~-~~~~~i--~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~ 158 (469)
+..|.+.+.+++++++- |...+ +..+.| +-|.|+|.||.+....+. .+..+|.+++|+|+.+..++... |.
T Consensus 67 ~i~G~~~f~~~~~~llF---G~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~a-Gl 142 (396)
T COG1448 67 PIEGLPEFLEAVQKLLF---GADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAA-GL 142 (396)
T ss_pred CcCCcHHHHHHHHHHhc---CCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhc-CC
Confidence 99999999999999973 31111 233343 469999999999987763 45678999999999999999988 99
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe-cCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT-NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~-~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
++..+|+-...+-.+|++.+...|++.+ ...+|++- ..|||||.-++.++|++|+++.++.+.+.+.|-||.+
T Consensus 143 ~v~~Y~Yyd~~~~~~df~~mla~L~~a~----~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQG-- 216 (396)
T COG1448 143 EVETYPYYDAETKGLDFDGMLADLKTAP----EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQG-- 216 (396)
T ss_pred ceeeeeccccccccccHHHHHHHHHhCC----CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhh--
Confidence 9999998544455689999998887642 33334443 3499999999999999999999999999999999998
Q ss_pred cCCC---CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEE--ecCHHHHHHH-HH-----hcccccCcH
Q 043923 238 FSSP---GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIY--SNDDMVVAAA-TK-----MSSFGLVSS 306 (469)
Q Consensus 238 ~~~~---~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li--~~~~~~~~~~-~~-----~~~~~~~s~ 306 (469)
|+.. +...+..++. ....++++.||||.||+.|-|+|++. +.+....+.+ .+ ...+.+++.
T Consensus 217 F~~GleeDa~~lR~~a~--------~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~ 288 (396)
T COG1448 217 FADGLEEDAYALRLFAE--------VGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPA 288 (396)
T ss_pred hccchHHHHHHHHHHHH--------hCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCch
Confidence 4432 2233333433 22448899999999999999999874 4444433322 21 234455666
Q ss_pred HHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHH
Q 043923 307 QTQYLLSALLSDKKFT---QNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
....+++.+|.++++- ...+..+++++.+.|..|.+.|++. .+.++..+.|||.+..+.. +.
T Consensus 289 ~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~-----------~Q 357 (396)
T COG1448 289 HGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSP-----------EQ 357 (396)
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCH-----------HH
Confidence 7888899999987643 4456678999999999999999984 4788889999999876653 45
Q ss_pred HHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 380 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+.+|.+++||.+... | |+|++.+++..++.+.++|.++
T Consensus 358 V~rLree~~IY~v~s--------G--Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 358 VDRLREEFGIYLVAS--------G--RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred HHHHHHhccEEEecC--------C--eeeeccCChhhHHHHHHHHHhh
Confidence 778899999998732 2 9999999999999999999875
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=245.98 Aligned_cols=341 Identities=13% Similarity=0.131 Sum_probs=228.7
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC-CCCcEEEe
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF-DTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~-~~~~i~~t 117 (469)
+.|-|+.+.-.+.+..+.+++.+........+.. ............+.++|+++|++++ + ++++|++|
T Consensus 19 ~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~la~~~g--------~~~~~~i~~~ 87 (401)
T PRK10874 19 AGVYLDSAATALKPQAVIEATQQFYSLSAGNVHR---SQFAAAQRLTARYEAAREQVAQLLN--------APDAKNIVWT 87 (401)
T ss_pred ceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCC---cccHHHHHHHHHHHHHHHHHHHHcC--------CCCCCEEEEE
Confidence 4688887766665555555555431100000000 0000000001235788888999886 4 68899999
Q ss_pred CChHHHHHHHHHHh----cCCCCEEEEccCCCcC----hHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 118 AGATSANETLMFCL----AEPGEAFLLPTPYYPG----FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 118 ~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+|+++++..++.++ +++||.|++++|.|++ +...++.. |++++.++.+. ++.+|++++++.+++
T Consensus 88 ~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~~v~~v~~~~--~~~~d~~~l~~~i~~----- 159 (401)
T PRK10874 88 RGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQT-GAKVVKLPLGA--DRLPDVDLLPELITP----- 159 (401)
T ss_pred CCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHh-CCEEEEEecCC--CCcCCHHHHHHhcCc-----
Confidence 99999999999998 3789999999999865 33445555 99999999863 467899999998865
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++++|++++|+||||.+++.+ +|+++|+++|+++|+|++|+...+ + .++.. .+..+++.|
T Consensus 160 -~t~lv~i~~~~n~tG~~~~~~---~i~~l~~~~g~~~ivD~a~~~g~~---~-~~~~~------------~~~d~~~~s 219 (401)
T PRK10874 160 -RTRILALGQMSNVTGGCPDLA---RAITLAHQAGMVVMVDGAQGAVHF---P-ADVQA------------LDIDFYAFS 219 (401)
T ss_pred -CcEEEEEeCCcccccCcCCHH---HHHHHHHHcCCEEEEECCcccccc---c-CCchh------------cCCCEEEEe
Confidence 889999999999999999855 588888899999999999963212 1 12211 135577889
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhc-----------------------ccccCcHHHHHHHHHHhcCchhhHHHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----------------------SFGLVSSQTQYLLSALLSDKKFTQNYI 326 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----------------------~~~~~s~~~q~~~~~~l~~~~~~~~~~ 326 (469)
++|.+|.+| +||++++++.+.. +.... ..++.+.+.+.++.+++.... +...
T Consensus 220 ~~K~~gp~G--~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~--~~g~ 294 (401)
T PRK10874 220 GHKLYGPTG--IGVLYGKSELLEA-MSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLA--DIDI 294 (401)
T ss_pred cccccCCCc--cEEEEEchHHHhc-CCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHH--HhCH
Confidence 999988666 6999886554332 21110 012334444444444443211 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC------
Q 043923 327 SENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC------ 399 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~------ 399 (469)
...+++.++.++++.+.|+++ |+.+..+..+.++++.+++. +..++.+. |.++||.+++|..+..
T Consensus 295 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------~~~~~~~~-L~~~gI~v~~g~~~~~~~~~~~ 366 (401)
T PRK10874 295 NQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------HHSDLVTL-LAEYGIALRAGQHCAQPLLAAL 366 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------CHHHHHHH-HHHCCcEEeccccchHHHHHHh
Confidence 345667777788899999887 88777655556777776531 11245544 4577999999986642
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 400 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 400 ~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
...+++|+|++. .+++|+++++++|+++++..
T Consensus 367 g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 367 GVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 125799999986 48999999999999988754
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=246.46 Aligned_cols=349 Identities=12% Similarity=0.101 Sum_probs=234.1
Q ss_pred CCCeeeeecc------cccc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 37 PTGIIQMGLA------ENQL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 37 ~~~~i~L~~~------~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
...+|||+++ ++.. +++.+.+++.+..... -..-..|+...++.+|++++|++++
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~---------~~sr~~~g~~~~~~ele~~lA~~~g--------- 160 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSAST---------CSSRVDGGTTKLHRELEELVARFVG--------- 160 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCC---------CccccccCCcHHHHHHHHHHHHHhC---------
Confidence 4567888875 2221 2355666666642110 0122347777889999999999996
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc-
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR- 188 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~- 188 (469)
.++.|++++|... ...++.+++++||.|++++|+|..+...++.. |++++.++.+ |++++++.+++....
T Consensus 161 ~~~ai~~~~G~~a-n~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~-Ga~v~~~~~~-------d~~~le~~l~~~i~~~ 231 (489)
T PLN02483 161 KPAAIVFGMGYAT-NSTIIPALIGKGGLIISDSLNHNSIVNGARGS-GATIRVFQHN-------TPSHLEEVLREQIAEG 231 (489)
T ss_pred CCcEEEECCHHHH-HHHHHHHhCCCCCEEEEcchhhHHHHHHHHHc-CCeEEEEeCC-------CHHHHHHHHHhhhhcc
Confidence 4677888777554 44677889999999999999999999888877 9999999854 456677666542110
Q ss_pred CC-----ceeEEEEecC-CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCC
Q 043923 189 HL-----KVKGVLVTNP-SNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN 262 (469)
Q Consensus 189 ~~-----~~~~vvl~~P-~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 262 (469)
.+ ..++++++++ .|++|.+.+ +++|+++|++||++||+||+|+...++ .......++..- +..+
T Consensus 232 ~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G-~~G~g~~~~~~v------~~~~ 301 (489)
T PLN02483 232 QPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVG-KTGRGVCELLGV------DPAD 301 (489)
T ss_pred ccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccC-CCCCchHHhcCC------Cccc
Confidence 11 2366666666 589999887 555888999999999999999743332 211122222210 1235
Q ss_pred eEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-c--cc-cCcHHHHHHHHHHh---cCchhhHHHHHHHHHHHHH
Q 043923 263 RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-S--FG-LVSSQTQYLLSALL---SDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 263 ~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-~--~~-~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~l~~ 335 (469)
.+|+++||||+||++| ||++++++ +.+.+.... . +. ..+++...++.+.| ...+. .+...++++++++
T Consensus 302 ~dI~~~SfSKs~g~~G---G~i~~~~~-li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g-~~~~~~~~~~l~~ 376 (489)
T PLN02483 302 VDIMMGTFTKSFGSCG---GYIAGSKE-LIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDG-TNRGAQKLAQIRE 376 (489)
T ss_pred CcEEEEecchhcccCc---eEEEcCHH-HHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHH
Confidence 7899999999999887 99998554 445454432 1 22 12333222233333 21110 1224556788999
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC--CCCCCeEEEEeec-C
Q 043923 336 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH--CTEPGWFRVCFAN-M 412 (469)
Q Consensus 336 ~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~--~~~~~~iRi~~~~-~ 412 (469)
+++++.+.|+++|+++.++.+++.+|+.+.... ...+++..|+ ++||.+.| ..|. +...+.+|++++. .
T Consensus 377 ~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~------~~~~~~~~Ll-~~GI~v~~-~~fp~~p~~~~~vRi~isa~~ 448 (489)
T PLN02483 377 NSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPA------KIPAFSRECL-KQNVAVVV-VGFPATPLLLARARICISASH 448 (489)
T ss_pred HHHHHHHHHHHCCCcccCCCCCCEEEEEECCHH------HHHHHHHHHH-HCCcEEee-eCCCCCCCCCceEEEEeCCCC
Confidence 999999999999988876666677777654321 2235677777 46999997 4443 2334789999986 5
Q ss_pred CHHHHHHHHHHHHHHHHhhcccc
Q 043923 413 SEDTLKLSMQRLKAFVDSITTTL 435 (469)
Q Consensus 413 ~~e~i~~~l~~L~~~l~~~~~~~ 435 (469)
+++++++++++|+++++..+-+.
T Consensus 449 t~edId~~l~~L~~~~~~~~~~~ 471 (489)
T PLN02483 449 SREDLIKALEVISEVGDLVGIKY 471 (489)
T ss_pred CHHHHHHHHHHHHHHHHHhCcee
Confidence 99999999999999988776644
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=248.62 Aligned_cols=354 Identities=12% Similarity=0.135 Sum_probs=242.2
Q ss_pred CCeeeeecccc-cc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 38 TGIIQMGLAEN-QL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
.++|||+.+.. .+ .++.+.+++.+..... |...-..-..|++..++.+|+++||++++ .++.|+
T Consensus 109 ~~~id~~s~~~lgl~~~~~i~ea~~~al~~~-----G~g~~g~r~~yg~~~~~~~Lee~La~~~~---------~~~~i~ 174 (481)
T PLN02822 109 KDVVNFASANYLGLIGNEKIKESCTSALEKY-----GVGSCGPRGFYGTIDVHLDCETKIAKFLG---------TPDSIL 174 (481)
T ss_pred ceEEEeECCCcCCCCCCHHHHHHHHHHHHHh-----CCCCcccCccccCHHHHHHHHHHHHHHhC---------CCCEEE
Confidence 46799997743 22 3455555555431110 00000011136677779999999999996 467899
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc---CCce
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR---HLKV 192 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~---~~~~ 192 (469)
+++|.+ ++..++.+++++||.|++....|..+...+... |.+++.++.+ |.+.++..+++.... .+++
T Consensus 175 ~s~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls-~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~ 245 (481)
T PLN02822 175 YSYGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLS-RSTIVYFKHN-------DMESLRNTLEKLTAENKRKKKL 245 (481)
T ss_pred ECCHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHc-CCeEEEECCC-------CHHHHHHHHHHHhhhhcccCCC
Confidence 998887 578899999999999998888777777777766 8999988865 445666666543221 1234
Q ss_pred -eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 193 -KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 193 -~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
++|++..++|+||.+.+ +++|+++|++||+++|+||+|+...++... ....+... + ...+.++++.|||
T Consensus 246 ~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G-~G~~e~~~-v-----~~~~~dii~~s~s 315 (481)
T PLN02822 246 RRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSG-RGLSEHFG-V-----PIEKIDIITAAMG 315 (481)
T ss_pred cEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCC-CChHHHcC-C-----CCCCCeEEEecch
Confidence 68888888999999999 566999999999999999999855555322 12222211 0 0125678899999
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHhc-c--cc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKMS-S--FG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~~-~--~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
|+||++| ||+++++. +.+.+.... . ++ ..++..+.++.++|+.. +. ..+.+++++++++++.+.|++.
T Consensus 316 Kalg~~G---G~i~g~~~-ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l---~~-~~~~~~~l~~~~~~l~~~L~~~ 387 (481)
T PLN02822 316 HALATEG---GFCTGSAR-VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---ED-NPSVLAKLKENIALLHKGLSDI 387 (481)
T ss_pred hhhhhCC---eEEEcCHH-HHHHHHhcCCceeeccccCHHHHHHHHHHHHHH---Hh-CHHHHHHHHHHHHHHHHHHHhc
Confidence 9999889 99999655 444443322 2 22 12355666666666332 22 2567788999999999999987
Q ss_pred -CCceecCCceEEEEEeccccccc--CChhHHHHHHHHHHHhCCeEEeCCC--CCCCC-CCCeEEEEeec-CCHHHHHHH
Q 043923 348 -GISCLKSNAGLFCWVDMRHLLRS--NTFEAEMELWKKIVYDVKLNISPGS--SCHCT-EPGWFRVCFAN-MSEDTLKLS 420 (469)
Q Consensus 348 -g~~v~~~~~g~~~~v~~~~~~~~--~~~~~~~~l~~~ll~~~GI~v~pg~--~f~~~-~~~~iRi~~~~-~~~e~i~~~ 420 (469)
|+++..+.+++++++.+++.... .+.....+++.++++++||.+.|+. .|+.. .+.++|++++. +++++|+++
T Consensus 388 ~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~ 467 (481)
T PLN02822 388 PGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKA 467 (481)
T ss_pred CCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHH
Confidence 88887777889999998642110 1111235678888878899999773 34321 24579999875 599999999
Q ss_pred HHHHHHHHHhhc
Q 043923 421 MQRLKAFVDSIT 432 (469)
Q Consensus 421 l~~L~~~l~~~~ 432 (469)
+++|++++++.-
T Consensus 468 ~~~l~~~~~~~~ 479 (481)
T PLN02822 468 SESLKRVAASVL 479 (481)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=230.86 Aligned_cols=322 Identities=17% Similarity=0.235 Sum_probs=216.1
Q ss_pred cccccC-CCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChH-HHHHHHHH-Hh----cC--------CCCEEEEc
Q 043923 77 RELALF-QDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGAT-SANETLMF-CL----AE--------PGEAFLLP 141 (469)
Q Consensus 77 ~~~~~Y-~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~-~al~~~~~-~l----~~--------~gd~Vl~~ 141 (469)
.+.++| +...|++++|+..|+.++ +++++|++...++ ..|+-++. ++ .. +.-+.++|
T Consensus 59 ~D~RNY~G~l~Gipe~r~l~a~llg--------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP 130 (425)
T PF12897_consen 59 TDCRNYPGGLDGIPEARELFAELLG--------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP 130 (425)
T ss_dssp EBTTSS-S-SS--HHHHHHHHHHHT--------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred ccccCCCCccCChHHHHHHHHHHhC--------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence 467899 889999999999999997 7899999866554 44443332 22 11 12479999
Q ss_pred cCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecC--CCCCCCCCCHHHHHHHHHH
Q 043923 142 TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNP--SNPLGTTMSRNELNLLVNI 219 (469)
Q Consensus 142 ~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P--~NPtG~~~s~e~l~~l~~~ 219 (469)
.|.|..+..+++.. |++.++||+++++ +|++.+++.+.+ ++.+|.++ |.| +||||.++|.|..++|+.+
T Consensus 131 vPGYDRHFai~E~~-Giemi~VpM~~dG---PDmD~Ve~LV~~----D~svKGiW-cVP~ySNPtG~tySde~vrrlA~m 201 (425)
T PF12897_consen 131 VPGYDRHFAITEHF-GIEMIPVPMTEDG---PDMDMVEELVAE----DPSVKGIW-CVPKYSNPTGITYSDEVVRRLAAM 201 (425)
T ss_dssp ES--HHHHHHHHHC-T-EEEEEEEETTE---E-HHHHHHHTHT----STTEEEEE-E-SSS-TTT-----HHHHHHHHHS
T ss_pred CCCchHHHHHHHhh-CcEEEecCCCCCC---CCHHHHHHHHhc----CCccceEE-eCCCccCCCCccCCHHHHHHHhcC
Confidence 99999999999887 9999999998765 899999988753 56888754 345 8999999999999999997
Q ss_pred -HHhcCeEEEEecccccccc-CCCCc---cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH
Q 043923 220 -ITEKNIHLISDEIYSGTVF-SSPGF---VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA 294 (469)
Q Consensus 220 -~~~~~~~iI~Deay~~~~~-~~~~~---~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~ 294 (469)
+...++.|+.|.+|+-..+ +.... ..+.+... .++.+++++.+.|.||.. +||.+++++.++...+...
T Consensus 202 ~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~-----~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~ 275 (425)
T PF12897_consen 202 KTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACA-----KAGNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWI 275 (425)
T ss_dssp --SSTT-EEEEE-TTTT-BSSSSSS------HHHHHH-----HTT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHH
T ss_pred CcCCcCeEEEeecCceEeeccccccchhhhHHHHHHH-----HcCCCCeEEEEecccccc-cCCcceeeeecCHHHHHHH
Confidence 4467999999999986555 22221 24444433 356889999999999987 6999999999977776655
Q ss_pred HHHhccc-ccCcHHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHhc-C----C-ceecCCceEEEEEeccc
Q 043923 295 ATKMSSF-GLVSSQTQYLLSALLSDKK-FTQNYISENKKRLKQRHRKLVSGLEKA-G----I-SCLKSNAGLFCWVDMRH 366 (469)
Q Consensus 295 ~~~~~~~-~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~l~~~L~~~-g----~-~v~~~~~g~~~~v~~~~ 366 (469)
.+.+... ....-+.|..-.+++.+.+ -+..+++++++.++-+++.+.+.|++. | + +|..|.||+|+++++.+
T Consensus 276 ~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~ 355 (425)
T PF12897_consen 276 KKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD 355 (425)
T ss_dssp HHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST
T ss_pred HHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC
Confidence 4443322 2367799999999999976 568899999999998888888877654 3 3 89999999999999986
Q ss_pred ccccCChhHHHHHHHHHHHhCCeEEeC-CCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 367 LLRSNTFEAEMELWKKIVYDVKLNISP-GSSCHCT---EPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 367 ~~~~~~~~~~~~l~~~ll~~~GI~v~p-g~~f~~~---~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+.. ....+++++.||.+.| |..|... .+..|||+.+..+.+|++.+++.+.-+++
T Consensus 356 G~A--------krvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 356 GTA--------KRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp T-H--------HHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred ChH--------HHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 543 3456678899999988 6666532 25689999998899999999999987654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=240.38 Aligned_cols=321 Identities=16% Similarity=0.134 Sum_probs=217.6
Q ss_pred cccc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHH
Q 043923 47 ENQL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANE 125 (469)
Q Consensus 47 ~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~ 125 (469)
+|++ |++.+.+++.+... ....|.+.....++++.++++++ ++++++++|+++++.
T Consensus 5 ~~~~~~~~~v~~a~~~~~~-------------~~~~~~~~~~~~~l~~~~a~~~g----------~~~~~~~~~gt~a~~ 61 (338)
T cd06502 5 DTVTGPTPEMLEAMAAANV-------------GDDVYGEDPTTAKLEARAAELFG----------KEAALFVPSGTAANQ 61 (338)
T ss_pred ccCCCCCHHHHHHHHhccc-------------CCcccCCCHHHHHHHHHHHHHhC----------CCeEEEecCchHHHH
Confidence 3444 56777777765311 11256555667888888888874 456777788889999
Q ss_pred HHHHHhcCCCCEEEEccCCCcChHH---HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh-cCCceeEEEEecCC
Q 043923 126 TLMFCLAEPGEAFLLPTPYYPGFDR---DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK-RHLKVKGVLVTNPS 201 (469)
Q Consensus 126 ~~~~~l~~~gd~Vl~~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~~vvl~~P~ 201 (469)
.++.+++++||.|+++.|+|..+.. ..... |++++.++.+. +.+|++++++++++... ..+++++|+++||+
T Consensus 62 ~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~ 137 (338)
T cd06502 62 LALAAHTQPGGSVICHETAHIYTDEAGAPEFLS-GVKLLPVPGEN---GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTT 137 (338)
T ss_pred HHHHHhcCCCCeEEEecCcceeeecCCcHHHHc-CceEEeecCCC---CcCCHHHHHHHhhccCCCcCCcceEEEEEeec
Confidence 9999999999999999999876442 23345 99999998752 56899999998864110 01268899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE
Q 043923 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV 281 (469)
Q Consensus 202 NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi 281 (469)
|| |.+++.+++++|+++|++||+++|+||+|......... .+...+.. +..+++.|+||+||++|
T Consensus 138 n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~-~~~~~~~~----------~~d~~~~s~sK~~~~~~--- 202 (338)
T cd06502 138 EG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALG-VALKTYKS----------GVDSVSFCLSKGGGAPV--- 202 (338)
T ss_pred CC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcC-CCHHHHHh----------cCCEEEEeccccCCCcc---
Confidence 97 66779999999999999999999999998642211111 12222211 22355779999999887
Q ss_pred EEEEecCHHHHHHHHHhc-cc---ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce
Q 043923 282 GAIYSNDDMVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 357 (469)
Q Consensus 282 G~li~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g 357 (469)
|+++..++.+.+.+.... .+ +..+.+.+.++...|+...+ .+..+++.++++++.+.|+++|+.+.++.+
T Consensus 203 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 276 (338)
T cd06502 203 GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLW-----LRRLRHDHEMARRLAEALEELGGLESEVQT- 276 (338)
T ss_pred ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHHhcCCCcccccC-
Confidence 555433444544444332 11 22456677777777776543 234456666778999999998887666665
Q ss_pred EEEEEecccccccCChhHHHHHHHHHH--HhCCeEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHHHH
Q 043923 358 LFCWVDMRHLLRSNTFEAEMELWKKIV--YDVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRLKA 426 (469)
Q Consensus 358 ~~~~v~~~~~~~~~~~~~~~~l~~~ll--~~~GI~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~~ 426 (469)
.|+.+.++.. . .....+..++. .++||.+.+.. .+++|++++.. ++++++++++++++
T Consensus 277 ~~~~v~~~~~---~--~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 277 NIVLLDPVEA---N--AVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CeEEEecCCc---c--HHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 4555666421 0 11112333332 15699987652 26899999874 89999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=241.53 Aligned_cols=331 Identities=13% Similarity=0.144 Sum_probs=226.0
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCC-------CCcHHHHHHHHHHHHhHcCCCCCC-C
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDY-------HGLPAFKKALVEFMSEIRGNKVTF-D 110 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-------~g~~~Lr~aia~~l~~~~~~~~~~-~ 110 (469)
+.|-|+.+.-.++|..+.+++.+.... ......+... ..+.++|+++|++++ . +
T Consensus 16 ~~iyld~a~~~~~p~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--------~~~ 77 (398)
T TIGR03392 16 GTVYLDSAATALKPQAVIDATQQFYRL----------SSGTVHRSQHQQAQSLTARYELARQQVARFLN--------APD 77 (398)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHh----------cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhC--------CCC
Confidence 468888776555555566655443110 0000011111 235678999999986 4 4
Q ss_pred CCcEEEeCChHHHHHHHHHHh----cCCCCEEEEccCCCcC----hHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHH
Q 043923 111 TSKIVLTAGATSANETLMFCL----AEPGEAFLLPTPYYPG----FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAY 182 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 182 (469)
+++|++|+|+++++..++.++ +++||.|++++|.|+. +...++.. |++++.+|++. ++.+|++++++++
T Consensus 78 ~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~-g~~v~~v~~~~--~~~~~~~~l~~~i 154 (398)
T TIGR03392 78 AENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQT-GAKVVKLPIGA--DLLPDIRQLPELL 154 (398)
T ss_pred CCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHc-CcEEEEEecCC--CCCcCHHHHHHHh
Confidence 789999999999999999987 4789999999999866 33445556 99999999874 4568899999988
Q ss_pred HHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCC
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN 262 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 262 (469)
++ ++++|++++|+||||.+++.+ +|+++|+++|+++|+|++|+...+ + ..+..+ +
T Consensus 155 ~~------~t~lv~i~~~~n~tG~~~~~~---~i~~~~~~~~~~~ivD~a~~~~~~---~-~~~~~~------------~ 209 (398)
T TIGR03392 155 TP------RTRILALGQMSNVTGGCPDLA---RAITLAHQYGAVVVVDGAQGVVHG---P-PDVQAL------------D 209 (398)
T ss_pred cc------CceEEEEECccccccccCCHH---HHHHHHHHcCCEEEEEhhhhcCCC---C-CChhhc------------C
Confidence 65 789999999999999999854 588889999999999999973211 1 222211 3
Q ss_pred eEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-----------------------ccccCcHHHHHHHHHH---h
Q 043923 263 RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----------------------SFGLVSSQTQYLLSAL---L 316 (469)
Q Consensus 263 ~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----------------------~~~~~s~~~q~~~~~~---l 316 (469)
..+++.|++|.+|.+| +||++++++.+.. +.... ..++.+.+...++.++ +
T Consensus 210 ~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l 286 (398)
T TIGR03392 210 IDFYAFSGHKLYGPTG--IGVLYGKTELLEA-MPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWL 286 (398)
T ss_pred CCEEEEecccccCCCc--eEEEEEcHHHHhh-CCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHH
Confidence 4567788999988555 8999986554322 21110 0122333333333333 3
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 317 SDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
.+.. .++.+++..+.++++.+.|.++ |+++..+..+.++++.+++. +..++...| .++||.+++|.
T Consensus 287 ~~~g-----~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------~~~~l~~~L-~~~gI~v~~g~ 353 (398)
T TIGR03392 287 TDID-----IAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------HHSDLAALL-AESGIALRAGQ 353 (398)
T ss_pred HHhC-----HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------CHHHHHHHH-HhCCEEEecCc
Confidence 3322 2445566777778888888877 77766554556777776531 122455554 57799999998
Q ss_pred CCCC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 396 SCHC------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 396 ~f~~------~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+.. ..++++|+|++. .+++|+++++++|+++++..
T Consensus 354 ~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 354 HCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred cchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 6542 125799999976 49999999999999988754
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=240.00 Aligned_cols=340 Identities=13% Similarity=0.120 Sum_probs=232.8
Q ss_pred CCCeeeeeccc-ccc-ChHHHHHHHhcCCCccccccCCcccc-cccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 37 PTGIIQMGLAE-NQL-SFDLLESWLDRNPDAAGFKRDGQSIF-RELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 37 ~~~~i~L~~~~-n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
..++|||+.+. ..+ +++.+.+++.+.... . .....|....|..++++++++++.+.++ .++.
T Consensus 32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g-----~~~~ 96 (385)
T TIGR01825 32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQ----------YGVGAGAVRTIAGTLRLHEELEEKLAKFKK-----TEAA 96 (385)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHH----------cCCCCCccCcccCCcHHHHHHHHHHHHHhC-----CCcE
Confidence 45789999875 234 445555555543110 0 1123566778899999999999988765 2466
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++++|+ +++..++.+++++||.|+++.|+|..+...+... |++++.++ .+|++++++.+.+.. .++++
T Consensus 97 i~~~sG~-~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~-g~~~~~~~-------~~d~~~l~~~l~~~~--~~~~~ 165 (385)
T TIGR01825 97 LVFQSGF-NTNQGVLSALLRKGDIVLSDELNHASIIDGLRLT-KATKKIYK-------HADMDDLDRVLRENP--SYGKK 165 (385)
T ss_pred EEECcHH-HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhc-CCceEEeC-------CCCHHHHHHHHHhhc--cCCCe
Confidence 8888884 5666788888999999999999999887777766 88877654 257788888776421 23678
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|++++++||||.+.+ +++|.++|++||+++|+||+|+.+.++....... .... . ..+.++++.||||+
T Consensus 166 ~v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~-~------~~~~~i~~~s~sK~ 234 (385)
T TIGR01825 166 LIVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTV-HHFG-L------EDKVDIQVGTLSKA 234 (385)
T ss_pred EEEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccH-hhcC-C------CcCCcEEEEeccHH
Confidence 8888888999999988 4568999999999999999998654542211111 1111 0 24678999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhc-cc--c-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMS-SF--G-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~-~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
||++| ||++++++ +.+.+.... .+ . ..+++.+.++.++++... +. .+..+++.++++++.+.|++.|+
T Consensus 235 ~~~~g---G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~---~~-~~~~~~~~~~~~~l~~~L~~~g~ 306 (385)
T TIGR01825 235 IGVVG---GYAAGHKE-LIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQ---RS-PELMERLWDNTRFFKAGLGKLGY 306 (385)
T ss_pred hhcCC---CEEecCHH-HHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh---cC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 98776 99988544 444443322 12 2 234566666666664321 11 23455667788999999998898
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--CCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFAN-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--~~~~~iRi~~~~-~~~e~i~~~l~~L~~ 426 (469)
++..+.+. ++++.++.. .+..+++..++++ ||.+. +..|+. .+..++|++++. .+++++++++++|++
T Consensus 307 ~~~~~~~~-~~~~~~~~~------~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 377 (385)
T TIGR01825 307 DTGGSETP-ITPVVIGDE------KAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEK 377 (385)
T ss_pred CCCCCCCC-EEEEEECCH------HHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 88777664 454544321 1233577777766 99985 444432 234689998864 599999999999999
Q ss_pred HHHh
Q 043923 427 FVDS 430 (469)
Q Consensus 427 ~l~~ 430 (469)
++++
T Consensus 378 ~~~~ 381 (385)
T TIGR01825 378 VGKE 381 (385)
T ss_pred HHHH
Confidence 9865
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=239.48 Aligned_cols=347 Identities=13% Similarity=0.091 Sum_probs=231.0
Q ss_pred CeeeeeccccccChHHHHHHHhcCC-CccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNP-DAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
..|+|..++|.+++. +.+++.+.. ..... + ......|....+.+.+++.+++++.+.++ .+...|+++
T Consensus 20 ~~~~~~~~~~~~~~~-v~~a~~~~~~~~~~~---g---~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~v~~~ 88 (402)
T cd00378 20 ETLELIASENFTSPA-VMEAMGSDLTNKYAE---G---YPGKRYYGGCEYVDEIEDLAIERAKKLFG----AEYANVQPH 88 (402)
T ss_pred hCeeeeccCCcCCHH-HHHHhcccccccccC---C---CCCCcccCCchHHHHHHHHHHHHHHHHhC----CCceeeecC
Confidence 468998888887654 555554321 10000 0 01233466666778888877777766655 444556666
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH-----HhhhCCCEEEEeeccCC-CCcccCHHHHHHHHHHHHhcCCc
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD-----LKWRTGVEIVPIQCTSL-NGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~-----~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
+ +++|+..++.+++++||+|+++.|+|..+... +... |.++..++++.+ .++.+|++++++++.+. +
T Consensus 89 s-gt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~id~~~l~~~i~~~-----~ 161 (402)
T cd00378 89 S-GSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSAS-GKLFESVPYGVDPETGLIDYDALEKMALEF-----K 161 (402)
T ss_pred C-cHHHHHHHHHHhcCCCCEEEEecCccCcccccccccccccc-ceeEEEecCCcCcccCCcCHHHHHHHHHhC-----C
Confidence 5 57999999999999999999999999876443 4445 887777776543 26789999999988632 7
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc-cccccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY-SGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
++++++++|+||+ ..+ +++|+++|++||++||+|++| .++.+.+..... + . ...++++|+
T Consensus 162 ~~~v~~~~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~---~----------~-~~dv~~~s~ 222 (402)
T cd00378 162 PKLIVAGASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNP---L----------P-GADVVTTTT 222 (402)
T ss_pred CCEEEecCcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCc---c----------c-CCcEEEecc
Confidence 8889999998864 334 667999999999999999996 443333321111 1 1 123678999
Q ss_pred ccccCCCcceEEEEEecCHHHHHHHHHhcc-cc-cCcH-HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 271 SKDLGLPGFRVGAIYSNDDMVVAAATKMSS-FG-LVSS-QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 271 SK~~g~~GlRiG~li~~~~~~~~~~~~~~~-~~-~~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
||++ +|+|.||++++++.+.+.+.+... .. ..+. ....++..++.. ....+.++.++++.++++++.+.|.+.
T Consensus 223 sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~ 298 (402)
T cd00378 223 HKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKE--ALEPEFKAYAKQVVENAKALAEALKER 298 (402)
T ss_pred ccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9987 789999999977455555543322 21 1222 222222222221 111135667778899999999999999
Q ss_pred CCcee-cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC----CCCCCeEEEEeecC-----CHHHH
Q 043923 348 GISCL-KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH----CTEPGWFRVCFANM-----SEDTL 417 (469)
Q Consensus 348 g~~v~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~----~~~~~~iRi~~~~~-----~~e~i 417 (469)
|+++. .+.+++++|++++.... +. ..+.++++++||.+.++.... ...+.++|+++... +++++
T Consensus 299 g~~~~~~~~~~~~v~v~~~~~~~-----~~-~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di 372 (402)
T cd00378 299 GFKVVSGGTDNHLVLVDLRPKGI-----TG-KAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEM 372 (402)
T ss_pred CCeEeecCCCCeEEEEeCCccCC-----CH-HHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHH
Confidence 98876 45678999999974211 11 234456778899998643221 12356899998653 58999
Q ss_pred HHHHHHHHHHHHhhc
Q 043923 418 KLSMQRLKAFVDSIT 432 (469)
Q Consensus 418 ~~~l~~L~~~l~~~~ 432 (469)
+.+++.|++++++-+
T Consensus 373 ~~~~~~l~~~~~~~~ 387 (402)
T cd00378 373 EEIADFIARALKDAE 387 (402)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999887665
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=241.73 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=224.5
Q ss_pred Ceeeeecc-ccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 39 GIIQMGLA-ENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 39 ~~i~L~~~-~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
..++++.+ .++++ ++.+.+++.+..+...... -.....|+....+.+|++++|++++ .++.|++
T Consensus 47 ~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~-----~~s~~~~~~~~~~~~Le~~la~~~g---------~~~~i~~ 112 (410)
T PRK13392 47 RVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGA-----GGTRNISGTSHPHVLLERELADLHG---------KESALLF 112 (410)
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCC-----chhhhcccChHHHHHHHHHHHHHhC---------CCCEEEE
Confidence 46677764 66664 4666666654311100000 0011123333346889999999986 3567778
Q ss_pred eCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 117 TAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 117 t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+ +++..++..+. .+||.|+++.+.|..+...+... |+++..++.+ |.+.+++.++.. ..+++++
T Consensus 113 ~sG~-~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~-g~~~~~~~~~-------d~~~l~~~l~~~--~~~~t~~ 181 (410)
T PRK13392 113 TSGY-VSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRS-GAEKQVFRHN-------DLADLEEQLASV--DPDRPKL 181 (410)
T ss_pred CcHH-HHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHc-CCeEEEEeCC-------CHHHHHHHHHhc--cCCCCEE
Confidence 7775 56666666664 38898888777777777777666 8888776532 455666666532 1237889
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.+++ +++|.++|++||+++|+||+|+...++... ........ . .....++++|+||+|
T Consensus 182 v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g-~g~~~~~~-~------~~~~div~~tlsK~~ 250 (410)
T PRK13392 182 IAFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARG-GGIAERDG-L------MDRIDMIQGTLAKAF 250 (410)
T ss_pred EEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCC-Cchhhhcc-C------CCCCcEEEEEChHhh
Confidence 999999999999998 555888888999999999999844343221 22221111 0 112347889999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc---c-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF---G-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS 350 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~---~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~ 350 (469)
|++| ||+++++ .+.+.+++.... . ..+++.+.++.++|+.... ....+++++++++++.+.|++.|++
T Consensus 251 g~~G---G~~~~~~-~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~ 322 (410)
T PRK13392 251 GCLG---GYIAASA-DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKT----SQTERDAHQDRVAALKAKLNANGIP 322 (410)
T ss_pred hccc---chhhcCH-HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9888 9998854 454544444322 1 2344667777777754322 2345577888889999999999998
Q ss_pred eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 351 CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
+.++.+++ +.+.++.. ....+++++|++++||.+.++..... .+..++|+++.. .+++++++++++|++++
T Consensus 323 ~~~~~~~~-~~i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~ 395 (410)
T PRK13392 323 VMPSPSHI-VPVMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIW 395 (410)
T ss_pred CCCCCCCE-EEEEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 87777654 43444321 12345777777778999998754332 234689999965 49999999999999997
Q ss_pred Hhh
Q 043923 429 DSI 431 (469)
Q Consensus 429 ~~~ 431 (469)
++.
T Consensus 396 ~~~ 398 (410)
T PRK13392 396 DRL 398 (410)
T ss_pred HHc
Confidence 654
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-27 Score=234.95 Aligned_cols=336 Identities=14% Similarity=0.130 Sum_probs=220.0
Q ss_pred CCCCeeeeeccccc-c-ChHHHHHHHhcCCCccccccCCccccc-ccccCCCCCC----cHHHHHHHHHHHHhHcCCCCC
Q 043923 36 NPTGIIQMGLAENQ-L-SFDLLESWLDRNPDAAGFKRDGQSIFR-ELALFQDYHG----LPAFKKALVEFMSEIRGNKVT 108 (469)
Q Consensus 36 ~~~~~i~L~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g----~~~Lr~aia~~l~~~~~~~~~ 108 (469)
....+|||+.+++. + +++.+.+++.+.... +. ....|....| ..+++++++++++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------- 98 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARR----------YGAGSGGSRLVTGNSPAHEALEEELAEWFG-------- 98 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHh----------cCCCCCCcCcccCCcHHHHHHHHHHHHHhC--------
Confidence 45678999999763 2 446666666553110 00 0111222223 3455555555553
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR 188 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 188 (469)
.++.|++++ +++++..++..++++||.|+++.|+|+.+...+... |++++.++. .|++.+++.+++.
T Consensus 99 -~~~~i~~~~-g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~i~~~--- 165 (385)
T PRK05958 99 -AERALLFSS-GYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLS-RARVRRYPH-------NDVDALEALLAKW--- 165 (385)
T ss_pred -CCcEEEECc-HHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhc-CCceEEeCC-------CCHHHHHHHHHhc---
Confidence 245555555 556666677888999999999999999998887776 999888874 2778888888641
Q ss_pred CCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEc
Q 043923 189 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY 268 (469)
Q Consensus 189 ~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~ 268 (469)
.+++.++++.+++||||...+ +++|.++|++||+++|+||+|+...++... ........ + +..++++++.
T Consensus 166 ~~~~~lvi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g-~~~~~~~~-~-----~~~~~~i~~~ 235 (385)
T PRK05958 166 RAGRALIVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQG-RGLAAEAG-L-----AGEPDVILVG 235 (385)
T ss_pred cCCCeEEEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCC-CchHHhhC-C-----CCCCceEEEE
Confidence 113556666677999998877 566888999999999999999754443221 11111100 0 1336789999
Q ss_pred cCccccCCCcceEEEEEecCHHHHHHHHHh-ccc--c-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043923 269 SLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSF--G-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGL 344 (469)
Q Consensus 269 S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 344 (469)
|+||+||.+| ||+++++. +.+.+... ..+ . ..++....++.++++.... . ...++++.++++++.+.|
T Consensus 236 s~sK~~~~~G---g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~---~-~~~~~~~~~~~~~l~~~L 307 (385)
T PRK05958 236 TLGKALGSSG---AAVLGSET-LIDYLINRARPFIFTTALPPAQAAAARAALRILRR---E-PERRERLAALIARLRAGL 307 (385)
T ss_pred echhhcccCC---cEEEcCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc---C-HHHHHHHHHHHHHHHHHH
Confidence 9999999777 99988544 44433322 122 1 1334444445555543221 1 455678888889999999
Q ss_pred HhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHH
Q 043923 345 EKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQ 422 (469)
Q Consensus 345 ~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~~~~~iRi~~~~-~~~e~i~~~l~ 422 (469)
++.++++.++.+ .|+|+.++.. .+..+++..+. ++||.+.++..+.. .+++++||+++. .++++++++++
T Consensus 308 ~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~ 379 (385)
T PRK05958 308 RALGFQLMDSQS-AIQPLIVGDN------ERALALAAALQ-EQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLE 379 (385)
T ss_pred HHcCCCcCCCCC-CEEEEEeCCH------HHHHHHHHHHH-HCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHH
Confidence 988888776655 5777887631 22345777765 56999998654432 235689999975 49999999999
Q ss_pred HHHHHH
Q 043923 423 RLKAFV 428 (469)
Q Consensus 423 ~L~~~l 428 (469)
+|++++
T Consensus 380 ~l~~~~ 385 (385)
T PRK05958 380 ALAEAL 385 (385)
T ss_pred HHHhcC
Confidence 998753
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=233.73 Aligned_cols=300 Identities=15% Similarity=0.169 Sum_probs=205.2
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
-+.++++++|++++ + +++++++|+++++..++.+++++||.|+++.++|......+... |++++.++.+
T Consensus 45 ~~~~l~~~la~~~g--------~--~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~ 113 (361)
T cd06452 45 PIKDFHHDLAEFLG--------M--DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERA-GLNVREVPNT 113 (361)
T ss_pred hHHHHHHHHHHHcC--------C--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhc-CCEEEEEecC
Confidence 46899999999986 3 78999999999999999999999999999999887776667766 9999999988
Q ss_pred CCCCcccCHHHHHHHHHHHHhc-CCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 167 SLNGFQITETAIEEAYQLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 167 ~~~~~~~d~~~l~~~i~~~~~~-~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
.+++|.+|++.+++++++..+. ++++++|++++|+||||...+ +++|+++|+++|+++|+|++|+ ++..+ .+
T Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~---~g~~~-~~ 186 (361)
T cd06452 114 GHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYT---VGRMP-VS 186 (361)
T ss_pred CCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCcc---cCCcC-CC
Confidence 6556789999999998753211 236899999999999998866 5668888999999999999997 32211 12
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCc----------HHHHHHHHHH
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVS----------SQTQYLLSAL 315 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s----------~~~q~~~~~~ 315 (469)
... .+..++++|+||+++ ++.|+||++++++.+ +.+.+...++.++ .....++.+.
T Consensus 187 ~~~------------~~~d~~~~s~~K~l~-~~~~~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 252 (361)
T cd06452 187 GKE------------LGADFIVGSGHKSMA-ASAPIGVLATTEEWA-DIVFRTSQMFKIKEVELLGCTLRGAPLVTLMAS 252 (361)
T ss_pred HHH------------cCCCEEEecCCcccc-CCCCeEEEEECHHHH-HHHhccccccccceeeeeccccCchHHHHHHHH
Confidence 222 245688999999998 666999999965544 4443332221111 1112222222
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec--CCceEEEEEecccccccC--ChhHHHHHHHHHHHhCCeE
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK--SNAGLFCWVDMRHLLRSN--TFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~--~~~g~~~~v~~~~~~~~~--~~~~~~~l~~~ll~~~GI~ 390 (469)
+. +..++++...+. .++.+++.+.|+++ |+++.. +...+|+.++.+...... ......++.+.|+ ++||.
T Consensus 253 l~---~~~~~~~~~~~~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~ 327 (361)
T cd06452 253 FP---HVKERVKRWDEE-VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELK-KRGIH 327 (361)
T ss_pred HH---HHHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHH-HcCce
Confidence 21 112233333333 23447888999998 888762 223456767765211000 0011124666665 56998
Q ss_pred EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 391 ISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
+.. .....++|++....++++++.++++|+++.
T Consensus 328 ~~~-----~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 328 GIK-----PGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EEc-----CCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 531 123458999994458999999999998765
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=231.69 Aligned_cols=295 Identities=17% Similarity=0.193 Sum_probs=206.4
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (469)
.+++++.++++++ +++ +.+++++|+++++..++.+++.+||.|+++.++|.. +...++.. |++++.+|
T Consensus 34 ~~~~~~~la~~~g--------~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 104 (356)
T cd06451 34 MDEILEGLRYVFQ--------TENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERY-GADVDVVE 104 (356)
T ss_pred HHHHHHHHHHHhc--------CCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHh-CCCeEEee
Confidence 4566677777765 434 457889999999999999999999999999987765 34556666 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+. ++.+|++++++.+++ .++++|++++|+||||.+++.++ |.++|+++|+++|+|++|+ ++... .
T Consensus 105 ~~~--~~~~~~~~l~~~i~~-----~~~~~v~i~~~~~~~G~~~~~~~---i~~~a~~~~~~li~D~~~~---~g~~~-~ 170 (356)
T cd06451 105 KPW--GEAVSPEEIAEALEQ-----HDIKAVTLTHNETSTGVLNPLEG---IGALAKKHDALLIVDAVSS---LGGEP-F 170 (356)
T ss_pred cCC--CCCCCHHHHHHHHhc-----cCCCEEEEeccCCCcccccCHHH---HHHHHHhcCCEEEEeeehh---ccCcc-c
Confidence 874 457899999998864 27889999999999999998555 7888889999999999986 43321 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH----hc----------------cc-cc
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK----MS----------------SF-GL 303 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~----~~----------------~~-~~ 303 (469)
++.. .+..+++.|++|+++. +.++||++.+++.+.. +.. .. .. ++
T Consensus 171 ~~~~------------~~~d~~~~s~~K~l~~-p~g~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 236 (356)
T cd06451 171 RMDE------------WGVDVAYTGSQKALGA-PPGLGPIAFSERALER-IKKKTKPKGFYFDLLLLLKYWGEGYSYPHT 236 (356)
T ss_pred cccc------------cCccEEEecCchhccC-CCCcceeEECHHHHHH-HHhcCCCCceeecHHHHHhhhcccCCCCCC
Confidence 2111 1334567789999984 4479999996654433 321 00 01 11
Q ss_pred CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecccccccCChhHHHHHH
Q 043923 304 VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
.+...+.++.+++.... ...++...++..++.+++.+.|++.|+++..+. ++.++|+.++... +..+++
T Consensus 237 ~~~~~~~a~~aal~~l~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 308 (356)
T cd06451 237 PPVNLLYALREALDLIL--EEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGV------DGDEVV 308 (356)
T ss_pred ChHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCC------CHHHHH
Confidence 23333444444443211 223456677778888999999998888776432 3455677766422 123566
Q ss_pred HHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHHHHHHH
Q 043923 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~ 429 (469)
+.|.+++||.+.+|..+. .++++|++++.. +++++++++++|+++++
T Consensus 309 ~~L~~~~gI~~~~g~~~~--~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 309 RRLMKRYNIEIAGGLGPT--AGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred HHHHHhCCEEEecccccc--cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 666654599999987432 356999999763 89999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=237.27 Aligned_cols=296 Identities=16% Similarity=0.187 Sum_probs=212.2
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEEccCCCcChHH---HHhhhCCCEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----EPGEAFLLPTPYYPGFDR---DLKWRTGVEI 160 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~---~~~~~~g~~~ 160 (469)
+.++|+.+|++++ .++++|++++|+++++..++.++. ++||.|++..+.|+.+.. .++.. |+++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~-g~~v 115 (381)
T PRK02948 45 LQVCRKTFAEMIG--------GEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQ-GYTV 115 (381)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhC-CCEE
Confidence 4677788888875 578999999999999999888875 578999998866665543 45555 9999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
..++++. ++.+|++++++++++ ++++|++++|+||||.+++.+ +|.++|+++|+++|+|+++. ++.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~~~---~I~~l~~~~~~~vivD~~~~---~g~ 181 (381)
T PRK02948 116 TEIPVDK--SGLIRLVDLERAITP------DTVLASIQHANSEIGTIQPIA---EIGALLKKYNVLFHSDCVQT---FGK 181 (381)
T ss_pred EEEeeCC--CCCCCHHHHHHhcCC------CCEEEEEECCcCCcEeehhHH---HHHHHHHHcCCEEEEEChhh---ccc
Confidence 9999873 456899999988764 788999999999999999855 58888889999999998765 443
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-HHHHHH-----HhcccccCcHHHHHHHHH
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-VVAAAT-----KMSSFGLVSSQTQYLLSA 314 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-~~~~~~-----~~~~~~~~s~~~q~~~~~ 314 (469)
.+ ..+. ..+..+++.|++|.+|.+| +|++++++.. +..... ....+++++.+++.++.+
T Consensus 182 ~~-~~~~------------~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~ 246 (381)
T PRK02948 182 LP-IDVF------------EMGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLT 246 (381)
T ss_pred cc-cCcc------------cCCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHH
Confidence 22 1211 2356778899999999888 7888875542 111100 001245577888888888
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE-----EEEecccccccCChhHHHHHHHHHHHhCCe
Q 043923 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-----CWVDMRHLLRSNTFEAEMELWKKIVYDVKL 389 (469)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~-----~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI 389 (469)
++... .+++++.++++++.++++.+.|+++|+++.+.....+ +.+.++. . +..++...+ .++||
T Consensus 247 al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~~l-~~~gI 315 (381)
T PRK02948 247 AAENI---LKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG-I------EGQYTMLEC-NRRGI 315 (381)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCC-C------CHHHHHHhc-ccCCE
Confidence 77642 3457778889999999999999998877654321122 2222221 0 112344444 57799
Q ss_pred EEeCCCCCCC-----------------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 390 NISPGSSCHC-----------------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 390 ~v~pg~~f~~-----------------~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+++|..+.. ...+++|+|++. .+++|++++++.|+++++...
T Consensus 316 ~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 316 AISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred EEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998875321 114689999986 499999999999999876543
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=236.20 Aligned_cols=337 Identities=17% Similarity=0.144 Sum_probs=218.4
Q ss_pred CCCCeeeeecc--ccccCh--HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLSF--DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ .+.+.+ +.+.+++.+.... .. +....+..++++++++++.+.. ..
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~-------------~~-~~~~~~~~~~~~~la~~l~~~~------~~ 96 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAK-------------LI-HTSNLYYIEPQEELAEKLVELS------GM 96 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhh-------------cc-ccccccCCHHHHHHHHHHHhhc------CC
Confidence 34568999876 444443 5666666653111 10 1111123577888888887653 35
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCC-------CEEEEccCCCcChHHHHhhhCCCEEEE---eeccCCCCc----ccCHHH
Q 043923 112 SKIVLTAGATSANETLMFCLAEPG-------EAFLLPTPYYPGFDRDLKWRTGVEIVP---IQCTSLNGF----QITETA 177 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~g-------d~Vl~~~P~y~~~~~~~~~~~g~~~~~---v~~~~~~~~----~~d~~~ 177 (469)
+++++++|+++|+..+++.+...+ ++|++..+.|.++........+..... .++. .++ ..|+++
T Consensus 97 ~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~ 174 (396)
T PRK02627 97 DKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEA 174 (396)
T ss_pred CEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHH
Confidence 899999999999999999765333 679999999987765544331322211 1111 121 127888
Q ss_pred HHHHHHHHHhcCCceeEEEEecCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccc
Q 043923 178 IEEAYQLAQKRHLKVKGVLVTNPSNPLG-TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 256 (469)
Q Consensus 178 l~~~i~~~~~~~~~~~~vvl~~P~NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~ 256 (469)
+++++.+ ++++|++++++||+| .+++.+.+++|.++|++||+++|+||+|.++.+.+.. .+. ....
T Consensus 175 l~~~i~~------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~-~~~-~~~~----- 241 (396)
T PRK02627 175 LKAAITD------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL-FAY-QHYG----- 241 (396)
T ss_pred HHHhcCC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce-eee-hhcC-----
Confidence 8888743 789999988899999 6889999999999999999999999999986444321 121 1111
Q ss_pred cCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Q 043923 257 NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLK 334 (469)
Q Consensus 257 ~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~ 334 (469)
..+++ .||||+++ +|+|+||++++++ +.+.+.. ....+..+++.|.++.++|+.... .++.+..++...
T Consensus 242 ---~~pdi---~t~sK~~~-~G~rig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~ 312 (396)
T PRK02627 242 ---IEPDI---MTLAKGLG-GGVPIGAVLAKEK-VADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGE 312 (396)
T ss_pred ---CCCCE---EEEcchhh-CCcccEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 11232 37999999 9999999999654 4444432 222334788899988888864322 222333333333
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CC
Q 043923 335 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 413 (469)
Q Consensus 335 ~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~ 413 (469)
..++.+.+.+.+++........|+++|++++. +..+++..++++ ||.+.|+. .+++|++++. .+
T Consensus 313 ~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~------~~~lRi~~~~~~~ 377 (396)
T PRK02627 313 YLRAKLRELLEKYPGIKEVRGLGLMIGIELDR--------PAAEIVKKALEK-GLLINVTG------DNVLRLLPPLIIS 377 (396)
T ss_pred HHHHHHHHHHHhCCCeeeeccCcEEEEEEecC--------cHHHHHHHHHHC-CeEEeecC------CCEEEEECCcccC
Confidence 33333444433332211222346899998831 134677777755 99999863 3679998863 59
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 043923 414 EDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 414 ~e~i~~~l~~L~~~l~~~ 431 (469)
++++++++++|++++++.
T Consensus 378 ~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 378 KEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998653
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=229.64 Aligned_cols=340 Identities=14% Similarity=0.153 Sum_probs=225.3
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCC--CCCCcHHHHHHHHHHHHhHcCCCCCCC-CCcE
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQ--DYHGLPAFKKALVEFMSEIRGNKVTFD-TSKI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~Lr~aia~~l~~~~~~~~~~~-~~~i 114 (469)
.+++-|+.+....++..+.+++.+........+. .....+. .....+++|+++|++++ .+ +++|
T Consensus 17 ~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~r~~ia~~~~--------~~~~~~v 83 (403)
T TIGR01979 17 KPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVH-----RGIHTLSVRATEAYEAVREKVAKFIN--------AASDEEI 83 (403)
T ss_pred CceEEEeCccccCCCHHHHHHHHHHHHhCCCCCC-----CCccHHHHHHHHHHHHHHHHHHHHhC--------cCCCCeE
Confidence 3578888887766665566666543110000000 0000000 01245688999999986 44 6799
Q ss_pred EEeCChHHHHHHHHHHh----cCCCCEEEEccCCCcChH----HHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCL----AEPGEAFLLPTPYYPGFD----RDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
++|+|+++++..++.++ .++||.|+++++.|+... ..+... |++++.++.+. ++.+|++++++++++
T Consensus 84 ~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~i~~-- 158 (403)
T TIGR01979 84 VFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERT-GATLKFIPLDD--DGTLDLDDLEKLLTE-- 158 (403)
T ss_pred EEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhc-CcEEEEEecCC--CCCCCHHHHHHHhcc--
Confidence 99999999999998875 578999999999877643 334445 99999999873 456889999998865
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++++|++++|+||||.+++. ++|.++|+++|+++|+|++|+. ...+ ..+. ..+.+++
T Consensus 159 ----~~~lv~~~~~~~~tG~~~~~---~~i~~~~~~~~~~~ivD~a~~~---g~~~-~~~~------------~~~~d~~ 215 (403)
T TIGR01979 159 ----KTKLVAITHVSNVLGTVNPV---EEIAKLAHQVGAKVLVDGAQAV---PHMP-VDVQ------------ALDCDFY 215 (403)
T ss_pred ----CCeEEEEEcccccccccCCH---HHHHHHHHHcCCEEEEEchhhc---Cccc-cCcc------------ccCCCEE
Confidence 88999999999999999995 4588888999999999999973 2111 1221 1245688
Q ss_pred EccCccccCCCcceEEEEEecCHHHHHHHHHhc-----------------------ccccCcHHHHHHHHHHhcCchhhH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----------------------SFGLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----------------------~~~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
+.|++|.+|.+| +|++++++..+ +.+.... ..++.+.....++..+++... .
T Consensus 216 ~~s~~K~~gp~G--~g~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~--~ 290 (403)
T TIGR01979 216 VFSGHKMYGPTG--IGVLYGKEELL-EQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLE--A 290 (403)
T ss_pred EEecccccCCCC--ceEEEEchHHH-hcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHH--H
Confidence 899999988666 89998865433 2221100 011233344444444442211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC----ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKA-GISCLKSN----AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~----~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
...+..+++..+.++.+.+.|+++ ++++..+. .+.++.+.++.. +..++. ..|+++||.+++|..+.
T Consensus 291 ~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~-~~L~~~gI~v~~g~~~~ 362 (403)
T TIGR01979 291 IGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV-------HPHDVG-TILDEEGIAVRSGHHCA 362 (403)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCc-------CHHHHH-HHHhhCCEEEcchhhhh
Confidence 113555677777888888888877 78877553 134555666531 112343 45668899999876432
Q ss_pred C------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 399 C------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 399 ~------~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
. ..++++|||++. .+++|+++++++|+++++.+
T Consensus 363 ~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 363 QPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 1 125789999986 38999999999999887653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=230.07 Aligned_cols=341 Identities=14% Similarity=0.131 Sum_probs=226.4
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCC---CCCcHHHHHHHHHHHHhHcCCCCCC-CCCc
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD---YHGLPAFKKALVEFMSEIRGNKVTF-DTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~Lr~aia~~l~~~~~~~~~~-~~~~ 113 (469)
.++|-|+.+....++..+.+++.+........ ......|.. ...+.++|+++|++++ . ++++
T Consensus 31 ~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~r~~la~~~~--------~~~~~~ 96 (424)
T PLN02855 31 SKLVYLDNAATSQKPAAVLDALQDYYEEYNSN------VHRGIHALSAKATDAYELARKKVAAFIN--------ASTSRE 96 (424)
T ss_pred CCeEEeeCccccCCCHHHHHHHHHHHHhcCCC------CCCccchHHHHHHHHHHHHHHHHHHHcC--------CCCCCE
Confidence 35788888766666666666665531100000 000001110 1235688999999986 3 3579
Q ss_pred EEEeCChHHHHHHHHHHh----cCCCCEEEEccCCCcCh----HHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHH
Q 043923 114 IVLTAGATSANETLMFCL----AEPGEAFLLPTPYYPGF----DRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLA 185 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 185 (469)
|++|+|+++++..++.++ +++||.|+++.+.|+.. ...++.. |++++.++++.++ .+|++++++++++
T Consensus 97 v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~-g~~v~~v~~~~~~--~~~~~~l~~~i~~- 172 (424)
T PLN02855 97 IVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKT-GAVLKFVGLTPDE--VLDVEQLKELLSE- 172 (424)
T ss_pred EEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHc-CCEEEEEecCCCC--CcCHHHHHHHhcc-
Confidence 999999999999998763 58899999999988753 3334455 9999999986433 4789999998865
Q ss_pred HhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEE
Q 043923 186 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i 265 (469)
++++|++++|+||||.+++.+ +|+++|+++|+++|+|++|+ .+..+ ..+. ..+..+
T Consensus 173 -----~t~lv~i~~~~n~tG~~~~~~---~I~~l~~~~g~~vivD~a~~---~g~~~-~~~~------------~~~~d~ 228 (424)
T PLN02855 173 -----KTKLVATHHVSNVLGSILPVE---DIVHWAHAVGAKVLVDACQS---VPHMP-VDVQ------------TLGADF 228 (424)
T ss_pred -----CceEEEEeCccccccccCCHH---HHHHHHHHcCCEEEEEhhhh---cCCcC-CCch------------hcCCCE
Confidence 889999999999999999965 57888999999999999996 32221 2221 124457
Q ss_pred EEccCccccCCCcceEEEEEecCHHHHHHHHHhc-----------------------ccccCcHHHHHHHHHHhcCchhh
Q 043923 266 IVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----------------------SFGLVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 266 ~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----------------------~~~~~s~~~q~~~~~~l~~~~~~ 322 (469)
++.|++|.+|.+| +||+++++..+.. +.... ..++.+.....++.+++....
T Consensus 229 ~~~s~~K~~gp~G--~G~l~~~~~~~~~-~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~-- 303 (424)
T PLN02855 229 LVASSHKMCGPTG--IGFLWGKSDLLES-MPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS-- 303 (424)
T ss_pred EEeecccccCCCc--cEEEEEchhhhhc-CCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH--
Confidence 7899999877455 8999986554322 21110 012233333344444443111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC------ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN------AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~------~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
+..+++.+++..+.++++.+.|+++ |+++..+. .+.++.+.+++. ...++...|.+++||.++.|.
T Consensus 304 ~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-------~~~~v~~~L~~~~gI~v~~g~ 376 (424)
T PLN02855 304 EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-------HPTDLSTFLDQQHGVAIRSGH 376 (424)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-------CHHHHHHHhcccCCEEEechh
Confidence 1134566777777888888888877 77776432 234666776631 122455555545599999887
Q ss_pred CCCC------CCCCeEEEEeecC-CHHHHHHHHHHHHHHHHhhc
Q 043923 396 SCHC------TEPGWFRVCFANM-SEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 396 ~f~~------~~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+.. .-++++|+|++.. +++|++++++.|+++++..+
T Consensus 377 ~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 377 HCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred hhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 5432 1246899999764 89999999999999987643
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=228.07 Aligned_cols=329 Identities=16% Similarity=0.110 Sum_probs=211.2
Q ss_pred CCCeeeeecc--ccccCh--HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLSF--DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
....|||..+ .|++++ +.+.+++.+..... ......|+. ....+|.+.++++++ .+
T Consensus 26 g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~---------~~~~~~~~~-~~~~~l~~~la~~~g----------~~ 85 (379)
T TIGR00707 26 GKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKL---------VHVSNLYYT-EPQEELAEKLVEHSG----------AD 85 (379)
T ss_pred CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhc---------cccccccCC-HHHHHHHHHHHhhCC----------CC
Confidence 3468999886 555543 55665555431110 001123432 234555666665543 35
Q ss_pred cEEEeCChHHHHHHHHHHhc---C----CCCEEEEccCCCcChHHHHhhhCCCEEE----EeeccCCCCccc--CHHHHH
Q 043923 113 KIVLTAGATSANETLMFCLA---E----PGEAFLLPTPYYPGFDRDLKWRTGVEIV----PIQCTSLNGFQI--TETAIE 179 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~---~----~gd~Vl~~~P~y~~~~~~~~~~~g~~~~----~v~~~~~~~~~~--d~~~l~ 179 (469)
++++++|+++++..++.++. . +||+|++++|+|+.+...+... +.... ..++..+..+.. |++.++
T Consensus 86 ~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 164 (379)
T TIGR00707 86 RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSA-TGQPKYQKGFEPLVPGFSYAPYNDIESLK 164 (379)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHh-cCChhhhccCCCCCCCceeeCCCCHHHHH
Confidence 99999999999999988652 2 3799999999998877665544 33221 122221111111 788998
Q ss_pred HHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccC
Q 043923 180 EAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 258 (469)
Q Consensus 180 ~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~ 258 (469)
+.+++ ++++|+++.++||+|.. ++.+++++|.++|++|++++|+||+|.++.+.+.. .+. ....
T Consensus 165 ~~~~~------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~-~~~~------- 229 (379)
T TIGR00707 165 KAIDD------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FAY-EHYG------- 229 (379)
T ss_pred HHhhh------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hhH-HhcC-------
Confidence 88865 78888886556677764 79999999999999999999999999875443321 111 1111
Q ss_pred CcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH
Q 043923 259 QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQR 336 (469)
Q Consensus 259 ~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~ 336 (469)
..++++ ||||+++ +|+|+||+++++ .+.+.+... ...+..+++.|.++.++|+.... ....+.++++
T Consensus 230 -~~~d~~---t~sK~~~-~G~riG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~-----~~~~~~~~~~ 298 (379)
T TIGR00707 230 -IEPDII---TLAKGLG-GGVPIGATLAKE-EVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEK-----ERLLENVKEK 298 (379)
T ss_pred -CCCCEE---EEccccc-CCcccEEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----hhHHHHHHHH
Confidence 123333 7899999 999999999964 454544432 12234678888888877753211 1234455556
Q ss_pred HHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-
Q 043923 337 HRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 411 (469)
Q Consensus 337 ~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~- 411 (469)
++.+.+.|++. ++... +..|+|+|+.++.. ..++.+.| .++||.+.|+. .+++|++++.
T Consensus 299 ~~~~~~~l~~~~~~~~~~~~-~~~g~~~~~~~~~~--------~~~~~~~l-~~~Gv~v~~~~------~~~lRi~~~~~ 362 (379)
T TIGR00707 299 GDYFKERLEELGKNYPNKEV-RGKGLMLGIELEAP--------CKDIVKKA-LEKGLLVNCAG------PKVLRFLPPLI 362 (379)
T ss_pred HHHHHHHHHHHHhhCCCCcc-ccCceEEEEEecCc--------HHHHHHHH-HHCCcEEeeCC------CCEEEEECCCc
Confidence 66666666554 32212 23568899987631 23455554 56799999853 4689999865
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043923 412 MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 412 ~~~e~i~~~l~~L~~~l 428 (469)
.+++++++++++|++++
T Consensus 363 ~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 363 ITKEEIDEAVSALEEAI 379 (379)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 59999999999998763
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=220.43 Aligned_cols=297 Identities=15% Similarity=0.155 Sum_probs=202.7
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
...++++.++++++ . ++ .++++++++++..++.+++++||.|+++.|+|..+...+... |++++.++.
T Consensus 47 ~~~~l~~~la~~~~--------~-~~-~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~- 114 (349)
T cd06454 47 LHEELEEELAEFHG--------K-EA-ALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLS-GAKKRIFKH- 114 (349)
T ss_pred HHHHHHHHHHHHhC--------C-CC-EEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHc-CCceEEecC-
Confidence 34667777777664 2 23 455556677888888888899999999999999988777776 999988762
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 167 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
+|++.+++.+++.. ...+++++++++|+||||...+ +++|+++|+++|+++|+|++|+...+.... ..+
T Consensus 115 ------~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~-~~~ 183 (349)
T cd06454 115 ------NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHG-RGV 183 (349)
T ss_pred ------CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCC-CCh
Confidence 36788888886532 1235788888999999999877 556888999999999999999743232111 111
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc---ccCcHHHHHHHHHHhcCchhhH
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
... .. +..+.+++++|+||.+|.+| ||+++++..+.........+ +..+...+.++.+.++...
T Consensus 184 ~~~-~~------~~~~~~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--- 250 (349)
T cd06454 184 EEF-GG------LTDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQ--- 250 (349)
T ss_pred hhh-cc------ccccCcEEEeechhhhcccC---CEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHh---
Confidence 111 10 13367899999999998655 99988554433322222222 2345555556555554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-CCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEP 402 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~~~ 402 (469)
+ .+..++++.++++.+.+.|.++|+++.++.++++.++.++.. .+..++.+.|+++ ||.+.++..... ...
T Consensus 251 ~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~ 322 (349)
T cd06454 251 G-GPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDP------AKAVAFSDALLER-GIYVQAIRYPTVPRGT 322 (349)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCCh------HHHHHHHHHHHhC-CceEEEecCCccCCCC
Confidence 1 355678888899999999998888877665656555544321 2234667777655 999998643211 224
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 403 GWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 403 ~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
+++|++++. .+++++++++++|+++
T Consensus 323 ~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 323 ARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 789999986 4999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=225.75 Aligned_cols=227 Identities=20% Similarity=0.295 Sum_probs=172.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~ 154 (469)
..+|+.+ ....|++.||++.+ .+++++++|+++|+..++.+++++||.|+++.|+|+.+...+ ..
T Consensus 77 y~R~~~P-t~~~Le~~lA~leg----------~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~ 145 (427)
T PRK07049 77 YSRFNHP-NSEIVEDRLAVYEG----------AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN 145 (427)
T ss_pred ccCCCCc-CHHHHHHHHHHHhC----------CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh
Confidence 4567765 45899999999985 456888899999999999999999999999999999997654 34
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh---cCeEEEEec
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE---KNIHLISDE 231 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~---~~~~iI~De 231 (469)
. |++++.++.. .|++++++++.+... .+++++|++++|+||||.+++.+++.+|++.|+. +++++|+||
T Consensus 146 ~-Gi~~v~~~~~------~d~~~l~~~l~~~~~-~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDe 217 (427)
T PRK07049 146 F-GVGAVGFADG------LSEAAIGAAAEAAAA-KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDN 217 (427)
T ss_pred c-CcEEEEEeCC------CCHHHHHHHHHhhcc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEEC
Confidence 4 9988777621 366778877754211 1378999999999999999999999999988654 689999999
Q ss_pred cccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhccc--ccCcHHH
Q 043923 232 IYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQT 308 (469)
Q Consensus 232 ay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~ 308 (469)
+|....+.. + + ..+..++++|+||.+| ++|+|+||+++++. +.+.+...... ..++++.
T Consensus 218 ty~~~~~~~----p---l----------~~g~divv~S~SK~~gG~~glr~G~vv~~~~-l~~~l~~~~~~~g~~ls~~~ 279 (427)
T PRK07049 218 TLLGPVFQK----P---L----------EHGADLSVYSLTKYVGGHSDLVAGAVLGRKA-LIRQVRALRSAIGTQLDPHS 279 (427)
T ss_pred CccccccCC----c---c----------ccCCCEEEEcCceeecCCCCcEEEEEECCHH-HHHHHHHHHHhcCCCCCHHH
Confidence 987542211 1 1 1145688899999998 69999999998544 54544444333 2377888
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 043923 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GI 349 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~ 349 (469)
++++.+.++. +..+.++..++++.+.+.|+++ ++
T Consensus 280 a~l~~r~L~t-------l~~R~~~~~~~a~~la~~L~~~p~V 314 (427)
T PRK07049 280 CWMLGRSLET-------LVLRMERANRNARAVAEFLRDHPKV 314 (427)
T ss_pred HHHHHcCCCh-------HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888777753 3444556688889999999987 44
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=222.11 Aligned_cols=295 Identities=16% Similarity=0.191 Sum_probs=205.4
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCC--cEEEeCChHHHHHHHHHHhcCCCCEEEEccCC-CcC-hHHHHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTS--KIVLTAGATSANETLMFCLAEPGEAFLLPTPY-YPG-FDRDLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~-y~~-~~~~~~~~~g~~~~~v 163 (469)
..++|+.++++++ ++++ .|++++|+++++..++.+++.+||++++..+. |+. +...+... |.+++.+
T Consensus 33 ~~~~~~~la~~~~--------~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~-g~~~~~i 103 (355)
T TIGR03301 33 TDQVRDRLLALAG--------GDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYL-GIPHTDL 103 (355)
T ss_pred HHHHHHHHHHHhc--------CCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHc-CCceEEE
Confidence 5677888888776 3443 67889999999999999998888887766555 443 34455666 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+.+. ++.+|++++++++++ .++++.+++++++||||...+ +++|+++|++|++++|+|++++ ++..+
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s---~g~~~- 170 (355)
T TIGR03301 104 NFSE--YEPPDLNRIEEALAA----DPDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSS---FGAIP- 170 (355)
T ss_pred ecCC--CCCCCHHHHHHHHHh----CCCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEeccc---cCCcc-
Confidence 8763 456899999998864 235678888999999999988 5568889999999999998776 44322
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEecCHHHHHHHHHh-------------------ccccc
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKM-------------------SSFGL 303 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~~~~~~~~~~~~~-------------------~~~~~ 303 (469)
.++. ..+..++++|++|++ |.+| +||++++++.+.. +... ...++
T Consensus 171 ~~~~------------~~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t 235 (355)
T TIGR03301 171 IDIE------------ELDVDALIASANKCLEGVPG--FGFVIARRDLLEA-SAGNARSLYLDLYDQWAYMEKTGKWRFT 235 (355)
T ss_pred cchh------------hcCccEEEecCCcccccCCc--eeEEEECHHHHHH-hhCCCCCceeeHHHHHHHhhhcCCCCCC
Confidence 2222 225667889999987 4455 7999996654433 2210 01123
Q ss_pred CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC---CceEEEEEecccccccCChhHHHHHH
Q 043923 304 VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS---NAGLFCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
.+.+.+.++..++..... ...+++.+++++++++++.+.|+++|+++..+ .++.++|+.++.... .+..++.
T Consensus 236 ~~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 310 (355)
T TIGR03301 236 PPTHTVYAFAQALEELEA-EGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD----FDFDDFY 310 (355)
T ss_pred CcHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc----chHHHHH
Confidence 555665655555542110 11146677788889999999999888875433 245678888874211 1122445
Q ss_pred HHHHHhCCeEEeCCCCCCCCCCCeEEEEee-cCCHHHHHHHHHHHHHHH
Q 043923 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~-~~~~e~i~~~l~~L~~~l 428 (469)
.. ++++||.+.+|..+. .+++||++. ..++++++++++.|++++
T Consensus 311 ~~-l~~~gi~i~~~~~~~---~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 311 QE-LKERGFVIYPGKLTL---ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred HH-HHHCCEEEECCcccc---ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 55 456799999986543 268999984 358999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=224.77 Aligned_cols=294 Identities=13% Similarity=0.141 Sum_probs=204.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHH----hcCCCCEEEEccCCCcCh----HHHHhhhCCCE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFC----LAEPGEAFLLPTPYYPGF----DRDLKWRTGVE 159 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~----l~~~gd~Vl~~~P~y~~~----~~~~~~~~g~~ 159 (469)
..++|+++|++++. .++++|++|+|+++++..++.+ ++++||.|+++++.|++. ...++.. |++
T Consensus 69 ~~~~r~~la~~~~~-------~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~~ 140 (406)
T PRK09295 69 MENVRKQAALFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARV-GAE 140 (406)
T ss_pred HHHHHHHHHHHcCc-------CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHc-CcE
Confidence 56888999998861 1578999999999999999886 458999999999887653 3344555 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
++.++.+. ++.+|++++++++++ ++++|++++|+||||.+++.+ +|.++|+++|+++|+|++|+. .
T Consensus 141 v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~~~---~i~~~~~~~~~~vivD~a~~~---g 206 (406)
T PRK09295 141 LRVIPLNP--DGTLQLETLPALFDE------RTRLLAITHVSNVLGTENPLA---EMIALAHQHGAKVLVDGAQAV---M 206 (406)
T ss_pred EEEEecCC--CCCCCHHHHHHhcCC------CcEEEEEecchhcccccCCHH---HHHHHHHHcCCEEEEEccccc---C
Confidence 99999874 456889999988864 789999999999999999954 488889999999999999973 2
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh---------------------
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--------------------- 298 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--------------------- 298 (469)
..+ ..+.. .+..+++.|++|.+|.+| +||++++++.+.. +...
T Consensus 207 ~~~-~~~~~------------~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 270 (406)
T PRK09295 207 HHP-VDVQA------------LDCDFYVFSGHKLYGPTG--IGILYVKEALLQE-MPPWEGGGSMIATVSLTEGTTWAKA 270 (406)
T ss_pred ccc-cCchh------------cCCCEEEeehhhccCCCC--cEEEEEchHhHhh-CCCcccCCceeeeeecCCccccCCc
Confidence 221 22221 245578899999888555 8999986554322 1100
Q ss_pred ---cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC-ceEEEEEecccccccCCh
Q 043923 299 ---SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN-AGLFCWVDMRHLLRSNTF 373 (469)
Q Consensus 299 ---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~-~g~~~~v~~~~~~~~~~~ 373 (469)
...++.+.....++.+++.... +.-.+..+++.++..+++.+.|.++ ++++..+. .+..+.+.++..
T Consensus 271 ~~r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~------ 342 (406)
T PRK09295 271 PWRFEAGTPNTGGIIGLGAALDYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH------ 342 (406)
T ss_pred hhhcCCCCccHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCc------
Confidence 0112344444444444443211 1123455667777778888888877 67776542 223455555531
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCCCCC------CCCCeEEEEeecC-CHHHHHHHHHHHHHHHH
Q 043923 374 EAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANM-SEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~f~~------~~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~ 429 (469)
...++.. .|.++||.++.|..+.. ..++++|+|++.. +++|++.++++|+++..
T Consensus 343 -~~~~~~~-~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 343 -HAYDVGS-FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred -CHHHHHH-HHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 1123434 45788999999875542 1246899999874 89999999999988754
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=222.85 Aligned_cols=295 Identities=17% Similarity=0.149 Sum_probs=202.0
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
...+|++.+|++++ .+.+++++|+++|+..+++++..+||.|++..+.|......+... |++++.++.
T Consensus 100 ~~~~le~~la~~~g----------~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~-g~~~~~~~~- 167 (407)
T PRK07179 100 PKPQFEKKLAAFTG----------FESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAA-GAQAHPFRH- 167 (407)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHC-CCeEEEecC-
Confidence 46788888888875 345688999999999999999999999999999998887777666 888876653
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 167 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
.|++.+++.+++. ++++|++++|+||||.+.+. ++|.++|+++|+++|+||+|+...++... .++
T Consensus 168 ------~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~pl---~~I~~l~~~~~~~livDea~~~g~~g~~g-~g~ 232 (407)
T PRK07179 168 ------NDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAPL---ADIVDIAEEFGCVLVVDESHSLGTHGPQG-AGL 232 (407)
T ss_pred ------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCccccH---HHHHHHHHHcCCEEEEECcccccCcCCCC-Cch
Confidence 3789999988641 46788899999999999995 55888899999999999999743232221 122
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc---cc-cCcHHHHHHHHHHhcCchhh
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS---FG-LVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~---~~-~~s~~~q~~~~~~l~~~~~~ 322 (469)
....+ . .....+++.|+||++| + |+||+++++ .+.+.+..... +. +.++....++.++++..
T Consensus 233 ~~~~~-~------~~~vdi~~~S~sK~~g-~--~~G~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~--- 298 (407)
T PRK07179 233 VAELG-L------TSRVHFITASLAKAFA-G--RAGIITCPR-ELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI--- 298 (407)
T ss_pred HHhcC-C------CCCCCEEEeechHhhh-c--cCeEEEeCH-HHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH---
Confidence 21111 0 1123578899999997 2 689999854 44444443321 11 12222222233333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCC-CCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC-HCTE 401 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f-~~~~ 401 (469)
......+++++++++++.+.|+++|+++. +. +.++++.++.. ... +.+...|.++||.+..-... .+..
T Consensus 299 -~~~~~~~~~l~~~~~~l~~~L~~~g~~v~-~~-~~i~~l~~~~~------~~~-~~~~~~L~~~GI~~~~~~~p~~~~~ 368 (407)
T PRK07179 299 -ESADDRRARLHANARFLREGLSELGYNIR-SE-SQIIALETGSE------RNT-EVLRDALEERNVFGAVFCAPATPKN 368 (407)
T ss_pred -hcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CC-CCEEEEEeCCH------HHH-HHHHHHHHHCCceEeeecCCCCCCC
Confidence 11245677888999999999999888766 33 46777776531 112 23444455779984311100 1123
Q ss_pred CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 402 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 402 ~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+++||+++. ++++++++++++|++++++..
T Consensus 369 ~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 369 RNLIRLSLNADLTASDLDRVLEVCREARDEVD 400 (407)
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHhhC
Confidence 5789999986 599999999999999887643
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-25 Score=222.65 Aligned_cols=343 Identities=14% Similarity=0.121 Sum_probs=218.5
Q ss_pred CCeeeeeccccc-cC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 38 TGIIQMGLAENQ-LS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..+|+|+.+..- ++ ++.+.+++.+.......... .....|.+...+.+|++++|++++ .++.++
T Consensus 46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~-----~s~~~~g~~~~~~~l~~~la~~~g---------~~~~~~ 111 (407)
T PRK09064 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAG-----GTRNISGTNHYHVELERELADLHG---------KEAALV 111 (407)
T ss_pred ceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCC-----CcCcCccCHHHHHHHHHHHHHHhC---------CCcEEE
Confidence 457888876332 22 45566665542111000000 001123334456888888888874 245566
Q ss_pred EeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 116 LTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
+++| +++...++..+.. +++.|+.....|......+... |+++..++. .|++.+++.++.. ..++++
T Consensus 112 ~~sG-~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~-~~~~~~~~~-------~d~~~le~~l~~~--~~~~~~ 180 (407)
T PRK09064 112 FTSG-YVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRS-RCEKHIFRH-------NDVAHLEELLAAA--DPDRPK 180 (407)
T ss_pred ECcH-HHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHc-CCcEEEECC-------CCHHHHHHHHHhc--cCCCCe
Confidence 6665 4566666666544 7777776766666665556555 777766653 2678888877632 113678
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|++++|+||+|.+.+ +++|.++|++||+++|+||+|+...|+... .......+ + ..+.+++++||||+
T Consensus 181 ~v~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g-~g~~~~~~-~------~~~~div~~t~sKa 249 (407)
T PRK09064 181 LIAFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRG-GGIAERDG-L------MDRIDIIEGTLAKA 249 (407)
T ss_pred EEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCC-CChHHhcC-C------CCCCeEEEEecchh
Confidence 9999999999999998 555888889999999999999833344321 12222211 0 12347889999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhc-ccc---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMS-SFG---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~-~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
||++| ||++++++ +.+.+.... .+. ..++..+.++.+.++.. .+ ....++++.++++++.+.|+++|+
T Consensus 250 ~g~~G---G~~~~~~~-~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~---~~-~~~~~~~~~~~~~~l~~~L~~~g~ 321 (407)
T PRK09064 250 FGVMG---GYIAGSAA-LVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL---KE-SNEERERHQERAAKLKAALDAAGI 321 (407)
T ss_pred hhccC---ceEecCHH-HHHHHHHhCccccccCcCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99888 99998544 444444332 221 23444555554444321 21 133467788888999999999998
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
++.++.+ .++++.++.. ....++.+++++++||.+++...+.. .+.+++|++++. ++++++++++++|+++
T Consensus 322 ~~~~~~~-~iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 322 PVMPNES-HIVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred CCCCCCC-CEEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 8776655 5666766431 12345777777677999998654332 234689999976 4999999999999999
Q ss_pred HHhh
Q 043923 428 VDSI 431 (469)
Q Consensus 428 l~~~ 431 (469)
+++.
T Consensus 395 ~~~~ 398 (407)
T PRK09064 395 WARL 398 (407)
T ss_pred HHHc
Confidence 8754
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=218.16 Aligned_cols=298 Identities=11% Similarity=0.120 Sum_probs=208.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDT--SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~v 163 (469)
..++|+.++++++ .++ +.|++|+|+++++..++.++..+||.+++..+.+.+. ...++.. |++++.+
T Consensus 37 ~~~~r~~la~l~~--------~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~-g~~~~~v 107 (363)
T TIGR02326 37 VEQIRQQLLALAT--------AEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYL-GIPHHVV 107 (363)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEE
Confidence 4566777777775 444 4799999999999999999988998888777665444 3445655 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+.+. +..+|++.+++++++ .++++++.+++++||||..++. ++|.++|++||+++|+|++++ ++..+
T Consensus 108 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~tG~~~~i---~~I~~l~~~~g~~livD~~~~---~g~~~- 174 (363)
T TIGR02326 108 DTGE--VEPPDVVEVEAILAA----DPAITHIALVHCETTTGILNPI---EAVAKLAHRHGKVTIVDAMSS---FGGIP- 174 (363)
T ss_pred eCCC--CCCCCHHHHHHHHhh----CCCccEEEEEeecCCccccCcH---HHHHHHHHHcCCEEEEEcccc---ccCcc-
Confidence 9863 446789999998864 2256778899999999999995 568999999999999999876 54432
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--------------hc-----ccccC
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--------------MS-----SFGLV 304 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--------------~~-----~~~~~ 304 (469)
.++..+ +..+++.|++|+++ ++.++||++++++.+...... .. ..++.
T Consensus 175 ~~~~~~------------~~D~~~~s~~K~l~-~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~ 241 (363)
T TIGR02326 175 IDIAEL------------HIDYLISSANKCIQ-GVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTS 241 (363)
T ss_pred cchhhc------------CccEEEecCccccc-cCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCC
Confidence 233222 44577899999884 333479999966544332110 00 11234
Q ss_pred cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC---CceEEEEEecccccccCChhHHHHHHH
Q 043923 305 SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS---NAGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 305 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
+.+.+.++.++++.... ...+++.+++++++++++.+.|+++|+++..+ .++..+|+.++.... .+..++.+
T Consensus 242 ~~~~~~al~~al~~l~~-~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~ 316 (363)
T TIGR02326 242 PTHVVHAFAQALLELEK-EGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPD----YRFADFYQ 316 (363)
T ss_pred cHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCC----CCHHHHHH
Confidence 55666665555533210 11246677889999999999999888876543 344567777764211 01223455
Q ss_pred HHHHhCCeEEeCCCCCCCCCCCeEEEEe-ecCCHHHHHHHHHHHHHHHH
Q 043923 382 KIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+ +++||.+.||..+. .+++||++ +..+.+++++++++|++++.
T Consensus 317 ~L-~~~gi~v~~g~~~~---~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 317 RL-KEQGFVIYPGKVSQ---VDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred HH-HHCCEEEECCcCCC---CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 54 56799999997652 46899996 54699999999999998763
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=224.84 Aligned_cols=333 Identities=16% Similarity=0.127 Sum_probs=216.6
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ .+.++ ++.+.+++.+..... + .....|+...+ .+|.+.++++++ . ..+
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~-----~----~~~~~~~~~~~-~~la~~l~~~~~------~-~~~ 103 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATL-----G----HVSNLFATEPQ-IALAERLVELLG------A-PEG 103 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhc-----c----CccCccCCHHH-HHHHHHHHHhCC------C-CCC
Confidence 34568999875 34443 356666665531110 0 01124654433 455555555543 1 135
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCC-CEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCCCcccCHHHH
Q 043923 112 SKIVLTAGATSANETLMFCLAEPG-EAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLNGFQITETAI 178 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~g-d~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~d~~~l 178 (469)
+++++++|+++|+..+++.+..+| +.|+..+++|+++........|.. +..+|. .|++.+
T Consensus 104 ~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 176 (398)
T PRK03244 104 GRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDAL 176 (398)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHH
Confidence 799999999999999999766566 467777789887754433221322 222221 267888
Q ss_pred HHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHH-HHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccccc
Q 043923 179 EEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNE-LNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 257 (469)
Q Consensus 179 ~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~-l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~ 257 (469)
++.+.+ ++++|+++.++||+|.+++.++ +++|.++|++||+++|+||+|.++...+..+ . .....
T Consensus 177 ~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~-~~~~~------ 242 (398)
T PRK03244 177 AAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-A-HQHDG------ 242 (398)
T ss_pred HHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-h-hhhhC------
Confidence 887743 7889999888999999987655 9999999999999999999998743333211 1 11111
Q ss_pred CCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 043923 258 TQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 258 ~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 335 (469)
..+++ .+|||++| +|+|+||++++++ +.+.+.. ....+..+++.+.++.++|+.... ....+++.+
T Consensus 243 --~~pDi---~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~ 310 (398)
T PRK03244 243 --VTPDV---VTLAKGLG-GGLPIGACLAFGP-AADLLTPGLHGSTFGGNPVACAAALAVLDTIAS-----EGLLENAER 310 (398)
T ss_pred --CCCCE---EEEchhhh-CCcccEEEEEcHH-HHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHH
Confidence 12233 38899999 9999999999655 4444433 122234678888888888652211 123445555
Q ss_pred HHHHHHHHHHhcCCcee--cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-C
Q 043923 336 RHRKLVSGLEKAGISCL--KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M 412 (469)
Q Consensus 336 ~~~~l~~~L~~~g~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~ 412 (469)
..+++.+.|++++..+. ....|+++|+.++.. ....+...++ ++||.+.+.. .+.+|++++. +
T Consensus 311 ~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~p~~~~ 376 (398)
T PRK03244 311 LGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAR-EAGFLVNAVA------PDVIRLAPPLII 376 (398)
T ss_pred HHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-------HHHHHHHHHH-HCCeEEeecC------CCEEEEECCCcC
Confidence 66778888887654321 223578999998631 2234555555 6699998742 4689999877 5
Q ss_pred CHHHHHHHHHHHHHHHHhhc
Q 043923 413 SEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 413 ~~e~i~~~l~~L~~~l~~~~ 432 (469)
+++++++++++|++++++..
T Consensus 377 t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 377 TDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999997643
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=222.34 Aligned_cols=330 Identities=12% Similarity=0.121 Sum_probs=215.8
Q ss_pred eeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCC----cHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 40 IIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHG----LPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 40 ~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
.+.|+.+....+++.+.+++.+...... ......|+...+ ..++++.++++++ .++++|+
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~ia~~~~--------~~~~~v~ 81 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTRSN--------ANRGGAYESSRRADQVVDDAREAVADLLN--------ADPPEVV 81 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcC--------CCCCCCchHHHHHHHHHHHHHHHHHHHcC--------CCCCeEE
Confidence 5788877666666666666554211000 011123443323 4577888888775 4566899
Q ss_pred EeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChH----HHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc
Q 043923 116 LTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFD----RDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR 188 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 188 (469)
+++|+++++..++.++ .++||+|++..|.|.+.. ..++.. |++++.++.+.+ ++.+|++++++++++
T Consensus 82 ~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~~~~~~~~~~~-~~~~~~~~l~~~i~~---- 155 (397)
T TIGR01976 82 FGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERA-GAKVKWARVDEA-TGELHPDDLASLLSP---- 155 (397)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhc-CCEEEEEecccc-CCCcCHHHHHHhcCC----
Confidence 9999999998877775 689999999999887653 334445 999999998742 467899999998864
Q ss_pred CCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEc
Q 043923 189 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY 268 (469)
Q Consensus 189 ~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~ 268 (469)
++++|++++|+||||.+++ +++|.++|++||+++|+|+++. .+ .....+.. .+..+++.
T Consensus 156 --~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~---~~-~~~~~~~~------------~~~d~~~~ 214 (397)
T TIGR01976 156 --RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHY---AP-HGLIDVQA------------TGADFLTC 214 (397)
T ss_pred --CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhh---cc-ccCCCHHH------------cCCCEEEE
Confidence 7899999999999999988 5558888899999999999985 22 11122211 24456678
Q ss_pred cCccccCCCcceEEEEEecCHHHHHHHHHhccc------------ccCcHHH---HHHHHHHhcCchh---------hHH
Q 043923 269 SLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF------------GLVSSQT---QYLLSALLSDKKF---------TQN 324 (469)
Q Consensus 269 S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~------------~~~s~~~---q~~~~~~l~~~~~---------~~~ 324 (469)
|++|++| .|+||++++++.+. .+...... ++.+... ..++..++.+.+. +..
T Consensus 215 s~~K~~g---~~~G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~ 290 (397)
T TIGR01976 215 SAYKFFG---PHMGILWGRPELLM-NLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVA 290 (397)
T ss_pred echhhcC---CceEEEEEcHHHHh-hCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhH
Confidence 9999885 36899998655433 22221110 1122222 2233333322110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CceecC----CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 325 YISENKKRLKQRHRKLVSGLEKAG-ISCLKS----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~----~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
.+++.+++..+..+++.+.|++++ +++..+ ..+.++.+.++.. +..++.++| .++||.++.|..|..
T Consensus 291 ~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L-~~~gI~v~~~~~~~~ 362 (397)
T TIGR01976 291 SFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL-------PPQRVVRRL-ADQGIDAWAGHFYAV 362 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc-------CHHHHHHHH-HHCCeEEEeCccchH
Confidence 245667777778888889998874 777654 1334666666531 122456555 567999998876541
Q ss_pred ---------CCCCeEEEEeec-CCHHHHHHHHHHH
Q 043923 400 ---------TEPGWFRVCFAN-MSEDTLKLSMQRL 424 (469)
Q Consensus 400 ---------~~~~~iRi~~~~-~~~e~i~~~l~~L 424 (469)
...+++|||+.. .+++++++++++|
T Consensus 363 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 363 RLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 134689999976 4899999998864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=221.43 Aligned_cols=307 Identities=16% Similarity=0.206 Sum_probs=214.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-----CC-CCEEEEccCCCcChHHH---
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-----EP-GEAFLLPTPYYPGFDRD--- 151 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~-gd~Vl~~~P~y~~~~~~--- 151 (469)
.|+. .+...+++++++++... + . .++++|++|+|+++++..++.++. ++ ++.|++..+.|+.+...
T Consensus 35 ~~~~-~~~~~l~~a~~~~~~~~-~--~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~ 109 (382)
T TIGR03403 35 QFGT-ATHPAIAEALDKLYKGI-N--A-RDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAF 109 (382)
T ss_pred HHHH-HHHHHHHHHHHHHHHHc-C--c-CCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHH
Confidence 3543 35688999999888522 1 1 267899999999999999998762 45 46899988777665544
Q ss_pred HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q 043923 152 LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDE 231 (469)
Q Consensus 152 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~De 231 (469)
++.. |++++.+|++. ++.+|++++++++++ +++++++++|+||||.+++.+ +|.++|+++|+++++|+
T Consensus 110 ~~~~-G~~v~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~~~---~I~~la~~~g~~~ivD~ 177 (382)
T TIGR03403 110 LESL-GVEVTYLPINE--QGTITAEQVREAITE------KTALVSVMWANNETGMIFPIK---EIGEICKERGVLFHTDA 177 (382)
T ss_pred HHHC-CCEEEEEecCC--CCCCCHHHHHHhccc------CCeEEEEEcccCCCccccCHH---HHHHHHHHcCCEEEEec
Confidence 3445 99999999874 356889999988865 788999999999999999965 57888889999999999
Q ss_pred cccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-HHHHH-----HHhcccccCc
Q 043923 232 IYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-VVAAA-----TKMSSFGLVS 305 (469)
Q Consensus 232 ay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-~~~~~-----~~~~~~~~~s 305 (469)
++. ++..+ ..+. ..+..+++.|++|.+|.+| +|+++..+.. +...+ ......++++
T Consensus 178 a~~---~g~~~-~~~~------------~~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~ 239 (382)
T TIGR03403 178 VQA---IGKIP-VDVQ------------KAGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLN 239 (382)
T ss_pred hhh---cCCCc-cCcc------------ccCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcC
Confidence 986 32221 1211 1134477889999888777 5777664332 10100 0001234567
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC---ceEEEEEecccccccCChhHHHHHHH
Q 043923 306 SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 306 ~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
.+.+.++..++... .++++..++++++.++++.+.|.++ ++++..+. ...++.+.++.. +..++..
T Consensus 240 ~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 309 (382)
T TIGR03403 240 VPYIVAMGEAMRLA---NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-------EGEAMLW 309 (382)
T ss_pred hHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-------CHHHHHH
Confidence 77776666666422 3446677788888999999999876 67777653 133555666531 1223444
Q ss_pred HHHHhCCeEEeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 382 KIVYDVKLNISPGSSCHCT-----------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~f~~~-----------------~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
. |.++||.++.|+.|... ..+.+|+|++. .+++|+++++++|++++++.++
T Consensus 310 ~-L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 310 D-LNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred h-hccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4 45779999988765310 13579999987 4999999999999999987665
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=221.97 Aligned_cols=289 Identities=16% Similarity=0.207 Sum_probs=200.6
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhcC---CCCEEEEccCCCcChH----HHHhhhCCC
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCLAE---PGEAFLLPTPYYPGFD----RDLKWRTGV 158 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G~~~al~~~~~~l~~---~gd~Vl~~~P~y~~~~----~~~~~~~g~ 158 (469)
...++++.++++++ .+ +++|++|+|+++++..++.++.. +||+|+++++.|.... ..++.. |+
T Consensus 44 ~~~~~~~~la~~~~--------~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~-g~ 114 (373)
T cd06453 44 AYEAAREKVARFIN--------APSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERT-GA 114 (373)
T ss_pred HHHHHHHHHHHHhC--------CCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhc-Cc
Confidence 35678888888886 44 78999999999999999999877 8999999999998753 223345 99
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+++.++.+ .++.+|++++++.+.+ ++++|++++|+||||.+.+.+ +|+++|+++|++||+|++|+.
T Consensus 115 ~~~~v~~~--~~~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~---~i~~~~~~~~~~li~D~a~~~--- 180 (373)
T cd06453 115 KLKVVPVD--DDGQLDLEALEKLLTE------RTKLVAVTHVSNVLGTINPVK---EIGEIAHEAGVPVLVDGAQSA--- 180 (373)
T ss_pred EEEEeecC--CCCCcCHHHHHHHhcC------CceEEEEeCcccccCCcCCHH---HHHHHHHHcCCEEEEEhhhhc---
Confidence 99999987 3456899999998865 789999999999999999955 588888899999999999873
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc------------------
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS------------------ 300 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~------------------ 300 (469)
...+ ..+. ..+..+++.|++|.++. .++|++++++..+. .+.....
T Consensus 181 ~~~~-~~~~------------~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (373)
T cd06453 181 GHMP-VDVQ------------DLGCDFLAFSGHKMLGP--TGIGVLYGKEELLE-EMPPYGGGGEMIEEVSFEETTYADL 244 (373)
T ss_pred Ccee-eecc------------ccCCCEEEeccccccCC--CCcEEEEEchHHhh-cCCCeecCCCccccccccccccCCC
Confidence 2111 1111 11345667799999974 56899998655433 2222110
Q ss_pred ---c--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC--ceEEEEEecccccccCC
Q 043923 301 ---F--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN--AGLFCWVDMRHLLRSNT 372 (469)
Q Consensus 301 ---~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~--~g~~~~v~~~~~~~~~~ 372 (469)
+ ++++.....++.+++.... ...++..+++.++.++++.+.|+++ ++++..+. .+.++++.++..
T Consensus 245 ~~~~~~~t~~~~~~~al~~al~~l~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 317 (373)
T cd06453 245 PHKFEAGTPNIAGAIGLGAAIDYLE--KIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI----- 317 (373)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-----
Confidence 1 1233333333333332111 1123556667777888899999887 67766322 245677776531
Q ss_pred hhHHHHHHHHHHHhCCeEEeCCCCCCC------CCCCeEEEEeec-CCHHHHHHHHHHH
Q 043923 373 FEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFAN-MSEDTLKLSMQRL 424 (469)
Q Consensus 373 ~~~~~~l~~~ll~~~GI~v~pg~~f~~------~~~~~iRi~~~~-~~~e~i~~~l~~L 424 (469)
+..++.+.+ .++||.+.+|..+.. ..++++|++++. .++++++++++.|
T Consensus 318 --~~~~i~~~l-~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 318 --HPHDVATIL-DQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred --CHHHHHHHH-HHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 122444554 567999988875432 235789999986 4899999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=217.39 Aligned_cols=300 Identities=13% Similarity=0.121 Sum_probs=202.5
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEEe
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v 163 (469)
..+.+|++++|++++ .++ .++++++++|+..++..+.. +++.|+.....|......+... |+++..+
T Consensus 90 ~~~~~Le~~la~~~g---------~~~-~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~-g~~~~~~ 158 (402)
T TIGR01821 90 IPHVELEAELADLHG---------KES-ALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHS-GAEKFIF 158 (402)
T ss_pred HHHHHHHHHHHHHhC---------CCe-EEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHc-CCeEEEE
Confidence 345788888888875 233 45555558888888887764 6777776666666665666655 8877665
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+. .|++++++.++.. ...++++|++++|+||||.+.+ +++|.++|++||+++|+||+|+...++...
T Consensus 159 ~~-------~d~~~l~~~l~~~--~~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g- 225 (402)
T TIGR01821 159 RH-------NDVAHLEKLLQSV--DPNRPKIIAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRG- 225 (402)
T ss_pred CC-------CCHHHHHHHHHhc--cCCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCC-
Confidence 43 2667788777532 1125789999999999999998 555888899999999999999843343221
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc-c---ccCcHHHHHHHHHHhcCc
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-F---GLVSSQTQYLLSALLSDK 319 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~-~---~~~s~~~q~~~~~~l~~~ 319 (469)
........ . ..+.+++++||||+||++| ||++++++ +.+.+..... + ...++..+.++.+.|+..
T Consensus 226 ~g~~~~~~-~------~~~~div~~t~sKa~g~~G---G~i~~~~~-~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~ 294 (402)
T TIGR01821 226 GGIAERDG-L------MHRIDIIEGTLAKAFGVVG---GYIAASRK-LIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL 294 (402)
T ss_pred Cccchhcc-C------CCCCeEEEEechhhhccCC---ceeecCHH-HHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh
Confidence 11111111 0 1134688899999999888 99988544 4444443322 1 124556666666666532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
.. . ...++.+.++++++.+.|+++|+++.++.+ .++.+.++.. ....++...+++++||.+++......
T Consensus 295 ~~---~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~i~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~ 363 (402)
T TIGR01821 295 KE---S-QDLRRAHQENVKRLKNLLEALGIPVIPNPS-HIVPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTV 363 (402)
T ss_pred hc---C-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCC-CEEEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCC
Confidence 21 1 334555667888899999998988777665 4566665421 12345777777677999998654332
Q ss_pred -CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 400 -TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 400 -~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+..++|+++.. .+++++++++++|++++++.
T Consensus 364 ~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 364 PRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 234689999976 49999999999999998754
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=217.78 Aligned_cols=305 Identities=14% Similarity=0.139 Sum_probs=205.7
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
..+.++++.+|++++ .+++++++|+++++..++.+++++||.|+++.+.|......+... |++++.++.
T Consensus 63 ~~~~~l~~~lA~~~g----------~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~~v~~ 131 (387)
T PRK09331 63 PPIADFHEDLAEFLG----------MDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERA-GLNVREVPK 131 (387)
T ss_pred hHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeC
Confidence 357999999999986 346889999999999999999999999999999988777677766 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHh-cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 166 TSLNGFQITETAIEEAYQLAQK-RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~-~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
+.+.++.+|++.+++++++... ..+++++|++++|+||||...+ +++|+++|+++|+++|+|++|+. +..+ .
T Consensus 132 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~---g~~~-~ 204 (387)
T PRK09331 132 TGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTV---GRMP-V 204 (387)
T ss_pred ccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCccc---CCcC-C
Confidence 4234677899999999875311 1247899999999999998877 55588899999999999999973 2211 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--------cc-cCcHHHHHHHHHH
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--------FG-LVSSQTQYLLSAL 315 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--------~~-~~s~~~q~~~~~~ 315 (469)
+... .+..+++.|++|+++ ++.|+||++++++.+....+.... ++ ........++...
T Consensus 205 ~~~~------------~g~D~~~~s~~K~l~-~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa 271 (387)
T PRK09331 205 DGKK------------LGADFIVGSGHKSMA-ASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMAS 271 (387)
T ss_pred CHHH------------cCCCEEEeeCccccc-CCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHH
Confidence 2221 245678899999998 566999999965544332222111 11 1111111111122
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec--CCceEEEEEecccccc--cCChhHHHHHHHHHHHhCCeE
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK--SNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~--~~~g~~~~v~~~~~~~--~~~~~~~~~l~~~ll~~~GI~ 390 (469)
+ +...+..+ ..++..++.+++.+.|+++ |+++.. +....++.++.+.... ........++.+.| +++||.
T Consensus 272 l---~~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~ 346 (387)
T PRK09331 272 F---PHVVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEEL-KKRGIH 346 (387)
T ss_pred H---HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHH-HHcCce
Confidence 2 11122232 3344455667889999999 888773 2233566666652110 00001112455555 567998
Q ss_pred EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 391 ISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
..+.. ....+|+.....+++++++++++|++++++.
T Consensus 347 ~~~~~-----~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 347 GIKPG-----ATKEFKLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred EEccC-----CceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 44321 2445777764469999999999999998764
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=214.12 Aligned_cols=300 Identities=15% Similarity=0.170 Sum_probs=205.8
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDT--SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~ 162 (469)
-..++++.++++++ .++ +.|++++|+++++..++.++..+||.|++..++|.+. ...++.. |++++.
T Consensus 38 ~~~~~~~~l~~l~~--------~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~-g~~~~~ 108 (368)
T PRK13479 38 LTASVRAKLVAIAT--------GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYL-GIAHVV 108 (368)
T ss_pred HHHHHHHHHHHHhC--------CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHc-CCcEEE
Confidence 35777788888775 333 5688999999999999999999999999998887655 3556666 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+. ++.+|++++++++++ .+++++|++++|+||||...+.+ +|.++|+++|+++|+|+++. ++..+
T Consensus 109 i~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~tG~~~~~~---~i~~l~~~~~~~livDa~~~---~g~~~ 176 (368)
T PRK13479 109 LDTGE--DEPPDAAEVEAALAA----DPRITHVALVHCETTTGILNPLD---EIAAVAKRHGKRLIVDAMSS---FGAIP 176 (368)
T ss_pred EECCC--CCCCCHHHHHHHHHh----CCCCcEEEEEcccCccccccCHH---HHHHHHHHcCCEEEEEcccc---cCCcc
Confidence 99863 356889999998864 12567889999999999999955 58888899999999996654 54332
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEecCHHHHHHHHHhc-c------------------cc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKMS-S------------------FG 302 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~~~~~~~~~~~~~~-~------------------~~ 302 (469)
.++... +..+++.|++|++ |.+| +||++++++.+.. +.... . ..
T Consensus 177 -~~~~~~------------~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (368)
T PRK13479 177 -IDIAEL------------GIDALISSANKCIEGVPG--FGFVIARRSELEA-CKGNSRSLSLDLYDQWAYMEKTGQWRF 240 (368)
T ss_pred -cccccc------------CceEEEecCccccccCCC--ceEEEECHHHHHH-hhcCCCCeeecHHHHHhhhcccCCCCC
Confidence 222221 3446678999976 5666 6999996654433 22111 0 01
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecccccccCChhHHHHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
+.+.....++.+++..... ..++++..+++.++++++.+.|+++|+++..+. .+..+.+.++.... .+..++
T Consensus 241 t~~~~~~~~l~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l 315 (368)
T PRK13479 241 TPPTHVVAAFYQALLELEE-EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPA----YDFKEF 315 (368)
T ss_pred CCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCC----cCHHHH
Confidence 3444444444444432110 112466678889999999999999998765332 21223333332110 112245
Q ss_pred HHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ecCCHHHHHHHHHHHHHHHHhhc
Q 043923 380 WKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
..++. ++||.+.+|..+ ..+++|++. +..+++++++++++|++++++..
T Consensus 316 ~~~L~-~~gi~v~~g~~~---~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 316 YERLK-EQGFVIYPGKLT---QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred HHHHH-HCCEEEecCCCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 66655 569999988644 246899986 65699999999999999998664
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=215.85 Aligned_cols=310 Identities=15% Similarity=0.122 Sum_probs=223.4
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVP 162 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~ 162 (469)
.+..++.+++.+.+.+.++ .+. +.+++++|+++++..++..++++||+|++.++.|... ...++.. |++++.
T Consensus 38 ~~~~~~~~~~~~~l~~~~g----~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~-g~~v~~ 112 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFK----TKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRL-NFDVDV 112 (401)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHc-CCceEE
Confidence 3557788888888777766 344 4688899999999999999999999999999888655 3555666 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+.. ..+|++++++++++. ..+++++|++++++||||.+++.+++.++++ |+++|+++|+|++++ ++..+
T Consensus 113 v~~~~~--~~~~~~~l~~~l~~~--~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s---~g~~~ 184 (401)
T PLN02409 113 VESPWG--QGADLDILKSKLRQD--TNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSS---IGALD 184 (401)
T ss_pred EECCCC--CCCCHHHHHHHHhhC--cCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEcccc---cCCcc
Confidence 998643 247889999988741 0126899999999999999999888777766 999999999999987 33221
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc------------------c--cc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS------------------S--FG 302 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~------------------~--~~ 302 (469)
..+. ..+..+++.|.+|+++.| .++||++.+++.+.. +.... . ..
T Consensus 185 -id~~------------~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 249 (401)
T PLN02409 185 -FRMD------------EWGVDVALTGSQKALSLP-TGLGIVCASPKALEA-SKTAKSPRVFFDWADYLKFYKLGTYWPY 249 (401)
T ss_pred -cccc------------ccCccEEEEcCccccCcC-CCcceeEECHHHHHH-HhcCCCCCeecCHHHHHHHHhcCCCCCC
Confidence 1111 224557778889999744 479999986655433 22110 0 11
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecccccccCChhHHHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLRSNTFEAEME 378 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~----~g~~~~v~~~~~~~~~~~~~~~~ 378 (469)
+++...+.++..+++... +..++..++++++..+++.+.|+++|+++..+. .+..+++.++...+ ..+
T Consensus 250 Tp~~~~~~al~~al~~~~--~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~------~~~ 321 (401)
T PLN02409 250 TPSIQLLYGLRAALDLIF--EEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGID------SAE 321 (401)
T ss_pred CccHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCC------HHH
Confidence 344455555555554321 233677788889999999999998888876542 22446677764322 225
Q ss_pred HHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 379 LWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+...+++++||.+.+|.. ......|||+... .+++++..++.+|++++++...
T Consensus 322 l~~~l~~~~~i~i~~G~~--~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g~ 375 (401)
T PLN02409 322 IVKNAWKKYNLSLGLGLN--KVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVGY 375 (401)
T ss_pred HHHHHHHhCCEEEEcCCC--cccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 667788899999998863 2245789999866 5999999999999999987653
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-25 Score=216.99 Aligned_cols=316 Identities=13% Similarity=0.130 Sum_probs=220.0
Q ss_pred ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHH
Q 043923 51 SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFC 130 (469)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~ 130 (469)
++..+.+++....+. ....|....+..++++++++++.+.++. +.+.+++++|+|+++++..++.+
T Consensus 11 ~~~~~~~~~~~~~n~------------~~~~y~~~~~~~~le~~~~~~~~~~~g~--~~~~~~~~~t~ggt~a~~~al~~ 76 (345)
T cd06450 11 PPALLLEMLTSAKNA------------IDFTWDESPAATEMEAEVVNWLAKLFGL--PSEDADGVFTSGGSESNLLALLA 76 (345)
T ss_pred HHHHHHHHHHHhcCC------------CCcccccCchhHHHHHHHHHHHHHHhCC--CCCCCCEEEeCChhHHHHHHHHH
Confidence 445566666654322 1233777788899999999999888762 22456899999999999999988
Q ss_pred hcC------------C--CCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 131 LAE------------P--GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 131 l~~------------~--gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+.. + ++.|+++.++|..+...+... |.+++.+|++++ +.+|++++++++++....+.++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~-g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~ 153 (345)
T cd06450 77 ARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL-DVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVV 153 (345)
T ss_pred HHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHH-hcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEE
Confidence 742 2 348888999999888888877 999999998753 37899999999976444455678889
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++|+||||.+.+ +++|+++|+++|+++++|++|+.+.+........ . .. ..+...+..|++|+++
T Consensus 154 ~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~-~~-------~~~~d~~~~s~~K~l~- 219 (345)
T cd06450 154 ATAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--D-FG-------IERVDSISVDPHKYGL- 219 (345)
T ss_pred EecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--h-cC-------ccccCEEEEchhHhhC-
Confidence 9999999999866 5668899999999999999998654322111110 0 00 1133455679999775
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec-C
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK-S 354 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~-~ 354 (469)
++.++|+++.+ .+.+.++...+... .+++.+++..+.++++.+.|.++ ++++.. +
T Consensus 220 ~p~g~g~~~~~------------------~~~~~~~l~~l~~~-----g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 276 (345)
T cd06450 220 VPLGCSAVLVR------------------ALKLWATLRRFGRD-----GYGEHIDRIVDLAKYLAELIRADPGFELLGEP 276 (345)
T ss_pred CCcchHHHHHH------------------HHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 77788887763 33444444444332 24666777777888899999887 676654 4
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-C-CHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M-SEDTLKLSMQRLKA 426 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~-~~e~i~~~l~~L~~ 426 (469)
.. .++.+.++.... .-.+..++.+.|. ++|+.+.++..+. .++++|++++. . +++++++++++|++
T Consensus 277 ~~-~iv~f~~~~~~~--~~~~~~~i~~~L~-~~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 277 NL-SLVCFRLKPSVK--LDELNYDLSDRLN-ERGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred ce-eEEEEEECCcch--hhHHHHHHHHHHH-hcCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 44 455555553100 0012234555554 6666666554443 45789999986 3 89999999999976
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=215.70 Aligned_cols=277 Identities=18% Similarity=0.166 Sum_probs=186.7
Q ss_pred CCcEEEeCChHHHHHHHHHHh----cCCCC----EEEEccCCCcChHHHHhhhCCCEEEE---eeccCCCCcc----cCH
Q 043923 111 TSKIVLTAGATSANETLMFCL----AEPGE----AFLLPTPYYPGFDRDLKWRTGVEIVP---IQCTSLNGFQ----ITE 175 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l----~~~gd----~Vl~~~P~y~~~~~~~~~~~g~~~~~---v~~~~~~~~~----~d~ 175 (469)
.+++++++|+++|+..+++++ ..+|| +|++.++.|+++...+....+..... .|.. .++. .|+
T Consensus 88 ~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~ 165 (389)
T PRK01278 88 ADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLV--PGFDQVPFGDI 165 (389)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCC--CCceEeCCCCH
Confidence 578999999999999998876 34565 89999999998876655442322111 0111 1222 478
Q ss_pred HHHHHHHHHHHhcCCceeEEEEecCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 176 TAIEEAYQLAQKRHLKVKGVLVTNPSNPLG-TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 176 ~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
+.+++.+++ ++++|+++.++||+| .++|.+.+++|.++|++||+++|+||+|.++.+.+..+ .. ....
T Consensus 166 ~~l~~~l~~------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~-~~~~--- 234 (389)
T PRK01278 166 EALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF-AH-EWAG--- 234 (389)
T ss_pred HHHHHhhCC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce-ee-cccC---
Confidence 899888764 788888886688888 78999999999999999999999999999754434321 11 1111
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcC---chhhHHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSD---KKFTQNYISEN 329 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~ 329 (469)
..+. +.|+||.++ +|+|+||++++++ +.+.+..... ..+.+++.|.++.+.|+. .++ .++++++
T Consensus 235 -----~~pd---i~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~-~~~~~~~ 303 (389)
T PRK01278 235 -----VTPD---IMAVAKGIG-GGFPLGACLATEE-AAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF-LDNVQRM 303 (389)
T ss_pred -----CCCC---EEEEehhcc-CCcceEEEEEcHH-HHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH-HHHHHHH
Confidence 1112 348999998 9999999999654 4443332221 123677888887666643 222 3344444
Q ss_pred HHHHHHHHHHHHHHHHhcC-C-ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEE
Q 043923 330 KKRLKQRHRKLVSGLEKAG-I-SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 407 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~g-~-~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi 407 (469)
.++++++.+.+.+ +.. + ....+ .|.++|++++. +..+++.+++++ ||.+.|+. .+++|+
T Consensus 304 ~~~l~~~l~~l~~---~~~~~~~~v~g-~G~~~~i~~~~--------~~~~~~~~l~~~-GV~~~p~~------~~~lR~ 364 (389)
T PRK01278 304 GLYLKQKLEGLVD---RFPDVIEEVRG-KGLLLGLKCVV--------PNRDLVQALRDE-GLLTVGAG------DNVVRL 364 (389)
T ss_pred HHHHHHHHHHHHh---hCCCceeeEec-ccEEEEEEEec--------CHHHHHHHHHHC-CeEEeecC------CCEEEE
Confidence 5555544443322 222 2 22233 56888887742 133577777755 99999873 468999
Q ss_pred Eeec-CCHHHHHHHHHHHHHHHHh
Q 043923 408 CFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 408 ~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+++. ++++++++++++|++++++
T Consensus 365 ~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 365 LPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred eCCcccCHHHHHHHHHHHHHHHHh
Confidence 9765 5999999999999998864
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=217.07 Aligned_cols=327 Identities=15% Similarity=0.134 Sum_probs=218.0
Q ss_pred CCeeeeeccccccChHH-HHHHHhcCCCccccccCCcccccccccCCC-----CCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLAENQLSFDL-LESWLDRNPDAAGFKRDGQSIFRELALFQD-----YHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
.++++|+++...++++. +.++..+. . ....|.+ ..|.+++++++++++.+.++ .+.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~-~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g----~~~ 81 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN-E-------------FYTAYTPYQPEISQGRLQALFELQTMLCELTG----MDV 81 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc-c-------------CcccCCCCChhhhhhHHHHHHHHHHHHHHHHC----CCc
Confidence 35699999998887544 44444332 1 1123444 57899999999999998876 455
Q ss_pred CcEEEeC-ChHHHHHHHHHHhcCC--CCEEEEccCCCcChHHHHhhhCC----CEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 112 SKIVLTA-GATSANETLMFCLAEP--GEAFLLPTPYYPGFDRDLKWRTG----VEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 112 ~~i~~t~-G~~~al~~~~~~l~~~--gd~Vl~~~P~y~~~~~~~~~~~g----~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
+++++++ |++++...++.++..+ ||.|++++|.|+.+...+... | ++++.++.+. ++.+|++++++++.+
T Consensus 82 ~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~-~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~ 158 (398)
T cd00613 82 ANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTR-GEPLGIEVVEVPSDE--GGTVDLEALKEEVSE 158 (398)
T ss_pred cceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHh-cccCCcEEEEeccCC--CCCcCHHHHHHhcCC
Confidence 5676666 5555655566666666 999999999999998877765 6 8999888763 456889999988754
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
++++|++++|+ |||.+. +.+++|.++|++||+++|+|+++.... .. .... ..+..
T Consensus 159 ------~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~--~~--~~~~------------~~~~d 213 (398)
T cd00613 159 ------EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLT--GL--KPPG------------EYGAD 213 (398)
T ss_pred ------CeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEecccccc--CC--CChH------------HcCCC
Confidence 78999999885 899984 346889999999999999999875321 11 1111 22467
Q ss_pred EEEccCccccCCC----cceEEEEEecCHHHHHHHHH------------------------------hcc--cccCcHHH
Q 043923 265 HIVYSLSKDLGLP----GFRVGAIYSNDDMVVAAATK------------------------------MSS--FGLVSSQT 308 (469)
Q Consensus 265 i~i~S~SK~~g~~----GlRiG~li~~~~~~~~~~~~------------------------------~~~--~~~~s~~~ 308 (469)
+++.|++|++ +| |+|+||++.++..+. .+.. ... +.......
T Consensus 214 ~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~ 291 (398)
T cd00613 214 IVVGNLQKTG-VPHGGGGPGAGFFAVKKELVR-FLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLA 291 (398)
T ss_pred EEEeeccccC-CCCCCCCCceeEEEEhhhhHh-hCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHH
Confidence 8889999998 56 799999999654433 2100 000 11011223
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE--EEEecccccccCChhHHHHHHHHHHHh
Q 043923 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--CWVDMRHLLRSNTFEAEMELWKKIVYD 386 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~--~~v~~~~~~~~~~~~~~~~l~~~ll~~ 386 (469)
+.+...+.... ...+++.+++++++++++.+.|++++... .+.+.++ ++++++... . .+..+++..|+ +
T Consensus 292 ~~a~~~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~---~-~~~~~~~~~L~-~ 362 (398)
T cd00613 292 LMAAMYIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY---G-IRAEDLAKALI-D 362 (398)
T ss_pred HHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc---h-HHHHHHHHhhh-h
Confidence 33333222221 33466778889999999999999875443 2223333 566665310 0 12345666665 5
Q ss_pred CCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHH
Q 043923 387 VKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 424 (469)
Q Consensus 387 ~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L 424 (469)
+||.+.... +...+.+|+++.. .+++|+++++++|
T Consensus 363 ~gi~~~~~~---~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 363 GGFHAPTMY---LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cCccccccc---cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 699764321 2235789999977 4999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-24 Score=214.82 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=162.4
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHh----hhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLK----WRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~----~~~g~~~~~ 162 (469)
...+|++.+|++++ .+.+++++|+++|+..++.+++++||.|+++.|.|..+...+. ...|++++.
T Consensus 77 t~~~LE~~lA~l~g----------~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~ 146 (418)
T PLN02242 77 TVLNLGRQMAALEG----------TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTF 146 (418)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEE
Confidence 56899999999885 4567899999999999999999999999999999988866542 213888777
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+ |++++++++++ .++++|++++|+||||.+.+ +++|+++|+++|++||+|++|..+.+
T Consensus 147 ~d~~-------d~e~l~~~i~~-----~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~---- 207 (418)
T PLN02242 147 VDIT-------DLEAVKKAVVP-----GKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVL---- 207 (418)
T ss_pred cCCC-------CHHHHHHhcCc-----CCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCC----
Confidence 6542 78888888754 14899999999999999986 56688899999999999999975432
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcce-EEEEEecCHHHHHHHHHhcc----cccCcHHHHHHHHHHhc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFR-VGAIYSNDDMVVAAATKMSS----FGLVSSQTQYLLSALLS 317 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlR-iG~li~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~ 317 (469)
....+ +.+++++|+||.++.+|.+ .||+++++..+ +.+..... ....+...|.+...++.
T Consensus 208 --~~~~~------------g~divv~S~SK~l~g~g~~~gG~iv~~~~li-~~l~~~~~~~~~~~g~~~~~~~A~l~~~~ 272 (418)
T PLN02242 208 --SPARL------------GADVVVHSISKFISGGADIIAGAVCGPAELV-NSMMDLHHGALMLLGPTMNPKVAFELSER 272 (418)
T ss_pred --CHHHc------------CCcEEEEeCccccCCCCCceEEEEEcCHHHH-HHHHHHhhhhhhccCCCCCHHHHHHHHcC
Confidence 11111 4568899999999888887 58988865544 33433321 22233445555555544
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
.. . +..+.+++.++++.+.+.|++++++|..
T Consensus 273 l~-t----l~~r~~~~~~~a~~la~~L~~~~~~V~y 303 (418)
T PLN02242 273 LP-H----LSLRMKEHCRRAMEYAKRMKELGLKVIY 303 (418)
T ss_pred CC-c----HHHHHHHHHHHHHHHHHHHHhCCCEEEC
Confidence 32 2 4456678889999999999998877763
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=213.59 Aligned_cols=295 Identities=15% Similarity=0.223 Sum_probs=200.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~ 154 (469)
+.+|+.+ ...+|++++|++++ . +..++++|+++|+..++ .++++||.|+++.|.|+.... .+..
T Consensus 46 y~r~~~p-t~~~le~~la~l~g--------~--~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 113 (366)
T PRK08247 46 YSRTGNP-TRGVLEQAIADLEG--------G--DQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKK 113 (366)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC--------C--CcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhc
Confidence 4566655 46899999999986 2 23477888899999876 577899999999999987533 3344
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |++++.++.. |++.+++++++ ++++|++++|+||+|. ..++++|+++|+++|+++|+|++|.
T Consensus 114 ~-G~~v~~vd~~-------d~~~l~~~i~~------~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 114 W-NVRFVYVNTA-------SLKAIEQAITP------NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred c-CceEEEECCC-------CHHHHHHhccc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCc
Confidence 5 9999888742 77889888865 7899999999999764 5678889999999999999999996
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC-CcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL-PGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~-~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~ 311 (469)
...+. . + + ..+..++++|+||.++- ++++.|++++++..+.+.+...+.. ..++++.+++
T Consensus 177 ~~~~~-~---p---~----------~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l 239 (366)
T PRK08247 177 TPVLQ-R---P---L----------EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWL 239 (366)
T ss_pred ccccc-C---c---h----------hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHH
Confidence 33221 1 1 1 12466899999999963 3579999998655555544433322 2356677777
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-e-ecCCceEEEEEecccccccCChhHHHH---HHHHHHH
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-C-LKSNAGLFCWVDMRHLLRSNTFEAEME---LWKKIVY 385 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v-~~~~~g~~~~v~~~~~~~~~~~~~~~~---l~~~ll~ 385 (469)
+.+.++. +..+.++.+++++.+.+.|+++ ++. | .|+.+|+|.| .+........+.+... ++..+..
T Consensus 240 ~~~~l~t-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l~~~~~~~slg~ 311 (366)
T PRK08247 240 LIRGMKT-------LALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSLKLITFAESLGG 311 (366)
T ss_pred HHhccCc-------HHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcCCcceEccCCCC
Confidence 7666653 3344556688889999999987 665 4 4447888876 5642100000000000 1111112
Q ss_pred hCCeEEeCCCCCCCC-----------CCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 386 DVKLNISPGSSCHCT-----------EPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 386 ~~GI~v~pg~~f~~~-----------~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
...+.+.|++.++.. .++.+|++++. |+.+.+++.|+++++.
T Consensus 312 ~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 312 VESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQ 364 (366)
T ss_pred CceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 335666787654321 24689999995 6678888888888764
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=215.85 Aligned_cols=345 Identities=15% Similarity=0.099 Sum_probs=214.0
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ .+.+. ++.+.+++.+.. .....|+...+..++...+++.+.+.++ ...
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 96 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQL-------------AKLTHFSLGFFYNEPAVELAELLLALTP----EGL 96 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHH-------------HhCcCccCcccCCHHHHHHHHHHHHhCC----CCC
Confidence 34568999876 44453 455666655531 2223444332345555666666655443 357
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCC------------CEEEEeeccCC----CCccc
Q 043923 112 SKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTG------------VEIVPIQCTSL----NGFQI 173 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~----~~~~~ 173 (469)
+.+++++|+++|+..++..+. .+++.|++.+|+|++.........+ .+++.+|.+.. ..+..
T Consensus 97 ~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (413)
T cd00610 97 DKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELAD 176 (413)
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHH
Confidence 899999999999999998873 5789999999999886544332212 23556665421 12445
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhh
Q 043923 174 TETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251 (469)
Q Consensus 174 d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~ 251 (469)
|++.+++.+++. ..++++ ++++| +|++|.++ +.+.+++|.++|++||+++|+||+|.++...+.. ...+...
T Consensus 177 d~~~l~~~l~~~---~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~--~~~~~~~ 250 (413)
T cd00610 177 DLEALEEALEEH---PEEVAA-VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKM--FAFEHFG 250 (413)
T ss_pred HHHHHHHHHhcC---CCCEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcch--hhHhhcC
Confidence 788888887641 124554 45556 56779876 6777999999999999999999999864222221 1111111
Q ss_pred ccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHH--HHhc--ccccCcHHHHHHHHHHhcCchhhHHHHH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAA--TKMS--SFGLVSSQTQYLLSALLSDKKFTQNYIS 327 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~--~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 327 (469)
.... +.|+||+++ .|+|+||++++ +.+.+.+ .... ..+..+++.+.++.+.|+... + .
T Consensus 251 --------~~~d---~~t~sK~l~-~g~~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~---~--~ 312 (413)
T cd00610 251 --------VEPD---IVTLGKGLG-GGLPLGAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLE---E--E 312 (413)
T ss_pred --------CCCC---eEEEccccc-CccccEEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH---h--c
Confidence 1122 348999998 68999999985 4454443 2222 122356677777666653211 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEeccccccc--CChhHHHHHHHHHHHhCCeEEeCCCCCCCCC
Q 043923 328 ENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTE 401 (469)
Q Consensus 328 ~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~--~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~ 401 (469)
...+++.++.+++.+.|+++ ++.......|.++|+.++..... ........+++.++ ++||.+.|+.
T Consensus 313 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~------ 385 (413)
T cd00610 313 GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSG------ 385 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecC------
Confidence 33445555556666666554 22222234568888888642100 00122335566555 6699999874
Q ss_pred CCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 402 PGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 402 ~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
.+++|++++. .+++++++++++|.+++
T Consensus 386 ~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 386 GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 4679999876 48999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=212.93 Aligned_cols=295 Identities=14% Similarity=0.153 Sum_probs=203.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEEccCCCcChHHH---HhhhCCCEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA---EPGEAFLLPTPYYPGFDRD---LKWRTGVEIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~---~~gd~Vl~~~P~y~~~~~~---~~~~~g~~~~ 161 (469)
..++|+.++++++ +++++|++|+|+++++..++.++. .+||.|++....|+.+... ++.. |++++
T Consensus 44 ~~~~r~~la~~~g--------~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~-G~~v~ 114 (379)
T TIGR03402 44 VEEAREQVAKLLG--------AEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQ-GYKVT 114 (379)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHc-CCEEE
Confidence 4566777777775 568899999999999999888763 4568899988888766433 3344 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.+|.+. ++.+|++++++++++ +++++++++++||||.+++.+ +|.++|+++|+++++|++++ ++..
T Consensus 115 ~v~~~~--~g~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~~~---~I~~l~~~~g~~vivD~~~~---~g~~ 180 (379)
T TIGR03402 115 YLPVDE--EGRLDLEELRAAITD------DTALVSVMWANNETGTIFPIE---EIGEIAKERGALFHTDAVQA---VGKI 180 (379)
T ss_pred EEccCC--CCcCCHHHHHHhcCC------CcEEEEEEcccCCeeecccHH---HHHHHHHHcCCEEEEECccc---cccc
Confidence 999863 346899999998864 789999999999999999965 58888999999999999997 3322
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH-HH-----HHhcccccCcHHHHHHHHHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA-AA-----TKMSSFGLVSSQTQYLLSAL 315 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~-~~-----~~~~~~~~~s~~~q~~~~~~ 315 (469)
+ ..+. ..+..+++.|.+|.+|.+| +|+++..+..... .. ......++.+.+...++.++
T Consensus 181 ~-~~~~------------~~~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~a 245 (379)
T TIGR03402 181 P-IDLK------------EMNIDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKA 245 (379)
T ss_pred c-cCcc------------cCCCCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHH
Confidence 1 2221 1244577778899776555 7787765432100 00 00011233444444444444
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-c-CCceecCC-----ceEEEEEecccccccCChhHHHHHHHHHHHhCC
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEK-A-GISCLKSN-----AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVK 388 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-g~~v~~~~-----~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~G 388 (469)
++- ..++++...+++++.++++.+.|.+ + ++.+..+. +...+|+.... ..++.. .|+++|
T Consensus 246 l~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~l~~~g 312 (379)
T TIGR03402 246 AEL---ATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE---------GEAILL-LLDMEG 312 (379)
T ss_pred HHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC---------HHHHHH-hhccCC
Confidence 432 2345666677888888889988875 4 66665432 22334443221 123444 456789
Q ss_pred eEEeCCCCCCCCC-----------------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 389 LNISPGSSCHCTE-----------------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 389 I~v~pg~~f~~~~-----------------~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
|.+++|..|.... .+.+|+|++. .+++|++++++.|++++++.++
T Consensus 313 I~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 313 ICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred EEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999998775431 3689999987 4999999999999999887654
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=211.28 Aligned_cols=344 Identities=14% Similarity=0.130 Sum_probs=210.4
Q ss_pred CCeeeeeccccccChHHHHHHHhcCC-CccccccCCcccccccccCC-CCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNP-DAAGFKRDGQSIFRELALFQ-DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Y~-~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
...|+|+.++|++++. +.+++.... .... .+ .....|. ...-...+.+...+.+.+.++ .+.++|+
T Consensus 25 ~~~~~l~~~~n~~~~~-v~~a~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~e~~~~~~la~~~g----~~~~~i~ 92 (416)
T PRK00011 25 EEHIELIASENFVSPA-VMEAQGSVLTNKYA---EG----YPGKRYYGGCEYVDVVEQLAIDRAKELFG----AEYANVQ 92 (416)
T ss_pred hcCeeeecccCcCCHH-HHHHHhchhhcccc---cC----CCCccccccchHHHHHHHHHHHHHHHHhC----CCceeee
Confidence 3569999999996544 444443321 0000 00 0011121 111223333312223333333 4555676
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH-----HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCC
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD-----LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
+++| ++++..++.+++++||.|+++.|+|..+... +... |++++.++++. .++.+|++++++.+++.
T Consensus 93 ~~sg-t~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~i~~~----- 164 (416)
T PRK00011 93 PHSG-SQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGK-LYNVVSYGVDE-ETGLIDYDEVEKLALEH----- 164 (416)
T ss_pred cCCc-hHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccc-eeeEeecCcCc-ccCCcCHHHHHHHHHhc-----
Confidence 6665 6789999999999999999999999765321 1223 67888888763 34679999999998642
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc-ccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++++|+++++++| ...+ +++|.++|+++|+++|+|++|... .+.+.. ... + . ...++++|
T Consensus 165 ~~k~v~~~~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~-~~~--~----------~-~~di~~~S 225 (416)
T PRK00011 165 KPKLIIAGASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVH-PSP--V----------P-HADVVTTT 225 (416)
T ss_pred CCCEEEECCCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCcc-CCC--C----------C-CCcEEEec
Confidence 6788888766554 4445 666889999999999999998521 121111 110 1 1 23477899
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhcccccC-c--HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLV-S--SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK 346 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~-s--~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 346 (469)
+||++ +|.|.||++++++.+.+.+......+.. + ...+.++..++.. ...+.+++.+++++++++++.+.|++
T Consensus 226 ~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~ 301 (416)
T PRK00011 226 THKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKE--ALEPEFKEYAQQVVKNAKALAEALAE 301 (416)
T ss_pred CCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99976 7889999999765565555544332211 1 1122221112111 11334577788889999999999999
Q ss_pred cCCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC-CCC---CCCCCeEEEEee-----cCCHHH
Q 043923 347 AGISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS-SCH---CTEPGWFRVCFA-----NMSEDT 416 (469)
Q Consensus 347 ~g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~-~f~---~~~~~~iRi~~~-----~~~~e~ 416 (469)
.|+++.+ ...++++|+.+++.. .+..++ .+.|+++||.+..+. .+. +..+..+|++.. .+++++
T Consensus 302 ~g~~~~~~~~~~~~~~i~~~~~~-----~~~~~~-~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~d 375 (416)
T PRK00011 302 RGFRVVSGGTDNHLVLVDLRSKG-----LTGKEA-EAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAE 375 (416)
T ss_pred CCCeeeecCCCCeEEEEeCcccC-----CCHHHH-HHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHH
Confidence 8987754 122488899886321 012234 445567899997432 111 112456999641 247899
Q ss_pred HHHHHHHHHHHHHh
Q 043923 417 LKLSMQRLKAFVDS 430 (469)
Q Consensus 417 i~~~l~~L~~~l~~ 430 (469)
++.+++.|++++..
T Consensus 376 i~~l~~~l~~~~~~ 389 (416)
T PRK00011 376 MKEIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998774
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=212.73 Aligned_cols=295 Identities=17% Similarity=0.190 Sum_probs=202.4
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCC-CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhhhCCCEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTF-DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKWRTGVEI 160 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~-~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~~g~~~ 160 (469)
.+..++++.++++++ . +.++|++|+|+++++..++.+++++||+|++..+.|..+.. .++.. |+++
T Consensus 44 ~~~~~~~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~ 114 (376)
T TIGR01977 44 REVEETRQLLAKLFN--------APSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQI-GVEI 114 (376)
T ss_pred HHHHHHHHHHHHHhC--------cCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHc-CcEE
Confidence 456788999999886 3 34589999999999999999999999999999999887643 23344 9999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+.++.+. ++.+|++++++++++ +++++++++|+||||.+++.++ |.++|+++|+++|+|++++ ++.
T Consensus 115 ~~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~n~tG~~~~~~~---i~~l~~~~~~~livD~a~~---~g~ 180 (376)
T TIGR01977 115 TIVKCDN--EGLISPERIKRAIKT------NTKLIVVSHASNVTGTILPIEE---IGELAQENGIFFILDAAQT---AGV 180 (376)
T ss_pred EEEecCC--CCCcCHHHHHHhcCC------CCeEEEEECCCCCccccCCHHH---HHHHHHHcCCEEEEEhhhc---cCc
Confidence 9998763 456899999998864 7899999999999999999655 7888999999999999997 332
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH----h--------------cccc
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK----M--------------SSFG 302 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~----~--------------~~~~ 302 (469)
.+ ..+. ..+..+++.|++|+++.|. .+|.++..+......... . ...+
T Consensus 181 ~~-~~~~------------~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 246 (376)
T TIGR01977 181 IP-IDMT------------ELAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESG 246 (376)
T ss_pred cC-CCch------------hcCCCEEEecccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCC
Confidence 21 1111 1245677889999986442 467666544421110000 0 0012
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CceEEEEEecccccccCChhHHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLRSNTFEAEM 377 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~----~~g~~~~v~~~~~~~~~~~~~~~ 377 (469)
+.+.+...++.++++... +.-.+..+++.....+++.+.|.+. ++++..+ ..+..+++.+++. +..
T Consensus 247 t~~~~~~~a~~~al~~~~--~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~ 317 (376)
T TIGR01977 247 TLNTPGIAGLNAGIKFIE--KIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSE 317 (376)
T ss_pred CCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHH
Confidence 233333333333332110 1113455667777788888888865 6766543 1245677777532 122
Q ss_pred HHHHHHHHhCCeEEeCCCCCCC--------CCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 043923 378 ELWKKIVYDVKLNISPGSSCHC--------TEPGWFRVCFAN-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 378 ~l~~~ll~~~GI~v~pg~~f~~--------~~~~~iRi~~~~-~~~e~i~~~l~~L~~ 426 (469)
++...|.+++||.+.+|..+.. ...+.+|+++.. .++++++.++++|++
T Consensus 318 ~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 318 EVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 4566666556999999876642 245789999976 499999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=208.32 Aligned_cols=289 Identities=16% Similarity=0.183 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc------CCCCEEEEccCCCcChHHHHhhhCCCEEEE
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA------EPGEAFLLPTPYYPGFDRDLKWRTGVEIVP 162 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~------~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~ 162 (469)
.++++.+|++++ ++++++++++|+++++..++.++. .+||.|++++++|..+...++.. |++++.
T Consensus 62 ~~~~~~la~~~g--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~-G~~~~~ 132 (373)
T TIGR03812 62 EEVVGSLGNLLH--------LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEML-GLELRY 132 (373)
T ss_pred HHHHHHHHHHhC--------CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHc-CCeEEE
Confidence 455566666654 567788999999999988876653 46799999999999988888877 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC--C
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS--S 240 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~--~ 240 (469)
++.+ .++.+|++++++++++ ++..+++..|+||||.+.+.++ |.++|+++|+++|+|++|+.+... .
T Consensus 133 v~~~--~~~~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~~~~---i~~l~~~~~~~livD~a~~~~~~~~~~ 201 (373)
T TIGR03812 133 APLD--EDYTVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDDIEE---LSKIALENGIYLHVDAAFGGFVIPFLK 201 (373)
T ss_pred EeeC--CCCCcCHHHHHHHHhh------CcEEEEEECCCCCCCccCCHHH---HHHHHHHcCCeEEEEcCchhHHHHHHh
Confidence 9986 3567899999999875 4545555568999999988555 788888999999999999754321 0
Q ss_pred --CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc----------ccCcHHH
Q 043923 241 --PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF----------GLVSSQT 308 (469)
Q Consensus 241 --~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~----------~~~s~~~ 308 (469)
..... ..+. ......+..|.+| |++++.++|+++..++.+.+.+.....+ ++.+...
T Consensus 202 ~~~~~~~-~d~~---------~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~ 270 (373)
T TIGR03812 202 KGYNPPP-FDFS---------LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGAS 270 (373)
T ss_pred cCCCCCC-cccc---------CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHH
Confidence 00000 0000 0122234457789 6678889987775455444443322222 1122334
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eecCCceEEEEEecccccccCChhHHHHHHHHHHHhC
Q 043923 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS-CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV 387 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~-v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~ 387 (469)
..++...++... ...+++..+++.+.++++.+.|+++|+. +.++.. .++.+.++.. .++.+.|. ++
T Consensus 271 ~~~~~~~l~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~v~~~~~~~---------~~v~~~L~-~~ 337 (373)
T TIGR03812 271 AAATYAVIKYLG--REGYRKIVAECMENTRYLVEELKKIGFEPVIEPVL-NIVAFEVDDP---------EEVRKKLR-DR 337 (373)
T ss_pred HHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCc-eEEEEEeCCH---------HHHHHHHH-HC
Confidence 444444444321 3345677788889999999999998875 444444 5676776531 14555554 56
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 043923 388 KLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 388 GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~ 426 (469)
||.+.++. .++++|+++.. .+++++++++++|++
T Consensus 338 gi~v~~~~-----~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 338 GWYVSVTR-----CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred CceeccCC-----CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 99998653 25689999976 389999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-23 Score=206.15 Aligned_cols=293 Identities=17% Similarity=0.185 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE----PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
.++++.++++++ .+.+++++++|+++++..++.++.. ++|.|++.++.|..+...++.. |++++.+|
T Consensus 62 ~~~~~~la~~~g--------~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~-g~~~~~v~ 132 (371)
T PRK13520 62 EEAVEMLGELLH--------LPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADML-GVELRRAP 132 (371)
T ss_pred HHHHHHHHHHhC--------CCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHc-CceEEEec
Confidence 345555555553 4566889999999999999877654 5789999999999888888777 99999998
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+. ++.+|++.+++++++ +++.|+++.++||||.+.+ +++|.++|+++|+++++|++|+.+........
T Consensus 133 ~~~--~~~~d~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~ 201 (371)
T PRK13520 133 LDD--DYRVDVKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDDP 201 (371)
T ss_pred CCC--CCcCCHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCC
Confidence 763 456899999999975 6777888889999999998 55588888999999999999986432110000
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc----------ccCcHHHHHHHHH
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF----------GLVSSQTQYLLSA 314 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~----------~~~s~~~q~~~~~ 314 (469)
...... ..+...+..|.+| |+++|.++|+++..++.+.+.+.....+ ++.+.....++.+
T Consensus 202 ~~~~~~---------~~~vd~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~ 271 (371)
T PRK13520 202 PNFDFS---------LPGVDSITIDPHK-MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYA 271 (371)
T ss_pred CCcccc---------CCCCceEEECCcc-ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHH
Confidence 001110 1123344457778 5568899999887666554443321111 1112233444444
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC
Q 043923 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS-CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP 393 (469)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~-v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p 393 (469)
++.... ...+++.+++..+.++++.+.|++.|++ +..+.. .++.++++. ..++...|. ++||.+.+
T Consensus 272 al~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~v~~~~~~---------~~~v~~~L~-~~gi~v~~ 338 (371)
T PRK13520 272 VMKYLG--REGYRKVVERCMENTRWLAEELKERGFEPVIEPVL-NIVAFDDPN---------PDEVREKLR-ERGWRVSV 338 (371)
T ss_pred HHhhhc--HhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCc-eEEEEecCC---------HHHHHHHHH-HCCceecc
Confidence 444321 2234667778888889999999988887 555554 466677652 124555555 56999986
Q ss_pred CCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 394 GSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 394 g~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
+. .++++|+++.. .++++++++++.|+++++
T Consensus 339 ~~-----~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 339 TR-----CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred CC-----CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 53 24689999865 489999999999998765
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-23 Score=207.15 Aligned_cols=298 Identities=14% Similarity=0.119 Sum_probs=201.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
+.+|++.+|++++ .+..++++++++|+..++..+.. +||.|+.....|......+... |.++..++.
T Consensus 92 ~~~le~~la~~~g----------~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~-g~~~~~~~~ 160 (406)
T PRK13393 92 HVLLEAELADLHG----------KEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHS-RAEKRIFRH 160 (406)
T ss_pred HHHHHHHHHHHhC----------CCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHc-CCeEEEeCC
Confidence 5778888888774 23445444555688888887655 7887777777777777777666 888777764
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
. |++.+++.++.. ..+++++|++++++||+|.+.+ +++|.++|+++|+++|+||+|+...++... ..
T Consensus 161 ~-------d~~~l~~~l~~~--~~~~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G-~g 227 (406)
T PRK13393 161 N-------DPADLERKLSDL--DPHRPKLVAFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRG-GG 227 (406)
T ss_pred C-------CHHHHHHHHHhc--cCCCCEEEEEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCC-Cc
Confidence 2 667777776532 1125788899999999999999 555888899999999999999843344221 12
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-cc---ccCcHHHHHHHHHHhcCchh
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~ 321 (469)
+..... . ..+.+++++||||+||++| ||+++++ .+.+.+.... .+ ...+++.+.++.+.|+...
T Consensus 228 ~~~~~~-~------~~~~~i~~~tlsKa~g~~G---G~~~~~~-~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~- 295 (406)
T PRK13393 228 IAEREG-L------ADRLTIIEGTLAKAFGVMG---GYITGSA-ALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLK- 295 (406)
T ss_pred hhhhcC-C------CCCCeEEEEeCchhhcccC---ceeeCCH-HHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHh-
Confidence 221111 0 1234677899999999888 9998854 4545444432 21 1234555666666664321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-C
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC-T 400 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~ 400 (469)
+. ...+.++.++++++.+.|++.|+++.++.+. ++.+.++.. ....++...|++++||.+.++..... .
T Consensus 296 --~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-i~~v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~ 365 (406)
T PRK13393 296 --AS-SAERERHQDRVARLRARLDKAGIPHLPNPSH-IVPVMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPR 365 (406)
T ss_pred --hC-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-eEEEEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCC
Confidence 11 1234566778889999999888877766664 555554321 12345677777667999998754332 2
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 401 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 401 ~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.+++|++++. .+++++++++++|++++++.
T Consensus 366 g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 366 GTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred CCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 34689999976 49999999999999998764
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-23 Score=206.41 Aligned_cols=290 Identities=14% Similarity=0.181 Sum_probs=191.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----Hhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~ 154 (469)
..+|+. .+..+|++++|++++ .+.+++++|+++|+..++.+++++||.|+++.|.|..+... +..
T Consensus 58 Y~r~~~-p~~~~Le~~iA~~~g----------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 126 (400)
T PRK06234 58 YSRLGN-PTSTEVENKLALLEG----------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTR 126 (400)
T ss_pred ccCCCC-ccHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhh
Confidence 344544 468999999999986 24678889999999999999999999999999999876543 344
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEecc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK--NIHLISDEI 232 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Dea 232 (469)
. |++++.++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++ |+++|+|++
T Consensus 127 ~-G~~v~~vd~~-------d~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea 189 (400)
T PRK06234 127 Y-GVEVTFVDTS-------NLEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNT 189 (400)
T ss_pred C-CeEEEEECCC-------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECC
Confidence 5 9999888753 67889988865 7899999999999999998 55577788886 999999999
Q ss_pred ccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHh--cc-c-ccCcHH
Q 043923 233 YSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKM--SS-F-GLVSSQ 307 (469)
Q Consensus 233 y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~--~~-~-~~~s~~ 307 (469)
|+..++. . . .. .+..+++.|+||.++.+|.++ ||++++++ +.+.++.. .. . ..+++.
T Consensus 190 ~~~~~~~-~---~-l~------------~g~Divv~S~sK~l~g~g~~~gG~v~~~~~-~~~~l~~~~~~~~~g~~l~p~ 251 (400)
T PRK06234 190 FCTPYIQ-R---P-LQ------------LGADVVVHSATKYLNGHGDVIAGFVVGKEE-FINQVKLFGIKDMTGSVIGPF 251 (400)
T ss_pred CCchhcC-C---c-hh------------hCCcEEEeeccccccCCCCceeEEEEecHH-HHHHHHHHHHHHhcCCCCCHH
Confidence 9864332 1 1 11 145688999999998889775 99998654 43333321 21 1 224555
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-ee-cC---------------CceEEEEEecccccc
Q 043923 308 TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-IS-CL-KS---------------NAGLFCWVDMRHLLR 369 (469)
Q Consensus 308 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~-v~-~~---------------~~g~~~~v~~~~~~~ 369 (469)
..+.+..-|+. +..+.++..++...+.+.|+++. +. |. |. ..|-.+.+.+++..
T Consensus 252 ~a~l~~~~l~t-------l~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~- 323 (400)
T PRK06234 252 EAFLIIRGMKT-------LQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGV- 323 (400)
T ss_pred HHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcH-
Confidence 55555555443 23344455567777888887652 21 11 11 12335567775321
Q ss_pred cCChhHHHHHHHHHHHhCCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 370 SNTFEAEMELWKKIVYDVKLNISPGSSCHC---------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 370 ~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~---------------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
.....++.. |+-.++.+.-|..... -.++.+|+|++. |+.+.+++.|++++
T Consensus 324 ----~~~~~f~~~-l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al 395 (400)
T PRK06234 324 ----EEGKVVMNN-VKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL---EDVDDIIADLKQAL 395 (400)
T ss_pred ----HHHHHHHHh-CCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHH
Confidence 112233333 3333444433322210 114689999995 55667777777776
Q ss_pred Hh
Q 043923 429 DS 430 (469)
Q Consensus 429 ~~ 430 (469)
+.
T Consensus 396 ~~ 397 (400)
T PRK06234 396 DL 397 (400)
T ss_pred HH
Confidence 64
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=211.50 Aligned_cols=328 Identities=16% Similarity=0.194 Sum_probs=214.9
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCC--CcHHHHHHHHHH---HHhHcCCCCCCCCC
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYH--GLPAFKKALVEF---MSEIRGNKVTFDTS 112 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~--g~~~Lr~aia~~---l~~~~~~~~~~~~~ 112 (469)
+++.|+.+..+.. +..+.++.... .....|.+.. -...++++++++ +.+.+| ++++
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~~~--------------~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g----~~~~ 130 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIISRS--------------EFYTAYTPYQPEISQGTLQAIFEYQTMICELTG----MDVA 130 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHhch--------------hHHHhcCCCCCccchHHHHHHHHHHHHHHHHhC----CCcc
Confidence 5678888776654 33444444321 1223354411 124456555533 355555 5677
Q ss_pred cEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCCcChHHHHhh---hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc
Q 043923 113 KIVLTAGATSANETLMFCLA-EPGEAFLLPTPYYPGFDRDLKW---RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR 188 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~---~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 188 (469)
++++++|+++++..++.++. .+||.|+++.|.|+.+...+.. ..|++++.+|.++ + .+|++++++++++
T Consensus 131 ~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~--~-~~d~~~l~~~i~~---- 203 (447)
T PRK00451 131 NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED--G-VTDLEALEAAVDD---- 203 (447)
T ss_pred eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC--C-CCCHHHHHHhcCC----
Confidence 89999999999999988874 7899999999999988876553 1389999999874 3 6899999998864
Q ss_pred CCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEE--eccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 189 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLIS--DEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 189 ~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~--Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++++|++++| ||||.+.+ +++|.++|+++|+++++ |....+. + . ... ..+.+++
T Consensus 204 --~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~-~---~--~~~------------~~~~D~~ 259 (447)
T PRK00451 204 --DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGL-L---K--PPG------------EYGADIV 259 (447)
T ss_pred --CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhcc-C---C--Ccc------------cCCCCEE
Confidence 7899999999 89999977 55688899999999988 4332211 1 0 000 1234444
Q ss_pred Ec---cCccccCCCcceEEEEEecCHHHHHH---------------------------HHHhcccccC--cHHHH-HHHH
Q 043923 267 VY---SLSKDLGLPGFRVGAIYSNDDMVVAA---------------------------ATKMSSFGLV--SSQTQ-YLLS 313 (469)
Q Consensus 267 i~---S~SK~~g~~GlRiG~li~~~~~~~~~---------------------------~~~~~~~~~~--s~~~q-~~~~ 313 (469)
+. +|||.+++.|+++||++++++.+... .+........ +...+ .++.
T Consensus 260 ~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa 339 (447)
T PRK00451 260 VGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAA 339 (447)
T ss_pred EECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHH
Confidence 44 78888888999999998865544331 0111111111 11222 2222
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEE--EecccccccCChhHHHHHHHHHHHhCCeE
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCW--VDMRHLLRSNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~--v~~~~~~~~~~~~~~~~l~~~ll~~~GI~ 390 (469)
..+... ....+++.++++.++++++.+.|+++ |+++. .+++|.+ ++++. +..+++++|+++ ||.
T Consensus 340 ~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~--------~~~~~~~~L~~~-gi~ 406 (447)
T PRK00451 340 IYMSLL--GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK--------PAEEVNEALLEK-GIL 406 (447)
T ss_pred HHHHHH--CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC--------CHHHHHHHHHhc-CCC
Confidence 222211 13446788899999999999999988 67765 3345543 45431 123677777654 665
Q ss_pred -EeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 391 -ISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 391 -v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
..++..|++...+++|++++. .++++++++++.|++++
T Consensus 407 ~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 407 GGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 345665654445789999975 49999999999998764
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=207.79 Aligned_cols=275 Identities=16% Similarity=0.166 Sum_probs=185.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCCcChHHHHhhhCC------------CEEEEeeccCCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGFDRDLKWRTG------------VEIVPIQCTSLNG 170 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~ 170 (469)
.+.+++++++++|+..++.... ...+.|+..+-.|++....+....| ..++.+|.
T Consensus 97 ~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 171 (403)
T PRK05093 97 AERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF----- 171 (403)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-----
Confidence 4689999999999999998652 1235677777777665322211101 12222222
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC--CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 171 FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM--SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 171 ~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~--s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
.|++.+++.+.+ ++++|+++ |.||+|-++ +.+.+++|.++|++||+++|+||+|.++.+.+.. .+...
T Consensus 172 --~d~~~l~~~l~~------~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~~~~~ 241 (403)
T PRK05093 172 --NDLAAVKAVIDD------HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDL-FAYMH 241 (403)
T ss_pred --CCHHHHHHHhcC------CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc-hhhhh
Confidence 167888887753 67776666 888887765 8999999999999999999999999986554432 11111
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-hc-ccccCcHHHHHHHHHHhcCchhhHHHH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-MS-SFGLVSSQTQYLLSALLSDKKFTQNYI 326 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~ 326 (469)
. . . .++ +.||||+++ +|+|+||++++++ +.+.+.. .. .....+++.|.++.+.|+... .
T Consensus 242 ~-~-~------~pd----i~s~sK~l~-~G~rig~vv~~~~-i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~-----~ 302 (403)
T PRK05093 242 Y-G-V------TPD----ILTSAKALG-GGFPIGAMLTTAE-IASHFKVGTHGSTYGGNPLACAVAEAVFDIIN-----T 302 (403)
T ss_pred c-C-C------CCC----EEEeccccc-CCcceEEEEEcHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-----h
Confidence 1 1 0 112 458999999 9999999999654 4444432 12 122367888888888664321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 327 SENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
....+.++++++++.+.|++++ +....+..|+++|+.++... .....+++..+++ +||.+.|+ +.
T Consensus 303 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~----~~~~~~~~~~l~~-~Gv~v~~~------g~ 371 (403)
T PRK05093 303 PEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQY----KGRARDFLNAAAE-EGVMVLVA------GP 371 (403)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcc----hhHHHHHHHHHHH-CCeEEecC------CC
Confidence 2345677778888888888763 22234456799999986421 0234467777765 59999874 24
Q ss_pred CeEEEEeecC-CHHHHHHHHHHHHHHHHh
Q 043923 403 GWFRVCFANM-SEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 403 ~~iRi~~~~~-~~e~i~~~l~~L~~~l~~ 430 (469)
+++|++++.. +++++++++++|++++++
T Consensus 372 ~~lRl~~~~~~~~~~i~~~~~~l~~~l~~ 400 (403)
T PRK05093 372 DVLRFAPSLVIEEADIDEGLARFEKAVAK 400 (403)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6899987764 999999999999999864
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=202.47 Aligned_cols=218 Identities=18% Similarity=0.188 Sum_probs=159.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhh---h
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKW---R 155 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~---~ 155 (469)
+.+|+.+ ...+|++++|++.+ .+++++++|+++|+..++.+++++||.|+++.|+|......+.. .
T Consensus 45 Y~R~~~p-~~~~le~~lA~l~g----------~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~ 113 (382)
T TIGR02080 45 YSRSGNP-TRDLLQQALAELEG----------GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK 113 (382)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 5667655 45899999999874 46799999999999999999999999999999999875544332 1
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
.|+++..++. .|++.+++++++ ++++|++++|+||||.+++.+ +|.++|+++|+++|+|++|..
T Consensus 114 ~~~~v~~~d~-------~d~~~l~~ai~~------~tklV~l~~p~NPtG~~~dl~---~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 114 GCFRVLFVDQ-------GDEQALRAALAQ------KPKLVLIETPSNPLLRVVDIA---KICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred cCeEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCEecCHH---HHHHHHHHcCCEEEEECCCcc
Confidence 1455554431 367888888865 789999999999999999855 578888899999999999975
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHH
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLL 312 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~ 312 (469)
..+. . + ..+ +..++++|+||.++ .++++.|++++.++.+.+.+...+.. ..++++..+.+
T Consensus 178 ~~~~-~---p-l~~------------gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~ 240 (382)
T TIGR02080 178 PALQ-N---P-LAL------------GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLT 240 (382)
T ss_pred cccC-C---c-hhh------------CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHH
Confidence 4221 1 1 111 23478899999985 57899999988666665555444333 23566666555
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
.+-++. +..+.++..++...+.+.|+.+
T Consensus 241 lr~l~t-------l~~R~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 241 LRGLRT-------LVARMRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred Hcccch-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 443332 3444566677888888899876
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=201.83 Aligned_cols=332 Identities=13% Similarity=0.110 Sum_probs=209.9
Q ss_pred CCCCCeeeeecccc--cc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLAEN--QL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..|.. .+ .++.+.+++.+..+ .....+ .....+++.++++++.+..+
T Consensus 26 ~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~-------------~~~~~~-~~~~~~~~~~la~~l~~~~~------ 85 (377)
T PRK02936 26 NNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLD-------------DIWHVS-NLFTNSLQEEVASLLAENSA------ 85 (377)
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-------------hccccc-cccCCHHHHHHHHHHHhcCC------
Confidence 33456899877742 23 34556666555311 111111 22447899999999975422
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-CCC-CEEEEccCCCcChHHH-HhhhCCCEEE---EeeccCCCCcc--cCHHHHHHHH
Q 043923 111 TSKIVLTAGATSANETLMFCLA-EPG-EAFLLPTPYYPGFDRD-LKWRTGVEIV---PIQCTSLNGFQ--ITETAIEEAY 182 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~-~~g-d~Vl~~~P~y~~~~~~-~~~~~g~~~~---~v~~~~~~~~~--~d~~~l~~~i 182 (469)
.+.+++++++++|+..++.... .+| +.|++.++.|++.... .... +.... ..|...+..+. .|++.+++.+
T Consensus 86 ~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 164 (377)
T PRK02936 86 GDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSAT-GQEKIKEGFGPLLPGFTHVPFNDIKALKEVM 164 (377)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhcc-CCccccccCCCCCCCceEeCCCCHHHHHHhc
Confidence 3689999999999999998642 233 6799999988754322 2222 32111 01111000000 1678888877
Q ss_pred HHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcC
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 261 (469)
.+ ++++|++..+++++|.. .+.+.+++|.++|++||+++|+||+|.++.+.+.. .+.... . ..
T Consensus 165 ~~------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~-~~~~~~-~--------~~ 228 (377)
T PRK02936 165 NE------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL-FAYEQF-G--------LD 228 (377)
T ss_pred cC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh-hHHHhh-C--------CC
Confidence 53 78888888888999876 58899999999999999999999999875443332 111111 1 11
Q ss_pred CeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHH
Q 043923 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRK 339 (469)
Q Consensus 262 ~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 339 (469)
+.+ .++||+++ +|+|+||+++++ .+.+.+.... .....+++.|.++.++|+.... +...+++.++.++
T Consensus 229 ~di---~t~sK~l~-~G~~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~ 298 (377)
T PRK02936 229 PDI---VTVAKGLG-NGIPVGAMIGKK-ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-----PSFLEEVQEKGEY 298 (377)
T ss_pred CcE---EEEccccc-CCCccEEEEEcH-HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHH
Confidence 222 37999999 999999999954 4544443221 1223678889988888865321 1233445555566
Q ss_pred HHHHHHhc--CCcee--cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCH
Q 043923 340 LVSGLEKA--GISCL--KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSE 414 (469)
Q Consensus 340 l~~~L~~~--g~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~ 414 (469)
+.+.|++. ++... ....|+++|++++.. ...+.. .+.++||.+.|+. .+++|+++.. +++
T Consensus 299 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~--------~~~~~~-~l~~~gv~v~~~g------~~~lRi~p~~~~~~ 363 (377)
T PRK02936 299 FLQKLQEELEHLECVKNIRGKGLMIGIECTEE--------VAPVIE-QLREEGLLVLSAG------PNVIRLLPPLVVTK 363 (377)
T ss_pred HHHHHHHHHhhCCcEEeEeecceEEEEEecch--------HHHHHH-HHHHCCeEEecCC------CCEEEEECCcccCH
Confidence 66666552 22221 123468999998742 223444 4567799998752 4689999743 599
Q ss_pred HHHHHHHHHHHHHH
Q 043923 415 DTLKLSMQRLKAFV 428 (469)
Q Consensus 415 e~i~~~l~~L~~~l 428 (469)
+++++++++|++++
T Consensus 364 ~~i~~~i~~l~~~~ 377 (377)
T PRK02936 364 EELDQAVYLLKKVL 377 (377)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998764
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=200.61 Aligned_cols=291 Identities=13% Similarity=0.158 Sum_probs=192.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhh---
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWR--- 155 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~--- 155 (469)
+.+|+.+. ..+|++.+|++++ ..+.+++ ++++.|+..++.+++++||.|+++.|.|......+...
T Consensus 55 y~r~~~pt-~~~Le~~lA~l~G---------~~~al~~-~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~ 123 (386)
T PRK06767 55 YSRLGNPT-VKLFEERMAVLEG---------GEEALAF-GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK 123 (386)
T ss_pred ccCCCCcc-hHHHHHHHHHHhC---------CCcEEEE-CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh
Confidence 45566553 5899999999986 2344444 55567999999999999999999999888765544322
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
.|+++..++. .|++++++++++ ++++|++++|+||||.+++. ++|.++|+++|+++|+|++|+.
T Consensus 124 ~gi~~~~~~~-------~d~~~l~~~i~~------~tklV~lesp~NptG~v~dl---~~I~~la~~~g~~vivD~a~a~ 187 (386)
T PRK06767 124 FMITHSFCDM-------ETEADIENKIRP------NTKLIFVETPINPTMKLIDL---KQVIRVAKRNGLLVIVDNTFCS 187 (386)
T ss_pred cCeEEEEeCC-------CCHHHHHHhhCc------CceEEEEeCCCCCCceecCH---HHHHHHHHHcCCEEEEECCCcc
Confidence 2555544432 267888888764 78999999999999999985 5578888899999999999974
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhcc-cc-cCcHHHHHHH
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSS-FG-LVSSQTQYLL 312 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~-~~-~~s~~~q~~~ 312 (469)
..+. . + + ..+..+++.|+||.++.+|.++ ||+++++..+.+....... .+ .++++.++++
T Consensus 188 ~~~~-~---p---l----------~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~ 250 (386)
T PRK06767 188 PYLQ-R---P---L----------ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLL 250 (386)
T ss_pred cccC-C---c---h----------hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3221 1 1 1 1134577889999998889886 8999876655554333322 22 2455555544
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecC----------CceEEEEEecccccccCChhHHHHHH
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKS----------NAGLFCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~----------~~g~~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
...|+. +..+.++.+++.+.+.+.|+++ +++ +..| ..|-.+.+.+++. ..+...++
T Consensus 251 ~~~L~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~-----~~~~~~f~ 318 (386)
T PRK06767 251 LRGLKT-------LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGG-----KEETQAFI 318 (386)
T ss_pred HcCCCc-------HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCC-----HHHHHHHH
Confidence 444432 3445566788888899999987 665 3311 1233555666521 12233444
Q ss_pred HHHHHhCCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 381 KKIVYDVKLNISPGSSCHC---------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~---------------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
..+ +..++.+.-|..... -.++.+|+|++. |+.+.+++-|.++++
T Consensus 319 ~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~ 384 (386)
T PRK06767 319 NDL-HFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALK 384 (386)
T ss_pred HhC-CccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 443 556666665532211 014689999995 567777888887775
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=200.27 Aligned_cols=285 Identities=13% Similarity=0.170 Sum_probs=189.5
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC---------------EEEEccCCCcCh---
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGE---------------AFLLPTPYYPGF--- 148 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd---------------~Vl~~~P~y~~~--- 148 (469)
+.+++++++++++.+.+| .+++++++|+++|+.+++.+++++|| .|+++.|.|..|
T Consensus 42 ~~~~~~~~~~~~~a~~~g------~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~ 115 (363)
T TIGR01437 42 EIKELVNKTGEYIANLLG------VEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAP 115 (363)
T ss_pred CHHHHHHHHHHHHHHhhC------CCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCc
Confidence 357888888888877655 45789999999999999999999998 999999888766
Q ss_pred -HHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE-EecCCCCCCCCCCHHHHHHHHHHHHhcCeE
Q 043923 149 -DRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL-VTNPSNPLGTTMSRNELNLLVNIITEKNIH 226 (469)
Q Consensus 149 -~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv-l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~ 226 (469)
...+... |++++.++.+ +.+|++++++++++ ++++++ +++|+||+|.+.+.++ |+++|++||++
T Consensus 116 ~~~~~~~~-g~~~v~v~~~----~~~d~~~le~ai~~------~t~ai~~v~~~~~~~g~~~~~~~---i~~~a~~~gi~ 181 (363)
T TIGR01437 116 VETMVRLG-GGKVVEAGYA----NECSAEQLEAAITE------KTAAILYIKSHHCVQKSMLSVED---AAQVAQEHNLP 181 (363)
T ss_pred hHHHHHhc-CCeEEEEcCC----CCCCHHHHHHhcCh------hceEEEEEecCCCCcCCcCCHHH---HHHHHHHcCCe
Confidence 3445555 9999988763 35899999999976 777665 6788999999999655 89999999999
Q ss_pred EEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc------
Q 043923 227 LISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS------ 300 (469)
Q Consensus 227 iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~------ 300 (469)
+|+|++|+. +. .+...+ +..+++.|++|.+ +|++.|+++++++.+.. ......
T Consensus 182 vivD~a~~~---~~---~~~~~~------------g~D~~~~S~~K~l--~gp~~G~l~~~~~~i~~-~~~~~~~~~~~~ 240 (363)
T TIGR01437 182 LIVDAAAEE---DL---QKYYRL------------GADLVIYSGAKAI--EGPTSGLVLGKKKYIEW-VKLQSKGIGRAM 240 (363)
T ss_pred EEEECCCCC---ch---HHHHHc------------CCCEEEEeCCccc--CCCceEEEEEcHHHHHH-HHhccCCCccee
Confidence 999999971 11 111111 3456778999976 67789999985554433 222111
Q ss_pred -cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC--ceE-----EEEEecccccccC
Q 043923 301 -FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN--AGL-----FCWVDMRHLLRSN 371 (469)
Q Consensus 301 -~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~--~g~-----~~~v~~~~~~~~~ 371 (469)
.+..+..++.++...+.+. ..+..+.+.++++.+.+.|.++ |+++..+. .+. -+.++... .
T Consensus 241 ~~~~~~~~gl~aAl~~~~~~------~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~----~ 310 (363)
T TIGR01437 241 KVGKENILGLTAALEQYLST------GKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESE----L 310 (363)
T ss_pred ccCHHHHHHHHHHHHHHHcc------CcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC----C
Confidence 1111222333333333221 1122333444567788999887 78766321 111 12222211 0
Q ss_pred ChhHHHHHHHHHHHhCC--eEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 372 TFEAEMELWKKIVYDVK--LNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 372 ~~~~~~~l~~~ll~~~G--I~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
. .+..++.+.| +++| |.+++ .|. ..+.+|+++...+++|++.++++|++++
T Consensus 311 g-~~~~~l~~~L-~~~~~~I~~r~--~~~--~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 311 G-MTAADVVQAL-RQGEPAIYTRG--YKA--NEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred C-CCHHHHHHHH-hcCCCCEEEee--eee--cCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 0 1123455554 5556 66654 232 4668999998779999999999998764
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-22 Score=198.43 Aligned_cols=315 Identities=12% Similarity=0.130 Sum_probs=201.9
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEE
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIV 161 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~ 161 (469)
|+...++.+|++++|++++ ..+.+++++|.++.+ .++.+++++||.|+++++.|.++...+... +.+++
T Consensus 39 yg~~~~~~~LE~~lA~~~g---------~e~al~~~sG~~a~~-~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~-~~~~~ 107 (392)
T PLN03227 39 YGTIDAHLELEQCMAEFLG---------TESAILYSDGASTTS-STVAAFAKRGDLLVVDRGVNEALLVGVSLS-RANVR 107 (392)
T ss_pred cCChHHHHHHHHHHHHHhC---------CCcEEEecCcHHHHH-HHHHHhCCCCCEEEEeccccHHHHHHHHHc-CCeEE
Confidence 7767788999999999996 346788888877766 666778999999999999999988877655 78877
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHh--------cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQK--------RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~--------~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay 233 (469)
.++.+ |++.++..++.... ..+++++|++.+|.||+|.+.+ ++++.++|++||+++|+||+|
T Consensus 108 ~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~ 177 (392)
T PLN03227 108 WFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESF 177 (392)
T ss_pred EeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcc
Confidence 77654 34444544433211 1236788899999999999999 556899999999999999999
Q ss_pred cccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc---cccc-CcHHHH
Q 043923 234 SGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---SFGL-VSSQTQ 309 (469)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~---~~~~-~s~~~q 309 (469)
.-..++ .......+... . ....+..+++.|+||.+|.. .|++++++ .+.+.+.... .++. .+++.+
T Consensus 178 ~~g~~g-~~G~g~~~~~g-~----~p~~~~Div~~slsk~~g~~---gg~v~~~~-~~~~~~~~~~~~~~~~~~~~p~~~ 247 (392)
T PLN03227 178 SFGTLG-KSGRGSLEHAG-L----KPMVHAEIVTFSLENAFGSV---GGMTVGSE-EVVDHQRLSGSGYCFSASAPPFLA 247 (392)
T ss_pred cccccC-CCCCcHHHHcC-C----CCCCCceEEEeechhhhhcc---CcEEecCH-HHHHHHHHhCcCccccCCCCHHHH
Confidence 722222 21112222211 0 00124578889999987744 48888754 4443333221 2332 234455
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee----------cCCceEEEEEecccccccCChh---HH
Q 043923 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL----------KSNAGLFCWVDMRHLLRSNTFE---AE 376 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~----------~~~~g~~~~v~~~~~~~~~~~~---~~ 376 (469)
.++...+.... . .+..+++++++.+++.+.|++.+++.. ....|+++.+.+.+........ ..
T Consensus 248 ~aa~~al~~~~--~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 323 (392)
T PLN03227 248 KADATATAGEL--A--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLIL 323 (392)
T ss_pred HHHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHH
Confidence 55544443211 1 234566778888888888876543311 1123456777775321111000 11
Q ss_pred HHHHHHHHHhCCeEEeCCCC-----CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 377 MELWKKIVYDVKLNISPGSS-----CHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~-----f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.++++.++ ++||.+.+... +....+..+|++++. ++++++++++++|++++++..
T Consensus 324 ~~~~~~~~-~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 324 DQIAHHSL-SEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred HHHHHHHH-HCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 24555554 66999875221 112235679999977 699999999999999987653
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=199.89 Aligned_cols=212 Identities=19% Similarity=0.173 Sum_probs=147.8
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCc----ChHHHHhhhCCCEEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP----GFDRDLKWRTGVEIV 161 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~----~~~~~~~~~~g~~~~ 161 (469)
....+|++++|++++ . ...+++ +++++|+..++.+++++||.|+++.|.|. .+...++.. |+++.
T Consensus 45 p~~~~L~~~lA~l~g--------~-~~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~-G~~v~ 113 (376)
T PRK06460 45 PTVLELTKKIVELEN--------A-EMGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNW-GVNVD 113 (376)
T ss_pred ccHHHHHHHHHHHhC--------C-CcEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhh-CcEEE
Confidence 367999999999986 2 234555 55568999999999999999999987654 344556666 99988
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.++.+ +.+.+++.++ +++++|++++|+||||.+++.++ |.++|+++|+++|+||+|+.. +.
T Consensus 114 ~~~~~-------~~~~l~~~~~------~~tklV~l~sp~NPtG~v~d~~~---I~~la~~~g~~vivDea~~~~-~~-- 174 (376)
T PRK06460 114 ASNPG-------SDNIIEKAKS------KRYDVVFVENITNPLLRVVDITE---LSKVCKENGSILIVDATFSTP-IN-- 174 (376)
T ss_pred EECCC-------CHHHHHHhcC------CCceEEEEECCCCCCCcccCHHH---HHHHHHHcCCEEEEECCcCcc-cc--
Confidence 87754 1233333322 37899999999999999999765 788888999999999999742 11
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCch
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~ 320 (469)
...+ ..+.+++++|+||.|+ ..+.++||++++++ +.+.+.+....+..+. ....+..+++..
T Consensus 175 ----~~~l----------~~~~divv~S~sK~l~G~~~~~~G~~~~~~~-l~~~l~~~~~~~g~~~-~~~~a~~~l~~~- 237 (376)
T PRK06460 175 ----QKPL----------ELGADIVVHSASKFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSL-DPHAAYLTLRGI- 237 (376)
T ss_pred ----CChh----------hcCCCEEEeecceeccCCCCceEEEEecCHH-HHHHHHHHHHhcCCCC-CHHHHHHHHhch-
Confidence 1111 1245688999999985 22478999998544 5554444433222221 112333444443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
++++.+.+++.++++.+.+.|+++
T Consensus 238 ---~~l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 238 ---KTLKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHcC
Confidence 346777888899999999999976
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=205.04 Aligned_cols=343 Identities=15% Similarity=0.111 Sum_probs=213.2
Q ss_pred CCCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCC-CCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 36 NPTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQ-DYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 36 ~~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
....+||+..+. +.+ .++.+.+++++..+ ....|. +..+..+|+++|++++. .
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~~~~~~~lae~l~~~~~---------~ 103 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALE-------------RGTSYGAPTEAEILLAKEIISRVP---------S 103 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hCCcCCCCCHHHHHHHHHHHHhCC---------c
Confidence 345689998763 323 45666666665321 112233 44567899999998763 2
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhC--CCEEEEeeccC-------CCCcc---cCHH
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRT--GVEIVPIQCTS-------LNGFQ---ITET 176 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~--g~~~~~v~~~~-------~~~~~---~d~~ 176 (469)
.+.|++++|+++|+..+++... ...++|+...++|+++...+.... +......+..+ ...+. .|++
T Consensus 104 ~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 183 (423)
T TIGR00713 104 VEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLE 183 (423)
T ss_pred ccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHH
Confidence 4689999999999999888642 245899999999998754332210 11111111000 00000 1788
Q ss_pred HHHHHHHHHHhcCCceeEEEEe-cCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 177 AIEEAYQLAQKRHLKVKGVLVT-NPSNPLGTTMS-RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 177 ~l~~~i~~~~~~~~~~~~vvl~-~P~NPtG~~~s-~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
++++.+++. ..++++|++. .|+| +|.+.+ .+.+++|.++|++||+++|+||+|.++.++. .+ ..+...
T Consensus 184 ~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~-~~--~~~~~~--- 253 (423)
T TIGR00713 184 ALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL-GG--AQEYFG--- 253 (423)
T ss_pred HHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc-ch--hHHHhC---
Confidence 898888632 2367777774 7788 798887 6899999999999999999999998763322 11 111111
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh---c--ccccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---S--SFGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~---~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
..+. +.+|||.+| +|+|+||++++++ +.+.+... . .....+++++.++.+.|+..+- .++.+..
T Consensus 254 -----~~pD---i~t~sK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~ 322 (423)
T TIGR00713 254 -----VEPD---LTTLGKIIG-GGLPVGAFGGRRE-IMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTEL 322 (423)
T ss_pred -----CCcc---hhhhhhhhc-CCCceeeeeEHHH-HHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHH
Confidence 1122 238999999 9999999999544 44444321 1 1223677888887777653221 1235566
Q ss_pred HHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecc--cccc---c--CChhHHHHHHHHHHHhCCeEEeCCCCCCCCC
Q 043923 330 KKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMR--HLLR---S--NTFEAEMELWKKIVYDVKLNISPGSSCHCTE 401 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~~--~~~~---~--~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~ 401 (469)
++..+..++.+.+.++++++.+.. ..+ .++.+.+. ...+ . .+......++..++ ++||.+.++ .|
T Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~v~~~g-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-~~---- 395 (423)
T TIGR00713 323 DELAKRLAEGLSEVLEDTGIPHTVNRVG-SMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPS-QF---- 395 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeec-cEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecC-Cc----
Confidence 666666777788888877765532 333 33333332 1100 0 01011224555666 579998754 22
Q ss_pred CCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 402 PGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 402 ~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+.+|++.. .+++++++++++|.+++++
T Consensus 396 -~~~~l~~~-~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 396 -EACFLSAA-HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred -cceeeECC-CCHHHHHHHHHHHHHHHhh
Confidence 34788887 5999999999999999865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-22 Score=198.05 Aligned_cols=218 Identities=20% Similarity=0.216 Sum_probs=163.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhh---h
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKW---R 155 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~---~ 155 (469)
+.+|+.+ ....|++++|++++ .+.+++++|+++|+..++.+++++||+|++++|+|+.....+.. .
T Consensus 46 Y~R~~~p-t~~~L~~~lA~l~g----------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 114 (386)
T PRK08045 46 YSRRGNP-TRDVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR 114 (386)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 5667765 46899999999985 24699999999999999999999999999999999864443322 2
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
.|+++..++ ..|++++++++++ ++++|++++|+||||.+++.+ +|.++|+++|+++|+|++|..
T Consensus 115 ~gi~v~~vd-------~~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~di~---~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 115 GCYRVLFVD-------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVDIA---KICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred CCeEEEEeC-------CCCHHHHHHhccc------CCeEEEEECCCCCCCEecCHH---HHHHHHHHcCCEEEEECCCCc
Confidence 245665553 1478888888764 789999999999999999855 577778899999999999975
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhc-cc-ccCcHHHHHHH
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMS-SF-GLVSSQTQYLL 312 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~-~~-~~~s~~~q~~~ 312 (469)
... . .+ ..+ +..++++|++|.++ .++++.|++++.++.+.+.+.... .. ...+++.++.+
T Consensus 179 ~~~--~--~p-l~~------------gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~ 241 (386)
T PRK08045 179 PAL--Q--NP-LAL------------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLL 241 (386)
T ss_pred ccc--C--Cc-hhh------------CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 322 1 11 112 23478999999995 567889999886555544443322 22 23677888888
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
.+.|+. +..+.++..++...+.+.|+++
T Consensus 242 ~rgl~t-------l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 242 LRGLRT-------LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred Hhhhcc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 887765 4566777788888899999887
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=201.93 Aligned_cols=269 Identities=17% Similarity=0.162 Sum_probs=178.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC---------CC-CEEEEccCCCcChH-HHHhhhCCCE------------EEEeeccC
Q 043923 111 TSKIVLTAGATSANETLMFCLAE---------PG-EAFLLPTPYYPGFD-RDLKWRTGVE------------IVPIQCTS 167 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~---------~g-d~Vl~~~P~y~~~~-~~~~~~~g~~------------~~~v~~~~ 167 (469)
.+.+++++++++|+..++..... +| +.|+...-+|.+.. ..+... +.. +..+|.
T Consensus 97 ~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 173 (396)
T PRK04073 97 KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLS-SEEEYKRGFGPMLPGIKKIPY-- 173 (396)
T ss_pred CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhc-CCcccccCCCCCCCCceEeCC--
Confidence 46899999999999999887631 34 67887777776643 332222 211 112221
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHH-HHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRN-ELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 168 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e-~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
.|++.+++.+++ ++++|+++.|+||||.+++.+ .+++|.++|++||+++|+||+|.++...+..+ .
T Consensus 174 -----~d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~-~- 240 (396)
T PRK04073 174 -----GDLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF-A- 240 (396)
T ss_pred -----CCHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH-H-
Confidence 167888887754 788888888899999998764 69999999999999999999999753332211 1
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHH
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQN 324 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~ 324 (469)
.+... ....+ .++||.+|.+|+|+||+++++ .+.+.+... ...+..+++.+.++.+.|+... +
T Consensus 241 ~~~~~--------~~pdi---~~~sK~lg~gg~~ig~~~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~--~- 305 (396)
T PRK04073 241 CDWDN--------VTPDM---YILGKALGGGVFPISCVAANR-DILGVFTPGSHGSTFGGNPLACAVSIAALEVLE--E- 305 (396)
T ss_pred hhhcC--------CCCCE---EEecccccCCCCcceEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--h-
Confidence 11111 11222 368999998889999999954 444444322 1223367888888888775321 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC
Q 043923 325 YISENKKRLKQRHRKLVSGLEKAG---ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 401 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~~g---~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~ 401 (469)
+...++.+++++++.+.|++++ +....+. |+|++++++. ...+++.+++ ++||.+.+. +
T Consensus 306 --~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~-g~~~~~~~~~--------~~~~~~~~l~-~~Gv~~~~~------~ 367 (396)
T PRK04073 306 --EKLPERSLELGEYFKEQLKEIDNPMIKEVRGR-GLFIGVELNE--------PARPYCEALK-EEGLLCKET------H 367 (396)
T ss_pred --cCHHHHHHHHHHHHHHHHHhhcCCcccceecc-eEEEEEEecc--------hHHHHHHHHH-HCCeEEecC------C
Confidence 1223444556777888887753 3333344 5788888762 1235666665 569999763 2
Q ss_pred CCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 402 PGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 402 ~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
++++|+++.. .+++++++++++|++++
T Consensus 368 ~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 368 ETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred CCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 4689999754 49999999999999875
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=184.47 Aligned_cols=147 Identities=56% Similarity=1.037 Sum_probs=129.5
Q ss_pred CCccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCC-ccccccc
Q 043923 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDG-QSIFREL 79 (469)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (469)
+++||+++++..+++++|||..|+.+..++|++..+|.|+|+|+++||.+..+.+..++.+.++.....+++ .+.+.+.
T Consensus 6 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~ 85 (153)
T PLN02994 6 NQLLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDI 85 (153)
T ss_pred hhhhhhhcccccCCCCchHHHHHHHHhcCCCCcccCCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999998865443333322 2223344
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG 147 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~ 147 (469)
..|++..|.++||+++|+|++++++..+.+++++|++|+|+++++..++.+|+++||.|++++|+|+.
T Consensus 86 a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 86 ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 66999999999999999999999886566889999999999999999999999999999999999973
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-22 Score=198.07 Aligned_cols=210 Identities=17% Similarity=0.220 Sum_probs=152.8
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~~g~~~~~ 162 (469)
-..+|++.+|++++ .+++++++|+++|+..++.+++++||.|+++.+.|.+... .+... |++++.
T Consensus 62 ~~~~le~~la~l~g----------~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~-G~~v~~ 130 (390)
T PRK08133 62 TVTMFQERLAALEG----------AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GIETTF 130 (390)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHc-CcEEEE
Confidence 36889999999875 4568999999999999999999999999999999977554 34445 999998
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+ |++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+..
T Consensus 131 vd~~-------d~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~-- 192 (390)
T PRK08133 131 VDLT-------DLDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ-- 192 (390)
T ss_pred ECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 8763 67888888764 8899999999999999987 5568888999999999999987432211
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhcccc-cCcHHHHHHHHHHhcCch
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSSFG-LVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~~ 320 (469)
+ ..+ +..+++.|+||.++.+|.++ |+++++++.+.+........+ .+++..++++ ++..+
T Consensus 193 --p-l~~------------g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~---l~gl~ 254 (390)
T PRK08133 193 --P-LKL------------GADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVF---LKGLE 254 (390)
T ss_pred --c-hhh------------CCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHH---Hcccc
Confidence 1 111 34578899999998889998 555665544433333333332 2344443333 33222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
.+..+.++..++...+.+.|+++
T Consensus 255 ----tl~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 255 ----TLSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHhC
Confidence 24555666667888899999877
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=196.31 Aligned_cols=217 Identities=15% Similarity=0.253 Sum_probs=153.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~ 154 (469)
..+|+.+ ...+|++++|++++ . +..+++++++.++..++.+++++||.|+++.|.|..+...+ ..
T Consensus 59 y~r~~~p-~~~~Le~~lA~l~G--------~--~~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 127 (398)
T PRK07504 59 YSRYSNP-TVDMFEKRMCALEG--------A--EDARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPR 127 (398)
T ss_pred eecCCCc-hHHHHHHHHHHHhC--------C--CeeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhh
Confidence 4557654 46899999999985 2 23345677788888888888899999999999999765433 34
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |+++..++. +|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+
T Consensus 128 ~-G~~v~~vd~-------~d~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a 190 (398)
T PRK07504 128 Y-GIESTLVDG-------LDLDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFA 190 (398)
T ss_pred c-CeEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcc
Confidence 4 888888751 588999988865 8999999999999999998 4557888889999999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEE-EEEecCHHHHHHHHH-hcccc-cCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG-AIYSNDDMVVAAATK-MSSFG-LVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG-~li~~~~~~~~~~~~-~~~~~-~~s~~~q~~ 311 (469)
...+. ....+ +..+++.|+||.++.+|.++| +++++++.+.+.+.. ....+ .++++..++
T Consensus 191 ~~~~~-----~~~~~------------gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~ 253 (398)
T PRK07504 191 TPLFQ-----KPLEL------------GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWT 253 (398)
T ss_pred ccccC-----Cchhh------------CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 54331 11112 456788999999988999996 555655545433332 22222 244444444
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.+-|+. +..+.++..++...+.+.|+++
T Consensus 254 ~l~~L~t-------l~~R~~~~~~na~~la~~L~~~ 282 (398)
T PRK07504 254 LLKGLET-------LPVRVRQQTESAAAIADFLAGH 282 (398)
T ss_pred HHhccch-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 4444433 3445555567777888888876
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=195.53 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=159.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----Hhhh
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWR 155 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~ 155 (469)
.+|+. +...+|++.+|++++ .+..++++++++|+..++.+++++||.|+++.+.|...... +...
T Consensus 35 ~r~~~-p~~~~le~~la~l~g----------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~ 103 (369)
T cd00614 35 SRIGN-PTVDALEKKLAALEG----------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKL 103 (369)
T ss_pred ECCCC-hhHHHHHHHHHHHHC----------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhc
Confidence 34443 356899999999875 34567778889999999999999999999999999886543 3344
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
|+++..++.+ |++++++++++ ++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|++|+.
T Consensus 104 -g~~~~~v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~ 166 (369)
T cd00614 104 -GIEVTFVDPD-------DPEALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFAT 166 (369)
T ss_pred -CeEEEEeCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 8888888753 57888888754 7899999999999999998 55688889999999999999975
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhcc-c-ccCcHHHHHHH
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSS-F-GLVSSQTQYLL 312 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~-~-~~~s~~~q~~~ 312 (469)
.++. ... ..+..+++.|+||.+|.+| ++.|+++++++.+.+.+..... + +.++++..+++
T Consensus 167 ~~~~-----~~~------------~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~ 229 (369)
T cd00614 167 PYLQ-----RPL------------ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLL 229 (369)
T ss_pred hhcC-----Chh------------hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 4321 111 1245688999999997665 8899999976345444443322 2 23566665555
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG 348 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g 348 (469)
...++. +..+.++..++...+.+.|++++
T Consensus 230 l~~l~t-------l~~r~~~~~~na~~la~~L~~~~ 258 (369)
T cd00614 230 LRGLKT-------LPLRMERHSENALKVAEFLEKHP 258 (369)
T ss_pred HcCCCC-------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 555533 34456667778888999998874
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=190.22 Aligned_cols=302 Identities=16% Similarity=0.141 Sum_probs=211.1
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEE
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIV 161 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~ 161 (469)
++...-+.+|++.+|+|++ .+..++.+++-.|...++.+|++++|.|+...-.|-+....++.. +++++
T Consensus 80 ~G~~~~h~~LE~~lA~f~g----------~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls-~a~~~ 148 (388)
T COG0156 80 SGTSDLHVELEEELADFLG----------AEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLS-RAEVR 148 (388)
T ss_pred cCCcHHHHHHHHHHHHHhC----------CCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhC-CCcEE
Confidence 4444557899999999996 344444455555777788999999999999999999999999877 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.+..+ |++.|++.+++....+.+.++|+...--...|.+.| +.+|++++++|++++++||+|+-.+++..
T Consensus 149 ~f~Hn-------D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~ 218 (388)
T COG0156 149 RFKHN-------DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPN 218 (388)
T ss_pred EecCC-------CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCC
Confidence 88853 789999999874322223555566555678999988 55588888899999999999997777644
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-hccccc---CcHHHHHHHHHHhc
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-MSSFGL---VSSQTQYLLSALLS 317 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-~~~~~~---~s~~~q~~~~~~l~ 317 (469)
. ..+.+... + ...+.+|+++||||+||..| ||+.++ ..+.+.+.+ .+++.. .++....++.+.++
T Consensus 219 G-rG~~e~~g-~-----~~~~vdi~~gTlsKAlGs~G---g~v~g~-~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~ 287 (388)
T COG0156 219 G-RGLAEHFG-L-----EPEEVDIIVGTLGKALGSSG---GYIAGS-AALIDYLRNRARPFIFSTALPPAVAAAALAALR 287 (388)
T ss_pred C-ccHHHHhC-C-----CCccceEEEEEchhhhcccC---ceeeCc-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHH
Confidence 3 23333321 0 12356899999999999888 999985 445555444 344432 23333333333433
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCC
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC 397 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f 397 (469)
.. +.....+++++++...+.+.+...++.+.+..+ .++.+-+.+. ....++...++++ ||.+.+....
T Consensus 288 ~l----~~~~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s-~I~pv~~gd~------~~a~~~s~~l~~~-Gi~v~~i~~P 355 (388)
T COG0156 288 IL----EEGPERRERLQELAAFFRSLLKALGLVLLPSES-PIIPVILGDE------ERALEASRALLEE-GIYVSAIRPP 355 (388)
T ss_pred HH----HhCHHHHHHHHHHHHHHHHHHHhcCCccCCCCC-CeeeeEeCCH------HHHHHHHHHHHHC-CeeEeeecCC
Confidence 21 123556777888888888777777887755555 5665666532 2244566777766 9999877655
Q ss_pred CC-CCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 398 HC-TEPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 398 ~~-~~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
.. .+...+|++++. +++++|+.+++.|.++
T Consensus 356 TVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 356 TVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 43 234689999977 6999999999999875
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-22 Score=200.91 Aligned_cols=294 Identities=15% Similarity=0.214 Sum_probs=198.2
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEEccCCCcChHHHH---hhhCCCE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----EPGEAFLLPTPYYPGFDRDL---KWRTGVE 159 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~---~~~~g~~ 159 (469)
...++|+.+|++++ .++++|++++|+++++..++.++. ++||.|+++.+.|+.+...+ +.. |++
T Consensus 50 ~~~~~r~~ia~~~g--------~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~-g~~ 120 (404)
T PRK14012 50 AVDIARNQIADLIG--------ADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFE 120 (404)
T ss_pred HHHHHHHHHHHHcC--------cCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhC-CCE
Confidence 35677888888875 567889999999999999887763 78999999999998775443 334 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
++.++.+. ++.+|++.+++++++ ++++|++++++||||.+++. ++|.++|+++|+++|+|++++ ++
T Consensus 121 ~~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~~---~~I~~la~~~g~~vivD~a~~---~g 186 (404)
T PRK14012 121 VTYLDPQS--NGIIDLEKLEAAMRD------DTILVSIMHVNNEIGVIQDI---AAIGEICRERGIIFHVDAAQS---VG 186 (404)
T ss_pred EEEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECcCCCccchhhH---HHHHHHHHHcCCEEEEEcchh---cC
Confidence 99998873 457899999999865 78999999999999999985 558888999999999999997 33
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--------ccccCcHHHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--------SFGLVSSQTQYL 311 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--------~~~~~s~~~q~~ 311 (469)
..+ ..+.. .+..+++.|++|.+| |+ ++|+++++++.......... ..++.+......
T Consensus 187 ~~~-~~~~~------------~~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~ 251 (404)
T PRK14012 187 KVP-IDLSK------------LKVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVG 251 (404)
T ss_pred Ccc-cCccc------------CCCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHH
Confidence 221 12111 134466679999887 54 69999886543221111000 011222222222
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC-----CceEEEEEecccccccCChhHHHHHHHHHHH
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS-----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVY 385 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~-----~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~ 385 (469)
+.+++... +.......++.++.++++.+.|+++ ++.+.+. ...+++|+.+... .++...+
T Consensus 252 l~~al~~~---~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l-- 317 (404)
T PRK14012 252 MGEAARIA---KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG---------ESLIMAL-- 317 (404)
T ss_pred HHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH---------HHHHHhC--
Confidence 32333211 2223445566677777788888765 4444321 2234566655321 1233333
Q ss_pred hCCeEEeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 386 DVKLNISPGSSCHCT-----------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 386 ~~GI~v~pg~~f~~~-----------------~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++.|..|..|.+. ..+.+|++++. .++++++++++.|+++++..+.
T Consensus 318 -~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 318 -KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred -CCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 37888887666432 13689999987 4999999999999999887654
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=193.92 Aligned_cols=217 Identities=16% Similarity=0.167 Sum_probs=162.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~ 154 (469)
+.+|+.+ ....|++++|++.+ .+++++++|+++|+..++.+++++||.|+++.|+|......+ ..
T Consensus 47 Y~R~~np-t~~~Le~~lA~leg----------~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~ 115 (388)
T PRK08861 47 YTRSGNP-NRGLLEQTLSELES----------GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANK 115 (388)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhc
Confidence 5566655 46999999999985 589999999999999999999999999999999998644332 22
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |+++..++. .|++++++++++ ++++|++++|+||||.+++.+ +|.++|+++|+++|+|++|.
T Consensus 116 ~-gi~v~~vd~-------~d~e~l~~~i~~------~tklV~lesP~NPtG~v~dl~---~I~~la~~~gi~vIvDea~~ 178 (388)
T PRK08861 116 G-DFKVQFVDQ-------SDAAALDAALAK------KPKLILLETPSNPLVRVVDIA---ELCQKAKAVGALVAVDNTFL 178 (388)
T ss_pred C-CeEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCcc
Confidence 3 677777752 377888888764 889999999999999999955 57888889999999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC-CcceEEEEEecCHHHHHHHHHhccc-c-cCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL-PGFRVGAIYSNDDMVVAAATKMSSF-G-LVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~-~GlRiG~li~~~~~~~~~~~~~~~~-~-~~s~~~q~~ 311 (469)
...+.. + ..+ +..+++.|++|.++- .++..|++++.++.+.+.+...+.. + .+++...+.
T Consensus 179 ~~~~~~-p----l~~------------GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l 241 (388)
T PRK08861 179 TPVLQK-P----LEL------------GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYM 241 (388)
T ss_pred ccccCC-C----ccc------------CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHH
Confidence 543221 1 111 345888999999964 4578899988665555544433322 2 356777666
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.+-|+. +.-+.++..++...+.+.|+.+
T Consensus 242 ~~rgl~T-------l~lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 242 TLRGIRT-------LGARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred HHhcCCC-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 6666655 3445566677778888889877
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=194.14 Aligned_cols=328 Identities=13% Similarity=0.120 Sum_probs=213.3
Q ss_pred CCCCCeeeeeccc--cccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 35 QNPTGIIQMGLAE--NQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 35 ~~~~~~i~L~~~~--n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
.....+||+..+- ..++ .+.+.+++.+.. .....++. ....++++++|+.+.. .+
T Consensus 26 ~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~-------------~~~~~~~~-~~~~~~~~~la~~l~~--------~~ 83 (375)
T PRK04260 26 TDGKKYLDFSSGIGVTNLGFHPQVQQALQKQA-------------GLIWHSPN-LYLNSLQEEVAQKLIG--------DK 83 (375)
T ss_pred CCCCEEEECCCCcccccCCCCHHHHHHHHHHH-------------HhcCcccC-ccCCHHHHHHHHHHhc--------Cc
Confidence 3445689987652 2233 244666655531 11122222 2346788999988751 23
Q ss_pred C-cEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChH-HHHhhhCCCEEE---------EeeccCCCCcccCHHHH
Q 043923 112 S-KIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFD-RDLKWRTGVEIV---------PIQCTSLNGFQITETAI 178 (469)
Q Consensus 112 ~-~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~-~~~~~~~g~~~~---------~v~~~~~~~~~~d~~~l 178 (469)
+ .+++++++++|+..++.... .+++.|++.+..|++.. ..+... |.+.. .++.. .+ .|++.+
T Consensus 84 ~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~-~dl~~l 158 (375)
T PRK04260 84 DYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSAT-GQDKIKDGFGDGVPHFSYA---IF-NDLNSV 158 (375)
T ss_pred CCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhcc-CCcccCCCCCCCCCCeEEe---CC-CCHHHH
Confidence 3 46889999999998887752 34578888888877633 333222 22111 11110 11 378888
Q ss_pred HHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccccc
Q 043923 179 EEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 257 (469)
Q Consensus 179 ~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~ 257 (469)
++.+.+ ++.+|++..++|++|... +.+.++++.++|+++|+++|+||+|.++...+.. .+. ....
T Consensus 159 ~~~l~~------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~-~~~-~~~~------ 224 (375)
T PRK04260 159 KALVNK------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKL-YAF-EHYG------ 224 (375)
T ss_pred HHhcCC------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch-hhh-HhhC------
Confidence 887643 678888888899999864 5678999999999999999999999874332221 111 1111
Q ss_pred CCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 043923 258 TQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 258 ~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 335 (469)
..+. +.||||+++ +|+|+||+++++. +.+.+... ...+..+++.+.++.++|..... .+++++.++..+.
T Consensus 225 --~~pd---i~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~ 296 (375)
T PRK04260 225 --IEPD---IFTLAKGLA-NGVPVGAMLAKSS-LGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNY 296 (375)
T ss_pred --CCCC---EEEeccccc-CCcceEEEEEcHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 1122 238999998 8999999999654 44443321 12233578888888888866543 4556777777777
Q ss_pred HHHHHHHHHHhcC-CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CC
Q 043923 336 RHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 413 (469)
Q Consensus 336 ~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~ 413 (469)
.++.+.+.+.+++ +.... ..|+++|++++.. ..++..++. ++||.+.|+ +.+.+|+++.. ++
T Consensus 297 ~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~--------~~~~~~~l~-~~Gi~v~~~------~~~~lR~~~~~~~t 360 (375)
T PRK04260 297 LQEQLQKALQDKETVTTVR-GLGYMIGIETTAD--------LSQLVEAAR-DKGLIVLTA------GTNVIRLLPPLTLT 360 (375)
T ss_pred HHHHHHHHHhhCCCeeEEe-ccceEEEEEecCc--------HHHHHHHHH-hCCCEEecC------CCCEEEEcCCCccC
Confidence 7788887777664 22232 3679999998421 224555554 679999875 24679999954 69
Q ss_pred HHHHHHHHHHHHHH
Q 043923 414 EDTLKLSMQRLKAF 427 (469)
Q Consensus 414 ~e~i~~~l~~L~~~ 427 (469)
++++++++++|+++
T Consensus 361 ~~~i~~~l~~l~~~ 374 (375)
T PRK04260 361 KEEIEQGIAILSEV 374 (375)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=198.74 Aligned_cols=296 Identities=15% Similarity=0.192 Sum_probs=202.0
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEEccCCCcChHHHH---hhhCCCE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----EPGEAFLLPTPYYPGFDRDL---KWRTGVE 159 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~---~~~~g~~ 159 (469)
...++|+.++++++ +++++|++++|+++++..++.++. ++||.|++..+.|..+...+ +.. |++
T Consensus 48 ~~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~-g~~ 118 (402)
T TIGR02006 48 AVENARNQVAELIG--------ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLERE-GFE 118 (402)
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhc-CCE
Confidence 45677888888875 578899999999999999887753 68999999999998765543 344 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
++.++.+. ++.+|++.+++++++ +++++++++|+||||.+.+.+ +|.++|+++|+++++|++++ ++
T Consensus 119 v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~~~~~---~I~~l~~~~g~~livD~a~a---~g 184 (402)
T TIGR02006 119 VTYLPPKS--NGLIDLEELKAAIRD------DTILVSIMHVNNEIGVIQDIA---AIGEICRERKVFFHVDAAQS---VG 184 (402)
T ss_pred EEEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECCCcCceecccHH---HHHHHHHHcCCEEEEEcchh---cC
Confidence 99999873 456899999988864 788999999999999999854 58888899999999999997 33
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--------cccccCcHHHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--------SSFGLVSSQTQYL 311 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--------~~~~~~s~~~q~~ 311 (469)
..+ ..+. ..+..+++.|.+|.+|.+| +|++++.++......... ...++.+.....+
T Consensus 185 ~~~-~~~~------------~~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~a 249 (402)
T TIGR02006 185 KIP-INVN------------ELKVDLMSISGHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVG 249 (402)
T ss_pred Ccc-cCcc------------ccCCCEEEEehhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHH
Confidence 221 1211 1245577789999887445 888877544322110000 0113344444444
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC---ceEEEEEecccccccCChhHHHHHHHHHHHhC
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV 387 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~ 387 (469)
+...++. +...++...+++++.++++.+.|+++ ++.+..+. ....+.+.++. .. ..++... + .
T Consensus 250 l~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~-~~------~~~~~~~-l--~ 316 (402)
T TIGR02006 250 MGEAFRI---AKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY-VE------GESLIMA-L--K 316 (402)
T ss_pred HHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC-cC------HHHHHHh-c--C
Confidence 4444432 23346667778888889999998876 55554221 10011122221 11 1123322 2 4
Q ss_pred CeEEeCCCCCCCC-----------------CCCeEEEEeecC-CHHHHHHHHHHHHHHHHhhcc
Q 043923 388 KLNISPGSSCHCT-----------------EPGWFRVCFANM-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 388 GI~v~pg~~f~~~-----------------~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+|.++.|..+... ..+.+|+|++.. +++|++++++.|+++++..+.
T Consensus 317 ~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 317 DLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred CEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999988776531 137899999874 999999999999999887655
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=191.05 Aligned_cols=282 Identities=16% Similarity=0.162 Sum_probs=186.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~ 154 (469)
+.+|+.+ ...+|++++|+++. .+. ++++++++|+..++.+++++||+|+++.|.|.++...+ ..
T Consensus 45 y~ry~~p-~~~~Le~~lA~l~~----------~~~-v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~ 112 (366)
T PRK07582 45 YGRASNP-TWRALEAALGELEG----------AEA-LVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP 112 (366)
T ss_pred eECCCCc-cHHHHHHHHHHHcC----------CCE-EEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc
Confidence 5667754 67999999999861 344 45555567999999999999999999999998886644 33
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |++++.++.+.. .+ .+. +++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.
T Consensus 113 ~-G~~v~~v~~~~~------~~----~~~------~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 113 L-GVTVREAPTAGM------AE----AAL------AGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred C-eEEEEEECCCCh------HH----Hhc------cCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCC
Confidence 4 999999886521 11 111 27899999999999998876 5668999999999999999996
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~ 311 (469)
.. +... + .++ +..++++|+||.+ |.+|+|+||++++++.+.+.+...+.. ..++++..+.
T Consensus 173 ~~-~~~~---p-~~~------------g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l 235 (366)
T PRK07582 173 TP-LGQR---P-LEL------------GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWL 235 (366)
T ss_pred Cc-cccC---c-hhc------------CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 32 1111 1 112 2347889999998 456899999998666665555443332 2356666666
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-ee----c--C----------CceEEEEEecccccccCCh
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CL----K--S----------NAGLFCWVDMRHLLRSNTF 373 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~----~--~----------~~g~~~~v~~~~~~~~~~~ 373 (469)
+.+.++.. ..+.++..++...+.+.|+++ .+. |. + | ..|-.+.+.+++.
T Consensus 236 ~~r~l~tl-------~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~------ 302 (366)
T PRK07582 236 AHRSLGTL-------GLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADA------ 302 (366)
T ss_pred HHhccccH-------HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCH------
Confidence 66666542 344456667888888889877 332 22 1 1 0233555666421
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCCCCC--------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 374 EAEMELWKKIVYDVKLNISPGSSCHC--------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~f~~--------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+.+.+.+...++... +..+|. ..++.||+|++. |+.+.+++.|+++++.
T Consensus 303 ----~~~~~~~~~l~~~~~-~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~~ 365 (366)
T PRK07582 303 ----AAAERFVAASRLVVA-ATSFGGVHTSADRRARWGDAVPEGFVRLSCGI---EDTDDLVADLERALDA 365 (366)
T ss_pred ----HHHHHHHHhCCccee-cccCCCccchhhhHHHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 223445555565443 111221 124689999996 4456667777776653
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=191.65 Aligned_cols=293 Identities=15% Similarity=0.141 Sum_probs=173.3
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCC-EEEEccCCCcChH---HHHhhhCCCE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----EPGE-AFLLPTPYYPGFD---RDLKWRTGVE 159 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd-~Vl~~~P~y~~~~---~~~~~~~g~~ 159 (469)
..+|++.++++++ . +.++.+ ++++|...++..+. .+|+ .|++.+..|++-. ...... +.+
T Consensus 93 ~~~l~~~la~~~~--------~--~~~~~~-sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~-~~~ 160 (402)
T PRK07505 93 LKDLEEALSELFG--------A--SVLTFT-SCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICAD-ETE 160 (402)
T ss_pred HHHHHHHHHHHhC--------C--CEEEEC-ChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhc-CCe
Confidence 4666777776653 2 444455 45567776665432 2232 3666665554321 112222 567
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
++.+|.+ |++++++++++ +++++++++|+||||.+++ +++|.++|++|++++|+||+|+...|+
T Consensus 161 v~~~~~~-------d~~~l~~~~~~------~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g 224 (402)
T PRK07505 161 VETIDHN-------DLDALEDICKT------NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYG 224 (402)
T ss_pred EEEeCCC-------CHHHHHHHHhc------CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcC
Confidence 7777642 78888888764 5678999999999999999 455788899999999999999643343
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc----cCcHHHHHHHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG----LVSSQTQYLLSAL 315 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~----~~s~~~q~~~~~~ 315 (469)
............. ..++++++++|+||+||.+| ||++++++.+.+.+......+ ++++++..++.+.
T Consensus 225 ~~g~~~~~~~~~~------~~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~ 295 (402)
T PRK07505 225 KNGEGYVRSELDY------RLNERTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILAS 295 (402)
T ss_pred CCCCchHHHHcCC------CCCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHH
Confidence 2211111111110 02477899999999999776 888765666666555433222 2344555555555
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
+.-.. .+++.+.++.++++.+.+...+... + ...+.++.++.++.. ....++.+.|+ ++||.++++.
T Consensus 296 l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~---~-~g~~~~i~~~~~~~~------~~~~~~~~~l~-~~Gi~v~~~~ 362 (402)
T PRK07505 296 AEIHL--SEELDQLQQKLQNNIALFDSLIPTE---Q-SGSFLPIRLIYIGDE------DTAIKAAKQLL-DRGFYTSPVF 362 (402)
T ss_pred HHHHh--ccCcHHHHHHHHHHHHHHHHHHHhc---C-CCCCCCEEEEEeCCH------HHHHHHHHHHH-HCCCeEeeec
Confidence 54100 1123344455555544443322111 1 111212233333211 12335666666 6699999884
Q ss_pred CCCCC-CCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 396 SCHCT-EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 396 ~f~~~-~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+... ++.++|++++. ++++++++++++|++++++
T Consensus 363 ~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 363 FPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 43221 34689999986 4999999999999998754
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=192.93 Aligned_cols=293 Identities=14% Similarity=0.096 Sum_probs=190.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~ 154 (469)
+.+|+.+ ...+|++++|++++ .+++++++|+++|+..++.+++++||.|+++.|+|..+.. .+..
T Consensus 59 Y~r~~~p-t~~~Le~~lA~l~g----------~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 127 (394)
T PRK07050 59 YGLHATP-TSLALAQRLAEIEG----------GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD 127 (394)
T ss_pred cCCCCCH-HHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh
Confidence 4556544 46888888888774 5689999999999999999999999999999999998764 3444
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |+++..++.. +.+.+++++++ ++++|++++|+||+|. ..++++|+++|+++|+++|+|++|.
T Consensus 128 ~-Gi~v~~vd~~-------~~~~l~~~i~~------~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a 190 (394)
T PRK07050 128 F-GITVRFYDPL-------IGAGIADLIQP------NTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYS 190 (394)
T ss_pred c-CeEEEEECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCcc
Confidence 5 9999887632 34667777654 8999999999999975 5568889999999999999999997
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhccc-c-cCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMSSF-G-LVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~~~-~-~~s~~~q~~ 311 (469)
...+- . .+ ..+..+++.|+||.++ ..+++.|++++.++.+.+.++..+.. + ..++...+.
T Consensus 191 ~~~~~-----~--~l----------~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l 253 (394)
T PRK07050 191 AGLAF-----K--PF----------EHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSL 253 (394)
T ss_pred ccccc-----C--HH----------HcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 42211 1 11 2245688999999996 34567899988666665555443332 2 355555554
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecC----------------CceEEEEEecccccccCCh
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKS----------------NAGLFCWVDMRHLLRSNTF 373 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~----------------~~g~~~~v~~~~~~~~~~~ 373 (469)
+.+.+.+ +..+.++..++...+.+.|+++ ++. +..| ..|-.+.+.+..... .
T Consensus 254 ~lr~l~t-------l~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~---~ 323 (394)
T PRK07050 254 VLRGLPS-------LQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYS---P 323 (394)
T ss_pred HHcCCCc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCC---H
Confidence 4444443 2334555556666788888876 332 2211 122234455542111 1
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCCCCC---------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 374 EAEMELWKKIVYDVKLNISPGSSCHC---------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~f~~---------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
.+..+++.. ++..++.+.-|..... ..++.||||++. |+.+.+++.|.++++.
T Consensus 324 ~~~~~~~~~-l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl---E~~~dl~~dl~~al~~ 391 (394)
T PRK07050 324 AQVDAFVEA-LELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL---EDEADLIADLEQALEA 391 (394)
T ss_pred HHHHHHHHc-CCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc---CCHHHHHHHHHHHHHH
Confidence 222233333 3444554443332210 113689999995 5566677777776653
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=192.48 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=156.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh----HHHHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF----DRDLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~----~~~~~~ 154 (469)
..+|+.+ ...+|++.+|++.+ ..++++ ++++++|+.+++.+++++||.|+++.|.|... ...+..
T Consensus 54 y~R~~~p-~~~~Le~~lA~l~g---------~~~~v~-~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~ 122 (405)
T PRK08776 54 YTRSGNP-TRDLLGEALAELEG---------GAGGVI-TATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKK 122 (405)
T ss_pred ccCCCCh-HHHHHHHHHHHHhC---------CCceEE-EcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHh
Confidence 4455544 34788888888775 234554 45557999999999999999999999999873 333444
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |++++.++. .|++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|++||+|++|.
T Consensus 123 ~-g~~v~~v~~-------~d~~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 123 G-HFALITADL-------TDPRSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred c-CcEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCc
Confidence 4 888888764 267888888754 7899999999999999976 6668889999999999999997
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC-cceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~-GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~ 311 (469)
.... ..++ .+ +..+++.|.+|.++.+ ++..|+++++++.+.+.+...... ...+++.+++
T Consensus 186 ~~~~----~~pl-~~------------gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l 248 (405)
T PRK08776 186 SPAL----QKPL-EF------------GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFL 248 (405)
T ss_pred cccc----CCcc-cc------------cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4211 1111 12 3347889999999745 578899988766665544332221 2356666666
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+...++ +++.+.++..++...+.+.|+++
T Consensus 249 ~~~gl~-------tl~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 249 TLRGLR-------TLDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred HHhhhC-------cHHHHHHHHHHHHHHHHHHHHcC
Confidence 554433 35667778888888999999876
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=193.43 Aligned_cols=214 Identities=12% Similarity=0.172 Sum_probs=153.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhC
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRT 156 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~ 156 (469)
+|+.+ ...+|++.+|++++ .+..++++++++|+..++.+++++||.|+++.|+|...... +...
T Consensus 60 r~~~p-~~~~le~~lA~l~g----------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~- 127 (398)
T PRK08249 60 RNTNP-TVQAFEEKVRILEG----------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRM- 127 (398)
T ss_pred CCCCh-HHHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhC-
Confidence 44443 46899999999985 34567777778999999999999999999999999875433 3344
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|+++..++. .|++.+++++++ ++++|++++|+||||.+++. ++|.++|+++|+++|+|++|+..
T Consensus 128 Gi~v~~vd~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~dl---~~I~~la~~~gi~livD~t~a~~ 191 (398)
T PRK08249 128 GVDVTLCET-------GDHEQIEAEIAK------GCDLLYLETPTNPTLKIVDI---ERLAAAAKKVGALVVVDNTFATP 191 (398)
T ss_pred CeEEEEcCC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCccCCH---HHHHHHHHHcCCEEEEECCcCcc
Confidence 888877653 478899988865 78999999999999999994 45888899999999999999854
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhccc-c-cCcHHHHHHHH
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSSF-G-LVSSQTQYLLS 313 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~~-~-~~s~~~q~~~~ 313 (469)
+.. . ++ .. +..++++|+||.+|.+|.++ |++++ ++.+.+.+...+.. + ..++..++++.
T Consensus 192 ~~~-~---~l-~~------------~~Divv~S~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l 253 (398)
T PRK08249 192 INQ-N---PL-AL------------GADLVIHSATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLIL 253 (398)
T ss_pred ccC-C---ch-hh------------CCCEEeccCceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 321 1 11 11 23477899999998677776 55565 44454444433322 2 34555555544
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+-++. +..+.++..++.+.+.+.|+++
T Consensus 254 ~~l~t-------L~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 254 RGMKT-------LKLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred hCcch-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 44433 3445566677778888889876
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=194.13 Aligned_cols=217 Identities=18% Similarity=0.263 Sum_probs=159.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh----HHHHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF----DRDLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~----~~~~~~ 154 (469)
+.+|+.+. ..+|++++|++.+ .++.+++++++.|+..++.+++++||.|+++...|.+. ...+..
T Consensus 64 Y~r~~~p~-~~~le~~lA~l~g----------~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~ 132 (403)
T PRK07810 64 YSRYGNPT-VSMFEERLRLIEG----------AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR 132 (403)
T ss_pred eeCCCCch-HHHHHHHHHHHhC----------CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH
Confidence 45677654 6899999999985 34677888888999989989999999999988666443 344555
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |++++.++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+
T Consensus 133 ~-G~~v~~vd~~-------d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 133 W-GVETVFVDGE-------DLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred c-CcEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCC
Confidence 5 9999988742 78889988865 7899999999999999997 5558888999999999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHh-cccc-cCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKM-SSFG-LVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~-~~~~-~~s~~~q~~ 311 (469)
...+.. + ..+ +..+++.|++|.++..|.++ |++++++..+.+.+... ...+ .+++..+++
T Consensus 196 ~~~~~~----~-~~~------------gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l 258 (403)
T PRK07810 196 TPLLQR----G-LPL------------GADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWV 258 (403)
T ss_pred ccccCC----h-hhc------------CCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 543221 1 111 45688899999998788887 78887665554433332 2222 366777776
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.+.|+. +..+.++..++...+.+.|+++
T Consensus 259 ~l~~L~t-------l~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 259 LLKGLET-------LALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred HHhccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 6666654 3445555566667777888876
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-21 Score=189.73 Aligned_cols=296 Identities=17% Similarity=0.189 Sum_probs=209.5
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChHHH----HhhhCCC
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFDRD----LKWRTGV 158 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~----~~~~~g~ 158 (469)
-+++.|+.+|++++ .+ .++|++|.|+|+++..+..++ ..+||.|++..-.|+..... .+.. |+
T Consensus 67 ~~e~aRe~va~~~~--------a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~-Ga 137 (405)
T COG0520 67 LYEAAREAVARFLN--------ADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRT-GA 137 (405)
T ss_pred HHHHHHHHHHHHhC--------CCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhc-Cc
Confidence 46788999999987 56 489999999999999999998 68999999999888765433 3334 99
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
++..+|.++ +..++++.++..+++ ++++|.++.-+|.||.+.| +++|+++|+++|+++++|.+++-
T Consensus 138 ~v~~i~~~~--~g~~~~~~~~~~i~~------~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~--- 203 (405)
T COG0520 138 KVRVIPLDD--DGLLDLDALEKLITP------KTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA--- 203 (405)
T ss_pred EEEEEecCC--CCCcCHHHHHHhcCC------CceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECcccc---
Confidence 999999883 446888999987765 8999999999999999999 55599999999999999999872
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----------------c--
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----------------S-- 299 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-----------------~-- 299 (469)
+.....+.. .+..++..|..|+++-| ..+|.+.+.++.+.+..-.. .
T Consensus 204 -~h~~idv~~------------l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~ 269 (405)
T COG0520 204 -GHLPIDVQE------------LGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAEL 269 (405)
T ss_pred -CccCCCchh------------cCCCEEEEcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCc
Confidence 222233322 26778889999954325 35899999655544320000 0
Q ss_pred ----ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC---ceEEEEEecccccccC
Q 043923 300 ----SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN---AGLFCWVDMRHLLRSN 371 (469)
Q Consensus 300 ----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~---~g~~~~v~~~~~~~~~ 371 (469)
..++++......+.++++-.. .--++...++.++..+++.+.|+++ +++++.+. .+-.+.+.++..
T Consensus 270 p~rfe~gTpn~~~~i~l~aAl~~~~--~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~---- 343 (405)
T COG0520 270 PLRFEAGTPNIAGAIGLAAALDYLL--EIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI---- 343 (405)
T ss_pred chhhccCCchHHHHHhHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC----
Confidence 011222233333333332211 1113556666677778888899887 68887654 355666777653
Q ss_pred ChhHHHHHHHHHHHhCCeEEeCCCCCCCC------CCCeEEEEeecC-CHHHHHHHHHHHHHHHH
Q 043923 372 TFEAEMELWKKIVYDVKLNISPGSSCHCT------EPGWFRVCFANM-SEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 372 ~~~~~~~l~~~ll~~~GI~v~pg~~f~~~------~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~ 429 (469)
...++. ..|.++||.++.|.++... -++.+|+|++.. +++|+++++++|+++.+
T Consensus 344 ---~~~dv~-~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 344 ---HPHDVA-TLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred ---CHHHHH-HHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 122344 4455779999999877642 134599999874 99999999999999865
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=189.90 Aligned_cols=217 Identities=19% Similarity=0.247 Sum_probs=153.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhh---hC
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKW---RT 156 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~---~~ 156 (469)
.+|+. ....+|++++|++++ . ... ++++++++|+..++.+++++||.|+++.|+|......+.. ..
T Consensus 56 ~r~~~-p~~~~Le~~lA~~~g--------~-~~~-i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 124 (388)
T PRK07811 56 ARTGN-PTRTALEEQLAALEG--------G-AYG-RAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRW 124 (388)
T ss_pred cCCCC-ccHHHHHHHHHHHhC--------C-Cce-EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCC
Confidence 34443 467999999999986 1 223 4445668999999999999999999999999865443322 12
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|+++..++. .|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+..
T Consensus 125 gi~~~~~d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~ 188 (388)
T PRK07811 125 GVEYTPVDL-------SDLDAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASP 188 (388)
T ss_pred CeEEEEeCC-------CCHHHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence 777777653 378889888865 7899999999999998866 556888899999999999999753
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhccc-c-cCcHHHHHHHH
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSF-G-LVSSQTQYLLS 313 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~~-~-~~s~~~q~~~~ 313 (469)
... . + ... +..+++.|++|.++.+| .+.||++++++.+.+.+...+.. + ..++...+.+.
T Consensus 189 ~~~-~---p-~~~------------gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~ 251 (388)
T PRK07811 189 YLQ-Q---P-LAL------------GADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTL 251 (388)
T ss_pred ccC-C---c-hhh------------CCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 221 1 1 111 34588899999998654 67899998777666655444333 2 23444444444
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
..|+. +..+.++..++...+.+.|+++
T Consensus 252 ~~L~t-------l~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 252 RGLKT-------LAVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred hccCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 44443 3445555667778888888876
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=192.46 Aligned_cols=216 Identities=15% Similarity=0.183 Sum_probs=152.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----Hhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~ 154 (469)
..+|+.+ ...+|++++|++++ .+..++++++++|+..++.+++++||.|+++.|.|...... +..
T Consensus 53 y~r~~~p-~~~~le~~lA~l~g----------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~ 121 (391)
T TIGR01328 53 YSRLGNP-TVSNLEGRIAFLEG----------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTK 121 (391)
T ss_pred eeCCCCc-hHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhc
Confidence 4456654 46889999999986 23467788888999999999999999999999988754332 334
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |+++..++.+ |++++++++++ ++++|++++|+||+|.+.+. ++|+++|+++|+++|+|++|+
T Consensus 122 ~-G~~~~~vd~~-------d~e~l~~~i~~------~tklV~le~p~Np~G~v~dl---~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 122 F-GIQVDFINMA-------IPEEVKAHIKD------NTKIVYFETPANPTMKLIDM---ERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred C-CeEEEEECCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCCc
Confidence 4 8888888754 67888888865 78999999999999999984 458888889999999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHh--ccc-c-cCcHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKM--SSF-G-LVSSQTQ 309 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~--~~~-~-~~s~~~q 309 (469)
...+. . . + ..+..+++.|+||.+|.+|.++ |++++ ++.+.+.++.. ... + .+++...
T Consensus 185 ~~~~~-~---~---~----------~~g~Divv~S~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a 246 (391)
T TIGR01328 185 TPMLT-N---P---V----------ALGVDVVVHSATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDA 246 (391)
T ss_pred hhccC-C---c---h----------hcCCCEEEccccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 53221 1 1 1 1134478899999999888875 66666 44444433321 112 2 2444444
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+++...|+. +..+.++..++.+.+.+.|+++
T Consensus 247 ~l~l~~L~t-------l~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 247 WLILRGLKT-------LNIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred HHHHhCcCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 444443433 3344556667778888888876
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-21 Score=191.02 Aligned_cols=217 Identities=20% Similarity=0.296 Sum_probs=154.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH----HHHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD----RDLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~ 154 (469)
..+|+.+ ...+|++.+|++++ .+.+++++++++|+..++.+++++||+|+++.+.|.+.. ..+..
T Consensus 48 y~r~~~p-~~~~le~~la~l~g----------~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~ 116 (380)
T TIGR01325 48 YSRYANP-TVAAFEERIAALEG----------AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPR 116 (380)
T ss_pred eecCCCc-hHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHH
Confidence 3456644 46899999999875 356788999999999999999999999999999887643 23444
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |+++..++.+ |++++++++++ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+
T Consensus 117 ~-g~~v~~v~~~-------d~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 117 F-GIEVSFVDPT-------DLNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred h-CCEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCc
Confidence 5 9999888753 67888887754 7899999999999999987 5558888899999999999997
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhccccc-CcHHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSSFGL-VSSQTQYLL 312 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~~~~-~s~~~q~~~ 312 (469)
...+. . + ..+ +..+++.|+||.++.+|.++ |+++++++.+..........+. +++...+
T Consensus 180 ~~~~~-~---p-l~~------------g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~-- 240 (380)
T TIGR01325 180 TPVLQ-Q---P-LKL------------GADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAW-- 240 (380)
T ss_pred ccccC-C---c-hhh------------CCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHH--
Confidence 54221 1 1 112 34578889999998788887 6677655433332222223332 3333333
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
.+++.... +..+.++..+++..+.+.|+++
T Consensus 241 -~~l~~l~t----l~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 241 -VLLKGLET----LSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred -HHHhccCc----HHHHHHHHHHHHHHHHHHHHcC
Confidence 33333322 4455666777888889999887
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=189.64 Aligned_cols=216 Identities=17% Similarity=0.223 Sum_probs=152.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~ 154 (469)
..+|+.+ ...+|++++|++++ .+..+++++++.|+..++.+++++||+|+++.|.|..... .+..
T Consensus 59 y~r~~~p-~~~~le~~lA~l~g----------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~ 127 (403)
T PRK07503 59 YSRISNP-TLALLEQRMASLEG----------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGE 127 (403)
T ss_pred eeCCCCc-hHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhh
Confidence 3455544 46899999999885 2334666677889999999999999999999999976433 2344
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |+++..++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+
T Consensus 128 ~-G~~v~~vd~~-------d~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 128 F-GVTVRHVDLT-------DPAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred C-CEEEEEeCCC-------CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCc
Confidence 5 9999888753 67888888865 7899999999999999988 5558888889999999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh--ccc--ccCcHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM--SSF--GLVSSQTQ 309 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~--~~~--~~~s~~~q 309 (469)
..+. .. ++ .+ +..+++.|+||.+|.+| ++.|+++.+ +.+.+.++.. ... ..++++.+
T Consensus 191 ~~~~-~~---~l-~~------------g~Di~v~S~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~~s~~~a 252 (403)
T PRK07503 191 TPYL-QR---PL-EL------------GADLVVHSATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAVMSPFDA 252 (403)
T ss_pred cccc-CC---ch-hh------------CCCEEEccccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCCCCHHHH
Confidence 5422 11 11 11 34588899999998665 788998864 4454444321 211 23555655
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.+.+-|+. +..+.++..++...+.+.|+++
T Consensus 253 ~l~l~~L~t-------l~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 253 FLLMRGLKT-------LALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred HHHHcCcch-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 555444433 3334444456677778888876
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=191.37 Aligned_cols=311 Identities=14% Similarity=0.103 Sum_probs=190.9
Q ss_pred HHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChHHHHhhhCCCE---------
Q 043923 92 KKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFDRDLKWRTGVE--------- 159 (469)
Q Consensus 92 r~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~~~~~~g~~--------- 159 (469)
..++|+++....+. +. .+.+++++++++|+..++... .++ ..|+...++|.+....+... +..
T Consensus 86 ~~~la~~l~~~~~~--~~-~~~~~f~~sGsea~e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~-~~~~~~~~~~~~ 160 (425)
T PRK08088 86 YLELCEKMNQKVPG--DF-AKKTLLVTTGSEAVENAVKIARAATKR-SGVIAFTGAYHGRTHYTLAL-TGKVNPYSAGMG 160 (425)
T ss_pred HHHHHHHHHHhCCC--CC-CCEEEEeCCcHHHHHHHHHHHHHHhCC-CeEEEECCccCCccHHHHHh-hCCCCccccCCC
Confidence 34778777654331 11 246666666667666665553 344 45667799998876554433 211
Q ss_pred -------EEEeeccCCCCccc--CHHHHHHHHHHHHhcCCceeEEEEecC--CCCCCCCCCHHHHHHHHHHHHhcCeEEE
Q 043923 160 -------IVPIQCTSLNGFQI--TETAIEEAYQLAQKRHLKVKGVLVTNP--SNPLGTTMSRNELNLLVNIITEKNIHLI 228 (469)
Q Consensus 160 -------~~~v~~~~~~~~~~--d~~~l~~~i~~~~~~~~~~~~vvl~~P--~NPtG~~~s~e~l~~l~~~~~~~~~~iI 228 (469)
.+++|.+. .+... +++.+++.++.. ....++.+|++. | ++++....+.+.+++|.++|++||+++|
T Consensus 161 ~~~~~~~~~~~p~~~-~~~~~~~~~~~l~~~l~~~-~~~~~~aavi~E-pi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI 237 (425)
T PRK08088 161 LMPGHVYRALYPCPL-HGVSEDDAIASIERIFKND-AAPEDIAAIIIE-PVQGEGGFYAASPAFMQRLRALCDEHGIMLI 237 (425)
T ss_pred CCCCCcEEcCCCccc-cCccHHHHHHHHHHHHHhc-cCCCceEEEEEC-cccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 11122221 11111 144566666421 112356655444 5 6787788899999999999999999999
Q ss_pred EeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcH
Q 043923 229 SDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSS 306 (469)
Q Consensus 229 ~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~ 306 (469)
+||+|.++.+.+. ..++ +. .+.+..+.||||+++ +|+|+||++++++ +.+.+.... ..+..++
T Consensus 238 ~Dev~~g~g~~g~-~~~~-~~-----------~~~~pdi~s~sK~l~-~G~rig~v~~~~~-~~~~~~~~~~~~t~~~~~ 302 (425)
T PRK08088 238 ADEVQTGAGRTGT-LFAM-EQ-----------MGVAADLTTFAKSIA-GGFPLAGVTGRAE-VMDAIAPGGLGGTYAGNP 302 (425)
T ss_pred EeccccCCCcCcc-hhHH-hh-----------cCCCCCEEEEecccc-CCCcceeeEecHH-HHhhcCCCCCCCCCCcCH
Confidence 9999997433322 1111 11 123334689999998 9999999999654 444333221 1233678
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc--CChhHHHHHHHHHH
Q 043923 307 QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS--NTFEAEMELWKKIV 384 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~--~~~~~~~~l~~~ll 384 (469)
+.|.++.++|+.... .+++++.++..++.++.+.+.+.+.+........|+++|+.+...... ........++..++
T Consensus 303 ~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~ 381 (425)
T PRK08088 303 IACAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARAR 381 (425)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 899999999987654 455666665555555555555455543111112278999998532210 01122345566655
Q ss_pred HhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 385 YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.||.+.|+..| ++.+|++++. +++++|++++++|++++...
T Consensus 382 -~~Gv~~~~~~~~----~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 382 -DKGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred -hCCCEEecCCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 569998876544 3679999985 58999999999999998753
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=190.69 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=186.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCCcChHHHHhhhCCCEEEE---eeccC--CCCcccCHHH
Q 043923 111 TSKIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGFDRDLKWRTGVEIVP---IQCTS--LNGFQITETA 177 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~---v~~~~--~~~~~~d~~~ 177 (469)
.+.+++++++++|+..+++... .+...|+..+..|++....+....+..... .|+.+ ......|++.
T Consensus 96 ~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 175 (406)
T PRK12381 96 ADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNS 175 (406)
T ss_pred CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHH
Confidence 4799999999999999998752 234679999999988764433321321100 01000 0001136788
Q ss_pred HHHHHHHHHhcCCceeEEEEecCCCCCCCCC--CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccc
Q 043923 178 IEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM--SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 255 (469)
Q Consensus 178 l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~--s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~ 255 (469)
+++.+.+ ++++|++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|.++...+.. .. .....
T Consensus 176 l~~~l~~------~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~-~~-~~~~~---- 242 (406)
T PRK12381 176 ASALIDD------QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGEL-YA-YMHYG---- 242 (406)
T ss_pred HHHhccC------CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcch-hh-hHhhC----
Confidence 8887753 6776666 6999998654 7899999999999999999999999875443332 11 11111
Q ss_pred ccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 043923 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRL 333 (469)
Q Consensus 256 ~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l 333 (469)
..+. +.|+||++| +|+|+||+++++. +.+.+.... ..+..+++.+.++.+.|+... ....++.+
T Consensus 243 ----v~pD---i~t~sK~l~-gG~~ig~~~~~~~-~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~-----~~~~~~~~ 308 (406)
T PRK12381 243 ----VTPD---VLTTAKALG-GGFPIGAMLTTEK-CASVMTVGTHGTTYGGNPLASAVAGKVLELIN-----TPEMLNGV 308 (406)
T ss_pred ----CCCC---EEEehhhhh-CCCceEEEEEcHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-----hccHHHHH
Confidence 1122 249999998 9999999999544 444443321 122357788887777664321 12356667
Q ss_pred HHHHHHHHHHHHhcC--Cc--eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe
Q 043923 334 KQRHRKLVSGLEKAG--IS--CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 409 (469)
Q Consensus 334 ~~~~~~l~~~L~~~g--~~--v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~ 409 (469)
+++.+++.+.|++++ .. ......|.++++.++.... .....+.. .+.++||.+.+. +++.+|+++
T Consensus 309 ~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~----~~~~~~~~-~l~~~Gv~v~~~------g~~~lRl~p 377 (406)
T PRK12381 309 KQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQISQ-EAAKAGVMVLIA------GPNVVRFAP 377 (406)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh----hHHHHHHH-HHHHCCcEEeeC------CCCEEEEeC
Confidence 777788888887653 22 1222346888888764210 11223444 455779999754 245899999
Q ss_pred ec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 410 AN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 410 ~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+. ++++++++++++|.+++++..+
T Consensus 378 ~~~~t~~~i~~~~~~l~~~l~~~~~ 402 (406)
T PRK12381 378 ALNISEEEITTGLDRFARACERFVS 402 (406)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHh
Confidence 87 5999999999999999976543
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-20 Score=184.78 Aligned_cols=293 Identities=13% Similarity=0.104 Sum_probs=190.6
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh--------------cCCCCEEEEccCCCcChHHHH
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL--------------AEPGEAFLLPTPYYPGFDRDL 152 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--------------~~~gd~Vl~~~P~y~~~~~~~ 152 (469)
-+.+|++++|+|++ .+..++.+++..|...++.+| .+.+|.|++..-.|......+
T Consensus 148 ~h~~LE~~LA~f~g----------~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~ 217 (476)
T PLN02955 148 YHRLLESSLADLKK----------KEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGV 217 (476)
T ss_pred HHHHHHHHHHHHHC----------CCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHH
Confidence 35789999999985 455666666666777777776 245677888888888887777
Q ss_pred hhhC---CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCCCCHHHHHHHHHHHHhcCeEEE
Q 043923 153 KWRT---GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNIITEKNIHLI 228 (469)
Q Consensus 153 ~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~s~e~l~~l~~~~~~~~~~iI 228 (469)
+... +++++.++.+ |++.|++.++... .+.++ |++.+ -++.|.+.+ +++|.++|++||+++|
T Consensus 218 ~ls~~~~~a~~~~f~HN-------D~~~Le~~L~~~~---~~~~~-Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~Li 283 (476)
T PLN02955 218 RLAERQGNVEVFVYRHC-------DMYHLNSLLSSCK---MKRKV-VVTDSLFSMDGDFAP---MEELSQLRKKYGFLLV 283 (476)
T ss_pred HhccccCCceEEEeCCC-------CHHHHHHHHHhCC---CCceE-EEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEE
Confidence 6531 4677777643 7899999886531 13344 55555 789999999 5557788889999999
Q ss_pred EeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-ccc--ccCc
Q 043923 229 SDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSF--GLVS 305 (469)
Q Consensus 229 ~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~~--~~~s 305 (469)
+||+|+.+.++... ....+...- ..+.+++++||||++|+.| ||+++++. +.+.+... ..+ ++..
T Consensus 284 VDEAH~~Gv~G~~G-~G~~e~~g~-------~~di~ii~~TLsKA~G~~G---Gfi~gs~~-~~~~l~~~~~~~ifStal 351 (476)
T PLN02955 284 IDDAHGTFVCGENG-GGVAEEFNC-------EADVDLCVGTLSKAAGCHG---GFIACSKK-WKQLIQSRGRSFIFSTAI 351 (476)
T ss_pred EcccccCceecCCC-CcHHHHhCC-------CCCCcEEEEeCccchhccC---ceeecHHH-HHHHHHHhCCCCeecccc
Confidence 99999976665432 233332210 2467899999999998777 99998554 55555443 222 2222
Q ss_pred HH-HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHH
Q 043923 306 SQ-TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIV 384 (469)
Q Consensus 306 ~~-~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll 384 (469)
++ ...++.+.+.-. .. -..+++++.++.+++.+. .|+.+ .+.++.+.+... ....++.++|+
T Consensus 352 pp~~aaa~laal~l~---~~-~~~~r~~L~~n~~~fr~~---~G~~~----~sPI~pI~ig~~------~~a~~~~~~L~ 414 (476)
T PLN02955 352 PVPMAAAAYAAVVVA---RK-EKWRRKAIWERVKEFKAL---SGVDI----SSPIISLVVGNQ------EKALKASRYLL 414 (476)
T ss_pred cHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHh---cCCCC----CCCEEEEEeCCH------HHHHHHHHHHH
Confidence 22 222222222211 11 123566777777777763 36553 234555555432 23345566665
Q ss_pred HhCCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 385 YDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~-~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++||.+.+..+... .+...+||+++. +++++|++++++|.++.+....
T Consensus 415 -~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~~ 464 (476)
T PLN02955 415 -KSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDNT 464 (476)
T ss_pred -HCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 66999987665443 234579999977 5999999999999998776655
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=193.79 Aligned_cols=282 Identities=15% Similarity=0.149 Sum_probs=191.7
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCC-CEEEEccCCCcChHHH---HhhhCCCE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----EPG-EAFLLPTPYYPGFDRD---LKWRTGVE 159 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~g-d~Vl~~~P~y~~~~~~---~~~~~g~~ 159 (469)
+.++|+.+|++++ +++++|++|+|+++++..++.++. .+| +.|++....|+.+... ++.. |++
T Consensus 44 ~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~-G~~ 114 (353)
T TIGR03235 44 VERARKQVAEALG--------ADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERN-GFT 114 (353)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhc-CCE
Confidence 4678888888875 578899999999999999988875 355 7788887767655433 3445 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
++.++.+. ++.+|++++++++++ ++++|++++|+||||.+++. ++|.++|+++|+++|+|++++ ++
T Consensus 115 v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~~---~~I~~l~~~~~~~~ivD~a~~---~g 180 (353)
T TIGR03235 115 VTYLPVDE--SGRIDVDELADAIRP------DTLLVSIMHVNNETGSIQPI---REIAEVLEAHEAFFHVDAAQV---VG 180 (353)
T ss_pred EEEEccCC--CCcCCHHHHHHhCCC------CCEEEEEEcccCCceeccCH---HHHHHHHHHcCCEEEEEchhh---cC
Confidence 99999873 456899999988754 78999999999999999985 558888999999999999987 33
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH-HHH---------hcccccCcHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA-ATK---------MSSFGLVSSQTQ 309 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~-~~~---------~~~~~~~s~~~q 309 (469)
... ..+. ..+..+++.|.+|.+|.+| +|+++++++.+... ... ....++.+....
T Consensus 181 ~~~-~~~~------------~~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 245 (353)
T TIGR03235 181 KIT-VDLS------------ADRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLI 245 (353)
T ss_pred Ccc-cccc------------ccCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHH
Confidence 222 1211 2245677789999887555 89998865532111 110 001233444444
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecccccccCChhHHHHHHHHHHHh
Q 043923 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYD 386 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~---g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~ 386 (469)
.++.++++. .....+..++++++..+++++.|.+.|+++..++. ..++.+.+++ . +..+ +...|++
T Consensus 246 ~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~------~~~~-v~~~L~~ 314 (353)
T TIGR03235 246 VGMGEAAEI---ARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG-V------NSEA-LIVNLRA 314 (353)
T ss_pred HHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC-c------CHHH-HHHHHhC
Confidence 444444442 13345677888999999999999888888764322 1234444442 1 1123 4444555
Q ss_pred CCeEEeCCCCCCCCC--CCeEEEEeecCCHHHHHHH
Q 043923 387 VKLNISPGSSCHCTE--PGWFRVCFANMSEDTLKLS 420 (469)
Q Consensus 387 ~GI~v~pg~~f~~~~--~~~iRi~~~~~~~e~i~~~ 420 (469)
||.|.+|..|.... +.++|.+++. +++++..+
T Consensus 315 -~i~v~~g~~~~~~~~~~~~~l~~~g~-~~~~~~~~ 348 (353)
T TIGR03235 315 -DAAVSTGSACSSSKYEPSHVLQAMGL-DTDRARGA 348 (353)
T ss_pred -CeEEEchhhcCCCCCCCCHHHHHcCC-CHHHhCcc
Confidence 99999999987543 4478888884 66555443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=178.49 Aligned_cols=368 Identities=17% Similarity=0.253 Sum_probs=258.9
Q ss_pred ccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccc----cC--hHHHHHHHhcCCCccccccCCcccccccc
Q 043923 7 KATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQ----LS--FDLLESWLDRNPDAAGFKRDGQSIFRELA 80 (469)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (469)
.++....++.+|++.+-..+..++ +| .-|||++|... -| .+.++++-++.... ....
T Consensus 27 ~~s~V~maPpDpILGVTeAfk~D~-----n~-~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~-----------~ldK 89 (427)
T KOG1411|consen 27 WWSHVEMAPPDPILGVTEAFKKDP-----NP-KKINLGVGAYRDDNGKPYVLPSVRKAEQQLASL-----------SLDK 89 (427)
T ss_pred hhhcCCCCCCCCcccHHHHHhcCC-----Cc-ceeeecccceecCCCCeeeeHHHHHHHHHHhhh-----------cccc
Confidence 345566778888887755555544 44 44999998432 22 36666665553221 2334
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCC-CCCCcEEE--eCChHHHHHHHHHHh--cCCCCEEEEccCCCcChHHHHhhh
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVT-FDTSKIVL--TAGATSANETLMFCL--AEPGEAFLLPTPYYPGFDRDLKWR 155 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~-~~~~~i~~--t~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~~~~ 155 (469)
.|-|..|.+++.+..+++.- |.+.+ +....|+. +-++|.|+.+....+ .-++..|.+++|+|.++..++..+
T Consensus 90 EYlpI~Gl~eF~k~sakLa~---G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~a 166 (427)
T KOG1411|consen 90 EYLPITGLAEFNKLSAKLAL---GDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDA 166 (427)
T ss_pred hhccccchHHHHHHHHHHhh---cCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCcccccc
Confidence 79999999999999999863 32222 23345543 455777887665554 347889999999999999999888
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEec--CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN--PSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~--P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay 233 (469)
|+.+..+.........+|.+.+.+.+.+. ....+++.+ .|||||.-.+.|+|++|.++.++.+.+-+.|-+|
T Consensus 167 -g~~~~~yrYyd~~t~gld~~g~ledl~~~-----p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAY 240 (427)
T KOG1411|consen 167 -GLPVKFYRYYDPKTRGLDFKGMLEDLGEA-----PEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAY 240 (427)
T ss_pred -CcceeeeeeccccccccchHHHHHHHhcC-----CCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhh
Confidence 99998877654455568877777666543 222344444 4999999999999999999999999999999999
Q ss_pred cccccCCC--CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEE--EecCHHHHHHH----HH-hccc-cc
Q 043923 234 SGTVFSSP--GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAI--YSNDDMVVAAA----TK-MSSF-GL 303 (469)
Q Consensus 234 ~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~l--i~~~~~~~~~~----~~-~~~~-~~ 303 (469)
.++.-+.. +..++.-+++ ...+++++.|++|.+|+.|-|+|.+ +|.+....... +. .+++ .+
T Consensus 241 QGfaSG~~d~DA~avR~F~~--------~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSn 312 (427)
T KOG1411|consen 241 QGFASGDLDKDAQAVRLFVE--------DGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSN 312 (427)
T ss_pred cccccCCchhhHHHHHHHHH--------cCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccC
Confidence 98533221 2233344444 4467888999999999999999987 56554433322 22 2333 33
Q ss_pred CcHHHHHHHHHHhcCchhhHHHH---HHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHH
Q 043923 304 VSSQTQYLLSALLSDKKFTQNYI---SENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~ 376 (469)
++.....++..+|.+.+.-.+|. +.+.+++...|..|.+.|++.| |+.+..+-|+|.+-.+..
T Consensus 313 PP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p---------- 382 (427)
T KOG1411|consen 313 PPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP---------- 382 (427)
T ss_pred CCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH----------
Confidence 44567778888999876544444 4456788888999999998874 444667778998776653
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+.++.+.+++.|.+. .++ |||++.++...+..+.++|.++.+
T Consensus 383 -eQv~~l~ke~~iYmT--------~dG--RiS~aG~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 383 -EQVDWLTKEYHIYLT--------KDG--RISMAGLSSSNVPYLADAIHAVTK 424 (427)
T ss_pred -HHHHHHHhhheeeec--------cCc--eEeeccccccCCcccchhhHhHhc
Confidence 457888899999875 233 999998888888888888887754
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=189.11 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=184.4
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC---------CC-CEEEEccCCCcChHHHHhhhCC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE---------PG-EAFLLPTPYYPGFDRDLKWRTG 157 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~---------~g-d~Vl~~~P~y~~~~~~~~~~~g 157 (469)
..+|.+.++++.+ .+.+++++++++|+..++.++.. +| +.|++..-.|.+....+... +
T Consensus 85 ~~~l~~~l~~~~~----------~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~-~ 153 (401)
T PRK00854 85 LAPLYEELAALTG----------SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGF-S 153 (401)
T ss_pred HHHHHHHHHhhCC----------CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhc-c
Confidence 4556666666542 46899999999999999988842 23 57777777776643222211 1
Q ss_pred -------------CEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCH-HHHHHHHHHHHhc
Q 043923 158 -------------VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSR-NELNLLVNIITEK 223 (469)
Q Consensus 158 -------------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~-e~l~~l~~~~~~~ 223 (469)
..+..+|. .|++.+++.+.+ ++++|++++|+||+|.+++. +.+++|.++|++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~ 220 (401)
T PRK00854 154 TDPDARGGFGPFTPGFRVVPF-------GDAEALEAAITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN 220 (401)
T ss_pred CCccccccCCCCCCCeEEeCC-------CCHHHHHHHhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 12222221 378889888764 78999999999999999974 4699999999999
Q ss_pred CeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhcc--
Q 043923 224 NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSS-- 300 (469)
Q Consensus 224 ~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~-- 300 (469)
|+++|+||+|.++.+.+..+ . ..... ....+++ ++|+++ .| +|+||++++++. .+.+.....
T Consensus 221 gi~lI~DEv~~g~g~~g~~~-~-~~~~g--------~~~D~~~---~~K~l~-gg~~~ig~v~~~~~~-~~~l~~~~~~~ 285 (401)
T PRK00854 221 NVTLILDEIQTGLGRTGKLL-A-EEHEG--------IEADVTL---IGKALS-GGFYPVSAVLSNSEV-LGVLKPGQHGS 285 (401)
T ss_pred CCEEEEechhhCCCCCchHh-H-HhhcC--------CCCCEEE---eccccc-CCccCeEEEEEcHHH-HhcccCCCCCC
Confidence 99999999998643332211 1 01110 1122222 479997 55 799999996554 343332211
Q ss_pred cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce---ecCCceEEEEEecccccccCChhHHH
Q 043923 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC---LKSNAGLFCWVDMRHLLRSNTFEAEM 377 (469)
Q Consensus 301 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v---~~~~~g~~~~v~~~~~~~~~~~~~~~ 377 (469)
.+..+++.+.++.+.|+... + ....+.++++.+++.+.|++++... ..+.+ .++.+.+.... ....
T Consensus 286 t~~~~~~~~aa~~a~L~~l~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g-~~~~i~~~~~~-----~~~~ 354 (401)
T PRK00854 286 TFGGNPLACAVARAALKVLT---E--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRG-LMLAVELEPEA-----GGAR 354 (401)
T ss_pred CCCcCHHHHHHHHHHHHHHH---H--cCHHHHHHHHHHHHHHHHHhhccCceEEEeccc-eEEEEEEecCc-----hhHH
Confidence 12357788888877775321 1 2245667777788888888765332 23344 44444442110 1234
Q ss_pred HHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 378 ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 378 ~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
++++.|+ ++||.+.+. ..+++|+++.. ++++++++++++|++++.
T Consensus 355 ~~~~~L~-~~GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 355 QYCEALK-ERGLLAKDT------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred HHHHHHH-HCCeEEecC------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 5667766 469999753 24689999864 599999999999998863
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-20 Score=183.70 Aligned_cols=287 Identities=15% Similarity=0.157 Sum_probs=187.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH----HHHhhh
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD----RDLKWR 155 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~ 155 (469)
.+|+.+ ...+|++++|++++ . ... +++++++.|+..++.+++++||+|+++.+.|.... ..+...
T Consensus 58 ~r~~~p-~~~~le~~lA~l~g--------~-~~a-v~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 126 (389)
T PRK05968 58 SRGDNP-TVRAFEEMLAKLEG--------A-EDA-RGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM 126 (389)
T ss_pred cCCCCh-hHHHHHHHHHHHhC--------C-CcE-EEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc
Confidence 344433 36899999999986 1 233 44566678999999889999999999999998643 344455
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
|++++.++.+ |++++++++. ++++|++++|+||+ ++..++++|+++|+++|+++|+|++|+.
T Consensus 127 -G~~v~~vd~~-------d~~~l~~~i~-------~tklV~ie~pt~~~---~~~~dl~~i~~la~~~gi~vivD~a~a~ 188 (389)
T PRK05968 127 -GVEVDYVDGR-------DEEAVAKALP-------GAKLLYLESPTSWV---FELQDVAALAALAKRHGVVTMIDNSWAS 188 (389)
T ss_pred -CceEEEeCCC-------CHHHHHHhcc-------cCCEEEEECCCCCC---CcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 9999888643 6788887762 67899998766665 4557788899999999999999999975
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhc--cc-ccCcHHHHHH
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMS--SF-GLVSSQTQYL 311 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~--~~-~~~s~~~q~~ 311 (469)
..+.. + ..+ +..+++.|+||.++.+| ++.|+++++++.+ +.++... .. ..+++..++.
T Consensus 189 ~~~~~----p-~~~------------g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~-~~l~~~~~~~~g~~~~~~~A~~ 250 (389)
T PRK05968 189 PVFQR----P-ITL------------GVDLVIHSASKYLGGHSDTVAGVVAGSKEHI-ARINAEAYPYLGAKLSPFEAWL 250 (389)
T ss_pred hhccC----c-hhc------------CCcEEEeeccccccCCCCeEEEEEEECHHHH-HHHHHHHHHhCCCCCChHHHHH
Confidence 43221 1 111 33577889999998655 6889988755443 3333221 12 2356666565
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecC-----------CceEEEEEecccccccCChhHHHH
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKS-----------NAGLFCWVDMRHLLRSNTFEAEME 378 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~-----------~~g~~~~v~~~~~~~~~~~~~~~~ 378 (469)
+...|+. +..+.++..++.+.+.+.|+.+ +++ |..| ..|-.+.+.+.+. .+..+
T Consensus 251 ~l~~L~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~------~~~~~ 317 (389)
T PRK05968 251 LLRGLRT-------LPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG------IDVRA 317 (389)
T ss_pred HHcccCc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH------HHHHH
Confidence 5555543 2344444555667788888877 453 3322 1233555666531 12234
Q ss_pred HHHHHHHhCCeEEeCCCCCC--------------C-------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 379 LWKKIVYDVKLNISPGSSCH--------------C-------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~~f~--------------~-------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++..| +..++.+.-|..+. . ..++.+|+|++. |+.+.+++-|+++++.
T Consensus 318 f~~~L-~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~ 386 (389)
T PRK05968 318 FADAL-KLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL---EGTEALWADLEQALAA 386 (389)
T ss_pred HHHhC-CccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence 55444 45576666665544 0 014689999995 5566677777777763
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-20 Score=188.99 Aligned_cols=315 Identities=14% Similarity=0.144 Sum_probs=201.6
Q ss_pred cccC---CCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHH--HH-HhcCCCC----EEEEccCCCcCh
Q 043923 79 LALF---QDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETL--MF-CLAEPGE----AFLLPTPYYPGF 148 (469)
Q Consensus 79 ~~~Y---~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~--~~-~l~~~gd----~Vl~~~P~y~~~ 148 (469)
...| +..+|..+++.++.+++.+.+| ++...+..++|+++.+..+ ++ .+.++|| +|+++.|.|+.+
T Consensus 99 ~tpYq~e~~sqG~lel~~~~~~~la~l~G----~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~ 174 (481)
T PRK04366 99 LHPLQPEETVQGALELMYELQEWLKEITG----MDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTN 174 (481)
T ss_pred CCCCCChhhhhHHHHHHHHHHHHHHHHhC----CCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhH
Confidence 4456 3456889999999999998877 4445666667777665533 22 3456776 999999999999
Q ss_pred HHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEE
Q 043923 149 DRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLI 228 (469)
Q Consensus 149 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI 228 (469)
...+... |++++.+|++ .++.+|++++++++++ ++++|++++|+ |||.+ .+++++|+++|+++|++++
T Consensus 175 ~~~~~~~-G~~vv~v~~~--~~~~~D~e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~i 242 (481)
T PRK04366 175 PASAAMA-GFKVVEIPSN--EDGLVDLEALKAAVGE------DTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLLY 242 (481)
T ss_pred HHHHHHc-CCEEEEeecC--CCCCcCHHHHHhhccc------CCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEEE
Confidence 9888777 9999999986 3567999999998865 78999999998 99954 3578899999999999999
Q ss_pred EeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC----cceEEEEEecCHHHHHHHH------Hh
Q 043923 229 SDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP----GFRVGAIYSNDDMVVAAAT------KM 298 (469)
Q Consensus 229 ~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~----GlRiG~li~~~~~~~~~~~------~~ 298 (469)
+|.++.....+ . .+.. ..+..++++|.+|+||.| |-.+|++.+.+..... +. ..
T Consensus 243 VD~a~~~~~~g-~--~~~~------------~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~-lp~~~v~~~g 306 (481)
T PRK04366 243 YDGANLNAILG-K--ARPG------------DMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPF-LPVPVVEKDG 306 (481)
T ss_pred EEecChhhhcc-c--CCcc------------ccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhh-CCCCeeeccC
Confidence 99998521111 1 1111 235678889999998744 4567888775443322 10 00
Q ss_pred ccc---------------ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE--EE
Q 043923 299 SSF---------------GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--CW 361 (469)
Q Consensus 299 ~~~---------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~--~~ 361 (469)
..+ ++.+.....++..++.... .+-+++..++...+.+++.+.|+++ +++..... ++ +.
T Consensus 307 ~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G--~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~-~~~~~~ 382 (481)
T PRK04366 307 DRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG--AEGLREVSEDAVLNANYLKARLKDI-YDLPYDRP-CMHEFV 382 (481)
T ss_pred CceeecccccccCCCcccccCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCC-eeEEEE
Confidence 000 0011122222222222211 2334455566666778888888876 33322111 11 22
Q ss_pred EecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 362 VDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 362 v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++++.. .... .+..++.++|. ++||.+. +..+.....+.+|++++. .++++|+.+++.|+++.++..+
T Consensus 383 ~~~~~~-~~~g-~~~~~v~~~L~-~~Gi~~~-~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 383 LSGKKL-KETG-VRTLDIAKRLL-DYGFHPP-TIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred EECccc-cccC-CCHHHHHHHHH-HCCccCC-ccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 333211 0000 12335566665 6699865 222222225689999976 4899999999999999876654
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-20 Score=185.40 Aligned_cols=282 Identities=16% Similarity=0.191 Sum_probs=182.4
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~~g~~~~~ 162 (469)
...+|++.+|++++ .+ +.+++++| +.++..++. ++++||.|+++.|.|++... .++.. |++++.
T Consensus 55 ~~~~le~~lA~l~g--------~~-~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~-G~~v~~ 122 (390)
T PRK08064 55 TREALEDIIAELEG--------GT-KGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRF-GIEHTF 122 (390)
T ss_pred hHHHHHHHHHHHhC--------CC-CeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHc-CCEEEE
Confidence 35788999999886 23 45666555 568887775 67899999999999985443 33445 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+ |++++++++++ ++++|++++|+||||.+.+. ++|.++|+++|+++|+|++|...... .
T Consensus 123 v~~~-------d~~~l~~~l~~------~tklV~l~~p~NptG~~~dl---~~I~~la~~~g~~vvvD~a~~~~~~~-~- 184 (390)
T PRK08064 123 VDMT-------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTDI---RGVVKLAKAIGCLTFVDNTFLTPLLQ-K- 184 (390)
T ss_pred ECCC-------CHHHHHHhcCC------CceEEEEECCCCCCcEeccH---HHHHHHHHHcCCEEEEECCCCccccc-C-
Confidence 8753 67888887764 78999999999999999875 45788888999999999999753211 1
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhcccccC--cHHHHHHHHHHhcCc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMSSFGLV--SSQTQYLLSALLSDK 319 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~~~~~~--s~~~q~~~~~~l~~~ 319 (469)
+ ..+ +.++++.|+||.++ .+|+..|++++.++.+.+.+......+.. ++...+. ++...
T Consensus 185 --~-~~~------------g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l---~~~gl 246 (390)
T PRK08064 185 --P-LDL------------GADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL---VLRGL 246 (390)
T ss_pred --c-hhh------------CCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHccc
Confidence 1 112 45688899999985 34566788887666666666555543322 2333332 23332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC-C-ceec----------------CCceEEEEEecccccccCChhHHHHHHH
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKAG-I-SCLK----------------SNAGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~-~v~~----------------~~~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
. .+..+.++..++...+.+.|++++ + .+.- ...|-.+.+.+.+. . .+.
T Consensus 247 ~----tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~------~----~~~ 312 (390)
T PRK08064 247 K----TLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSE------E----AVR 312 (390)
T ss_pred C----cHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCH------H----HHH
Confidence 2 245566666777788888888762 2 1111 11233555666421 1 233
Q ss_pred HHHHhCCe---EEeCCC------------CCCC---------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 382 KIVYDVKL---NISPGS------------SCHC---------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 382 ~ll~~~GI---~v~pg~------------~f~~---------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++...++ .+.-|. ++.. -.++.+|+|++. |+.+.+++.|.+++++.++
T Consensus 313 ~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGl---e~~~dli~dl~~Al~~~~~ 385 (390)
T PRK08064 313 QFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGL---ENVDDLIADFEQALSYVEE 385 (390)
T ss_pred HHHHhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhccc
Confidence 45555566 444441 1111 115689999995 4556666666666665443
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=184.38 Aligned_cols=289 Identities=16% Similarity=0.110 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc---C------C------CCEEEEccCCCcChHHHHhh
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA---E------P------GEAFLLPTPYYPGFDRDLKW 154 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~---~------~------gd~Vl~~~P~y~~~~~~~~~ 154 (469)
+....+|+.+.+. ...+.+++++++++|++.+++... . + ..+|+....+|++....+..
T Consensus 57 ~~~~~la~~l~~~------~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s 130 (382)
T PLN00144 57 IPQVELAKRLVAS------SFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALA 130 (382)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHh
Confidence 3445566665432 124689999999999999988652 1 0 24688888888776543332
Q ss_pred hCCCE------------EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHH--HHHHHHHH
Q 043923 155 RTGVE------------IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNE--LNLLVNII 220 (469)
Q Consensus 155 ~~g~~------------~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~--l~~l~~~~ 220 (469)
..+-. +..+|. .|++.+++.+.. .++++|++.--+|| |.+++.+. +++|.++|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~-----~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~ 197 (382)
T PLN00144 131 LTSKEQYRTPFEPLMPGVTFVEY-------GNLEAARKLIQK-----GKTAAVFVEPVQGE-GGIYPATKEFLQGLRALC 197 (382)
T ss_pred cCCCccccccCCCCCCCeEEeCC-------CCHHHHHHhcCC-----CCeEEEEEccccCC-CCCccCCHHHHHHHHHHH
Confidence 21211 111221 167888877642 26666665533788 55555444 99999999
Q ss_pred HhcCeEEEEeccccccccCCCCccc-hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--
Q 043923 221 TEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-- 297 (469)
Q Consensus 221 ~~~~~~iI~Deay~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-- 297 (469)
++||+++|+||+|.++...+..+.. ...+ .++ +.||||+++ +|+|+||++++++ +.+.+..
T Consensus 198 ~~~g~llI~DEv~tg~gr~g~~~~~~~~~~----------~PD----i~t~sK~l~-~G~pig~v~~~~~-~~~~~~~~~ 261 (382)
T PLN00144 198 DEAGALLVFDEVQCGLGRTGYLWAHEAYGV----------EPD----IMTLAKPLA-GGLPIGAVLVTEK-VASAINPGD 261 (382)
T ss_pred HHcCCEEEEechhhCCCccchHhhhhhcCC----------CCC----EEEeccccc-CCcceEEEEEcHH-HHhccCCCC
Confidence 9999999999999985444332111 1222 223 568999998 9999999999644 4443322
Q ss_pred hcccccCcHHHHHHHH---HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChh
Q 043923 298 MSSFGLVSSQTQYLLS---ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFE 374 (469)
Q Consensus 298 ~~~~~~~s~~~q~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~ 374 (469)
....+..+++.+.++. .+++++++ .++++...+.++ +.+.+.+.+++........|+++|+.+.. .
T Consensus 262 ~~~T~~~~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~---~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--~----- 330 (382)
T PLN00144 262 HGSTFAGGPLVCNAALAVLDKISKPGF-LASVAKKGEYLR---ELLRRKLGGNPHVKEVRGVGLLVGIQLDV--P----- 330 (382)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHH---HHHHHHHhhCCCceeeecCceEEEEEecC--c-----
Confidence 1122336778888777 55555555 555555555553 34555555553211112378999999831 1
Q ss_pred HHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 375 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 375 ~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
...++..++ ++||.+.|+.. .+.+|++++. ++++++++++++|.+++.+.
T Consensus 331 -~~~~~~~~~-~~Gv~i~~~~~-----~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 331 -AGPLVDACR-DSGLLVLTAGK-----GDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred -cHHHHHHHH-HCCeEEeecCC-----CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 124555554 67999998721 3689999998 69999999999999998753
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=183.27 Aligned_cols=216 Identities=18% Similarity=0.173 Sum_probs=152.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH---hhhC
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL---KWRT 156 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~---~~~~ 156 (469)
.+|+.+ ...+|++.+|++++ .+++++++|+++|+..++.+++++||.|+++.|.|..+...+ ...
T Consensus 48 ~r~~np-~~~~lE~~lA~l~g----------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~- 115 (385)
T PRK08574 48 SREENP-TLRPLEEALAKLEG----------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKF- 115 (385)
T ss_pred ECCCCc-cHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhcc-
Confidence 344433 57999999999985 457788899999999999999999999999999999876655 333
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|+++..+. +|++++++++++ .++++|++++|+||||.+++.+ +|+++|+++|+++|+|++|+..
T Consensus 116 g~~v~~~~--------~d~~~l~~~i~~-----~~tklV~ie~p~NPtG~v~dl~---~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 116 GVKVVLAY--------PSTEDIIEAIKE-----GRTKLVFIETMTNPTLKVIDVP---EVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred CcEEEEEC--------CCHHHHHHhcCc-----cCceEEEEECCCCCCCEecCHH---HHHHHHHHcCCEEEEECCCCcc
Confidence 77776543 356888887753 1689999999999999999954 5888899999999999999632
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhcc-cc-cCcHHHHHHHH
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSS-FG-LVSSQTQYLLS 313 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~ 313 (469)
.. .. + + ..+..+++.|+||.++.+|-.+ |++++.++.+.+.+...+. ++ .++++..+.+.
T Consensus 180 ~~-~~---~---l----------~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l 242 (385)
T PRK08574 180 LL-YR---P---L----------RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVL 242 (385)
T ss_pred cc-CC---h---h----------hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 11 11 1 1 1145688999999997666554 7677756655554443332 22 24444444444
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+-++. +..+.++..++...+.+.|+.+
T Consensus 243 ~~l~t-------L~~R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 243 RGLKT-------LEVRFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred cccCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 44433 3344555556777788888766
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=184.87 Aligned_cols=296 Identities=16% Similarity=0.177 Sum_probs=190.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCC
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGV 158 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~ 158 (469)
+.+|+.+ ...+|++++|++.+ .+++++++|+++|+.+++. ++++||.|+++.+.|......+... ..
T Consensus 48 Y~R~~~p-~~~~le~~lA~leg----------~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~-~~ 114 (364)
T PRK07269 48 YTRTKNP-TRAKLEETLAAIES----------ADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQ-EK 114 (364)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHH-Hh
Confidence 4566655 46999999999984 6789999999999999984 5699999999999998765433321 11
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+. .+.. .|..|++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...++
T Consensus 115 ~~-~~~~----~~~~d~~~l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~ 180 (364)
T PRK07269 115 EG-RFHF----TYANTEEELIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY 180 (364)
T ss_pred cC-cEEE----EecCCHHHHHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc
Confidence 00 1111 133578899988865 8999999999999999886 56688889999999999999864322
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSAL 315 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~ 315 (469)
. . + ... ...+++.|++|.++-+| .=.|+++++++.+.+.+...... ..++++..+.+..-
T Consensus 181 ~-~---p-l~~------------gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~ 243 (364)
T PRK07269 181 Q-R---P-IEL------------GADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRG 243 (364)
T ss_pred C-C---c-hhh------------CCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcC
Confidence 1 1 1 112 34588899999996333 23588888666665544433322 23566666666666
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CC-cee-cCCceEEEEEecccccccCChhHHHH---HHHHHHHhCCe
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GI-SCL-KSNAGLFCWVDMRHLLRSNTFEAEME---LWKKIVYDVKL 389 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~-~v~-~~~~g~~~~v~~~~~~~~~~~~~~~~---l~~~ll~~~GI 389 (469)
|+. +..+.++.+++...+.+.|+.+ ++ .|. |+.+|++. +.+........+.+..+ ++..+.....+
T Consensus 244 L~t-------L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~s-f~~~~~~~~~~f~~~l~~~~~~~slG~~~sl 315 (364)
T PRK07269 244 LKT-------LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMIS-FKVADETRIPHILNSLKVFTFAESLGGVESL 315 (364)
T ss_pred CCc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEE-EEECCHHHHHHHHHhCCcceEccCCCCcCeE
Confidence 654 4555666677778888889877 33 454 66666544 44432100000000000 11111122345
Q ss_pred EEeCCCCCCC-----------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 390 NISPGSSCHC-----------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 390 ~v~pg~~f~~-----------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+.|++.++. -.++.+|+|++. |+.+.+++-|+++++
T Consensus 316 ~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~ 363 (364)
T PRK07269 316 ITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE 363 (364)
T ss_pred eeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence 5556544322 125689999995 567777777777764
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-20 Score=182.74 Aligned_cols=174 Identities=22% Similarity=0.352 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS 167 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (469)
.++++++++++.+.++ .+++++|+|+++|+.+++.++ ++|||+|+++.|+|..+...+... |++++.++++.
T Consensus 30 g~~~~~~e~~la~~~g------~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~-G~~~v~vd~d~ 102 (376)
T TIGR02379 30 GPFSRRCETWLENRTG------TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR-GAKIVFVDIRP 102 (376)
T ss_pred cHHHHHHHHHHHHHhC------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEecCC
Confidence 3566666666665533 578999999999999998887 799999999999999988888777 99999999985
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCccch
Q 043923 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFVSI 246 (469)
Q Consensus 168 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~s~ 246 (469)
++|.+|++++++++++ ++++|+ |+||+|...+.+ +|.++|++||++||+|++|+... +++....+
T Consensus 103 -~~~~~d~~~le~~i~~------~tk~Ii---p~~~~G~~~d~~---~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~- 168 (376)
T TIGR02379 103 -DTMNIDETLIESAITH------RTKAIV---PVHYAGVACDMD---TIMALANKHQLFVIEDAAQGVMSTYKGRALGS- 168 (376)
T ss_pred -CcCCCCHHHHHHhcCc------CceEEE---EeCCCCCccCHH---HHHHHHHHCCCEEEEECccccCCccCCcccCC-
Confidence 4588999999998865 788875 678899988754 58888999999999999998532 33322111
Q ss_pred hhhhhccccccCCcCCeEEEEccC--ccccCCCcceEEEEEecCHHHHHHHHHhc
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSL--SKDLGLPGFRVGAIYSNDDMVVAAATKMS 299 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~GlRiG~li~~~~~~~~~~~~~~ 299 (469)
+ . .+.+.|| +|.+. +|.+.|+++++++.+.+.++.++
T Consensus 169 --~------------~-~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~ 207 (376)
T TIGR02379 169 --I------------G-HLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIR 207 (376)
T ss_pred --C------------C-CEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHH
Confidence 1 1 1122232 48886 78889999998777766665544
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-20 Score=185.16 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=131.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~ 154 (469)
..+|+.+ ...+|++.+|++++ .+..++++++++|+..++.+++++||.|+++.|.|++... .+..
T Consensus 51 ysr~~~p-~~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 119 (418)
T TIGR01326 51 YSRLMNP-TTDVLEQRIAALEG----------GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKR 119 (418)
T ss_pred eECCCCh-hHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHH
Confidence 4556544 35899999999985 3467889999999999999999999999999999865433 3444
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |++++.++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+
T Consensus 120 ~-G~~v~~v~~~-------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~ 182 (418)
T TIGR01326 120 L-GIEVRFVDPD-------DPEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFA 182 (418)
T ss_pred c-CcEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCc
Confidence 5 9999988742 77889888865 7899999999999999987 5568888999999999999997
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecC
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSND 288 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~ 288 (469)
...+ ... + ..+.++++.|+||.+|.+|+|+||+++++
T Consensus 183 ~~~~-----~~~--l----------~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 183 TPYL-----CRP--I----------DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred hhhc-----CCc--h----------hcCCeEEEECccccccCCccceEEEEEec
Confidence 3211 111 1 22568899999999998999999999854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=183.75 Aligned_cols=286 Identities=16% Similarity=0.095 Sum_probs=175.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------CCCCEEEEccCCCcChHHHHhhhCCCEEEE---eeccCC--CCcccCH
Q 043923 111 TSKIVLTAGATSANETLMFCLA----------EPGEAFLLPTPYYPGFDRDLKWRTGVEIVP---IQCTSL--NGFQITE 175 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~----------~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~---v~~~~~--~~~~~d~ 175 (469)
.+.+++++++++|+..++..+. ..++.|++.+-.|.+.........+..... .+.... .-.-.|+
T Consensus 88 ~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 167 (400)
T PTZ00125 88 YDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDV 167 (400)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCH
Confidence 3688999999999999998763 134678888887776543322111211100 010000 0001278
Q ss_pred HHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 176 TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMS-RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 176 ~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s-~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
+++++.++. +++++|++..++||||.+++ .+.+++|.++|++||+++|+||+|.++...+..+ . .....
T Consensus 168 ~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~-~-~~~~~--- 237 (400)
T PTZ00125 168 EALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL-A-HDHEG--- 237 (400)
T ss_pred HHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh-H-HHhcC---
Confidence 999988751 27888888888999999886 4559999999999999999999998743333211 1 11111
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKR 332 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 332 (469)
..+.++ ++||.++.+++|+||++++++ +.+.+.... .....+++.+.++.+.|+... .. ...++
T Consensus 238 -----~~pd~~---~~sK~l~~g~~~ig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~--~~---~~~~~ 303 (400)
T PTZ00125 238 -----VKPDIV---LLGKALSGGLYPISAVLANDD-VMLVIKPGEHGSTYGGNPLACAVAVEALEVLK--EE---KLAEN 303 (400)
T ss_pred -----CCCCEE---EEcccccCCCcCcEEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--hc---CHHHH
Confidence 112222 478999843359999999654 444433221 122356777777766553211 00 11222
Q ss_pred HHHHHHHHHHHHHh----cCC-ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEE
Q 043923 333 LKQRHRKLVSGLEK----AGI-SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 407 (469)
Q Consensus 333 l~~~~~~l~~~L~~----~g~-~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi 407 (469)
.++..+++.+.|++ .++ ....+ .|.++|+.++... . ....+++..++ ++||.+.|+. .+++|+
T Consensus 304 ~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~---~-~~~~~~~~~l~-~~Gv~v~~~~------~~~lRi 371 (400)
T PTZ00125 304 AQRLGEVFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSD---G-VNAWDLCLKLK-ENGLLAKPTH------DNIIRF 371 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCc---c-hHHHHHHHHHH-HCCeEEeecC------CCEEEE
Confidence 33333444444443 233 22233 5678888776311 0 22345667766 6699998762 468999
Q ss_pred Eeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 408 CFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 408 ~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
++.. .+++++++++++|.+++++..
T Consensus 372 ~~~~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 372 APPLVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred ECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 9754 599999999999999998763
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=180.20 Aligned_cols=295 Identities=14% Similarity=0.120 Sum_probs=177.1
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
.-+.++++.+|++++ . ++.+++++|+ .++..++..+.++||.|++..-.|......+... ....+.++.
T Consensus 56 ~~~~~~e~~la~~~~--------~-~~~l~~~sG~-~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~-~~~~~~~~~ 124 (370)
T PRK05937 56 SLLDDLEHKIAHFHG--------A-PEAFIVPSGY-MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVI-SGWHQSFRH 124 (370)
T ss_pred HHHHHHHHHHHHHhC--------C-CeEEEECChH-HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHc-CCceEEecC
Confidence 346889999999986 2 3446666666 4555566666678888888777887777776654 333333432
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
.|++++++.+++.....+++.+|++++++|++|.+.|.+ +|.++|+++|+++++||+|+...++... ..
T Consensus 125 -------~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~---eI~~l~~~~~~~livDea~~~G~~g~~g-~g 193 (370)
T PRK05937 125 -------NDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLE---QIIALSKKYHAHLIVDEAHAMGIFGDDG-KG 193 (370)
T ss_pred -------CCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHH---HHHHHHHHcCCEEEEECCccccccCCCC-Cc
Confidence 478999998875322222456777899999999999955 5888888999999999999843333211 11
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc---ccCcHHHHHHHHHHhcCchhh
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~ 322 (469)
...... ..+..+++.|+||++|..|. .+++.++...........+ ...+++...++.++++- +
T Consensus 194 ~~~~~~--------~~~~~~~~~tlsK~~g~~G~---~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~---l 259 (370)
T PRK05937 194 FCHSLG--------YENFYAVLVTYSKALGSMGA---ALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDF---L 259 (370)
T ss_pred hHHhhC--------CCCCcEEEEechhhhhcCce---EEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHH---H
Confidence 111100 11223567899999997673 3445333222222222221 12344444333333321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
.+..+..++++++.++++.+.|...+. +....+.++.. ...++ .+.|.++||.+.... ....
T Consensus 260 ~~~~~~~~~~l~~l~~~l~~~l~~~~~-------~~~~~i~~~~~-------~~~~~-~~~L~~~gi~v~~~~---~~~~ 321 (370)
T PRK05937 260 SQEGELARKQLFRLKEYFAQKFSSAAP-------GCVQPIFLPGI-------SEQEL-YSKLVETGIRVGVVC---FPTG 321 (370)
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCCCC-------CCEEEEEeCCh-------hHHHH-HHHHHHCCeeEEeeC---CCCC
Confidence 111223455666666777766643211 11111233321 12234 444567799887322 1234
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 403 GWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 403 ~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
+++|++++. .+++|++++++.|++++++..+.
T Consensus 322 ~~iRis~~~~~t~edid~l~~~L~~~~~~~~~~ 354 (370)
T PRK05937 322 PFLRVNLHAFNTEDEVDILVSVLATYLEKYQKN 354 (370)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 689999976 49999999999999999988773
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=179.95 Aligned_cols=215 Identities=16% Similarity=0.178 Sum_probs=156.7
Q ss_pred cCCCC--CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hh
Q 043923 81 LFQDY--HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KW 154 (469)
Q Consensus 81 ~Y~~~--~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~ 154 (469)
.|... ++...|+++||++.+ .+++++++|+++|+..++.+++++||+|++++|.|.++...+ ..
T Consensus 54 ~Y~r~~npt~~~Le~~iA~le~----------~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~ 123 (394)
T PRK09028 54 FYGRRGTPTHFAFQAAIVELEG----------GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKG 123 (394)
T ss_pred eecCCCCchHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhh
Confidence 35542 345799999998864 357899999999999999999999999999999998876533 33
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |+++..++.+ +.+.+++++++ ++++|++++|+||||.+. ++++|+++|+++|+++|+|++|+
T Consensus 124 ~-Gi~v~~v~~~-------~~e~l~~~l~~------~TklV~lespsNPtg~v~---dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 124 F-GIETTYYDPM-------IGEGIRELIRP------NTKVLFLESPGSITMEVQ---DVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred c-ceEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcHH---HHHHHHHHHHHcCCEEEEECCcc
Confidence 4 8888776532 44677777754 899999999999998775 57779999999999999999997
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEecCHHHHHHHHHh-cccc-cCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKM-SSFG-LVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~~~~~~~~~~~~~-~~~~-~~s~~~q~~ 311 (469)
..+ ... + . ..+..+++.|.+|.+ |..++..|+++.+ +.+.+.+... ...+ .+++...+.
T Consensus 187 ~p~-~~~---P-l------------~~GaDivv~S~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p~~a~l 248 (394)
T PRK09028 187 SPI-NSR---P-F------------EMGVDISIQAATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSPDDVYL 248 (394)
T ss_pred ccc-cCC---c-c------------ccCceEEEEeCCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 421 111 1 1 225679999999999 5556778877654 4333323222 2222 366776666
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.+-|+. +.-+.++..++...+.+.|+++
T Consensus 249 ~~rgl~T-------L~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 249 AMRGLRT-------LGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred HHcccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 6666555 4556667777888899999987
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-20 Score=182.99 Aligned_cols=280 Identities=16% Similarity=0.164 Sum_probs=188.4
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCCEEEEccCCCcChHHH---HhhhCCCEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL----AEPGEAFLLPTPYYPGFDRD---LKWRTGVEI 160 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~~~~~---~~~~~g~~~ 160 (469)
+.++|+.++++++ .++++|++|+|+++++..++..+ .++||.|++....|+.+... +... |+++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~-g~~v 115 (364)
T PLN02651 45 VEKARAQVAALIG--------ADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQE-GFEV 115 (364)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhc-CCEE
Confidence 4566777777775 56889999999999988776654 47899999998777665433 3344 8999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+.++.+. ++.+|++++++++++ +++++++++++||||.+.+.+ +|.++|+++|+++++|.+++ .+.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~v~~~~n~tG~~~~l~---~I~~~~~~~g~~~~vD~a~~---~g~ 181 (364)
T PLN02651 116 TYLPVKS--DGLVDLDELAAAIRP------DTALVSVMAVNNEIGVIQPVE---EIGELCREKKVLFHTDAAQA---VGK 181 (364)
T ss_pred EEEccCC--CCcCCHHHHHHhcCC------CcEEEEEECCCCCceecccHH---HHHHHHHHcCCEEEEEcchh---hCC
Confidence 9998863 456899999999865 789999999999999999855 58889999999999999997 332
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--------hcccccCcHHHHHHH
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--------MSSFGLVSSQTQYLL 312 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--------~~~~~~~s~~~q~~~ 312 (469)
.+ ..+. ..+..+++.|..|.+| ...+|+++..++........ ....++.+.....++
T Consensus 182 ~~-~~~~------------~~~~D~~~~s~hK~~g--p~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l 246 (364)
T PLN02651 182 IP-VDVD------------DLGVDLMSISGHKIYG--PKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGL 246 (364)
T ss_pred cc-cCcc------------cCCCCEEEechhhhCC--CCceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHH
Confidence 21 1211 2255778889999644 34588988765432111000 011234555555555
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-c-CCceecCC-----ceEEEEEecccccccCChhHHHHHHHHHHH
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-A-GISCLKSN-----AGLFCWVDMRHLLRSNTFEAEMELWKKIVY 385 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-g~~v~~~~-----~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~ 385 (469)
.++|+-. .+..+..+++.++..+++.+.|++ + |+++..+. ....+.+.+++. +..++...| .
T Consensus 247 ~~al~~~---~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L-~ 315 (364)
T PLN02651 247 GAACELA---MKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV-------EGESLLMGL-K 315 (364)
T ss_pred HHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC-------CHHHHHHHh-C
Confidence 5554322 223456667778888888888875 3 77776541 122455555521 122445544 3
Q ss_pred hCCeEEeCCCCCCCC-----------------CCCeEEEEeecC-CHHHHH
Q 043923 386 DVKLNISPGSSCHCT-----------------EPGWFRVCFANM-SEDTLK 418 (469)
Q Consensus 386 ~~GI~v~pg~~f~~~-----------------~~~~iRi~~~~~-~~e~i~ 418 (469)
+ |.++.|..+... ..+.+|+|++.. |++|++
T Consensus 316 ~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 316 E--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred C--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 3 999988876443 136899999874 777764
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=182.55 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=126.1
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~~g~~~~~ 162 (469)
....|.+.+|++.+ .+..++++|+++|+..++.+++++||+|+++.+.|++... .+... |++++.
T Consensus 65 ~~~~Le~~lA~leg----------~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~-Gv~v~~ 133 (431)
T PRK08248 65 TTDVFEKRIAALEG----------GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKL-GITVKF 133 (431)
T ss_pred hHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhC-CEEEEE
Confidence 35788888888875 4567889999999999999999999999999999876433 34445 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.. |++++++++++ ++++|++++|+||||.+++.+ +|+++|+++|+++|+|++|+.. + .
T Consensus 134 vd~~-------d~e~l~~ai~~------~tklV~l~sp~NPtG~v~di~---~I~~la~~~gi~vIvD~t~a~~-~---~ 193 (431)
T PRK08248 134 VDPS-------DPENFEAAITD------KTKALFAETIGNPKGDVLDIE---AVAAIAHEHGIPLIVDNTFASP-Y---L 193 (431)
T ss_pred ECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEeCCCCcc-c---c
Confidence 8752 77888888864 789999999999999999955 5888899999999999998621 1 1
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEec
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSN 287 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~ 287 (469)
..+ + ..+..+++.|++|.+|.+|.++|++++.
T Consensus 194 ~~p---l----------~~gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 194 LRP---I----------EHGADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred CCh---h----------HcCCCEEEEcCccccCCCCCceEEEEEe
Confidence 111 1 1256788899999999999999998773
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=174.70 Aligned_cols=302 Identities=17% Similarity=0.210 Sum_probs=216.4
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh--c----CCCCEEEEccCCCcChHHHHhhh--CCC
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL--A----EPGEAFLLPTPYYPGFDRDLKWR--TGV 158 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~----~~gd~Vl~~~P~y~~~~~~~~~~--~g~ 158 (469)
-.++.|+.||+.++ +++++|++|+|+||+.++++... . ..|..|++..-.|+.....++.. .|.
T Consensus 45 ~ve~AR~~iA~llg--------a~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~ 116 (386)
T COG1104 45 AVEEAREQIAKLLG--------ADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGF 116 (386)
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCC
Confidence 35677888998886 68899999999999999998872 2 24789999999999888776653 499
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+|-++|.+.++ .+|+++|+++|++ ++.+|.+..-||-||.+.|.++ |.++|+++++++++|.+.+ +
T Consensus 117 ~Vtyl~V~~~G--~v~~e~L~~al~~------~T~LVSim~aNnE~G~IQpI~e---i~~i~k~~~i~fHvDAvQa---~ 182 (386)
T COG1104 117 EVTYLPVDSNG--LVDLEQLEEALRP------DTILVSIMHANNETGTIQPIAE---IGEICKERGILFHVDAVQA---V 182 (386)
T ss_pred eEEEeCCCCCC--eEcHHHHHHhcCC------CceEEEEEecccCeeecccHHH---HHHHHHHcCCeEEEehhhh---c
Confidence 99999998643 6899999999986 8889999999999999999665 8899999999999999997 5
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH-HHH-----HhcccccCcHHHHHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA-AAT-----KMSSFGLVSSQTQYLL 312 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~-~~~-----~~~~~~~~s~~~q~~~ 312 (469)
+.-+ ..+..+ ...+...|-+|..|..| +|+++..+..-.. .+. +-.-.++.+.+...+.
T Consensus 183 Gkip-i~~~~~------------~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~ 247 (386)
T COG1104 183 GKIP-IDLEEL------------GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGF 247 (386)
T ss_pred Ccee-cccccc------------CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHH
Confidence 5432 222221 34455668899999777 8888764322111 110 0011233455555554
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCceecCC---ceEEEEEecccccccCChhHHHHHHHHHHHhC
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV 387 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~ 387 (469)
..+++.. .+.++....++...|++|.+.|.+. ++.+.+.. -...+.+.++... .+.....|..+
T Consensus 248 ~~A~~~a---~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~--------gE~ll~~L~~~ 316 (386)
T COG1104 248 GKAAEIA---VEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE--------GESLLLALDLA 316 (386)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc--------HHHHHHhcccc
Confidence 4444432 3445667777888889999999875 33333221 2234555565421 13445566778
Q ss_pred CeEEeCCCCCCCCC-----------------CCeEEEEeecC-CHHHHHHHHHHHHHHHHhhccccc
Q 043923 388 KLNISPGSSCHCTE-----------------PGWFRVCFANM-SEDTLKLSMQRLKAFVDSITTTLH 436 (469)
Q Consensus 388 GI~v~pg~~f~~~~-----------------~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~~~~~~ 436 (469)
||.+..|+.|.... .+.+|+|++.. +++|++.+++.|+++++++++.+.
T Consensus 317 gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~~~ 383 (386)
T COG1104 317 GIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRELSP 383 (386)
T ss_pred CeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999887521 35799999984 899999999999999999887443
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-19 Score=177.78 Aligned_cols=281 Identities=15% Similarity=0.176 Sum_probs=186.5
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~v 163 (469)
..+|++.++++++ .++++++++++.|+..++. ++++||.|+++.+.|.++... +... |++++.+
T Consensus 49 ~~~le~~la~l~g----------~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~-G~~v~~v 116 (378)
T TIGR01329 49 RTALESLLAKLDK----------ADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRS-GVVVVHV 116 (378)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHc-CcEEEEe
Confidence 4667777777664 2566777777789988776 779999999999999877543 3334 9999988
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+.+ |++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... .
T Consensus 117 d~~-------d~~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~----~ 176 (378)
T TIGR01329 117 DTT-------DLDKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLL----C 176 (378)
T ss_pred CCC-------CHHHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccccc----C
Confidence 753 67889888864 8999999999999999997 66689999999999999999853211 1
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCC-CcceEEEEEecCHHHHHHHHHhcc-cc-cCcHHHHHHHHHHhcCch
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL-PGFRVGAIYSNDDMVVAAATKMSS-FG-LVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~-~GlRiG~li~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~~~l~~~~ 320 (469)
.++ .+ +..+++.|++|.++- .+++.|+++++++.+.+.+..... .+ ..++...+.+..-++.
T Consensus 177 ~~l-~~------------g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t-- 241 (378)
T TIGR01329 177 NPL-EL------------GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT-- 241 (378)
T ss_pred Chh-hc------------CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC--
Confidence 111 11 345888999998853 357899999866666554444333 22 2444444333333332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ceec----------------CCceEEEEEecccccccCChhHHHHHHHH
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA-GI-SCLK----------------SNAGLFCWVDMRHLLRSNTFEAEMELWKK 382 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~-~v~~----------------~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ 382 (469)
+..+.++..++...+.+.|+++ .+ .|.- ...|..+.+.+.+ .....+++..
T Consensus 242 -----l~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~------~~~~~~~~~~ 310 (378)
T TIGR01329 242 -----LAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS------VALSKRLVEA 310 (378)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC------HHHHHHHHHh
Confidence 3445555566667777777765 22 1111 1123455566632 1223345555
Q ss_pred HHHhCCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 383 IVYDVKLNISPGSSCHC---------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~---------------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
| +..+|.++.|..... -.++.+|+|++. |+.+.+++.|++++++
T Consensus 311 L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 311 T-KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFVT 375 (378)
T ss_pred C-cCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence 4 667777777654321 014689999995 6677888888888874
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=178.71 Aligned_cols=216 Identities=19% Similarity=0.244 Sum_probs=149.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----Hhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~ 154 (469)
+.+|+.+ ...+|++.+|++.+ . ...+++.+| +.++..++ .++++||+|+++.|.|.+.... +..
T Consensus 44 y~r~~~p-~~~~Le~~lA~l~g--------~-~~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~ 111 (377)
T PRK07671 44 YSRTGNP-TRAALEELIAVLEG--------G-HAGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNR 111 (377)
T ss_pred cCCCCCh-HHHHHHHHHHHHhC--------C-CceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhc
Confidence 3445544 35889999999885 2 344665555 56777665 5779999999999999854332 333
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |++++.++. .|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.
T Consensus 112 ~-G~~v~~v~~-------~d~~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 112 F-GIEHTFVDT-------SNLEEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred C-CeEEEEECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCC
Confidence 4 899888864 278889988865 8899999999999999877 5557888889999999999997
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~ 311 (469)
...+. . + ..+ +..+++.|+||.+|-++ .-.|++++.++.+.+.+...+.. ...++...+.
T Consensus 175 ~~~~~-~---p-~~~------------g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l 237 (377)
T PRK07671 175 TPYWQ-S---P-ISL------------GADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWL 237 (377)
T ss_pred ccccC-C---h-hhh------------CCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 53232 1 1 111 34688999999997443 45677777666665555544443 2244544444
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.+-++. +..+.++..++...+.+.|+++
T Consensus 238 ~~~~l~t-------l~~R~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 238 LLRGLKT-------LGIRMEEHETNSRAIAEFLNNH 266 (377)
T ss_pred HHcCcCh-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 3333222 4556677778888899999876
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=180.21 Aligned_cols=288 Identities=18% Similarity=0.168 Sum_probs=192.8
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~ 162 (469)
....|++.+|++.+ .+..+.+++++.|+.+++.+++++||.|+++.++|.+.... +... |+++..
T Consensus 62 tv~~lE~~la~leg----------~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~-Gi~v~~ 130 (432)
T PRK06702 62 TLAAFEQKLAELEG----------GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKL-GIDVTF 130 (432)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHC-CCEEEE
Confidence 35888999999875 34578899999999999999999999999999999866554 4555 999988
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
+.. .+|+++++++|++ ++++|++.+|+||++.+.+ +++|+++|+++|+++|+|++|...++
T Consensus 131 vd~------~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~---- 191 (432)
T PRK06702 131 FNP------NLTADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL---- 191 (432)
T ss_pred ECC------CCCHHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh----
Confidence 853 3588999999876 8999999999999999998 56688899999999999999852111
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCcc-----ccCCCcceE-----EEEEecCHHHH--------------------
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSK-----DLGLPGFRV-----GAIYSNDDMVV-------------------- 292 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK-----~~g~~GlRi-----G~li~~~~~~~-------------------- 292 (469)
.... ..+-.|++.|+|| ..+++|+++ +|..++...+.
T Consensus 192 -~~pl------------~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 258 (432)
T PRK06702 192 -CQAF------------EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAY 258 (432)
T ss_pred -CChh------------hcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhH
Confidence 1111 2255689999999 777888887 56554322211
Q ss_pred ---HHHHHhcccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecC------------
Q 043923 293 ---AAATKMSSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKS------------ 354 (469)
Q Consensus 293 ---~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~------------ 354 (469)
........++ .++++..+.+...|+.. ..+.++..++...+.+.|+++ .+. |..|
T Consensus 259 ~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl-------~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~ 331 (432)
T PRK06702 259 IVKARVQLLRDYGNCMSPFNAYISNIGLETL-------HLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQ 331 (432)
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHH
Confidence 1111222333 46777777777777653 334444567888888999877 332 1111
Q ss_pred ----C-ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----------CCCCCCC-----------CCCCeEEEE
Q 043923 355 ----N-AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS----------PGSSCHC-----------TEPGWFRVC 408 (469)
Q Consensus 355 ----~-~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~----------pg~~f~~-----------~~~~~iRi~ 408 (469)
. .|-.+.+.+++. .+....++..+ +-..+.+. |.+.-+. -.++.||+|
T Consensus 332 ~~~~~g~gg~~sf~l~~~-----~~~~~~f~~~l-~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlS 405 (432)
T PRK06702 332 KYLKKGASGVLTFGIKGG-----LEAAKEFIANV-KLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLS 405 (432)
T ss_pred HhCcCCCceEEEEEecCC-----HHHHHHHHHhC-ccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEE
Confidence 1 233556666521 11122222222 11111111 2211100 124689999
Q ss_pred eecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 409 FANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 409 ~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++. |+.+.+++-|.++++.-++
T Consensus 406 vGl---Ed~eDLi~Dl~~Al~~~~~ 427 (432)
T PRK06702 406 VGI---EDVSDIIADLEAALVGGKQ 427 (432)
T ss_pred ecc---CCHHHHHHHHHHHHhcCcc
Confidence 995 6788889999999986655
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-19 Score=174.87 Aligned_cols=283 Identities=15% Similarity=0.118 Sum_probs=184.5
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~v 163 (469)
...|++++|++.+ .+++++++|+++|+..++.+++++||.|++++|.|.+.... +... |+++..+
T Consensus 52 ~~~lE~~lA~l~g----------~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~-gi~v~~~ 120 (377)
T TIGR01324 52 HFALQDAMCELEG----------GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM-GVDITYY 120 (377)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhc-CcEEEEE
Confidence 4799999999875 46789999999999999999999999999999999876543 2344 8887766
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+.. +.+.+++++++ ++++|++++|+||+|...+ +++|+++|+++|+++|+|++|+...+. .
T Consensus 121 d~~-------~~e~l~~~i~~------~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~-~-- 181 (377)
T TIGR01324 121 DPL-------IGEDIATLIQP------NTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLF-K-- 181 (377)
T ss_pred CCC-------CHHHHHHhcCC------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCcccccc-C--
Confidence 432 22677777654 8999999999999987754 777999999999999999999843221 1
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhcccc-cCcHHHHHHHHHHhcCchh
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMSSFG-LVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~ 321 (469)
+ + ..+..++++|++|.+| .+++..|+++++++.+.........++ ..++...+.+.+.++.
T Consensus 182 -p---l----------~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t--- 244 (377)
T TIGR01324 182 -P---L----------EHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRT--- 244 (377)
T ss_pred -c---c----------ccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh---
Confidence 1 1 2256789999999996 345788998886554433332223333 2455444444444432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ceecC----------------CceEEEEEecccccccCChhHHHHHHHHH
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKA-GI-SCLKS----------------NAGLFCWVDMRHLLRSNTFEAEMELWKKI 383 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~-g~-~v~~~----------------~~g~~~~v~~~~~~~~~~~~~~~~l~~~l 383 (469)
+..+.++..++...+.+.|+++ .+ +|.-| ..|-.+.+.+++. ..+....++..
T Consensus 245 ----l~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~----~~~~~~~~~~~- 315 (377)
T TIGR01324 245 ----LGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL----TQKQVHAFLDH- 315 (377)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC----CHHHHHHHHHh-
Confidence 4445666666777788888876 22 22211 1233455666421 11222233333
Q ss_pred HHhCCeEEeCCCCCCC-----------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 384 VYDVKLNISPGSSCHC-----------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 384 l~~~GI~v~pg~~f~~-----------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
++-.++.+.-|..... ..++.+|+|++. |+.+.+++.|.++++
T Consensus 316 l~~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl---E~~~dl~~dl~~al~ 375 (377)
T TIGR01324 316 LQLFGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL---ENVDDLKADLKAGFE 375 (377)
T ss_pred CCcceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC---CCHHHHHHHHHHHHh
Confidence 3333444433332110 013579999995 566777777777775
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=177.79 Aligned_cols=292 Identities=11% Similarity=0.048 Sum_probs=171.8
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccC--C------
Q 043923 112 SKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTS--L------ 168 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~--~------ 168 (469)
+.+++++++++|++.+++... .....|+....+|++....+....+- .+..+|... .
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK 174 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 689999999999999987653 23356888888887764332221111 112222210 0
Q ss_pred -CCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 169 -NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMS-RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 169 -~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s-~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
..+.-+++.+++.+... ....++.+|++.--..-+|..++ .+.+++|.++|++||+++|+||+|.++.+.+. ..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~ 252 (420)
T TIGR00700 175 QLSTDGELAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFAC 252 (420)
T ss_pred chhHHHHHHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHH
Confidence 00111134555544210 11236676666533556788665 44599999999999999999999998644442 1121
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHHHHHHhc---Cchh
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYLLSALLS---DKKF 321 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~---~~~~ 321 (469)
... . ..+. +.++||+++ +|+|+||++++++ +.+.+.. ....+..+++++.++.+.|+ +..+
T Consensus 253 ~~~-~--------~~pD---i~~lsK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~ 318 (420)
T TIGR00700 253 EHE-G--------PEPD---LITTAKSLA-DGLPLSGVTGRAE-IMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGL 318 (420)
T ss_pred hhc-C--------CCCC---EEEeecccc-CCcceEEEEecHH-HHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH
Confidence 111 1 1122 346999999 9999999999644 4444321 11223367888888766553 3333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC-CceecCCceEEEEEeccccccc-CChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRS-NTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~~~~~-~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
.+.+.+..++++++ +.+...+++ +....+. |.++|+.+...... ........+...+ .++||.+.|+..|+
T Consensus 319 -~~~~~~~g~~l~~~---L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~p~~~f~- 391 (420)
T TIGR00700 319 -IERARQIGRLVTDR---LTTLKAVDPRIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAA-HAAGLLLLTCGMFG- 391 (420)
T ss_pred -HHHHHHHHHHHHHH---HHHHHhhCCCEEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHH-HHCCeEEeccCCCC-
Confidence 33344444443333 332223333 2233344 68888877421100 0111223344444 46799999987763
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 400 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 400 ~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
+++|++++. ++++++++++++|.+++.
T Consensus 392 ---~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 392 ---NIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred ---CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 589999876 599999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=177.08 Aligned_cols=163 Identities=19% Similarity=0.226 Sum_probs=125.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhh---CC
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWR---TG 157 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~---~g 157 (469)
+++.+ ...+|++++|++.+ .+..++++++++|+..++.+++++||.|+++.+.|......+... .|
T Consensus 54 r~~~p-t~~~Le~~lA~l~g----------~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~g 122 (425)
T PRK06084 54 RIMNP-TNDVLEQRVAALEG----------GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIG 122 (425)
T ss_pred CCCCc-hHHHHHHHHHHHhC----------CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccce
Confidence 34433 35789999999875 335567788889999999999999999999999998655544321 26
Q ss_pred CEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 158 VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 158 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
+++..++. .|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+...
T Consensus 123 i~v~~~d~-------~d~e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~ 186 (425)
T PRK06084 123 IETRFAAH-------DDIAALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPV 186 (425)
T ss_pred eEEEEECC-------CCHHHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccc
Confidence 66665543 378999998875 7899999999999999998 4668888999999999999997432
Q ss_pred cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEec
Q 043923 238 FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSN 287 (469)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~ 287 (469)
. . .... .+..+++.|++|.+|.+|.++|.+++.
T Consensus 187 ~-~----~p~~------------~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 187 L-C----RPFE------------HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred c-C----Chhh------------cCCCEEEECchhcccccccceeEEEEe
Confidence 1 1 1111 245588999999998899999987764
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=172.56 Aligned_cols=323 Identities=16% Similarity=0.161 Sum_probs=218.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH-HhhhCCCE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD-LKWRTGVE 159 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~-~~~~~g~~ 159 (469)
.|.....+.+|+++++++++ .+.++.+++++.|+.++....++|||.| +.++|...... +... |..
T Consensus 66 ~yag~~s~~~lE~~va~~~G----------~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~-Gav 132 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELYG----------FKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKN-GAT 132 (450)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhC-CeE
Confidence 58888889999999999986 5679999999999998877778999976 66777544444 5555 887
Q ss_pred EEEeecc--------CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCC-CCCCCCHHHHHHHHHHHHhcCeEEEEe
Q 043923 160 IVPIQCT--------SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP-LGTTMSRNELNLLVNIITEKNIHLISD 230 (469)
Q Consensus 160 ~~~v~~~--------~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NP-tG~~~s~e~l~~l~~~~~~~~~~iI~D 230 (469)
++.++.+ ....+.+|+++++++|++. ...++++|.+.+++|- .|.++|.++++++.++|++||+.||+|
T Consensus 133 ~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~--~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~D 210 (450)
T TIGR02618 133 FVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV--GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYD 210 (450)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhccc--cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 7777543 1345678999999999742 1124567888999885 589999999999999999999999999
Q ss_pred ccccc--ccc-----CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC-cceEEEEEecCHHHHHHHHHhc---
Q 043923 231 EIYSG--TVF-----SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDDMVVAAATKMS--- 299 (469)
Q Consensus 231 eay~~--~~~-----~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~-GlRiG~li~~~~~~~~~~~~~~--- 299 (469)
.+... -+| .+....++.++..++ ...-..+..|..|.++.+ | |+++..++.+.+..+...
T Consensus 211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~------~~~aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~ 281 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYEDKSIAEILKEM------MSYADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVF 281 (450)
T ss_pred ccchhhChhhhhcccccccCCCHHHHHHHH------hccCcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhc
Confidence 99862 111 011123453433322 112234677899988766 4 666656777665554432
Q ss_pred ----ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccc---cccCC
Q 043923 300 ----SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL---LRSNT 372 (469)
Q Consensus 300 ----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~---~~~~~ 372 (469)
+++..+.....+++..|.+.-. ..+.+.+. ...++|.+.|.+.|+++..|.+|.-++++.... +....
T Consensus 282 eG~~tyGgla~r~~~ala~gL~e~~~-~~y~~~r~----~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~ 356 (450)
T TIGR02618 282 EGMPSYGGLAGRDMEAMAIGIREAVD-YEYIEHRV----KQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQ 356 (450)
T ss_pred CCccccCchhhhhHHHHHHHHHHhhh-HHHHHHHH----HHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhh
Confidence 2222333333333333433211 12222222 235778899999999998888889999988754 22222
Q ss_pred hhHHHHHHHHHHHhCCeEEe-CCCC-CCCC-------C--CCeEEEEeec-C-CHHHHHHHHHHHHHHHHhhcc
Q 043923 373 FEAEMELWKKIVYDVKLNIS-PGSS-CHCT-------E--PGWFRVCFAN-M-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 373 ~~~~~~l~~~ll~~~GI~v~-pg~~-f~~~-------~--~~~iRi~~~~-~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.....++.+|..+.||.-. -|+. ++.+ . -..+|+++.. + |.+.++...++|..+.++...
T Consensus 357 -~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 357 -FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred -ChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 3456788888889999543 2332 1111 0 2479999976 3 999999999999998876554
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-18 Score=173.57 Aligned_cols=330 Identities=17% Similarity=0.123 Sum_probs=198.1
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ .+.+. .|.+.+++.+..+.. ......|+ .....+|.+.++++. ..
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~---------~~~~~~~~-~~~~~~la~~L~~~~----------~~ 92 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKL---------WHIGNGYT-NEPVLRLAKKLVDAT----------FA 92 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhc---------ccccCccC-CHHHHHHHHHHHhhC----------CC
Confidence 44568999775 44443 466666665531110 00001121 111234444444432 24
Q ss_pred CcEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCCCc
Q 043923 112 SKIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLNGF 171 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~~ 171 (469)
+.+++++++++|+..+++... ...+.|+..+-.|++.........+.. +..+|.
T Consensus 93 ~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 166 (397)
T TIGR03246 93 DKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY------ 166 (397)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC------
Confidence 689999999999999998762 123567777777766533222211321 122222
Q ss_pred ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhh
Q 043923 172 QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250 (469)
Q Consensus 172 ~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~ 250 (469)
.|++.+++.+.+ ++++|++..++++.|... +.+.+++|.++|++||+++|+||+|.++...+.. .....+
T Consensus 167 -~d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~-~a~~~~- 237 (397)
T TIGR03246 167 -NDLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGEL-YAYMHY- 237 (397)
T ss_pred -CCHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccc-hhhhhc-
Confidence 278888888753 677777774455556543 8999999999999999999999999774322221 111111
Q ss_pred hccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHH
Q 043923 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISE 328 (469)
Q Consensus 251 ~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 328 (469)
. .... + .++||.+| .|+++||+++++ .+.+.+..... ....+++++.++.+.|+... ...
T Consensus 238 g--------v~pD-i--~t~~K~lg-gG~pigav~~~~-~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~-----~~~ 299 (397)
T TIGR03246 238 G--------VTPD-I--LTSAKALG-GGFPIGAMLTTT-EIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN-----TPE 299 (397)
T ss_pred C--------CCCC-E--EEeehhhh-CCcceeEEEEcH-HHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh-----hcc
Confidence 0 1122 2 28999998 899999999954 45554433211 12256677777767665321 133
Q ss_pred HHHHHHHHHHHHHHHHHhcC--Cc---eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 329 NKKRLKQRHRKLVSGLEKAG--IS---CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 329 ~~~~l~~~~~~l~~~L~~~g--~~---v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
..+.++++.+++.+.|++++ .. ...+. |.++.+.+..... .....++..++ ++||.+.+. +++
T Consensus 300 l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~----~~~~~~~~~l~-~~Gv~~~~~------g~~ 367 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEKINARYNVFSEIRGK-GLLIGAVLTEAYQ----GKAKQFVNAAA-EEGVIALIA------GPN 367 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEeeecC-ceEEEEEEcCchh----hHHHHHHHHHH-HCCeEEeec------CCC
Confidence 45667777777888777653 11 12223 4555565542110 12345666655 569998763 246
Q ss_pred eEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 404 WFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 404 ~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
++|++++. ++++++++++++|.+++++
T Consensus 368 ~lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 368 VVRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 89997765 5999999999999998865
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=179.69 Aligned_cols=167 Identities=18% Similarity=0.241 Sum_probs=131.1
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
-+.++++.+|++++ ..+.+++++|+++++..++.+++++||.|+++.|+|..+...+... |++++.++.+
T Consensus 60 ~i~~~~~~~A~~~g---------a~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~-g~~~~~v~~~ 129 (294)
T cd00615 60 PIKEAQELAARAFG---------AKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLS-GAVPVYLKPE 129 (294)
T ss_pred HHHHHHHHHHHHhC---------CCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHC-CCEEEEecCc
Confidence 47889999999986 2345556999999999999999999999999999999988888877 9999998876
Q ss_pred CCCCc----ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc-ccCCC
Q 043923 167 SLNGF----QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT-VFSSP 241 (469)
Q Consensus 167 ~~~~~----~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~-~~~~~ 241 (469)
.+.+| .+|++++++++++ .++++++++++| ||+|.+++ +++|+++|+++|+++|+||+|+.. .|.+.
T Consensus 130 ~~~~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~ 201 (294)
T cd00615 130 RNPYYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPI 201 (294)
T ss_pred cCcccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcc
Confidence 44433 6899999998864 237899999999 79999998 556899999999999999999743 23222
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEE
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIY 285 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li 285 (469)
...+. . ..+.++++.|++|++ +|++.|+++
T Consensus 202 ~~~~~--~----------~~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 202 LPSSA--A----------MAGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred cCcch--h----------hcCCcEEEEchhccc--chHhHHHHH
Confidence 11111 1 236789999999985 777765554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-19 Score=175.68 Aligned_cols=285 Identities=15% Similarity=0.187 Sum_probs=187.2
Q ss_pred CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEe
Q 043923 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (469)
Q Consensus 85 ~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v 163 (469)
.....+++++++++++ .+++++++|+++|+..++.++ .++||+|+++.++|..+...+... |++++.+
T Consensus 17 ~~~~~~~~~~la~~~~----------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~ 85 (352)
T cd00616 17 GPKVREFEKAFAEYLG----------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLL-GATPVFV 85 (352)
T ss_pred CHHHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHc-CCeEEEE
Confidence 3457899999999985 346788889999999999998 589999999999999988888877 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCC
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPG 242 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~ 242 (469)
+++. .++.+|++.+++.+++ ++++|+++ ||+|...+. ++|.++|+++|+++|+|++++... +.+.
T Consensus 86 ~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~~---~~i~~l~~~~~i~li~D~a~~~g~~~~~~- 151 (352)
T cd00616 86 DIDP-DTYNIDPELIEAAITP------RTKAIIPV---HLYGNPADM---DAIMAIAKRHGLPVIEDAAQALGATYKGR- 151 (352)
T ss_pred ecCC-CcCCcCHHHHHHhcCc------CCeEEEEE---CCCCCcCCH---HHHHHHHHHcCCeEEEECCCCCCCeECCE-
Confidence 9874 3678899999988754 78888876 478988774 557888889999999999997321 1111
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCc--cccCCCcceEEEEEecCHHHHHHHHHhcccc-----------------c
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLS--KDLGLPGFRVGAIYSNDDMVVAAATKMSSFG-----------------L 303 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~GlRiG~li~~~~~~~~~~~~~~~~~-----------------~ 303 (469)
. + . . ...+.+.|++ |.++ +-+.|+++++++.+.+.+......+ .
T Consensus 152 --~---~-~--------~-~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (352)
T cd00616 152 --K---V-G--------T-FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYR 214 (352)
T ss_pred --E---c-c--------c-CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccC
Confidence 0 0 0 1 1224555665 9884 3356888887655554443322111 0
Q ss_pred CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC-----ceEEEEEecccccccCChhHHH
Q 043923 304 VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN-----AGLFCWVDMRHLLRSNTFEAEM 377 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~-----~g~~~~v~~~~~~~~~~~~~~~ 377 (469)
.+.+...++... ...+++..++.+++.+++.+.|.++ |+++..+. ....+.+.++.. .. .+..
T Consensus 215 ~~~~~aa~~~~~-------l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~ 283 (352)
T cd00616 215 LSEIQAAIGLAQ-------LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE-AG---ESRD 283 (352)
T ss_pred cCHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc-CC---CCHH
Confidence 112211111111 1224555566677788888888886 77765332 123444445421 00 1223
Q ss_pred HHHHHHHHhCCeEEeCCCCCCCC----------------C-------CCeEEEEeec-CCHHHHHHHHHHHH
Q 043923 378 ELWKKIVYDVKLNISPGSSCHCT----------------E-------PGWFRVCFAN-MSEDTLKLSMQRLK 425 (469)
Q Consensus 378 ~l~~~ll~~~GI~v~pg~~f~~~----------------~-------~~~iRi~~~~-~~~e~i~~~l~~L~ 425 (469)
++.+.| +++||.+... +.+. . .+.+|+++.. .++++++.++++|+
T Consensus 284 ~v~~~L-~~~gI~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 284 ELIEAL-KEAGIETRVH--YPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HHHHHH-HHCCCCeeee--cCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 455554 5669966521 1110 0 2579999976 59999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=173.87 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=148.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH---HHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR---DLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~---~~~~~~g~~~~~v~ 164 (469)
...|++++|++.+ .+..+++++++.|+..++.+++++||.|+++++.|+.+.. .+... |++++.++
T Consensus 49 ~~~lE~~la~leg----------~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~-G~~v~~v~ 117 (397)
T PRK05939 49 TAALEAKITKMEG----------GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGL-GVEVTMVD 117 (397)
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhc-CCEEEEEC
Confidence 3488999998875 2234555556899999999999999999999999986543 34455 99999887
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.. |++++++++++ ++++|++++|+||||.+. ++++|+++|+++|+++|+|++|+.... .
T Consensus 118 ~~-------d~e~l~~~l~~------~tklV~vesp~NptG~v~---dl~~I~~la~~~gi~livD~t~a~~~~-----~ 176 (397)
T PRK05939 118 AT-------DVQNVAAAIRP------NTRMVFVETIANPGTQVA---DLAGIGALCRERGLLYVVDNTMTSPWL-----F 176 (397)
T ss_pred CC-------CHHHHHHhCCC------CCeEEEEECCCCCCCCHH---hHHHHHHHHHHcCCEEEEECCcccccc-----c
Confidence 53 67889988864 899999999999999985 477799999999999999999863210 0
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH----------------------HHHHHHH-hccc
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM----------------------VVAAATK-MSSF 301 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~----------------------~~~~~~~-~~~~ 301 (469)
... ..+..+++.|+||.++..|.++|++++++.. +.+.... ....
T Consensus 177 ~~~------------~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (397)
T PRK05939 177 RPK------------DVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDM 244 (397)
T ss_pred Ccc------------ccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhc
Confidence 100 2256789999999999889999998874221 1111111 1122
Q ss_pred c-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 302 G-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 302 ~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+ .+++...+.+.+-++. +..+.++..++...+.+.|+.+
T Consensus 245 G~~~~p~~a~l~~rgl~t-------l~~R~~~~~~na~~la~~L~~~ 284 (397)
T PRK05939 245 GATLSSEAAHRIAIGAET-------LALRVDRSCSNALALAQFLEAH 284 (397)
T ss_pred CCCCCHHHHHHHHcCcCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 2 2445444444444433 3445555666778888999877
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=175.23 Aligned_cols=218 Identities=14% Similarity=0.175 Sum_probs=150.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----Hhhh
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWR 155 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~ 155 (469)
..|... |. +.++++.+.+.+..+ .+..++++|+++++.+++ .++++||.|+++.|.|..+... +...
T Consensus 125 ~~Y~r~-gn-pt~~aLE~~lA~leg------~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~ 195 (464)
T PLN02509 125 YDYTRS-GN-PTRDALESLLAKLDK------ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRS 195 (464)
T ss_pred CccCCC-CC-HHHHHHHHHHHHHhC------CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHC
Confidence 346654 53 357777777765533 566777788889987665 5789999999999999987633 3344
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
|++++.++. .|++++++++++ ++++|++++|+||||.+ .++++|+++|++||+++|+|++|+.
T Consensus 196 -G~~v~~vd~-------~d~e~l~~ai~~------~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~ 258 (464)
T PLN02509 196 -GVVVKRVNT-------TNLDEVAAAIGP------QTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMS 258 (464)
T ss_pred -CeEEEEeCC-------CCHHHHHHhCCc------CCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence 998888763 267888888754 78999999999999996 4577799999999999999999874
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhccc-c-cCcHHHHHHH
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSF-G-LVSSQTQYLL 312 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~~-~-~~s~~~q~~~ 312 (469)
.++. . . + ..+..+++.|++|.++-+| +-.|++++.++.+.+.+..++.. + ..++...+++
T Consensus 259 ~~~~-~---p---l----------~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~ 321 (464)
T PLN02509 259 PVLS-R---P---L----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLC 321 (464)
T ss_pred cccC-C---h---h----------hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 3221 1 1 1 1145688899999987433 44677776555544433322222 1 2344443333
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
.+-|+ .+..+.++..++...+.+.|+++
T Consensus 322 lr~L~-------tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 322 LRGIK-------TMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred Hhhhh-------hHHHHHHHHHHHHHHHHHHHhcC
Confidence 33332 24566677777888889999876
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-18 Score=171.81 Aligned_cols=342 Identities=13% Similarity=0.055 Sum_probs=203.2
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHH----HHHHHHHhHcCCCCCCCCCcE
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKK----ALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~----aia~~l~~~~~~~~~~~~~~i 114 (469)
..|+|-..+|.+.|.....+............ .....|+..+.+.+|.+ .++++++ .+..
T Consensus 29 ~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~------~gsr~~~G~~~~~~lE~~~~~~la~l~g----------~~~a 92 (416)
T PRK13034 29 DHLELIASENFTSPAVMEAQGSVLTNKYAEGY------PGKRYYGGCEFVDEVEALAIERAKQLFG----------CDYA 92 (416)
T ss_pred cCeeecccccCCCHHHHHHhcchhhcCCCCCC------CCCcccCCChHHHHHHHHHHHHHHHHhC----------CCce
Confidence 55888888888755443333222111100000 11122322344677777 7777775 2344
Q ss_pred -EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh-HHHHhhh-CCCEE--EEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 115 -VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF-DRDLKWR-TGVEI--VPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 115 -~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~-~~~~~~~-~g~~~--~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+.+++++.|+..++.+++++||.|+++...|.+. ...+... .+... +.++++. ..+.+|++++++.+...
T Consensus 93 lv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~~~le~~l~~~---- 167 (416)
T PRK13034 93 NVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDR-LTGLIDYDEVEELAKEH---- 167 (416)
T ss_pred EEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccccc-ccCCcCHHHHHHHHhhc----
Confidence 4568889999999999999999999999988762 2222110 02222 2344432 24568999999887542
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++++|++..+. +|...+ +.+|.++|++||+++|+|++++-..+...... .. .....++++|
T Consensus 168 -~~klVi~~~~~--~g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~--~~-----------~~~~Di~~~s 228 (416)
T PRK13034 168 -KPKLIIAGFSA--YPRELD---FARFREIADEVGALLMVDMAHIAGLVAAGEHP--NP-----------FPHAHVVTTT 228 (416)
T ss_pred -CCeEEEECCCc--cccccC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCC--CC-----------CCCceEEEEe
Confidence 57887776654 466666 55577789999999999999974333221111 00 1135688899
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhcccc--c-CcHHHHHHHH-HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG--L-VSSQTQYLLS-ALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~--~-~s~~~q~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
++|+++.+. -|++++.++.+...++.....+ . ..++...++. ++++.. .....+.++++.++.++|.+.|.
T Consensus 229 ~~K~l~g~~--GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~---~~~~~~~~~~l~~~a~~l~~~L~ 303 (416)
T PRK13034 229 THKTLRGPR--GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEAL---QPEFKTYAKQVIANAQALAEVLK 303 (416)
T ss_pred CcccCCCCC--CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHh---ChhHHHHHHHHHHHHHHHHHHHH
Confidence 999994232 3788876666655544432221 1 1122222222 222211 11123456788888999999999
Q ss_pred hcCCceecC-CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCC----CCCCCCeEEEEeec-----CCHH
Q 043923 346 KAGISCLKS-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC----HCTEPGWFRVCFAN-----MSED 415 (469)
Q Consensus 346 ~~g~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f----~~~~~~~iRi~~~~-----~~~e 415 (469)
+.|+++..+ ..+..+++.+..... ....+.+.|++.||.+.+-... .+..+..+|++++. ++++
T Consensus 304 ~~G~~~~~~~~~t~i~~v~~~~~~~------~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~ 377 (416)
T PRK13034 304 ERGYDLVSGGTDNHLLLVDLRPKGL------SGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEA 377 (416)
T ss_pred HcCCEeccCCCCCcEEEEEcCCCCC------CHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHH
Confidence 889987642 234666677653211 1133445566789999742110 11125579999754 3689
Q ss_pred HHHHHHHHHHHHHHhh
Q 043923 416 TLKLSMQRLKAFVDSI 431 (469)
Q Consensus 416 ~i~~~l~~L~~~l~~~ 431 (469)
+++++++.|++++...
T Consensus 378 di~~l~~~l~~~~~~~ 393 (416)
T PRK13034 378 EFREIANWILDVLDDL 393 (416)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998844
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=174.77 Aligned_cols=170 Identities=17% Similarity=0.251 Sum_probs=130.4
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
...+|++++|++++ .++++.++|+++|+.+++.++ +++||+|+++.|+|..+...+... |++++.+++
T Consensus 34 ~~~~le~~la~~~g----------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~-G~~~v~vd~ 102 (379)
T PRK11658 34 KNQALEQAFCQLTG----------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLL-GATPVMVDV 102 (379)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHc-CCEEEEEec
Confidence 46999999999986 246788999999999999999 799999999999999998888776 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc-cccCCCCcc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG-TVFSSPGFV 244 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~-~~~~~~~~~ 244 (469)
+. +++.+|++++++++++ ++++|+ |+||+|...+ +++|.++|+++|++||+|++|+. ..+.+..
T Consensus 103 ~~-~~~~~d~~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~-- 167 (379)
T PRK11658 103 DR-DTLMVTPEAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH-- 167 (379)
T ss_pred CC-CcCCcCHHHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCee--
Confidence 75 4578899999998865 788776 6678999877 45588899999999999999972 2222211
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~ 297 (469)
+ . ..+.. +.||++.-.+++.+.|+++.+++.+.+.++.
T Consensus 168 -~----g--------~~g~~--~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~ 205 (379)
T PRK11658 168 -I----G--------ARGTA--IFSFHAIKNITCAEGGLVVTDDDELADRLRS 205 (379)
T ss_pred -c----C--------CCCCE--EEeCCCCCcCcccCceEEEECCHHHHHHHHH
Confidence 1 1 11223 4466544444666789998876666555444
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=171.80 Aligned_cols=216 Identities=17% Similarity=0.227 Sum_probs=144.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----Hhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~ 154 (469)
+.+|+.+ ....|++.+|++.+ ....+++++| +.|+.+++ .++++||+|++++|.|.+.... +..
T Consensus 44 y~r~~~p-~~~~Le~~la~l~g---------~~~al~~~SG-~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~ 111 (380)
T PRK06176 44 YSRSGNP-TRFALEELIADLEG---------GVKGFAFASG-LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVK 111 (380)
T ss_pred ccCCCCh-hHHHHHHHHHHHhC---------CCCEEEECCH-HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHh
Confidence 3445544 35889999999875 2334555555 56888766 5679999999999999765432 334
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |+++..++. .|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+
T Consensus 112 ~-gi~v~~vd~-------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 112 N-GLSCTIIDT-------SDLSQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred c-CeEEEEcCC-------CCHHHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCcc
Confidence 4 888887764 278888888764 7899999999999999998 4458888999999999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhccc-c-cCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSF-G-LVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~~-~-~~s~~~q~~ 311 (469)
..++. .+ + ..+..+++.|++|.++.+| .-.|++++.++.+.+.+...+.. + ..++...+.
T Consensus 175 ~~~~~-~p---~-------------~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l 237 (380)
T PRK06176 175 TPYYQ-NP---L-------------LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWL 237 (380)
T ss_pred ccccC-Cc---c-------------ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 54322 11 1 1144588899999997555 45677777555555444433333 2 234444444
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+..-+.. +..+.++..++...+.+.|+++
T Consensus 238 ~~~gl~t-------l~~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 238 LQRGIKT-------LGLRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred HHhccCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 4333322 2334444555666777777765
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-18 Score=154.99 Aligned_cols=318 Identities=15% Similarity=0.231 Sum_probs=226.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE--EeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV--LTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~--~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~ 154 (469)
-+.|-|..|.+.++++.++.+-..... .+..+.++ -+-|++.|+.+....|. -+..+|.+.+|+|..+..+++.
T Consensus 67 NHEYLpi~Gl~~F~~~A~el~lg~~s~--a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~ 144 (410)
T KOG1412|consen 67 NHEYLPILGLPTFTKAATELLLGADSP--AIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEK 144 (410)
T ss_pred cchhccccCchhhhhhhHHHhcCCCch--hhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHH
Confidence 356888999999999999886322111 12334433 46677888887766552 2356799999999999999998
Q ss_pred hCC-CEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCCCCHHHHHHHHHHHHhcCeEEEEecc
Q 043923 155 RTG-VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNIITEKNIHLISDEI 232 (469)
Q Consensus 155 ~~g-~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Dea 232 (469)
. | ..+...++=..+.-.+|++.+...|+.. |.-..+++... |||||.-.+.|+|.+|++..++.+.+.+.|-+
T Consensus 145 a-Gf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A----Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiA 219 (410)
T KOG1412|consen 145 A-GFTTVATYPYWDAENKCVDLEGFLSDLESA----PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIA 219 (410)
T ss_pred c-CCceeeeeeeecCCCceecHHHHHHHHhhC----CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehh
Confidence 8 8 4566666633345568888888887753 22233444444 99999999999999999999999999999999
Q ss_pred ccccccCCCC--ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEE--EecCHHHH-HHHHHh-----cccc
Q 043923 233 YSGTVFSSPG--FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAI--YSNDDMVV-AAATKM-----SSFG 302 (469)
Q Consensus 233 y~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~l--i~~~~~~~-~~~~~~-----~~~~ 302 (469)
|.++.-++.. ...+..++. ....++++.||+|.||+.+-|+|.+ +..++... ....++ ..+.
T Consensus 220 YQGfASGD~~~DawAiR~fV~--------~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~S 291 (410)
T KOG1412|consen 220 YQGFASGDLDADAWAIRYFVE--------QGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWS 291 (410)
T ss_pred hcccccCCccccHHHHHHHHh--------cCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccC
Confidence 9985333322 122333333 2245889999999999999999987 34444332 222222 2333
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHH---HHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYIS---ENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEA 375 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~ 375 (469)
.++.....++..+|..+++.++|.+ .+..++++.|..|+..|..++ |.-+..+.|+|-+-.+..
T Consensus 292 NPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp--------- 362 (410)
T KOG1412|consen 292 NPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTP--------- 362 (410)
T ss_pred CCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCH---------
Confidence 4555677788899998776555543 345678888899999888874 444567778887766553
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 376 EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 376 ~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
..++.|.+++.|.+.+ +| ||++++++...++...++|.+.++...
T Consensus 363 --~qV~~li~~h~vyLl~--------~G--RInisGLN~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 363 --AQVDHLIENHKVYLLS--------DG--RINISGLNMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred --HHHHHHHHhceEEEec--------CC--cEeeeccccccHHHHHHHHHHHHHhhc
Confidence 3467888899998874 33 999999999999999999999887654
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=174.21 Aligned_cols=170 Identities=19% Similarity=0.332 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS 167 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (469)
.++++++++++.+.++ .+++++++|+++|+.+++.++ +++||+|+++.|+|..+...+... |++++.+++++
T Consensus 30 ~~~~~~~e~~la~~~g------~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~-G~~~v~~d~d~ 102 (375)
T PRK11706 30 GGFTRRCQQWLEQRFG------SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR-GAKIVFVDIRP 102 (375)
T ss_pred CHHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHc-CCEEEEEecCC
Confidence 4566777776665543 478999999999999887765 689999999999999999888877 99999999885
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCccch
Q 043923 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFVSI 246 (469)
Q Consensus 168 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~s~ 246 (469)
++|.+|++++++++++ ++++|+++ |++|...+ +++|.++|++||++||+|++|+... +++.. +
T Consensus 103 -~~~~~d~~~le~~i~~------~tk~i~~~---~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~---~ 166 (375)
T PRK11706 103 -DTMNIDETLIEAAITP------KTRAIVPV---HYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKGRA---L 166 (375)
T ss_pred -CcCCcCHHHHHHhcCC------CCeEEEEe---CCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCCee---e
Confidence 4588999999998864 78888866 46998876 5568888899999999999998542 22211 1
Q ss_pred hhhhhccccccCCcCCeEEEEccCc--cccCCCcceEEEEEecCHHHHHHHH
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLS--KDLGLPGFRVGAIYSNDDMVVAAAT 296 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~GlRiG~li~~~~~~~~~~~ 296 (469)
..+ . .+.+.||+ |.++ +|.+.+++.. ++.+.+.++
T Consensus 167 g~~------------~-~~~~~Sf~~~K~l~-~g~gG~~~~~-~~~~~~~~~ 203 (375)
T PRK11706 167 GTI------------G-HIGCFSFHETKNYT-AGEGGALLIN-DPALIERAE 203 (375)
T ss_pred ecC------------c-CEEEEeCCCCcccc-ccCCeEEEEC-CHHHHHHHH
Confidence 111 1 12233443 9997 6888667665 455544433
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=169.43 Aligned_cols=293 Identities=12% Similarity=0.107 Sum_probs=174.3
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCCCCccc---
Q 043923 112 SKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSLNGFQI--- 173 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~--- 173 (469)
+.+++++++++|+..+++... ....+|+....+|++....+....|. .++.+|...+.. .+
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~-~~~~~ 180 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLH-GISTQ 180 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccc-cccHH
Confidence 589999999999999988753 22357888888887764322111121 122233221110 11
Q ss_pred -CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhh
Q 043923 174 -TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251 (469)
Q Consensus 174 -d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~ 251 (469)
+++.+++.+++. ....++.+|++.-.++|+|..+ |.+.+++|.++|++||+++|+||++.++.+.+.. .....+ .
T Consensus 181 ~~~~~l~~~~~~~-~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~-~ 257 (421)
T PRK09792 181 DSLDAIERLFKSD-IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHY-A 257 (421)
T ss_pred HHHHHHHHHHHhc-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhc-C
Confidence 235666655421 0123677766664489999865 8999999999999999999999999986444432 222222 1
Q ss_pred ccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
..++ +.+|||++| +|+|+||++++++ +.+.+... ......+++.+.++.+.++-.+. .+++++.
T Consensus 258 -------~~pD----i~t~gK~l~-~G~pigav~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~~~~~~ 323 (421)
T PRK09792 258 -------DKPD----LMTMAKSLA-GGMPLSGVVGNAN-IMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK-ESLCERA 323 (421)
T ss_pred -------CCCc----EEEeehhhc-CCCceEEEEEcHH-HHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHH
Confidence 0222 468999998 9999999999544 44433211 11223677777755555432211 1223333
Q ss_pred HHHHHHHHHHHHHHH-HhcCCceecCCc-eEEEEEeccccccc-CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEE
Q 043923 330 KKRLKQRHRKLVSGL-EKAGISCLKSNA-GLFCWVDMRHLLRS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 406 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L-~~~g~~v~~~~~-g~~~~v~~~~~~~~-~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iR 406 (469)
+ .+.++.....+.| ++++. +....+ |+++|+.+++.... ........++..++ ++||.+.+... ..+.+|
T Consensus 324 ~-~~g~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~g~----~~~~ir 396 (421)
T PRK09792 324 N-QLGQRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRAL-AQGLLLLTCGA----YGNVIR 396 (421)
T ss_pred H-HHHHHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccCCcchHHHHHHHHHHH-HCCcEEeecCC----CCCEEE
Confidence 3 2222222222222 23343 333445 89999999743111 01122334555555 56999964221 246899
Q ss_pred EEeec-CCHHHHHHHHHHHHHHHH
Q 043923 407 VCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 407 i~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
+.++. ++++++++++++|.++++
T Consensus 397 l~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 397 FLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHh
Confidence 99887 699999999999999875
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-18 Score=172.71 Aligned_cols=291 Identities=16% Similarity=0.126 Sum_probs=184.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----------CCCCEEEEccCCCcCh-HHHHhhhC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----------EPGEAFLLPTPYYPGF-DRDLKWRT 156 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----------~~gd~Vl~~~P~y~~~-~~~~~~~~ 156 (469)
+.+|.+.++++++ .+.+++++++++|+..++..+. ...+.|+...-.|.+. ...+...
T Consensus 81 ~~~l~~~l~~~~~----------~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~- 149 (401)
T TIGR01885 81 FGEFAEYVTKLFG----------YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMS- 149 (401)
T ss_pred HHHHHHHHHhhcC----------CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCc-
Confidence 4566666666542 3688999999999999998752 2246777777777653 3333322
Q ss_pred CC------------EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCH-HHHHHHHHHHHhc
Q 043923 157 GV------------EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSR-NELNLLVNIITEK 223 (469)
Q Consensus 157 g~------------~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~-e~l~~l~~~~~~~ 223 (469)
+- .++.++. .|++.+++.+++. +.++.+|++..+++++|...+. +.+++|.++|++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~ 219 (401)
T TIGR01885 150 TDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH 219 (401)
T ss_pred CCcccccccCCCCCCceEeCC-------CCHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 21 1223332 1678888888642 2367777777779999998864 4699999999999
Q ss_pred CeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-hcc-c
Q 043923 224 NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-MSS-F 301 (469)
Q Consensus 224 ~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-~~~-~ 301 (469)
|+++|+||+|.++.+.+.. .+. +... ..+.++ ++||.++..++|+|++++++ .+.+.+.. ... .
T Consensus 220 ~~lli~DEv~~g~g~~G~~-~~~-~~~~--------~~~di~---~~gK~l~~g~~~ig~v~~~~-~i~~~~~~~~~~~t 285 (401)
T TIGR01885 220 NVLLIADEIQTGLGRTGKL-LCV-DHEN--------VKPDIV---LLGKALSGGVYPVSAVLADD-DVMLTIKPGEHGST 285 (401)
T ss_pred CCEEEEechhhCCCccchh-hHH-hhcC--------CCCCEE---EeeccccCCCCCcEEEEEcH-HHHhhccCCCCCCC
Confidence 9999999999874333321 111 1111 112333 47899986669999999954 44444432 111 1
Q ss_pred ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce---ecCCceEEEEEecccccccCChhHHHH
Q 043923 302 GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC---LKSNAGLFCWVDMRHLLRSNTFEAEME 378 (469)
Q Consensus 302 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v---~~~~~g~~~~v~~~~~~~~~~~~~~~~ 378 (469)
...+++.+.++.++|+... .. ...++.++..+++.+.|++++..+ ..+.+ .+..+.++.... .....+
T Consensus 286 ~~~~p~~~~aa~a~L~~i~--~~---~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g-~~~~i~~~~~~~---~~~~~~ 356 (401)
T TIGR01885 286 YGGNPLACAVAVAALEVLE--EE---KLAENAEKLGEIFRDQLKKLPKPIITEVRGRG-LLNAIVIDESKT---GRTAWD 356 (401)
T ss_pred CCCCHHHHHHHHHHHHHHH--hc---cHHHHHHHHHHHHHHHHHhccCCceeEEeecC-eeEEEEeccCcc---hhHHHH
Confidence 2346777777777765322 11 233455556688888888874332 23344 454454542110 012345
Q ss_pred HHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 379 LWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
++.++. ++||.+.|+. ++.+|+++.. ++++++++++++|+++++
T Consensus 357 l~~~l~-~~Gv~v~~~~------~~~lRi~p~l~~t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 357 LCLKLK-EKGLLAKPTH------GNIIRLAPPLVITEEQLDEGLEIIKKVID 401 (401)
T ss_pred HHHHHH-hCCEEEEecC------CCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence 666665 6699998752 4689999864 599999999999998763
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=170.52 Aligned_cols=357 Identities=12% Similarity=0.099 Sum_probs=198.6
Q ss_pred CCCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 34 VQNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 34 ~~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
......+||+..+ ...+. .|.+.+++++..+ ............+....+|+.+.+... -
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~~~~~~~~~~la~~L~~~~p----~ 112 (451)
T PRK06918 50 DVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVD-------------QYIHTGFNVMMYEPYIELAEKLAALAP----G 112 (451)
T ss_pred eCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHH-------------hccCccccccccHHHHHHHHHHHHhCC----C
Confidence 3344567888765 23343 4666666665311 111111111113445556666654321 1
Q ss_pred C-CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCC--CCc
Q 043923 110 D-TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSL--NGF 171 (469)
Q Consensus 110 ~-~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~--~~~ 171 (469)
. .+.+++++++++|++.+++... .....|+....+|++....+....+. .+..+|.... ...
T Consensus 113 ~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (451)
T PRK06918 113 SFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPE 192 (451)
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccc
Confidence 1 1589999999999999988753 23356888888887765333221121 1222222100 000
Q ss_pred ccC--------HHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 172 QIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 172 ~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
... ++.+++.+.... ...++.+ ++..|.... |.++ +.+.+++|.++|++||+++|+||+|.++.+.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAa-vi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~ 270 (451)
T PRK06918 193 GLTEEQYDDFMIEEFKNFFISEV-APETIAA-VVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK 270 (451)
T ss_pred cCchHHHHHHHHHHHHHHHHhhc-CCCceEE-EEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc
Confidence 111 112333221100 1124544 555675544 6645 455599999999999999999999998655443
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhc--
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLS-- 317 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~-- 317 (469)
+.+...+ . ..+. +.|+||+++ +|+|+||++++++ +.+.+.... ..+..+++.+.++.++|+
T Consensus 271 -~~a~~~~-~--------v~pD---i~t~sK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i 335 (451)
T PRK06918 271 -YFAIEHF-D--------VVPD---LITVSKSLG-AGVPISGVIGRKE-IMDESAPGELGGTYAGSPLGCAAALAVLDII 335 (451)
T ss_pred -eehhHhc-C--------CCCC---EEeeehhhc-CCCccEEEEEcHH-HHhccCCCCcCcCCCcCHHHHHHHHHHHHHH
Confidence 2232222 1 1122 348999998 9999999999544 444333221 123367788888666554
Q ss_pred -CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceecCCceEEEEEeccccc-ccCChhHHHHHHHHHHHhCCeEEeCC
Q 043923 318 -DKKFTQNYISENKKRLKQRHRKLVSGLEKAGI-SCLKSNAGLFCWVDMRHLL-RSNTFEAEMELWKKIVYDVKLNISPG 394 (469)
Q Consensus 318 -~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~-~v~~~~~g~~~~v~~~~~~-~~~~~~~~~~l~~~ll~~~GI~v~pg 394 (469)
+..+ .++++...+.+.++.+.+.+ ++++ ....+.|+++.|....+.. ..........+...+ .++||.+.|+
T Consensus 336 ~~~~~-~~~~~~~g~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~Gvlv~~~ 410 (451)
T PRK06918 336 EKENL-NDRAIELGKVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEA-NKRGLLLLSA 410 (451)
T ss_pred HHCCH-HHHHHHHHHHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHH-HHCCeEEeec
Confidence 3333 44444444444444333322 2322 2234567666665542210 001112223344444 5679999998
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 395 SSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 395 ~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..|+ +++|++++. ++++++++++++|.+++++...
T Consensus 411 ~~~~----~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 411 GTYG----NVIRVLMPLVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred CCCC----CEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 6653 589999976 6999999999999999987643
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-18 Score=170.33 Aligned_cols=340 Identities=15% Similarity=0.092 Sum_probs=202.5
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ ...+. .+.+.+++.+..+ ....++... ..+....+++.+.+... ..
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~~-~~~~~~~la~~L~~~~~-----~~ 98 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAG-------------KLWHTSNVF-YSAPPLKLAEELVTASR-----FA 98 (408)
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHH-------------hcccccccc-CCHHHHHHHHHHHhhCC-----CC
Confidence 34468898765 33443 4666666665311 111111111 12334556666643321 13
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--------C-CCEEEEccCCCcChHHHHhhhCCCEEEE---eeccCC---CCcccCHH
Q 043923 112 SKIVLTAGATSANETLMFCLAE--------P-GEAFLLPTPYYPGFDRDLKWRTGVEIVP---IQCTSL---NGFQITET 176 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~--------~-gd~Vl~~~P~y~~~~~~~~~~~g~~~~~---v~~~~~---~~~~~d~~ 176 (469)
+.+++++++++|++.+++.... + ..+|+....+|++....+....|..... -|.... -.| .|++
T Consensus 99 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~ 177 (408)
T PRK04612 99 EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVE 177 (408)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHH
Confidence 6899999999999999877531 1 2468888888887654332221221110 011000 011 2678
Q ss_pred HHHHHHHHHHhcCCceeEEEEecCCCCCCCCCC--HHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 177 AIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMS--RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 177 ~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s--~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
.+++.+.. +..+.++..|.+++|-+++ .+.+++|.++|++||+++|+||+|.++...+. +....
T Consensus 178 ~l~~~~~~------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~----~~a~~---- 243 (408)
T PRK04612 178 ALEAAMAG------GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT----LFAHW---- 243 (408)
T ss_pred HHHHhhCC------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc----hhhhh----
Confidence 88877642 3445677789888887665 67899999999999999999999987533332 11111
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-c-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-S-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKR 332 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 332 (469)
..+.+..+.||||++| +|+|+||++++++ +.+.+... . ..+..+++.+.++.+.|+...- ....++
T Consensus 244 -----~~~~~pdi~t~~K~l~-~G~piga~~~~~~-~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~-----~~l~~~ 311 (408)
T PRK04612 244 -----QEQVTPDIVTLAKALG-GGFPIGAMLAGPK-VAETMQFGAHGTTFGGNPLAAAVARVALRKLAS-----PQIAAN 311 (408)
T ss_pred -----hcCCCCCEEEEcchhc-CCCceEEEEECHH-HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHH
Confidence 1244556779999998 9999999998654 44443321 1 1223678888888777754221 223344
Q ss_pred HHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEE
Q 043923 333 LKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 408 (469)
Q Consensus 333 l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~ 408 (469)
+++.-+++.+.|+++ ++-.....-|.++.+.+..... .....++.. +.++||.+.+. +.+.+|+.
T Consensus 312 ~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~----~~a~~i~~~-l~~~Gvlv~~~------g~~~lRl~ 380 (408)
T PRK04612 312 VARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHA----GQAGAILDL-AAEHGLLLLQA------GPDVLRFV 380 (408)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchh----hHHHHHHHH-HHHCCeEEeeC------CCCEEEEc
Confidence 444445555555543 3221122235777777642100 112234444 45779999763 24679999
Q ss_pred eec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 409 FAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 409 ~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
... ++++++++++++|.+++++.-
T Consensus 381 Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 381 PALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHh
Confidence 876 599999999999999997643
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-17 Score=168.40 Aligned_cols=354 Identities=16% Similarity=0.131 Sum_probs=199.7
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ .+.+. .+.+.+++.+.. .....+.......+...++|+.+.+... ..
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql-------------~~~~~~~~~~~~~~~~~~la~~L~~~~p----~~ 100 (443)
T PRK08360 38 IEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQT-------------DKLIHYTPIYGFPVEPLLLAEKLIEIAP----GD 100 (443)
T ss_pred CCCCEEEEccccHhhcccCCCCHHHHHHHHHHH-------------HhccCccccccCcHHHHHHHHHHHHhCC----CC
Confidence 344568898766 44453 466666666531 1111222111123445566666654322 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCC--Ccc--
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLN--GFQ-- 172 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~--~~~-- 172 (469)
-+.+++++++++|+..+++... .....|+...-.|++....+....|. .+..+|.+... .+.
T Consensus 101 ~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (443)
T PRK08360 101 NPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKE 180 (443)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCc
Confidence 3689999999999999988752 23456777777777653222111121 12223322100 010
Q ss_pred ------cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 173 ------ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMS-RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 173 ------~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s-~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
.+++.+++.++.. ..+.++++|++.--+||+|.+++ .+.+++|.++|++||+++|+||+|.++.+.+.. ..
T Consensus 181 ~~~~~~~~~~~~~~~l~~~-~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~-~a 258 (443)
T PRK08360 181 PGSCKMECVEYIKEKFEGE-VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKW-FA 258 (443)
T ss_pred hhhhHHHHHHHHHHHHHhc-cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccc-hh
Confidence 1123344444321 01246887766633699999887 557999999999999999999999985444432 11
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhH
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
...+ . ..+.++ ++||++| +|+|+||+++++ .+.+.+.... ..+..+++.+.++.++|+...- .
T Consensus 259 ~~~~-~--------~~pDii---tlsK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~ 323 (443)
T PRK08360 259 IEHF-G--------VEPDII---TLGKPLG-GGLPISATIGRA-EIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-K 323 (443)
T ss_pred hhhc-C--------CCCCEE---Eeccccc-CCceeEEEEEcH-HHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-c
Confidence 1111 1 123333 7799999 999999999954 4545443222 1223567777777777654211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEecccccc--cCChhHHHHHHHHHHHhCCeEEeCCCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYDVKLNISPGSSC 397 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~--~~~~~~~~~l~~~ll~~~GI~v~pg~~f 397 (469)
...+.+++.-+++.+.|++ .++......-|.++.+.+..... .........+...+ .++||.+.+..
T Consensus 324 ----~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~-- 396 (443)
T PRK08360 324 ----NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRA-WELGLIVTFFS-- 396 (443)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHH-HHCCeEEeecC--
Confidence 1223333333344444433 33221122235777776642111 01111223455554 46799986431
Q ss_pred CCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 398 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 398 ~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+.+|++.+. +++++++++++++.++++..++
T Consensus 397 ----~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 397 ----GNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred ----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3579997776 5999999999999999987755
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=164.75 Aligned_cols=322 Identities=14% Similarity=0.144 Sum_probs=218.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH-HhhhCCC
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD-LKWRTGV 158 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~-~~~~~g~ 158 (469)
..|.....+.+|+++++++++ .+.++.+++++.|+.+++...+++||.| +..+|...... +... |.
T Consensus 72 d~Yagd~s~~~LE~~vAe~lG----------~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~-Ga 138 (460)
T PRK13237 72 EAYAGSRNFYHLEETVQEYYG----------FKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELN-GG 138 (460)
T ss_pred hhhcCCCcHHHHHHHHHHHHC----------CCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhC-Cc
Confidence 358888889999999999986 4568999999999998877778999965 44444433333 4445 88
Q ss_pred EEEEeecc--------CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEE
Q 043923 159 EIVPIQCT--------SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTMSRNELNLLVNIITEKNIHLIS 229 (469)
Q Consensus 159 ~~~~v~~~--------~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~~~~~iI~ 229 (469)
.++.+..+ ....+.+|++.++++|++. ..+++++|.+.+++|.. |+..|.++++++.++|++||+.||+
T Consensus 139 ~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~--~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~ 216 (460)
T PRK13237 139 IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV--GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFF 216 (460)
T ss_pred EEEeeecccccccccCCCCCCCcCHHHHHHHhccc--cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEE
Confidence 66655322 1245789999999999742 12356678888899988 7999999999999999999999999
Q ss_pred eccccccccCCC----------CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc
Q 043923 230 DEIYSGTVFSSP----------GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299 (469)
Q Consensus 230 Deay~~~~~~~~----------~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~ 299 (469)
|.+.. ++.. ...++.++..++ ..--..++.|++|.++.+ . -|+++.+++.+.+..+...
T Consensus 217 DaAra---~gna~fI~~re~~y~~~~i~ei~~e~------~s~aD~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~ 285 (460)
T PRK13237 217 DATRC---VENAYFIKEREEGYQDKSIKEIVHEM------FSYADGCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELV 285 (460)
T ss_pred ECcch---hcChhhhcccccccCCCcHhHHhhhc------cCcCcEEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhc
Confidence 99986 3311 112333333322 112345566899999755 1 3899998888877766542
Q ss_pred -------ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccc---cc
Q 043923 300 -------SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL---LR 369 (469)
Q Consensus 300 -------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~---~~ 369 (469)
+++..+.-...+++.-|.+... .+++..+.+ ..++|.+.|.+.|+++..|.+|.-++++.... +.
T Consensus 286 ~~~eG~~tygg~~grd~~alAvgl~E~~~-~~y~~~ri~----~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~ 360 (460)
T PRK13237 286 VVYEGMPSYGGMAGRDMEAMAIGIEESVQ-YEYIEHRVG----QVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLP 360 (460)
T ss_pred cccCCCcCCCChhhhHHHHHHhHHHhhch-HHHHHHHHH----HHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCC
Confidence 1222323233344333433221 234443333 44788999999999999999999899987653 22
Q ss_pred cCChhHHHHHHHHHHHhCCeEEe-CCCC-CCCC----C-----CCeEEEEeec-C-CHHHHHHHHHHHHHHHHhhcc
Q 043923 370 SNTFEAEMELWKKIVYDVKLNIS-PGSS-CHCT----E-----PGWFRVCFAN-M-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 370 ~~~~~~~~~l~~~ll~~~GI~v~-pg~~-f~~~----~-----~~~iRi~~~~-~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
... .....++.+|..+.||.-. -|+. ++.+ . -..+|+++.. + |.+.++...++|..+.++...
T Consensus 361 ~~~-~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 361 QDQ-FPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred ccc-ChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 222 3445788888889999653 2332 1111 0 2479999966 3 999999999999998876554
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-18 Score=171.47 Aligned_cols=346 Identities=15% Similarity=0.109 Sum_probs=200.5
Q ss_pred CCCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+. ..+ .++.+.+++.+..+. ....|.+..+..+|.+.+++.+. ..
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~------------~~~~~~~~~~~~~la~~L~~~~~---------~~ 106 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK------------GLSFGAPTELEVELAELVIELVP---------SI 106 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh------------CCcCCCCCHHHHHHHHHHHHhCC---------CC
Confidence 345689998774 322 456666666553211 01122333344455555554431 35
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEE----------EEeeccCCCCcc---cCHH
Q 043923 112 SKIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEI----------VPIQCTSLNGFQ---ITET 176 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~----------~~v~~~~~~~~~---~d~~ 176 (469)
+.+++++|+++|+..+++.... .++.|+..++.|+++...+....|... .+.+.. .+.+. .|++
T Consensus 107 ~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ 185 (426)
T PRK00062 107 EMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFA-KHTLTAPYNDLE 185 (426)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccc-cceEEcCCCCHH
Confidence 6899999999999999988532 367899999999987633221101100 000000 00000 2678
Q ss_pred HHHHHHHHHHhcCCceeEEEEecCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccc
Q 043923 177 AIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMS-RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 255 (469)
Q Consensus 177 ~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s-~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~ 255 (469)
.+++.+++. ..++.+|++..-...+|.+.+ .+.+++|.++|++||+++|+||+|.++.. +.. ...+...
T Consensus 186 ~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~-g~~--~~~~~~~---- 255 (426)
T PRK00062 186 AVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV-ALG--GAQGYYG---- 255 (426)
T ss_pred HHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcccc-CCc--cHHHHhC----
Confidence 888877531 235666666532344888775 88899999999999999999999987522 221 1112211
Q ss_pred ccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh---cc--cccCcHHHHHHHHHHhcCchhhHHHHHHHH
Q 043923 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---SS--FGLVSSQTQYLLSALLSDKKFTQNYISENK 330 (469)
Q Consensus 256 ~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~---~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 330 (469)
..+. +.++||.+| .|+++|+++++ +.+.+.+... .. .+..+++.+.++.+.|+...- .+..++.+
T Consensus 256 ----~~pD---i~~~gK~l~-~G~p~ga~~~~-~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~ 325 (426)
T PRK00062 256 ----VTPD---LTTLGKIIG-GGLPVGAFGGR-REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELE 325 (426)
T ss_pred ----CCcc---hHhhhhHhh-CCCcceeeeEH-HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHH
Confidence 1112 358999998 99999999885 4455544311 11 123567777777776653221 12344444
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccc-c------cCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 331 KRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL-R------SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 331 ~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~-~------~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
+.....++.|.+.++++++.......|.++-+.+.... . .........++..++ ++||.+.|.. .+
T Consensus 326 ~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~------~~ 398 (426)
T PRK00062 326 ALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQ------FE 398 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCC------cC
Confidence 44444455555555556665433223455555553210 0 001011234555555 6799998742 12
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 404 WFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 404 ~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+++++. ++++++++++++|.+++++.
T Consensus 399 ~~~~~~~-~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 399 AGFVSAA-HTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred ceeeecc-CCHHHHHHHHHHHHHHHHhh
Confidence 3677654 59999999999999998753
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-18 Score=168.54 Aligned_cols=284 Identities=19% Similarity=0.243 Sum_probs=194.5
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCC-CcEEEeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChHHH---H-hhhCCCE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFDRD---L-KWRTGVE 159 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~---~-~~~~g~~ 159 (469)
..+.|+.++++++ .++ ++|++++|+++++..++.++ .++||.|++..-.|++.... + +.. |++
T Consensus 45 ~~~~r~~la~~lg--------~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~-g~~ 115 (371)
T PF00266_consen 45 LEEAREALAKLLG--------APPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRK-GAE 115 (371)
T ss_dssp HHHHHHHHHHHHT--------SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHT-TEE
T ss_pred HHHHHHHHHHhcC--------Cccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccc-hhh
Confidence 4577888888886 566 89999999999999999999 79999999999988776522 2 244 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
+..++.+..+ .+|+++++++|.+ ++++|+++.-+|.||..++.+ +|.++|+++|+++++|.+++ ++
T Consensus 116 v~~i~~~~~~--~~~~~~~~~~l~~------~~~lv~~~~~~~~tG~~~pi~---~I~~~~~~~~~~~~vD~~~~---~g 181 (371)
T PF00266_consen 116 VRVIPADPGG--SLDLEDLEEALNP------DTRLVSISHVENSTGVRNPIE---EIAKLAHEYGALLVVDAAQS---AG 181 (371)
T ss_dssp EEEEEEGTTS--SCSHHHHHHHHHT------TESEEEEESBETTTTBBSSHH---HHHHHHHHTTSEEEEE-TTT---TT
T ss_pred hccccccccc--hhhhhhhhhhhcc------ccceEEeecccccccEEeeec---eehhhhhccCCceeEechhc---cc
Confidence 9999887433 5789999999975 999999999999999999955 58889999999999999997 44
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc-------------------
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS------------------- 300 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~------------------- 300 (469)
..+ ..+. ..+..+++.|..|.+|.+ .+|+++.+++.+.. ++....
T Consensus 182 ~~~-id~~------------~~~~D~~~~s~~Kl~gp~--G~g~l~v~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~ 245 (371)
T PF00266_consen 182 CVP-IDLD------------ELGADFLVFSSHKLGGPP--GLGFLYVRPEAIER-LRPAKPGGGYLDFPSLQEYGLADDA 245 (371)
T ss_dssp TSS---TT------------TTTESEEEEESTSTTSSS--TEEEEEEEHHHHHH-HHTSSSSSSTTTHHHHHHHCHHSTT
T ss_pred ccc-cccc------------ccccceeeecccccCCCC--chhhheehhhhhhc-cccccccccccccccchhccccccc
Confidence 332 2222 235667889999944444 47999986654433 221100
Q ss_pred --c--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-Cceec----CCceEEEEEecccccccC
Q 043923 301 --F--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLK----SNAGLFCWVDMRHLLRSN 371 (469)
Q Consensus 301 --~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~----~~~g~~~~v~~~~~~~~~ 371 (469)
+ ++.+.+...++..+++... +.-+++.+++..+..+++.+.|++++ +.+.. ...+..+.+.++..
T Consensus 246 ~~~~~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 319 (371)
T PF00266_consen 246 RRFEGGTPNVPAIYALNEALKLLE--EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS---- 319 (371)
T ss_dssp TGSSSSS--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS----
T ss_pred ccccccceeeehhhhHHHHHhhhh--ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC----
Confidence 1 1344444444444443321 23356667778888888999998884 44433 22334555666431
Q ss_pred ChhHHHHHHHHHHHhCCeEEeCCCCCCC------CCCCeEEEEeecC-CHHHHHHH
Q 043923 372 TFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANM-SEDTLKLS 420 (469)
Q Consensus 372 ~~~~~~~l~~~ll~~~GI~v~pg~~f~~------~~~~~iRi~~~~~-~~e~i~~~ 420 (469)
+..++...|.++ ||.+..|..+.. ...+.+|+|++.. +++|++++
T Consensus 320 ---~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 320 ---DADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp ---SHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred ---CHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 122455555544 999999876541 1137899999874 89999874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=170.21 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=179.7
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC---------CCC-EEEEccCCCcChHHHHhhhCC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE---------PGE-AFLLPTPYYPGFDRDLKWRTG 157 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~---------~gd-~Vl~~~P~y~~~~~~~~~~~g 157 (469)
..+|.+.+++++ ..+.+++++++++|+..++..... +++ .|+...-+|.+....+....+
T Consensus 119 ~~~la~~L~~~~----------~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~ 188 (474)
T PLN02624 119 FPEFAEYLTSMF----------GYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSC 188 (474)
T ss_pred HHHHHHHHHhhc----------CCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCC
Confidence 355666666543 246899999999999999875432 123 577777777665322221111
Q ss_pred CE------------EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHH-HHHHHHHHHhcC
Q 043923 158 VE------------IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNE-LNLLVNIITEKN 224 (469)
Q Consensus 158 ~~------------~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~-l~~l~~~~~~~~ 224 (469)
-. +..+|. .|++.+++.++. ...++.+|++..++|++|.+++.++ +++|.++|++||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~g 258 (474)
T PLN02624 189 DNEATRGFGPLLPGHLKVDF-------GDLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHN 258 (474)
T ss_pred CccccccCCCCCCCceEeCC-------CCHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 11 112221 167888888763 2247888888888999999887774 999999999999
Q ss_pred eEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cc
Q 043923 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FG 302 (469)
Q Consensus 225 ~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~ 302 (469)
+++|+||+|.++...+..+ . .+... ..+.++ ++||.+|.+++++|+++++++ +...+..... ..
T Consensus 259 illI~DEv~tG~GrtG~~~-a-~~~~~--------i~pDiv---~lsK~lggG~~pigav~~~~~-i~~~~~~~~~~~T~ 324 (474)
T PLN02624 259 VLMIADEIQTGLARTGKML-A-CDWEE--------VRPDVV---ILGKALGGGVIPVSAVLADKD-VMLCIKPGEHGSTF 324 (474)
T ss_pred CEEEEeccccCcCcCcchh-h-HHhcC--------CCCCEE---EecccccCCCCcceeeeecHH-HHhHhccCCcCCCC
Confidence 9999999998743333211 1 11111 112233 468999966699999999544 4333332221 11
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc----C--CceecCCceEEEEEecccccccCChhHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA----G--ISCLKSNAGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g--~~v~~~~~g~~~~v~~~~~~~~~~~~~~ 376 (469)
..+++.+.++.+.|+... . ....+...+..+.+.+.|+++ . +....+.+ .++.+.+..... .....
T Consensus 325 ~g~pl~~aaa~aaLe~l~--~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G-~~~~i~l~~~~~--~~~~a 396 (474)
T PLN02624 325 GGNPLASAVAMAALQVVQ--D---EKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRG-LLNAVVLNSPKL--GPVSA 396 (474)
T ss_pred CCCHHHHHHHHHHHHHHH--h---chHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeE-EEEEEEecCCCc--ChHHH
Confidence 356777777777764321 1 112222333334444444332 1 22233444 555555542110 01223
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+++..+ .++||.+.|+. ++++|+++.. ++++++++++++|+++++.-..
T Consensus 397 ~~~~~~L-~e~GV~v~p~~------~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~ 447 (474)
T PLN02624 397 YDVCLKL-KERGLLAKPTH------DTIIRLAPPLSISEDELQECSKALSDVLEHDLP 447 (474)
T ss_pred HHHHHHH-HhCCeEEecCC------CCEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566665 56799998762 5689999754 5999999999999999866554
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-18 Score=170.54 Aligned_cols=275 Identities=12% Similarity=0.102 Sum_probs=176.3
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCC---CEEEEccCCCcChHH----HHhhhCCCEE----EEeeccCCCCcccCHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAEPG---EAFLLPTPYYPGFDR----DLKWRTGVEI----VPIQCTSLNGFQITETA 177 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~~g---d~Vl~~~P~y~~~~~----~~~~~~g~~~----~~v~~~~~~~~~~d~~~ 177 (469)
.++++|++|+|+|+++..++.++.+++ +.|++....|+.... .++.. |+++ +.++.+ .++.+|++.
T Consensus 84 ~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~-g~~~~~~~~~~~~~--~~g~~~~~~ 160 (406)
T TIGR01814 84 AKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLTVEESMVQIEPR--EEETLRLED 160 (406)
T ss_pred CCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhc-CCCcccceEEeccC--CCCccCHHH
Confidence 678999999999999999999886654 368888888987433 23444 8876 455543 344678889
Q ss_pred HHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccccc
Q 043923 178 IEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 257 (469)
Q Consensus 178 l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~ 257 (469)
+++.++.. ++++++|++++++|.||.+++ +++|.++|+++|+++++|++++ ++..+ ..+.
T Consensus 161 l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~---~G~~~-id~~---------- 220 (406)
T TIGR01814 161 ILDTIEKN---GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHA---VGNVP-LDLH---------- 220 (406)
T ss_pred HHHHHHhc---CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcccc---cCCcc-cccc----------
Confidence 98887532 347899999999999999998 5558889999999999999998 33222 2221
Q ss_pred CCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhc------------------------ccccCcHHHHHHH
Q 043923 258 TQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMS------------------------SFGLVSSQTQYLL 312 (469)
Q Consensus 258 ~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~------------------------~~~~~s~~~q~~~ 312 (469)
..+..+++.|.+|+++ -|| .|..+. ++.......... ..++.+.+...++
T Consensus 221 --~~gvD~~~~s~hK~l~g~pG--~~l~v~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l 295 (406)
T TIGR01814 221 --DWGVDFACWCTYKYLNAGPG--AGAFVH-EKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAAL 295 (406)
T ss_pred --cCCCCEEEEcCccccCCCCC--eEEEEe-hhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHH
Confidence 2256788899999874 344 333333 332211110000 0122344444444
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-----CCceecCC----ceEEEEEecccccccCChhHHHHHHHHH
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-----GISCLKSN----AGLFCWVDMRHLLRSNTFEAEMELWKKI 383 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-----g~~v~~~~----~g~~~~v~~~~~~~~~~~~~~~~l~~~l 383 (469)
.++++-.. ..-++..+++..+..+++.+.|++. ++++..+. .+..+.+.++ .. ..++...|
T Consensus 296 ~~al~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--~~------~~~~~~~L 365 (406)
T TIGR01814 296 RGSLDIFD--QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--VP------GKAVFQAL 365 (406)
T ss_pred HHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--CC------HHHHHHHH
Confidence 44433211 1113556667777777888888764 36665442 1234555555 11 12455555
Q ss_pred HHhCCeEEeCCCCCCCCCCCeEEEEee-c-CCHHHHHHHHHHHHHHH
Q 043923 384 VYDVKLNISPGSSCHCTEPGWFRVCFA-N-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 384 l~~~GI~v~pg~~f~~~~~~~iRi~~~-~-~~~e~i~~~l~~L~~~l 428 (469)
.++||.+... .++.+|+|++ . .+++++++++++|++++
T Consensus 366 -~~~gi~v~~~------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 366 -IKRGVIGDKR------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred -HHCCEEEecc------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 4669987532 2458999994 3 49999999999998875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-17 Score=163.20 Aligned_cols=351 Identities=13% Similarity=0.056 Sum_probs=215.7
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
...|+|-..||..++......-........ +| +..-.-|+.....+++.....+..++.|+ .+.-+|-.-
T Consensus 49 ~~~l~LiasEN~~s~~v~~a~~s~l~nkya---eg---~pg~ryy~g~~~~d~ie~l~~~ra~~lf~----a~~anvqp~ 118 (493)
T PRK13580 49 RSSLKLIASENYSSLAVQLAMGNLLTDKYA---EG---TPGHRFYAGCQNVDTVEWEAAEHAKELFG----AEHAYVQPH 118 (493)
T ss_pred hcCceEecccccCCHHHHHHhcccccccCc---CC---CCCccccCCCchHHHHHHHHHHHHHHHhC----CCcccccCC
Confidence 356889888988776533332222211111 11 11223355566677777777777777766 445566666
Q ss_pred CChHHHHHHHHHHhcCC-------------------------------CCEEEEccCCCcChHHH---Hhhh-CCCEEEE
Q 043923 118 AGATSANETLMFCLAEP-------------------------------GEAFLLPTPYYPGFDRD---LKWR-TGVEIVP 162 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~-------------------------------gd~Vl~~~P~y~~~~~~---~~~~-~g~~~~~ 162 (469)
+|+ +|+..++.++++| ||+|+..++..+++... .... ...+++.
T Consensus 119 Sg~-~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~ 197 (493)
T PRK13580 119 SGA-DANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRS 197 (493)
T ss_pred CcH-HHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEe
Confidence 665 5666777888876 89999888776554211 1111 0245666
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++++.+ ...+|++++++.+++ .++.|+++..+|- |...+ +++|.++|+++|+++++|++|.-..+.+..
T Consensus 198 y~vd~~-~g~iD~d~l~~~~~~------~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~ 266 (493)
T PRK13580 198 YGVDPD-TGLLDYDEIAALARE------FKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKV 266 (493)
T ss_pred cccCcc-cCccCHHHHHHHHhh------cCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceecccc
Confidence 666643 346899999999886 6667788877776 44666 555788888999999999999855454322
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc--cCcHHHHHHHHHHhcCch
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~ 320 (469)
.... ..+ ..+..++++|++|++ .|-+.|++++++ .+.+.+....++. +..++...+++..+....
T Consensus 267 ~~~~--~~~--------~~~~D~vtgT~hKaL--~GP~GG~I~~~~-~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~ 333 (493)
T PRK13580 267 FTGD--EDP--------VPHADIVTTTTHKTL--RGPRGGLVLAKK-EYADAVDKGCPLVLGGPLPHVMAAKAVALAEAR 333 (493)
T ss_pred chhh--cCC--------CCCCcEEEeCChhhc--cCCCeEEEEecH-HHHHHHhhCCCcccCCCccHHHHHHHHHHHHHh
Confidence 1100 000 114568899999998 233458888854 4444454333332 122222222222222110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
....+..++++.++.++|.+.|.+.|+++.. ...+..+++.+.+.. .....+.+.|.+.||.+.+-.....
T Consensus 334 --~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~------~~g~~a~~~L~e~GI~vn~i~~Ptv 405 (493)
T PRK13580 334 --TPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFG------LTGRQAESALLDAGIVTNRNSIPSD 405 (493)
T ss_pred --CccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHH------HHHHHHHHHHHHCCeEEccccCCCC
Confidence 1112456778888999999999999998753 233467788886421 1223456567788999975443322
Q ss_pred -CC---CCeEEEEeec-----CCHHHHHHHHHHHHHHHHhh
Q 043923 400 -TE---PGWFRVCFAN-----MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 400 -~~---~~~iRi~~~~-----~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+ +..|||++.. +++++++++++.|.++++..
T Consensus 406 p~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 406 PNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 22 5679999864 25899999999999998754
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=166.24 Aligned_cols=296 Identities=13% Similarity=0.132 Sum_probs=185.2
Q ss_pred CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEe
Q 043923 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (469)
Q Consensus 85 ~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v 163 (469)
.....+|++++|++++ .++.++++|+++|+..++.++ +++||.|+++.|+|..+...+... |++++.+
T Consensus 28 g~~~~~le~~la~~~g----------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~-G~~~~~~ 96 (380)
T TIGR03588 28 GPTVPAFEEALAEYVG----------AKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYC-GAKVDFV 96 (380)
T ss_pred ChhHHHHHHHHHHHHC----------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHc-CCEEEEE
Confidence 3456899999999996 234566778899999999998 789999999999999998888777 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc-ccCCCC
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT-VFSSPG 242 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~-~~~~~~ 242 (469)
++++ .++.+|++++++++++. ..+++++|+++ |++|...+ +++|.++|++||++||+|++++.. .+++..
T Consensus 97 ~~~~-~~~~~d~~~l~~~i~~~--~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~ 167 (380)
T TIGR03588 97 DIDP-DTGNIDEDALEKKLAAA--KGKLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGGKP 167 (380)
T ss_pred ecCC-CcCCcCHHHHHHHhhcc--cCCCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCCEe
Confidence 9875 35779999999998731 01277887754 56898776 566888899999999999999842 122211
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCc--cccCCCcceEEEEEecCHHHHHHHHHhccccc-----------------
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLS--KDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL----------------- 303 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~----------------- 303 (469)
.. .. . ...+.+.|++ |.++. | ..|+++..++.+.+.++.....+.
T Consensus 168 ~g---~~-~----------~~d~~~~S~~~~K~~~~-~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 231 (380)
T TIGR03588 168 VG---NC-R----------YADATVFSFHPVKIITT-A-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYY 231 (380)
T ss_pred CC---Cc-c----------ccceEEEecCCCCcccc-c-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCccee
Confidence 10 00 0 1135555665 88863 3 468888877776655543322110
Q ss_pred ----------CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC-C---ceEEE-EEecccc
Q 043923 304 ----------VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS-N---AGLFC-WVDMRHL 367 (469)
Q Consensus 304 ----------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~-~---~g~~~-~v~~~~~ 367 (469)
++.+....+..-|. .+++..++-++..+++.+.|..+ ++.+..+ . ..+++ .+.++..
T Consensus 232 ~~~~~g~n~~m~~l~aa~g~~qL~-------~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 304 (380)
T TIGR03588 232 EQQELGFNYRMTDIQAALGLSQLK-------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE 304 (380)
T ss_pred eeeccccccCccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc
Confidence 11111111111111 13444445555666777777765 3443322 1 12222 2233211
Q ss_pred cccCChhHHHHHHHHHHHhCCeEEeCCCCC-----------CCC-C-------CCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 368 LRSNTFEAEMELWKKIVYDVKLNISPGSSC-----------HCT-E-------PGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 368 ~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f-----------~~~-~-------~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
. . .+..++.+.| +++||.++..-.. ... - ...+++.+.. +++++++..++.|+++
T Consensus 305 -~--~-~~r~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 305 -F--G-CTRKEVFEAL-RAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred -C--C-CCHHHHHHHH-HHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 0 0 1223455554 5779988743211 000 0 1457787754 5999999999999886
Q ss_pred H
Q 043923 428 V 428 (469)
Q Consensus 428 l 428 (469)
+
T Consensus 380 ~ 380 (380)
T TIGR03588 380 L 380 (380)
T ss_pred C
Confidence 4
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.8e-19 Score=165.03 Aligned_cols=288 Identities=18% Similarity=0.268 Sum_probs=178.5
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC------CCEEEEccCCCcChHHHHhhhCCCEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEP------GEAFLLPTPYYPGFDRDLKWRTGVEIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~------gd~Vl~~~P~y~~~~~~~~~~~g~~~~ 161 (469)
.++|.++|.++++..-+ ..++.-.|++++|++|++++++.+|... --.|+...|.|+.|....... .-...
T Consensus 45 s~eL~~~Ir~LH~~VGN--Avt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f-~s~~y 121 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGN--AVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFF-DSRLY 121 (363)
T ss_dssp -HHHHHHHHHHHHHH-S--B--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT--BTTE
T ss_pred cHHHHHHHHHHHHHhcc--ccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhc-cccCc
Confidence 58999999998876644 2345568999999999999999998532 147999999999998776544 33222
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE-EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV-LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v-vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
...-|. ..|. +- +.....| ++++||||.|.. .+.+++ .-+..+|.|-||.-..|..
T Consensus 122 ~w~Gda-~~~~-~~-------------~~~~~~IElVTSPNNPDG~l-----r~~V~~---g~~~k~I~D~AYYWPhyTp 178 (363)
T PF04864_consen 122 KWAGDA-SNFK-NS-------------DNPSPYIELVTSPNNPDGQL-----REAVLN---GSSGKVIHDLAYYWPHYTP 178 (363)
T ss_dssp EEEEEC-CCGT-T--------------S-CCGEEEEEESS-TTT-----------SST---TTEEEEEEE-TT-STTTS-
T ss_pred cccccH-Hhhc-cC-------------CCCCCeEEEEeCCCCCcccc-----cchhcC---CCCcceeeeeeeecccccc
Confidence 333222 1221 10 0022334 899999999987 444443 5567789999997332322
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcC
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSD 318 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~ 318 (469)
-. . ..+..|.+.|+||.-|.+|-|+||.+..+..+.+.+.++... ..+|.-+|.-+..+|+.
T Consensus 179 I~--~--------------~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~ 242 (363)
T PF04864_consen 179 IT--A--------------PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKV 242 (363)
T ss_dssp ----S---------------B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHH
T ss_pred cC--C--------------CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 11 1 225667888999999999999999999888887776554322 23777777766666552
Q ss_pred c----hh---hHHHHHHHHHHHHHHHHHHHHHHHhcC-Cce--ec-----------CCceEEEEEecccccccCChhHHH
Q 043923 319 K----KF---TQNYISENKKRLKQRHRKLVSGLEKAG-ISC--LK-----------SNAGLFCWVDMRHLLRSNTFEAEM 377 (469)
Q Consensus 319 ~----~~---~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v--~~-----------~~~g~~~~v~~~~~~~~~~~~~~~ 377 (469)
. +. ..+....-++.+++|.+.|.+.+.+-+ ++. .. ....-|.|+++....+
T Consensus 243 v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed-------- 314 (363)
T PF04864_consen 243 VLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREED-------- 314 (363)
T ss_dssp HHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGG--------
T ss_pred HHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCccc--------
Confidence 1 10 012456667788888888998887542 111 11 1123599999985321
Q ss_pred HHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 378 ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 378 ~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+-|...|+++||.-+.|..|+. ++.|+|||+-. ++++++.++++|+.+
T Consensus 315 ~DC~~~l~~~~I~tr~G~~fga-~~ryVRlSml~-~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 315 EDCYAVLREAKIITRSGVLFGA-DSRYVRLSMLK-RDDDFDQLLERLSKL 362 (363)
T ss_dssp SSHHHHHHCTTEEEEEGGGGTS--TTEEEEESSS--HHHHHHHHHHHHCC
T ss_pred ccHHHHHHhCCcccCCCCccCC-CCCeEEEeccC-CHHHHHHHHHHHHhh
Confidence 2377788899999999999986 57799999974 899999999999864
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-17 Score=161.56 Aligned_cols=211 Identities=13% Similarity=0.164 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEEee
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVPIQ 164 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~v~ 164 (469)
.+.++++++.+....+ ..+. ++++++++|+..++.+++++||.|++++|.|+++... ++.. |+++..++
T Consensus 63 nPt~~~Le~~la~le~-----~~~~-v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~-Gi~v~~vd 135 (395)
T PRK05967 63 TPTTDALCKAIDALEG-----SAGT-ILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRL-GVEVEYYD 135 (395)
T ss_pred ChHHHHHHHHHHHHhC-----CCCE-EEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhc-CeEEEEeC
Confidence 4544555555443221 3444 4555578999999999999999999999999987643 3555 99988875
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+ +.+.+++++++ ++++|++++|+||++. ..++++|+++|+++|+++|+|++|+..++-
T Consensus 136 ~~-------~~e~l~~al~~------~TklV~lesPsNP~l~---v~dl~~I~~la~~~g~~vvVD~t~a~p~~~----- 194 (395)
T PRK05967 136 PE-------IGAGIAKLMRP------NTKVVHTEAPGSNTFE---MQDIPAIAEAAHRHGAIVMMDNTWATPLYF----- 194 (395)
T ss_pred CC-------CHHHHHHhcCc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHhCCEEEEECCccCceec-----
Confidence 32 34668877765 8999999999999764 456888999999999999999999753221
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHH-Hhcccc-cCcHHHHHHHHHHhcCchh
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAAT-KMSSFG-LVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~-~~~~~~-~~s~~~q~~~~~~l~~~~~ 321 (469)
... ..+..+++.|.+|.++ -.++-.|+++.++. ..+.+. .....+ .+++...+.+.+-++.
T Consensus 195 ~pl------------~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~-~~~~l~~~~~~~G~~~~p~da~l~~rgl~T--- 258 (395)
T PRK05967 195 RPL------------DFGVDISIHAATKYPSGHSDILLGTVSANEK-CWPQLLEAHGTLGLCAGPDDTYQILRGLRT--- 258 (395)
T ss_pred Chh------------HcCCCEEEEecccccCCCCCeeEEEEEcCHH-HHHHHHHHHHHcCCCCCHHHHHHHHcCccc---
Confidence 112 2256689999999874 34577887776443 322222 222222 3555555544444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.-+.++..++...+.+.|+++
T Consensus 259 ----l~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 259 ----MGIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566677778888899877
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=152.02 Aligned_cols=344 Identities=15% Similarity=0.180 Sum_probs=223.6
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
..+||-+.+-..|.+.+++++.+.. -+..-|+.......|++.+|+.++ +...+++++
T Consensus 22 ~~vDLRSDTvT~PTdeMr~am~eA~-------------vgDdVyGeD~tt~rLE~~vA~l~G---------KEAgLFv~S 79 (384)
T KOG1368|consen 22 RSVDLRSDTVTVPTDEMRRAMAEAS-------------VGDDVYGEDPTTNRLEQRVAELFG---------KEAGLFVPS 79 (384)
T ss_pred eccccccccccCChHHHHHHHhhcc-------------cCcccccCCccHHHHHHHHHHHhC---------ccceeeecc
Confidence 4689999988889988888887752 123346666667999999999997 345577888
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH--HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH--hcCCceeE
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRD--LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ--KRHLKVKG 194 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~~~ 194 (469)
|+...+..++..+-++|..|++.+-+|--..+. +....|+.+.++.-. .+-.+++++++.++.... -..+.+++
T Consensus 80 GTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e--~dgtm~ledIe~~ir~~~GD~H~p~T~L 157 (384)
T KOG1368|consen 80 GTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNE--NDGTMDLEDIEAAIRVPKGDCHMPPTKL 157 (384)
T ss_pred cccccHHHHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeeeC--CCCeeeHHHHHHhhcCCCCCccCCCceE
Confidence 877777777777777999999998876433222 222337777777644 344689999999987321 23457899
Q ss_pred EEEecCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC--CccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 195 VLVTNPSNPLG-TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 195 vvl~~P~NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
|++.|-+|-+| .++|.|++.++.++|++||+.+..|.+.. |+.. ...++..+.. ..+.+-+ .+|
T Consensus 158 IclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi---~NAavasgV~vk~i~~--------~fDSVsi--CLS 224 (384)
T KOG1368|consen 158 ICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI---FNAAVASGVPVKKICS--------AFDSVSI--CLS 224 (384)
T ss_pred EEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh---hhHHHHcCCCHHHHHH--------hhhhhhh--hhh
Confidence 99999987776 99999999999999999999999999886 6532 2245555544 2233322 689
Q ss_pred cccCCCcceEEEEEecCHH-HHHHHHHhccccc-C--cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 272 KDLGLPGFRVGAIYSNDDM-VVAAATKMSSFGL-V--SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~-~~~~~~~~~~~~~-~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
|.+|.| +|.++..++. +.++.......+. + +.+..+++.-+|.. . ....+ .-.++.+.+.+.++..
T Consensus 225 KglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~-~-----~~~L~-~dHk~A~~lAe~~~~~ 294 (384)
T KOG1368|consen 225 KGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE-N-----VPLLR-ADHKRAKELAEYINTP 294 (384)
T ss_pred ccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc-c-----hHHHH-HHHHHHHHHHHHhccc
Confidence 999855 7887654544 4433322223321 1 22222222222221 1 22222 2233456677777776
Q ss_pred C-CceecC-CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHH
Q 043923 348 G-ISCLKS-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 424 (469)
Q Consensus 348 g-~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L 424 (469)
+ +++.-+ ...+++.+.+.... ....+++..+ +++||.+.+|..+ .+|+.+.. +++++++..+..+
T Consensus 295 ~~i~v~v~a~etNiv~~~l~q~~-----~~~~~l~~~~-~k~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~~~ 362 (384)
T KOG1368|consen 295 EEIRVEVPAVETNIVNMVLCQAR-----LTAEELCKFL-EKNGILLMGGASR------RIRIVLHHQVTDEDVEYVKSVL 362 (384)
T ss_pred cceeeecchhhcceeeeeccccc-----CCHHHHHHHH-HHCCeEEeecccc------ceEEEEEEecCHHHHHHHHHHH
Confidence 4 666443 34467766654211 1233566665 5789999987643 48999976 7999999999999
Q ss_pred -HHHHHhhcccccccccc
Q 043923 425 -KAFVDSITTTLHNQSNH 441 (469)
Q Consensus 425 -~~~l~~~~~~~~~~~~~ 441 (469)
+.++.....-+..-+||
T Consensus 363 ~k~~~~q~~~~~~~~~~~ 380 (384)
T KOG1368|consen 363 SKKFLKQLTFCFNGPTNF 380 (384)
T ss_pred HHHHHhhcCcccCCcchh
Confidence 55555553333333333
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-17 Score=164.21 Aligned_cols=353 Identities=14% Similarity=0.081 Sum_probs=202.2
Q ss_pred CCCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 34 VQNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 34 ~~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
......+||+..+ ...+. .+.+.+++++..+. .. ...+.. ...+....+|+.+.+.... -
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~----------~~-~~~~~~--~~~~~~~~la~~l~~~~p~---~ 99 (421)
T PRK06777 36 DVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQ----------FT-HTAYQI--VPYASYVTLAERINALAPI---D 99 (421)
T ss_pred eCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhh----------cc-cccccc--cCChHHHHHHHHHHHhCCC---C
Confidence 3344568888765 23333 45566666653111 00 111111 1123334555555433210 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCE-------------EEEeeccCC-CC--c
Q 043923 110 DTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVE-------------IVPIQCTSL-NG--F 171 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~-------------~~~v~~~~~-~~--~ 171 (469)
..+.+++++++++|++.+++... .....|+....+|++....+....+.. +..++.+.. .+ .
T Consensus 100 ~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 179 (421)
T PRK06777 100 GPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSV 179 (421)
T ss_pred CCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCH
Confidence 24689999999999999887652 233568888888877654332211210 111121110 00 0
Q ss_pred ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhh
Q 043923 172 QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250 (469)
Q Consensus 172 ~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~ 250 (469)
..+++.+++.+++. ....++.+|++....+..|. +++.+.+++|.++|++||+++|.||+|.++.+.+.. .+...+
T Consensus 180 ~~~~~~l~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~-~~~~~~- 256 (421)
T PRK06777 180 EEALSSVERLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKL-FAMEYY- 256 (421)
T ss_pred HHHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCch-hhhhhc-
Confidence 01245566655421 01235666665544677885 689999999999999999999999999985444431 121111
Q ss_pred hccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHH
Q 043923 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISE 328 (469)
Q Consensus 251 ~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 328 (469)
. ..+.++ ++||.+| +|+|+||+++++ .+.+.+.... ..+..+++++.++.+.|+... + +.
T Consensus 257 ~--------~~pDiv---~~sK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~---~--~~ 318 (421)
T PRK06777 257 D--------VKPDLI---TMAKSLG-GGMPISAVVGRA-EVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIA---E--EK 318 (421)
T ss_pred C--------CCCCEE---eeehhhc-CCCceEEEEEcH-HHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHH---h--cc
Confidence 1 112322 7999999 999999999954 4544443221 122367888888888875321 1 23
Q ss_pred HHHHHHHHHHHHHHHHHhc----C-CceecCCceEEEEEeccccc-ccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 329 NKKRLKQRHRKLVSGLEKA----G-ISCLKSNAGLFCWVDMRHLL-RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 329 ~~~~l~~~~~~l~~~L~~~----g-~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
..++++++.+++.+.|+++ + +....+.|.+| .+.+.... ..........+...+ .++||.+.|+..|+
T Consensus 319 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~-~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~~~~~~g---- 392 (421)
T PRK06777 319 LCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMV-AVEFNDPQTGKPSPEFTRQYQRQA-LEEGLLLLSCGVHG---- 392 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEE-EEEEecCccCCccHHHHHHHHHHH-HhCCeEEeecCCCC----
Confidence 4455556666666666654 2 23345666555 44443211 011111122333334 46799999987663
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 403 GWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 403 ~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
+++|+++.. ++++++++++++|.+++.
T Consensus 393 ~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 393 NVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 589999965 599999999999999874
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-17 Score=155.49 Aligned_cols=331 Identities=15% Similarity=0.127 Sum_probs=205.8
Q ss_pred eeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCCh
Q 043923 41 IQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120 (469)
Q Consensus 41 i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~ 120 (469)
++|..+.-.-+.+.+.+++.+... ....-|+..+-...+.+.+++.++ .+.++++.++
T Consensus 2 ~~f~SDn~~g~~~~m~eam~~a~~------------~~~~~YG~D~~~~~~e~~~ae~~g----------~~a~~Fv~sG 59 (342)
T COG2008 2 IDFRSDNVAGPTPEMREALAAANA------------VGDDVYGEDPTTNALEQRIAELFG----------KEAALFVPSG 59 (342)
T ss_pred CccccCccCCCCHHHHHHHHhccc------------cCCCCCCCCHHHHHHHHHHHHHhC----------CceEEEecCc
Confidence 566666555676777777776421 122346555444455555555443 3889999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEccCCCcChHHH--HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe
Q 043923 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRD--LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198 (469)
Q Consensus 121 ~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~ 198 (469)
|++..+++.+.++||+.|++..-.|-...+. +....+... ++..+..+..+++++++.++....-....+.++++.
T Consensus 60 T~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~--~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e 137 (342)
T COG2008 60 TQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQK--LPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLE 137 (342)
T ss_pred cHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcCCce--eccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEe
Confidence 9999999999999999999998877543322 222212222 233333445789999999887511122345566666
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc
Q 043923 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG 278 (469)
Q Consensus 199 ~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 278 (469)
|++|-.|.++|.+++++|.++|+++|+.+..|.+...-...... ++..++.. ...++..++||..+.|
T Consensus 138 ~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg-~~~~~~~~----------~~D~v~~~~tK~g~~~- 205 (342)
T COG2008 138 NTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG-VALKTIKS----------YVDSVSFCLTKGGGAP- 205 (342)
T ss_pred eccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC-CCHHHHHh----------hCCEEEEecccCCcce-
Confidence 67668899999999999999999999999999987421111111 34444422 3445556899988766
Q ss_pred ceEEEEEecCHHHHHHHHHh---cccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHH-HHHHHHHHHHHHhc-CCcee
Q 043923 279 FRVGAIYSNDDMVVAAATKM---SSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRL-KQRHRKLVSGLEKA-GISCL 352 (469)
Q Consensus 279 lRiG~li~~~~~~~~~~~~~---~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l-~~~~~~l~~~L~~~-g~~v~ 352 (469)
+|.|+.-+..+.+.+... ...+ .-+.+.......+|++.-| + ..++. .+....|.+.|+.. |+++.
T Consensus 206 --~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~----~--~~~~Han~mA~~La~~~~~~~G~~~~ 277 (342)
T COG2008 206 --VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVW----R--LAADHANAMAARLAEGLEAKPGVKLA 277 (342)
T ss_pred --eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHH----H--HHHHHHHHHHHHHHHhhhhcCCceec
Confidence 498887676665544332 2222 1223444444555665433 1 11111 11256688888854 99988
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
.+.-.+.+++.+++..- +... ....+.+.|+.+.++. .-+|+..+. ++++++++++..+++++
T Consensus 278 ~~~~tN~vf~~l~~~~i-----~~l~-~~~~~~~~~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 278 FPVETNMVFVRLPESAI-----EALR-LAGALFYRGVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred cCCcccEEEEECChHHH-----HHHH-hhchhheeeeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 76556899999985210 1111 1112223344443322 369998877 69999999999998865
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-17 Score=164.78 Aligned_cols=346 Identities=15% Similarity=0.125 Sum_probs=204.3
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHH----HHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAF----KKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~L----r~aia~~l~~~~~~~~~~~~~~ 113 (469)
...|+|...||..++................ + ......|........+ |+.++++++ .++++
T Consensus 34 ~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~---g---~p~s~~~~g~~~~~~iE~~ar~~~a~lf~--------a~~~~ 99 (452)
T PTZ00094 34 IEGLELIASENFTSRAVLECLGSCFTNKYAE---G---LPGNRYYGGNEVVDKIENLCQKRALEAFG--------LDPEE 99 (452)
T ss_pred HcCeeEecccccCCHHHHHHhcchhhccccC---C---CCCccccccchHHHHHHHHHHHHHHHHhC--------CCccc
Confidence 3569999999998876444333322111000 0 0011112222222333 345666664 46777
Q ss_pred EEEe---CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhh---------CCCEEEEeeccCCCCcccCHHHHHHH
Q 043923 114 IVLT---AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWR---------TGVEIVPIQCTSLNGFQITETAIEEA 181 (469)
Q Consensus 114 i~~t---~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~---------~g~~~~~v~~~~~~~~~~d~~~l~~~ 181 (469)
+.++ +|+++++..++.+++++||.|++....|..+....... .+.++..++++. +..+|++++++.
T Consensus 100 ~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~id~~~L~~~ 177 (452)
T PTZ00094 100 WGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE--KGLIDYDKLEEL 177 (452)
T ss_pred ceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC--CCCcCHHHHHHH
Confidence 7666 78999999999999999999999877776654332110 013344555553 246899999999
Q ss_pred HHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcC
Q 043923 182 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261 (469)
Q Consensus 182 i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 261 (469)
+++. ++++|++. ++.+|...+.++ |.++|+++|+++++|++++-.......... + ..
T Consensus 178 l~~~-----~~~lvi~~--~s~~g~~~di~~---I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~-----~--------~~ 234 (452)
T PTZ00094 178 AKAF-----RPKLIIAG--ASAYPRDIDYKR---FREICDSVGAYLMADIAHTSGLVAAGVLPS-----P--------FP 234 (452)
T ss_pred HHHh-----CCCEEEEe--CCCCCCccCHHH---HHHHHHHcCCEEEEeccchhccccCCCCCC-----C--------CC
Confidence 8642 56666654 334999988665 777888999999999999743222211010 0 11
Q ss_pred CeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-----cc-ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 043923 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----SF-GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 262 ~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 335 (469)
+..+++.|.+|+++ |.+.|++++.+........... .+ ++.+.....++.++++... ....+..++++.+
T Consensus 235 ~~D~l~~S~hK~l~--GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~--~~~~~~~~~~i~~ 310 (452)
T PTZ00094 235 YADVVTTTTHKSLR--GPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQ--SPEWKEYAKQVLK 310 (452)
T ss_pred CCcEEEcCCccCCC--CCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHh--ChhHHHHHHHHHH
Confidence 35578899999873 2334888875432221111111 11 1223333333333333211 1123556678888
Q ss_pred HHHHHHHHHHhcCCceecCCc-eEEEEEecccccccCChhHHHHHHHHHHHhCCeEE-eCCCCCCC--CCCCeEEEEeec
Q 043923 336 RHRKLVSGLEKAGISCLKSNA-GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNI-SPGSSCHC--TEPGWFRVCFAN 411 (469)
Q Consensus 336 ~~~~l~~~L~~~g~~v~~~~~-g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v-~pg~~f~~--~~~~~iRi~~~~ 411 (469)
+.++|.+.|.+.|+++..+.. ...+.+.+.... . +.+.+..+|+++||.+ .++..+.. ..++.+|+++..
T Consensus 311 l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~-----~-~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~ 384 (452)
T PTZ00094 311 NAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFG-----I-TGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPA 384 (452)
T ss_pred HHHHHHHHHHhCCcEEecCCCCCceEeecCCcCC-----C-CHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHH
Confidence 889999999888887764221 223444543211 0 1124555667789999 45544332 235789999965
Q ss_pred C-----CHHHHHHHHHHHHHHHHhhc
Q 043923 412 M-----SEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 412 ~-----~~e~i~~~l~~L~~~l~~~~ 432 (469)
. +++|++++++.|.++++...
T Consensus 385 ~tt~g~~~~di~~l~~~l~~~~~~~~ 410 (452)
T PTZ00094 385 LTTRGAKEKDFKFVADFLDRAVKLAQ 410 (452)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4 38999999999999998643
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-16 Score=161.25 Aligned_cols=309 Identities=17% Similarity=0.134 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCChH-HHHHHHHHHhcC---CCCEEEEccCCCcChHHHHhhhCCCEEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGAT-SANETLMFCLAE---PGEAFLLPTPYYPGFDRDLKWRTGVEIVP 162 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G~~-~al~~~~~~l~~---~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~ 162 (469)
...|.+.+.+.+.+.+| ++ .+..++++|+| .++.+++.++.. +||.|+++.-+|.....++... |++++.
T Consensus 103 ~~~l~~~~e~~~~~~~G----~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~-G~~pv~ 177 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLG----LRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTA-GFEPRV 177 (444)
T ss_pred HHHHHHHHHHHHHHHcC----CCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHc-CCeEEE
Confidence 34555555555555444 32 24688888888 688888777642 5899999999999888888887 999999
Q ss_pred eec-cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 163 IQC-TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 163 v~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
++. ..++.|.+|+++++++|++. +++..++++.+|+ |+.....+++++|+++|++||+++|+|++|+. ...
T Consensus 178 Vd~~~d~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~---~~~ 249 (444)
T TIGR03531 178 IETVLDGDELTTDVEDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGL---QSN 249 (444)
T ss_pred eeeeecCcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcC---cCh
Confidence 995 23467999999999999852 1245566777665 56556677888999999999999999999983 111
Q ss_pred Cccchhhhhh-ccccccCCcCC-eEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCc
Q 043923 242 GFVSIMEILK-DRNCENTQVWN-RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDK 319 (469)
Q Consensus 242 ~~~s~~~~~~-~~~~~~~~~~~-~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 319 (469)
....+.. .. ..+ ..+++.|++|.+.++|. .|.++++++.+.+.+.........+++.+.+...++..+
T Consensus 250 ---~~~~~~~~g~------~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G 319 (444)
T TIGR03531 250 ---KYMELINKAI------KVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG 319 (444)
T ss_pred ---hhhhhhhccc------cccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC
Confidence 1111111 00 112 25667899999988776 344447566666655544332224456777766666543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCce-EEEEEecccccccCChhHHHHHHHHHHHhCCe---E-
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAG-LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKL---N- 390 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g-~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI---~- 390 (469)
.+.+++..++..++++++.+.|+++ |.++.....+ .-+.+.+.... . .+... .-.+|...+| .
T Consensus 320 ---~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-~---~~~~~-~g~~l~~~~v~g~r~ 391 (444)
T TIGR03531 320 ---SKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-G---KDPTM-LGSMLYSRRVTGPRV 391 (444)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-c---cCHHH-HHHHHHhCCCCCcee
Confidence 4556777777777888888877764 6666644322 23344444321 1 11223 3334444455 2
Q ss_pred EeCCC-------CC---CCCCC----CeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 391 ISPGS-------SC---HCTEP----GWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 391 v~pg~-------~f---~~~~~----~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
|.||. .| +...+ .|+-++-+- ++++|++.++++|.++
T Consensus 392 v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 392 VTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred ecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 34555 22 22111 144332221 5899999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-16 Score=160.09 Aligned_cols=358 Identities=13% Similarity=0.048 Sum_probs=198.7
Q ss_pred CCCCCCCCCeeeeeccc--cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCC
Q 043923 31 YDEVQNPTGIIQMGLAE--NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNK 106 (469)
Q Consensus 31 ~~~~~~~~~~i~L~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~ 106 (469)
|........+||+..+. ..+. .+.+.+++++..+ ....+.......+....+|+.+.+...
T Consensus 33 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~l~~~~~~~~~~~~~~~la~~l~~~~p-- 97 (425)
T PRK07495 33 EIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLD-------------RFTHTCHQVVPYENYVRLAERLNALVP-- 97 (425)
T ss_pred EEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHh-------------hccCcccCccCCHHHHHHHHHHHHhCC--
Confidence 33334445689987652 3343 4666666665321 111111101112344445555554321
Q ss_pred CCCC-CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCCCC
Q 043923 107 VTFD-TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSLNG 170 (469)
Q Consensus 107 ~~~~-~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~~ 170 (469)
-. .+.+++++++++|+..+++... .....|+.....|++.........|. .++.+|.+...
T Consensus 98 --~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (425)
T PRK07495 98 --GDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL- 174 (425)
T ss_pred --CCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-
Confidence 11 2689999999999999988652 23457888888887764222111010 22333332110
Q ss_pred cccC----HHHHHHHHHHHHhcCCceeEEEEecC-CCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 171 FQIT----ETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLG-TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 171 ~~~d----~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
...+ ++.+++.++.. ....++.+|++..- +| +| ..+|.+.+++|.++|++||+++|+||+|.++...+.. .
T Consensus 175 ~g~~~~~~~~~l~~~~~~~-~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~-~ 251 (425)
T PRK07495 175 HGVSVEQSLAALDKLFKAD-VDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKL-F 251 (425)
T ss_pred ccccHHHHHHHHHHHHHhc-cCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCc-e
Confidence 0122 33344444320 01235666555422 45 78 4579999999999999999999999999875333321 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHh---cCc
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALL---SDK 319 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l---~~~ 319 (469)
... ..+.+.-+.++||.++ +|+++|++++++ .+.+.+... ...+..+++++.++.+.+ .+.
T Consensus 252 a~~------------~~gv~pDi~tlsK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~ 317 (425)
T PRK07495 252 AME------------HHEVAADLTTMAKGLA-GGFPLAAVTGRA-EIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE 317 (425)
T ss_pred eec------------ccCCCCCEEeehhhhc-CCccceEEEEcH-HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 111 1123334668999998 999999999954 444433221 122236777777555544 333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccC-ChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSN-TFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~-~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
++ .++++++.++++++.+.+.+ +++........|+++|+.+....... .......+...+ .++||.+.+...
T Consensus 318 ~l-~~~~~~~g~~l~~~L~~l~~---~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~-~~~Gvl~~~~g~-- 390 (425)
T PRK07495 318 DL-CERANQLGNRLKQRLASLRE---TVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKA-LEKGLILLTCGV-- 390 (425)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHh---hCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHH-HHCCeEEeecCC--
Confidence 33 34444444444444333322 22221111122799999985421111 111122344444 467999975321
Q ss_pred CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 399 CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 399 ~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
..+.+|+.... ++++++++++++|.+++++..
T Consensus 391 --~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 391 --HGNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred --CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 13679999876 499999999999999998654
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=162.31 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=121.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~v 163 (469)
..+|++.+|++.+ .+..++++++++|+..++.+++++||.|+++.+.|...... +... |++++.+
T Consensus 65 ~~~le~~lA~l~g----------~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~-G~~v~~v 133 (427)
T PRK05994 65 NAVLEERVAALEG----------GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSF-GWQVRWA 133 (427)
T ss_pred HHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhc-CcEEEEE
Confidence 5788899998875 33477889999999999999999999999999999865432 4445 9999888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+.+ |++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+... ...
T Consensus 134 d~~-------d~~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~-~~~-- 194 (427)
T PRK05994 134 DAD-------DPASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPY-LIR-- 194 (427)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccc-cCC--
Confidence 743 67888888864 7999999999999999998 5568888999999999999997421 111
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEe
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS 286 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~ 286 (469)
+ + ..+..+++.|++|.+|-+|-.+|.+++
T Consensus 195 -p---l----------~~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 195 -P---I----------EHGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred -c---c----------ccCCcEEEEcCccccCCCCCcEEEEEE
Confidence 1 1 124558889999999866766666554
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.5e-16 Score=149.48 Aligned_cols=305 Identities=18% Similarity=0.230 Sum_probs=219.4
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (469)
...+-+.+.+.++..++ .+ .+-++++.+++.+++.++..+++|||+|++......+ +...++.. |++++.+.
T Consensus 36 F~~~~~~~~~~L~~v~~----t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~-g~~v~~~~ 110 (383)
T COG0075 36 FVGIMKEVLEKLRKVFG----TENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERY-GAEVVVLE 110 (383)
T ss_pred HHHHHHHHHHHHHHHhc----CCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHh-CCceEEEe
Confidence 35555555555555544 33 3556778889999999999999999999998876544 34556666 99999988
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
... +-.+|+++++++|++ ++..++|.+++.-.+||...| +++|+++|++||.++|+|.+-+ +++.+.
T Consensus 111 ~~w--g~~v~p~~v~~~L~~----~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~~~- 177 (383)
T COG0075 111 VEW--GEAVDPEEVEEALDK----DPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGEPL- 177 (383)
T ss_pred CCC--CCCCCHHHHHHHHhc----CCCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCccc-
Confidence 763 345899999999984 457888999988889999998 5558889999999999999988 676652
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH------------------H-hcccccCc
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT------------------K-MSSFGLVS 305 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~------------------~-~~~~~~~s 305 (469)
.+ +.++..+++.+--|.+++| -.+|++..+++.+..... + ...+.+++
T Consensus 178 ~v------------d~wgiDv~itgSQK~l~~P-PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tpp 244 (383)
T COG0075 178 KV------------DEWGIDVAITGSQKALGAP-PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPP 244 (383)
T ss_pred ch------------hhcCccEEEecCchhccCC-CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCC
Confidence 22 2457888899999999853 357777776554433211 1 11223345
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecccccccCChhHHHHHHHH
Q 043923 306 SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELWKK 382 (469)
Q Consensus 306 ~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~~~ 382 (469)
....+++..+|+... .+-++.+.+++++..+++++.++.+|++....+ +.....+.+|...+. .+....
T Consensus 245 v~~i~aL~~al~~i~--~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~------~~~~~~ 316 (383)
T COG0075 245 VNLIYALREALDLIL--EEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDD------KKVRRA 316 (383)
T ss_pred HHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCc------HHHHHH
Confidence 555566666665432 334688889999999999999999999877622 223445666654432 123447
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+++++||.+.+|. +......+||+.-. .+.+++..++.+|..++++..-
T Consensus 317 ~~~~~g~~i~gg~--~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 317 LLKEYGVEIAGGQ--GPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred HHHhCCEEecccc--cccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 8888899998774 44456789998744 6999999999999999988765
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=160.16 Aligned_cols=288 Identities=16% Similarity=0.173 Sum_probs=181.4
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~ 162 (469)
....|++.+|++++ .+..+++++++.|+..++.+++++||.|++....|.+.... +... |++++.
T Consensus 70 ~~~~Le~~lA~l~g----------~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~-Gi~v~~ 138 (436)
T PRK07812 70 TQDVVEQRIAALEG----------GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKL-GIEVSF 138 (436)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcC-eEEEEE
Confidence 35788888888875 34467778888899999999999999999999888776543 2334 888887
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++ +. .|++++++++++ ++++|++.+|+||+|.+.+.++ |.++|+++|+++|+|++++....
T Consensus 139 vd-d~-----~d~e~l~~ai~~------~tklV~ie~~sNp~G~v~Dl~~---I~~la~~~gi~liVD~t~a~~~~---- 199 (436)
T PRK07812 139 VE-DP-----DDLDAWRAAVRP------NTKAFFAETISNPQIDVLDIPG---VAEVAHEAGVPLIVDNTIATPYL---- 199 (436)
T ss_pred EC-CC-----CCHHHHHHhCCC------CCeEEEEECCCCCCCeecCHHH---HHHHHHHcCCEEEEECCCccccc----
Confidence 75 21 278888888764 7899999999999999999554 88888899999999999863211
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH-------------------------------
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV------------------------------- 291 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~------------------------------- 291 (469)
.... ..+..+++.|++|.+|-.|--+|.+++.....
T Consensus 200 -~~pl------------~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (436)
T PRK07812 200 -IRPL------------EHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYA 266 (436)
T ss_pred -CCch------------hcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHH
Confidence 1111 12455778999999987776677776632110
Q ss_pred HHHH-HHhcccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ceecC-------------
Q 043923 292 VAAA-TKMSSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GI-SCLKS------------- 354 (469)
Q Consensus 292 ~~~~-~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~-~v~~~------------- 354 (469)
.+.. ......+ .+++...+.+.+-|+. +..+.++..++...+.+.|+++ ++ +|.-|
T Consensus 267 ~~~~~~~~~~~G~~l~p~~a~l~~rgl~t-------L~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~ 339 (436)
T PRK07812 267 LKARVQLLRDLGSAISPFNAFLIAQGLET-------LSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKR 339 (436)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhcCcCc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHH
Confidence 0111 1111222 2445444444443333 4555666677888899999887 33 22211
Q ss_pred ----CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC------------C---------CCCCeEEEEe
Q 043923 355 ----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH------------C---------TEPGWFRVCF 409 (469)
Q Consensus 355 ----~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~------------~---------~~~~~iRi~~ 409 (469)
..|-.+.+++.+.. +....++.. ++-..+.+.-|.... . -.++.||||+
T Consensus 340 ~~~~g~gg~~sf~l~~~~-----~~~~~f~~~-l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSv 413 (436)
T PRK07812 340 LAPKGTGAVLSFELAGGV-----EAGKAFVNA-LTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAV 413 (436)
T ss_pred hCcCCCceEEEEEecCCH-----HHHHHHHHh-CCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEe
Confidence 12345556664210 111222222 211122221121111 0 1145799999
Q ss_pred ecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 410 ANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 410 ~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+. |+.+.+++.|+++++..++
T Consensus 414 Gl---Ed~~dli~dl~~Al~~~~~ 434 (436)
T PRK07812 414 GI---EGIDDILADLEAGFAAAKA 434 (436)
T ss_pred cc---CCHHHHHHHHHHHHHhhhc
Confidence 95 6678888888888876654
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=148.31 Aligned_cols=343 Identities=13% Similarity=0.093 Sum_probs=211.7
Q ss_pred CCCCCCeeeeecccccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 34 VQNPTGIIQMGLAENQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 34 ~~~~~~~i~L~~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
.....++++|+.|.--- ..|.+.++-.+..+..-. |++...-++.|... +..|+..||+|.+ .
T Consensus 63 ~G~~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGa---GlssvrfIcGtq~i--Hk~LE~kiAqfh~----------r 127 (417)
T KOG1359|consen 63 KGSDKKILNFCANNYLGLSSHPEIINAGQKALEEYGA---GLSSVRFICGTQDI--HKLLESKIAQFHG----------R 127 (417)
T ss_pred eccccceeeecccccccccCChHHHHHHHHHHHHhCC---CccceeEEecchHH--HHHHHHHHHHHhC----------C
Confidence 34456788888764322 224443333332111111 12223445556544 5888999999985 4
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
|+.++.+.+-.|...++.++..|.|.|+...-.+-.....++.+ . . .-.+|+-.++..+.+..+ .+
T Consensus 128 ED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLc-k------r-----y~h~dv~~l~~~l~~a~k--~r 193 (417)
T KOG1359|consen 128 EDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLC-K------R-----YRHVDVFDLEHCLISACK--MR 193 (417)
T ss_pred CceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHH-h------h-----hccchhHHHHHHHHHhhh--he
Confidence 55566677777888888899999999999988888777766654 2 0 112566667766654322 15
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
.++|+...--...|.+.|.++ |.+++++||.++++||+|+..+++... ....+...- ..+..++.++++
T Consensus 194 ~klv~TDg~FSMDGdiaPl~e---i~~La~kYgaLlfiDecHaTgf~G~tG-rGt~E~~~v-------m~~vdiinsTLg 262 (417)
T KOG1359|consen 194 LKLVVTDGVFSMDGDIAPLEE---ISQLAKKYGALLFIDECHATGFFGETG-RGTAEEFGV-------MGDVDIINSTLG 262 (417)
T ss_pred EEEEEecceeccCCCcccHHH---HHHHHHhcCcEEEEeecccceeecCCC-CChHHHhCC-------CCcceehhhhhh
Confidence 565554444568899999555 788888999999999999988666433 233333321 346678889999
Q ss_pred cccC-CCcceEEEEEecCHHHHHHH-HHhcccccCcHHH---HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043923 272 KDLG-LPGFRVGAIYSNDDMVVAAA-TKMSSFGLVSSQT---QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK 346 (469)
Q Consensus 272 K~~g-~~GlRiG~li~~~~~~~~~~-~~~~~~~~~s~~~---q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 346 (469)
|++| +.| ||..+|.+.+ +.+ ++.++|...+++. ...+.+++... .. -....++.+.+.+++++.++.
T Consensus 263 KAlGga~G---Gyttgp~~li-~llrqr~RpylFSnslppavV~~a~ka~dll---m~-s~~~i~~~~a~~qrfr~~me~ 334 (417)
T KOG1359|consen 263 KALGGASG---GYTTGPKPLI-SLLRQRSRPYLFSNSLPPAVVGMAAKAYDLL---MV-SSKEIQSRQANTQRFREFMEA 334 (417)
T ss_pred hhhcCCCC---CCccCChhHH-HHHHhcCCceeecCCCChhhhhhhHHHHHHH---Hh-hHHHHHHHHHHHHHHHHHHHh
Confidence 9997 555 9999976654 444 3445554333222 11112221110 00 122334455666778888888
Q ss_pred cCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHH
Q 043923 347 AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRL 424 (469)
Q Consensus 347 ~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-~~~~~~iRi~~~~-~~~e~i~~~l~~L 424 (469)
.|+++..... +.+-+-+.+. .-......++|+. ||.|..-++.. +.+...+|+.++. +++++++++++++
T Consensus 335 aGftIsg~~h-PI~pv~lGda------~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af 406 (417)
T KOG1359|consen 335 AGFTISGASH-PICPVMLGDA------RLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAF 406 (417)
T ss_pred cCceecCCCC-CccceecccH------HHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHH
Confidence 8998876544 4444444432 2233566778854 99998544322 2234579999877 5999999999999
Q ss_pred HHHHHhhc
Q 043923 425 KAFVDSIT 432 (469)
Q Consensus 425 ~~~l~~~~ 432 (469)
.++.+...
T Consensus 407 ~~vgr~~~ 414 (417)
T KOG1359|consen 407 SEVGRFLN 414 (417)
T ss_pred HHHHHhhc
Confidence 99887554
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=153.30 Aligned_cols=333 Identities=17% Similarity=0.199 Sum_probs=207.8
Q ss_pred CCCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 34 VQNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 34 ~~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
+.+...+|||..| .|.+. +|.+.+++++..+. +...++ .-+.+.+.++|+.+.+.. +
T Consensus 38 D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~k----------l~h~sn----~~~~~~~~~la~~L~~~s----~- 98 (404)
T COG4992 38 DQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEK----------LWHVSN----LFYNEPQAELAEKLVELS----P- 98 (404)
T ss_pred CCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHH----------hhhccc----ccCChHHHHHHHHHHhhC----c-
Confidence 3445568998765 66664 57777777763221 111111 112455566666665331 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc---C-C-CCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCCcc
Q 043923 110 DTSKIVLTAGATSANETLMFCLA---E-P-GEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNGFQ 172 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~---~-~-gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~~ 172 (469)
..+.|+++|+++||++.++.... . + ..+|+.....|++-...+-...|- .+..+|++
T Consensus 99 ~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn------ 172 (404)
T COG4992 99 FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN------ 172 (404)
T ss_pred cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC------
Confidence 37899999999999999998753 2 2 236777777776543221111011 12223322
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhh
Q 043923 173 ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251 (469)
Q Consensus 173 ~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~ 251 (469)
|++++++++++ ++.+|++.--+--.|.. .+.+-++++-++|.+||+++|.||+..++--.+. ++.+-.
T Consensus 173 -Di~al~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk----~fA~e~ 241 (404)
T COG4992 173 -DIEALEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK----LFAYEH 241 (404)
T ss_pred -CHHHHHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch----HHHHHH
Confidence 88999999986 88888877557777865 4667789999999999999999999998432232 221111
Q ss_pred ccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh---cccccCcHHHHHHHHHHhcCchhhHHHHHH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---SSFGLVSSQTQYLLSALLSDKKFTQNYISE 328 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 328 (469)
. +..+.++ ++.|.+| .|+.+|.+++. ..+...+... ++|+ .++++..++.+.|+-... +.
T Consensus 242 ~------gV~PDI~---tlaK~Lg-GG~PigA~la~-~~~~~~~~~G~HgSTfG-GNpLacAv~~a~l~~l~~-----e~ 304 (404)
T COG4992 242 Y------GVEPDIL---TLAKALG-GGFPIGAMLAT-EEIASAFTPGDHGSTFG-GNPLACAVALAVLEVLLE-----EG 304 (404)
T ss_pred h------CCCCCEE---Eeecccc-CCccceeeEEc-hhhhhcCCCCcccCCCC-cCHHHHHHHHHHHHHHcc-----hh
Confidence 0 1223333 7889999 99999999995 4444433221 2333 677777777666653221 12
Q ss_pred HHHHHHHHHHHHHHHHHhc----C-CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 329 NKKRLKQRHRKLVSGLEKA----G-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 329 ~~~~l~~~~~~l~~~L~~~----g-~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
..+..++.-++|.+.|+++ + ++-... -|+++-+.+..... ..+++..+ +++|+++.+.. ++
T Consensus 305 ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG-~GLmiGiel~~~~~------a~~~~~~~-~~~gvL~~~a~------~~ 370 (404)
T COG4992 305 LLENVREKGEYLLQRLRELKRRYPLVKEVRG-RGLMIGIELKEPYR------ARDIVRAL-REEGVLVLPAG------PN 370 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceeeeec-ceeEEEEEecCccc------HHHHHHHH-HHCCeEEecCC------CC
Confidence 2333344445555556554 2 111222 35888888875321 12345544 57799998653 56
Q ss_pred eEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 404 WFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 404 ~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+|+.... ++++++++++++|+++++....
T Consensus 371 ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 371 VIRFLPPLVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred eEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 89999987 4999999999999999986544
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-16 Score=158.47 Aligned_cols=297 Identities=12% Similarity=0.038 Sum_probs=170.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCCCC--cc-
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSLNG--FQ- 172 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~~--~~- 172 (469)
.+.+++++++++|+..+++... .....|+...-.|++.........+. .+..+|...... ..
T Consensus 103 ~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (433)
T PRK08117 103 LDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGE 182 (433)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccC
Confidence 4689999999999999988632 22356777777776653322110010 112222221000 00
Q ss_pred -------cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 173 -------ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 173 -------~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+++.++..+++.. ...++.+|++..-....|.+ .+.+.+++|.++|++||+++|+||+|.++...+..+.
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~ 261 (433)
T PRK08117 183 DPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA 261 (433)
T ss_pred chhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchh
Confidence 13455555554211 12256655554335556765 5789999999999999999999999997433333211
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhh
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~ 322 (469)
.+.. +...-+.|+||++| +|+++|+++++++ +.+.+.... .....+++++.++.+.|+....
T Consensus 262 --~~~~-----------gv~pDi~t~sK~lg-~G~pigav~~~~~-i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~- 325 (433)
T PRK08117 262 --AQTF-----------GVVPDIMTIAKGIA-SGLPLSAVVASKE-LMEQWPLGSHGTTFGGNPVACAAALATLEVIKE- 325 (433)
T ss_pred --Hhhc-----------CCCCCEeehhhhcc-CCCcceeEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh-
Confidence 1111 11112359999999 9999999999544 444332211 1123577787777777753211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
+...+.+++..+++.+.|+++ ++.......|.++++.+..............++.. +.++||.+.+...
T Consensus 326 ----~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~g~-- 398 (433)
T PRK08117 326 ----EKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDK-CLEKGLLFYLCGN-- 398 (433)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHH-HHHCCCEEeecCC--
Confidence 122333333344444444443 32222334457777877532111111122334444 4567999876321
Q ss_pred CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 399 CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 399 ~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..+.+|++++. ++++++++++++|.+++++..+
T Consensus 399 --~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 399 --AGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred --CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence 24689999754 5999999999999999976643
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-16 Score=159.35 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=124.3
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
-..+|++.+|++.+ .+..++++++++|+.+++.+++++||.|+++...|......+ ... |++++.
T Consensus 65 ~~~~le~~lA~l~g----------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~-Gi~v~~ 133 (433)
T PRK08134 65 TVAVLEERVAALEG----------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRF-GIETTF 133 (433)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhC-CeEEEE
Confidence 36889999998885 234688999999999999999999999999999998765443 334 999998
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+ |+++++++|++ ++++|++.+|+||+|.+.+. ++|.++|+++|+++|+|.+++.... .
T Consensus 134 vd~~-------d~~~l~~~i~~------~TklV~~e~~~np~g~v~Di---~~I~~la~~~gi~livD~t~a~~~~-~-- 194 (433)
T PRK08134 134 VKPG-------DIDGWRAAIRP------NTRLLFGETLGNPGLEVLDI---PTVAAIAHEAGVPLLVDSTFTTPYL-L-- 194 (433)
T ss_pred ECCC-------CHHHHHHhcCC------CCeEEEEECCCcccCcccCH---HHHHHHHHHcCCEEEEECCCccccc-C--
Confidence 8753 68899998875 89999999999999999984 5588888999999999999864322 1
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEe
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS 286 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~ 286 (469)
.+ ..+ +..+++.|.+|.+|-+|-.+|.+++
T Consensus 195 -~p-l~~------------GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 195 -RP-FEH------------GADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred -Cc-hhc------------CCCEEEeccccccCCCCCceEEEEE
Confidence 11 112 4568889999999877877777655
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=155.18 Aligned_cols=211 Identities=18% Similarity=0.188 Sum_probs=153.3
Q ss_pred CCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 35 QNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 35 ~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
..+.+.+.|+.+.-...++.+.+++........-.|+. . ...|-...+.++-|+.+|++++ .++++|
T Consensus 39 ~~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~----~-~y~w~~~~~~E~aR~~VAklIn--------Ad~~dI 105 (428)
T KOG1549|consen 39 HHGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHS----R-SYGWKAEDAVEAAREQVAKLIN--------ADPSDI 105 (428)
T ss_pred cCCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCc----c-ccchhhhHHHHHHHHHHHHHhC--------CCCCcE
Confidence 34556788877644443444444444321110111100 0 1112222347888999999997 678789
Q ss_pred EEeCChHHHHHHHHHHhc-CCCC----EEEEccCCCcChHHHHh---hhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLA-EPGE----AFLLPTPYYPGFDRDLK---WRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~-~~gd----~Vl~~~P~y~~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
++|+|+|+++.++++.+. ..+| .|++..-.|++....+. .. |+++..+|++ ++...|.+.++..|++
T Consensus 106 iFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~-g~~Vt~lpv~--~~~~~d~~~~~~~i~~-- 180 (428)
T KOG1549|consen 106 VFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEE-GLEVTYLPVE--DSGLVDISKLREAIRS-- 180 (428)
T ss_pred EEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhc-CeEEEEeccC--ccccccHHHHHHhcCC--
Confidence 999999999999999973 3556 89999999988765544 34 8999999988 3456789999999987
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++++|.+..-+|-+|+++|.+| |.++|+++++++++|.+++ .+.. .....++ +...+
T Consensus 181 ----~T~lv~I~~Vnn~~gv~~Pv~E---I~~icr~~~v~v~~DaAQa---vG~i-~vDV~el------------n~D~~ 237 (428)
T KOG1549|consen 181 ----KTRLVSIMHVNNEIGVLQPVKE---IVKICREEGVQVHVDAAQA---VGKI-PVDVQEL------------NADFL 237 (428)
T ss_pred ----CceEEEEEecccCccccccHHH---HHHHhCcCCcEEEeehhhh---cCCc-cccHHHc------------Cchhe
Confidence 9999999999999999999665 8999999999999999997 3332 2454444 44566
Q ss_pred EccCccccCCCcceEEEEEecC
Q 043923 267 VYSLSKDLGLPGFRVGAIYSND 288 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~ 288 (469)
..|.+|+||.+| +|++.+..
T Consensus 238 s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 238 SISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred eeecccccCCCc--ceEEEEcc
Confidence 679999999999 99999864
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-16 Score=155.90 Aligned_cols=283 Identities=19% Similarity=0.234 Sum_probs=180.3
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhh---hCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKW---RTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (469)
...|+++||+..+ .+.+++++++..|+..++.+++++||.|+++...|.+....+.. ..|+++..++
T Consensus 57 ~~~le~~la~Le~----------g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d 126 (386)
T PF01053_consen 57 VRALEQRLAALEG----------GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVD 126 (386)
T ss_dssp HHHHHHHHHHHHT-----------SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEES
T ss_pred HHHHHHHHHHhhc----------ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeC
Confidence 4667777777764 57789999999999999999999999999999999887655543 1399998886
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC-eEEEEeccccccccCCCCc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN-IHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~-~~iI~Deay~~~~~~~~~~ 243 (469)
.. |++++++++++ ++++|++..|.||+..+.+ +++++++|+++| +++|+|..++..++
T Consensus 127 ~~-------d~~~l~~~l~~------~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~----- 185 (386)
T PF01053_consen 127 PT-------DLEALEAALRP------NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYN----- 185 (386)
T ss_dssp TT-------SHHHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTT-----
T ss_pred ch-------hHHHHHhhccc------cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceee-----
Confidence 42 78999999876 8999999999999988877 666888999998 99999999975321
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecC-HHHHHHHHHh-cccc-cCcHHHHHHHHHHhcCc
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSND-DMVVAAATKM-SSFG-LVSSQTQYLLSALLSDK 319 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~-~~~~~~~~~~-~~~~-~~s~~~q~~~~~~l~~~ 319 (469)
.... ..+..+++.|++|.++ ...+=.|.+++++ ..+...++.. ...+ .+++...+.+.+-++.
T Consensus 186 ~~pL------------~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T- 252 (386)
T PF01053_consen 186 QNPL------------ELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRT- 252 (386)
T ss_dssp C-GG------------GGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-
T ss_pred eccC------------cCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCc-
Confidence 1112 2256688999999884 3445568888765 4454443332 2233 3556666666666655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecC----------------CceEEEEEecccccccCChhHHHHHHH
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKS----------------NAGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~----------------~~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
+.-+.++..++...+.+.|+++ .++ |.-| .+|-.+.+.++... +....++.
T Consensus 253 ------l~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~-----~~~~~f~~ 321 (386)
T PF01053_consen 253 ------LPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE-----EAARRFLD 321 (386)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH-----HHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch-----hhhHhHHh
Confidence 3455666777888899999987 232 3222 22236677777532 11122222
Q ss_pred HHHHhCCeEE----------eCCCCCCC-----------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 382 KIVYDVKLNI----------SPGSSCHC-----------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 382 ~ll~~~GI~v----------~pg~~f~~-----------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.+ +-.++.+ .|...-.. -.++.+|||++. |+.+.+++.|+++++
T Consensus 322 ~l-~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 322 AL-KLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE 386 (386)
T ss_dssp H--SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred hh-hhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence 22 2111111 12211000 124689999995 678888888888875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-15 Score=155.16 Aligned_cols=351 Identities=15% Similarity=0.093 Sum_probs=198.0
Q ss_pred CCCCCCeeeeecc--cccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 34 VQNPTGIIQMGLA--ENQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 34 ~~~~~~~i~L~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
......+||+..+ ...+ ..+.+.+++++..+. ...... .....+.+..+|+.+.+....+-..
T Consensus 31 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~----------~~~~~~---~~~~~~~~~~lae~l~~~~~~~~~~ 97 (412)
T TIGR02407 31 DEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLAD----------DGIIHS---LDMATEAKREFLETFNEIILKPRGL 97 (412)
T ss_pred eCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh----------ccceec---cccCcHHHHHHHHHHHHhccCccCC
Confidence 3344568898765 3334 346666766653110 000111 1111344555666654321000001
Q ss_pred CCCcEEE-eCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCCc-cc
Q 043923 110 DTSKIVL-TAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNGF-QI 173 (469)
Q Consensus 110 ~~~~i~~-t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~-~~ 173 (469)
.+.+++ ++++++|+..+++... ....+|+....+|++....+....|. .++.+|.+..... .-
T Consensus 98 -~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 176 (412)
T TIGR02407 98 -DYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVD 176 (412)
T ss_pred -CceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchh
Confidence 124655 5899999999988753 23467888888888765433221121 2233333210000 01
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc-chhhhhh
Q 043923 174 TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV-SIMEILK 251 (469)
Q Consensus 174 d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~-s~~~~~~ 251 (469)
+++.+++.+++......++.+|++..-.++.|. ..|.+.+++|.++|++||+++|+||++.++.-.+..+. ....+
T Consensus 177 ~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v-- 254 (412)
T TIGR02407 177 TIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI-- 254 (412)
T ss_pred HHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC--
Confidence 356677776532111125666665544788898 67999999999999999999999999986422221110 01111
Q ss_pred ccccccCCcCCeEEEEccCccccCCC-cceEEEEEecCHHHHHHHHHh---cccccCcHHHHHHHH---H-HhcCchhhH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDDMVVAAATKM---SSFGLVSSQTQYLLS---A-LLSDKKFTQ 323 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~-GlRiG~li~~~~~~~~~~~~~---~~~~~~s~~~q~~~~---~-~l~~~~~~~ 323 (469)
. +.+ .++||.+| + |+|+|+++++++ + ..+... .++ ..++++..++. . ++.++++ .
T Consensus 255 --------~-PDi---~~~~K~lg-~~G~pigav~~~~~-~-~~~~~~~~~~T~-~gnpl~~aaa~a~l~~~i~~~~l-~ 317 (412)
T TIGR02407 255 --------E-PDI---VCLSKSIS-GYGLPLALTLIKPE-L-DVWKPGEHNGTF-RGNNLAFVTATAALEYYWSDDAF-E 317 (412)
T ss_pred --------C-CCE---EEechhcc-CCccceeEEEEchh-h-hccCCCccCCCC-CccHHHHHHHHHHHHHHhcccHH-H
Confidence 1 222 26889998 7 999999999654 3 222211 122 24455333323 3 3445444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
+++++..++++++.+.+.+.+.. +.+.....|+++|+.++.. .....+...++ ++||.+.+...+ .+
T Consensus 318 ~~~~~~g~~l~~~l~~l~~~~~~--~~~~vrg~Gl~~~l~l~~~------~~~~~~~~~~~-~~Gv~v~~~~~~----~~ 384 (412)
T TIGR02407 318 KAVQRKSEIIQERLDRIVAEYPE--LIKQVRGRGLMQGIECGDG------DLAGKIAKAAF-ENGLIIETSGPN----DE 384 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC--ceEeeecceeEEEEEecCh------HHHHHHHHHHH-HCCCEEeccCCC----CC
Confidence 55555555555554444333321 2233445679999999742 11224555554 679999875322 35
Q ss_pred eEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 404 WFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 404 ~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+|++... ++++++++++++|.+++++
T Consensus 385 ~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 385 VIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 79999987 5999999999999999864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-15 Score=156.52 Aligned_cols=350 Identities=13% Similarity=0.066 Sum_probs=196.1
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC-C
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD-T 111 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~-~ 111 (469)
...+||+..+ .+.+. .+.+.+++.+.. .....+.......+.+..+|+.+.+... .. .
T Consensus 55 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~p----~~~~ 117 (443)
T PRK06058 55 GNRLIDLGSGIAVTSVGNSAPRVVEAVREQV-------------ARFTHTCFMVTPYEGYVAVAEQLNRLTP----GDHE 117 (443)
T ss_pred CCEEEEcCcchhhhccCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCC----CCCC
Confidence 3457888765 33343 466666666531 1111122111234666677777765432 11 2
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCC--C--Ccc
Q 043923 112 SKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSL--N--GFQ 172 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~--~--~~~ 172 (469)
+.+++++++++|+..+++... ...+.|+...++|++....+....+. .+..+|.... . .+.
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLA 197 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccc
Confidence 578999999999999988432 23478999999998876443221111 1122221100 0 000
Q ss_pred cC-HHHHHHHHHHHHh--cCCceeEEEEecCCCCCC-CC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchh
Q 043923 173 IT-ETAIEEAYQLAQK--RHLKVKGVLVTNPSNPLG-TT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIM 247 (469)
Q Consensus 173 ~d-~~~l~~~i~~~~~--~~~~~~~vvl~~P~NPtG-~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~ 247 (469)
.+ .+.++..++...+ ...++.+|+ ..|.+..| .. .+.+.+++|.++|++||+++|.||++.++...+..+ . .
T Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f-a-~ 274 (443)
T PRK06058 198 TDGEEAAARAITVIEKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF-A-C 274 (443)
T ss_pred cchHHHHHHHHHHHHHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh-H-H
Confidence 11 1222222221111 123566544 56866554 43 468899999999999999999999998753333221 1 1
Q ss_pred hhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHH
Q 043923 248 EILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNY 325 (469)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~ 325 (469)
+... ..+.++ +++|.+| .|+++|++++++ .+.+.+.... ..+..+++++.++.+.|+... +
T Consensus 275 ~~~g--------v~PDiv---~~gK~l~-~G~Pi~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~--~-- 337 (443)
T PRK06058 275 EHEG--------IVPDLI---TTAKGIA-GGLPLSAVTGRA-EIMDAPHPGGLGGTYGGNPVACAAALAAIETIE--E-- 337 (443)
T ss_pred HhcC--------CCCCEE---EEccccc-CCCccEEEEEcH-HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH--H--
Confidence 1111 223333 5589999 999999999954 4544443221 122367888888877775321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCce-ecCCceEEEEEeccccc-ccCChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 326 ISENKKRLKQRHRKLVSGLEKA----GISC-LKSNAGLFCWVDMRHLL-RSNTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 326 ~~~~~~~l~~~~~~l~~~L~~~----g~~v-~~~~~g~~~~v~~~~~~-~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
+...+..+++.++|.+.|+++ ++.. ..+.| .++.+.+.... ..........++..++ ++||.+.++..|+
T Consensus 338 -~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G-~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~~- 413 (443)
T PRK06058 338 -DDLVARARQIEALMTDRLRALAAEDDRIGDVRGRG-AMIAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTYG- 413 (443)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccc-eEEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCCC-
Confidence 123334444455555555543 3211 23444 55556653211 1111112233444444 6799999875543
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 400 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 400 ~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+++|+..+. ++++++++++++|++++++
T Consensus 414 ---~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 414 ---NVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred ---CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 589998765 5999999999999999865
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=145.15 Aligned_cols=167 Identities=20% Similarity=0.246 Sum_probs=128.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH-HHHhhhCCCEEEEeecc
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD-RDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~-~~~~~~~g~~~~~v~~~ 166 (469)
+.++++.++++++ .+.+++++++|+++|+..++.++..++++|+++.|.|.++. ..+... |++++.++.+
T Consensus 2 ~~~~~~~l~~~~~--------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-g~~~~~v~~~ 72 (170)
T cd01494 2 LEELEEKLARLLQ--------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELA-GAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhc-CCEEEEeccC
Confidence 3688899999884 35788999999999999999999888999999999999888 666666 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 167 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
..+....+.+.+++.. .+.+++++++++|+||+|...+. ++|.++|+++|+++|+|++|..+......
T Consensus 73 ~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~---- 140 (170)
T cd01494 73 DAGYGGLDVAILEELK-----AKPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG---- 140 (170)
T ss_pred CCCccchhhhhhhhcc-----ccCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc----
Confidence 5443333333443322 13488999999999999999986 55888889999999999999865433211
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEe
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS 286 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~ 286 (469)
... . ..+.++++.|++|.+|. .++|++++
T Consensus 141 ~~~-~--------~~~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 141 VLI-P--------EGGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred ccc-c--------cccCCEEEEEcccccCC--CceEEEEe
Confidence 011 0 22466888899999974 78999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-15 Score=153.38 Aligned_cols=330 Identities=14% Similarity=0.126 Sum_probs=192.7
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+ .+.+. .|.+.+++.+... ... +.....+.++...+|+++.+.. ..+
T Consensus 35 G~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~-------------~~~-~~~~~~~~~~~~~la~~l~~~~------~~~ 94 (395)
T PRK03715 35 GKRYLDFIQGWAVNCLGHCNPGMVEALAAQAE-------------KLI-NPSPAFYNEPMAKLAGLLTQHS------CFD 94 (395)
T ss_pred CCEEEECCcChhhccCCCCCHHHHHHHHHHHH-------------hcc-cccccccCHHHHHHHHHHhhcc------CCC
Confidence 4568998754 33333 3556666655311 111 1111223577788899887431 246
Q ss_pred cEEEeCChHHHHHHHHHHhc------CCC-CEEEEccCCCcChHHHHhhhCCCEEEE---eeccCCCCcc----cCHHHH
Q 043923 113 KIVLTAGATSANETLMFCLA------EPG-EAFLLPTPYYPGFDRDLKWRTGVEIVP---IQCTSLNGFQ----ITETAI 178 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~------~~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~---v~~~~~~~~~----~d~~~l 178 (469)
.+++++++++|+..++..+. ++| ..|+..+..|++.........|..... .|.. .++. .|++.+
T Consensus 95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~d~~~l 172 (395)
T PRK03715 95 KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQV--PGFPKAELNDIASV 172 (395)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCC--CCceeeCCchHHHH
Confidence 89999999999999998874 123 568888888777543332222432111 1111 1111 367888
Q ss_pred HHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccccc
Q 043923 179 EEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 257 (469)
Q Consensus 179 ~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~ 257 (469)
++.+.+ ++.+|++...++..|... +.+.+++|.++|++||+++|+||++.++.-.+..+ ..+...
T Consensus 173 ~~~l~~------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~--a~~~~g------ 238 (395)
T PRK03715 173 EKLITD------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLF--AYELSG------ 238 (395)
T ss_pred HHHcCC------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchh--hHhhcC------
Confidence 877753 667666664455667654 68899999999999999999999999731122211 111111
Q ss_pred CCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 043923 258 TQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 258 ~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 335 (469)
..+. +.+++|.+| .|+.+|.+++.++. ....... .++ ..++++..++.+.|+...- +...+.+++
T Consensus 239 --v~PD---i~t~gK~lg-~G~p~~av~~~~~i-~~~~~~~~~~T~-~g~pl~~aaala~L~~l~~-----~~l~~~~~~ 305 (395)
T PRK03715 239 --IEPD---IMTLGKGIG-GGVPLAALLAKAEV-AVFEAGDQGGTY-NGNPLMTAVGVAVISQLLA-----PGFLEGVRA 305 (395)
T ss_pred --CCCc---eeeehhhhh-CCcceEEEEEcccc-ccccCCCcCCCC-CCCHHHHHHHHHHHHHHHh-----ccHHHHHHH
Confidence 1122 247899998 78999999985543 2211111 122 2455555555555432210 123344444
Q ss_pred HHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhC---CeEEeCCCCCCCCCCCeEEEE
Q 043923 336 RHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV---KLNISPGSSCHCTEPGWFRVC 408 (469)
Q Consensus 336 ~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~---GI~v~pg~~f~~~~~~~iRi~ 408 (469)
.-++|.+.|+++ ++...... |.++.+.+.... . ..+...+.+. ||.+.+.. +..+|++
T Consensus 306 ~g~~l~~~L~~l~~~~~i~~vrG~-Glm~~i~l~~~~-------~-~~~~~~~~~~~~~Gi~~~~~~------~~~lR~~ 370 (395)
T PRK03715 306 RGEYLKEKLLELSEERGLEGERGE-GLLRALLLGKDI-------G-PQIVEKARDMQPDGLLLNAPR------PNLLRFM 370 (395)
T ss_pred HHHHHHHHHHHHhhcCCcCeEEcc-eeEEEEEecCch-------H-HHHHHHHHhccCCCEEEeecC------CCEEEEe
Confidence 445555555543 44323333 577777775310 0 1122223344 99987432 3579999
Q ss_pred eec-CCHHHHHHHHHHHHHHHHh
Q 043923 409 FAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 409 ~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+.. ++++++++++++|++++++
T Consensus 371 p~l~~t~~ei~~~~~~l~~~l~~ 393 (395)
T PRK03715 371 PALNVTTEEIDQMIAMLRSVLDK 393 (395)
T ss_pred CCcccCHHHHHHHHHHHHHHHHh
Confidence 987 5999999999999999875
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-15 Score=154.39 Aligned_cols=171 Identities=20% Similarity=0.300 Sum_probs=129.0
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh---------cCCCCEEEEccCCCcChHHHHhhhCCC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL---------AEPGEAFLLPTPYYPGFDRDLKWRTGV 158 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l---------~~~gd~Vl~~~P~y~~~~~~~~~~~g~ 158 (469)
..+|++++|++++ .+++++++|+++++..++.++ +++||.|+++.|+|..+...+... |+
T Consensus 65 ~~~fe~~lA~~~g----------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~-G~ 133 (438)
T PRK15407 65 NDAFEKKLAEFLG----------VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQN-GL 133 (438)
T ss_pred HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHc-CC
Confidence 4889999999985 346899999999999988876 478999999999999998888877 99
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV- 237 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~- 237 (469)
+++.++++. ..|.+|++.+++++++ ++++|+++++ +|... ++++|.++|++||++||+|++++...
T Consensus 134 ~pv~vdvd~-~~~~id~~~le~~i~~------~tkaVi~~~~---~G~p~---dl~~I~~la~~~gi~vIeDaa~a~G~~ 200 (438)
T PRK15407 134 VPVFVDVEL-PTYNIDASLLEAAVSP------KTKAIMIAHT---LGNPF---DLAAVKAFCDKHNLWLIEDNCDALGST 200 (438)
T ss_pred EEEEEecCC-CcCCcCHHHHHHHcCc------CCeEEEEeCC---CCChh---hHHHHHHHHHHCCCEEEEECccchhhh
Confidence 999999874 4678999999998865 8899888864 45443 46778999999999999999997321
Q ss_pred cCCCCccchhhhhhccccccCCcCCeEEEEccC--ccccCCCcceEEEEEecCHHHHHHHHHhcc
Q 043923 238 FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL--SKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300 (469)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~GlRiG~li~~~~~~~~~~~~~~~ 300 (469)
+.+.. .. ..+ .+.+.|| +|.+. .|- -|+++.+++.+.+.+..++.
T Consensus 201 ~~g~~---~G------------~~g-d~~~fSf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~~~ 247 (438)
T PRK15407 201 YDGRM---TG------------TFG-DIATLSFYPAHHIT-MGE-GGAVFTNDPLLKKIIESFRD 247 (438)
T ss_pred cCCee---ee------------ccC-ceEEEeCCCCCCcc-ccC-ceEEEECCHHHHHHHHHHHH
Confidence 22211 11 112 2334555 57775 443 49999988888766554433
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=137.58 Aligned_cols=304 Identities=16% Similarity=0.199 Sum_probs=208.5
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
.+.++.+.+|+|++ -|.+-+|+|+.++-+++|.+++++||.|++...+|....-++... |.++..||-.
T Consensus 62 pI~~F~~dlaeFlg----------~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEra-gl~v~eVp~t 130 (382)
T COG1103 62 PIKDFLEDLAEFLG----------MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERA-GLNVAEVPNT 130 (382)
T ss_pred cHHHHHHHHHHHhC----------CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhc-CCeEEecCCC
Confidence 35788888999986 677899999999999999999999999999998866555667777 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhcC-CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 167 SLNGFQITETAIEEAYQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 167 ~~~~~~~d~~~l~~~i~~~~~~~-~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
....|.++++.....|++...++ ..+.+.++++|....|...+ -++++++|+++|+.++...+|.- +. -..+
T Consensus 131 g~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~---Gr-mpvs 203 (382)
T COG1103 131 GYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV---GR-MPVS 203 (382)
T ss_pred CCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee---cc-cccc
Confidence 77789999999999999877665 45778899988766777654 67799999999999999999973 22 1234
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-c--------ccccCcHHHHHHHHHHh
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-S--------SFGLVSSQTQYLLSALL 316 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~--------~~~~~s~~~q~~~~~~l 316 (469)
..+. +..++++|-+|+++ +.-.+|.+.....+-...++.. . .++ .++... -+..++
T Consensus 204 ~ke~------------g~DFiVgSGHKsmA-As~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellG-CT~rGa-pivTlm 268 (382)
T COG1103 204 GKEI------------GADFIVGSGHKSMA-ASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLG-CTVRGA-PIVTLM 268 (382)
T ss_pred cccc------------CCCEEEecCccchh-ccCCeeEEeehhHHHHHHHhhcccccccceeeeec-ccccCc-hHHHHH
Confidence 3333 56688899999997 6669999988555443333322 1 122 111111 123344
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-Cceec--CCceEEEEEecccccc--cCChhHHHHHHHHHHHhCCe-E
Q 043923 317 SDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLK--SNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYDVKL-N 390 (469)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~--~~~g~~~~v~~~~~~~--~~~~~~~~~l~~~ll~~~GI-~ 390 (469)
++-.++.+.+++.-+.++ ..+++.+.|+++| +.-.+ |...-.+.+..|.... .+... ..-+...-|++.|| -
T Consensus 269 ASfP~V~eRVkrWdeEv~-kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r-~gyFlY~ELK~RgI~G 346 (382)
T COG1103 269 ASFPHVVERVKRWDEEVE-KARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKR-KGYFLYEELKKRGIHG 346 (382)
T ss_pred hcCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcC-CceeeHHHHHhcCccc
Confidence 443443444443333343 4467888888874 54332 3322345555553210 00000 00122333566677 4
Q ss_pred EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 391 ISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.||. ..++.+|+-.++.|+++..+++++++++++
T Consensus 347 I~~G~------Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 347 IQPGQ------TKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred cccCc------eeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 45553 568999997789999999999999999875
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-15 Score=150.16 Aligned_cols=293 Identities=11% Similarity=0.076 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcE--EEeCChHHHHHHHHHHh--cCCCCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKI--VLTAGATSANETLMFCL--AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i--~~t~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
.++.+.+.+++.+.++ .+++++ ++|+|+||++..++... ..+++.|+++.-.|.+....+... |++...++
T Consensus 64 ~~~e~~~~~~~a~l~g----~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~l-g~~~~~V~ 138 (380)
T PRK02769 64 FDFERDVMNFFAELFK----IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLL-RIKSRVIT 138 (380)
T ss_pred HHHHHHHHHHHHHHhC----CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHc-CCCCceec
Confidence 5566666666665554 444444 88999999987666543 246789999999999999888877 99888888
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC---eEEEEeccccccccCCC
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN---IHLISDEIYSGTVFSSP 241 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~---~~iI~Deay~~~~~~~~ 241 (469)
.++ ++.+|+++|++++++. +.++.+|+++.++|+||.+-|.++ |.++|+++| +++++|.+++.+...-.
T Consensus 139 ~~~--~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~---I~~i~~~~g~~~~~lHVDaA~gg~~~p~~ 210 (380)
T PRK02769 139 SLP--NGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKE---IQEILKKIGIDDYYIHADAALSGMILPFV 210 (380)
T ss_pred cCC--CCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHH---HHHHHHHhCCCceEEEEEecccceeeccc
Confidence 864 4579999999999762 335889999999999999999655 788888998 79999999986432211
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----cc---cccCc---HHHHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----SS---FGLVS---SQTQY 310 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-----~~---~~~~s---~~~q~ 310 (469)
......+. ..+...+..|.+|.++ ....+|.++..++.+....... .. .++-+ .+..+
T Consensus 211 ~~~~~~d~----------~~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw 279 (380)
T PRK02769 211 NNPPPFSF----------ADGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLW 279 (380)
T ss_pred CccccCCc----------cCCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHH
Confidence 00011111 1134556679999886 5567999998765443221100 00 11122 23333
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeE
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~ 390 (469)
++...+.. .-.++..+...+..+++.+.|++.|+++...+..+.+.++.+. + + +. .|..
T Consensus 280 ~aL~~lg~-----~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~--------~--~----~~--~~w~ 338 (380)
T PRK02769 280 AAIRSLGS-----KGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS--------E--R----IW--KKWH 338 (380)
T ss_pred HHHHHHCH-----HHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC--------H--H----HH--hCee
Confidence 33333332 2346667777778889999999889887665555667666552 0 1 12 2555
Q ss_pred EeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 391 ISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+.+- .+++|+++.. ++++.++++++.|.+.+....+
T Consensus 339 l~~~-------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~~~~ 375 (380)
T PRK02769 339 LATS-------GNQAHIITMPHHNKQQIDSLIDELIFDLKNPNK 375 (380)
T ss_pred Eccc-------CCEEEEEECCCCCHHHHHHHHHHHHHHHhcccc
Confidence 5432 2479999866 4888999999999988875544
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-15 Score=149.32 Aligned_cols=209 Identities=14% Similarity=0.150 Sum_probs=151.6
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
....|.+.+|++-+ .+..+++++++.|+..++.+++++||.|++....|.+....+ +.. |+++..
T Consensus 63 t~~~le~~la~LEg----------~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~-Gi~v~~ 131 (395)
T PRK08114 63 THFSLQEAMCELEG----------GAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKL-GVTTTW 131 (395)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhc-CcEEEE
Confidence 35778888887653 567788888999999999999999999999998997766554 445 999988
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccccccccCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK--NIHLISDEIYSGTVFSS 240 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Deay~~~~~~~ 240 (469)
++. .|.+.+++++++ ++++|++.+|+||+|.+.+ +++|+++|+++ |+++++|.+++..++
T Consensus 132 vd~-------~d~~~l~~~l~~------~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~-- 193 (395)
T PRK08114 132 FDP-------LIGADIAKLIQP------NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL-- 193 (395)
T ss_pred ECC-------CCHHHHHHhcCC------CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc--
Confidence 763 266888888865 7899999999999999998 55588888898 499999999973211
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH-hcccc-cCcHHHHHHHHHHhc
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-MSSFG-LVSSQTQYLLSALLS 317 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~-~~~~~-~~s~~~q~~~~~~l~ 317 (469)
..+. ..+..+++.|.+|.++-+| +-.|.++.++. ..+.+.. ....+ ..++...+.+.+-|+
T Consensus 194 ---~~pl------------~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~-~~~~l~~~~~~~G~~~~p~~a~l~~rgl~ 257 (395)
T PRK08114 194 ---FKAL------------DFGIDISIQAGTKYLVGHSDAMIGTAVANAR-CWEQLRENSYLMGQMVDADTAYMTSRGLR 257 (395)
T ss_pred ---cCHH------------HcCCcEEEEcCcccccCCCcceeEEEEcCHH-HHHHHHHHHHhccCCCCHHHHHHHHcCCC
Confidence 2222 2366789999999875454 77786666433 3232322 22222 356666665555555
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
. +.-+.++..++...+.+.|+++
T Consensus 258 T-------L~lR~~~~~~na~~va~~L~~h 280 (395)
T PRK08114 258 T-------LGVRLRQHEESSLKVAEWLAEH 280 (395)
T ss_pred c-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 4 3455666777888899999877
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-15 Score=151.40 Aligned_cols=346 Identities=15% Similarity=0.092 Sum_probs=193.5
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ .+.+. .|.+.+++++..+. .... .+... ..+.+..+|+.+.+... -.
T Consensus 39 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~----------~~~~-~~~~~--~~~~~~~la~~l~~~~p----~~ 101 (423)
T PRK05964 39 ADGRELIDAISSWWVATHGHNHPYIDQAIREQLDR----------LDHV-IFAGF--THEPAERLAQRLVALTP----GG 101 (423)
T ss_pred CCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhh----------CCCc-ccccc--CCHHHHHHHHHHHHhCC----CC
Confidence 344568998766 44443 46666666653111 0001 11001 12445566666654421 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------C-CCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLAE-------P-GEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNG 170 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~-------~-gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~ 170 (469)
.+.+++++++++|+..+++.... + ..+|+...-.|++....+....+- .+..++....+.
T Consensus 102 ~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 181 (423)
T PRK05964 102 LDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGY 181 (423)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchh
Confidence 46899999999999999887521 2 357888888887754332211111 112222221110
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEec-CCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 171 FQITETAIEEAYQLAQKRHLKVKGVLVTN-PSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 171 ~~~d~~~l~~~i~~~~~~~~~~~~vvl~~-P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
...+++.+++.+.+ .+.++.+|++.. .+..+|... +.+.+++|.++|++||+++|+||++.++...+..+ ..+
T Consensus 182 ~~~~~~~l~~~l~~---~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~--a~~ 256 (423)
T PRK05964 182 EQATLDALEALLEK---HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF--ACE 256 (423)
T ss_pred HHHHHHHHHHHHHh---CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh--HHH
Confidence 01125667766653 123666666643 266678655 89999999999999999999999998743323211 111
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh--------cccccCcHHHHHHHHHHhcCc
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM--------SSFGLVSSQTQYLLSALLSDK 319 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~--------~~~~~~s~~~q~~~~~~l~~~ 319 (469)
... ....+ .+++|+++ .| +++|++++ ++.+.+.+... ...+..++++..++.+.++..
T Consensus 257 ~~~--------v~pDi---~~~~K~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l 323 (423)
T PRK05964 257 QAG--------VSPDI---MCLSKGLT-GGYLPLAATLC-TAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLF 323 (423)
T ss_pred hcC--------CCCCe---eeeehhhh-cCcccceEEEE-cHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHH
Confidence 111 11222 37899997 55 89999888 45555544321 111124666666666665421
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec--CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCC
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK--SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSS 396 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~--~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~ 396 (469)
.- . ...++..+.-+++.+.|+++ ..+... ..-|.++.+.+...... .....+...++ ++||.+.+..
T Consensus 324 ~~-~----~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~---~~~~~l~~~l~-~~Gv~v~~~~- 393 (423)
T PRK05964 324 ED-E----PVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLE---RDGPALRAFAL-ERGVLLRPLG- 393 (423)
T ss_pred Hh-c----CHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcch---hHHHHHHHHHH-HCCeEEEecC-
Confidence 10 1 12233333344455555443 222211 12356666777532100 11234555554 6799998631
Q ss_pred CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 397 CHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 397 f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.+|++... ++++++++++++|+++++++
T Consensus 394 ------~~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 394 ------NTIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred ------CEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 369999875 49999999999999999763
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-15 Score=151.36 Aligned_cols=348 Identities=14% Similarity=0.059 Sum_probs=197.6
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE--
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL-- 116 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~-- 116 (469)
..|+|-..||..++................ | ....+-|+...-++++.+...+...+.++ ...+.+++
T Consensus 35 ~~l~liasen~~s~~v~~a~~s~~~~ky~~---G---~~g~r~~~G~~~~d~lE~~~~~~~~~~f~----~~~~~~~~nv 104 (475)
T PLN03226 35 KGLELIASENFTSRAVMEALGSCLTNKYSE---G---LPGARYYGGNEYIDQIETLCQKRALEAFR----LDPEKWGVNV 104 (475)
T ss_pred cCeeEecCCccCCHHHHHHHhhHHhccccC---C---CCCCcCcCCChhHHHHHHHHHHHHHHHhC----CCcceeEEec
Confidence 568999999988765444333222111110 0 11223344444455665533333333333 34444443
Q ss_pred -eCChHHHHHHHHHHhcCCCCEEEEccC---CCcChHHH---Hhhh-CCCE--EEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 117 -TAGATSANETLMFCLAEPGEAFLLPTP---YYPGFDRD---LKWR-TGVE--IVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 117 -t~G~~~al~~~~~~l~~~gd~Vl~~~P---~y~~~~~~---~~~~-~g~~--~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
.++++.|+..++.+|++|||+|+..+. .|..+... .+.. .+.. ++++.++. .+..+|++++++.+.+.
T Consensus 105 ~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~- 182 (475)
T PLN03226 105 QPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLF- 182 (475)
T ss_pred CcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhc-
Confidence 366788889899999999999998553 22221111 1111 0111 22344443 34568999999988643
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++++|++. .++ +|...+.+ +|.++|+++|+++++|+++.-.........+. .....++
T Consensus 183 ----~pklIv~~-~S~-~s~~~D~a---~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p-------------~~~~Div 240 (475)
T PLN03226 183 ----RPKLIIAG-ASA-YPRDWDYA---RMRKIADKVGALLMCDMAHISGLVAAQEAASP-------------FEYCDVV 240 (475)
T ss_pred ----CCeEEEEe-cCc-CCCccCHH---HHHHHHHHcCCEEEEEchhhhCcccCCCCCCC-------------CCCCeEE
Confidence 66765543 343 67777755 57888999999999999997443332221111 1134578
Q ss_pred EccCccccCCCcceEEEEEecCHHH-------------HHHHHHhcc--cc-cCcHHHHHHHHHHhcCchhhHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMV-------------VAAATKMSS--FG-LVSSQTQYLLSALLSDKKFTQNYISENK 330 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~-------------~~~~~~~~~--~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 330 (469)
++|++|++ .|.+-|++++++... ...++.... +. .++.....++.+++.... ....+..+
T Consensus 241 ~~t~hK~L--~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~--~~~~~~~~ 316 (475)
T PLN03226 241 TTTTHKSL--RGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TPEFKAYQ 316 (475)
T ss_pred EecCcccc--cCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh--CcCHHHHH
Confidence 89999998 223338888854321 111221111 11 122222222333332211 11134557
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEeccc-ccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC---CCCCeE
Q 043923 331 KRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRH-LLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC---TEPGWF 405 (469)
Q Consensus 331 ~~l~~~~~~l~~~L~~~g~~v~~~~-~g~~~~v~~~~-~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~---~~~~~i 405 (469)
+++.++.++|.+.|.+.|+++..+. ....+++++.. .... ..+...|++.||.+..+..++. -.++.+
T Consensus 317 ~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~-------~~~~~~L~~~~I~~nk~~~p~~~~~~~~~gi 389 (475)
T PLN03226 317 KQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTG-------SRVEKVLDLAHITLNKNAVPGDSSALVPGGV 389 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCH-------HHHHHHHHHCCCEECCCCCCCCcccCCCCCc
Confidence 7788888999999999999887532 24567777742 2221 2345667788999986642221 124558
Q ss_pred EEEee-----cCCHHHHHHHHHHHHHHHHhh
Q 043923 406 RVCFA-----NMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 406 Ri~~~-----~~~~e~i~~~l~~L~~~l~~~ 431 (469)
|++.. .+++++++++.+.|.++++..
T Consensus 390 RiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 390 RIGTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred ccCcHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 98442 257899999999999999854
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-15 Score=164.13 Aligned_cols=313 Identities=12% Similarity=0.084 Sum_probs=195.3
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCC--cEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHH---HhhhCCCEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTS--KIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRD---LKWRTGVEIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~---~~~~~g~~~~ 161 (469)
+.+.|+.+|++++ .+++ .|++|+|+|+++.+++..+ .++||.|++..-.|...... ++.. |+++.
T Consensus 80 ~e~aR~~ia~~lg--------a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~-G~~v~ 150 (805)
T PLN02724 80 IESARQQVLEYFN--------APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEK-GAAAI 150 (805)
T ss_pred HHHHHHHHHHHhC--------CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHc-CCeEE
Confidence 6788899999886 4454 5899999999999999887 67899999987777665533 2334 89998
Q ss_pred EeeccCCC------CcccC--HHHHHHHHHH-H---HhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc-----C
Q 043923 162 PIQCTSLN------GFQIT--ETAIEEAYQL-A---QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK-----N 224 (469)
Q Consensus 162 ~v~~~~~~------~~~~d--~~~l~~~i~~-~---~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~-----~ 224 (469)
.++++... ...++ .+++++.++. . ...++++++|.++.-+|-||..+|.+.++.+.+.++.+ +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 88876211 11222 2455554321 0 01123668999999999999999988655444433332 3
Q ss_pred eEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-c----
Q 043923 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-S---- 299 (469)
Q Consensus 225 ~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~---- 299 (469)
+++++|.+++ .+-. ...+..+ +..+++.|+.|.+|.| ..+|++++.++.+.. +... .
T Consensus 231 ~~v~vDaaQ~---~g~~-piDv~~~------------~~Dfl~~S~HK~~GgP-~G~G~L~vr~~~~~~-l~p~~~GGg~ 292 (805)
T PLN02724 231 WMVLLDAAKG---CGTS-PPDLSRY------------PADFVVVSFYKIFGYP-TGLGALLVRRDAAKL-LKKKYFGGGT 292 (805)
T ss_pred eEEEeehhhh---cCCC-CCChhhc------------CCCEEEEecceeccCC-CCceEEEEehhhhhh-hcCCccCCCc
Confidence 6899999986 2222 2333322 4567888999999723 358999886543322 1110 0
Q ss_pred ---------------------ccccCcHHHHHHHHHHhcCchhhHH-HHHHHHHHHHHHHHHHHHHHHhc-------CCc
Q 043923 300 ---------------------SFGLVSSQTQYLLSALLSDKKFTQN-YISENKKRLKQRHRKLVSGLEKA-------GIS 350 (469)
Q Consensus 300 ---------------------~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~-------g~~ 350 (469)
-.++.+.+...++.++++ ++.+ .++...++..+..+++.+.|.++ ++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~---~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~ 369 (805)
T PLN02724 293 VAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK---LLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCV 369 (805)
T ss_pred eEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHH---HHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEE
Confidence 012233333333333332 1111 13555666777778888888876 255
Q ss_pred eecCC--------ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC----------------------
Q 043923 351 CLKSN--------AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT---------------------- 400 (469)
Q Consensus 351 v~~~~--------~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~---------------------- 400 (469)
++.+. .+..+.+.+.+.. ...+. . ..+..++.++||.++.|.+|.+.
T Consensus 370 iyg~~~~~~~~~~r~~ivsFnv~~~~-~~~v~-~-~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~ 446 (805)
T PLN02724 370 LYGNHTFKLEFHIQGPIVTFNLKRAD-GSWVG-H-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHV 446 (805)
T ss_pred EcCCCCCCCCcccccCEEEEEEEcCC-CCEeC-H-HHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCc
Confidence 66432 2345555554321 11110 1 22556677889999999877631
Q ss_pred -----------CCCeEEEEeecC-CHHHHHHHHHHHHHHHHhhcc
Q 043923 401 -----------EPGWFRVCFANM-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 401 -----------~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..+.+|+|++.. +.+|++++++.|++......+
T Consensus 447 c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~~~~ 491 (805)
T PLN02724 447 CWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVSTPK 491 (805)
T ss_pred cCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhcCCC
Confidence 137899999875 999999999999996644433
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=147.55 Aligned_cols=287 Identities=16% Similarity=0.116 Sum_probs=165.3
Q ss_pred cEEE-eCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCC------------CEEEEeeccCCCCcc-cCHH
Q 043923 113 KIVL-TAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTG------------VEIVPIQCTSLNGFQ-ITET 176 (469)
Q Consensus 113 ~i~~-t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~-~d~~ 176 (469)
.+++ ++++++|+..+++... ....+|+....+|++....+....| ..+..+|.+...... -|++
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 183 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLA 183 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHH
Confidence 5656 5899999999988753 2335788888888776433221101 023334432100000 2567
Q ss_pred HHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccc
Q 043923 177 AIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 255 (469)
Q Consensus 177 ~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~ 255 (469)
.+++.+++......++.+|++..-....|. +.+.+.+++|.++|++||+++|+||++.++...+..+ .. +...
T Consensus 184 ~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~-~~~~---- 257 (425)
T PRK09264 184 YLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SF-ERAG---- 257 (425)
T ss_pred HHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HH-hhcC----
Confidence 777777542111124566555533555675 5789999999999999999999999998742222211 11 1110
Q ss_pred ccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-h-cccccCcHHHHHHHHHHh----cCchhhHHHHHHH
Q 043923 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-M-SSFGLVSSQTQYLLSALL----SDKKFTQNYISEN 329 (469)
Q Consensus 256 ~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-~-~~~~~~s~~~q~~~~~~l----~~~~~~~~~~~~~ 329 (469)
..+.+ .++||.+|..|+++|++++++. +. .+.. . ...+..++++..++.+.+ .+.++ .+++
T Consensus 258 ----v~PDi---~t~~K~l~~~G~pigav~~~~~-i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l-~~~~--- 324 (425)
T PRK09264 258 ----ITPDI---VTLSKSISGYGLPMALVLIKPE-LD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAF-EKEV--- 324 (425)
T ss_pred ----CCCCE---EEeccccCCCccceEEEEEchh-hh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHH-HHHH---
Confidence 11232 3779999944999999999654 33 2221 1 111224455555444444 22222 2333
Q ss_pred HHHHHHHHHHHHHHHHh----cC-CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCe
Q 043923 330 KKRLKQRHRKLVSGLEK----AG-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~----~g-~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~ 404 (469)
++..+++.+.|++ ++ +.......|+++++.++.. .....++..++ ++||.+.++..+ ...
T Consensus 325 ----~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~------~~~~~l~~~~~-~~Gv~~~~~~~~----~~~ 389 (425)
T PRK09264 325 ----KAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDG------ELAGKIAAEAF-ENGLIIETSGPE----DEV 389 (425)
T ss_pred ----HHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecCh------HHHHHHHHHHH-HCCCEEeccCCC----CCE
Confidence 3333334443332 32 2112233568889988642 12234555554 669999875432 357
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 405 FRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 405 iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+|++... ++++++++++++|.+++++..+
T Consensus 390 lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 390 VKLLPPLTIDEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8888765 4899999999999999876533
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=149.84 Aligned_cols=329 Identities=9% Similarity=0.065 Sum_probs=207.1
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCC---CCcEEEeCChHHHHHHHHHHhcC-----------CCCEEEEccCCCcC
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFD---TSKIVLTAGATSANETLMFCLAE-----------PGEAFLLPTPYYPG 147 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~---~~~i~~t~G~~~al~~~~~~l~~-----------~gd~Vl~~~P~y~~ 147 (469)
|...+...++++.+.+|+.+.++..-... ...-++|+|+|+++..++.+..+ +.-.|++.+-+|..
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S 193 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA 193 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence 33334568999999999998877320000 02467899999998777655421 11245567778888
Q ss_pred hHHHHhhhCCCE---EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC
Q 043923 148 FDRDLKWRTGVE---IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN 224 (469)
Q Consensus 148 ~~~~~~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~ 224 (469)
...++... |+. ++.||.+..+++.+|++.|+++|++....+..+-+|+.+-..-+||.+.|.+ +|+++|++||
T Consensus 194 v~Kaa~~l-Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~---eI~~i~~~~~ 269 (490)
T PLN02880 194 LQKACQIA-GIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLL---ELGKIAKSNG 269 (490)
T ss_pred HHHHHHHc-CCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHH---HHHHHHHHcC
Confidence 88888887 884 7888987656789999999999987655555666677777788999998855 4888999999
Q ss_pred eEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH-HHHHHHhcccc-
Q 043923 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV-VAAATKMSSFG- 302 (469)
Q Consensus 225 ~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~-~~~~~~~~~~~- 302 (469)
+++++|.||++.....+. ....++. ...-.-+..+++|.++ ....+|.++..+... ...+.....+.
T Consensus 270 iwlHVDaA~gg~~~~~~~---~~~~l~g-------ie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~ 338 (490)
T PLN02880 270 MWFHVDAAYAGSACICPE---YRHYIDG-------VEEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLK 338 (490)
T ss_pred CEEEEehhhHHHHHhCHH---HHHHhcC-------chhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhc
Confidence 999999999875432221 1112221 1233456679999985 778999999865332 12111100000
Q ss_pred ---------------cC-c-----HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEE
Q 043923 303 ---------------LV-S-----SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFC 360 (469)
Q Consensus 303 ---------------~~-s-----~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~ 360 (469)
++ . .+..++. |+... .+.+.+..+...+..+++.+.+++. ++++..+.....+
T Consensus 339 ~~~~~~~~~~~~~~~~i~~~rr~~alklw~~---l~~~G--~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv 413 (490)
T PLN02880 339 NKASQANSVVDYKDWQIPLGRRFRSLKLWMV---LRLYG--VENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLV 413 (490)
T ss_pred CccccccCCCChhccCcCCCCcccHHHHHHH---HHHhC--HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEE
Confidence 00 0 1111111 22212 2234444454446777888888776 7887665444566
Q ss_pred EEeccccccc-CCh-hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC--CHHHHHHHHHHHHHHHHhhcc
Q 043923 361 WVDMRHLLRS-NTF-EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM--SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 361 ~v~~~~~~~~-~~~-~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~--~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++++..... ... .-...+.+++.++..+.+.+... .+..++|+++... ++++++.+++.|.++.++...
T Consensus 414 ~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~---~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~ 487 (490)
T PLN02880 414 CFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVL---SGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG 487 (490)
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEE---CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7776532110 000 11134556666555666654332 2356899999763 679999999999998776643
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-14 Score=142.09 Aligned_cols=211 Identities=20% Similarity=0.255 Sum_probs=155.5
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
....|.+++|.+-+ .+..+.++++..||..++.+|+++||.|+++...|.+....+ +.. |+++..
T Consensus 64 T~~~lE~~~a~LEg----------~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~-gi~~~~ 132 (396)
T COG0626 64 TRDALEEALAELEG----------GEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKF-GVEVTF 132 (396)
T ss_pred cHHHHHHHHHHhhC----------CCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhc-CeEEEE
Confidence 45788888888763 677899999999999999999999999999999998876554 334 888887
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.. +.+.+++++.+ +++++|++..|.||+-.+.+ +.+|+++|+++|+++|+|..|+..++-.
T Consensus 133 ~d~~-------~~~~~~~~~~~-----~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~-- 195 (396)
T COG0626 133 VDPG-------DDEALEAAIKE-----PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR-- 195 (396)
T ss_pred ECCC-------ChHHHHHHhcc-----cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC--
Confidence 7632 34556666542 28999999999999988877 6668888889999999999998644322
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCC-CcceEEEEEecCHHHHHHH--HHhcccc-cCcHHHHHHHHHHhcC
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL-PGFRVGAIYSNDDMVVAAA--TKMSSFG-LVSSQTQYLLSALLSD 318 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~-~GlRiG~li~~~~~~~~~~--~~~~~~~-~~s~~~q~~~~~~l~~ 318 (469)
.. ..+..|++.|.+|.+|- ..+=.|.++++++.+.+.+ ......+ .+++...+.+.+-++.
T Consensus 196 ---PL------------~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT 260 (396)
T COG0626 196 ---PL------------ELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRT 260 (396)
T ss_pred ---hh------------hcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch
Confidence 12 22567999999999953 3355576776777776654 2222233 3567776766666655
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.-+.++..++...+.+.|+++
T Consensus 261 -------L~~Rm~~~~~nA~~IA~~L~~~ 282 (396)
T COG0626 261 -------LALRMERHNENALKIAEFLADH 282 (396)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcC
Confidence 3445666677788888999886
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-14 Score=146.61 Aligned_cols=358 Identities=13% Similarity=0.064 Sum_probs=196.0
Q ss_pred CCCCCeeeeecc--cccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ ...+ ..+.+.+++++... .........-..+.+.++|+.+.+..... ..
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~-------------~~~~~~~~~~~~~~~~~lae~L~~~~p~~--~~ 100 (442)
T TIGR00709 36 VEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQ-------------SGLPLHTLDLTTPLKDAFIEALLNIIPKR--KM 100 (442)
T ss_pred CCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHH-------------hccCccccccCcHHHHHHHHHHHHhCCCc--CC
Confidence 344568998766 3333 34666666665311 10100000011355556666665442200 01
Q ss_pred CCc-EEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCCccc--
Q 043923 111 TSK-IVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNGFQI-- 173 (469)
Q Consensus 111 ~~~-i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~-- 173 (469)
... ++++++++||++.+++... .....|+...-+|++....+....|. .+..+|.. +.+..
T Consensus 101 ~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 178 (442)
T TIGR00709 101 DYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYP--HEYRCPF 178 (442)
T ss_pred CccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCC--ccccccc
Confidence 124 4556999999999988753 23457888888888875443322121 12223322 11111
Q ss_pred ------CHHH----HHHHHHHHHhcCCceeEEEEecCC-CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 174 ------TETA----IEEAYQLAQKRHLKVKGVLVTNPS-NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 174 ------d~~~----l~~~i~~~~~~~~~~~~vvl~~P~-NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
+.+. +++.++.......++.++++.... |+....+|.+.++++.++|++||+++|.||++.++...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~- 257 (442)
T TIGR00709 179 GIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT- 257 (442)
T ss_pred cCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-
Confidence 1122 233332211112356666666544 4444568999999999999999999999999998544332
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-cccccCcHHHHHHHHHHhcCchh
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSFGLVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~ 321 (469)
+.....+ . ..+.++ ++||.+| .|+++|+++++++ +....... ...+..+++++.++.+.|+..+
T Consensus 258 ~~a~~~~-g--------v~PDiv---~~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~- 322 (442)
T TIGR00709 258 MFAFEHA-G--------IEPDFV---VMSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWK- 322 (442)
T ss_pred hhHHHHc-C--------CCCcEE---EEccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHH-
Confidence 2222111 1 223333 3899999 5999999999655 42221111 1122367788888777775321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEeccccccc------C--ChhHHHHHHHHHHHhCCe
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLRS------N--TFEAEMELWKKIVYDVKL 389 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~~------~--~~~~~~~l~~~ll~~~GI 389 (469)
+ +...+..+++.++|.+.|++ +++......-|.++.+.+...... . .......+...+ .++||
T Consensus 323 -~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gv 397 (442)
T TIGR00709 323 -D---DNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGAC-FENGL 397 (442)
T ss_pred -h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHH-HHCCe
Confidence 1 12233444444555555543 332222223457777877432100 0 001122334444 46799
Q ss_pred EEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 390 NISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 390 ~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
.+.+... ..+.+|+..+. +++++++++++++.+++++..++
T Consensus 398 l~~~~~~----~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~~ 439 (442)
T TIGR00709 398 LLETGGR----EGEVFRLLCPITIDQEECEEGISRFKQAVEEALAE 439 (442)
T ss_pred EEeecCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9976432 13579998877 49999999999999999876443
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-14 Score=146.98 Aligned_cols=330 Identities=11% Similarity=0.106 Sum_probs=210.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCC---CCCcEEEeCChHHHHHHHHHHhcC-----------CCCEEEEccCCCc
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTF---DTSKIVLTAGATSANETLMFCLAE-----------PGEAFLLPTPYYP 146 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~---~~~~i~~t~G~~~al~~~~~~l~~-----------~gd~Vl~~~P~y~ 146 (469)
.|...++..++++.+.+|+.+.++..-.. ....-++++|+++++..++.+... +.-.|++.+-+|.
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~ 240 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS 240 (539)
T ss_pred CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH
Confidence 34445567899999999999987732100 013467789999988877665422 1225556777888
Q ss_pred ChHHHHhhhCCC---EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc
Q 043923 147 GFDRDLKWRTGV---EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK 223 (469)
Q Consensus 147 ~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~ 223 (469)
++..++... |+ .++.||++..+++.+|+++|+++|++....+..+-+|+.+-..-+||.+=| +++|+++|++|
T Consensus 241 Sv~KAa~il-Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp---l~~Ia~i~~~~ 316 (539)
T PLN02590 241 SFRKACLIG-GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP---LVPLGNIAKKY 316 (539)
T ss_pred HHHHHHHHc-CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHh
Confidence 888888877 87 588899886567899999999999876555556666777767788998866 56689999999
Q ss_pred CeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-HHHHHHH----h
Q 043923 224 NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-VVAAATK----M 298 (469)
Q Consensus 224 ~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-~~~~~~~----~ 298 (469)
|+++.+|.||++...-.+. ...+... ...-.-+..+++|.+. ....+|.++..+.. +.+.+.. +
T Consensus 317 g~WlHVDaA~GG~al~~~~---~r~~~~G-------ie~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL 385 (539)
T PLN02590 317 GIWLHVDAAYAGNACICPE---YRKFIDG-------IENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYL 385 (539)
T ss_pred CCeEEEecchhhhhhcChh---hHHHhcC-------CccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHh
Confidence 9999999999976432222 2223221 1223444569999986 77899999887643 2222211 0
Q ss_pred c-------------ccc-cC----cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE
Q 043923 299 S-------------SFG-LV----SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF 359 (469)
Q Consensus 299 ~-------------~~~-~~----s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~ 359 (469)
. .+. .. ..+..+++.+.+. .+-+++..++..+..+++.+.+++. ++++..+..-..
T Consensus 386 ~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G-----~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~i 460 (539)
T PLN02590 386 EFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYG-----SENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSL 460 (539)
T ss_pred CCcccccccCCCccccCCCCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEE
Confidence 0 000 01 1122222333322 3345666666677778888888877 688766555456
Q ss_pred EEEeccccccc-CCh-hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC--CHHHHHHHHHHHHHHHHhhcc
Q 043923 360 CWVDMRHLLRS-NTF-EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM--SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 360 ~~v~~~~~~~~-~~~-~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~--~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+++++...... ... ....++.+++.+. |......... .+..++|+++... ++++++.+++.|.+...+..+
T Consensus 461 VcFr~~~~~~~~~~~~~ln~~l~~~l~~~-G~~~vs~t~~--~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~ 535 (539)
T PLN02590 461 VCFRLAPVDGDEDQCNERNRELLAAVNST-GKIFISHTAL--SGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR 535 (539)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEeeEE--CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 66665421111 000 1123455555544 5444332222 2345899999763 799999999999998887766
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-15 Score=159.50 Aligned_cols=310 Identities=15% Similarity=0.125 Sum_probs=205.4
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChH----HHHHHHHHHhcCC-CC----EEEEccCCCcChHHHHhhhC
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGAT----SANETLMFCLAEP-GE----AFLLPTPYYPGFDRDLKWRT 156 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~----~al~~~~~~l~~~-gd----~Vl~~~P~y~~~~~~~~~~~ 156 (469)
+|+.++...+.+++.+.+| .+.|.++++++ +++..+++++.++ || .|+++...|......+...
T Consensus 564 ~g~~~~~~~~r~~la~i~g------~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~- 636 (993)
T PLN02414 564 QGYQEMFEDLGDLLCEITG------FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMC- 636 (993)
T ss_pred HHHHHHHHHHHHHHHHHhC------CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHC-
Confidence 4666555555555555544 38999999999 8999999998866 88 8999999999888888877
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|++++.+|++.+ ..+|+++|++.+++. ..++++|++++|+|-+|...+ +++|.++|+++|+++++|.++...
T Consensus 637 G~~vv~v~~d~~--G~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a 708 (993)
T PLN02414 637 GMKIVVVGTDAK--GNINIEELRKAAEAH---KDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNA 708 (993)
T ss_pred CCEEEEeccCCC--CCcCHHHHHHHHhcc---CCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHh
Confidence 999999999743 368999999999741 126899999999999999877 555888899999999999998531
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC----CCcceEEEEEecCHHHHHHHHH------------hc-
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG----LPGFRVGAIYSNDDMVVAAATK------------MS- 299 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g----~~GlRiG~li~~~~~~~~~~~~------------~~- 299 (469)
... ..... ..+..+++.|.+|+|+ ..|-.+|++.+.+. +...+-. ..
T Consensus 709 ~~~---l~~p~------------~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~-L~p~lPg~~v~~~~~~~~r~~~ 772 (993)
T PLN02414 709 QVG---LTSPG------------FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVPTGGIPRPEKT 772 (993)
T ss_pred ccC---cCCcc------------ccCCCEEEecCCccCCcCcccCCCCeeeEEEchh-hcccCCCCccccCCCcccccCC
Confidence 111 11111 2366788889999875 34456899877443 2221110 01
Q ss_pred -ccccCcH------HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecccccc
Q 043923 300 -SFGLVSS------QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLR 369 (469)
Q Consensus 300 -~~~~~s~------~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~--~~v~~~~~~~ 369 (469)
..++++. .....+..++.... .+.+++..+....+..++.+.|.+. ++.+..+.+.+| +.++++....
T Consensus 773 s~iGt~~~a~~g~al~l~~A~~yi~~lG--~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~ 850 (993)
T PLN02414 773 QPLGTISAAPWGSALILPISYTYIAMMG--SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKN 850 (993)
T ss_pred CCcCCccchhhhhHHHHHHHHHHHHHHC--HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEecccccc
Confidence 0122221 11122233333322 3446666677777888899989764 444433333221 2234442111
Q ss_pred cCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 370 SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 370 ~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
... ....++.++|+ ++||..-- ..| + .++.+||+... .+++++++++++|..+..+.++
T Consensus 851 ~~g-~~~~di~krL~-d~Gihapt-~~~-p-v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 851 TAG-IEPEDVAKRLM-DYGFHAPT-MSW-P-VPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred ccC-CCHHHHHHHHH-HcCcEEee-ecc-c-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 101 12245778877 78998654 334 2 47789999976 3899999999999998877764
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-14 Score=146.41 Aligned_cols=350 Identities=14% Similarity=0.102 Sum_probs=192.4
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+ .+.+. .+.+.+++++..+ ....+.......+....+|+.+.+... ...+
T Consensus 51 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~-------------~~~~~~~~~~~~~~~~~la~~l~~~~p----~~~~ 113 (460)
T PRK06541 51 GKRYLDGLAGLFVVQVGHGRAELAEAAAKQAG-------------TLAFFPLWSYAHPPAIELAERLAALAP----GDLN 113 (460)
T ss_pred CCEEEECCccHHhccCCCCCHHHHHHHHHHHh-------------hCcCccccccCCHHHHHHHHHHHHhCC----CCcC
Confidence 4457888765 33443 4666666665311 111111111112334445555543321 1246
Q ss_pred cEEEeCChHHHHHHHHHHhcC--------CCCEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCC---
Q 043923 113 KIVLTAGATSANETLMFCLAE--------PGEAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLN--- 169 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~--------~gd~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~--- 169 (469)
.+++++++++|++.+++.... ...+|+...-+|++....+....|.. +..+|.+...
T Consensus 114 ~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 193 (460)
T PRK06541 114 RVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAP 193 (460)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCcccccc
Confidence 899999999999998876431 13678888888877643322111211 2222221100
Q ss_pred CcccCH--------HHHHHHHHHHHhcCCceeEEEEecC-CCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 170 GFQITE--------TAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 170 ~~~~d~--------~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
.|.-+. +.+++.++.. +++..+.++..| .+++|.+. +.+.+++|.++|++||+++|.||++.++.-.
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~ 270 (460)
T PRK06541 194 ELGDDPEAFGRWAADRIEEAIEFE---GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRL 270 (460)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhc---CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC
Confidence 011122 4455554421 223334555667 88899876 4888999999999999999999999764111
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHHHhcc-----cccCcHHHHHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKMSS-----FGLVSSQTQYLLS 313 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~ 313 (469)
+..+ . .+... ..+.++ ++||.+| .|+ ++|+++++++........... ....++++..++.
T Consensus 271 G~~~-a-~~~~g--------v~PDiv---t~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaal 336 (460)
T PRK06541 271 GEMF-G-CERFG--------YVPDII---TCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVAL 336 (460)
T ss_pred chhh-h-hhhcC--------CCCCEE---Eeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHH
Confidence 1111 1 11111 122333 5899998 897 999999965543332211111 1124556655555
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCce---ecCCceEEEEEecccccccC-Ch-----hH-H-HHHHH
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISC---LKSNAGLFCWVDMRHLLRSN-TF-----EA-E-MELWK 381 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v---~~~~~g~~~~v~~~~~~~~~-~~-----~~-~-~~l~~ 381 (469)
+.|+... .+...+.++++.++|.+.|+++ ...+ .... |.++.+.+....... .+ .. . ..+..
T Consensus 337 a~l~~l~-----~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (460)
T PRK06541 337 ANLDIFE-----REGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGD-GYFYGIELVKDKATKETFTDDESERLLRGFLSP 410 (460)
T ss_pred HHHHHHH-----hccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec-ceEEEEEEecCcccccCCcchhhhhhHHHHHHH
Confidence 5544211 1123455566667777777665 2222 2233 466667764211000 00 00 1 13344
Q ss_pred HHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 382 KIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.++ ++||.+.+.. .+...+|++... ++++++++++++|.+++++.
T Consensus 411 ~l~-~~Gi~~~~~~----~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 411 ALF-EAGLYCRADD----RGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred HHH-hCCeEEEecC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 554 6799998631 124579999986 49999999999999999754
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-14 Score=141.88 Aligned_cols=355 Identities=14% Similarity=0.067 Sum_probs=206.0
Q ss_pred CCCCCCeeeeeccccc--cC--hHHHHHHHhcCCCccccccCCccccc-ccccCCCCCCcHHHHHHHHHHHHhHcCCCCC
Q 043923 34 VQNPTGIIQMGLAENQ--LS--FDLLESWLDRNPDAAGFKRDGQSIFR-ELALFQDYHGLPAFKKALVEFMSEIRGNKVT 108 (469)
Q Consensus 34 ~~~~~~~i~L~~~~n~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~ 108 (469)
+.....+|||..+.+. +. .|.+.+++++..+. +. ....|..+ +-..++|+.+.....
T Consensus 52 DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~----------~~h~~~~~~~~----e~~v~~ae~L~~~~p---- 113 (447)
T COG0160 52 DVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAK----------LNHTHTRDLYY----EPYVELAEKLTALAP---- 113 (447)
T ss_pred eCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHH----------hhcccCCcccc----hhHHHHHHHHHHhCC----
Confidence 3344568999985443 33 46677777663211 11 11223222 444445555443321
Q ss_pred C-CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCC-------------CEEEEeecc--CCCC
Q 043923 109 F-DTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTG-------------VEIVPIQCT--SLNG 170 (469)
Q Consensus 109 ~-~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g-------------~~~~~v~~~--~~~~ 170 (469)
- ..+.+++++++++|++.+++... ..+..|+...-.|++.........| -.++.+|.. ..+.
T Consensus 114 ~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p 193 (447)
T COG0160 114 GSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCP 193 (447)
T ss_pred cccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCc
Confidence 2 35679999999999999998752 2346688888887765433211111 124444443 1121
Q ss_pred ccc--------CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 171 FQI--------TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 171 ~~~--------d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
|.. ..+.++..+........++.++|+..-+.-.|. +.|.+-++++.++|++||+++|+||+..++--.+
T Consensus 194 ~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG- 272 (447)
T COG0160 194 FGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG- 272 (447)
T ss_pred ccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-
Confidence 221 123344444433333446777666644777776 5677788999999999999999999999843333
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-hcccccCcHHHHHHHHHHhcCch
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-MSSFGLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-~~~~~~~s~~~q~~~~~~l~~~~ 320 (469)
.+..+-.. +..+.++ ++||.+| .|+.+|.++.. +.+...... ....+..++++..++.+.|+..+
T Consensus 273 ~~fa~E~~---------gv~PDiv---t~aK~ig-~G~Pl~avv~r-~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie 338 (447)
T COG0160 273 KMFAFEHF---------GVEPDIV---TLAKSLG-GGLPLSAVVGR-AEIMDWPPGGHGGTFGGNPVACAAALAVLDVIE 338 (447)
T ss_pred cchhhhhc---------CCCCCEE---Eeccccc-CCCceeEEecc-HHhcccCCcccCCCCCcCHHHHHHHHHHHHHHH
Confidence 22221111 1223444 7899999 79999999994 444442211 22223467788777777776332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc--CCceecC--CceEEEEEeccccccc--CChhHHHHHHHHHHHhCCeEEeCC
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKS--NAGLFCWVDMRHLLRS--NTFEAEMELWKKIVYDVKLNISPG 394 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~v~~~--~~g~~~~v~~~~~~~~--~~~~~~~~l~~~ll~~~GI~v~pg 394 (469)
- +...++..+.-+++.+.|.++ ..+++.. --|+++.+++-..... ........++.++. ++|+.+..+
T Consensus 339 ~-----e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~-~~Glil~~~ 412 (447)
T COG0160 339 E-----ENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAF-ERGLLLLTC 412 (447)
T ss_pred H-----ccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHH-HcCCEEecc
Confidence 1 123333333444455555443 1222222 2358888887643211 12233345555555 669988865
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 395 SSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 395 ~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
..+ .+.+||.... +++++++++++.|.+++++.
T Consensus 413 G~~----~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 413 GPH----GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred CCC----CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 433 4689999876 49999999999999998763
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-14 Score=138.94 Aligned_cols=337 Identities=17% Similarity=0.175 Sum_probs=187.3
Q ss_pred CeeeeeccccccChHHHHHHHhcCC-CccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE--
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNP-DAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV-- 115 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~-- 115 (469)
..|+|-..||..++. +.+++.... ... .++ ...-.-|+...-.+++.+...+...+.|+ .+++...
T Consensus 21 ~~l~LiaSEN~~Sp~-v~~al~S~l~nky---aeg---~pg~ryy~G~~~id~iE~la~~ra~~lF~----~~~~~w~an 89 (399)
T PF00464_consen 21 STLNLIASENYMSPA-VREALGSDLTNKY---AEG---YPGKRYYGGCEYIDEIEELAIERAKELFG----AEPKEWYAN 89 (399)
T ss_dssp HSEE-CTT-----HH-HHHHHTSGGGGS----TTE---ETTEESSSSTHHHHHHHHHHHHHHHHHHT-----STTTEEEE
T ss_pred cCccccCcccccCHH-HHHHhCCcceeec---ccc---CCCcccccCcchhhHHHHHHHHHHHHHhC----CCcccceEE
Confidence 358888888886653 334433310 000 011 11122344444456666666666666666 4544333
Q ss_pred -EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH---H-------hhhCCCEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 116 -LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD---L-------KWRTGVEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 116 -~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~---~-------~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
-..+++.|...++.+|++|||+|+..++...++... . .-. ..++++++++++ ...+|.+++++.+.+
T Consensus 90 vqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~-~~~~~~y~~d~~-~~~ID~d~l~~~a~~ 167 (399)
T PF00464_consen 90 VQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGL-YFESVPYPVDPD-TGLIDYDELEKLAKE 167 (399)
T ss_dssp ---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHH-HSEEEEEEB-TT-TSSB-HHHHHHHHHH
T ss_pred eecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccc-eEEEEeeeeecC-CCeECHHHHHHHHhh
Confidence 245677788999999999999999999877665321 1 112 467888888853 568999999999987
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
. ++++|++...+.|- .+ +.+++.++|.+.|.+++.|-+|....-.+..+++.... -.
T Consensus 168 ~-----kPklIi~G~S~y~~--~~---d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-------------AD 224 (399)
T PF00464_consen 168 H-----KPKLIICGASSYPR--PI---DFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-------------AD 224 (399)
T ss_dssp H-------SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-------------SS
T ss_pred c-----CCCEEEECchhccC--cc---CHHHHHHHHHhcCcEEEecccccccceehheecCcccc-------------ce
Confidence 6 89987776433322 23 45667888889999999999996433333334444333 34
Q ss_pred EEEccCccccCCCcceEEEEEec-------------CHHHHHHHHHhcccccCc-H-HHH-HHHHHHhcCchhhHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSN-------------DDMVVAAATKMSSFGLVS-S-QTQ-YLLSALLSDKKFTQNYISE 328 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~-------------~~~~~~~~~~~~~~~~~s-~-~~q-~~~~~~l~~~~~~~~~~~~ 328 (469)
++.+|.+|+| +|-|-|.|++. +..+.+.+.+..-++..+ + ... .+.+.++.. ......++
T Consensus 225 vvt~sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~e--a~~~~fk~ 300 (399)
T PF00464_consen 225 VVTGSTHKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKE--ALSPEFKE 300 (399)
T ss_dssp EEEEESSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHH--HTSHHHHH
T ss_pred EEEeeccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhc--ccCHHHHH
Confidence 7789999998 88899999996 366777666544333222 2 111 122222222 11222356
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCCCC
Q 043923 329 NKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPG 403 (469)
Q Consensus 329 ~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~~~ 403 (469)
..+++.++.+.|.+.|.+.|+++.. ...+..+|+++..... +...++..|++.||.+. |+.. .+..++
T Consensus 301 Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~------~g~~a~~~Le~~gI~vnkn~iP~d~-~~~~~s 373 (399)
T PF00464_consen 301 YAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGI------DGKEAEKALEEAGIIVNKNTIPGDR-SPFVPS 373 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-------HHHHHHHHHHTTEE-EEE--TTTS-TTTT-S
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEeccccc------chHHHHHHHHhcCeeecccccCCCC-CCCCCC
Confidence 6667778889999999999999874 3345678899864210 11346677889999985 4431 112346
Q ss_pred eEEEEeec-----CCHHHHHHHHH
Q 043923 404 WFRVCFAN-----MSEDTLKLSMQ 422 (469)
Q Consensus 404 ~iRi~~~~-----~~~e~i~~~l~ 422 (469)
.+||+... ..+++++++.+
T Consensus 374 GlRlGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 374 GLRLGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp EEEEESHHHHHTT--HHHHHHHHH
T ss_pred EEEECCHHHHhCCCCHHHHHHHHh
Confidence 79999843 25566665544
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-13 Score=141.00 Aligned_cols=294 Identities=12% Similarity=0.098 Sum_probs=166.1
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCCCC--cc-c
Q 043923 112 SKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSLNG--FQ-I 173 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~~--~~-~ 173 (469)
+.|++++++++|+..+++... .....|+...-.|++....+....+. .++.+|.+.... +. .
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEP 183 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 589999999999999988642 12356787787777754322111121 122333221000 00 1
Q ss_pred CH-------HHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 174 TE-------TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 174 d~-------~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
+. +.+++.++... ...++.+|++.......|.+ .+.+.+++|.++|++||+++|.||++.++...+.. .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~--~ 260 (445)
T PRK08593 184 DANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKW--S 260 (445)
T ss_pred cHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchH--H
Confidence 11 22332222110 12367776666556667876 78999999999999999999999999864222211 1
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-cc-ccCcHHHHHHHHHHhcCchhhH
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SF-GLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-~~-~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
..+... ..+. +-+++|.+| .|+++|+++++ +.+.+.+.... .+ ...++++..++.+.|+..+- .
T Consensus 261 a~~~~g--------v~pD---i~t~gK~l~-~G~p~gav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~ 326 (445)
T PRK08593 261 SISHFN--------ITPD---LMSFGKSLA-GGMPMSAIVGR-KEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-E 326 (445)
T ss_pred HHHhcC--------CCCC---Eeeeccccc-CCcccEEEEEc-HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 111111 1122 237899998 88999999995 44444443211 11 22566666666666543211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEeccccc--ccCChhHHHHHHHHHHHhCCeEEeCCCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLL--RSNTFEAEMELWKKIVYDVKLNISPGSSC 397 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~--~~~~~~~~~~l~~~ll~~~GI~v~pg~~f 397 (469)
...++.++.-++|.+.|++ +++......-|+++.+.+.... ..........++..++ ++||.+.+..
T Consensus 327 ----~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~~-- 399 (445)
T PRK08593 327 ----SLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCF-EHGVVIIAVA-- 399 (445)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHH-HCCeEEeccC--
Confidence 1223333333444444443 3332222233566666664211 1111122334555555 6799987531
Q ss_pred CCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 398 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 398 ~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+.+|++.+. +++++++++++++.+++++..+
T Consensus 400 ----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 400 ----GNVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred ----CCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 3479998877 4999999999999999987755
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-14 Score=133.15 Aligned_cols=349 Identities=14% Similarity=0.156 Sum_probs=223.3
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
..|.|-..||-.++...+..-........ +| +..-+-|+...-.+++++...+..++.|+ .+--+|-..+
T Consensus 27 ~~ieLIASEN~~S~aV~~A~gS~ltnKYA---EG---yPgkRyYgGce~VD~vE~laierak~LFg----a~~anVQPhS 96 (413)
T COG0112 27 EHIELIASENFTSPAVMEAQGSDLTNKYA---EG---YPGKRYYGGCEYVDEVEELAIERAKKLFG----AEYANVQPHS 96 (413)
T ss_pred hceeeeeccccCCHHHHHHHhhhhhhccc---cC---CCCccccCCCeeHHHHHHHHHHHHHHHhC----CCccccCCCC
Confidence 45888888888776543332222111100 11 22233466565566777777777777766 5566777777
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH---hhhCCC--EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL---KWRTGV--EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~---~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++ |...++.+|++|||+|+-.+-.+.++..-- ... |. ++++++++.+ ...+|.|++++...+. ++|
T Consensus 97 Gs~-AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~s-G~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~-----kPK 168 (413)
T COG0112 97 GSQ-ANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFS-GKLFNVVSYGVDPE-TGLIDYDEVEKLAKEV-----KPK 168 (413)
T ss_pred chH-HHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCcc-ceeEEeEecccccc-cCccCHHHHHHHHHHh-----CCC
Confidence 765 566677899999999999888877764321 111 33 5666677643 4579999999998875 999
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|+.-....| ...+ ++++.++|.+.|.++++|-+|....-.+..+++... ...++.+|.+|+
T Consensus 169 ~ii~G~SaY~--r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~-------------~AdvVTtTTHKT 230 (413)
T COG0112 169 LIIAGGSAYS--RPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP-------------HADVVTTTTHKT 230 (413)
T ss_pred EEEECccccc--cccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC-------------ccceEeCCcccC
Confidence 8776432222 2334 666777777999999999999533333333344332 245788999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHH-HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQ-YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q-~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
| .|-|-|.|++.+..+.+.+++.--++..+.+.+ .+++.+..-.+.++...++..+++.++.+.|.+.|.+.|+++.
T Consensus 231 l--rGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vv 308 (413)
T COG0112 231 L--RGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVV 308 (413)
T ss_pred C--CCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEe
Confidence 8 888999999977677776665443443333222 2222222221221223456667777888999999999999887
Q ss_pred cC-CceEEEEEecccc-cccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHHHHHH
Q 043923 353 KS-NAGLFCWVDMRHL-LRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN-----MSEDTLKLSM 421 (469)
Q Consensus 353 ~~-~~g~~~~v~~~~~-~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~~~~iRi~~~~-----~~~e~i~~~l 421 (469)
.. ..+..+.+++... ... ..++.+|.+.||.+. |...-.+..++.|||.... ..++++++..
T Consensus 309 sGgTdnHl~lVDl~~~~~~G-------k~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia 381 (413)
T COG0112 309 SGGTDNHLVLVDLRSKGLTG-------KKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIA 381 (413)
T ss_pred cCCccceEEEEEcccCCCCH-------HHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHH
Confidence 53 3345667888731 122 346778889999986 3332222335679998733 3678999999
Q ss_pred HHHHHHHHhhc
Q 043923 422 QRLKAFVDSIT 432 (469)
Q Consensus 422 ~~L~~~l~~~~ 432 (469)
+-|.++++..+
T Consensus 382 ~~I~~vl~~~~ 392 (413)
T COG0112 382 DLIADVLDGLK 392 (413)
T ss_pred HHHHHHHhccc
Confidence 99999988765
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-14 Score=140.28 Aligned_cols=171 Identities=17% Similarity=0.316 Sum_probs=133.0
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
..++.+++|+|++ ..+.+.++++|.|+.+++.+| ..|||.|+++.-+|......+... |++++.+++|
T Consensus 36 v~~FE~~~ae~~G----------~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~-Ga~PVFvDid 104 (374)
T COG0399 36 VRRFEQAFAEYLG----------VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLV-GAKPVFVDID 104 (374)
T ss_pred HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHc-CCeEEEEecC
Confidence 4899999999986 667888999999999999966 589999999999999988888877 9999999998
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCccc
Q 043923 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFVS 245 (469)
Q Consensus 167 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~s 245 (469)
+ +.|++|++.++++|++ ++|+|+.. +-.|...+ +++|.++|++||++||+|.+++... |.+....
T Consensus 105 ~-~T~nid~~~ie~aIt~------~tKAIipV---hl~G~~~d---m~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vG- 170 (374)
T COG0399 105 P-DTLNIDPDLIEAAITP------RTKAIIPV---HLAGQPCD---MDAIMALAKRHGLPVIEDAAQAHGATYKGKKVG- 170 (374)
T ss_pred C-cccCCCHHHHHHHccc------CCeEEEEe---hhccCCCC---HHHHHHHHHHcCCeEEEEcchhccCeecCcccc-
Confidence 6 5789999999999986 79998855 44566655 5557788889999999999997321 2222111
Q ss_pred hhhhhhccccccCCcCCeEEEEccC--ccccCCCcceEEEEEecCHHHHHHHHHhcc
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSL--SKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~GlRiG~li~~~~~~~~~~~~~~~ 300 (469)
..+ .+.+.|| +|.++ .| --|.++++++.+.+..+.++.
T Consensus 171 --------------t~G-d~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~ 210 (374)
T COG0399 171 --------------SFG-DIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRN 210 (374)
T ss_pred --------------ccc-ceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHH
Confidence 111 2334455 79997 55 669999998888776665543
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-14 Score=141.52 Aligned_cols=207 Identities=14% Similarity=0.172 Sum_probs=140.1
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH----HHHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD----RDLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~~g~~~~~ 162 (469)
...+|.+.+|++.+ .+..+++++++.||.+++.+++++||.|+++.+.|.... ..+... |++++.
T Consensus 65 ~~~~lE~~la~leg----------~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~-Gi~v~f 133 (384)
T PRK06434 65 TVQAFEEKYAVLEN----------AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTL-GIHVDY 133 (384)
T ss_pred hHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhc-CcEEEE
Confidence 45778888888774 456788888889999999999999999999988776654 334455 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+..+.+.++. .++++|++..|+|||+.+.+ +++|.++|++++ +++|.+++.. +...+
T Consensus 134 vd~~~~~~~~l~~--------------~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~~~p 193 (384)
T PRK06434 134 IDTDRLNSLDFDP--------------SNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YNQNP 193 (384)
T ss_pred ECCCChhheeecC--------------CCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-ccCCc
Confidence 9876423333221 16899999999999999876 666888888998 4669997532 22221
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhc-cccc-CcHHHHHHHHHHhcCc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMS-SFGL-VSSQTQYLLSALLSDK 319 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~-~~~~-~s~~~q~~~~~~l~~~ 319 (469)
+ ..+-.+++.|.+|.++-+| .-.|.+++.++.+.+.+.... .++. .++...+.+.+-|+.
T Consensus 194 ------l----------~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t- 256 (384)
T PRK06434 194 ------L----------DLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT- 256 (384)
T ss_pred ------h----------hcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc-
Confidence 1 1145688889999996444 446777776665555444332 3332 344444444444433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+..+.++..++...+.+.|+.+
T Consensus 257 ------L~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 257 ------LGLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHcC
Confidence 3455556666777788888876
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-14 Score=144.61 Aligned_cols=347 Identities=12% Similarity=0.059 Sum_probs=196.4
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+ ...+. .+.+.+++.+..+. ......|- ..+.+..+|+.+.+... -..+
T Consensus 81 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~----------l~~~~~~~----~~~~~~~lae~L~~~~p----~~~~ 142 (459)
T PRK11522 81 GQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAK----------QPLHSQEL----LDPLRAMLAKTLAALTP----GKLK 142 (459)
T ss_pred CCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhh----------Cccccccc----CCHHHHHHHHHHHHhCC----CCCC
Confidence 3457888766 44453 46666666653211 01111121 13445555665543321 1246
Q ss_pred cEEEeCChHHHHHHHHHHhc---C-CC-CEEEEccCCCcChHHHHhhhCCCEEEE---eeccCC---CCcccCHHHHHHH
Q 043923 113 KIVLTAGATSANETLMFCLA---E-PG-EAFLLPTPYYPGFDRDLKWRTGVEIVP---IQCTSL---NGFQITETAIEEA 181 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~---~-~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~---v~~~~~---~~~~~d~~~l~~~ 181 (469)
.+++++++++|+..+++... . .| ..|+.....|++....+....+..... .|..+. -.| .|.+++++.
T Consensus 143 ~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~ 221 (459)
T PRK11522 143 YSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-GNIEAMRTA 221 (459)
T ss_pred EEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-CCHHHHHHH
Confidence 89999999999999988753 1 22 468888888877654332221221111 111000 001 167888888
Q ss_pred HHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCc
Q 043923 182 YQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQV 260 (469)
Q Consensus 182 i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~ 260 (469)
++.....+.++.+|++..-..-.|.. .|.+.++++.++|++||+++|+||++.++.-.+.. .. .+... .
T Consensus 222 l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~-~a-~e~~g--------v 291 (459)
T PRK11522 222 LSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKM-FA-CEHEN--------V 291 (459)
T ss_pred HHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchh-hh-hhccC--------C
Confidence 76432223356665555435556764 57778999999999999999999999763111211 11 11111 1
Q ss_pred CCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH--h--cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 043923 261 WNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--M--SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 261 ~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~--~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 335 (469)
.+.++ +++|.+| .| +.+|.+++.++ +.+.+.. . ...+..++++..++.+.|+..+- +...++.++
T Consensus 292 ~PDiv---t~gK~lg-gG~~Pigav~~~~~-i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~-----~~l~~~~~~ 361 (459)
T PRK11522 292 QPDIL---CLAKALG-GGVMPIGATIATEE-VFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE-----QNLPAQAEQ 361 (459)
T ss_pred CCCEE---Eechhhh-CCCccceeEEEcHH-HHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc-----chHHHHHHH
Confidence 12222 7899998 88 69999999544 4333321 1 11112366666666555543211 122334444
Q ss_pred HHHHHHHHHHhc--CCc-e--ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee
Q 043923 336 RHRKLVSGLEKA--GIS-C--LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 410 (469)
Q Consensus 336 ~~~~l~~~L~~~--g~~-v--~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~ 410 (469)
.-++|.+.|+++ ... + .....|.++.+.+... .....++..++ ++||.+.+.. .....+|+..+
T Consensus 362 ~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~------~~~~~i~~~l~-~~Gvl~~~~~----~~~~~lr~~Pp 430 (459)
T PRK11522 362 KGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMF-RQRVLVAGTL----NNAKTIRIEPP 430 (459)
T ss_pred HHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc------hHHHHHHHHHH-HCCeEEEecC----CCCCEEEEECC
Confidence 445555555543 121 1 1112357887887532 11224555555 5799997542 12467999987
Q ss_pred c-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 411 N-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 411 ~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
. ++++++++++++|.+++++..+
T Consensus 431 l~~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 431 LTLTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 5999999999999999987766
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-14 Score=144.76 Aligned_cols=210 Identities=17% Similarity=0.253 Sum_probs=142.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~~g~~~~~v 163 (469)
...+++.+|++++ ..+.|++++|. .|+.+++.+++++||+|+++...|.+... .+... |+++..+
T Consensus 71 ~~~le~~la~l~g---------~~~~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~-Gi~v~~v 139 (437)
T PRK05613 71 VEALENRIASLEG---------GVHAVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRL-GIEVTFV 139 (437)
T ss_pred HHHHHHHHHHHhC---------CCeEEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhc-CeEEEEE
Confidence 4778888888875 23445555555 88888888888999999999999987742 33555 9999988
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+ +. .|++.+++++++ ++++|++..|.||+|.+.+ +++|.++|+++|+++|+|.+++....
T Consensus 140 d-~~-----~d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~----- 199 (437)
T PRK05613 140 E-NP-----DDPESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL----- 199 (437)
T ss_pred C-CC-----CCHHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc-----
Confidence 7 32 277889988875 7889999999999999888 55588888899999999999863211
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEe-cCHH--------------------------------
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS-NDDM-------------------------------- 290 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~-~~~~-------------------------------- 290 (469)
.....+ +..+++.|++|.++-.|--+|-+++ +...
T Consensus 200 ~~p~~~------------GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (437)
T PRK05613 200 VRPLEL------------GADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGA 267 (437)
T ss_pred cChHHh------------CCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccch
Confidence 111122 4568889999999755655555444 2110
Q ss_pred ---HHHHH-HHhcccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 291 ---VVAAA-TKMSSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 291 ---~~~~~-~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.+.. ......+ ..++...+.+.+-|+. +.-+.++..++...+.+.|+++
T Consensus 268 ~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~nA~~lA~~L~~h 322 (437)
T PRK05613 268 PAFGLKARAGLLRDTGATLSPFNAWVTAQGLDT-------LSLRLERHNENAIKVAEFLNNH 322 (437)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 00011 1112222 3556665555555544 3445566677888899999887
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-13 Score=140.26 Aligned_cols=308 Identities=14% Similarity=0.079 Sum_probs=193.3
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCC----CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH-----
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDT----SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----- 152 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~----~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----- 152 (469)
|+....++++.....+...+.|+ .+. -+|-.- +++.|+.+++.+|++|||+|+..+..|.++....
T Consensus 186 y~G~~~iD~iE~la~era~~lF~----~~~~~~gaNVQp~-SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~ 260 (586)
T PLN02271 186 YTGNQYIDQIERLCCERALAAFG----LDSEKWGVNVQPY-SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPG 260 (586)
T ss_pred CCCChhHHHHHHHHHHHHHHHhC----Ccccccccceeec-cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhccccccc
Confidence 44445556676666666666655 333 455555 5666778888999999999999888777764321
Q ss_pred ----hhhCCCEEEEee--ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeE
Q 043923 153 ----KWRTGVEIVPIQ--CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIH 226 (469)
Q Consensus 153 ----~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~ 226 (469)
... |+.+..+| ++. ....+|.+++++.... .++++|++..-.+| ..++.+ ++.++|+++|++
T Consensus 261 g~~vs~s-G~~~~~vpY~~d~-~~g~IDyd~lek~a~~-----~rPKLII~g~Sayp--r~~D~~---~i~eIAdevGA~ 328 (586)
T PLN02271 261 GKKVSGA-SIFFESLPYKVNP-QTGYIDYDKLEEKALD-----FRPKILICGGSSYP--REWDYA---RFRQIADKCGAV 328 (586)
T ss_pred ccccccc-cceEEEEEccccc-ccCccCHHHHHHHhhh-----cCCeEEEECchhcc--CcCCHH---HHHHHHHHcCCE
Confidence 222 65555444 543 3456899999985433 28998888766777 556655 477788899999
Q ss_pred EEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCH-----------------
Q 043923 227 LISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD----------------- 289 (469)
Q Consensus 227 iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~----------------- 289 (469)
+++|.++.........+++.. ....++.+|.+|++ .|-|-|.|++.+.
T Consensus 329 LmvD~AH~aGLIa~g~~~sP~-------------~~aDvvt~TTHKtL--rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~ 393 (586)
T PLN02271 329 LMCDMAHISGLVAAKECVNPF-------------DYCDIVTSTTHKSL--RGPRGGIIFYRKGPKLRKQGMLLSHGDDNS 393 (586)
T ss_pred EEEECcccccccccCcCCCCC-------------cCCcEEEeCCcccC--CCCCceEEEecccccccccCCccccccccc
Confidence 999999974433332222211 13457889999998 5667788887542
Q ss_pred --HHHHHHHHhccccc-CcHH--HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEe
Q 043923 290 --MVVAAATKMSSFGL-VSSQ--TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVD 363 (469)
Q Consensus 290 --~~~~~~~~~~~~~~-~s~~--~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~ 363 (469)
.+.+.+....-++. .++. ...+.+..+..... .++ +...+++.++.+.|.+.|.+.|+++.. ...+..++++
T Consensus 394 ~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~-~ef-k~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvD 471 (586)
T PLN02271 394 HYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVAT-PEY-KAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWD 471 (586)
T ss_pred cHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhC-hHH-HHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeec
Confidence 12232322211121 1111 12222333332111 222 455667777889999999999998764 3445678889
Q ss_pred cccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC---CCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHH
Q 043923 364 MRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH---CTEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~---~~~~~~iRi~~~~-----~~~e~i~~~l~~L~~~l~ 429 (469)
+...- . ....+++.|++.||.+.--..++ +..++.+||+... ..++++++..+-|.++++
T Consensus 472 l~~~g-~-----~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 472 LTTLG-L-----TGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CcccC-C-----CHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 86421 0 11356788889999885322221 2235679998743 367999999988888887
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=143.15 Aligned_cols=286 Identities=15% Similarity=0.140 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhHcCCCCCC-CCCcEEEeCC-hHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEEeec
Q 043923 90 AFKKALVEFMSEIRGNKVTF-DTSKIVLTAG-ATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~-~~~~i~~t~G-~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~v~~ 165 (469)
++-+.+.+.+++.++ . +...|++++| +|+|+++++..+..+||++++..-+..+. ...++.. |+ +..+..
T Consensus 37 ~~~~~~~~~l~~l~~----~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~-g~-~~~~~~ 110 (349)
T TIGR01364 37 AVANEAESDLRELLN----IPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKY-GV-VNVVAS 110 (349)
T ss_pred HHHHHHHHHHHHHhC----CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CC-cEEEec
Confidence 444444444444433 3 2346877776 99999999999998999888776654332 3445555 88 666665
Q ss_pred cCCCCc--ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 166 TSLNGF--QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 166 ~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+...+| .+++++++. .+++++|.+++-.+.||...+ ++++.+++++++|.+.+ ++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~--------~~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss---~g~~~- 170 (349)
T TIGR01364 111 GKEGNYTKIPDPSTWEI--------SEDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSN---ILSRP- 170 (349)
T ss_pred cccCCCCCCCCHHhcCC--------CCCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEcccc---ccCcc-
Confidence 422222 244454441 137899999999999999875 45556899999999987 44433
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHH---------H----HhcccccCcHHHHH
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAA---------T----KMSSFGLVSSQTQY 310 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~---------~----~~~~~~~~s~~~q~ 310 (469)
..+..+ + +++.|..|.+|.|| +|.++.+++.+.+.. . ....+++++....+
T Consensus 171 id~~~~------------d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~ 234 (349)
T TIGR01364 171 IDVSKF------------G--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIY 234 (349)
T ss_pred CCHHHc------------c--EEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHH
Confidence 333222 3 77889999999666 788888665543210 0 01223445555555
Q ss_pred HHHHHhcCchhhHH-HHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CceEEEEEecccccccCChhHHHHHHHHHH
Q 043923 311 LLSALLSDKKFTQN-YISENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLRSNTFEAEMELWKKIV 384 (469)
Q Consensus 311 ~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~----~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll 384 (469)
++.++|+... +. -++.+.++.++..+++++.|+++ |+..... .+...+.+.+++. ....++.. .+
T Consensus 235 al~~al~~l~--~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~-~~ 305 (349)
T TIGR01364 235 VSGLVFKWLK--EQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE------ELEKRFLK-EA 305 (349)
T ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh------hHhHHHHH-HH
Confidence 5555554221 11 26778888889999999999998 5533311 2324455666532 11123333 44
Q ss_pred HhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 385 YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+.|+.+.+|.. ..+.+|+|+.. .+++|++.++++|++++++
T Consensus 306 ~~~Gi~~~~~~~----~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 306 EERGLVSLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred HHCCCcccCCcc----ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 567997777754 23589999976 4899999999999998764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.8e-14 Score=135.65 Aligned_cols=336 Identities=15% Similarity=0.160 Sum_probs=207.0
Q ss_pred CCCeeeeecccccc----ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAENQL----SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+--++ .+|.+.+++++. ...-..|+.+ .++.-.+|+.+.++.+ ..|
T Consensus 52 Gn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~-------------l~~G~~fg~P---te~Ei~~Aell~~~~p-----~~e 110 (432)
T COG0001 52 GNEYIDYVLGWGPLILGHAHPAVVEAVQEQ-------------LERGLSFGAP---TELEVELAELLIERVP-----SIE 110 (432)
T ss_pred CCEeeehhccCcccccCCCCHHHHHHHHHH-------------HHhcCCCCCC---CHHHHHHHHHHHHhcC-----ccc
Confidence 34578877664443 246678877764 2334567655 3666777788776633 458
Q ss_pred cEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCC-------------------CEEEEeeccCCCCc
Q 043923 113 KIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTG-------------------VEIVPIQCTSLNGF 171 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g-------------------~~~~~v~~~~~~~~ 171 (469)
.|-++|++|||...+++... ...|+|+..+-+|++....+....| ..++.+|++
T Consensus 111 ~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN----- 185 (432)
T COG0001 111 KVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN----- 185 (432)
T ss_pred EEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----
Confidence 99999999999999887752 2458899999999887665443212 123344433
Q ss_pred ccCHHHHHHHHHHHHhcCCceeEEEEecC--CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 172 QITETAIEEAYQLAQKRHLKVKGVLVTNP--SNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 172 ~~d~~~l~~~i~~~~~~~~~~~~vvl~~P--~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
|++.+++++++. +.++.+|++. | .| -|.+ ..++-+++|.++|++||+++|.||+..++...-........
T Consensus 186 --D~~al~~~~~~~---g~~IAaVIvE-Pv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~g 258 (432)
T COG0001 186 --DLEALEEAFEEY---GDDIAAVIVE-PVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYG 258 (432)
T ss_pred --CHHHHHHHHHHc---CCcEEEEEec-cccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccC
Confidence 789999998763 3356665544 5 45 5664 45667899999999999999999999875444232234333
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-----ccccCcHHHHHHHHHHhcCchh--
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----SFGLVSSQTQYLLSALLSDKKF-- 321 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~-- 321 (469)
+.++ +.+++|..| .|+.+|.+-+ .+++.+.+.... ...+.++++..+..+.|.....
T Consensus 259 i~PD--------------lttlGKiIG-GGlP~ga~gG-r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~ 322 (432)
T COG0001 259 VEPD--------------LTTLGKIIG-GGLPIGAFGG-RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEE 322 (432)
T ss_pred cCcc--------------hhhhhhhhc-CCcceeeecc-HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcc
Confidence 4321 348999999 9999999988 444544332221 1122466777776666553221
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEecccc-c----c--cCChhHHHHHHHHHHHhCCeEEe
Q 043923 322 -TQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRHL-L----R--SNTFEAEMELWKKIVYDVKLNIS 392 (469)
Q Consensus 322 -~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~-~g~~~~v~~~~~-~----~--~~~~~~~~~l~~~ll~~~GI~v~ 392 (469)
+.+++.+.-+ +.++-|.+.+.++|+++.... +++|- +-+... . + ..+.+.-..+...+| +.||.+.
T Consensus 323 ~~y~~l~~~~~---~L~~gl~~~~~~~g~~~~v~~~gsm~~-i~F~~~~~~n~~da~~sd~~~~~~~~~~~l-~~GV~l~ 397 (432)
T COG0001 323 GVYERLDALGE---RLAEGLRAAAERHGIPLTVNRVGSMFG-IFFTEEGVRNYADAKRSDVERFAKFFHHLL-NRGVYLA 397 (432)
T ss_pred cHHHHHHHHHH---HHHHHHHHHHHHhCCCeEEeeecceEE-EEecCCCCCCHHHHHhhchHHHHHHHHHHH-hCCcccC
Confidence 1222222222 222334455556677765433 33332 222221 1 0 011122345566666 5599999
Q ss_pred CCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 393 PGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 393 pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
|+.+ ...=+|.. +++++|++.++++.+++++..+
T Consensus 398 ps~~------ea~flS~a-hte~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 398 PSQF------EAGFLSTA-HTEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred Cccc------cceeeecc-cCHHHHHHHHHHHHHHHHHhhc
Confidence 8742 12346666 4999999999999999887653
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-14 Score=136.83 Aligned_cols=350 Identities=15% Similarity=0.161 Sum_probs=226.9
Q ss_pred Ceeeeecccccc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
-+|||-+..-.- |.+...+++... ...|........|.+.+++.++ .+.+++|
T Consensus 42 V~IDLrSDTgT~apS~~m~aAM~~G----------------DD~Y~gdpSv~~Lee~vael~G----------~E~alpt 95 (467)
T TIGR02617 42 VFIDLLTDSGTGAVTQSMQAAMMRG----------------DEAYSGSRSYYALAESVKNIFG----------YQYTIPT 95 (467)
T ss_pred eEEECccCCCCCCCCHHHHHHHHcC----------------CcccccCchHHHHHHHHHHHhC----------CceEEEC
Confidence 469999888774 777777776652 2358777788999999999986 4567888
Q ss_pred CChHHHHHHHHHHhcC-CCCEEEEccC-------C-CcChHHHHhhhCCCEEEEeecc--------CCCCcccCHHHHHH
Q 043923 118 AGATSANETLMFCLAE-PGEAFLLPTP-------Y-YPGFDRDLKWRTGVEIVPIQCT--------SLNGFQITETAIEE 180 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~-~gd~Vl~~~P-------~-y~~~~~~~~~~~g~~~~~v~~~--------~~~~~~~d~~~l~~ 180 (469)
..+..+-.+++..+++ +||.+.+..+ . |......+... |+.++.++.+ ......+|++.+++
T Consensus 96 hqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~-G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~ 174 (467)
T TIGR02617 96 HQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQIN-GCTARNVYTKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_pred CCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHc-CceeecccchhhcccccCCCCCCCcCHHHHHH
Confidence 8889999999999988 6776665443 2 22222334445 9888876432 12234689999999
Q ss_pred HHHHHHhcCCceeEEEEecCCC-CCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc--ccc-----CCCCccchhhhhhc
Q 043923 181 AYQLAQKRHLKVKGVLVTNPSN-PLGTTMSRNELNLLVNIITEKNIHLISDEIYSG--TVF-----SSPGFVSIMEILKD 252 (469)
Q Consensus 181 ~i~~~~~~~~~~~~vvl~~P~N-PtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~--~~~-----~~~~~~s~~~~~~~ 252 (469)
+|++... .++..+...--+| -.|+++|.+.++++.++|++||+.++.|.+-.. -+| ....-.++.++..+
T Consensus 175 ~I~~~g~--~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE 252 (467)
T TIGR02617 175 GIEEVGP--NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRE 252 (467)
T ss_pred HHhhcCC--CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHH
Confidence 9975311 1222222111123 358999999999999999999999999987641 011 01112455555432
Q ss_pred cccccCCcCCeEEEEccCccccCCC-cceEEEEEecCH---HHHHHHHH-------hcccccCcHHHHHHHHHHhcCchh
Q 043923 253 RNCENTQVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDD---MVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 253 ~~~~~~~~~~~~i~i~S~SK~~g~~-GlRiG~li~~~~---~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~ 321 (469)
+ ...-..+..|+||.+|+| | |++.++++ .+.+..+. +.+++..+.-...+++.-|.+.-.
T Consensus 253 ~------~~~aDsvt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~ 323 (467)
T TIGR02617 253 T------YKYADMLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN 323 (467)
T ss_pred h------hccCCEEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhccc
Confidence 2 112334456999998866 4 56666666 33232222 234555666666666655665432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccc---ccCChhHHHHHHHHHHHhCCeEEe-CCCC-
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL---RSNTFEAEMELWKKIVYDVKLNIS-PGSS- 396 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~---~~~~~~~~~~l~~~ll~~~GI~v~-pg~~- 396 (469)
.+++..+..++ ++|.+.|.+.|+++.. .||.-++++..... .... .....++.+|..+.||.-. -|+.
T Consensus 324 -~~yl~~ri~qv----~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~-fpa~al~~~ly~~~GiR~~e~G~~~ 396 (467)
T TIGR02617 324 -LDWLAYRINQV----QYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQ-FPAHALACELYKVAGIRAVEIGSLL 396 (467)
T ss_pred -HHHHHHHHHHH----HHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhh-CcHHHHHHHHHHHcCcceEeeccee
Confidence 45555544433 7788899999999988 88888888765532 2222 3445788888889999643 2332
Q ss_pred CCCC---------CCCeEEEEeec-C-CHHHHHHHHHHHHHHHHhhcc
Q 043923 397 CHCT---------EPGWFRVCFAN-M-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 397 f~~~---------~~~~iRi~~~~-~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++.+ .-..+|+++.. + |.+.++...++|..+.++...
T Consensus 397 ~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~ 444 (467)
T TIGR02617 397 LGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPN 444 (467)
T ss_pred cccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhh
Confidence 1110 12479999976 3 999999999999998876554
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=139.79 Aligned_cols=299 Identities=13% Similarity=0.117 Sum_probs=196.9
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
..+|++.+|++++ .+..++.++.--|....+..|. -||=.|+...-.+-.+...++.. ++.-+-+..
T Consensus 218 hv~LE~eLA~LHq----------K~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns-~v~K~IFrH 286 (570)
T KOG1360|consen 218 HVRLEAELADLHQ----------KEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNS-RVPKHIFRH 286 (570)
T ss_pred hhhHHHHHHHHhc----------CcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhc-CCcceeecc
Confidence 4667777777765 2223333333333333333332 27777777777777777667665 665555543
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
+ |++.|++.+++.... .+|+|-...-+..+|.+-|.|| |.+++++||.+-++||+++-..|+... ..
T Consensus 287 N-------D~~hL~~lL~~~~~s--vPKivAFEtVhSM~Gavcplee---lcDvah~yGAiTFlDEVHAVGlYG~rG-aG 353 (570)
T KOG1360|consen 287 N-------DLDHLEQLLQSSPKS--VPKIVAFETVHSMDGAVCPLEE---LCDVAHKYGAITFLDEVHAVGLYGPRG-AG 353 (570)
T ss_pred C-------CHHHHHHHHHhCCCC--CCceEEEeeeeccCCCcCCHHH---HHHHHHHhCceeeeehhhhhccccCCC-CC
Confidence 3 789999988764332 5777878888999999999666 899999999999999999866565432 12
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-cccc---CcHHHHHH---HHHHhcC
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SFGL---VSSQTQYL---LSALLSD 318 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-~~~~---~s~~~q~~---~~~~l~~ 318 (469)
+.+. +.+ .....|+.+++.|+||+-| |||.+.... .+-++.+. .|.. .++..... +.++|+.
T Consensus 354 vger-dGv------m~kvDiIsGTLgKafGcVG---GYIAat~~L-vDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~ 422 (570)
T KOG1360|consen 354 VGER-DGV------MHKVDIISGTLGKAFGCVG---GYIAATRKL-VDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKS 422 (570)
T ss_pred cccc-CCc------chhhhhcccchhhhccccc---ceehhhhhH-HHHHHHhcCceEEecCCChHHHHhHHHHHHHHhh
Confidence 2111 100 2345788899999999988 999885544 44444432 3321 22322222 2233433
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
.+ -...|+..+++.+++++.|.+.|++|.+.++ .++-+.+.+... ..+.+..|+.++||+|..-.+..
T Consensus 423 ~e-----g~~lR~~hqrnv~~~kq~l~~~GiPVi~~pS-HIiPv~vgda~l------~~~~sd~Li~~h~iYvQaINyPT 490 (570)
T KOG1360|consen 423 EE-----GRVLRRQHQRNVKYVKQLLMELGIPVIPNPS-HIIPVRVGDAAL------AKQASDILISKHNIYVQAINYPT 490 (570)
T ss_pred hh-----hHHHHHHHHHHHHHHHHHHHHcCCcccCCCc-ceeeeeccCHHH------HHHHHHHHHHhcCeEEEeccCCc
Confidence 22 2445666777888999999999999998777 566677665322 23577889999999998655433
Q ss_pred C-CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 399 C-TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 399 ~-~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
. -+...+||+.+- .+++.++.+++.|..++++..=
T Consensus 491 V~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~l 527 (570)
T KOG1360|consen 491 VARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVGL 527 (570)
T ss_pred ccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2 245579998764 4889999999999998876654
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-13 Score=140.51 Aligned_cols=336 Identities=12% Similarity=0.058 Sum_probs=189.5
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+ .+.+. .|.+.+++.+.... ......|-. .+.+..+|+.+.+... -..+
T Consensus 74 G~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~----------l~~~~~~~~----~~~~~~lAe~L~~~~p----~~~~ 135 (442)
T TIGR03372 74 GNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK----------QPLHSQELL----DPLRALLAKTLAALTP----GKLK 135 (442)
T ss_pred CCEEEECCccHHhhhcCCCCHHHHHHHHHHHHh----------CCCcccccC----CHHHHHHHHHHHHhCC----CCcC
Confidence 3457888766 55553 46666666653111 111112211 3444555555543321 1236
Q ss_pred cEEEeCChHHHHHHHHHHhcC-----CCCEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCCCcccCH
Q 043923 113 KIVLTAGATSANETLMFCLAE-----PGEAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLNGFQITE 175 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~-----~gd~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~d~ 175 (469)
.++++++++||++.+++.... ....|+.....|++....+....+-. +..+|. .|.
T Consensus 136 ~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~d~ 208 (442)
T TIGR03372 136 YSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------GDI 208 (442)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------CCH
Confidence 799999999999999886531 23578888888877653332221211 112221 256
Q ss_pred HHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 176 TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 176 ~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
+.+++.++.....+.++.+|++..-....|... |.+-++++.++|++||+++|+||++.+ |+.....-..+...
T Consensus 209 ~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG--~GRtG~~~a~e~~g--- 283 (442)
T TIGR03372 209 EAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTG--MGRTGKMFACEHEG--- 283 (442)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccC--CCccccchhhhhcC---
Confidence 777777754322233566666553355567654 688899999999999999999999976 43211010111111
Q ss_pred cccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh----cccccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM----SSFGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
..+.++ +++|.+| .| +.+|.+++. +.+.+.+... .+.+..++++..++.+.|+-.+- . ..
T Consensus 284 -----v~PDiv---t~gK~lg-~G~~Pigavv~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~-~----~l 348 (442)
T TIGR03372 284 -----VQPDIL---CLAKALG-GGVMPIGATIAT-EAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLE-K----NL 348 (442)
T ss_pred -----CCCCee---eehhhhc-CCcccceEEEec-HHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHh-c----cH
Confidence 122333 5899998 88 699999985 4454444211 11122466666666665543210 0 11
Q ss_pred HHHHHHHHHHHHHHHHhc----C-CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCe
Q 043923 330 KKRLKQRHRKLVSGLEKA----G-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~----g-~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~ 404 (469)
.+..++.-+++.+.|+++ + .-......|.++.+.+... .....++..++ ++||++.+... ..+.
T Consensus 349 ~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~------~~~~~i~~~l~-~~Gvl~~~~~~----~~~~ 417 (442)
T TIGR03372 349 PAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN------EIGYAFAKELF-QQNILVAGTLN----NAKS 417 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCCh------HHHHHHHHHHH-HCCcEEeecCC----CCCE
Confidence 222233334444444432 2 1111123467888887632 11234556655 57999975321 1357
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 405 FRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 405 iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
+|+.... ++++++++++++|.+++
T Consensus 418 lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 418 IRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred EEEECCcccCHHHHHHHHHHHHHhC
Confidence 9998876 49999999999998764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-14 Score=138.89 Aligned_cols=287 Identities=12% Similarity=0.075 Sum_probs=187.7
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcE--EEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKI--VLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i--~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v 163 (469)
..++.+.+.+++.+.++ .+++++ ++|+|+||++..++.+.. .++..|++..-.|.+...+++.. |+.+..+
T Consensus 64 a~~~e~~v~~~ia~llg----~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l-g~~~~~V 138 (374)
T PLN03032 64 SRQFEVGVLDWFARLWE----LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMEAVKV 138 (374)
T ss_pred HHHHHHHHHHHHHHHhC----CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHc-CCCCeEe
Confidence 46777777777766655 566766 999999999998887653 24567888888899999888877 8888889
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC-----eEEEEecccccccc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN-----IHLISDEIYSGTVF 238 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~-----~~iI~Deay~~~~~ 238 (469)
|.+. ++.+|+++|+++|++. ..++.+|+++..+|+||.+-|.++ |+++|+++| +++++|.+|+....
T Consensus 139 ~~d~--~g~id~~~L~~~i~~~---~~~~~lvv~tagtt~tG~idpi~e---I~~i~~~~g~~~~~~~lHvDaA~gg~~~ 210 (374)
T PLN03032 139 PTLP--SGEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVDDLDR---ILRILKELGYTEDRFYIHCDGALFGLMM 210 (374)
T ss_pred eeCC--CCcCcHHHHHHHHHHc---CCCCEEEEEEecCcCCccCCCHHH---HHHHHHHhCCCCCCeeEEEEccchhhhh
Confidence 8874 4579999999999752 124667788888999999988555 788888986 58999999976422
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc-------cCc-----H
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG-------LVS-----S 306 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~-------~~s-----~ 306 (469)
.-....+...+ ..+...+..|.+|.+| ....+|.++..++.+.. +.....+. ..| +
T Consensus 211 p~~~~~~~~~~----------~~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~-~~~~~~Yl~~~d~ti~gSR~g~~~ 278 (374)
T PLN03032 211 PFVSRAPEVTF----------RKPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKA-LSQNVEYLNSRDATIMGSRNGHAP 278 (374)
T ss_pred hccCCCcccCC----------CcCCcEEEECcccccC-CCcCeEEEEEEchhhHh-hccCCcccCCCCCcccCCCchHHH
Confidence 10000011111 1123445669999887 55789999987654432 21111110 011 2
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHh
Q 043923 307 QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYD 386 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~ 386 (469)
+..++....+. .+-+.+..++..+..+++.+.|++.++++...+-.+.+.+..+.. ..+.
T Consensus 279 l~~w~~l~~~G-----~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f~~~~~-------------~~~~-- 338 (374)
T PLN03032 279 LYLWYTLRRKG-----YRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVFERPMD-------------EAFI-- 338 (374)
T ss_pred HHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEEcCCCc-------------HhHh--
Confidence 22233322222 333466667777788889999998888765443335565655520 1122
Q ss_pred CCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 043923 387 VKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 387 ~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~ 426 (469)
.|..+.+- .+.+|+++.. ++++.++++++.|++
T Consensus 339 ~~w~l~~~-------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 339 KKWQLACE-------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred heeeeccc-------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 25555421 2479999876 578889998888765
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-14 Score=141.53 Aligned_cols=289 Identities=12% Similarity=0.042 Sum_probs=180.2
Q ss_pred cHHHHHHHHHHHHhHcCCCCCC-CCCcEEEeC-ChHHHHHHHHHHhcCC-CCEEEEccCCCcChHHH-H-hhhCCC-EEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTF-DTSKIVLTA-GATSANETLMFCLAEP-GEAFLLPTPYYPGFDRD-L-KWRTGV-EIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~-~~~~i~~t~-G~~~al~~~~~~l~~~-gd~Vl~~~P~y~~~~~~-~-~~~~g~-~~~ 161 (469)
+.+.|+.++++++ + ++++|+++. |+|++++.++..++++ ++.|+. +-.|+.-... + +.. |+ ++.
T Consensus 50 ~~~~r~~l~~l~~--------~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~-g~~~v~ 119 (378)
T PRK03080 50 LKRVIEGTRELLS--------LPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDVVKQL-KLEDPR 119 (378)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhc-CCCCce
Confidence 4566667777765 3 345788775 8999999999999875 444444 4445443222 2 344 88 888
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.++.+. +..+|+++++ .++.|.+++-+|.||..++.++ |++ +++|+++|+|.+.+ ++..
T Consensus 120 ~~~~~~--g~~~d~~~i~-----------~~~~V~~~h~~t~tG~~~pi~~---I~~--~~~g~~~vVDa~qs---~G~~ 178 (378)
T PRK03080 120 VLEADY--GSLPDLSAVD-----------FDRDVVFTWNGTTTGVRVPVAR---WIG--ADREGLTICDATSA---AFAL 178 (378)
T ss_pred EeccCC--CCCCCHhhcC-----------CCCCEEEEecCCccceeccchh---hcc--ccCCCeEEEecccc---cccC
Confidence 887652 3346665532 2456888888999999999666 555 67899999999987 4443
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH----------------------hc
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK----------------------MS 299 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~----------------------~~ 299 (469)
+ ..+. +..+++.|..|+++ +...+|+++.+++.+...... ..
T Consensus 179 p-idv~--------------~iD~~~~s~~K~l~-~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (378)
T PRK03080 179 P-LDWS--------------KLDVYTFSWQKVLG-GEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFK 242 (378)
T ss_pred C-CCHH--------------HCcEEEEehhhhCC-CCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhc
Confidence 3 2222 23477889999986 334588888865544331110 00
Q ss_pred --ccccCcHHHHHHHHHHhcCchhhHH--HHHHHHHHHHHHHHHHHHHHHhcC-CceecC----CceEEEEEeccccccc
Q 043923 300 --SFGLVSSQTQYLLSALLSDKKFTQN--YISENKKRLKQRHRKLVSGLEKAG-ISCLKS----NAGLFCWVDMRHLLRS 370 (469)
Q Consensus 300 --~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~----~~g~~~~v~~~~~~~~ 370 (469)
.+++.+.....++.++|+. +.+ -++...++.++..+++.+.|++++ +++..+ .++..+.+.+++. .
T Consensus 243 ~~t~~tp~i~~i~~l~~al~~---l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~-~- 317 (378)
T PRK03080 243 GQTINTPSMLTVEDYLDQLDW---ANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDA-Q- 317 (378)
T ss_pred CCcccCchHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCc-h-
Confidence 1111222333232333321 121 146667778888888999998885 454421 2333555666640 0
Q ss_pred CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 371 ~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
. ..+.++...++++ ||.+..|... . ..+.+|+|+.. .+++++++++++|++++++.+.
T Consensus 318 -~-~~~~~~~~~l~~~-~i~v~~g~~~-~-~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 318 -A-AVDAAAVAKLLRE-NGAVDIEPYR-D-APNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred -H-HHHHHHHHHHHHc-CCeecccccc-C-CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 0 0112355666654 8888876532 1 34689999976 4999999999999999887654
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-13 Score=139.19 Aligned_cols=309 Identities=14% Similarity=0.092 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC---------
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV--------- 158 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~--------- 158 (469)
+....+|+.+.+.... -..+.+++++++++|+..+++... ...++|+...-+|++....+....+.
T Consensus 97 ~~~~~lAe~L~~~~p~---~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~ 173 (441)
T PRK05769 97 EPAVELAERLVEIAPG---GFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFF 173 (441)
T ss_pred HHHHHHHHHHHHhCCC---CCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCC
Confidence 4456667766543210 013689999999999999987642 23467888888887765332211111
Q ss_pred ----EEEEeeccCC--CCcc-cC--------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHh
Q 043923 159 ----EIVPIQCTSL--NGFQ-IT--------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITE 222 (469)
Q Consensus 159 ----~~~~v~~~~~--~~~~-~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~ 222 (469)
.+..+|.+.. ..|+ -+ ++.+++.+-+......++.+|++..-....|.. .+.+.+++|.++|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~ 253 (441)
T PRK05769 174 PLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADK 253 (441)
T ss_pred CCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH
Confidence 1222332110 0011 01 122333221100012356665554334556764 568889999999999
Q ss_pred cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cc
Q 043923 223 KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SS 300 (469)
Q Consensus 223 ~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~ 300 (469)
||+++|.||++.++...+.. .....+ . ..+.++ ++||.+| .|+++|+++++++ +....... .+
T Consensus 254 ~g~lli~DEv~tG~gr~G~~-~a~~~~-g--------v~pDiv---t~~K~l~-~G~p~gav~~~~~-i~~~~~~~~~~T 318 (441)
T PRK05769 254 YGILLIDDEVQTGMGRTGKM-FAIEHF-G--------VEPDII---TLAKAIA-GGLPLGAVIGRAE-LMFLPPGSHANT 318 (441)
T ss_pred cCCEEEEechhhCCCcccce-ehhhcc-C--------CCCCEE---EEccccc-CCcccEEEEEehh-hhhcCCCCCCCC
Confidence 99999999999874322321 111111 1 112333 5899998 8999999998554 33322211 12
Q ss_pred cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHH
Q 043923 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 301 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~ 376 (469)
+ ..+++++.++.+.|+.. ++ ...+.+++.-++|.+.|+++ ++......-|.++.+.+............
T Consensus 319 ~-~g~p~~~aaa~a~L~~l---~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~ 391 (441)
T PRK05769 319 F-GGNPVAAAAALATLEEL---EE---GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLR 391 (441)
T ss_pred C-CcCHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHH
Confidence 2 24667777766666432 11 33444555555666666543 32212222356777776432111111122
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
..+...++ ++||.+.+. +...+|++... ++++++++++++|.+++++
T Consensus 392 ~~~~~~~~-~~Gil~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 392 DKVLYEAF-KRGLLLLGA------GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred HHHHHHHH-hCCcEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33444544 679998753 23579999876 4999999999999999864
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-13 Score=137.00 Aligned_cols=352 Identities=11% Similarity=0.063 Sum_probs=188.3
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccc-cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRE-LALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
....+||+..+ ...+. .+.+.+++++..+. ... ...|.. .+....+|+.+.+... ..
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~----------~~~~~~~~~~----~~~~~~lae~L~~~~p----~~ 112 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVAL----------IQHSMIGYTH----SERAIRVAEKLAEISP----IE 112 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHh----------ccccccCccC----CHHHHHHHHHHHhhCC----CC
Confidence 34568888766 33443 46666666653111 000 011211 2333445555543321 22
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCCC--Ccc-
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSLN--GFQ- 172 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~--~~~- 172 (469)
.+.+++++++++|++.+++... .....|+.....|++....+....+. .++.+|.+... .|.
T Consensus 113 ~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (457)
T PRK05639 113 NPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGI 192 (457)
T ss_pred cCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccc
Confidence 3689999999999999988753 23457888888887754332211111 12333332100 000
Q ss_pred ---cCHHH--------HHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 173 ---ITETA--------IEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 173 ---~d~~~--------l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
-+.+. +++.+........++.+|++.--....|. ..+.+-+++|.++|++||+++|.||++.++.-.+
T Consensus 193 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG 272 (457)
T PRK05639 193 NGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG 272 (457)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc
Confidence 02222 22222110011236777666533555676 4578899999999999999999999998732122
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHHHHHHhcC
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYLLSALLSD 318 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~ 318 (469)
..+ . .+... ..+.++ +++|.+| .|+.+|+++++++ +.+.... ..++ ..++++..++.+.|+.
T Consensus 273 ~~~-a-~~~~g--------v~PDiv---~~gK~l~-gG~pi~av~~~~~-i~~~~~~~~~~T~-~g~p~~~aaa~a~l~~ 336 (457)
T PRK05639 273 KWF-A-SEWFE--------VKPDLI---IFGKGVA-SGMGLSGVIGRKE-LMDLTSGSALLTP-AANPVISAAAEATLEI 336 (457)
T ss_pred hHH-H-HHhcC--------CCCCEE---Eechhhc-CCCcceeEEehHH-HHhhcCCCcccCC-CcCHHHHHHHHHHHHH
Confidence 111 1 11111 223333 3899998 8999999999544 4442211 1122 2455555555555543
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCC
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPG 394 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg 394 (469)
..- . ...+...+.-++|.+.|++ +++......-|.++.+.+..............++..++ ++||.+.+.
T Consensus 337 l~~-~----~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~ 410 (457)
T PRK05639 337 IEE-E----NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAF-ELGLILPSY 410 (457)
T ss_pred HHH-c----cHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHH-hCCeEEeec
Confidence 211 1 1122222333444444443 34322223345777777642211111122234455555 679999764
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 395 SSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 395 ~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.. ..+.+|+.... ++++++++++++|.+++++.
T Consensus 411 g~----~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 411 GM----FGNVIRITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred CC----CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 21 24689999987 49999999999999999765
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-14 Score=143.67 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=177.0
Q ss_pred cHHHHHHHHHHHHhHcCCCCCC-CCCcEEEeCC-hHHHHHHHHHHhcC---CCCEEEEccCCCcChHHHHhhhCCCEEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTF-DTSKIVLTAG-ATSANETLMFCLAE---PGEAFLLPTPYYPGFDRDLKWRTGVEIVP 162 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~-~~~~i~~t~G-~~~al~~~~~~l~~---~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~ 162 (469)
+.+.|+.++++++ . ++++|++|+| +|++++.++..+.. +||.|+. .|........++.. |+++..
T Consensus 46 ~~~~r~~l~~l~~--------~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~-g~~~~~ 115 (355)
T cd00611 46 VNEAESDLRELLN--------IPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-GAWSAKAAKEAKRY-GGVVVI 115 (355)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-CHHHHHHHHHHHhc-CCCcEE
Confidence 5677888888875 3 4678999988 99999999999987 5555543 22221122255666 998888
Q ss_pred eeccCCCCcccC-HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 163 IQCTSLNGFQIT-ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 163 v~~~~~~~~~~d-~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
++.+..+++. + ++..+..++ +++++|.+++-.|.||..++ ++++.||+++++|.+.+ ++..
T Consensus 116 ~~~~~~g~~~-~~~~~~~~~~~------~~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs---~g~~ 177 (355)
T cd00611 116 VAAKEEGKYT-KIPDVETWDLA------PDAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSN---ILSR 177 (355)
T ss_pred EecccccCCC-CCCCHhhcCCC------CCCCEEEEeCCcccccEEcc--------eecccCCCeEEEEcccc---ccCC
Confidence 8876433331 2 222222222 38899999999999999743 23445999999999997 4443
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH-------------HhcccccCcHHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT-------------KMSSFGLVSSQT 308 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~-------------~~~~~~~~s~~~ 308 (469)
+ ..+.++ + +.+.|..|.+|.+| +|.++++++.+.+... ....+++++...
T Consensus 178 ~-idv~~~------------~--~~~ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~ 240 (355)
T cd00611 178 P-IDVSKF------------G--VIYAGAQKNLGPAG--VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFA 240 (355)
T ss_pred C-CCHHHh------------C--EEEeecccccCCCc--eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHH
Confidence 3 333222 2 35566899998665 7888886554432110 011134455555
Q ss_pred HHHHHHHhcCchhhHH--HHHHHHHHHHHHHHHHHHHHHhc-CCc-ee-c--CCceEEEEEecccccccCChhHHHHHHH
Q 043923 309 QYLLSALLSDKKFTQN--YISENKKRLKQRHRKLVSGLEKA-GIS-CL-K--SNAGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~-~--~~~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
..++.++|+- +.+ -++...++.++..+++.+.|+++ |+. .. . ...+..+.+.+++. ....++..
T Consensus 241 i~~L~aal~~---l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~~~~ 311 (355)
T cd00611 241 IYMMGLVLKW---LKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKEFLK 311 (355)
T ss_pred HHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh------hhhHHHHH
Confidence 5555555432 122 25777888888999999999998 752 21 1 12334455666542 11112223
Q ss_pred HHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 382 KIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
.+.+.|+.+.++.. ..+.+|+|+.. .+++|+++++++|+++.
T Consensus 312 -~~~r~G~~~~~~~~----~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 312 -EAEAAGMIGLKGHR----SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred -HHHHCCCcccCCCc----ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 34467998666543 23689999976 49999999999998853
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-14 Score=141.79 Aligned_cols=285 Identities=19% Similarity=0.276 Sum_probs=177.5
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
-..+++++++++++ ..+++.+++++.||.+++.++ +++||+|+++.-+|......+... |++++.+++
T Consensus 26 ~~~~fE~~~a~~~g----------~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~-G~~pv~~Di 94 (363)
T PF01041_consen 26 YVEEFEKEFAEYFG----------VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWA-GAEPVFVDI 94 (363)
T ss_dssp HHHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHT-T-EEEEE-B
T ss_pred HHHHHHHHHHHHhC----------CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHh-ccEEEEEec
Confidence 35888999999985 678899999999999999998 478999999999999999888887 999999999
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCcc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFV 244 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~ 244 (469)
++ ..+.+|++.+++.+++ ++++|++.+. -|... ++.+|.++|+++|++||+|.+++... +.+.
T Consensus 95 ~~-~~~~id~~~~~~~i~~------~t~ai~~~h~---~G~~~---d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~--- 158 (363)
T PF01041_consen 95 DP-ETLNIDPEALEKAITP------KTKAILVVHL---FGNPA---DMDAIRAIARKHGIPLIEDAAQAFGARYKGR--- 158 (363)
T ss_dssp ET-TTSSB-HHHHHHHHHT------TEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTE---
T ss_pred cC-CcCCcCHHHHHHHhcc------CccEEEEecC---CCCcc---cHHHHHHHHHHcCCcEEEccccccCceeCCE---
Confidence 85 5789999999999987 8899987744 45544 46778999999999999999998321 1111
Q ss_pred chhhhhhccccccCCcCCeEEEEccC--ccccCCCcceEEEEEecCHHHHHHHHHhcccc-------------------c
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSL--SKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG-------------------L 303 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~-------------------~ 303 (469)
..- ..+ .+.+.|| +|.+. .| .-|+++++++.+.+.++.++..+ .
T Consensus 159 ~~G------------~~g-d~~~fSf~~~K~i~-~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~r 223 (363)
T PF01041_consen 159 PVG------------SFG-DIAIFSFHPTKIIT-TG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFR 223 (363)
T ss_dssp ETT------------SSS-SEEEEESSTTSSS--SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B
T ss_pred ecc------------CCC-CceEecCCCCCCCc-CC-CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccc
Confidence 111 112 3445566 69885 33 34999998888877776554322 1
Q ss_pred CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec--CCc---eE-EEEEecccccccCChhHH
Q 043923 304 VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK--SNA---GL-FCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~--~~~---g~-~~~v~~~~~~~~~~~~~~ 376 (469)
++.+....+..-|.. +++..+.-+++.+.+.+.|... ++...+ +.. .+ .+.+.+++... ...
T Consensus 224 m~~~~AAigl~QL~~-------L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~~r 292 (363)
T PF01041_consen 224 MSELQAAIGLAQLKR-------LDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----ADR 292 (363)
T ss_dssp -BHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----STH
T ss_pred cHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc----chH
Confidence 233333333333333 3333344445556677778776 343322 221 11 12233332110 123
Q ss_pred HHHHHHHHHhCCeEEeCCCC--CC------CC----C----------CCeEEEEeec-CCHHHHHHHHHHHH
Q 043923 377 MELWKKIVYDVKLNISPGSS--CH------CT----E----------PGWFRVCFAN-MSEDTLKLSMQRLK 425 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~--f~------~~----~----------~~~iRi~~~~-~~~e~i~~~l~~L~ 425 (469)
.++.+.|. +.||...+... .. .. . ...+-+-+.. +++++++..++.|+
T Consensus 293 d~l~~~L~-~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 293 DELVEALR-ARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHHHH-HTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 35666654 56999987541 10 00 0 1135555544 58899888888764
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.8e-14 Score=135.06 Aligned_cols=217 Identities=16% Similarity=0.162 Sum_probs=147.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhh---hC
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKW---RT 156 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~---~~ 156 (469)
.+++.+ ....|...+++..+ ..+.++.+++..|+..++..|+.+|+.|+.....|.+....+.. ..
T Consensus 72 sr~~nP-t~~~le~~iaal~g----------a~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~ 140 (409)
T KOG0053|consen 72 SRSGNP-TRDVLESGIAALEG----------AAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKF 140 (409)
T ss_pred ccCCCC-chHHHHHHHHHHhC----------CceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHh
Confidence 344433 34778888887764 55688889999999999999999999999999999998766543 23
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|++...+..+ +++.+++++++ ++++|++.+|.||+..+.+.++ +.++|+++|+++|+|+.++..
T Consensus 141 gie~~~vd~~-------~~~~~~~~i~~------~t~~V~~ESPsNPll~v~DI~~---l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 141 GGEGDFVDVD-------DLKKILKAIKE------NTKAVFLESPSNPLLKVPDIEK---LARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred Cceeeeechh-------hHHHHHHhhcc------CceEEEEECCCCCccccccHHH---HHHHHhhCCCEEEEeCCcCcc
Confidence 7777777654 56778888775 7999999999999999988555 777777999999999998764
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhc-cc-ccCcHHHHHHHH
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMS-SF-GLVSSQTQYLLS 313 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~-~~-~~~s~~~q~~~~ 313 (469)
++ .....+ +-.|++.|.+|.+| -..+=.|.++.+...+.+.+...+ .. +..++...+.+.
T Consensus 205 ~~-----~~pL~l------------GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~ 267 (409)
T KOG0053|consen 205 YN-----QDPLPL------------GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLS 267 (409)
T ss_pred cc-----cChhhc------------CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHh
Confidence 22 222222 56789999999995 344556777775455544444333 22 334554444333
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+-+.. +.-+.++..++.-.+.+.|+..
T Consensus 268 Rglkt-------l~lRi~~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 268 RGLKT-------LHLRINKHSENALKIALLLEAH 294 (409)
T ss_pred cCcch-------hhhhHHHHHHHHHHHHHHhhhC
Confidence 33322 2223333344444455566554
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-13 Score=136.91 Aligned_cols=313 Identities=12% Similarity=0.093 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHhHcCCCCCCC-C-CcEEE--eCChHHHHHHHHHHhc--------CCC-----CEEEEccCCCcChHHH
Q 043923 89 PAFKKALVEFMSEIRGNKVTFD-T-SKIVL--TAGATSANETLMFCLA--------EPG-----EAFLLPTPYYPGFDRD 151 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~-~-~~i~~--t~G~~~al~~~~~~l~--------~~g-----d~Vl~~~P~y~~~~~~ 151 (469)
.++.+.+.+++.+.++ ++ + +++.. |+|+||++..++.+.. ..| ..|++..-.|.++...
T Consensus 79 ~~le~~~~~~la~llg----~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka 154 (431)
T TIGR01788 79 AEIENRCVNMLADLWH----APAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKF 154 (431)
T ss_pred HHHHHHHHHHHHHHhC----CCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHH
Confidence 4677777777766655 44 2 34544 8999999998886542 111 3688888889999988
Q ss_pred HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc------Ce
Q 043923 152 LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK------NI 225 (469)
Q Consensus 152 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~------~~ 225 (469)
++.. |+++..+|.++ +++.+|+++|+++|++ ++.+|+++..+|.||.+-|.++ |+++|+++ |+
T Consensus 155 ~~~l-g~~v~~i~~d~-~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~idpi~~---I~~i~~~~~~~~~~~~ 223 (431)
T TIGR01788 155 ARYF-DVELREVPMDP-GRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGEYEDVKA---LNDALDEYNAKTGWDI 223 (431)
T ss_pred HHHc-CceeEEEecCC-CceeeCHHHHHHHHhh------CCeEEEEEeCCCCCcccCCHHH---HHHHHHHHHhhhCCCc
Confidence 8877 99999999875 4567999999999976 7888999999999999999655 78888899 99
Q ss_pred EEEEecccccccc--CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-HHHHHHHhccc-
Q 043923 226 HLISDEIYSGTVF--SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-VVAAATKMSSF- 301 (469)
Q Consensus 226 ~iI~Deay~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-~~~~~~~~~~~- 301 (469)
++++|.+|+.+.. ...... ..+ . ......+..|.+|.+ +....+|+++..+.. +...+.....+
T Consensus 224 ~~HvDaaq~g~~~p~~~~~~~--~~~-~--------~~~~DSis~s~HK~~-~~P~g~G~l~~r~~~~l~~~~~~~~~yl 291 (431)
T TIGR01788 224 PIHVDAASGGFIAPFVYPDLE--WDF-R--------LPRVKSINVSGHKYG-LVYPGVGWVIWRDEEALPEELIFHVNYL 291 (431)
T ss_pred eEEEecccHHHHHHHhCCCch--hhc-C--------CCCceEEEECchhcc-CCCCCcEEEEEeChHHcchhheeccccc
Confidence 9999999986431 111111 011 0 123345566999976 244558998886543 22222110000
Q ss_pred -------c-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC-CceEEEEEecccccccC
Q 043923 302 -------G-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS-NAGLFCWVDMRHLLRSN 371 (469)
Q Consensus 302 -------~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~-~~g~~~~v~~~~~~~~~ 371 (469)
. ..+...-.++..++.-..+...-+++..++..+..+++.+.|++. ++++..+ .....+.+.++....
T Consensus 292 ~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~-- 369 (431)
T TIGR01788 292 GGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDAD-- 369 (431)
T ss_pred CCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCC--
Confidence 0 011111112222222111112334666677777888899999888 4777654 333556666653111
Q ss_pred ChhHHHHHHHHHHHhCCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 372 TFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 372 ~~~~~~~l~~~ll~~~GI~v~pg~~f~-~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
...+..++.+.| .+.|+.+..-.... ..+..++|+++.. ++++.++++++.|++++.++
T Consensus 370 ~~~~~~~l~~~L-~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 370 PGYTLYDLSHRL-RERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCcCHHHHHHHH-HHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 001223455554 56798754222111 1233479999953 58899999999999988764
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-13 Score=135.75 Aligned_cols=314 Identities=14% Similarity=0.102 Sum_probs=170.0
Q ss_pred HHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CEEEEccCCCcChHHHHhhhCCC-----
Q 043923 92 KKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-------PG-EAFLLPTPYYPGFDRDLKWRTGV----- 158 (469)
Q Consensus 92 r~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------~g-d~Vl~~~P~y~~~~~~~~~~~g~----- 158 (469)
...+|+.+.+..+ ..+.+++++++++|+..+++.... +| ..|+...-.|++....+....|.
T Consensus 91 ~~~lae~l~~~~~-----~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~ 165 (451)
T PRK07678 91 AIKLAEKLNEWLG-----GEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKY 165 (451)
T ss_pred HHHHHHHHHHhCC-----CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccccc
Confidence 3445555544322 235799999999999999887531 23 57888888887764333211121
Q ss_pred -------EEEEeeccCCCCccc---------C---HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHH
Q 043923 159 -------EIVPIQCTSLNGFQI---------T---ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVN 218 (469)
Q Consensus 159 -------~~~~v~~~~~~~~~~---------d---~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~ 218 (469)
.+..+|.+ +.+.. + ++.+++.++. ....++.+|++.-...-.|.+ .+.+-++++.+
T Consensus 166 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~ 241 (451)
T PRK07678 166 KYEPLAPGFLHVPPP--DCYRMPGIESEDIYDLECVKEIDRVMTW--ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKE 241 (451)
T ss_pred ccCCCCCCCEEeCCC--ccccccccCChHHHHHHHHHHHHHHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHH
Confidence 11222221 11111 1 1223444431 112367766665334445654 57888999999
Q ss_pred HHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH
Q 043923 219 IITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 219 ~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~ 297 (469)
+|++||+++|.||++.++.-.+.. ... +... ..+.++ +++|.+| .| +.+|.+++.++ +.+.+..
T Consensus 242 lc~~~g~llI~DEV~tGfGRtG~~-~~~-~~~g--------v~PDiv---t~gK~lg-gG~~Pi~av~~~~~-i~~~~~~ 306 (451)
T PRK07678 242 ICQKHGALLISDEVICGFGRTGKA-FGF-MNYG--------VKPDII---TMAKGIT-SAYLPLSATAVKKE-IYEAFKG 306 (451)
T ss_pred HHHHcCCEEEEeehhhcCCcCchh-HHH-HhcC--------CCCCEE---Eeecccc-cCCcceeEEEEcHH-HHHHHhc
Confidence 999999999999999874222221 111 1111 223333 6799998 77 79999999544 4444432
Q ss_pred --------hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccc
Q 043923 298 --------MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLR 369 (469)
Q Consensus 298 --------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~ 369 (469)
....+..++++..++.+.|+...- .+..++.++.-...++.|.+.+.++++......-|.++.+.+.....
T Consensus 307 ~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~ 385 (451)
T PRK07678 307 KGEYEHFRHVNTFGGNPAACALALKNLEIMEN-ENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKE 385 (451)
T ss_pred cCcccccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCc
Confidence 111122566666666666543211 11112222111222223333344444322222335666677642111
Q ss_pred cC---ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 370 SN---TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 370 ~~---~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.. .......++..++ ++||.+.+.....+...+.+|++... ++++++++++++|.+++++.
T Consensus 386 ~~~~~~~~~a~~i~~~l~-~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 386 TKEPADNDKVASVVAACK-EKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred ccCcCchHHHHHHHHHHH-HCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 00 1112234455554 67999976321111223679999876 49999999999999999764
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=135.79 Aligned_cols=268 Identities=16% Similarity=0.142 Sum_probs=171.9
Q ss_pred cEE-EeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEEeeccCCCCcccCHHHHHH-HHHHHHhc
Q 043923 113 KIV-LTAGATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVPIQCTSLNGFQITETAIEE-AYQLAQKR 188 (469)
Q Consensus 113 ~i~-~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-~i~~~~~~ 188 (469)
.|+ ++++++.+++.++..++.+||++++..-...+. ...++.. |.. ..+..+...++ .+..++++ .+++
T Consensus 68 ~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~-g~~-~~~~~~~~~g~-~~~~~~~~~~l~~---- 140 (360)
T PRK05355 68 KVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKY-GEV-NVAASSEDDGF-TYIPPLDEWQLSD---- 140 (360)
T ss_pred EEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CCc-eEEecccccCC-CCCCChhhccCCC----
Confidence 455 557789999999999999998888776654332 3445555 765 55544421222 23333333 4433
Q ss_pred CCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEc
Q 043923 189 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY 268 (469)
Q Consensus 189 ~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~ 268 (469)
++++|.+++-.+.||...+ ++.++ +|+++|+|.+.+ ++..+ ..+..+ + +++.
T Consensus 141 --~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss---~g~~~-idv~~~------------d--~~~~ 192 (360)
T PRK05355 141 --DAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSD---ILSRP-IDVSKF------------G--LIYA 192 (360)
T ss_pred --CCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcCcc---ccCcc-CCHHHc------------c--EEEE
Confidence 6889999999999999984 23334 799999999997 44443 332221 3 7788
Q ss_pred cCccccCCCcceEEEEEecCHHHHHHHH-------------HhcccccCcHHHHHHHHHHhcCchhhHH-HHHHHHHHHH
Q 043923 269 SLSKDLGLPGFRVGAIYSNDDMVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFTQN-YISENKKRLK 334 (469)
Q Consensus 269 S~SK~~g~~GlRiG~li~~~~~~~~~~~-------------~~~~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~ 334 (469)
|..|.+|.+| +|.++++++.+.+... ....+++++....+++.++|+... .. -++...++.+
T Consensus 193 ssqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~--~~gG~e~i~~r~~ 268 (360)
T PRK05355 193 GAQKNIGPAG--LTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLK--EQGGVAAMEKRNQ 268 (360)
T ss_pred eccccccCCc--eEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHH--HccCHHHHHHHHH
Confidence 9999998555 7888876554432111 011234456666666655554321 11 2677788888
Q ss_pred HHHHHHHHHHHhcCCc-e-ec--CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee
Q 043923 335 QRHRKLVSGLEKAGIS-C-LK--SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 410 (469)
Q Consensus 335 ~~~~~l~~~L~~~g~~-v-~~--~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~ 410 (469)
+..+++++.|+++++. . .. ...+..+.+.+++. ....++...+ .++|+.+.+|.. ..+.+|+|+.
T Consensus 269 ~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~-~~~Gi~~~~~~~----~~g~vRiS~~ 337 (360)
T PRK05355 269 EKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE------ELDKKFLAEA-KAAGLVGLKGHR----SVGGMRASIY 337 (360)
T ss_pred HHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh------HHHHHHHHHH-HHCCCcccCCCC----ccCcEEEECC
Confidence 8999999999998752 2 11 12334566666653 1112333444 467999866653 2468999997
Q ss_pred c-CCHHHHHHHHHHHHHHHHh
Q 043923 411 N-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 411 ~-~~~e~i~~~l~~L~~~l~~ 430 (469)
. .+.+|++++++.|+++++.
T Consensus 338 ~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 338 NAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 6 4899999999999998765
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=133.25 Aligned_cols=333 Identities=14% Similarity=0.150 Sum_probs=184.3
Q ss_pred CCCeeeeeccc--cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+- +.+. .+.+.+++++.. .....|..+ .++...+|+.+.+... ..+
T Consensus 98 G~~yiD~~~g~g~~~lGh~~p~v~~av~~ql-------------~~~~~~~~~---~~~~~~lAe~l~~~~p-----~~~ 156 (474)
T PLN02482 98 GNEYIDYVGSWGPAIIGHADDEVLAALAETM-------------KKGTSFGAP---CLLENVLAEMVIDAVP-----SVE 156 (474)
T ss_pred CCEEEEecccccccccCCCCHHHHHHHHHHH-------------hhCCCCCCC---CHHHHHHHHHHHHhCC-----CCC
Confidence 34578887653 3343 466776666532 111222211 3455666777765422 257
Q ss_pred cEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhh--C-----------CC------EEEEeeccCCCCc
Q 043923 113 KIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWR--T-----------GV------EIVPIQCTSLNGF 171 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~--~-----------g~------~~~~v~~~~~~~~ 171 (469)
.+.++++++||...+++... ...++|+...-+|++....+... . |. .++.+|.
T Consensus 157 ~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------ 230 (474)
T PLN02482 157 MVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY------ 230 (474)
T ss_pred EEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC------
Confidence 99999999999999988753 23467888888888754321100 0 11 1111221
Q ss_pred ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhh
Q 043923 172 QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250 (469)
Q Consensus 172 ~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~ 250 (469)
-|++.+++.++.. ..++.+||+.......|.+. +.+.+++|.++|++||+++|+||++.++ ..+.. ...+..
T Consensus 231 -nd~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~--ga~~~~ 303 (474)
T PLN02482 231 -NDLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYG--GAQEYF 303 (474)
T ss_pred -CChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcc--hHhHHh
Confidence 1678888877641 22566555543355567665 4788999999999999999999999874 22221 111221
Q ss_pred hccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-----ccccCcHHHHHHHHHHhcCchhhHHH
Q 043923 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----SFGLVSSQTQYLLSALLSDKKFTQNY 325 (469)
Q Consensus 251 ~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~ 325 (469)
. ..+.+ .+++|.+| .|+.+|.+++ .+.+.+.+.... .....++++..++.+.|+...-
T Consensus 304 g--------v~PDi---~t~gK~lg-gG~Pigav~g-~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~---- 366 (474)
T PLN02482 304 G--------ITPDL---TTLGKVIG-GGLPVGAYGG-RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ---- 366 (474)
T ss_pred C--------CCCCE---EEecchhh-CCCceEEEEE-cHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc----
Confidence 1 11222 37899998 8999999988 455555443211 1111355555555554432110
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcCCcee-cCCceEEEEEeccc-cc------ccCChhHHHHHHHHHHHhCCeEEeC
Q 043923 326 ISENKKRLKQRHRKLVSGLE----KAGISCL-KSNAGLFCWVDMRH-LL------RSNTFEAEMELWKKIVYDVKLNISP 393 (469)
Q Consensus 326 ~~~~~~~l~~~~~~l~~~L~----~~g~~v~-~~~~g~~~~v~~~~-~~------~~~~~~~~~~l~~~ll~~~GI~v~p 393 (469)
....+++.+.-++|.+.|+ +.++++. ...+|++ .+.+.. .. ...+......++..++ ++||.+.|
T Consensus 367 -~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~-~~Gv~~~~ 443 (474)
T PLN02482 367 -PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFARFHRGML-EEGVYLAP 443 (474)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEE-EEEEecCCccChhhhccCCHHHHHHHHHHHH-HCCeEEec
Confidence 1122333333344444443 4455544 2334443 233321 10 0011112234555555 67999987
Q ss_pred CCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 394 GSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 394 g~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
... . .++ +++. +++++|+++++++.+++++
T Consensus 444 ~~~-~---~~~--psl~-ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 444 SQF-E---AGF--TSLA-HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred cCC-C---CCc--CCCC-CCHHHHHHHHHHHHHHHHh
Confidence 421 1 111 3444 5999999999999999865
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-12 Score=132.08 Aligned_cols=351 Identities=11% Similarity=0.030 Sum_probs=191.4
Q ss_pred CCCCeeeeecc--cccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCC-CCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDY-HGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
....+||+..+ .+.+ ..+.+.+++++.. .....+... ....+.+..+|+.+.+... -.
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~-------------~~~~~~~~~~~~~~~~~~~lAe~L~~~~p----~~ 110 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQA-------------KELAYYHTYVGHGTEASITLSKRIIDRAP----AG 110 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHH-------------HhcCccccccccCCHHHHHHHHHHHHhCC----CC
Confidence 34568888766 3333 3466666666531 111111110 1113555666666654321 13
Q ss_pred CCcEEEeCChHHHHHHHHHHhc------C-C-CCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLA------E-P-GEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNG 170 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~------~-~-gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~ 170 (469)
.+.+++++++++|++.+++... . + ..+|+.....|++....+....|. .+..++.+....
T Consensus 111 ~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 190 (461)
T PRK07482 111 MSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYR 190 (461)
T ss_pred cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCcccc
Confidence 4689999999999999998763 1 2 357888888888754322111111 111122110000
Q ss_pred ---cc--------cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 171 ---FQ--------ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 171 ---~~--------~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+. .+++.+++.+... ...++.+|++.-...-.|.. .+.+-+++|.++|++||+++|.||+..++.-
T Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGR 268 (461)
T PRK07482 191 RADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGR 268 (461)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Confidence 00 0245556555321 12356666555334455665 5788999999999999999999999988422
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHHH---------hcccccCcHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATK---------MSSFGLVSSQT 308 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~---------~~~~~~~s~~~ 308 (469)
.+..+. .+... ..+.++ +++|.+| .|. .+|.+++.+ .+.+.+.. .......++++
T Consensus 269 tG~~~a--~~~~g--------v~PDiv---~~gKgl~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~h~~T~~gnpl~ 333 (461)
T PRK07482 269 LGSMFG--SDHYG--------IEPDLI---TVAKGLT-SAYAPLSGSIVGE-KVWDVLEQGSDEHGAIGHGWTYSGHPIC 333 (461)
T ss_pred Ccchhh--HHhcC--------CCCCEE---EEccccc-cCccccceeeecH-HHHHHHhcccccCCccccCCCCCcCHHH
Confidence 232211 11111 223444 4789998 885 899999854 44444331 01111256677
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHH----HhcCCceecCCceEEEEEecccccccCC-h----hHHHHH
Q 043923 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGL----EKAGISCLKSNAGLFCWVDMRHLLRSNT-F----EAEMEL 379 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L----~~~g~~v~~~~~g~~~~v~~~~~~~~~~-~----~~~~~l 379 (469)
..++.+.|+..+- . ...+..++.-++|.+.| +++++......-|.++.+.+........ . .....+
T Consensus 334 ~Aaa~a~L~~~~~-~----~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i 408 (461)
T PRK07482 334 AAAALANLDILER-E----NLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQV 408 (461)
T ss_pred HHHHHHHHHHHHh-C----CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHH
Confidence 6666666543211 1 11222223333344444 3344322223345777787753211100 0 012244
Q ss_pred HHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 380 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+..++ ++||.+.++. ..+.+|+..+. ++++++++++++|.+++++.
T Consensus 409 ~~~~~-~~Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 409 SAAAL-ERGVIARAMP-----HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred HHHHH-HCCcEEecCC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55555 6799987532 13468998665 59999999999999999865
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=142.00 Aligned_cols=187 Identities=19% Similarity=0.264 Sum_probs=133.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCCC
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTGV 158 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g~ 158 (469)
.|+......+|++.+++.++ .+..+++.++|.|..++++++++|++.|++..+.|.... .......|+
T Consensus 24 ~Yg~D~~~~~l~~~i~~l~g----------~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~ 93 (290)
T PF01212_consen 24 AYGEDPTTARLEERIAELFG----------KEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGA 93 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTC
T ss_pred ccCCChhHHHHHHHHHHHcC----------CCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCc
Confidence 58877778888888888885 456678999999999999999999999999998764222 222223499
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
++++++.+.. ..+|++++++.++......+++++|++++|+|.. |.++|.+++++|.++|++||+.++.|.+..
T Consensus 94 ~~~~l~~~~~--G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl--- 168 (290)
T PF01212_consen 94 KLIPLPSDDD--GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARL--- 168 (290)
T ss_dssp EEEEEBECTG--TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTH---
T ss_pred EEEECCCccc--CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhH---
Confidence 9999997632 4689999999998754334579999999999863 899999999999999999999999999974
Q ss_pred cCCC--CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-HHHHH
Q 043923 238 FSSP--GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-VVAAA 295 (469)
Q Consensus 238 ~~~~--~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-~~~~~ 295 (469)
+... ...++.++.. .-.++.-|++|.+|+++ |.+++-++. +.+..
T Consensus 169 ~~a~~~~~~~~~e~~~----------~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~ 216 (290)
T PF01212_consen 169 ANAAAALGVSLAEIAA----------GADSVSFGGTKNGGAPG---GAVLAGNKEFIAKAR 216 (290)
T ss_dssp HHHHCHHHHHHHHHHT----------TSSEEEEETTSTT-SSS---EEEEEESHHHHHHHH
T ss_pred HHhhhcccccHHHHhh----------hCCEEEEEEEccccccc---ceEEEechHHHHHHH
Confidence 2211 1123444432 33455569999998776 665544444 44443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-13 Score=126.76 Aligned_cols=296 Identities=17% Similarity=0.225 Sum_probs=192.1
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH----HHHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD----RDLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~~g~~~~~ 162 (469)
....|++.||..-+- -.-+.+++++.|+..++..+.++||.|+...--|.+.. ..++.. |+++..
T Consensus 63 T~~vlE~RiAaLEGG----------~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~-Gi~v~f 131 (426)
T COG2873 63 TTDVLEERIAALEGG----------VAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL-GIEVRF 131 (426)
T ss_pred hHHHHHHHHHHhhcc----------hhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhc-CcEEEE
Confidence 358899999988751 12366788899999999999999999999888787754 345556 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
+.-+ |++.++++|++ ++|+|++..-.||.+.+.+ +++++++|+++|+.+|+|..+...++-.
T Consensus 132 vd~~-------d~~~~~~aI~~------nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl~r-- 193 (426)
T COG2873 132 VDPD-------DPENFEAAIDE------NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYLCR-- 193 (426)
T ss_pred eCCC-------CHHHHHHHhCc------ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcceecc--
Confidence 8743 68999999987 9999999999999999988 5569999999999999999987532211
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH----HHHHhcc----cc--------cCcH
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA----AATKMSS----FG--------LVSS 306 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~----~~~~~~~----~~--------~~s~ 306 (469)
. + ..+-.|+++|+||..|-.|--+|-++.+.....- .+..+.. +. ....
T Consensus 194 ---P--~----------~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~a 258 (426)
T COG2873 194 ---P--I----------EHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAA 258 (426)
T ss_pred ---h--h----------hcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHH
Confidence 1 1 3366789999999998899889888764321110 0000000 00 0001
Q ss_pred HHHHHHHHHhcCch--------h----hHHHHHHHHHHHHHHHHHHHHHHHhc-CCc------------------eecCC
Q 043923 307 QTQYLLSALLSDKK--------F----TQNYISENKKRLKQRHRKLVSGLEKA-GIS------------------CLKSN 355 (469)
Q Consensus 307 ~~q~~~~~~l~~~~--------~----~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~------------------v~~~~ 355 (469)
....+-...|+|.. | ..+-+.-+.++..++...+.+.|+.+ .+. +.+..
T Consensus 259 f~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g 338 (426)
T COG2873 259 FIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKG 338 (426)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCC
Confidence 11111111222210 0 01224456677788888899999876 222 22233
Q ss_pred ceEEEEEecccccc-cCChhHHHHHHHHHHHhC----CeEEeCCCCCCC-----------CCCCeEEEEeecCCHHHHHH
Q 043923 356 AGLFCWVDMRHLLR-SNTFEAEMELWKKIVYDV----KLNISPGSSCHC-----------TEPGWFRVCFANMSEDTLKL 419 (469)
Q Consensus 356 ~g~~~~v~~~~~~~-~~~~~~~~~l~~~ll~~~----GI~v~pg~~f~~-----------~~~~~iRi~~~~~~~e~i~~ 419 (469)
.|-.+.+.+++... ...+.+..+++..+. .- -+.+.|.+..+. -.++.||+|++- |+++.
T Consensus 339 ~g~vltF~~kgg~ea~~~fi~~l~L~s~la-NvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI---Ed~~D 414 (426)
T COG2873 339 AGAVLTFGVKGGYEAGKKFIDALKLFSHLA-NIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI---EDIDD 414 (426)
T ss_pred CceEEEEEecChHHHHHHHHHHHHHHHhhc-cccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc---CCHHH
Confidence 34567777776532 223334445554443 22 245556654432 126789999984 66777
Q ss_pred HHHHHHHHHHh
Q 043923 420 SMQRLKAFVDS 430 (469)
Q Consensus 420 ~l~~L~~~l~~ 430 (469)
+++-|+++++.
T Consensus 415 iiaDl~qAl~~ 425 (426)
T COG2873 415 IIADLEQALEA 425 (426)
T ss_pred HHHHHHHHHhc
Confidence 88888887763
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=143.82 Aligned_cols=180 Identities=21% Similarity=0.233 Sum_probs=121.9
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
-+.+..+.+|+.|+ .....+++||+|.++.+++.+++++||.|+++..+|.+...++... |+++++++..
T Consensus 67 ~I~eAe~~aA~~fG---------Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~-ga~Pvyi~p~ 136 (417)
T PF01276_consen 67 IIKEAEELAARAFG---------ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILS-GAIPVYIPPE 136 (417)
T ss_dssp HHHHHHHHHHHHHT---------ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHH-TEEEEEEEEE
T ss_pred HHHHHHHHHHHhcC---------CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHc-CCeEEEecCC
Confidence 35677777788776 3566889999999999999999999999999999999999988888 9999988764
Q ss_pred CCCCcc----cCH-----HHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 167 SLNGFQ----ITE-----TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 167 ~~~~~~----~d~-----~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
...+. +++ +.++++|++.+.. ..++++++++|+. .|.+++ +++|+++|+++++.|++||||+...
T Consensus 137 -~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~-k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~ 210 (417)
T PF01276_consen 137 -DNEYGIIGGISPDEFNEEDIEEALKEHPDA-KAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHF 210 (417)
T ss_dssp -E-TTS-BEEB-GGGGSHHHHHHHHHHCTTC-HCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTG
T ss_pred -ccccCCccCCChhhhhHHHHHHHHHhCccc-cCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccc
Confidence 33332 455 8888888763211 0145599999986 899988 5558999999999999999997642
Q ss_pred -cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCH
Q 043923 238 -FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD 289 (469)
Q Consensus 238 -~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~ 289 (469)
|. +-..+...+..+ ......++++.|.+|+++ +=-..++|.....
T Consensus 211 ~F~-~lp~~a~~~gad-----~~~~~~~~vvqS~HKtL~-altQts~lh~~~~ 256 (417)
T PF01276_consen 211 GFH-PLPRSALALGAD-----RPNDPGIIVVQSTHKTLP-ALTQTSMLHVKGD 256 (417)
T ss_dssp GCS-GGGTTCSSTTSS------CTSBEEEEEEEHHHHSS-S-TT-EEEEEETC
T ss_pred cCC-CCccchhhccCc-----cccccceeeeechhhccc-ccccceEEEecCC
Confidence 23 111121112110 012346789999999984 2234456655443
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=133.97 Aligned_cols=350 Identities=11% Similarity=0.092 Sum_probs=187.5
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCC-CCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDY-HGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
....+||+..+ .+.+. .+.+.+++++..+ ....+... .+..+....+|+.+.+.+. +.+
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~-------------~~~~~~~~~~~~~~~~~~lae~L~~~~~---~~~ 150 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLN-------------KLPFYHSFWNRTTKPSLDLAKELLEMFT---ARK 150 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHh-------------hccceecccccCcHHHHHHHHHHHhhcC---CCC
Confidence 34568998775 34443 4556666655311 11111111 1223445555655543321 112
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCC-CEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLA-------EPG-EAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLNG 170 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~-------~~g-d~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~ 170 (469)
.+.+++++++++|+..+++... .++ +.|+..+-.|++.........|.. +..++.+ ..
T Consensus 151 ~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p--~~ 228 (504)
T PLN02760 151 MGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCP--HY 228 (504)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCC--cc
Confidence 3579999999999999998763 122 578888888777643222111321 1122211 00
Q ss_pred cc-------------cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 171 FQ-------------ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 171 ~~-------------~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|. ...+++++.+... ...++.+|++..-..-.|.+ .|.+-+++|.++|++||+++|.||++.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGf 306 (504)
T PLN02760 229 WRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAF 306 (504)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCC
Confidence 11 0113455554321 11245555544334455764 57888999999999999999999999764
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh--------cc-cccCcH
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM--------SS-FGLVSS 306 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~--------~~-~~~~s~ 306 (469)
.-.+..+ . .+... ..+. +.+++|.+| .| +.+|.++++ +.+.+.+... .. .+..++
T Consensus 307 GRtG~~~-a-~e~~g--------v~PD---ivtlgK~lg-gG~~PigAv~~~-~~i~d~~~~~~~~~~~~~h~~T~~gnP 371 (504)
T PLN02760 307 GRLGTMF-G-CDKYN--------IKPD---LVSLAKALS-SAYMPIGAVLVS-PEISDVIHSQSNKLGSFAHGFTYSGHP 371 (504)
T ss_pred cccchhh-H-HHhcC--------CCCc---EEEeccccc-CCccccceEeec-HHHHhhhhcccccccCcccCCCCCCCH
Confidence 2222211 1 11111 1122 347899998 67 589999885 4555544321 11 122466
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh---cCCceecCCceEEEEEecccccccCC-h----hHHHH
Q 043923 307 QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGLFCWVDMRHLLRSNT-F----EAEME 378 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~g~~v~~~~~g~~~~v~~~~~~~~~~-~----~~~~~ 378 (469)
++..++.+.|+...- +...++.++.-++|.+.|++ .++......-|.++.+.+........ . .....
T Consensus 372 l~~Aaala~Le~i~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~ 446 (504)
T PLN02760 372 VSCAVALEALKIYKE-----RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAY 446 (504)
T ss_pred HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHH
Confidence 666666665542211 11223333333444444433 33322122235777777743211110 0 11223
Q ss_pred HHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 379 LWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++..++ ++||.+.+.. ..+|++... ++++++++++++|.+++++..+
T Consensus 447 i~~~~~-~~Gvl~~~~g-------~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~ 494 (504)
T PLN02760 447 FGAECK-KRGMLVRVAG-------DNIMMSPPLIITPEEVDELISIYGKALKATEE 494 (504)
T ss_pred HHHHHH-hCCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444 6799997631 358999765 4999999999999999877654
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-12 Score=130.34 Aligned_cols=346 Identities=16% Similarity=0.111 Sum_probs=190.0
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ ...+. .+.+.+++++..+. ......+. -..+....+|+.+.+..+ ...
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----------~~~~~~~~---~~~~~~~~lAe~L~~~~p----~~~ 114 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDT----------LEHAMLAG---CTHEPAIELAERLAALTG----GTL 114 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHh----------cCCccccc---cCCHHHHHHHHHHHHhCC----CCC
Confidence 34568898766 44443 46666666653111 00001100 112344556666654322 123
Q ss_pred CcEEEeCChHHHHHHHHHHhc-------CC-CCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCC-
Q 043923 112 SKIVLTAGATSANETLMFCLA-------EP-GEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNG- 170 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~-------~~-gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~- 170 (469)
+.+++++++++|+..+++... .+ ..+|+...-+|++....+....|. .+..+|.....+
T Consensus 115 ~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 194 (453)
T PRK06943 115 GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGA 194 (453)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcccc
Confidence 589999999999999988752 12 357888888887754222211121 112222211000
Q ss_pred -cc--------cCHHHHHHHHHHHHhcCCceeEEEEec-CCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 171 -FQ--------ITETAIEEAYQLAQKRHLKVKGVLVTN-PSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 171 -~~--------~d~~~l~~~i~~~~~~~~~~~~vvl~~-P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
+. -+++.+++.+.. ...++.+|++.- ...-.|. ..+.+-+++|.++|++||+++|.||+..++.-.
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRt 271 (453)
T PRK06943 195 RPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRT 271 (453)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCC
Confidence 00 123555555542 223677766663 2555666 568899999999999999999999999874222
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH--------hcccccCcHHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--------MSSFGLVSSQTQY 310 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~--------~~~~~~~s~~~q~ 310 (469)
+.- .. .+.. +..+.++ +++|.+| .| +.+|.+++.+ .+.+.+.. ....+..++++..
T Consensus 272 G~~-fa-~~~~--------gv~PDiv---t~gKgl~-gG~~Pi~av~~~~-ei~~~~~~~~~~~~~~~~~T~~gnpl~~a 336 (453)
T PRK06943 272 GTF-FA-CEQA--------GVWPDFL---CLSKGIS-GGYLPLSLVLSRD-AIFAAFYDDDVTRGFLHSHSYTGNPLACR 336 (453)
T ss_pred cch-hH-HHhC--------CCCCCeE---eeehhhc-cCcccceEEEEcH-HHHHhhcccCccCCccCCCCCCCCHHHHH
Confidence 221 11 1111 1224444 5689998 89 5999999954 44444421 1111224666666
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHh
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYD 386 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~ 386 (469)
++.+.|+-.+- . ...++.++.-++|.+.|+++ ++.-.. .-|+++.+.+...... .......+...++ +
T Consensus 337 aa~a~L~~i~~-~----~l~~~~~~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~gvel~~~~~~-~~~~~~~i~~~~~-~ 408 (453)
T PRK06943 337 AALATLDLFAE-D----DVLARNARKSARLRAALAPLAAHPQVRHLR-QRGTIFAFDVALDGDA-ARTFSRRFFEAAL-E 408 (453)
T ss_pred HHHHHHHHHHh-c----CHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ccccEEEEEEccCCCc-chHHHHHHHHHHH-H
Confidence 66665543211 1 11222333334444444433 222122 3357777777521111 1111234455554 6
Q ss_pred CCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 387 VKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 387 ~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+||++.+.. +.+|++... ++++++++++++|.+++++.
T Consensus 409 ~Gll~~~~g-------~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 409 RELLLRPIG-------TTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred CCcEEEecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 799997631 358998655 59999999999999999875
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-12 Score=129.20 Aligned_cols=360 Identities=15% Similarity=0.117 Sum_probs=192.7
Q ss_pred CCCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 34 VQNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 34 ~~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
......+||+..+ ...+. .+.+.+++++.... . ...+..... .+....+|+.+.+... -
T Consensus 27 D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~----------~--~~~~~~~~~-~~~~~~lae~L~~~~p----~ 89 (447)
T PRK06917 27 DQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEE----------V--SFVYRSQFT-SEPAEKLAKKLSDLSP----G 89 (447)
T ss_pred eCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhh----------C--cCccccccC-CHHHHHHHHHHHHhCC----C
Confidence 3344568898765 33343 46666666653211 0 001110011 2445556666654321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-------CC-CCEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCC
Q 043923 110 DTSKIVLTAGATSANETLMFCLA-------EP-GEAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLN 169 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~-------~~-gd~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~ 169 (469)
..+.+++++++++|+..+++... .+ ..+|+...-.|++....+....+.. +..+|.....
T Consensus 90 ~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~ 169 (447)
T PRK06917 90 DLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCY 169 (447)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCccc
Confidence 23579999999999999998762 12 3678888888877654332211211 1112211000
Q ss_pred C--ccc--------CHHHHHHHHHHHHhcCCceeEEEEecCCC-CCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 170 G--FQI--------TETAIEEAYQLAQKRHLKVKGVLVTNPSN-PLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 170 ~--~~~--------d~~~l~~~i~~~~~~~~~~~~vvl~~P~N-PtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
. +.- +++.++..++.. ...++.+|++.-... -.|. ..+.+-+++|.++|++||+++|.||++.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfG 247 (447)
T PRK06917 170 RCPVQKVYPTCQLACATELETAIERI--GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLG 247 (447)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcC
Confidence 0 000 134555555421 112566666653233 3444 5678999999999999999999999998732
Q ss_pred cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHHHh-----c-ccccCcHHHHH
Q 043923 238 FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKM-----S-SFGLVSSQTQY 310 (469)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~~-----~-~~~~~s~~~q~ 310 (469)
-.+..+ . .+... ..+.++ +++|.+| .|+ .+|.+++.+ .+.+.+... . .....++++..
T Consensus 248 RtG~~~-a-~~~~g--------v~PDi~---~~gK~l~-~G~~Pi~a~~~~~-~i~~~~~~~~~~~~~~~T~~gnpl~~a 312 (447)
T PRK06917 248 RTGAMF-A-MEHWG--------VEPDIM---TLGKGLG-AGYTPIAATVVSD-RVMEPILRGSRSIMSGHTLSANPLSAA 312 (447)
T ss_pred cccchh-h-HHhcC--------CCCCEE---Eeeehhc-cCCcceEEEEEcH-HHHHHHhccCcccccccCCCCCHHHHH
Confidence 122211 1 11111 223333 6799998 885 999999954 444444321 1 11224666666
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEeccccccc-CC----hhHHHHHHH
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLRS-NT----FEAEMELWK 381 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~~-~~----~~~~~~l~~ 381 (469)
++.+.|+...- +...+.+++.-++|.+.|++ +++......-|+++.+.+...... .. ......++.
T Consensus 313 aa~a~l~~l~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~ 387 (447)
T PRK06917 313 TALAVLEYMEK-----HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELIS 387 (447)
T ss_pred HHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHH
Confidence 66666543210 11223333333444444443 333222223357777776321110 00 011234445
Q ss_pred HHHHhCCeEEeCCCC-CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 382 KIVYDVKLNISPGSS-CHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~-f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++ ++||++.|+.. ......+.+|++... ++++++++++++|.+++++..+
T Consensus 388 ~~~-~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 388 VAA-KNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred HHH-hCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 554 67999987521 111124579998875 4999999999999999987644
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-13 Score=141.40 Aligned_cols=178 Identities=14% Similarity=0.135 Sum_probs=125.7
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
-+.+..+..|+.|+ .....+++||+|.++.+++.+++++||+|+++..+|.+...++... |++++.++-.
T Consensus 206 ~I~eAq~~aA~~fg---------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~-ga~Pvyl~P~ 275 (755)
T PRK15029 206 AFGESEKYAARVFG---------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILT-GAKPVYMVPS 275 (755)
T ss_pred HHHHHHHHHHHHhC---------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeEEEeccc
Confidence 35666667777775 3567889999999999999999999999999999999999988887 9999988643
Q ss_pred CCCCcc----cC-----HHHHHHHHHHHHh----cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc
Q 043923 167 SLNGFQ----IT-----ETAIEEAYQLAQK----RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233 (469)
Q Consensus 167 ~~~~~~----~d-----~~~l~~~i~~~~~----~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay 233 (469)
. +.|. ++ ++.++++|++.+. .+.+++++++++|+. .|.+++. ++|+++|+++++.|++||||
T Consensus 276 ~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di---~~I~~~~h~~~~~llvDEAh 350 (755)
T PRK15029 276 R-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNA---KEAQDLLEKTSDRLHFDEAW 350 (755)
T ss_pred c-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCH---HHHHHHHHhcCCeEEEECcc
Confidence 2 2222 23 7889998865321 223556999999876 8999884 55899999999999999999
Q ss_pred cccc-cCCCCccchhhhhhccccccCCcCCe-EEEEccCccccCCCcceEEE-EEe
Q 043923 234 SGTV-FSSPGFVSIMEILKDRNCENTQVWNR-VHIVYSLSKDLGLPGFRVGA-IYS 286 (469)
Q Consensus 234 ~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~g~~GlRiG~-li~ 286 (469)
+... |.. .++....+..+. ....+- ++++.|.+|++ |++.-|. +..
T Consensus 351 Gah~~F~~-~~p~~sa~~~~~----~~~~Gad~~vvqStHKtL--~alTQaS~LHv 399 (755)
T PRK15029 351 YGYARFNP-IYADHYAMRGEP----GDHNGPTVFATHSTHKLL--NALSQASYIHV 399 (755)
T ss_pred ccccccCc-cccccccccccc----cccCCCceEEEEchhhcc--cchhhhhhhee
Confidence 7642 322 121111110000 000123 48899999998 5555554 444
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-12 Score=131.62 Aligned_cols=352 Identities=14% Similarity=0.114 Sum_probs=189.4
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ .+.+. .|.+.+++++... ....+.... ..+.+..+|+.+.+... -.
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-------------~~~~~~~~~-~~~~~~~lae~L~~~~p----~~ 111 (451)
T PRK06062 50 YEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAA-------------RLCTVAPAH-ANDARSEAARLIAERAP----GD 111 (451)
T ss_pred CCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHH-------------hcCCcCCcc-CCHHHHHHHHHHHHhCC----CC
Confidence 344568888765 34343 4566666655311 111111111 13445556666654321 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCE-----------EEEeeccC--CCCcc--c
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVE-----------IVPIQCTS--LNGFQ--I 173 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~-----------~~~v~~~~--~~~~~--~ 173 (469)
.+.+++++++++|...+++... ....+|+...-.|++....+....+.. +..++.+. ...|. -
T Consensus 112 ~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 191 (451)
T PRK06062 112 LSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATT 191 (451)
T ss_pred CCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCC
Confidence 4689999999999999988753 234578888888877653332211211 12222111 00010 1
Q ss_pred C-------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 174 T-------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 174 d-------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
| ++.+++.++.. ...++.+|++..-..-.|.+ .+.+-+++|.++|++||+++|+||++.+ |+.....-
T Consensus 192 ~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tG--fGRtG~~~ 267 (451)
T PRK06062 192 EEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAG--FGRTGKWF 267 (451)
T ss_pred hHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccC--CCcCcHHH
Confidence 2 45566665421 11356665555334455665 5788899999999999999999999987 43211010
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHHHh---cc-cccCcHHHHHHHHHHhcCch
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKM---SS-FGLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~~---~~-~~~~s~~~q~~~~~~l~~~~ 320 (469)
..+... ..+.+ .+++|.+| .|+ .+|.+++.+ .+.+.+... .. .+..++++..++.+.|+..+
T Consensus 268 a~~~~g--------v~PDi---~t~gK~lg-gG~~Pigav~~~~-~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~ 334 (451)
T PRK06062 268 AIEHFG--------VVPDL---ITFAKGVN-SGYVPLGGVAISE-AIAATFADRPYPGGLTYSGHPLACAAAVATINAME 334 (451)
T ss_pred HHHhcC--------CCCCe---eeechhhh-cCCcCcEEEEEcH-HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 111111 12232 37899998 884 999999955 455544321 11 12245666666666554321
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHh----cCCceecCCceEEEEEecccccccCC--------hhHHHHHHHHHHHhC
Q 043923 321 FTQNYISENKKRLKQRH-RKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLRSNT--------FEAEMELWKKIVYDV 387 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~-~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~~~~--------~~~~~~l~~~ll~~~ 387 (469)
- . ...+..++.- +++.+.|++ .++......-|+++.+.+........ ......++..++ ++
T Consensus 335 ~-~----~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 408 (451)
T PRK06062 335 E-E----GIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK-ER 408 (451)
T ss_pred h-c----CHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH-HC
Confidence 1 0 1122222221 233333333 33211122235677677642110000 011234455544 67
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 388 KLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 388 GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
||.+.+. .+.+|++... +++++++++++++.+++++.+..
T Consensus 409 Gvl~~~~-------~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~~ 449 (451)
T PRK06062 409 GLLPFVN-------GNRIHVVPPCTVTEDEVREGLAILDAALAVADAA 449 (451)
T ss_pred CcEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 9998642 2469998865 59999999999999999876653
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-12 Score=128.19 Aligned_cols=342 Identities=14% Similarity=0.096 Sum_probs=184.2
Q ss_pred CCCCCeeeeeccc--cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLAE--NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+- ..+. .|.+.+++++..+ ....+. . . .+....+|+.+.+... .
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~-~-~-~~~~~~la~~l~~~~p-----~ 108 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIITGHAHPHITKAITEAAE-------------NGVLYG-T-P-TELEIEFAKMLKEAIP-----S 108 (428)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hCCccC-C-C-CHHHHHHHHHHHHhCC-----C
Confidence 3345688987653 3343 4666666665311 111111 1 1 2334555655543321 2
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCEEEE--------eeccC-CCCc---ccCHH
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVEIVP--------IQCTS-LNGF---QITET 176 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~--------v~~~~-~~~~---~~d~~ 176 (469)
.+.+++++++++|+..+++... .....|+...-.|++....+....|..... ++... .+-+ ..|++
T Consensus 109 ~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 188 (428)
T PRK12389 109 LEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIE 188 (428)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHH
Confidence 4689999999999999988753 234678888888877654332211211100 00000 0000 01678
Q ss_pred HHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccc
Q 043923 177 AIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 255 (469)
Q Consensus 177 ~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~ 255 (469)
.+++.+++. +.++.+|++..-....|.+ .+.+.+++|.++|++||+++|.||++.++ .. ......+...
T Consensus 189 ~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~--Rt-~~~~a~~~~g---- 258 (428)
T PRK12389 189 ALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF--RF-MYGGAQDLLG---- 258 (428)
T ss_pred HHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc--cc-CcchhhHHhC----
Confidence 888877632 2256665655335556765 46888999999999999999999999874 21 1111111111
Q ss_pred ccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----cccccCcHHHHHHHHHHhcCchhhHHHHHHHH
Q 043923 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFTQNYISENK 330 (469)
Q Consensus 256 ~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 330 (469)
..+.+ -+++|.+| .|+.+|.++++ +.+.+.+... ...+..++++..++.+.|+...- . ...
T Consensus 259 ----v~PDi---vt~gK~lg-gG~Pi~av~~~-~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~-~----~l~ 324 (428)
T PRK12389 259 ----VEPDL---TALGKIIG-GGLPIGAYGGR-KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ-E----GVY 324 (428)
T ss_pred ----CCCCe---eeechhhc-CCCceeEEeEH-HHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc-c----cHH
Confidence 12233 27899998 89999999884 4455544311 11122566666666555542211 1 122
Q ss_pred HHHHHHHHHHHHHHH----hcCCceec-CCceEEEEEeccccccc-------CChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 331 KRLKQRHRKLVSGLE----KAGISCLK-SNAGLFCWVDMRHLLRS-------NTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 331 ~~l~~~~~~l~~~L~----~~g~~v~~-~~~g~~~~v~~~~~~~~-------~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
+++++.-++|.+.|+ ++++.+.. ...|++ .+.+...... ........+...+ .++||.+.+..
T Consensus 325 ~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~--- 399 (428)
T PRK12389 325 EKLDRLGAMLEEGILEAAEKHGITITINRLKGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLM-LNQGINLAPSK--- 399 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHH-HHCCcEeecCC---
Confidence 223333344444443 34533222 223333 3444221100 0111122344444 46799998752
Q ss_pred CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 399 CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 399 ~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
.+.+.+++. +++++++++++++.+++++
T Consensus 400 ---~~~~~~~l~-~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 400 ---YEAWFLTTA-HTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred ---CCCeeecCC-CCHHHHHHHHHHHHHHHHh
Confidence 112445554 5999999999999999864
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=133.65 Aligned_cols=316 Identities=12% Similarity=0.151 Sum_probs=189.5
Q ss_pred CCCCcHHHHHHHHHHHHhHcCC-C-------CCC-CCCcEEEeCChHHHHHHHHHHhcC---------------------
Q 043923 84 DYHGLPAFKKALVEFMSEIRGN-K-------VTF-DTSKIVLTAGATSANETLMFCLAE--------------------- 133 (469)
Q Consensus 84 ~~~g~~~Lr~aia~~l~~~~~~-~-------~~~-~~~~i~~t~G~~~al~~~~~~l~~--------------------- 133 (469)
..+...++++.+.+++.+..+. . ... +...-++|+|+|+|+..++.+..+
T Consensus 123 ~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~ 202 (522)
T TIGR03799 123 TSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAAL 202 (522)
T ss_pred cCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhh
Confidence 3445579999999998876420 0 000 112357799999998887766321
Q ss_pred -----CCCEEEEccCCCcChHHHHhhhCCC---EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCC
Q 043923 134 -----PGEAFLLPTPYYPGFDRDLKWRTGV---EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205 (469)
Q Consensus 134 -----~gd~Vl~~~P~y~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG 205 (469)
++..|++..-.|.+...++... |+ +++.+|++. ++.+|+++|+++|++....+.++-+|+-+..++.||
T Consensus 203 ~~~~~~~~~v~~S~~~H~S~~kaa~~l-glg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tG 279 (522)
T TIGR03799 203 KHYGYDGLAILVSERGHYSLGKAADVL-GIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETG 279 (522)
T ss_pred hhccCCceEEEECCCchHHHHHHHHHc-CCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCC
Confidence 1346888888888888888777 87 788999874 568999999999976544433344444445577899
Q ss_pred CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEE
Q 043923 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIY 285 (469)
Q Consensus 206 ~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li 285 (469)
.+-|.+ +|+++|+++|+++++|.+|+....-.. ....++.. ......+..|.+|.++ ....+|.++
T Consensus 280 aiDpl~---eIa~i~~~~g~~lHVDaA~gg~~~~~~---~~r~~l~g-------le~aDSit~d~HK~l~-~P~g~G~ll 345 (522)
T TIGR03799 280 NIDPLD---EMADIAQELGCHFHVDAAWGGATLLSN---TYRHLLKG-------IERADSVTIDAHKQLY-VPMGAGMVL 345 (522)
T ss_pred CcCCHH---HHHHHHHHcCCeEEEEchhhhHHHhCH---HHHHHhcC-------chhCCEEEEChhhcCC-cCcccEEEE
Confidence 998855 588899999999999999985432111 11122221 1234556679999775 557799998
Q ss_pred ecCHHHHHHHHHhccc---------------ccCc--HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 043923 286 SNDDMVVAAATKMSSF---------------GLVS--SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA- 347 (469)
Q Consensus 286 ~~~~~~~~~~~~~~~~---------------~~~s--~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 347 (469)
..++...+.+.....+ ++-+ .+..+++...+.. .-++...++..+..+++.+.|++.
T Consensus 346 vr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~-----~G~~~ii~~~~~la~~l~~~L~~~~ 420 (522)
T TIGR03799 346 FKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGR-----KGYELLIDQSIEKAKYFADLIQQQP 420 (522)
T ss_pred EeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8665543333221000 1001 1123333333332 234666677777888899999877
Q ss_pred CCceecCCceEEEEEec-ccccccC----------C----hhHH-HHHHHHHHHhCCeEEeCCCC-----CCCCCCCeEE
Q 043923 348 GISCLKSNAGLFCWVDM-RHLLRSN----------T----FEAE-MELWKKIVYDVKLNISPGSS-----CHCTEPGWFR 406 (469)
Q Consensus 348 g~~v~~~~~g~~~~v~~-~~~~~~~----------~----~~~~-~~l~~~ll~~~GI~v~pg~~-----f~~~~~~~iR 406 (469)
++++..+..-..+.+++ |...... . ...- ..+.+++ .+.|........ +...+...+|
T Consensus 421 ~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~-~~~G~~~vs~t~l~~~~~~g~~~~~lR 499 (522)
T TIGR03799 421 DFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQ-REAGKSFVSRTRLTPAQYDHQPTVVFR 499 (522)
T ss_pred CeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHH-HhcCCEEEEEEEecccccCCCCcEEEE
Confidence 78876654334555554 2211100 0 0001 2233333 344665443221 2111234799
Q ss_pred EEeecC--CHHHHHHHHH
Q 043923 407 VCFANM--SEDTLKLSMQ 422 (469)
Q Consensus 407 i~~~~~--~~e~i~~~l~ 422 (469)
+++... ++++++.+++
T Consensus 500 ~~~~np~tt~~~i~~~l~ 517 (522)
T TIGR03799 500 VVLANPLTTHEILQDILD 517 (522)
T ss_pred EEecCCCCCHHHHHHHHH
Confidence 999773 7788777664
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-12 Score=128.97 Aligned_cols=309 Identities=14% Similarity=0.104 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCE--------
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVE-------- 159 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~-------- 159 (469)
+....+|+.+.+..+ -..+.+++++++++|+..++.... .....|+.....|++....+....|..
T Consensus 113 ~~~~~lae~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~ 188 (459)
T PRK06082 113 ETAIECAEKLTEIAG----GELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGP 188 (459)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCC
Confidence 444555555554322 124689999999999999987753 233678888887776543222111211
Q ss_pred ----EEEeeccC--CCCcc-cC------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeE
Q 043923 160 ----IVPIQCTS--LNGFQ-IT------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIH 226 (469)
Q Consensus 160 ----~~~v~~~~--~~~~~-~d------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~ 226 (469)
+..+|... ...|. .| ++.+++.++. ..++.+|++.-..+..+...+.+-+++|.++|++||++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~l 264 (459)
T PRK06082 189 LMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVL 264 (459)
T ss_pred CCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 12222110 00011 01 2345555532 22566655543344445577888999999999999999
Q ss_pred EEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH---hcccc
Q 043923 227 LISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK---MSSFG 302 (469)
Q Consensus 227 iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~---~~~~~ 302 (469)
+|.||++.++.-.+..+ . .+... ..+.++ +++|.+| .| +.+|.+++.+. +...... ..++
T Consensus 265 lI~DEV~tG~GRtG~~f-a-~e~~g--------v~PDiv---~~gKgl~-gG~~P~~av~~~~~-i~~~~~~~~~~~T~- 328 (459)
T PRK06082 265 LIIDEIPNGMGRTGEWF-T-HQAYG--------IEPDIL---CIGKGLG-GGLVPIAAMITKDK-YNTAAQISLGHYTH- 328 (459)
T ss_pred EEEechhhCCCccchhh-H-hHhhC--------CCCCEE---Eeccccc-CCCCcceEEEEcHH-HHhhccCCCCCCCC-
Confidence 99999998732222211 1 11111 223333 4899998 77 59999998544 4333221 1122
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEecccccccC--ChhHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLRSN--TFEAE 376 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~~~--~~~~~ 376 (469)
..++++..++.+.|+...- +...++.++.-++|.+.|++ +++......-|.++.+.+....... .....
T Consensus 329 ~gnpl~~aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~ 403 (459)
T PRK06082 329 EKSPLGCAAALATIEVIEQ-----EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEA 403 (459)
T ss_pred CcCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHH
Confidence 2566666666555542210 11233333344444444443 3332222233577777775321111 11112
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
..++..++ ++||.+.+. ..+.+|++... +++++++++++++.+++.+..+.
T Consensus 404 ~~~~~~~~-~~Gvl~~~~------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~~ 455 (459)
T PRK06082 404 EAVLYRCL-NNGLSFKVS------QGNVIQLSPPLIITREELTQALAILEEAIAKICQD 455 (459)
T ss_pred HHHHHHHH-hCCCEEEec------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhhh
Confidence 34445554 679999763 13579999765 59999999999999999887663
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-12 Score=131.66 Aligned_cols=354 Identities=13% Similarity=0.088 Sum_probs=189.4
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ ...+. ++.+.+++.+.... ......+. ....+.+.++|+.+.+... ..
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----------~~~~~~~~--~~~~~~~~~lae~L~~~~p----~~ 108 (460)
T PRK06105 45 DAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKK----------LPFYHTFS--HKSHGPVIDLAEKLVAMAP----VP 108 (460)
T ss_pred CCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHh----------CCCeeccc--ccCCHHHHHHHHHHHHhCC----CC
Confidence 334568998765 34443 46666666653111 00001111 0112334445555544321 23
Q ss_pred CCcEEEeCChHHHHHHHHHHhc------C-C-CCEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLA------E-P-GEAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLNG 170 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~------~-~-gd~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~ 170 (469)
.+.+++++++++|+..+++... . + ...|+...-.|++....+....+.. +..+|......
T Consensus 109 ~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~ 188 (460)
T PRK06105 109 MSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYR 188 (460)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccc
Confidence 4689999999999999998742 1 2 3578887877776543321111211 11222110000
Q ss_pred cc-----------cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 171 FQ-----------ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 171 ~~-----------~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+. ...+++++.+... ...++.+|++..-..-.|.. .+.+-+++|.++|++||+++|.||++.++.-
T Consensus 189 ~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GR 266 (460)
T PRK06105 189 FGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGR 266 (460)
T ss_pred cccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCc
Confidence 00 0124455555321 12356665555335555664 5888999999999999999999999976422
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh---------cccccCcHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM---------SSFGLVSSQT 308 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~---------~~~~~~s~~~ 308 (469)
.+.. .. .+... ..+.++ +++|.+| .| +.+|++++++ .+.+.+... ...+..++++
T Consensus 267 tG~~-f~-~~~~~--------v~PDi~---~~gK~lg-gG~~P~~av~~~~-~i~~~~~~~~~~~~~~~h~~T~~gnpl~ 331 (460)
T PRK06105 267 TGNM-FG-CETFG--------IKPDIL---VMSKQLS-SSYQPLSAVLMNE-KVYDPIADESGKIGTFGHGFTASGHPVA 331 (460)
T ss_pred Cchh-hh-HHhcC--------CCCCee---eeecccc-cCcccceEEEEcH-HHHHHHhcccccCcccccCCCCCCCHHH
Confidence 2221 11 11111 223333 7899998 67 6899999954 444444321 1112255666
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh---cCCceecCCceEEEEEecccccccC-Ch----hHHHHHH
Q 043923 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGLFCWVDMRHLLRSN-TF----EAEMELW 380 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~g~~v~~~~~g~~~~v~~~~~~~~~-~~----~~~~~l~ 380 (469)
..++.+.|+-..- +...+..++.-++|.+.|++ +++-.....-|+++.+++....... .+ .....+.
T Consensus 332 ~aaa~a~L~~i~~-----~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~ 406 (460)
T PRK06105 332 AAVALENLAIIEE-----RDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARAN 406 (460)
T ss_pred HHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHH
Confidence 6665555542211 11222333333444444433 3322222233577777764211100 00 1112344
Q ss_pred HHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
..+ .++||.+.+. .+.+|++... ++++++++++++|.+++++..+.
T Consensus 407 ~~~-~~~Gvl~~~~-------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~ 453 (460)
T PRK06105 407 AAA-HEHGVISRAM-------GDTLAFCPPLIITAAQVDEMVDRFGRALDDVAAW 453 (460)
T ss_pred HHH-HHCCeEEEec-------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4679999863 1379999876 49999999999999999876553
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-12 Score=129.61 Aligned_cols=309 Identities=15% Similarity=0.104 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-------C-CCEEEEccCCCcChHHHHhhhCCC---
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-------P-GEAFLLPTPYYPGFDRDLKWRTGV--- 158 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------~-gd~Vl~~~P~y~~~~~~~~~~~g~--- 158 (469)
+....+|+.+.+... -..+.+++++++++|++.+++.... + ..+|+....+|++....+....+.
T Consensus 90 ~~~~~lae~L~~~~p----~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~ 165 (459)
T PRK05965 90 EPAIRLAAKLAERAP----GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAF 165 (459)
T ss_pred HHHHHHHHHHHhhCC----CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchh
Confidence 333455555543321 1346899999999999999987431 2 357888888888764321111111
Q ss_pred ---------EEEEeeccC--CCCcccCH--------HHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHH
Q 043923 159 ---------EIVPIQCTS--LNGFQITE--------TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVN 218 (469)
Q Consensus 159 ---------~~~~v~~~~--~~~~~~d~--------~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~ 218 (469)
.+..+|... ...+..|. +.+++.+... ...++.+|++.-.+...|. +.|.+-+++|.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~ 243 (459)
T PRK05965 166 HRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMRE 243 (459)
T ss_pred hcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHH
Confidence 012222110 00011122 4555555421 1136777666644555676 468889999999
Q ss_pred HHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH
Q 043923 219 IITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 219 ~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~ 297 (469)
+|++||+++|.||+..++.-.+.- .. .+.. +..+.++ +++|.+| .| +.+|.+++.++ +.+.+..
T Consensus 244 lc~~~gillI~DEV~tGfGRtG~~-~a-~~~~--------gv~PDiv---~~gKgl~-gG~~Pi~av~~~~~-i~~~~~~ 308 (459)
T PRK05965 244 ACRELGILFVADEVITGFGRTGPL-FA-CEAE--------GVVPDLM---TVAKGLT-SGYVPMGAVLMSDH-VYQGIAD 308 (459)
T ss_pred HHHHcCCEEEEechhccCccCchh-hh-Hhhc--------CCCCCeE---Eechhhc-cCCcceeEEEEcHH-HHHHHhc
Confidence 999999999999999874222221 11 1111 1223444 5789998 89 59999999544 4443321
Q ss_pred -------h--cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---CCceecCCceEEEEEecc
Q 043923 298 -------M--SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA---GISCLKSNAGLFCWVDMR 365 (469)
Q Consensus 298 -------~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---g~~v~~~~~g~~~~v~~~ 365 (469)
. ...+..++++..++.+.|+-.+- +...+..++.-++|.+.|+++ ++-.....-|+++.+.+.
T Consensus 309 ~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~ 383 (459)
T PRK05965 309 GAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE-----GGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELV 383 (459)
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEe
Confidence 1 11122566666666555542210 111222333334444545443 221112233577777764
Q ss_pred cccccCCh-----hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 366 HLLRSNTF-----EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 366 ~~~~~~~~-----~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
........ .....+...+ .++||.+.+. +++.+|+.... ++++++++++++|.+++++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~i~~~~-~~~Gll~~~~------g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 384 ADKATKTPFDAALDPADRIFDRA-YANGLVFRAF------GDGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred ccccccCCCCchhHHHHHHHHHH-HhCCeEEEec------CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 31111000 1122344444 4679999753 24579998766 49999999999999999865
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-12 Score=128.72 Aligned_cols=305 Identities=15% Similarity=0.121 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-------C-CCEEEEccCCCcChHHHHhhhCCC----
Q 043923 91 FKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-------P-GEAFLLPTPYYPGFDRDLKWRTGV---- 158 (469)
Q Consensus 91 Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------~-gd~Vl~~~P~y~~~~~~~~~~~g~---- 158 (469)
....+|+.+.+... ...+.|++++++++|++.+++.... + ..+|+.....|++....+....|.
T Consensus 93 ~~~~la~~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~ 168 (445)
T PRK09221 93 LAFELAERLAELAP----GGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNR 168 (445)
T ss_pred HHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhh
Confidence 34446666554321 1246899999999999999876431 1 357888888887764322111111
Q ss_pred --------EEEEeeccC---CCCccc--------CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHH
Q 043923 159 --------EIVPIQCTS---LNGFQI--------TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVN 218 (469)
Q Consensus 159 --------~~~~v~~~~---~~~~~~--------d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~ 218 (469)
.+..+|... ...+.. ..+.+++.++.. ...++.+|++..-....|.. .+.+-+++|.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~ 246 (445)
T PRK09221 169 KMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLRE 246 (445)
T ss_pred hccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHHH
Confidence 122222210 000111 124555555421 11356666655435556764 46778899999
Q ss_pred HHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH
Q 043923 219 IITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 219 ~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~ 297 (469)
+|++||+++|+||++.++.-.+..+ ..+... ..+.+ -+++|.++ .| +.+|.+++++ .+.+.+..
T Consensus 247 lc~~~g~llI~DEV~tG~GRtG~~~--~~~~~g--------v~PDi---~~~gK~l~-gG~~Pi~av~~~~-~i~~~~~~ 311 (445)
T PRK09221 247 ICDKHGILLIFDEVITGFGRLGAAF--AAERFG--------VTPDI---ITFAKGLT-NGAIPMGAVIASD-EIYDAFMQ 311 (445)
T ss_pred HHHHcCCEEEEeehhhCCCcCchhh--HHHhcC--------CCCCE---EEeccccc-cCcccceeeEEcH-HHHHhhcc
Confidence 9999999999999997632112211 111111 11222 37899997 66 6899998854 44443321
Q ss_pred --------hcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCce-e-cCCceEEEEEecc
Q 043923 298 --------MSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISC-L-KSNAGLFCWVDMR 365 (469)
Q Consensus 298 --------~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v-~-~~~~g~~~~v~~~ 365 (469)
... ....++++..++.+.|+...- +...++.++.-+++.+.|+++ +... . ...-|.++.+.+.
T Consensus 312 ~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~-----~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~ 386 (445)
T PRK09221 312 GPEYAIEFFHGYTYSAHPVACAAGLATLDIYRE-----EDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELA 386 (445)
T ss_pred CcccccccccccCCCcCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEe
Confidence 011 112455665555555542210 123344555556666666654 2221 1 1123466666664
Q ss_pred cccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 366 HLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 366 ~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
....... ....+++..++ ++||.+.++ .+.+|++... ++++++++++++|++++++
T Consensus 387 ~~~~~~~-~~~~~~~~~~~-~~Gv~~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 387 PRPGAPG-ARGYEAFMKCF-EKGLLVRYT-------GDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred ccccccc-chHHHHHHHHH-HCCeEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 3111111 11234555555 669999753 2469999776 4999999999999999865
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-12 Score=127.62 Aligned_cols=311 Identities=13% Similarity=0.069 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CEEEEccCCCcChHHHHhhhCCC---
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-------PG-EAFLLPTPYYPGFDRDLKWRTGV--- 158 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------~g-d~Vl~~~P~y~~~~~~~~~~~g~--- 158 (469)
+.+..+|+.+.+..+. -..+.+++++++++|++.+++.... +| .+|+...-.|++....+....+.
T Consensus 86 ~~~~~lae~L~~~~~~---~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~ 162 (449)
T PRK07481 86 PRAIELSYELIDMFAP---EGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVF 162 (449)
T ss_pred HHHHHHHHHHHHhcCC---CCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccc
Confidence 4445566666543210 1246899999999999999887531 23 57888888887754322211111
Q ss_pred ---------EEEEeeccC--CCCcc-cCHHHHHHHHH----HHH--hcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHH
Q 043923 159 ---------EIVPIQCTS--LNGFQ-ITETAIEEAYQ----LAQ--KRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNI 219 (469)
Q Consensus 159 ---------~~~~v~~~~--~~~~~-~d~~~l~~~i~----~~~--~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~ 219 (469)
.+..++.+. ...|+ .|++.+++.+. +.. ....++.+|++.--..-.|. ..+.+-+++|.++
T Consensus 163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l 242 (449)
T PRK07481 163 RRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV 242 (449)
T ss_pred ccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence 112222110 00121 13444433221 111 11235666665533444566 4577889999999
Q ss_pred HHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh
Q 043923 220 ITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM 298 (469)
Q Consensus 220 ~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~ 298 (469)
|++||+++|.||+..++...+..+ . .+... ..+.++ +++|.+| .| +.+|.+++++ .+.+.+...
T Consensus 243 c~~~g~llI~DEV~tGfGRtG~~~-a-~~~~g--------v~PDiv---~~gKgl~-gG~~Pi~av~~~~-~i~~~~~~~ 307 (449)
T PRK07481 243 CDRHGILLIADEVVTGFGRTGSWF-G-SRGWG--------VKPDIM---CLAKGIT-SGYVPLGATMVNA-RIADAFEAN 307 (449)
T ss_pred HHHcCCEEEEeehhhCcCcCchhh-H-hhhcC--------CCCCEE---EEeeccc-CCCcCceEEEEcH-HHHHHHhcc
Confidence 999999999999998742222211 1 11111 223333 5689998 78 5999999954 454444321
Q ss_pred --------c-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEecc
Q 043923 299 --------S-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMR 365 (469)
Q Consensus 299 --------~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~ 365 (469)
. .....++++..++.+.|+...- +...+..++.-++|.+.|++ +++......-|.++.+.+.
T Consensus 308 ~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~ 382 (449)
T PRK07481 308 ADFGGAIMHGYTYSGHPVACAAALATLDIVVR-----EDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLV 382 (449)
T ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEec
Confidence 1 1122466666666666543211 11222233333444444443 3332222233577777774
Q ss_pred cccccC---C--hhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 366 HLLRSN---T--FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 366 ~~~~~~---~--~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
...... . ......+...++ ++||.+.+.. +.+|++... ++++++++++++|.+++++.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g-------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 383 ADKATREPIDPSKGYANAVADVAR-ENGVLVRPSG-------TKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred ccccccCCCCchhHHHHHHHHHHH-hCCeEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 321100 0 111223445544 6799998642 248998765 49999999999999999764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-12 Score=129.67 Aligned_cols=330 Identities=14% Similarity=0.055 Sum_probs=183.6
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+ ...+. .|.+.+++.+..+ ....+.. ..+....+|+.+.+.. ..+
T Consensus 74 G~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~-------------~~~~~~~---~~~~~~~lAe~l~~~~------~~~ 131 (453)
T PRK07046 74 GHRYDDFCLGDTGAMFGHSPAPVARALAEQAR-------------RGLTTML---PSEDAAWVGEELARRF------GLP 131 (453)
T ss_pred CCEEEEecccccccccCCCCHHHHHHHHHHHH-------------hCCCCCC---CCHHHHHHHHHHHHHh------CCC
Confidence 3468888655 33343 4666666665311 1111111 1344555666665432 357
Q ss_pred cEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhh--hCC----------C------EEEEeeccCCCCcc
Q 043923 113 KIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKW--RTG----------V------EIVPIQCTSLNGFQ 172 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~--~~g----------~------~~~~v~~~~~~~~~ 172 (469)
.+.++++++||...+++... ...++|+...-+|++....... ..+ . .++.+| |
T Consensus 132 ~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~- 204 (453)
T PRK07046 132 YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE------F- 204 (453)
T ss_pred EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC------C-
Confidence 89999999999999988753 2346788888888876322110 001 1 111111 1
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhh
Q 043923 173 ITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250 (469)
Q Consensus 173 ~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~ 250 (469)
.|++.+++.+.. .++.+|++. | ....|. ..+.+-++++.++|++||+++|.||+.. +-.+-... ....
T Consensus 205 nd~~~l~~~l~~-----~~vAavi~E-Pi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~---~~~~ 274 (453)
T PRK07046 205 NDLAALEAALAD-----GDVAAVLAE-PAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGY---TRAH 274 (453)
T ss_pred CCHHHHHHHhCC-----CCeEEEEEC-CCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcch---hHHh
Confidence 167888877742 256665554 6 333454 4566789999999999999999999986 21111111 1111
Q ss_pred hccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----------cccccCcHHHHHHHHHHhc--
Q 043923 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----------SSFGLVSSQTQYLLSALLS-- 317 (469)
Q Consensus 251 ~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-----------~~~~~~s~~~q~~~~~~l~-- 317 (469)
. ..+.++ +++|.+| .|+.+|.++++ +.+.+.+... ...+..++++..++.+.|+
T Consensus 275 g--------v~PDi~---t~gK~lg-gG~Pi~av~g~-~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l 341 (453)
T PRK07046 275 G--------LEPDFL---VVGKPIA-GGVPCAVYGFS-AELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEV 341 (453)
T ss_pred C--------CCccce---eehhhhc-CCCcceeeeeh-HHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHH
Confidence 1 222333 6899998 89999999984 4454444321 0112246666666665554
Q ss_pred -CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccc-cccc-------CChhHHHHHHHHHHHhCC
Q 043923 318 -DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH-LLRS-------NTFEAEMELWKKIVYDVK 388 (469)
Q Consensus 318 -~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~-~~~~-------~~~~~~~~l~~~ll~~~G 388 (469)
+.+. .+.+.+.-+++ ++.|.+.+.+.++.+....-|..+.+.+.. .... ........++..++ ++|
T Consensus 342 ~~~~~-~~~~~~~g~~l---~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G 416 (453)
T PRK07046 342 MTEAA-YAHMLALAARL---AAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLL-NRG 416 (453)
T ss_pred hcccH-HHHHHHHHHHH---HHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHH-HCC
Confidence 3332 22222222222 333444444556543222223334444321 1100 01111233445555 569
Q ss_pred eEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 389 LNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 389 I~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
|.+.|.. +.++++.. +++++++++++++.+++++.
T Consensus 417 v~~~~~~-------~~~~~~p~-~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 417 VLITPFH-------NMMLVCPA-TTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred CEEeccc-------CcEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 9997631 34788876 69999999999999998754
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-12 Score=128.19 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=195.6
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCC--cEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTS--KIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~ 162 (469)
+..++++.+.+|+.+.++ .+++ .=++|+|+|+++..++.+..+ +...++++.-+|.++..++... |++++.
T Consensus 130 ~s~~~E~~Vi~wla~L~g----~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~ll-gi~~~~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWE----IEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMECVK 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhc-CCcceE
Confidence 468999999999998877 3332 357899999999988877643 3347888899999999999887 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCe-----EEEEeccccccc
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNI-----HLISDEIYSGTV 237 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~-----~iI~Deay~~~~ 237 (469)
||.+ .++.+|+++|+++|.+. ..++-+|+.+-++-++|.+=+ +++|.++|+++|+ ++.+|.||+++.
T Consensus 205 Vp~d--~~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~ 276 (470)
T PLN02263 205 VDTL--VSGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLM 276 (470)
T ss_pred eccC--CCCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhH
Confidence 9987 45689999999999752 113556666777889999866 5558888889986 999999998864
Q ss_pred cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh------cccc-cCc-----
Q 043923 238 FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM------SSFG-LVS----- 305 (469)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~------~~~~-~~s----- 305 (469)
..-........+ ..+..-+..+.+|.++ ....+|.++..+..+ ..+... .... ..+
T Consensus 277 lPf~~~~~~~df----------~~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~ 344 (470)
T PLN02263 277 MPFVKRAPKVTF----------KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHA 344 (470)
T ss_pred hhhcccccccCC----------CcCccEEEECCccccC-CCcCEEEEEEehhhH-hhhccChHhhCCCCCCcCCCCCcHH
Confidence 421111111111 1123344568999886 778999999865433 222111 0001 111
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHH
Q 043923 306 SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVY 385 (469)
Q Consensus 306 ~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~ 385 (469)
++..++....+. .+-+.+..++..+..+++.+.|++.|+.....+..+.+.+..+. + + ..
T Consensus 345 al~lW~~L~~~G-----~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~--------~--~----~~- 404 (470)
T PLN02263 345 PIFLWYTLNRKG-----YRGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPK--------D--E----EF- 404 (470)
T ss_pred HHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCc--------h--H----Hh-
Confidence 222333333322 33346666666777788999999888876544444556565442 0 0 11
Q ss_pred hCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 386 DVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 386 ~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
..|..+..- +..++|++.. ++.+.++++++.|++..+..
T Consensus 405 ~~gW~L~~~-------~~~~Hivvmphv~~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 405 VRRWQLACQ-------GNIAHVVVMPSVTIEKLDYFLKELVEKRSTW 444 (470)
T ss_pred hcceEEccC-------CCcEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence 236666531 2458998876 58899999999999887754
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-12 Score=128.06 Aligned_cols=346 Identities=14% Similarity=0.073 Sum_probs=185.7
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+ ...+. .+.+.+++++..+ .....+......+....+|+.+.+... -..+
T Consensus 45 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~l~~~~~~~~~~~~~~~la~~l~~~~p----~~~~ 107 (442)
T PRK13360 45 GRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAG-------------ELDYAPAFQMGHPKAFELANRIAEIAP----GGLN 107 (442)
T ss_pred CCEEEECchhHHHhccCCCCHHHHHHHHHHHH-------------hCCCcccCCcCCHHHHHHHHHHHHhCC----CCCC
Confidence 3467888655 23343 4666666665311 111111111113444556666654321 1246
Q ss_pred cEEEeCChHHHHHHHHHHhcC-------C-CCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccC---CC
Q 043923 113 KIVLTAGATSANETLMFCLAE-------P-GEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTS---LN 169 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~-------~-gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~---~~ 169 (469)
.+++++++++|++.+++.... + ..+|+.....|++....+....|. .+..+|... ..
T Consensus 108 ~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~ 187 (442)
T PRK13360 108 HVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARN 187 (442)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhcc
Confidence 899999999999999876431 2 357888888888764322111111 112233211 00
Q ss_pred Cccc--------CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 170 GFQI--------TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 170 ~~~~--------d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
.|.. ..+.+++.+... ...++.+|++.......|.. .+.+-+++|.++|++||+++|+||++.++.-.+
T Consensus 188 ~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG 265 (442)
T PRK13360 188 AFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG 265 (442)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc
Confidence 1111 134555555421 11355555554335556765 578889999999999999999999997642122
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH--------hcc-cccCcHHHHH
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--------MSS-FGLVSSQTQY 310 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~--------~~~-~~~~s~~~q~ 310 (469)
..+ ..+... ..+.++ +++|.+| .| +.+|.+++++ .+.+.+.. ... ....++++..
T Consensus 266 ~~~--a~~~~g--------v~PDiv---t~gK~l~-gG~~P~gav~~~~-~i~~~~~~~~~~~~~~~~~~T~~g~pl~~a 330 (442)
T PRK13360 266 APF--AAQYFG--------VTPDLL---TCAKGLT-NGAIPMGAVFVSS-EIHDAFMQGPEAGIEFFHGYTYSGHPLACA 330 (442)
T ss_pred cch--hhhhcC--------CCCcee---eeeeccc-cCccceEEEEEcH-HHHHHhhcCCccccccccCCCCCCCHHHHH
Confidence 211 111111 112222 7899997 67 7899998854 44443321 111 1124566666
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-Cceec--CCceEEEEEecccccccCChhHHHHHHHHHHHhC
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLK--SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV 387 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~--~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~ 387 (469)
++.+.|+-.. + +...++.++.-+++.+.|+++. ..... ...|++.-+.+........ ....+++..++ ++
T Consensus 331 aa~a~L~~l~---~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~-~~~~~~~~~l~-~~ 403 (442)
T PRK13360 331 AALATLDLYE---R--EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPG-KRAYEVFLKCF-EK 403 (442)
T ss_pred HHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcc-hhHHHHHHHHH-HC
Confidence 6555554211 0 1223344444455555555431 21111 1224555555532111111 22234556555 66
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 388 KLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 388 GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
||.+.++ .+.+|++... ++++++++++++|.+++++
T Consensus 404 Gvl~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 404 GLMIRYT-------GDILALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred CcEEEec-------CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 9999753 2469999766 4999999999999999865
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-12 Score=130.91 Aligned_cols=292 Identities=17% Similarity=0.172 Sum_probs=176.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC------hHHHHhhhCCCEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG------FDRDLKWRTGVEIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~------~~~~~~~~~g~~~~ 161 (469)
+..+++.+|++++ .+..+++++++.|+..++.++ .+||.|++....+.. +...+... |++++
T Consensus 129 ~~~~e~~lA~l~G----------ae~a~vv~sgtaAl~l~l~~l-~~GdeVIvs~~e~~~~ggs~~i~~~~~~~-G~~l~ 196 (464)
T PRK04311 129 DRALAALLCALTG----------AEDALVVNNNAAAVLLALNAL-AAGKEVIVSRGELVEIGGAFRIPDVMRQA-GARLV 196 (464)
T ss_pred HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHh-CCCCEEEEcchhhhhcCcchhhHHHHHHC-CcEEE
Confidence 3677888888875 346778888889999888665 899999998764432 22344555 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCC--CC--CCCCHHHHHHHHHHHHhcCeEEEEecccccc-
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP--LG--TTMSRNELNLLVNIITEKNIHLISDEIYSGT- 236 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NP--tG--~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~- 236 (469)
.++.+. ..++++++++|++ ++++|++.+++|| +| ...+ +++|+++|++||+++|+|.+.+.+
T Consensus 197 ~v~~~~----~t~~~dle~aI~~------~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~ 263 (464)
T PRK04311 197 EVGTTN----RTHLRDYEQAINE------NTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLV 263 (464)
T ss_pred EECCCC----CCCHHHHHHhcCc------cCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccc
Confidence 988642 1468889998875 8999999999998 34 4455 666899999999999999964321
Q ss_pred ---ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHH
Q 043923 237 ---VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYL 311 (469)
Q Consensus 237 ---~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~ 311 (469)
.|+-...+.+.... ..+..+++.|.+|.+|-| ..|++++.++.+ +.+++ +.-...+......+
T Consensus 264 ~~~~~gl~~~p~~~~~l---------~~GaDiv~fSg~K~LgGp--~~G~i~g~~~li-~~l~~~~~~r~lr~dk~~l~~ 331 (464)
T PRK04311 264 DLSQYGLPDEPTVQELL---------AAGVDLVTFSGDKLLGGP--QAGIIVGKKELI-ARLKKHPLKRALRVDKLTLAA 331 (464)
T ss_pred cchhccCCCCCchhhHH---------hcCCcEEEecCcccccCC--ceEEEEEcHHHH-HHHhhchhHHHHhcchHHHHH
Confidence 01101112222221 235678899999998634 589999855444 33331 10011122222223
Q ss_pred HHHHhc----Cch-h----hHHHHHHHHHHHHHHHHHHHHHHHhcC---C--ceecC----CceEE-------EEEeccc
Q 043923 312 LSALLS----DKK-F----TQNYISENKKRLKQRHRKLVSGLEKAG---I--SCLKS----NAGLF-------CWVDMRH 366 (469)
Q Consensus 312 ~~~~l~----~~~-~----~~~~~~~~~~~l~~~~~~l~~~L~~~g---~--~v~~~----~~g~~-------~~v~~~~ 366 (469)
..+.|. ... + ..+.+....+++.++.+.+.+.|+.+. + ++.+. .||-. ..+.+..
T Consensus 332 l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~ 411 (464)
T PRK04311 332 LEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTP 411 (464)
T ss_pred HHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeC
Confidence 222222 111 1 012233344667778888888887752 2 33322 01111 1122221
Q ss_pred ccccCChhHHHHHHHHHHHhCC--eEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 367 LLRSNTFEAEMELWKKIVYDVK--LNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 367 ~~~~~~~~~~~~l~~~ll~~~G--I~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
. . ....++. ..|++.. |..+ ..++.+.+-+..+.+++++.++++|++++.
T Consensus 412 ~----~-~~~~~l~-~~lr~~~~~i~~r-------~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 412 K----D-RSLEALA-ARLRLLPPPVIGR-------IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred C----C-CCHHHHH-HHHhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 0 0 1122333 4455533 4443 236678898887899999999999998764
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-11 Score=127.50 Aligned_cols=295 Identities=16% Similarity=0.118 Sum_probs=156.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCCC-EEEEccCCCcChHH-HHhhhCCCE-----------EEEeeccC--C
Q 043923 111 TSKIVLTAGATSANETLMFCLA-------EPGE-AFLLPTPYYPGFDR-DLKWRTGVE-----------IVPIQCTS--L 168 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~-------~~gd-~Vl~~~P~y~~~~~-~~~~~~g~~-----------~~~v~~~~--~ 168 (469)
.+.+++++++++|+..+++... ++++ .|+...-+|++... .+... |.. +..+|... .
T Consensus 115 ~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s-~~~~~~~~~~~~~~~~~~~~p~~~~ 193 (460)
T PRK12403 115 YSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALG-GMKFMHEMGGLIPDVAHIDEPYWYA 193 (460)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcC-CCccccccCCCCCCCEEeCCCcccc
Confidence 4789999999999999998863 2333 34455556665432 22221 222 22222110 0
Q ss_pred CCcccC--------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 169 NGFQIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 169 ~~~~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
..+... .+.+++.+.+. ...++.+|++..-..-.|.+ .+.+-+++|.++|++||+++|.||++.++.-.
T Consensus 194 ~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRt 271 (460)
T PRK12403 194 NGGELTPAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRT 271 (460)
T ss_pred cccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 000111 23344444321 11245555554324455764 57788999999999999999999999764212
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHHHh------cccccCcHHHHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKM------SSFGLVSSQTQYLL 312 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~~------~~~~~~s~~~q~~~ 312 (469)
+..+ . .+... ..+.++ +++|.+| .|. .+|.+++. +.+.+.+... ......++++..++
T Consensus 272 G~~~-a-~e~~g--------v~PDiv---~~gK~lg-gG~~Piga~v~~-~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaa 336 (460)
T PRK12403 272 GEWF-A-HEHFG--------FEPDTL---SIAKGLT-SGYVPMGGLVLS-KRIAEALVEQGGVFAHGLTYSGHPVAAAVA 336 (460)
T ss_pred chhh-h-hhhcC--------CCCCeE---EEccccc-ccccceEEEEEC-HHHHHHHhcCCCccccCCCCCCCHHHHHHH
Confidence 2211 1 11111 223333 4899998 885 99999984 4455444311 11112456666666
Q ss_pred HHHhcCchhhHHHHHHHH-HHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc-CChh----HHHHHHHHHHHh
Q 043923 313 SALLSDKKFTQNYISENK-KRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS-NTFE----AEMELWKKIVYD 386 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~-~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~-~~~~----~~~~l~~~ll~~ 386 (469)
.+.|+-.+- .+.+++.+ +.-...++.|.+..+++++......-|.++.+.+...... .... ....+... +.+
T Consensus 337 la~L~~i~~-~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 414 (460)
T PRK12403 337 IANLKALRD-EGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTI-GFE 414 (460)
T ss_pred HHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHH-HHh
Confidence 665542211 11122221 1111122223333333443222233457777877432110 0000 01122233 346
Q ss_pred CCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 387 VKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 387 ~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+||.+.+.. +.+|++... ++++++++++++|.+++++..
T Consensus 415 ~Gll~~~~~-------~~~~l~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 415 EGVIIRSTL-------GRMIMAPALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred CCEEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 799997431 248898886 499999999999999998753
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-12 Score=128.24 Aligned_cols=346 Identities=11% Similarity=0.075 Sum_probs=186.4
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ ...+. .+.+.+++++..+ ....+.-. .+....+|+.+.+..+ ...
T Consensus 51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~---~~~~~~la~~L~~~~~----~~~ 110 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAE-------------RGTSYGLT---SEQEILFAEELFSYLG----LED 110 (433)
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHH-------------hCCCCCCC---CHHHHHHHHHHHHhCC----CCc
Confidence 34467888765 33343 4667776665311 11122111 2344555655554322 223
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHH----HhhhCCCEEEE----e--eccCCC----CcccCH
Q 043923 112 SKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRD----LKWRTGVEIVP----I--QCTSLN----GFQITE 175 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~----v--~~~~~~----~~~~d~ 175 (469)
+.+.++++++||+..+++... .....|+...-+|++.... .... +..... . +..... .| .|+
T Consensus 111 ~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~d~ 188 (433)
T PRK00615 111 HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFS-ETSLDTLTHLVDTDLAHPLTLSLPY-NDF 188 (433)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccC-CCCcCcCCCCCCCCCCCCCeEeCCC-CCH
Confidence 689999999999999988753 2235788888888775311 1111 110000 0 000000 01 267
Q ss_pred HHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 176 TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 176 ~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
+.+++.+.+. ..++.+|++.......|... +.+-+++|.++|++||+++|+||++.++ ..+.. ...+...
T Consensus 189 ~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~--ga~~~~g--- 259 (433)
T PRK00615 189 QIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQG--GAAAIYH--- 259 (433)
T ss_pred HHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHh--HHHHhcC---
Confidence 8888877542 23555555443344557654 5778899999999999999999999764 22221 1111111
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-----ccccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----SFGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
..+.++ +++|++| .|+.+|+++++ +.+.+.+.... ..+..+++...++.+.|+-.+- .+..++.
T Consensus 260 -----v~PDi~---~~gK~lg-gG~p~~av~~~-~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~-~~~~~~~ 328 (433)
T PRK00615 260 -----VKPDIT---VYGKILG-GGLPAAAVVAH-KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE-QGFYTQL 328 (433)
T ss_pred -----CCCCeE---EEccccc-CCcceeeeeec-HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc-ccHHHHH
Confidence 112232 5899998 78899999995 44545442211 1112355565555555442111 1112222
Q ss_pred HHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc-------CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 330 KKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~-------~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
.+.-...++.|.+.+.+.|+.+.....|.++.+.+...... ........+...++ ++||.+.|...- .
T Consensus 329 ~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~ 403 (433)
T PRK00615 329 STLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAF-SKGVYLSPSPFE----A 403 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHH-HCCeeecCcccc----c
Confidence 22222222334455555565543323567777777532100 01122234555555 669999876421 1
Q ss_pred CeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 403 GWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 403 ~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+ ++.. +++++|+++++++.++++..
T Consensus 404 ~~--ls~~-ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 404 SF--LSSA-HSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred cc--eecC-CCHHHHHHHHHHHHHHHHHH
Confidence 11 3444 49999999999999998764
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-12 Score=127.78 Aligned_cols=265 Identities=15% Similarity=0.151 Sum_probs=161.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-CCC-CEEEEccCCCcChHHHHhhhCC-------C-----EEEEeeccCCCCcccCHH
Q 043923 111 TSKIVLTAGATSANETLMFCLA-EPG-EAFLLPTPYYPGFDRDLKWRTG-------V-----EIVPIQCTSLNGFQITET 176 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~-~~g-d~Vl~~~P~y~~~~~~~~~~~g-------~-----~~~~v~~~~~~~~~~d~~ 176 (469)
.+.+++++++++|++.+++... .+| +.|+....+|.+....+....+ . .+..+|. .|++
T Consensus 81 ~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-------~d~~ 153 (364)
T PRK04013 81 YEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-------NDVE 153 (364)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-------CCHH
Confidence 4689999999999999998763 234 7899999888876433322111 1 1122221 1567
Q ss_pred HHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccc
Q 043923 177 AIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 255 (469)
Q Consensus 177 ~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~ 255 (469)
.+++.+.+ ++.+|++.......|. ..+.+.++++.++|++||+++|.||++.++ -.+. ..... ...
T Consensus 154 ~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~-~~g---- 220 (364)
T PRK04013 154 AAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIE-HYK---- 220 (364)
T ss_pred HHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHH-hcC----
Confidence 77777753 7787776644555555 457788999999999999999999999874 2222 11111 111
Q ss_pred ccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 043923 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 256 ~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 335 (469)
..+.++ +++|.+| .|+.+|.++.... +.. .....++ ..++++..++.+.|+-.+- ++.+++.++.
T Consensus 221 ----v~PDiv---~~gK~lg-gG~P~~a~~~~~~-~~~-~~~~~T~-~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~--- 285 (364)
T PRK04013 221 ----VEPDIV---TMGKGIG-NGVPVSLTLTNFD-VER-GKHGSTF-GGNPLACKAVAVTLRILRR-ERLVEKAGEK--- 285 (364)
T ss_pred ----CCCCEE---Eeccccc-CCceeEEEEeccc-ccC-CCcCCCC-CcCHHHHHHHHHHHHHHHh-ccHHHHHHHH---
Confidence 223444 5699998 7999999998544 211 1111222 2566666666665543211 1112222221
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCH
Q 043923 336 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSE 414 (469)
Q Consensus 336 ~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~ 414 (469)
+. .+.. .+-.....-|+++-+++... ...+...++ ++|+.+.+. +.+.+|+.... +++
T Consensus 286 ----l~-~l~~-~~v~~vRG~Gl~~gve~~~~--------~~~i~~~~~-~~Gll~~~~------g~~vlr~~Ppl~it~ 344 (364)
T PRK04013 286 ----FI-EIKG-ERVVTTRGRGLMIGIVLKKP--------VGKYVEELQ-NRGYLVHTA------GQRVIRLLPPLIISK 344 (364)
T ss_pred ----HH-Hhcc-CcceeeeeCcEEEEEEeCCc--------HHHHHHHHH-hCCcEEeeC------CCCEEEEeCCcccCH
Confidence 21 2221 11011122368888888531 123455544 679999753 23679999877 499
Q ss_pred HHHHHHHHHHHHHHHhh
Q 043923 415 DTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 415 e~i~~~l~~L~~~l~~~ 431 (469)
+++++++++|.+++++.
T Consensus 345 ~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 345 DTMEEAKSAIEGVINDI 361 (364)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998753
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-12 Score=128.49 Aligned_cols=340 Identities=14% Similarity=0.072 Sum_probs=187.4
Q ss_pred CCCeeeeecc--cccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+ .+.+ ..+.+.+++++..+. .... .+. . -..+....+|+.+.+..+ ...+
T Consensus 42 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----------~~~~-~~~-~-~~~~~~~~la~~L~~~~p----~~~~ 104 (428)
T PRK07986 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA----------MSHV-MFG-G-ITHPPAIELCRKLVAMTP----QPLE 104 (428)
T ss_pred CCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhh----------cCCc-ccc-c-cCCHHHHHHHHHHHhhCC----CCcC
Confidence 3457888765 3333 346677776653211 0000 000 0 012444556666654322 2246
Q ss_pred cEEEeCChHHHHHHHHHHhcC-------CCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCC---C
Q 043923 113 KIVLTAGATSANETLMFCLAE-------PGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSL---N 169 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~-------~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~---~ 169 (469)
.+++++++++|++.+++.... ...+|+....+|++....+....+- .++.+|.... .
T Consensus 105 ~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 184 (428)
T PRK07986 105 CVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDG 184 (428)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccch
Confidence 899999999999999886531 2367888888887754222111121 1112222100 0
Q ss_pred Cc-ccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 170 GF-QITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 170 ~~-~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
.| .-|++.+++.++. .+.++.+|++... +.-.|. ..+.+.+++|.++|++||+++|+||++.++.-.+..+ .
T Consensus 185 ~~~~~d~~~l~~~l~~---~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~f-a- 259 (428)
T PRK07986 185 EWDERDIAPFARLMAA---HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLF-A- 259 (428)
T ss_pred hhHHHHHHHHHHHHHh---CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCee-e-
Confidence 01 1245666666643 1235666555532 444565 4567899999999999999999999997632222211 1
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh--------cccccCcHHHHHHHHHHhc
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM--------SSFGLVSSQTQYLLSALLS 317 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~--------~~~~~~s~~~q~~~~~~l~ 317 (469)
.+... ..+.++ +++|++| .| +.+|.++++ +.+.+.+... .+++ .++++..++.+.|+
T Consensus 260 ~~~~g--------v~PDi~---t~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~L~ 325 (428)
T PRK07986 260 CEHAG--------IAPDIL---CLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFM-GNPLACAVANASLS 325 (428)
T ss_pred ecccC--------CCCCEE---Eechhhh-CCcccCcchhch-HHHHHHhhcCCCCccccCCCCC-cCHHHHHHHHHHHH
Confidence 11111 112233 5899997 88 588888884 4455544321 1222 45666666555554
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee--cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCC
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL--KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPG 394 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg 394 (469)
...- ...+++.+++-+++.+.|+++ ..... ....|+++.+.+.... ....+...+ .++||.+.+.
T Consensus 326 ~i~~-----~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~------~~~~~~~~l-~~~Gl~~~~~ 393 (428)
T PRK07986 326 LLES-----GDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV------NMAALQRFF-VEQGVWIRPF 393 (428)
T ss_pred HHHh-----CCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc------cHHHHHHHH-HHCCcEEEec
Confidence 2210 012333444444555555543 11111 1123567777775321 122344554 4679999864
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 395 SSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 395 ~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
. +.+|+.... ++++++++++++|.+++++.
T Consensus 394 g-------~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 424 (428)
T PRK07986 394 G-------KLIYLMPPYIILPEQLQRLTAAVNRAVQDE 424 (428)
T ss_pred C-------CEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 1 379998776 49999999999999998643
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.6e-12 Score=127.03 Aligned_cols=355 Identities=13% Similarity=0.092 Sum_probs=188.3
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ .+.+. .|.+.+++++..+ ....+....-..+....+|+.+.+... -.
T Consensus 27 ~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~-------------~~~~~~~~~~~~~~~~~lae~L~~~~p----~~ 89 (443)
T PRK07483 27 ATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQID-------------RLAYAHTSFFTTEPAEALADRLVAAAP----AG 89 (443)
T ss_pred CCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHH-------------hccCccccccCCHHHHHHHHHHHHhCC----CC
Confidence 344568998765 44443 4666666665311 111001000113444566666654321 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------CC-CEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLAE-------PG-EAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLNG 170 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~-------~g-d~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~ 170 (469)
.+.+++++++++|+..+++.... +| .+|+...-+|++....+....|-. +..++.. ..
T Consensus 90 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~--~~ 167 (443)
T PRK07483 90 LEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPC--YA 167 (443)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCC--cc
Confidence 46899999999999999886431 23 468888888877643222111211 1112211 01
Q ss_pred ccc-----C--------HHHHHHHHHHHHhcCCceeEEEEecC-CC-CCC-CCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 171 FQI-----T--------ETAIEEAYQLAQKRHLKVKGVLVTNP-SN-PLG-TTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 171 ~~~-----d--------~~~l~~~i~~~~~~~~~~~~vvl~~P-~N-PtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
|.. + ++.+++.+.. ....++.+|++. | .- -.| ...+.+-+++|.++|++||+++|.||+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvivE-Piqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 244 (443)
T PRK07483 168 YREQRAGESDEAYGQRLADELEAKILE--LGPDTVAAFVAE-TVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC 244 (443)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHh--cCCCceEEEEEe-CcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee
Confidence 110 0 1344444431 112356666665 5 32 235 45678899999999999999999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHHHh------cccccCcHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKM------SSFGLVSSQ 307 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~~------~~~~~~s~~ 307 (469)
++.-.+.- .. .+... ..+.++ +++|.+| .|+ .+|.+++.++ +.+.+... ...+..+++
T Consensus 245 GfGRtG~~-~a-~~~~g--------v~PDiv---~~gK~l~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~h~~T~~gnpl 309 (443)
T PRK07483 245 GMGRTGTL-FA-CEEDG--------VAPDLV---TIAKGLG-AGYQPIGAVLASDR-IYDAIADGSGFFQHGHTYLGHAT 309 (443)
T ss_pred CcccCcHH-HH-HhhcC--------CCCCee---eehhhhc-cCccccEEEEEcHH-HHHHHhcCCCccccCCCCCCCHH
Confidence 74211211 11 11111 223334 5799998 896 9999999544 44444321 111225666
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH----hcCCceecCCceEEEEEecccccccCC-----hhHHHH
Q 043923 308 TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE----KAGISCLKSNAGLFCWVDMRHLLRSNT-----FEAEME 378 (469)
Q Consensus 308 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~----~~g~~v~~~~~g~~~~v~~~~~~~~~~-----~~~~~~ 378 (469)
+..++.+.|+-.+- +...+..++.-++|.+.|+ ++++......-|+++.+++........ ......
T Consensus 310 ~~aaa~a~l~~i~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~ 384 (443)
T PRK07483 310 ACAAALAVQRVIAE-----DGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHAR 384 (443)
T ss_pred HHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHH
Confidence 66666665542210 1112222233333444443 333211122335777777642211000 011223
Q ss_pred HHHHHHHhCCeEEeCCCC-CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 379 LWKKIVYDVKLNISPGSS-CHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~~-f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
++..++ ++||++.+... ......+.+|+.... ++++++++++++|.+++++..
T Consensus 385 ~~~~~~-~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 385 IKREAM-ARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred HHHHHH-HCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455555 67999986421 101113579998876 499999999999999998644
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-12 Score=127.67 Aligned_cols=337 Identities=14% Similarity=0.088 Sum_probs=182.7
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ ...+. .+.+.+++++..+. .. ...+... ..+....+|+.+.+... -.
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~----------~~-~~~~~~~--~~~~~~~lae~L~~~~p----~~ 99 (422)
T PRK05630 37 EDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDT----------MS-HVMFGGL--THEPAIKLTRKLLNLTD----NG 99 (422)
T ss_pred CCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHh----------CC-CcccCCc--CCHHHHHHHHHHHhhCC----CC
Confidence 344568898765 33343 46666666653211 00 0011101 12334445555543321 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------CC-CEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLAE-------PG-EAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSLN 169 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~-------~g-d~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~ 169 (469)
.+.+++++++++|++.+++.... ++ .+|+....+|++....+....+- .+..+|...
T Consensus 100 ~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~-- 177 (422)
T PRK05630 100 LDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPP-- 177 (422)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCc--
Confidence 46899999999999999887431 22 57888888887754332211121 112233221
Q ss_pred CcccCH-------HHHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 170 GFQITE-------TAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 170 ~~~~d~-------~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
....+. +.+++.+.+ ++.+|++.-- ..-.|. ..+.+-+++|.++|++||+++|.||++.++...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~------~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG 251 (422)
T PRK05630 178 VRGSSPQEISEYLRSLELLIDE------TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG 251 (422)
T ss_pred ccCCChHHHHHHHHHHHHHHhh------ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc
Confidence 011111 223333321 6777666631 555676 4577899999999999999999999997742112
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh---------cccccCcHHHHH
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM---------SSFGLVSSQTQY 310 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~---------~~~~~~s~~~q~ 310 (469)
.. .. .+... ..+.++ +++|.++ .| ..+|++++++ .+.+.+... .++ ..++++..
T Consensus 252 ~~-~a-~~~~g--------v~PDi~---t~gK~l~-gG~~p~~av~~~~-~i~~~~~~~~~~~~~~h~~T~-~g~Pla~a 315 (422)
T PRK05630 252 EL-FA-TLAAG--------VTPDIM---CVGKALT-GGFMSFAATLCTD-KVAQLISTPNGGGALMHGPTF-MANPLACA 315 (422)
T ss_pred hh-hH-HHhcC--------CCCCee---eeechhh-cCccccceeeccH-HHHHHHhccCCCCccccCCCC-cCCHHHHH
Confidence 11 11 11111 222333 7899997 77 4889999854 444444321 122 24566665
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec--CCceEEEEEecccccccCChhHHHHHHHHHHHhC
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK--SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV 387 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~--~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~ 387 (469)
++.+.|+...- . ..++.+.+.-++|.+.|+++ ...... ..-|+++-+.+.... ....+...+ .++
T Consensus 316 aa~aaL~~l~~-~----~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~------~~~~~~~~~-~~~ 383 (422)
T PRK05630 316 VAHASLEIIET-G----MWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPV------DMEEATQAA-VDH 383 (422)
T ss_pred HHHHHHHHHHh-C----cHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcc------cHHHHHHHH-HHC
Confidence 55555442210 0 11223333334444444432 111111 122577878875321 112344444 467
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 388 KLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 388 GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
||.+.+. .+.+|+.... ++++++++++++|.++++..
T Consensus 384 Gl~~~~~-------g~~l~~~PpL~it~~~i~~~~~~l~~al~~~ 421 (422)
T PRK05630 384 GVWLRPF-------GRLVYVMPPYITTSEQIAQICAALAAAVKAK 421 (422)
T ss_pred CeEEEec-------CCEEEEECCccCCHHHHHHHHHHHHHHHhcc
Confidence 9999753 1478998876 49999999999999999754
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-12 Score=127.93 Aligned_cols=283 Identities=14% Similarity=0.090 Sum_probs=165.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------C-CCEEEEccCCCcChHHHHhhhCCC-------------EEEEeeccCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLAE-------P-GEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCTSLN 169 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~-------~-gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~ 169 (469)
.+.+++++++++|++.+++.... + ..+|+....+|++....+....|- .+..+|... .
T Consensus 104 ~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 182 (429)
T PRK06173 104 LNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPS-I 182 (429)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCC-c
Confidence 46899999999999999887531 2 357888888887742211111010 011222210 0
Q ss_pred Ccc-----cCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 170 GFQ-----ITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 170 ~~~-----~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
.+. -+++.+++.++. .+.++.+|++.-- ..-.|.. .+.+-+++|.++|++||+++|+||++.++.-.+..
T Consensus 183 ~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~ 259 (429)
T PRK06173 183 KFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKL 259 (429)
T ss_pred ccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcc
Confidence 010 134556666642 2336777666632 5556765 78899999999999999999999999763111221
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH-------hcccccCcHHHHHHHHH
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-------MSSFGLVSSQTQYLLSA 314 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~ 314 (469)
+ . .+... ..+. |+ +++|.++ .| +.+|.+++.+ .+.+.+.. ....+..++++..++.+
T Consensus 260 ~-a-~~~~g--------v~PD-iv--~~gK~l~-gG~~p~~a~~~~~-~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a 324 (429)
T PRK06173 260 F-A-LEHAG--------VVPD-IM--CIGKALT-GGYLTLSATITTE-AIAQTICSGEAKCFMHGPTFMANPLACAIAAE 324 (429)
T ss_pred h-H-HHhcC--------CCCC-EE--Eeehhhh-CCccccceEEecH-HHHHHHhcCCCCccccCCCCCcCHHHHHHHHH
Confidence 1 1 11111 1122 33 4899997 78 4788888844 44444421 11111245566665555
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC--CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEE
Q 043923 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS--NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNI 391 (469)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~--~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v 391 (469)
.|+-.. + +..++.+.++-++|.+.|+++ +...... ..|+++-+.+.... ....+...+ .++||.+
T Consensus 325 ~l~~i~---~--~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~------~~~~i~~~l-~e~Gi~v 392 (429)
T PRK06173 325 SIRLLL---E--SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV------NMATLQPRF-VEHGIWV 392 (429)
T ss_pred HHHHHH---h--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc------cHHHHHHHH-HHCCeEE
Confidence 554211 1 112444455555666666644 3332221 23577777775321 122344444 5679999
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 392 SPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 392 ~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+.. +.+|+.... ++++++++++++|.+++.+.
T Consensus 393 ~~~g-------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 393 RPFG-------KLVYIMPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred EecC-------CEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 7641 379999887 49999999999999999754
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-11 Score=114.07 Aligned_cols=285 Identities=19% Similarity=0.205 Sum_probs=192.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCC-CcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 111 TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY-YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~-y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+--.++...++.++++++-.++.|||.|++.... |..-...+...+|++|..++.+. +-...++.+.+++.++
T Consensus 68 ~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~--G~~~~le~i~~~lsqh---- 141 (385)
T KOG2862|consen 68 AQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADI--GQAVPLEEITEKLSQH---- 141 (385)
T ss_pred CceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCc--ccCccHHHHHHHHHhc----
Confidence 3345566668889999999999999999887664 54433333333499999998774 3357789999999864
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
+++++++++-...||..-+. +..+-++|++|+.++++|.+-+ .++.++. + |.++..+....
T Consensus 142 -~p~~vfv~hgdsSTgV~q~~--~~~~g~lc~k~~~lllVD~VaS---lggt~F~-m------------DewgVDvaytg 202 (385)
T KOG2862|consen 142 -KPKAVFVTHGDSSTGVLQDL--LAISGELCHKHEALLLVDTVAS---LGGTEFE-M------------DEWGVDVAYTG 202 (385)
T ss_pred -CCceEEEEecCccccccchH--HHHHHHHhhcCCeEEEEechhh---cCCccce-e------------hhhcccEEEec
Confidence 99999999998899998762 3346778899999999999987 5555432 1 24566677667
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhc--------------cc-----------ccCcHHHHHHHHHHhcCchhhHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMS--------------SF-----------GLVSSQTQYLLSALLSDKKFTQN 324 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--------------~~-----------~~~s~~~q~~~~~~l~~~~~~~~ 324 (469)
--|++|+|. .++-+..++... ..++... .+ .+++....+.+.++|... .++
T Consensus 203 SQKaL~aP~-GLsiisfS~ka~-~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I--~ee 278 (385)
T KOG2862|consen 203 SQKALGAPA-GLSIISFSDKAL-EAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALI--AEE 278 (385)
T ss_pred chhhcCCCC-CcceeecCHHHH-HHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHH--HHH
Confidence 779998542 344444434333 3332211 11 224455566666666543 255
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceecC----CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 325 YISENKKRLKQRHRKLVSGLEKAGISCLKS----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~----~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
-++...++.++..++++..|+++|++..-. .....-.+.+|...+.+ +.+.++...+++.+.-|- ++.
T Consensus 279 GL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~------dVv~~~~~~~~vei~ggl--g~~ 350 (385)
T KOG2862|consen 279 GLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWK------DVVAYAMSHYVVEIGGGL--GPT 350 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHH------HHHHHHHHhcCEEecccc--CCC
Confidence 578888999999999999999988753211 11112345666554443 466777766677665443 444
Q ss_pred CCCeEEEEeecC--CHHHHHHHHHHHHHHHHhhc
Q 043923 401 EPGWFRVCFANM--SEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 401 ~~~~iRi~~~~~--~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+..+||.+-.. +.+.++..++.|+.++.+..
T Consensus 351 ~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 351 VGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred cccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 567899998542 78999999999998887654
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-11 Score=127.16 Aligned_cols=352 Identities=13% Similarity=0.052 Sum_probs=190.0
Q ss_pred CCCCeeeeecc--cccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCC-CCC
Q 043923 36 NPTGIIQMGLA--ENQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKV-TFD 110 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~-~~~ 110 (469)
....+||+..+ .+.+ ..+.+.+++++..+. +...... ... .+....+|+.+.+...... .-.
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----------l~~~~~~--~~~-~~~~~~lae~L~~~~p~~~~~~~ 128 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGE----------LEQVMLA--GFT-HEPAVQLAEQLLAIAPRQDGRAP 128 (472)
T ss_pred CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHh----------CCCcccc--ccC-CHHHHHHHHHHHHhCCCcccCCC
Confidence 34468888765 4444 346666666553110 0001110 011 2334556666654321000 002
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------C-CCEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCC-
Q 043923 111 TSKIVLTAGATSANETLMFCLAE-------P-GEAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLN- 169 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~-------~-gd~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~- 169 (469)
.+.+++++++++|+..+++.... + ..+|+...-+|++....+....|.. +..+|.....
T Consensus 129 ~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~ 208 (472)
T PRK08742 129 LSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYL 208 (472)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccc
Confidence 35899999999999999887531 2 3578888888877653332221211 1222221100
Q ss_pred -Cccc--------CHHHHHHHHHHHHhcCCceeEEEEec-CCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 170 -GFQI--------TETAIEEAYQLAQKRHLKVKGVLVTN-PSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 170 -~~~~--------d~~~l~~~i~~~~~~~~~~~~vvl~~-P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
.+.. +++.+++.++. ...++.+|++.- ...-.|. ..+.+-++++.++|++||+++|.||+..++..
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGR 285 (472)
T PRK08742 209 AEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGR 285 (472)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 0011 23455555532 223666666553 1455676 56889999999999999999999999987432
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHHH--------hcccccCcHHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATK--------MSSFGLVSSQTQ 309 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~--------~~~~~~~s~~~q 309 (469)
.+.-+ . .+... ..+.++ +++|.+| .|+ .+|.+++.+ .+.+.+.. ....+..++++.
T Consensus 286 tG~~~-a-~e~~g--------v~PDiv---~~gKgl~-gG~~Plaav~~~~-ei~~~~~~~~~~~~~~h~~T~~gnpl~~ 350 (472)
T PRK08742 286 TGTLF-A-CEQAG--------VMPDLL---CLSKGLT-GGFLPLSAVLATQ-QLYDAFLDDSRERAFLHSHSYTGNPLAC 350 (472)
T ss_pred Cccch-H-HHhcC--------CCCCEE---EEccccc-CCCCCcceeeccH-HHHHHhhccCccCccCcCCCCCccHHHH
Confidence 23211 1 11111 223444 5689998 884 999999954 44443321 011122466666
Q ss_pred HHHHHHhcC---chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCCh-----hHHHHHHH
Q 043923 310 YLLSALLSD---KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTF-----EAEMELWK 381 (469)
Q Consensus 310 ~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~-----~~~~~l~~ 381 (469)
.++.+.|+- .+. .+...+.-+++ ..+.+.+.++.+-.....-|+++.+.+......... .....+..
T Consensus 351 Aaa~a~L~~i~~~~l-~~~~~~~g~~l----~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~ 425 (472)
T PRK08742 351 AAALATLDIFADDDV-IARNQPTAARM----TQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYR 425 (472)
T ss_pred HHHHHHHHHHHHCCH-HHHHHHHHHHH----HHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHH
Confidence 666655542 222 22222222222 223333444432112223457777877532111110 01123445
Q ss_pred HHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 382 KIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.++ ++||.+.+. .+.+|+.... ++++++++++++|.+++++.
T Consensus 426 ~~~-~~Gll~~~~-------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 426 AAL-ARGVVLRPL-------GDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred HHH-HCCeEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 554 679999863 1479999887 49999999999999999764
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=130.50 Aligned_cols=285 Identities=12% Similarity=0.086 Sum_probs=170.4
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCC-CCcEEEe-CChHHHHHHHHHHhcCCCCEEEEccCCCcC-hHHHHhhh-CCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFD-TSKIVLT-AGATSANETLMFCLAEPGEAFLLPTPYYPG-FDRDLKWR-TGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t-~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~-~~~~~~~~-~g~~~~~v 163 (469)
+.+.|+.++++++ ++ ..+|+++ +|+|.+++.++..++.+ +.+++..-.|.. +.+.+... .+.++..+
T Consensus 43 ~~~~r~~l~~l~~--------~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~ 113 (361)
T TIGR01366 43 VGRVREGLAELFS--------LPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIV 113 (361)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccCCceEE
Confidence 4667777888875 43 3478876 55999999999998743 333343333432 22233321 02255555
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+.+... .++. .+ .+++++|.+++-.|.||...|.+++ ++++|+++|+|.+.+ ++..+
T Consensus 114 ~~~~~~--~~~~-----~~------~~~~~lV~~~h~et~tG~~~pi~~I------~~~~g~~~iVDavqs---~g~~~- 170 (361)
T TIGR01366 114 TADPGS--APEP-----QA------DPGVDVIAWAHNETSTGVAVPVRRP------EGSDDALVVIDATSG---AGGLP- 170 (361)
T ss_pred ecCCCC--CCCC-----cc------CCCCCEEEEcccCCccceecccccc------cccCCCeEEEEcCcc---ccCCC-
Confidence 554311 2322 11 2389999999999999999997664 478999999999997 54433
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH---------h-------------ccc
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK---------M-------------SSF 301 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~---------~-------------~~~ 301 (469)
..+. +..+++.|..|.+|.+| .++.++.+++.+.+.... + ..+
T Consensus 171 idv~--------------~~D~~~~s~~K~lg~~~-Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~ 235 (361)
T TIGR01366 171 VDIA--------------ETDVYYFAPQKNFASDG-GLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTY 235 (361)
T ss_pred CCHH--------------HCCEEEEEchhhcCCCC-ceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCC
Confidence 2222 13467889999999774 255556655444221100 0 112
Q ss_pred ccCcHHHHHHHHHHhcCchhhHHH--HHHHHHHHHHHHHHHHHHHHhcC-Cceec-CC---ceEEEEEecccccccCChh
Q 043923 302 GLVSSQTQYLLSALLSDKKFTQNY--ISENKKRLKQRHRKLVSGLEKAG-ISCLK-SN---AGLFCWVDMRHLLRSNTFE 374 (469)
Q Consensus 302 ~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~g-~~v~~-~~---~g~~~~v~~~~~~~~~~~~ 374 (469)
++++.....++.++++.. .+. ++...++.++..+++.+.+.+.+ ++... .. ......+.+++..+
T Consensus 236 ~tp~i~~i~~l~~al~~l---~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~----- 307 (361)
T TIGR01366 236 NTPAIATLALLAEQIDWM---NGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDID----- 307 (361)
T ss_pred CCchHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccC-----
Confidence 223333222333333221 111 45566778888888999999886 44432 11 11112334433221
Q ss_pred HHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 375 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 375 ~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
..++...| +++||.+.++. +..+.+.+|+++.. .+++++++++++|+++++++
T Consensus 308 -~~~v~~~L-~~~gI~i~~~~--~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 308 -AATVAKIL-RANGIVDTEPY--RKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred -HHHHHHHH-HHCCCeeccCc--cccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 22344454 56799997764 22235689999977 59999999999999988763
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=137.54 Aligned_cols=350 Identities=13% Similarity=0.113 Sum_probs=188.3
Q ss_pred CCCeeeeeccccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 37 PTGIIQMGLAENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
...+||+..+...+. .+.+.+++.+.... ......|. .+....+|+.+.+... -..+.+
T Consensus 584 G~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~----------l~~~~~~~-----~~~~~elae~L~~~~p----~~~~~v 644 (972)
T PRK06149 584 GRSYLDMVNNVTVLGHGHPRLAAAAARQWSL----------LNTNSRFH-----YAAVAEFSERLAALAP----DGLDTV 644 (972)
T ss_pred CCEEEECCCCccccCCCCHHHHHHHHHHHHh----------cccccccc-----CHHHHHHHHHHHHhCC----CCcCEE
Confidence 456788876654454 46666666543111 01111121 2334444555443221 124689
Q ss_pred EEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHH-hhhC----CC--------EEEEeeccC--CCCccc-C--
Q 043923 115 VLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDL-KWRT----GV--------EIVPIQCTS--LNGFQI-T-- 174 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~-~~~~----g~--------~~~~v~~~~--~~~~~~-d-- 174 (469)
++++++++|+..+++... .....|+...-.|++....+ .... +. .+..++... ...|.. +
T Consensus 645 ~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~ 724 (972)
T PRK06149 645 FLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSA 724 (972)
T ss_pred EEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccH
Confidence 999999999999998431 22356777777777543221 1100 00 112222211 011211 1
Q ss_pred ---HHHHHHHHHHHHhcCCceeEEEEecCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhh
Q 043923 175 ---ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG-TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250 (469)
Q Consensus 175 ---~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~ 250 (469)
.+.++..++.....+.++.+||+..-....| ...+.+-++++.++|++||+++|.||++.++.-.+..+... +..
T Consensus 725 ~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~-e~~ 803 (972)
T PRK06149 725 ADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGF-EQQ 803 (972)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhh-hhc
Confidence 2445555543322233566655542233344 56788899999999999999999999997642222211111 111
Q ss_pred hccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh----cccccCcHHHHHHHHHHhcCchhhHHHH
Q 043923 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM----SSFGLVSSQTQYLLSALLSDKKFTQNYI 326 (469)
Q Consensus 251 ~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~----~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 326 (469)
+..+.++ +++|.+| .|+.+|++++. +.+.+.+... .++ ..++++..++.+.|+-..-
T Consensus 804 --------gv~PDiv---t~gK~lg-~G~Pl~av~~~-~~i~~~~~~~~~~~sT~-~gnP~~~aaala~L~~i~~----- 864 (972)
T PRK06149 804 --------GVVPDII---TMAKGMG-NGHPLGAVITR-REIAEALEAEGYFFSST-GGSPVSCRIGMAVLDVLRE----- 864 (972)
T ss_pred --------CCCCCEE---Eeccccc-CCeeeEEEEEc-HHHHhhhccCCcccCCC-CCCHHHHHHHHHHHHHHHh-----
Confidence 1223333 7899998 89999999994 4455544321 122 2566666666666542210
Q ss_pred HHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEeccccccc--CChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 327 SENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLRS--NTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~~--~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
+...+..++.-++|.+.|++ +++......-|+++.+++...... ........++..++ ++||.+.+...
T Consensus 865 e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~-~~Gvl~~~~g~---- 939 (972)
T PRK06149 865 EKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLL-ELGVIMQPTGD---- 939 (972)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHH-hCCeEEeecCC----
Confidence 11222233333344444443 333222223357877877421110 11122334555555 57999987421
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 401 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 401 ~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
..+.+|+.... ++++++++++++|.+++.+
T Consensus 940 ~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 940 HLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 24679988775 4999999999999999864
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-11 Score=123.92 Aligned_cols=292 Identities=15% Similarity=0.039 Sum_probs=162.2
Q ss_pred cEEEe-CChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCC--Ccc---
Q 043923 113 KIVLT-AGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLN--GFQ--- 172 (469)
Q Consensus 113 ~i~~t-~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~--~~~--- 172 (469)
.++++ +++++|+..+++... ....+|+...-+|++....+....|. .+..+|.+... .|.
T Consensus 128 ~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 207 (464)
T PRK06938 128 KIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGG 207 (464)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCch
Confidence 56564 799999999988753 23467888888887764332221111 12233322110 010
Q ss_pred -----cCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 173 -----ITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 173 -----~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
.+++.+++.+++......++.+|++. | ..-.|.+ .+.+-++++.++|++||+++|.||+..++.-.+.- ..
T Consensus 208 ~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~E-Piqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~-~a 285 (464)
T PRK06938 208 EAGVRANLHYLENLLDDPESGVVLPAAVILE-VVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKM-FA 285 (464)
T ss_pred hhHHHHHHHHHHHHHHhhccCCCceEEEEEc-cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHH-HH
Confidence 12456666664321111246665554 5 3344654 56999999999999999999999999874212211 11
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhH
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
.+.. +..+.++ +++|.+| .|+.+|.+++.+. + +.+... ...+..++++..++.+.|+...- .
T Consensus 286 -~e~~--------gv~PDiv---~~gKglg-gG~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~-~ 349 (464)
T PRK06938 286 -FEHA--------GIIPDVV---VLSKAIG-GSLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE-H 349 (464)
T ss_pred -HHhc--------CCCCCEE---Eeecccc-CCCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHH-h
Confidence 1111 1223444 5689998 8999999998543 3 322211 11122566776666666543211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcCCceecCCceEEEEEeccccccc------C--ChhHHHHHHHHHHHhCCeEE
Q 043923 324 NYISENKKRLKQRHRKLVSGLE----KAGISCLKSNAGLFCWVDMRHLLRS------N--TFEAEMELWKKIVYDVKLNI 391 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~----~~g~~v~~~~~g~~~~v~~~~~~~~------~--~~~~~~~l~~~ll~~~GI~v 391 (469)
...+..++.-++|.+.|+ ++++......-|+++.+.+...... . .......++..++ ++||.+
T Consensus 350 ----~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~ 424 (464)
T PRK06938 350 ----RLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLIL 424 (464)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEE
Confidence 112222222333333333 3343222233457777877432110 0 0011223445554 679999
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 392 SPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 392 ~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.++..+ .+.+|+.... +++++++++++++.+++.+.
T Consensus 425 ~~~g~~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 425 ELGGRH----GSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred eecCCC----CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 865322 3579998765 49999999999999998753
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=135.29 Aligned_cols=310 Identities=15% Similarity=0.121 Sum_probs=186.1
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE-eCChHHHHHHHHHHh----cCCCC----EEEEccCCCcChHHHHhhhC
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVL-TAGATSANETLMFCL----AEPGE----AFLLPTPYYPGFDRDLKWRT 156 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~-t~G~~~al~~~~~~l----~~~gd----~Vl~~~P~y~~~~~~~~~~~ 156 (469)
+|+.++...+.+++.+..| .+++.+ .+|++++....+.++ .++|+ +|+++...|......+...
T Consensus 538 qG~l~~i~e~q~~l~eltG------~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~- 610 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITG------YDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMA- 610 (954)
T ss_pred HHHHHHHHHHHHHHHHHHC------CCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHC-
Confidence 4577888888888888766 234444 456666654443333 24565 6999999998877778777
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|++++.++++.+ ..+|+++|++++++. ..++.+|++++|++-.+...+ +++|+++|+++|+++++|.++...
T Consensus 611 G~~vv~v~~d~~--G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~a 682 (954)
T PRK05367 611 GMKVVVVACDEN--GNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNA 682 (954)
T ss_pred CCEEEEECCCCC--CCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhh
Confidence 999999998753 468999999988641 125778889988875333445 666899999999999999999632
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC----CCcceEEEEEecCHHHHHHHHHh-------c-ccccC
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG----LPGFRVGAIYSNDDMVVAAATKM-------S-SFGLV 304 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g----~~GlRiG~li~~~~~~~~~~~~~-------~-~~~~~ 304 (469)
... +.... ..+-.++..|++|+|+ ..|-.+|++.+.+ .+...+... . ..+.+
T Consensus 683 l~~---l~~pg------------~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~-~l~p~lpg~~v~~~~~~~~~g~v 746 (954)
T PRK05367 683 QVG---LARPG------------DIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA-HLAPFLPGHPVQIAGGETGIGAV 746 (954)
T ss_pred ccC---CCChh------------hcCCCEEEecCcccCCCCcCCCCCceEEEeecc-cccccCCCCccCcCCCCCCcCcc
Confidence 111 11111 2245677889999975 3445578887743 222111100 0 01112
Q ss_pred c--HHHHHH----HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceE--EEEEecccccccCChhH
Q 043923 305 S--SQTQYL----LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGL--FCWVDMRHLLRSNTFEA 375 (469)
Q Consensus 305 s--~~~q~~----~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~--~~~v~~~~~~~~~~~~~ 375 (469)
+ ...+.. +..++... ..+-+++..+..-.+.+++.+.|++. .+.+..+.+-+ =+.++++....... ..
T Consensus 747 ~ta~~g~al~~~~a~~yi~~~--G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g-~~ 823 (954)
T PRK05367 747 SAAPFGSASILPISWMYIRMM--GAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTG-IT 823 (954)
T ss_pred hhHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCC-CC
Confidence 2 221111 11122211 13334444454456778888888764 33332221100 02233321111001 12
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 376 EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 376 ~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..++.++| .++|+.... ..|. .++.+||+++. .+++++++++++|+.+.++.++
T Consensus 824 ~~di~krL-~d~G~~~~t-~~~p--v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 824 VDDIAKRL-IDYGFHAPT-MSFP--VAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred HHHHHHHH-HHCCCeEee-cCCc--cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 23566776 577998764 2343 36779998876 3899999999999998877766
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=135.99 Aligned_cols=173 Identities=15% Similarity=0.184 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH-HhhhCCCEEEEeecc
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD-LKWRTGVEIVPIQCT 166 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~-~~~~~g~~~~~v~~~ 166 (469)
+.+..+.+|+.|+ .....+++||+|.++.+++.+++.+||.|+++..+|-+..+. +.+. |++++.+.-.
T Consensus 176 i~eAq~~AA~~fg---------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLs-Ga~PVYl~P~ 245 (720)
T PRK13578 176 AKDAQKHAAKVFN---------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQA-GATPVYLETA 245 (720)
T ss_pred HHHHHHHHHHHhC---------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHc-CCeEEEeecc
Confidence 4566666777665 345688999999999999999999999999999999998885 6666 9999998754
Q ss_pred CCCCcc----cCH-----HHHHHHHHHH-Hh--cC-CceeEEEEecCCCCCCCCCCHHHHHHHHHH-HHhcCeEEEEecc
Q 043923 167 SLNGFQ----ITE-----TAIEEAYQLA-QK--RH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNI-ITEKNIHLISDEI 232 (469)
Q Consensus 167 ~~~~~~----~d~-----~~l~~~i~~~-~~--~~-~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~-~~~~~~~iI~Dea 232 (469)
. +.|. ++. +.++++|.+. +. .. ...+++++++|+. .|.+++.++ |+++ ++.++ .|++|||
T Consensus 246 ~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~---I~~~~~h~~~-~llvDEA 319 (720)
T PRK13578 246 R-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQ---VVDKIGHLCD-YILFDSA 319 (720)
T ss_pred c-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHH---HHHHhhccCC-cEEEeCc
Confidence 3 2233 344 4488887654 11 01 1258999998876 899998555 7776 56777 9999999
Q ss_pred ccccc-cCCC--Cccch-hhhhhccccccCCcCCeEEEEccCccccCCCcceEE-EEEe
Q 043923 233 YSGTV-FSSP--GFVSI-MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG-AIYS 286 (469)
Q Consensus 233 y~~~~-~~~~--~~~s~-~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG-~li~ 286 (469)
|..+. |... .++.+ .++- +| .+.++++.|.+|.+ +++--+ +|..
T Consensus 320 hgah~~F~p~~~~~p~~al~~G-------aD-~p~i~v~QStHKtL--~alTQaS~LHv 368 (720)
T PRK13578 320 WVGYEQFIPMMADCSPLLLELN-------EN-DPGIFVTQSVHKQQ--AGFSQTSQIHK 368 (720)
T ss_pred chhhhccCcccccCChhhhhcC-------CC-CCCeEEEEChhhcc--hhhhhHhhhhc
Confidence 97652 3221 11111 1221 12 34578899999998 454444 4444
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-11 Score=124.52 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-------C-CCEEEEccCCCcChHHHHhhhCCC----
Q 043923 91 FKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-------P-GEAFLLPTPYYPGFDRDLKWRTGV---- 158 (469)
Q Consensus 91 Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------~-gd~Vl~~~P~y~~~~~~~~~~~g~---- 158 (469)
....+|+.+.+... ...+.+++++++++|+..+++.... + ...|+....+|++....+....|.
T Consensus 100 ~~~~lae~L~~~~p----~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~ 175 (460)
T PRK06916 100 PSILLAEKLIEVVP----EGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFH 175 (460)
T ss_pred HHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccc
Confidence 33455555543321 1236899999999999999887532 3 367888888887754332221121
Q ss_pred --------EEEEeeccCCC--Ccc--------cCHHHHHHHHHHHHhcCCceeEEEEec-CCCCCCCC-CCHHHHHHHHH
Q 043923 159 --------EIVPIQCTSLN--GFQ--------ITETAIEEAYQLAQKRHLKVKGVLVTN-PSNPLGTT-MSRNELNLLVN 218 (469)
Q Consensus 159 --------~~~~v~~~~~~--~~~--------~d~~~l~~~i~~~~~~~~~~~~vvl~~-P~NPtG~~-~s~e~l~~l~~ 218 (469)
.+..+|..... .+. -+++.+++.++. .+.++.+|++.- ...-.|.. .+.+-+++|.+
T Consensus 176 ~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~ 252 (460)
T PRK06916 176 QVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRN 252 (460)
T ss_pred cccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHH
Confidence 12222221000 011 123455555542 223677766663 25556764 68999999999
Q ss_pred HHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH
Q 043923 219 IITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 219 ~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~ 297 (469)
+|++||+++|.||++.++.-.+.. .. .+... ..+.++ +++|.+| .| +.+|.+++.++ +.+.+..
T Consensus 253 lc~~~g~llI~DEV~TG~GRtG~~-~a-~~~~g--------v~PDiv---~~gK~l~-gG~~Pi~av~~~~e-i~~~~~~ 317 (460)
T PRK06916 253 LCTKYNVLFITDEVATGFGRTGKM-FA-CEHEN--------VTPDIM---TAGKGLT-GGYLPIAITVTTDE-IYNAFYG 317 (460)
T ss_pred HHHHcCCEEEeechhhCCCcCchh-hH-HHhcC--------CCCCee---eeehhhh-cCccccceeeecHH-HHHHhhc
Confidence 999999999999999874212221 11 11111 223333 6799998 88 59999999544 4443321
Q ss_pred --------hcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---CCceecCCceEEEEEecc
Q 043923 298 --------MSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA---GISCLKSNAGLFCWVDMR 365 (469)
Q Consensus 298 --------~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---g~~v~~~~~g~~~~v~~~ 365 (469)
... ....++++..++.+.|+...- +...+..++.-+++.+.|+++ ..-.....-|+++-+.+.
T Consensus 318 ~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~ 392 (460)
T PRK06916 318 DYEEQKTFFHGHSYTGNPLGCAVALANLELYEK-----TNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELV 392 (460)
T ss_pred cccccCccccCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEee
Confidence 111 112466666666665542210 112233344444455555443 211112223566667664
Q ss_pred cccccC-C----hhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 366 HLLRSN-T----FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 366 ~~~~~~-~----~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
...... . ......++..++ ++||++.|.. +.+|+..+. ++++++++++++|.+++++..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g-------~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 393 KNKETKEPFEWTERVGVQVCKRSR-ELGMLTRPLG-------NTIVFMPPLASTIDELDEMLRILYKAISDVTE 458 (460)
T ss_pred cccccccCCCchhhHHHHHHHHHH-HCCeEEEecC-------CEEEEeCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence 321110 0 011124445544 6799998631 368888665 5999999999999999986543
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-11 Score=137.87 Aligned_cols=352 Identities=11% Similarity=0.060 Sum_probs=192.7
Q ss_pred CCCCeeeeeccccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 36 NPTGIIQMGLAENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
....+||+..+...+. .+.+.+++++..+. ......|. .+....+|+.+..... -..+.
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~----------l~~~~~~~-----~~~~~~lAe~L~~~~p----~~~~~ 682 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAAR----------LNTNTRYL-----HDAIVAYAERLTATLP----DGLTV 682 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhh----------cCCcCCcC-----CHHHHHHHHHHHHhCC----CCcCE
Confidence 3456889877765554 46677776663211 11111222 2344455555543321 12367
Q ss_pred EEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCC--------------CEEEEeeccCCCCccc-C--
Q 043923 114 IVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTG--------------VEIVPIQCTSLNGFQI-T-- 174 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g--------------~~~~~v~~~~~~~~~~-d-- 174 (469)
++++++++||+..+++... .....|+....+|++....+....+ ...++.|......|.. +
T Consensus 683 v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 762 (1013)
T PRK06148 683 AFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAE 762 (1013)
T ss_pred EEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhh
Confidence 9999999999999988753 2345788888888776432211101 1111111000011211 1
Q ss_pred -----HHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 175 -----ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 175 -----~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
.+.+++.++.....+.++.+||+..-..-.|. ..+.+-++++.++|++||+++|.||+..++.-.+...... +
T Consensus 763 ~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~-e 841 (1013)
T PRK06148 763 HGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAF-E 841 (1013)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhh-h
Confidence 13455555432222335666555533333454 5688899999999999999999999998742222211111 1
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh----cccccCcHHHHHHHHHHhcCchhhHH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM----SSFGLVSSQTQYLLSALLSDKKFTQN 324 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~----~~~~~~s~~~q~~~~~~l~~~~~~~~ 324 (469)
... ..+.++ +++|.+| .|+.+|.+++. +.+.+.+... .+++ .++++..++.+.|+-..-
T Consensus 842 ~~g--------v~PDiv---t~gK~lg-gG~Plgav~~~-~ei~~~~~~g~~~~~Tf~-gnpla~aaa~a~L~~i~~--- 904 (1013)
T PRK06148 842 TQG--------VVPDIV---TMGKPIG-NGHPMGAVVTT-REIADSFDNGMEYFNTFG-GNPVSCAIGLAVLDIIED--- 904 (1013)
T ss_pred hcC--------CCccee---eeccccc-CCcceEEEEEc-HHHHhhccCCCccccCCC-CCHHHHHHHHHHHHHHhh---
Confidence 111 223333 6799998 89999999994 5555544321 2222 566666666665542210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEecccccccC--ChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 325 YISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLRSN--TFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~~~~~~--~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
+...+..++.-++|.+.|++ +++......-|+++.+.+....... .......++..++ ++||.+.+...
T Consensus 905 --e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g~-- 979 (1013)
T PRK06148 905 --EDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIGTEGP-- 979 (1013)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEeccCC--
Confidence 11222233333444444433 3332222233578778775321111 1112234455554 67999986422
Q ss_pred CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 399 CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 399 ~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
..+.+|+.... ++++++++++++|.+++.+.
T Consensus 980 --~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 980 --HDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred --CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 14679998876 49999999999999999754
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-11 Score=126.28 Aligned_cols=354 Identities=10% Similarity=0.026 Sum_probs=189.2
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ ...+. .|.+.+++++.... ......+.. ...+.+..+|+.+.+... -..
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----------~~~~~~~~~--~~~~~~~~lae~L~~~~p----~~~ 112 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARR----------LPYYTPFGD--MTNAPAAELAAKLAELAP----GDL 112 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHh----------Ccccccccc--cCCHHHHHHHHHHHHhCC----CCc
Confidence 34457888665 23343 46666666653111 000111110 113445666666654322 124
Q ss_pred CcEEEeCChHHHHHHHHHHhc------C-C-CCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCC--C
Q 043923 112 SKIVLTAGATSANETLMFCLA------E-P-GEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSL--N 169 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~------~-~-gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~--~ 169 (469)
+.+++++++++|+..+++... . + ..+|+...-+|++....+....|. .+..+|.... .
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (466)
T PRK07036 113 NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRR 192 (466)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccccc
Confidence 689999999999999988742 1 2 257888888887754332211121 1222222110 0
Q ss_pred CcccC--------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 170 GFQIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 170 ~~~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
.+..+ ++.+++.+.. ....++.+|++.......|. ..+.+-+++|.++|++||+++|.||+..++.-.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG 270 (466)
T PRK07036 193 PAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG 270 (466)
T ss_pred ccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc
Confidence 01111 1233333321 11235666666543555566 4578889999999999999999999998742112
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh--------c-ccccCcHHHHH
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM--------S-SFGLVSSQTQY 310 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~--------~-~~~~~s~~~q~ 310 (469)
.- ........ ..+.++ +++|.+| .| +.+|.+++++ .+.+.+... . ..+..++++..
T Consensus 271 ~~-~~~~~~~g--------v~PDiv---t~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~gnpl~~a 336 (466)
T PRK07036 271 HF-FASEAVFG--------IQPDII---TFAKGLT-SGYQPLGAVIISE-RLLDVISGPNAKGNVFTHGFTYSGHPVACA 336 (466)
T ss_pred hh-hhhhhhcC--------CCCCEE---EEccccc-cCccccEEEEEcH-HHHHHHhcccCcCcccccCCCCCCCHHHHH
Confidence 11 11110111 123333 6799998 88 5999999954 444444311 1 11224666666
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh---cCCceecCCceEEEEEecccccccC-C----hhHHHHHHHH
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGLFCWVDMRHLLRSN-T----FEAEMELWKK 382 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~g~~v~~~~~g~~~~v~~~~~~~~~-~----~~~~~~l~~~ 382 (469)
++.+.|+...- ....+..++.-++|.+.|++ +++......-|.++.+.+....... . ......+...
T Consensus 337 aa~a~Le~i~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~ 411 (466)
T PRK07036 337 AALKNIEIMER-----EGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRH 411 (466)
T ss_pred HHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHH
Confidence 66665542210 11222233333334444433 3332222234577778774321111 0 0112234444
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
+ .++||.+.+.. +.+|++... ++++++++++++|.+++++..+.
T Consensus 412 ~-~~~Gvl~~~~~-------~~~~l~Ppl~it~~~id~~~~~l~~al~~~~~~ 456 (466)
T PRK07036 412 C-QERGLLVRPLE-------HLCVLSPPLIITRAQIDEIVAILRAAIEETADE 456 (466)
T ss_pred H-HHCCcEEeecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46799997631 358888765 49999999999999999877553
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-12 Score=127.73 Aligned_cols=311 Identities=14% Similarity=0.122 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CEEEEccCCCcChHHHHhhhCCCE--
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-------PG-EAFLLPTPYYPGFDRDLKWRTGVE-- 159 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------~g-d~Vl~~~P~y~~~~~~~~~~~g~~-- 159 (469)
+.+..+|+.+.+... ...+.+++++++++|+..+++.... +| .+|+...-+|++.........|..
T Consensus 94 ~~~~~lae~L~~~~p----~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~ 169 (456)
T PRK07480 94 PPAIELAAKLAEVAP----PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYM 169 (456)
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhh
Confidence 445556666554322 2346899999999999999876521 23 468887877777532221111211
Q ss_pred ----------EEEeeccC--CCCcccC--------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHH
Q 043923 160 ----------IVPIQCTS--LNGFQIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVN 218 (469)
Q Consensus 160 ----------~~~v~~~~--~~~~~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~ 218 (469)
+..++.+. ...+..+ .+.+++.+.+ ....++.+|++.....-.|.. .+.+-+++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~ 247 (456)
T PRK07480 170 HEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILE--LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQR 247 (456)
T ss_pred hcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHh--cCCCcEEEEEEccccCCCCCccCCHHHHHHHHH
Confidence 11121110 0000011 1344433321 112366666665334445664 57778999999
Q ss_pred HHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHH-
Q 043923 219 IITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAAT- 296 (469)
Q Consensus 219 ~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~- 296 (469)
+|++||+++|.||++.++.-.+..+ . .+... ..+.++ +++|.+| .|+ .+|.+++.+ .+.+.+.
T Consensus 248 lc~~~g~llI~DEV~tGfGRtG~~~-a-~~~~g--------v~PDiv---~~gK~l~-gG~~Pi~av~~~~-~i~~~~~~ 312 (456)
T PRK07480 248 ICRKYDILLVADEVICGFGRTGEWF-G-SQHFG--------IKPDLM---TIAKGLT-SGYIPMGAVGVGD-RVAEVLIE 312 (456)
T ss_pred HHHHcCCEEEEechhhCCCcCcchh-h-hhhcC--------CCCCee---eeehhhc-cCCccceEEEEcH-HHHHHHhc
Confidence 9999999999999998742122211 1 11111 223333 6799998 784 899999954 4544442
Q ss_pred H---h--cccccCcHHHHHHHHHHhcC---chhhHHHH-HHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccc
Q 043923 297 K---M--SSFGLVSSQTQYLLSALLSD---KKFTQNYI-SENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 367 (469)
Q Consensus 297 ~---~--~~~~~~s~~~q~~~~~~l~~---~~~~~~~~-~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~ 367 (469)
. . ...+..++++..++.+.|+- .+. .+.. +.+-+++. +.|.+ +.++++......-|+++.+.+...
T Consensus 313 ~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l-~~~~~~~~g~~l~---~~l~~-l~~~~~i~~vrG~Glm~gie~~~~ 387 (456)
T PRK07480 313 EGGEFNHGFTYSGHPVAAAVALANLRILRDEGI-VERVRDDTGPYLQ---KRLRE-LADHPLVGEVRGVGLVGAIELVKD 387 (456)
T ss_pred CCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHH---HHHHH-hhcCCCeeeEEeecceEEEEEecc
Confidence 1 1 11123567777776666643 222 1222 12222222 22222 333343211222357777777421
Q ss_pred ccc-CCh---hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 368 LRS-NTF---EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 368 ~~~-~~~---~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
... ... ......+...+.++||.+.+. .+.+|++... ++++++++++++|.+++++..+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 388 KATRERFEAGGGVGTICRDHCFANGLIMRAV-------GDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred ccccccCcchhhHHHHHHHHHHHCCcEEeec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 110 000 011122333344679999752 1469999886 4999999999999999987655
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-11 Score=124.21 Aligned_cols=307 Identities=16% Similarity=0.097 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc------C-C-CCEEEEccCCCcChHHHHhhhCCC---
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA------E-P-GEAFLLPTPYYPGFDRDLKWRTGV--- 158 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~------~-~-gd~Vl~~~P~y~~~~~~~~~~~g~--- 158 (469)
+.+..+|+.+.+... ...+.+++++++++|.+.+++... . + ..+|+...-+|++....+....|.
T Consensus 90 ~~~~~lae~L~~~~p----~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~ 165 (466)
T PRK07030 90 EPVIELSERLVKITP----PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALF 165 (466)
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccc
Confidence 444556666554321 134689999999999999988752 1 2 357888888887764332221121
Q ss_pred ---------EEEEeeccCCC--Cccc--------CHHHHHHHHHHHHhcCCceeEEEEec-CCCCCCC-CCCHHHHHHHH
Q 043923 159 ---------EIVPIQCTSLN--GFQI--------TETAIEEAYQLAQKRHLKVKGVLVTN-PSNPLGT-TMSRNELNLLV 217 (469)
Q Consensus 159 ---------~~~~v~~~~~~--~~~~--------d~~~l~~~i~~~~~~~~~~~~vvl~~-P~NPtG~-~~s~e~l~~l~ 217 (469)
.+..+|..... .+.. +++.+++.+.. ...++.+|++.- ...-.|. ..+.+-+++|.
T Consensus 166 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr 242 (466)
T PRK07030 166 TETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLR 242 (466)
T ss_pred cccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHHHHHHHH
Confidence 12223221100 0011 23445555542 233677766653 2444565 56778999999
Q ss_pred HHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHH
Q 043923 218 NIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAAT 296 (469)
Q Consensus 218 ~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~ 296 (469)
++|++||+++|.||+..++.-.+.-+ . .+... ..+.++ +++|.+| .| +.+|.+++++ .+.+.+.
T Consensus 243 ~lc~~~g~llI~DEV~TGfGRtG~~~-a-~~~~g--------v~PDiv---~~gKgl~-gG~~Pi~av~~~~-ei~~~~~ 307 (466)
T PRK07030 243 EACDRYGVHLIHDEIAVGFGRTGTMF-A-CEQAG--------IRPDFL---CLSKALT-GGYLPLAAVLTTD-TVYQAFY 307 (466)
T ss_pred HHHHHcCCEEEEeehhhCcCccccch-H-HHhcC--------CCCCEE---eeehhcc-CCcccceEEEecH-HHHHHHh
Confidence 99999999999999998742222211 1 11111 223444 5689998 89 5999999954 4444432
Q ss_pred H--------h-cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---CCceecCCceEEEEEec
Q 043923 297 K--------M-SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA---GISCLKSNAGLFCWVDM 364 (469)
Q Consensus 297 ~--------~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---g~~v~~~~~g~~~~v~~ 364 (469)
. . ...+..++++..++.+.|+-..- +...++.++.-++|.+.|+++ ..-.....-|+++.+.+
T Consensus 308 ~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~-----~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~ 382 (466)
T PRK07030 308 DDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ-----DNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEM 382 (466)
T ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEe
Confidence 1 1 11122466776666666543211 111222233333444444332 22111123457777877
Q ss_pred ccccccC-----ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 365 RHLLRSN-----TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 365 ~~~~~~~-----~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
....... .......+...++ ++||.+.+. .+.+|+.... ++++++++++++|.+++++.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~-------g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 383 VQDKASKTPYPWQERRGLKVYQHAL-ERGALLRPL-------GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred ccCccccccCcchhHHHHHHHHHHH-HCCeEEEec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 4311100 0011124455554 679999763 1368998765 59999999999999999887
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-12 Score=126.79 Aligned_cols=281 Identities=19% Similarity=0.141 Sum_probs=162.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------C-CCEEEEccCCCcChHHHHhhhCCCE-------------EEEeeccCCC
Q 043923 111 TSKIVLTAGATSANETLMFCLAE-------P-GEAFLLPTPYYPGFDRDLKWRTGVE-------------IVPIQCTSLN 169 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~-------~-gd~Vl~~~P~y~~~~~~~~~~~g~~-------------~~~v~~~~~~ 169 (469)
-+.+++++++++|+..++..... + ...|+...-+|.+....+....+.. +..++... .
T Consensus 105 ~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 183 (427)
T TIGR00508 105 LDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQ-N 183 (427)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCC-c
Confidence 36899999999999988876431 2 2578888888877543322111211 11111110 1
Q ss_pred Ccc-----cCHHHHHHHHHHHHhcCCceeEEEEecC--CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 170 GFQ-----ITETAIEEAYQLAQKRHLKVKGVLVTNP--SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 170 ~~~-----~d~~~l~~~i~~~~~~~~~~~~vvl~~P--~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.+. -|++++++.+... ..++.+|++. | +.-.|. ..+.+.+++|.++|++||+++|+||++.++...+.
T Consensus 184 ~~~~~~~~~~~~~l~~~l~~~---~~~vaavivE-Pv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~ 259 (427)
T TIGR00508 184 RFDEEWNEEAITPLAKLMELH---SDEIAAVILE-PIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK 259 (427)
T ss_pred cccchhHHHHHHHHHHHHHhc---CCcEEEEEEe-chhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc
Confidence 111 1345666666431 2356555555 5 454555 55899999999999999999999999976422232
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcc-eEEEEEecCHHHHHHHHHh-------cccccCcHHHHHHHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKM-------SSFGLVSSQTQYLLS 313 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~~-------~~~~~~s~~~q~~~~ 313 (469)
.+.. +... ..+. ++ +++|+++ .|+ .++.+++. +.+.+.+... ...+..++++..++.
T Consensus 260 ~~~~--~~~~--------v~pD-i~--~~gK~l~-gG~~p~~a~~~~-~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~ 324 (427)
T TIGR00508 260 LFAC--EHAG--------VVPD-IL--CVGKALT-GGYMTLSATVTT-DKVAQTISSGEAGCFMHGPTFMGNPLACAVAE 324 (427)
T ss_pred cchh--hhcC--------CCCC-EE--Eechhhh-cCcccceEEEEc-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHH
Confidence 2111 1111 1122 33 4799997 885 77888874 4454444321 111124566666666
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceecC--CceEEEEEecccccccCChhHHHHHHHHHHHhCCeE
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI-SCLKS--NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~-~v~~~--~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~ 390 (469)
+.|+... + ....++++++-++|.+.|++++. ..... .-|.++.+.+... .....+...++ ++||.
T Consensus 325 a~l~~l~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~-~~Gv~ 392 (427)
T TIGR00508 325 ASLAILL---E--GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKP------VNVEELQKKFV-EQGVW 392 (427)
T ss_pred HHHHHHH---h--CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCc------cCHHHHHHHHH-HCCeE
Confidence 6654211 0 11234455555666666665532 11111 1256666776421 11224555555 66999
Q ss_pred EeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 391 ISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+.+.. ..+|++... ++++++++++++|++++.+
T Consensus 393 ~~~~~-------~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 393 IRPFG-------KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred EEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 97532 368998875 4999999999999999865
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-11 Score=120.83 Aligned_cols=356 Identities=12% Similarity=0.034 Sum_probs=188.0
Q ss_pred CCCeeeeecc--cccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-
Q 043923 37 PTGIIQMGLA--ENQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT- 111 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~- 111 (469)
...+||+..+ ...+ ..|.+.+++++.... ....+... -..+.+..+|+.+.+.... ...
T Consensus 57 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~------------~~~~~~~~-~~~~~~~~lAe~L~~~~p~---~~~~ 120 (459)
T PRK06931 57 GNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTS------------GLPLHTLD-LTTPLKDAFSEYLLSLLPG---QGKE 120 (459)
T ss_pred CCEEEEcccchhhccCCCCCHHHHHHHHHHHhh------------hccccccc-cCCHHHHHHHHHHHHhCCC---cccc
Confidence 3457888766 3333 346666666653110 00001100 1235556667666543210 011
Q ss_pred -CcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCC--Ccc--
Q 043923 112 -SKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLN--GFQ-- 172 (469)
Q Consensus 112 -~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~--~~~-- 172 (469)
..+++++++++|+..+++... ...+.|+...-.|++....+....|. .+..+|.+... .|.
T Consensus 121 ~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (459)
T PRK06931 121 YCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIG 200 (459)
T ss_pred ceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 134566899999999888742 23467888888887765443311111 12223322100 011
Q ss_pred --cCHHHHHHHHHHHHh----cCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 173 --ITETAIEEAYQLAQK----RHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 173 --~d~~~l~~~i~~~~~----~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
-+.+.++..+++... ...++.+||+.--..-.|. ..+.+-++++.++|++||+++|.||+..++.-.+.. ..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~-~a 279 (459)
T PRK06931 201 GEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKM-FA 279 (459)
T ss_pred chhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchH-HH
Confidence 123333333332211 1234666555432444465 467889999999999999999999999874222211 11
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhc---Cch
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLS---DKK 320 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~---~~~ 320 (469)
.+.. +..+.++ +++|.+| .|+.+|.+++. +.+ +.+... ...+..++++..++.+.|+ +.+
T Consensus 280 -~~~~--------gv~PDiv---t~gK~l~-gG~Pi~av~~~-~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~ 344 (459)
T PRK06931 280 -FEHA--------GIEPDII---VMSKAVG-GGLPLAVLGIK-KEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEEN 344 (459)
T ss_pred -hhhc--------CCCCCEE---Eeccccc-CCcceeeeeeH-HHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 1111 1223344 5799998 89999988874 333 333211 1112256677666666654 222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc------C--ChhHHHHHHHHHHHhCCeEEe
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS------N--TFEAEMELWKKIVYDVKLNIS 392 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~------~--~~~~~~~l~~~ll~~~GI~v~ 392 (469)
. .++.++.-+++.+. |.+..+++++......-|+++.+.+...... . .......+...++ ++||.+.
T Consensus 345 l-~~~~~~~G~~l~~~---L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~ 419 (459)
T PRK06931 345 L-AQNAAERGEWLKAQ---LAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-ENGLLLE 419 (459)
T ss_pred H-HHHHHHHHHHHHHH---HHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-HCCcEEe
Confidence 2 22333333333222 3332233443222223467777777432110 0 1111223444444 6799998
Q ss_pred CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 393 PGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 393 pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++... .+.+|+..+. ++++++++++++|.+++++.-|
T Consensus 420 ~~~~~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 420 RGGRN----GNVVRLLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred ecCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 65321 3579988876 4999999999999999987544
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-12 Score=127.99 Aligned_cols=251 Identities=16% Similarity=0.160 Sum_probs=174.9
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-----C---C------CEEEEccCCCcChHHHH
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-----P---G------EAFLLPTPYYPGFDRDL 152 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-----~---g------d~Vl~~~P~y~~~~~~~ 152 (469)
+..++.+.+..++.+-++.. ..-.=.+|+|+|+++..++.+... . + ..|+++.-.|.++..++
T Consensus 98 ~a~~~E~~~v~~l~~l~~~~---~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa 174 (460)
T COG0076 98 AAAELEERVVNMLSDLLGAP---EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA 174 (460)
T ss_pred hHHHHHHHHHHHHHHHhCCC---CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHH
Confidence 56899999999999887732 334567999999999987766421 1 1 16899999999999999
Q ss_pred hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee--EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEe
Q 043923 153 KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK--GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISD 230 (469)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~--~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~D 230 (469)
... |++...++.+.. ++.+|++++++++++. +. +|+.+-++-+||.+=+ +++|.++|+++++++++|
T Consensus 175 ~~l-G~~~~~v~~~~~-~~~id~~~l~~~i~~~------t~~g~vV~~aGtT~~G~iDd---i~~ia~ia~~~~i~lHVD 243 (460)
T COG0076 175 RYL-GLGLRRVPTVPT-DYRIDVDALEEAIDEN------TIGGVVVGTAGTTDTGSIDD---IEELADIAEEYGIWLHVD 243 (460)
T ss_pred HHh-CCCceeEEeccC-ccccCHHHHHHHHHhh------ccCceEEEEecCCCCCccCC---HHHHHHHHHHcCCcEEEE
Confidence 988 999999998864 7899999999999873 32 3677777889998855 666899999999999999
Q ss_pred ccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCH-HHHHHHHHhccccc------
Q 043923 231 EIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD-MVVAAATKMSSFGL------ 303 (469)
Q Consensus 231 eay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~-~~~~~~~~~~~~~~------ 303 (469)
.||++++..-......... +.....-+.-+++|.. +.-..+||++..++ .+.........++.
T Consensus 244 AA~GG~~~pf~~~~~~~~f---------~l~~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~ 313 (460)
T COG0076 244 AAFGGFLLPFLEPDGRWDF---------GLEGVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPN 313 (460)
T ss_pred ccccceeecccCccchhhc---------CCCCceEEEECccccc-CCCCCceEEEEECHHHhhhhhhcccccCCCCCcCc
Confidence 9999875321111111111 0223344456999965 58899999999877 45444332111111
Q ss_pred ----Cc-----HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CceecCCceEEEEEeccc
Q 043923 304 ----VS-----SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRH 366 (469)
Q Consensus 304 ----~s-----~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~ 366 (469)
.+ .+.+++....+. .+-..+..++..+..+++.+.|++.+ +++..+...+.+.+++++
T Consensus 314 ~ti~~sr~~~~~~~~~~~l~~lG-----~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 314 FTILGSRPGRQALALYANLRRLG-----REGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred eeEeeccchHHHHHHHHHHHHhC-----HhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 11 122333333332 23346667777788899999999986 887765566788888864
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-12 Score=133.18 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS 167 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (469)
+.+..+.+|+.++ .....+++||+|.++.+++.+++.+||.|+++..+|-+..+++.+. |+.++.++...
T Consensus 197 i~eAe~~AA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLils-ga~PVYl~P~r 266 (714)
T PRK15400 197 HKEAEEYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMS-DVTPIYFRPTR 266 (714)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeEEEecccc
Confidence 4566666777665 3456789999999999999999999999999999999999888877 99999987543
Q ss_pred CCCcc----cC-----HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-
Q 043923 168 LNGFQ----IT-----ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV- 237 (469)
Q Consensus 168 ~~~~~----~d-----~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~- 237 (469)
+.|. ++ .+.++++|.+.+. ..++..+++++|+. .|.+++.++ |++.|+.++ |++||||..+.
T Consensus 267 -n~~Gi~g~I~~~~~~~e~i~~~i~~~p~-ak~p~~~vit~pTY-dG~~yd~~~---I~~~~~~~~--ilvDEAwgah~~ 338 (714)
T PRK15400 267 -NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNSTY-DGLLYNTDF---IKKTLDVKS--IHFDSAWVPYTN 338 (714)
T ss_pred -cccCCccCCCccccCHHHHHHHHHhCcc-ccCccEEEEECCCC-ccEecCHHH---HHHHhCCCC--EEEEccchhhhc
Confidence 2332 24 7888888875331 12334789998854 899998655 677777776 78999998652
Q ss_pred cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEE
Q 043923 238 FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGA 283 (469)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~ 283 (469)
|... +.....+.. +++..+.++++.|.+|.+ +|+.-+.
T Consensus 339 F~p~-~~~~sam~~-----ga~~~~~i~vtQStHKtL--~alTQaS 376 (714)
T PRK15400 339 FSPI-YEGKCGMSG-----GRVEGKVIYETQSTHKLL--AAFSQAS 376 (714)
T ss_pred cCcc-cCCcChhhc-----CCCCCCceEEEEchhhcc--cchhHHh
Confidence 3221 111111111 011225568899999997 4544443
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-11 Score=130.82 Aligned_cols=320 Identities=14% Similarity=0.164 Sum_probs=191.2
Q ss_pred ccccccCCC---CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----C---C-CCEEEEccCC
Q 043923 76 FRELALFQD---YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----E---P-GEAFLLPTPY 144 (469)
Q Consensus 76 ~~~~~~Y~~---~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~---~-gd~Vl~~~P~ 144 (469)
+...+-|.| .+|+.++...+..++.+..|. +.-.+... ++.++..+.+.++. . + .++|+++.-.
T Consensus 526 F~t~hPyqp~e~sQG~lq~i~elq~~l~eLtGm----d~~Sl~p~-sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~sa 600 (954)
T PRK12566 526 FAQLHPFAPREQAEGYRAMIDELEAWLCAITGF----DAICMQPN-SGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSA 600 (954)
T ss_pred hhcCCCCCchhhhcCHHHHHHHHHHHHHHHHCC----CeEeecCC-chHHHHHHHHHHHHHHHHhcCCCCCCEEEecccc
Confidence 344455777 689999999999888887762 22233333 44444444444432 2 2 3577888877
Q ss_pred CcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC
Q 043923 145 YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN 224 (469)
Q Consensus 145 y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~ 224 (469)
|......+... |++++.+++++++ .+|+++|++.+++. ..++.+|.+++|++-++. .+++++|+++|+++|
T Consensus 601 HgtNpasa~~~-GieVv~Vp~D~~G--~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~G 671 (954)
T PRK12566 601 HGTNPASAQMA-GMRVVIVECDPDG--NVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVY---EEGIREICEVVHQHG 671 (954)
T ss_pred cccCHHHHHHC-CCEEEEeccCCCC--CcCHHHHHHHhhcc---CCCEEEEEEEecCcCcee---cchHHHHHHHHHHcC
Confidence 75545556666 9999999998533 69999999998732 237788888888864433 356888999999999
Q ss_pred eEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC----CcceEEEEEecCHHHHHHHHHhc-
Q 043923 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL----PGFRVGAIYSNDDMVVAAATKMS- 299 (469)
Q Consensus 225 ~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~----~GlRiG~li~~~~~~~~~~~~~~- 299 (469)
+++++|.++.. ......... ..+..++.++++|+|+. .|.-+|.+.+. +.+...+....
T Consensus 672 alv~vDgA~~~---a~~~l~~Pg------------~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~-~~L~pfLp~~P~ 735 (954)
T PRK12566 672 GQVYMDGANLN---AQVGLARPA------------DIGADVSHMNLHKTFCIPHGGGGPGMGPIGVR-AHLAPFVANHPV 735 (954)
T ss_pred CEEEEEeeChh---hccCCCChh------------hcCCCEEEecCCcccCcCccCCCCccchhhhh-hhhhhhccCCCC
Confidence 99999999852 111111112 23667888999999852 24445554442 22222222110
Q ss_pred ----c----cccC------cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEE
Q 043923 300 ----S----FGLV------SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWV 362 (469)
Q Consensus 300 ----~----~~~~------s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~--~~v 362 (469)
. .+.. +.....++..++.... .+ +.+....-..+..++.+.|.+. ++.+.++.+-+| ..+
T Consensus 736 ~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG--~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii 812 (954)
T PRK12566 736 VPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG--PQ-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECIL 812 (954)
T ss_pred cCCCCCCCCCCceeecccchHHHHHHHHHHHHHHC--HH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEE
Confidence 0 0111 1111222333333322 22 4444444455667888888763 444432222222 123
Q ss_pred ecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 363 DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++........ .+..++.++|+ ++||..-- ..|. ..+.+||+... .++++|++++++|+.+.++.++
T Consensus 813 ~~~~l~~~~g-~~~~dvakRL~-d~Gihapt-~~fP--v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~ 879 (954)
T PRK12566 813 DLRPLKAQTG-ISEEDVAKRLM-DYGFHAPT-MSFP--VPGTLMVEPTESESKAELDRFVEAMLSIRAEIGK 879 (954)
T ss_pred EccccccccC-CCHHHHHHHHH-HCCcEEeE-Eeec--cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 3332211111 22345778877 78997643 3342 37789999976 3899999999999999888554
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=126.78 Aligned_cols=306 Identities=14% Similarity=0.132 Sum_probs=198.3
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
.-+.++.+.+|+|++ .++.+++..| -......+.+|+.+|--|+...-.+..+...++.. |+.+.-+..
T Consensus 182 ~~hkelE~l~A~f~g---------~e~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLS-gAtiRVfkH 250 (519)
T KOG1357|consen 182 EEHKELEELVARFLG---------VEDAIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARLS-GATTRVFRH 250 (519)
T ss_pred HHHHHHHHHHHHhcC---------CcceEEEecc-ccccccCcceeecCCcceeeccccchheecccccc-CceEEEEec
Confidence 345788888888886 5778888888 33445566788899999999998998888888877 999888876
Q ss_pred cCCCCcccCHHHHHHHHHHHHhc-CCc----eeEEEE--ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKR-HLK----VKGVLV--TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~-~~~----~~~vvl--~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+ |...||+.|++.-.. +|+ -+-+++ ..-...-|.+.. +.+++.++++|..+++.||+++-...
T Consensus 251 N-------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~ 320 (519)
T KOG1357|consen 251 N-------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAM 320 (519)
T ss_pred C-------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeecccccccc
Confidence 5 567788888764221 111 122222 222345555554 66689999999999999999985433
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc---cc--cCcHHHHHHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS---FG--LVSSQTQYLLS 313 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~---~~--~~s~~~q~~~~ 313 (469)
+.. .....++.. .|..+..|.+++|+|+||.+| ||+.+ ++.+.+.++.... +. .+++++|....
T Consensus 321 g~t-Grgvce~~g------~d~~dvDImMGtftKSfga~G---Gyiag-sk~lid~lrt~s~~~~yat~~sppvaqq~~s 389 (519)
T KOG1357|consen 321 GAT-GRGVCEYFG------VDPEDVDIMMGTFTKSFGAAG---GYIAG-SKELIDYLRTPSPSALYATSLSPPVAQQILT 389 (519)
T ss_pred CCC-CcceeeccC------CCchhheeecceehhhccccc---ceecC-cHHHHhhhccCCCceeecccCChHHHHHHHH
Confidence 221 122222211 235577888999999999888 88888 5555555544322 11 13344554433
Q ss_pred HH--hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEe--cccccccCChhHHHHHHHHHHHhCCe
Q 043923 314 AL--LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD--MRHLLRSNTFEAEMELWKKIVYDVKL 389 (469)
Q Consensus 314 ~~--l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~--~~~~~~~~~~~~~~~l~~~ll~~~GI 389 (469)
.+ +...+- .+..++..++++++..+++..|.+.|+-+...+....+-+- .+... ..+-+.++++ +|
T Consensus 390 sl~~i~G~dg-t~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~k~--------~~f~r~~l~~-ni 459 (519)
T KOG1357|consen 390 SVKHIMGEDG-TNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPAKI--------VAFSREMLER-NI 459 (519)
T ss_pred HHHhhcCCCc-ccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCcccc--------cHHHHHHHhc-Cc
Confidence 32 222222 45567888899999999999999999988877665433222 22111 1344556644 66
Q ss_pred EEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 390 NISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 390 ~v~pg~~f~-~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+.-+.+.. +.-.+.+|+|.+. ++.|+++.+++.+.+.=+....
T Consensus 460 gvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~~~~ 505 (519)
T KOG1357|consen 460 GVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGDEDGV 505 (519)
T ss_pred eEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhchhhcc
Confidence 555333222 2235678999977 5899999999998877544433
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-11 Score=129.42 Aligned_cols=311 Identities=15% Similarity=0.146 Sum_probs=186.5
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCCcChHHHHhhhCC
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGFDRDLKWRTG 157 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~~g 157 (469)
+|+.++...+..++.+..| .+.-. +..+|+.++-...+.++. ...++|+++.-.|......+... |
T Consensus 526 qG~lq~i~elq~~l~eltG----md~~S-l~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~-G 599 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITG----FDAIS-LQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMA-G 599 (939)
T ss_pred HHHHHHHHHHHHHHHHHHC----CCCcc-cCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHC-C
Confidence 4677888888888888776 33323 334455554443333332 12357889998887777777777 9
Q ss_pred CEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 158 VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 158 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
++++.++++. +..+|+++|++.+++ .+.++++|++++|+| +|.+-+ .+++|+++|+++|.++++|.++....
T Consensus 600 ~~Vv~V~~d~--~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 600 MQVVPVNCDQ--DGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred CEEEEeccCC--CCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhhC
Confidence 9999999874 346899999999974 123889999999999 788754 26668999999999999999985311
Q ss_pred cCCCCccchhhhhhccccccCCcCCeEEEEccCccccC----CCcceEEEEEecCHHHHHHHHH--h----------ccc
Q 043923 238 FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG----LPGFRVGAIYSNDDMVVAAATK--M----------SSF 301 (469)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g----~~GlRiG~li~~~~~~~~~~~~--~----------~~~ 301 (469)
. ...... ..+-.+++.|.+|+|+ ..|-.+|++.+.+. +...+.. + +..
T Consensus 672 ~---~l~~Pg------------~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~-L~~~lPg~~v~~t~d~~greq~I 735 (939)
T TIGR00461 672 V---GLTSPG------------DLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH-LIPFLPKHDVVSMITGIGGSKSI 735 (939)
T ss_pred C---CCCCcc------------ccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh-chhhcCCCcccccccCCCCcccc
Confidence 1 111111 3356788889999775 35667899988533 2221110 0 000
Q ss_pred ccC-----cH-HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC-CceE-E--EEEecccccccC
Q 043923 302 GLV-----SS-QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS-NAGL-F--CWVDMRHLLRSN 371 (469)
Q Consensus 302 ~~~-----s~-~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~-~~g~-~--~~v~~~~~~~~~ 371 (469)
+.+ ++ .....+..+++.. ..+-+++..+.--.+..++.+.|.+ +.++.-+ ..+. | +.++++......
T Consensus 736 ga~s~~~~g~a~~~l~a~~yi~~l--G~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~ 812 (939)
T TIGR00461 736 GSVSAAPYGSASILPISWMYIKMM--GNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKT 812 (939)
T ss_pred ccccccccCcHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhc
Confidence 101 11 1111111122211 1233455555555577888888877 4454332 2222 1 335555321111
Q ss_pred ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 372 TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 372 ~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
. ....++.++|+ ++|+..-. ..|...+.-.++.+-+ .++++||++++++.++-++.++
T Consensus 813 g-~~~~dIakrL~-d~G~hapt-~~~pv~g~lmiepTE~-eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 813 G-IEAIDVAKRLQ-DYGFHAPT-LSFPVPGTLMVEPTES-ESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred C-CCHHHHHHHHH-hCCeeccc-cCCccCCeEEEEeecc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 1 22346777776 66997543 3343222224555554 3899999999999888776665
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-11 Score=118.74 Aligned_cols=293 Identities=14% Similarity=0.070 Sum_probs=180.3
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCCcCh-H-HHHhhhCCC-EEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-EPGEAFLLPTPYYPGF-D-RDLKWRTGV-EIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~-~-~~~~~~~g~-~~~~v 163 (469)
..++.+.+.+.+++.++ .+.+.+-++++.|+|.++++++..++ ++|+.|++.. .|+.- . .+++.. |+ ++..+
T Consensus 37 F~~i~~e~~~~L~~l~~--~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~-g~~~v~~l 112 (374)
T TIGR01365 37 GKEKLAEAIKKTREMLG--VPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQL-KLPDVRVL 112 (374)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhc-CCCCcEEE
Confidence 45666666666666655 11122346779999999999999998 5898888764 55543 3 455555 88 46666
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
..+ .+-.+++++++. + +.|++++....||...+.++ ++..+ ++.++|+|.+-+ +++.+.
T Consensus 113 ~~~--~g~~~~~~~ve~----------~-~~v~~vhnETSTGv~npv~~---i~~~~--~~~lliVDavSs---~g~~~l 171 (374)
T TIGR01365 113 EAE--YGKLPDLKKVDF----------K-NDVVFTWNGTTSGVRVPNGD---FIPAD--REGLTICDATSA---AFAQDL 171 (374)
T ss_pred cCC--CCCCCCHHHcCC----------C-CCEEEecCCCchheeccccc---ccccc--CCCcEEEEccch---hcCCCC
Confidence 544 233567888762 1 12567766678999998643 33211 489999999987 666542
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH--------H----------------hc
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT--------K----------------MS 299 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~--------~----------------~~ 299 (469)
.+- +..+++.|.-|.+++|+ .+++++.+++.+..... . .+
T Consensus 172 -~~d--------------~iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 235 (374)
T TIGR01365 172 -DYH--------------KLDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGS 235 (374)
T ss_pred -Chh--------------HCcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCC
Confidence 211 24577889999998665 57778776665533211 0 01
Q ss_pred ccccCcHHHHHHHHHHhcCchhhHH--HHHHHHHHHHHHHHHHHHHHHhcC-CceecC----CceEEEEEecccc-cc--
Q 043923 300 SFGLVSSQTQYLLSALLSDKKFTQN--YISENKKRLKQRHRKLVSGLEKAG-ISCLKS----NAGLFCWVDMRHL-LR-- 369 (469)
Q Consensus 300 ~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~----~~g~~~~v~~~~~-~~-- 369 (469)
.+.+++....+++..+|. ++.+ -++.+.++++++.+.+++.++++| +..... .+...+.+.++.. .+
T Consensus 236 t~~TP~v~~l~a~~~~l~---~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~ 312 (374)
T TIGR01365 236 TINTPSMLCVEDWLDALK---WAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDAL 312 (374)
T ss_pred CCCChHHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCcccccc
Confidence 112222333333334332 1122 268888899999999999999998 665542 2322344555432 11
Q ss_pred c-C-ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ecCCHHHHHHHHHHHHHH
Q 043923 370 S-N-TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 370 ~-~-~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~~~~e~i~~~l~~L~~~ 427 (469)
. + ......+ +...++++||.+.+|..- ..+..+||+. +.+++++++.+++.|.=+
T Consensus 313 ~~~~~~~~~~~-~~~~l~~~gi~i~~G~~~--~~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 313 DEDAQADFAKE-LISTLEKEGVAYDIGSYR--DAPSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred ccchhhHHHHH-HHHHHHHCCEEEeccccc--cCCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 0 0 0000223 444556779999887632 2346799966 447999999999988644
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-11 Score=120.60 Aligned_cols=287 Identities=17% Similarity=0.190 Sum_probs=168.2
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh------HHHHhhhCCCEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF------DRDLKWRTGVEIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~------~~~~~~~~g~~~~ 161 (469)
+..+++.+|++++ .+..+++++++.|+..++.+ +.+||.|++.+..|..| ...++.. |++++
T Consensus 124 ~~~le~~lA~l~g----------ae~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~-G~~~~ 191 (454)
T TIGR00474 124 YSHVEGLLCELTG----------AEDALVVNNNAAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIPDVMEQS-GAKLV 191 (454)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHHHHHHHc-CCEEE
Confidence 4788888888875 23355677788889888855 58999999998764322 2344555 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC--C--CCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL--G--TTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt--G--~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
.++.+. ..+++++++++++ ++++|++.+++|++ | ...+ +++|+++|++||+++++|.+.+-+.
T Consensus 192 ~v~~~~----~~~l~dle~aI~~------~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~ 258 (454)
T TIGR00474 192 EVGTTN----RTHLKDYEDAITE------NTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLV 258 (454)
T ss_pred EeCCCC----CCCHHHHHHhcCc------CCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccc
Confidence 997642 1478899998865 89999999999995 6 3556 5568999999999999998643210
Q ss_pred ----cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHH-
Q 043923 238 ----FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQY- 310 (469)
Q Consensus 238 ----~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~- 310 (469)
|+-...+.+.... ..+..+++.|.+|.+|-| ..|++++.++.+ +.+++..- ...+.-....
T Consensus 259 ~~~~~gl~~~p~~~~~~---------~~GaDiv~fSg~K~LgGp--~~G~i~g~~~~i-~~l~~~~l~r~lr~~k~~la~ 326 (454)
T TIGR00474 259 DLSRYGLPDEPTVQEVI---------AAGVDLVTFSGDKLLGGP--QAGIIVGKKELI-ERLKKNPLTRALRVDKLTLAA 326 (454)
T ss_pred cchhccCCCCcccccHh---------HcCCCEEEecCccccCCC--eEEEEEECHHHH-HhhhhchhHHHHhhChHHHHH
Confidence 1100111111221 225568889999998634 489999865444 22221100 0012222222
Q ss_pred ---HHHHHhcCch-h----hHHHHHHHHHHHHHHHHHHHHHHHhc---CC--ceecCC----ce---------EEEEEec
Q 043923 311 ---LLSALLSDKK-F----TQNYISENKKRLKQRHRKLVSGLEKA---GI--SCLKSN----AG---------LFCWVDM 364 (469)
Q Consensus 311 ---~~~~~l~~~~-~----~~~~~~~~~~~l~~~~~~l~~~L~~~---g~--~v~~~~----~g---------~~~~v~~ 364 (469)
.+..++...+ + ..+.+....++++++...+.+.|++. ++ ++.+.. || +-+.++.
T Consensus 327 l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~ 406 (454)
T TIGR00474 327 LEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTP 406 (454)
T ss_pred HHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEec
Confidence 2222222111 1 01223334556667778888888763 22 333322 12 1222221
Q ss_pred ccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 043923 365 RHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424 (469)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L 424 (469)
.. ....++. +.|++....|..- -.++.+.+-+..+.+++++.++++|
T Consensus 407 ~~-------~~~~~l~-~~lr~~~~~ii~r-----~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 407 DG-------LSAEKLE-ARLRELPPPIIGR-----IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred CC-------CCHHHHH-HHHhcCCCCEEEE-----EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 11 1122343 4455655333311 2366788888878889999888876
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-11 Score=121.16 Aligned_cols=334 Identities=11% Similarity=0.108 Sum_probs=170.4
Q ss_pred CCCCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCC
Q 043923 33 EVQNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVT 108 (469)
Q Consensus 33 ~~~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~ 108 (469)
.......+||+..+ .+.+. .|.+.+++++.. .....|... .+.+-.+|+.+.+...
T Consensus 43 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~-------------~~~~~~~~~---~~~~~~la~~l~~~~p---- 102 (431)
T PRK06209 43 WDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREAL-------------QDGCNFTRP---SAIELDAAESFLELID---- 102 (431)
T ss_pred EeCCCCEEEEccccccchhcCCCCHHHHHHHHHHH-------------HhCcCCCCC---CHHHHHHHHHHHHhCC----
Confidence 33444568998765 34443 466777766632 112223211 2333344555543321
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcC-CC-CEEEEc-cCCCcChHHH----HhhhCCCE------EEEeeccCCCCcccCH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAE-PG-EAFLLP-TPYYPGFDRD----LKWRTGVE------IVPIQCTSLNGFQITE 175 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~-~g-d~Vl~~-~P~y~~~~~~----~~~~~g~~------~~~v~~~~~~~~~~d~ 175 (469)
..+.+++++++++|+..+++.... .| ..|+.. .-.|..+... .....|.. +..++. .|+
T Consensus 103 -~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~d~ 174 (431)
T PRK06209 103 -GADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRY-------NDI 174 (431)
T ss_pred -ccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCC-------CCH
Confidence 236899999999999999886421 23 345443 2222211100 00000110 111111 267
Q ss_pred HHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccc
Q 043923 176 TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 255 (469)
Q Consensus 176 ~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~ 255 (469)
+.+++.+++. ..++.+|++ -|. .|...+.+.+++|.++|++||+++|+||++.++.+.. ........
T Consensus 175 ~~l~~~l~~~---~~~~aavi~-Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~---~g~~~~~g---- 241 (431)
T PRK06209 175 ASLEALFEDH---PGRIACVIL-EPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM---RGAQKLYG---- 241 (431)
T ss_pred HHHHHHHHhC---CCCEEEEEE-ccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc---chhhHHhC----
Confidence 8888888641 124555444 453 3457788899999999999999999999997753221 11111111
Q ss_pred ccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH--HHH---h-----cccccCcHHHHHHHHHHhc---Cchhh
Q 043923 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA--ATK---M-----SSFGLVSSQTQYLLSALLS---DKKFT 322 (469)
Q Consensus 256 ~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~--~~~---~-----~~~~~~s~~~q~~~~~~l~---~~~~~ 322 (469)
..+. +.+++|.+| .|+.+|++++++ .+.+. +.. . ......++++..++.+.|+ +.+.
T Consensus 242 ----v~PD---i~t~gK~lg-gG~p~~av~~~~-~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~- 311 (431)
T PRK06209 242 ----IVPD---LSCFGKALG-NGFAVSALAGKR-EYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDV- 311 (431)
T ss_pred ----CCcc---eeeehhhhc-CCcccEEEEEHH-HHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCH-
Confidence 1122 247899998 789999999954 44443 110 1 1111234455444444433 3222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcee-cCCceEEEEEecccccc-cCChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLR-SNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~-~~~~g~~~~v~~~~~~~-~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
+++.++.-...++.|.+...++++... ...+.++...-+..... .....-...+...++ ++||.+.|
T Consensus 312 ---~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~p~------- 380 (431)
T PRK06209 312 ---IERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETI-RRGVLMPS------- 380 (431)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHH-HCCccccc-------
Confidence 222222222233333333334554421 11222222111111000 011011113445554 56997621
Q ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 401 EPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 401 ~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++++.. +++++|++++++|.+++++..+
T Consensus 381 ----l~is~~-ht~~dId~~l~~l~~~l~~~~~ 408 (431)
T PRK06209 381 ----LVVSYA-HGDADIERTIDAVHGALGVYRK 408 (431)
T ss_pred ----cccccc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 466643 5999999999999999988743
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-11 Score=125.22 Aligned_cols=172 Identities=14% Similarity=0.124 Sum_probs=116.5
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS 167 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (469)
+.+..+.+|+.++ .....+++||+|.++.+++.+++.+||.|+++..+|-+..+++.+. |+++++++-..
T Consensus 197 i~eAe~~aA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLils-ga~PVYl~P~~ 266 (713)
T PRK15399 197 HLEAEEYIARTFG---------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMS-DVVPIWLKPTR 266 (713)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeeEEecccc
Confidence 4566666677665 3456889999999999999999999999999999999999888877 99999986432
Q ss_pred CCCcc----cCH-----HHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEE-EEeccccccc
Q 043923 168 LNGFQ----ITE-----TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHL-ISDEIYSGTV 237 (469)
Q Consensus 168 ~~~~~----~d~-----~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~i-I~Deay~~~~ 237 (469)
+.|. ++. +.++++|.+.+. ..+++++++++|+. .|.+++.++ |++.| |+.+ ++||||..+.
T Consensus 267 -n~~Gi~g~I~~~~~~~e~I~~~i~~~p~-~~~p~~vvit~pTY-dGi~yd~~~---I~~~~---g~~~ilvDEAhgah~ 337 (713)
T PRK15399 267 -NALGILGGIPRREFTRDSIEEKVAATTQ-AQWPVHAVITNSTY-DGLLYNTDW---IKQTL---DVPSIHFDSAWVPYT 337 (713)
T ss_pred -cccCCcCCCChhhccHHHHHHHHHhCCC-cCCceEEEEECCCC-CceeeCHHH---HHHHh---CCCEEEEeccchhhh
Confidence 2333 334 888888875431 12457899998854 899999666 55555 4555 6999998642
Q ss_pred -cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEE-EEEe
Q 043923 238 -FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG-AIYS 286 (469)
Q Consensus 238 -~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG-~li~ 286 (469)
|... +.+...+... .+....++++.|.+|.+ +++.-+ +|..
T Consensus 338 ~F~p~-~~~~sam~~~-----~~aD~~i~~tQStHKtL--~alTQaS~iHv 380 (713)
T PRK15399 338 HFHPI-YQGKSGMSGE-----RVPGKVIFETQSTHKML--AAFSQASLIHI 380 (713)
T ss_pred hcCcc-cCCcChhhCC-----CCCCeeeeeeeehhccc--cccchheeeee
Confidence 3221 1111111110 00223456689999997 555544 4444
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-11 Score=118.13 Aligned_cols=262 Identities=16% Similarity=0.177 Sum_probs=163.2
Q ss_pred CCCcHHHHHHHHHHHHhHcCCCCCC---CCCcEEEeCChHHHHHHHHHHhcC--------C-----CC-EEEEccCCCcC
Q 043923 85 YHGLPAFKKALVEFMSEIRGNKVTF---DTSKIVLTAGATSANETLMFCLAE--------P-----GE-AFLLPTPYYPG 147 (469)
Q Consensus 85 ~~g~~~Lr~aia~~l~~~~~~~~~~---~~~~i~~t~G~~~al~~~~~~l~~--------~-----gd-~Vl~~~P~y~~ 147 (469)
.+...++++.+.+++.+.+|..-.. ....=++|+|+++++..++.+..+ . ++ .|++.+-+|..
T Consensus 74 ~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S 153 (373)
T PF00282_consen 74 SPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYS 153 (373)
T ss_dssp SHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-TH
T ss_pred ccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccH
Confidence 3456889999999999887732110 124577999999999888766421 1 22 45666667888
Q ss_pred hHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEE
Q 043923 148 FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHL 227 (469)
Q Consensus 148 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~i 227 (469)
...++... |+.++.||+++ ++.+|+++|+++|++...++..+-+|+.+-.+..||.+= ++++|+++|+++++++
T Consensus 154 ~~Kaa~~l-Glg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D---~l~~i~~i~~~~~~wl 227 (373)
T PF00282_consen 154 IEKAARIL-GLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID---PLEEIADICEKYNIWL 227 (373)
T ss_dssp HHHHHHHT-TSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB----SHHHHHHHHHHCT-EE
T ss_pred HHHhccee-eeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCccccccc---CHHHHhhhccccceee
Confidence 88888887 99999999985 568999999999987655554454666777788899884 4667999999999999
Q ss_pred EEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH-HHHHhcc------
Q 043923 228 ISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA-AATKMSS------ 300 (469)
Q Consensus 228 I~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~-~~~~~~~------ 300 (469)
.+|.+|++..+-.+.......-++ .-.-+..+++|.++ ....+|+++..++.... .......
T Consensus 228 HVDaA~gg~~~~~~~~~~~~~gi~----------~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~ 296 (373)
T PF00282_consen 228 HVDAAYGGSALLSPEYRHLLFGIE----------RADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDD 296 (373)
T ss_dssp EEEETTGGGGGGHCTTGGGGTTGG----------GESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred eecccccccccccccccccccccc----------cccccccchhhhhc-CCccceeEEeecccchHHHhccChhhhcccc
Confidence 999999974332222222222211 23344559999997 66799999987765332 2210000
Q ss_pred -----------cc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEec
Q 043923 301 -----------FG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDM 364 (469)
Q Consensus 301 -----------~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~ 364 (469)
+. ..+. ...++..++.-..+..+-+.+..++..+..+++.+.+++. ++++..+..-..+++++
T Consensus 297 ~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~ 372 (373)
T PF00282_consen 297 RESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRY 372 (373)
T ss_dssp SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEE
T ss_pred cccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEe
Confidence 11 1222 2222322222111224445666677777888999999988 47766544434555543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=116.46 Aligned_cols=280 Identities=16% Similarity=0.123 Sum_probs=151.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------------------------CC---CEEEEccCCCcChHHHHhhhCCCE--
Q 043923 111 TSKIVLTAGATSANETLMFCLAE--------------------------PG---EAFLLPTPYYPGFDRDLKWRTGVE-- 159 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~--------------------------~g---d~Vl~~~P~y~~~~~~~~~~~g~~-- 159 (469)
.+.+++++++++|++.+++.... +| ..|+....+|++....+....|..
T Consensus 122 ~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~ 201 (464)
T TIGR00699 122 QDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPI 201 (464)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccc
Confidence 36899999999999999987621 11 268988988877654332221211
Q ss_pred ---------EEEeeccCC-CCc-----------ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHH
Q 043923 160 ---------IVPIQCTSL-NGF-----------QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLV 217 (469)
Q Consensus 160 ---------~~~v~~~~~-~~~-----------~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~ 217 (469)
+..+|.... ..+ .-+++.+++.+++ ...++.+|++..-....|... +.+-+++|.
T Consensus 202 ~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr 278 (464)
T TIGR00699 202 HKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK---WHKPVAAIIVEPIQSEGGDNHASPDFFRKLR 278 (464)
T ss_pred cccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh---cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHH
Confidence 111222110 000 0124455555542 123577766653355567765 788999999
Q ss_pred HHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH--HH
Q 043923 218 NIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA--AA 295 (469)
Q Consensus 218 ~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~--~~ 295 (469)
++|++||+++|.||++.++...+..+ ..+... + ...+.+ .+++|.+|..| ++++. +.+.. ..
T Consensus 279 ~lc~~~g~lLI~DEV~tGfGrtG~~f--a~e~~g-v-----~~~PDi---~t~gK~lg~gG----~~~~~-~~~~~~~~~ 342 (464)
T TIGR00699 279 DITKKHNVAFIVDEVQTGVGATGKFW--AHEHWN-L-----DDPPDM---VTFSKKFQTAG----YFFHD-PAFRPNKPY 342 (464)
T ss_pred HHHHHcCCEEEEeeeeeCCCCCcchh--HHHhcC-C-----CCCCCE---EEehhhhccCC----ccccc-hhccCCCCc
Confidence 99999999999999998742222111 111111 0 001223 36799996234 44442 22111 00
Q ss_pred HHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh----cCCce--e-cCCceEEEEEeccccc
Q 043923 296 TKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK----AGISC--L-KSNAGLFCWVDMRHLL 368 (469)
Q Consensus 296 ~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g~~v--~-~~~~g~~~~v~~~~~~ 368 (469)
....+++ .++++..++.+.|+...- +...+..++.-++|.+.|++ ++..+ . ....|+++-+.++..
T Consensus 343 ~~~~T~~-gnp~~~aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~- 415 (464)
T TIGR00699 343 RQFNTWM-GDPSRALILREIIQEIKR-----KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE- 415 (464)
T ss_pred ccccCCC-CCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH-
Confidence 0112222 455555555544432110 11222222233334444433 33111 1 113468888887531
Q ss_pred ccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 369 RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 369 ~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
.....++..++ ++||.+.+. +.+.+|+.... ++++++++++++|.+++
T Consensus 416 -----~~~~~i~~~~~-~~Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 416 -----AKRDKLLKKAR-NNGVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred -----HHHHHHHHHHH-HCCcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 11234555555 569999753 24679999977 49999999999998764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-09 Score=112.26 Aligned_cols=284 Identities=13% Similarity=0.124 Sum_probs=152.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------C---C-CCEEEEccCCCcChHHHHhhhCCCEEE-----------Eeec
Q 043923 111 TSKIVLTAGATSANETLMFCLA----------E---P-GEAFLLPTPYYPGFDRDLKWRTGVEIV-----------PIQC 165 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~----------~---~-gd~Vl~~~P~y~~~~~~~~~~~g~~~~-----------~v~~ 165 (469)
.+.|+++++++||++.+++... . + ..+|+...-+|++....+....|.... .++.
T Consensus 110 ~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08297 110 LPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 189 (443)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCC
Confidence 4689999999999999998762 1 1 257888888887765433322121100 0110
Q ss_pred cCC----CCcc---c------CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEec
Q 043923 166 TSL----NGFQ---I------TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDE 231 (469)
Q Consensus 166 ~~~----~~~~---~------d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~De 231 (469)
... .+.. . +++++++.+.. ...++.+||+.-...-.|. ..|.+.+++|.++|++||+++|.||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DE 266 (443)
T PRK08297 190 PKLRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDE 266 (443)
T ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 000 0000 0 12334444432 2336776665532444454 4788999999999999999999999
Q ss_pred cccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH----HH---HhcccccC
Q 043923 232 IYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA----AT---KMSSFGLV 304 (469)
Q Consensus 232 ay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~----~~---~~~~~~~~ 304 (469)
++.++...+..+ ..+... ..+.++ +++|.++ +|.+++.+. +... +. .....+..
T Consensus 267 V~tGfGRtG~~~--a~~~~g--------v~PDiv---~~gK~l~-----~~a~l~~~~-i~~~~~~~~~~~~~~~~T~~g 327 (443)
T PRK08297 267 VQTGVGLTGTAW--AYQQLG--------VRPDIV---AFGKKTQ-----VCGIMAGRR-VDEVEDNVFAVSSRINSTWGG 327 (443)
T ss_pred hhhccCccchHH--HHHhcC--------CCCCEE---Eeccccc-----ccceecchH-HHHhhhhhccCccccCCCCCc
Confidence 998742222211 111111 223333 5799874 233333232 2111 11 01111225
Q ss_pred cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eecCCceEEEEEecccccccCChhHHHHHHHH
Q 043923 305 SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS--CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKK 382 (469)
Q Consensus 305 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~--v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ 382 (469)
++++..++.+.|+.... .+.+++.++.-+..++.|.+..++.+.- ..... |.++.+.++.. .....++..
T Consensus 328 npl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G~~~~i~~~~~------~~~~~~~~~ 399 (443)
T PRK08297 328 NLVDMVRARRILEVIEE-DGLVENAARQGEYLLARLEELAAEFPAVVSNVRGR-GLMCAFDLPTT------ADRDEVIRR 399 (443)
T ss_pred cHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeecc-ceEEEEEecCH------HHHHHHHHH
Confidence 66676666666552211 1112222222222222233322333311 12233 57888887531 122346666
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
++ ++||.+.|+. ...+|++.+. ++++++++++++|.+++++.
T Consensus 400 l~-~~Gvl~~~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 400 LW-EEGVLVLPCG------ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HH-HCCEEEecCC------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 66 6799998753 2468997665 59999999999999998753
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-10 Score=112.90 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=127.4
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
.-+.+..+.+|+.++ .....+++||++.++..++.+++.+||.|+++.++|-+....+-+. |+..+++.-
T Consensus 70 G~i~eAqe~aA~~fg---------Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glila-Ga~Pvyl~p 139 (557)
T COG1982 70 GPIKEAQELAARVFG---------ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILA-GATPVYLEP 139 (557)
T ss_pred ccHHHHHHHHHHHhC---------CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHc-CCceEEecC
Confidence 345777788888875 3446789999999999999999999999999999999998887777 999888765
Q ss_pred cCCCCc----ccCHHHHHHHHHHHHhcCCce-eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 166 TSLNGF----QITETAIEEAYQLAQKRHLKV-KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 166 ~~~~~~----~~d~~~l~~~i~~~~~~~~~~-~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
..+..| .++.+.+++++.+. +.. ++++++||+. .|.+++.++ +++.+.++++++.+||++.-. ++-
T Consensus 140 ~~np~~gi~ggI~~~~~~~~l~~~----~~~~k~~vitnpTY-dGv~~n~~~---i~~~~~~~~a~v~~deah~~~-~~~ 210 (557)
T COG1982 140 SRNPLYGIIGGIPLETFKEALLAH----PDAEKLAVITNPTY-DGVCYNLRK---IVELLHHYGAWVLYDEAHPAH-FDF 210 (557)
T ss_pred CCCccccccCCCCHHHHHHHHHhC----hhhheeEEEecCcc-ceEeecHHH---HHHHHhhcCceEEhhhcCccc-ccc
Confidence 433323 36889999887653 244 8889998876 799998555 777788999999999998743 433
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEec
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSN 287 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~ 287 (469)
.+...-... ..+.+++..|.+|.++ +.-...+|...
T Consensus 211 ~~~l~~~~~----------~~~~~~~tqS~HK~l~-alSQaS~iHv~ 246 (557)
T COG1982 211 SPMLPESAL----------NGGADFVTQSTHKLLA-ALSQASMIHVK 246 (557)
T ss_pred cccCcchhh----------hcCceEEEechhhhhh-hhhhhHHHhhC
Confidence 221111111 2477899999999985 44344455444
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-10 Score=122.21 Aligned_cols=277 Identities=15% Similarity=0.137 Sum_probs=171.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCC--CEEEEccCCCcChHHHHhhh---CCCEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPG--EAFLLPTPYYPGFDRDLKWR---TGVEIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~g--d~Vl~~~P~y~~~~~~~~~~---~g~~~~ 161 (469)
..++++.||++.+ ++++++.++.++|.+.++++.++ ..+| ++|++++-.|+.+...++.. .|++++
T Consensus 150 l~~~Qt~ia~LtG--------~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~ 221 (993)
T PLN02414 150 LLNYQTMITDLTG--------LPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVV 221 (993)
T ss_pred HHHHHHHHHHHhC--------CChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEE
Confidence 3456677777775 78999999999999999888776 3434 78999999999887655331 399999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.++.+.. + ... ..+..+++.+|+ .+|.+.+ +++|+++|+++|+++++ .+.. ..-.
T Consensus 222 ~v~~~~~-----~------~~~------~~v~~vlvq~P~-~~G~v~d---v~~I~~~ah~~GaL~iV-aad~---lal~ 276 (993)
T PLN02414 222 VADEKDF-----D------YSS------GDVCGVLVQYPA-TDGEVLD---YAEFVKNAHANGVKVVM-ATDL---LALT 276 (993)
T ss_pred Eecchhh-----c------ccc------CceEEEEEecCC-CCeEEcC---HHHHHHHHHHcCCEEEE-EECH---HHhc
Confidence 8886421 1 000 134445555555 4999987 55689999999999999 4443 2111
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCcccc---CCCcceEEEEEecCHHHHHHHH-Hhc------------------
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL---GLPGFRVGAIYSNDDMVVAAAT-KMS------------------ 299 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~---g~~GlRiG~li~~~~~~~~~~~-~~~------------------ 299 (469)
...+.. ..+..+++++..|+. |..|-+.|++.+.++..+ .+. .+.
T Consensus 277 ~l~~pg------------e~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r-~~PgriVG~s~d~~g~~~~~l~Lqt 343 (993)
T PLN02414 277 MLKPPG------------EWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR-LMPGRIIGVSVDSSGKPALRMAMQT 343 (993)
T ss_pred CCCCHh------------hccCcEEEECCCccccCCCCCCCCeeEEEECHHHHh-hCCCcccCcccCCCCCccccccccc
Confidence 111222 235678888888875 234556899988654432 111 000
Q ss_pred -------ccccCcHHHHHHHHHHhcCc---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccc
Q 043923 300 -------SFGLVSSQTQYLLSALLSDK---KFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLR 369 (469)
Q Consensus 300 -------~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~ 369 (469)
.-++.+..+..++.+.+... .+...-+++..+++.+...++.+.|...|+++..+...--+.++++.
T Consensus 344 ReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~vt~~~~~--- 420 (993)
T PLN02414 344 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDTVKVKCSD--- 420 (993)
T ss_pred ccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCeEEEecCC---
Confidence 01122332222222222111 00012256666777888888999998888876543211123344431
Q ss_pred cCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHHHH
Q 043923 370 SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRLKA 426 (469)
Q Consensus 370 ~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~~ 426 (469)
..++.++|+ ++||.++... .+.+|+|+... +++||+.++++|+.
T Consensus 421 ------~~~v~~~L~-~~gI~l~~~~------~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 421 ------ADAIADAAA-KVGINLRVVD------ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred ------HHHHHHHHH-HCCCeeEEec------CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 124566665 6699776321 34699999874 89999999999974
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-09 Score=105.29 Aligned_cols=332 Identities=15% Similarity=0.133 Sum_probs=196.3
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
.+++|+-|...+|++.+.++.+...+- ...|.+.+ +..+.. ....++.+.+.+.+++.++ ++-+.+-+++..
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~---~~~g~s~~-~~sHRs--~~f~~i~~~~~~~L~~l~~--~p~~y~v~~l~G 78 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNW---EGSGMSVM-EMSHRG--KEFLSIIQKAEADLRELLD--IPDNYEVLFLQG 78 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcc---cccCcccc-ccCCCc--hHHHHHHHHHHHHHHHHhC--CCCCceEEEEeC
Confidence 367888888778877766665542110 00111111 122222 2335666666666666554 111223466778
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEeeccCCCCc--ccCHHHHHHHHHHHHhcCCceeE
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQCTSLNGF--QITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
|++.++..++..|+.+|+++++....+.+ ....++.. |...+..... .++| .+++++++. +++.+.
T Consensus 79 sgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~ 148 (365)
T PLN02452 79 GASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKY-CKTNVIASGK-DEKYTKIPSVSEWEL--------TPDAKF 148 (365)
T ss_pred ccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CCCcEEEecC-CCCCCCCCChHHcCC--------CCCCcE
Confidence 89999999999999999988887765433 23345555 6543333211 1222 245555421 236777
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|.+++-...||..++ ++.++. ++++|+|.+.+ +...+ ..+..+ + ++ ..|..|.+
T Consensus 149 v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~Ss---~g~~p-idv~~~------------~-v~-~~saqK~l 202 (365)
T PLN02452 149 VHICANETIHGVEFK--DYPDVG------NVPLVADMSSN---FLSKP-VDVSKY------------G-VI-YAGAQKNV 202 (365)
T ss_pred EEECCCCCCCcEecC--cccccC------CCeEEEECCcc---ccCcc-cCHHHc------------C-EE-EEeccccc
Confidence 788877778999643 122232 37999999987 55443 333222 2 23 35999999
Q ss_pred CCCcceEEEEEecCHHHHHHHH-------------HhcccccCcHHHHHHHHHHhcCchhhHH--HHHHHHHHHHHHHHH
Q 043923 275 GLPGFRVGAIYSNDDMVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFTQN--YISENKKRLKQRHRK 339 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~-------------~~~~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~ 339 (469)
|.+| +|.+++.++.+..... ..+.+++++....+++..+|+- +.+ -++.+.++.++..++
T Consensus 203 GP~G--l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~---l~~~gGl~~~~~r~~~~a~~ 277 (365)
T PLN02452 203 GPSG--VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFED---LLAQGGLKAMEKRNIRKADL 277 (365)
T ss_pred CCCC--eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHH
Confidence 9887 7888886555432111 0111234445555555544432 122 267788888899999
Q ss_pred HHHHHHhc-CCce--ec-C-CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CC
Q 043923 340 LVSGLEKA-GISC--LK-S-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 413 (469)
Q Consensus 340 l~~~L~~~-g~~v--~~-~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~ 413 (469)
+++.|++. |+.. .. . .+.+.+.+.+++. ..+.++ .+.++++|+...+|..-- .+ +|+++-. ++
T Consensus 278 l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~------~~~~~f-~~~~~~~g~~~~~G~r~~---gg-~R~s~yna~~ 346 (365)
T PLN02452 278 LYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS------ELEAEF-VKEAAKAGMVQLKGHRSV---GG-MRASIYNAMP 346 (365)
T ss_pred HHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc------hhHHHH-HHHHHHCCCcccCCcccc---Cc-eEEECcCCCC
Confidence 99999985 6611 11 1 2445666666642 123344 445568899999987532 23 9998844 69
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043923 414 EDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 414 ~e~i~~~l~~L~~~l~~ 430 (469)
.++++.+++.++++-++
T Consensus 347 ~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 347 LAGVEKLVAFMKDFQAK 363 (365)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999888765
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-09 Score=107.56 Aligned_cols=281 Identities=11% Similarity=0.082 Sum_probs=149.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------------CCCEEEEccCCCcChHHHHhhhCCCE-EE--Eee--------c
Q 043923 111 TSKIVLTAGATSANETLMFCLAE--------------PGEAFLLPTPYYPGFDRDLKWRTGVE-IV--PIQ--------C 165 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~P~y~~~~~~~~~~~g~~-~~--~v~--------~ 165 (469)
.+.+++++++++|++.+++.... .+.+|+...-+|++....+....|.. .. ..| .
T Consensus 103 ~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 182 (431)
T TIGR03251 103 LPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 182 (431)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCC
Confidence 46899999999999999887521 13678888888877653332221311 00 001 0
Q ss_pred cC------CCCcc-------cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEec
Q 043923 166 TS------LNGFQ-------ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDE 231 (469)
Q Consensus 166 ~~------~~~~~-------~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~De 231 (469)
.. ...+. -++++++..+.. ...++.++++.-...-.|.. .+.+.+++|.++|++||+++|+||
T Consensus 183 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 259 (431)
T TIGR03251 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDE 259 (431)
T ss_pred CcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 00 00000 012333334432 23467777766445556754 688999999999999999999999
Q ss_pred cccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCH--HHHH-HHHH---hcccccCc
Q 043923 232 IYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD--MVVA-AATK---MSSFGLVS 305 (469)
Q Consensus 232 ay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~--~~~~-~~~~---~~~~~~~s 305 (469)
++.++...+..+ ..+... ..+.++ +++|.+ +. .|++.. +. .+.. .... .......+
T Consensus 260 V~tG~GrtG~~~--a~~~~g--------v~PDi~---~~gK~~--~~--~g~~~~-~~i~~~~~~~~~~~~~~~~T~~gn 321 (431)
T TIGR03251 260 VQTGVGLTGTAW--AYQQLG--------VQPDIV---AFGKKT--QV--CGIMAG-RRVDEVADNVFAVPSRLNSTWGGN 321 (431)
T ss_pred chhccCccchHH--HHHhcC--------CCCCEE---EecccC--cc--ceEEec-chHHHhhhhcccCccccCCCCCCC
Confidence 999743222111 111111 123333 478886 21 255544 32 1111 1110 11112255
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CceecCCceEEEEEecccccccCChhHHHHHHHHHH
Q 043923 306 SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIV 384 (469)
Q Consensus 306 ~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll 384 (469)
+++..++.+.|+-..- .+..++.++.-+..++.|.+..++.. +.......|.++.+.++.. .....++..++
T Consensus 322 pl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~ 394 (431)
T TIGR03251 322 LVDMVRATRILEIIEE-ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQLY 394 (431)
T ss_pred HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCH------HHHHHHHHHHH
Confidence 6666666555543110 11122222222222333333223333 3221222357777877531 12234556655
Q ss_pred HhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 043923 385 YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~ 426 (469)
++||.+.|.. .+.+|++.+. ++++++++++++|.+
T Consensus 395 -~~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 395 -REGVLLLGCG------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred -hCCeEEecCC------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 6799997642 2468988876 499999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-11 Score=112.14 Aligned_cols=309 Identities=14% Similarity=0.182 Sum_probs=189.8
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEE
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIV 161 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~ 161 (469)
|+...-+.+|.+.||+|++ ..+.|+...|-+ ++..++.++++.||.|.+..-........++.. .-.++
T Consensus 135 YGt~DvHldlE~~iakF~G---------~E~aivYs~gF~-ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlS-RS~i~ 203 (467)
T KOG1358|consen 135 YGTIDVHLDLEKRIAKFMG---------TEDAIVYSYGFS-TIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLS-RSTIS 203 (467)
T ss_pred cccceeecccHHHHHHhhC---------Ccceeeeccccc-hhhhcchhhhccCcEEEEehhhhHHHHHHHhhh-hheeE
Confidence 6666668899999999997 467777777644 567788999999999999888877777777665 66777
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHH---hcCC---c-eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQ---KRHL---K-VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~---~-~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
.+..+ |.+.++..+.+.. .+.+ . -+.|++.----+||...+..+ |+++..+|...||+||.|+
T Consensus 204 ~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~---iv~lk~Kyk~RvildEs~S 273 (467)
T KOG1358|consen 204 YFKHN-------DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPE---IVKLKNKYKFRVILDESLS 273 (467)
T ss_pred EecCC-------CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHH---HHHHHhhheEEEEEecccc
Confidence 77644 5566766553211 1111 2 233444444567999998555 7778889999999999998
Q ss_pred ccccCC--CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--cccc---CcHH
Q 043923 235 GTVFSS--PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGL---VSSQ 307 (469)
Q Consensus 235 ~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~---~s~~ 307 (469)
-...+. .....+... +..+..++++|++-+++..| |+..+ +..+... +++. .+.. .++.
T Consensus 274 fG~lg~~GrGvteH~~v---------~~~~iDiv~~sm~~alas~G---gFc~G-~~~i~~h-QrLSg~~Y~fSAslPp~ 339 (467)
T KOG1358|consen 274 FGVLGKTGRGVTEHFGV---------PITDIDIVTASMETALASGG---GFCAG-KSFIADH-QRLSGSGYCFSASLPPY 339 (467)
T ss_pred cccccccCccccccCCC---------CccceeeeeecccccccccC---ceeec-ceeeEee-eeccccceeeeccCchh
Confidence 433332 211111111 23467788899999887666 77776 3333211 2221 1211 2222
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecccccccC--ChhHHHHHHHHHH
Q 043923 308 TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSN--TFEAEMELWKKIV 384 (469)
Q Consensus 308 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~--~~~~~~~l~~~ll 384 (469)
...++..++.-.+ +-....+.++.....+...|... ++.+....-+..+.+.+....... ...--.+++...+
T Consensus 340 la~aa~~ai~i~~----~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i 415 (467)
T KOG1358|consen 340 LAGAAIKAILIEE----WNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCI 415 (467)
T ss_pred hhhhHHHHHHHHh----hCcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHH
Confidence 3333333333222 22334455555556677777665 566666555567767766532221 1112245566666
Q ss_pred HhCCeEEeCCCCCCC----CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 385 YDVKLNISPGSSCHC----TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~----~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+ |+.+.-...--. .-+..+|||+.. +++++++++.+.|+++...
T Consensus 416 ~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 416 AE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred hh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 66 887764432211 113359999976 6999999999999987654
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-09 Score=106.84 Aligned_cols=293 Identities=15% Similarity=0.096 Sum_probs=161.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCC-CEEEEccCCCcChHHHHhhhCC-------------CEEEEeeccC--
Q 043923 111 TSKIVLTAGATSANETLMFCLA-------EPG-EAFLLPTPYYPGFDRDLKWRTG-------------VEIVPIQCTS-- 167 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~-------~~g-d~Vl~~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~-- 167 (469)
-++|++++|+++|++.+++... +|. .+++.-...|.+-.-.+....| ..+..+|...
T Consensus 105 l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y 184 (449)
T COG0161 105 LDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAY 184 (449)
T ss_pred ccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCccc
Confidence 5789999999999999987752 233 3477777777664322111112 0111222211
Q ss_pred -C---CCcc----cCHHHHHHHHHHHHhcC-CceeEEEEecC-CC-CCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 168 -L---NGFQ----ITETAIEEAYQLAQKRH-LKVKGVLVTNP-SN-PLGTT-MSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 168 -~---~~~~----~d~~~l~~~i~~~~~~~-~~~~~vvl~~P-~N-PtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
. +.+. -..++|++.|.. .+ .++.+ ++.-| .. -+|.. +|+.-++++-++|++||+++|.||+-.+
T Consensus 185 ~~~~~~~~~~~~~~~a~~le~~i~~---~g~~~IAA-fI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tG 260 (449)
T COG0161 185 RRGFFGEGDEEFAEAADELEALILE---HGPETIAA-FIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATG 260 (449)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHHh---cCcccEEE-EEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeC
Confidence 0 1111 113444544443 34 24554 55557 33 37764 5677889999999999999999999988
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hccc-----ccCcHHH
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSF-----GLVSSQT 308 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~-----~~~s~~~ 308 (469)
+--.+.-|.+-. .+..+.++ +++|.++-.=+.+|.+++.++ +.+.+.. ...+ .+.++++
T Consensus 261 FGRTG~~FA~e~----------~gi~PDi~---~~aKGLT~GY~Pl~a~l~~~~-I~~~~~~~~~~~f~HG~TYsghPla 326 (449)
T COG0161 261 FGRTGKMFACEH----------AGIVPDIL---CLAKGLTGGYLPLSAVLTSDR-IYEAFSDGDAGAFMHGHTYSGNPLA 326 (449)
T ss_pred CCcCchhhhhhh----------cCCCCCee---eecccccccchhhHhHhhhHH-HHHHHhcccCCeeccCCccccCHHH
Confidence 432333221110 01223344 678988633366777777444 4343322 2211 1245555
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-c-CCce--ecCCceEEEEEecccccccCCh--hHHHHHHHH
Q 043923 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-A-GISC--LKSNAGLFCWVDMRHLLRSNTF--EAEMELWKK 382 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-g~~v--~~~~~g~~~~v~~~~~~~~~~~--~~~~~l~~~ 382 (469)
.+++.+.|+-.+- +...++.++.-.+|.+.|+. + +-+. .-..-|++..+++......+.. ......+..
T Consensus 327 cAaAla~L~i~e~-----e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~ 401 (449)
T COG0161 327 CAAALANLDILEE-----EDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRA 401 (449)
T ss_pred HHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHH
Confidence 5555444432111 12233334444556666655 2 1111 1233467877887654332210 111233445
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+.++|+.++|.. ..+=++... +++++++++++++.+.+++..+
T Consensus 402 ~~~e~Gl~iRp~g-------~~i~~~PPliit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 402 AALERGLLIRPLG-------DVIYLMPPLIITREEIDELVDALREALDETLA 446 (449)
T ss_pred HHHHCCeEEeecC-------CEEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 5557799999872 245555554 4999999999999999986544
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.6e-10 Score=120.70 Aligned_cols=283 Identities=13% Similarity=0.128 Sum_probs=174.1
Q ss_pred cccCCCCC-----Cc----HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CC--CCEEEEccCCCc
Q 043923 79 LALFQDYH-----GL----PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-EP--GEAFLLPTPYYP 146 (469)
Q Consensus 79 ~~~Y~~~~-----g~----~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~--gd~Vl~~~P~y~ 146 (469)
+..|.|++ |. .++++.+|++.+ +++.++.+..++|++.+.++.++. .+ +++|++++-.|+
T Consensus 105 ~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG--------~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP 176 (954)
T PRK05367 105 YTAYTPYQPEISQGRLEALLNFQTMVADLTG--------LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHP 176 (954)
T ss_pred hhccCCCChHHHHHHHHHHHHHHHHHHHHHC--------CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCH
Confidence 44566664 32 344555666554 789999999999999998887762 44 489999999999
Q ss_pred ChHHHH----hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh
Q 043923 147 GFDRDL----KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE 222 (469)
Q Consensus 147 ~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~ 222 (469)
.....+ +.. |++++.++.+.+ ++ . .++.++++.+| |.+|.+.+ +++|+++|++
T Consensus 177 ~~~~v~~t~a~~~-G~ev~~~~~~~d----~~--------~------~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~ 233 (954)
T PRK05367 177 QTLDVLRTRAEPL-GIEVVVGDAAKA----LD--------H------DDVFGVLLQYP-GTSGEVRD---YTALIAAAHA 233 (954)
T ss_pred HHHHHHHHHHHhC-CCEEEEecCccC----CC--------c------ccEEEEEEecC-CCCeeecc---HHHHHHHHHH
Confidence 877554 334 999999986531 11 1 15666777777 46999987 6668999999
Q ss_pred cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc-----cCCCcceEEEEEecCHHHHHHHHH
Q 043923 223 KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD-----LGLPGFRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 223 ~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~-----~g~~GlRiG~li~~~~~~~~~~~~ 297 (469)
+|+++++|.....+ ... .+.. ..+-.++++|..|+ ||-| ..|++.+.++..+..--.
T Consensus 234 ~Gal~~vda~~~Al--~~l--~~pg------------e~GaDi~vgs~qkfg~P~g~GGP--~aGflavr~~~~r~lpgr 295 (954)
T PRK05367 234 RGALVAVAADLLAL--TLL--TPPG------------EMGADIAVGSAQRFGVPMGFGGP--HAAYFAVRDAYKRSMPGR 295 (954)
T ss_pred cCCEEEEEehhhhc--cCC--CChh------------hcCCCEEEeeCcccCCCCCCCCC--CEEEEEECHHHHhhCCCC
Confidence 99999998755221 111 1111 33667888899887 4434 489998855433221000
Q ss_pred hc-------------------------ccccCcHHHHH---HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 298 MS-------------------------SFGLVSSQTQY---LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 298 ~~-------------------------~~~~~s~~~q~---~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
+. .-++.+..... ++.+.+.-..+...-+++..++......++.+.|+..|+
T Consensus 296 ivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~ 375 (954)
T PRK05367 296 IVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGL 375 (954)
T ss_pred eeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 00 00111221111 111111000011223566677777788888999988787
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRLK 425 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~ 425 (469)
++..+.-.--+.++++ .+..++.++++ ++||.++.- .++.+|+|+... ++++|+.+++.|.
T Consensus 376 ~~~~~~~f~~~~~~~~--------~~~~~i~~~l~-~~gi~~~~~------~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 376 EVVHDSFFDTLTVEVG--------GDAAAVLARAL-AAGINLRRV------DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred ccCCCCCCCeEEEeCC--------CCHHHHHHHHH-HCCceeccc------cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 7653321111223332 12235666665 669988421 145799999874 8999999999997
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-09 Score=101.32 Aligned_cols=330 Identities=16% Similarity=0.171 Sum_probs=211.2
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC-----CCEEEEccCCCcChHHHH
Q 043923 78 ELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEP-----GEAFLLPTPYYPGFDRDL 152 (469)
Q Consensus 78 ~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~-----gd~Vl~~~P~y~~~~~~~ 152 (469)
....|....++..|.+++.+.++ -+.++.|.-+..|-.+++..+.++ |.+.++++..|....+.-
T Consensus 71 GDEAYagsrs~~~L~~avkdifG----------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h 140 (471)
T COG3033 71 GDEAYAGSRSYYALADAVKDIFG----------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGH 140 (471)
T ss_pred cchhhcccccHHHHHHHHHHhcC----------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHH
Confidence 34568888899999999988885 356778888888888888777654 455566666665554443
Q ss_pred hhhCCCEEEEeeccCCCC--------cccCHHHHHHHHHHHHhcCCceeEEEEecCCC-CCCCCCCHHHHHHHHHHHHhc
Q 043923 153 KWRTGVEIVPIQCTSLNG--------FQITETAIEEAYQLAQKRHLKVKGVLVTNPSN-PLGTTMSRNELNLLVNIITEK 223 (469)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~--------~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~N-PtG~~~s~e~l~~l~~~~~~~ 223 (469)
....|..++.++.++..+ .++|++.|++.|++.-.. ++..|+++-.+| -.|+..|.+.++++.++|++|
T Consensus 141 ~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky 218 (471)
T COG3033 141 IQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY 218 (471)
T ss_pred HHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc
Confidence 333388887777654333 237899999999875221 466666665555 668999999999999999999
Q ss_pred CeEEEEecccccc--ccC-----CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHH---HH
Q 043923 224 NIHLISDEIYSGT--VFS-----SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDM---VV 292 (469)
Q Consensus 224 ~~~iI~Deay~~~--~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~---~~ 292 (469)
++.++.|.+...- +|- +-...++.++..++- .+. .-+..|.-|. |+.- + |++...++. +-
T Consensus 219 ~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~-----sYa-D~~~mS~KKD-~lvn--mGGfl~~~D~~~fDvy 289 (471)
T COG3033 219 DIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMY-----SYA-DGCTMSAKKD-GLVN--MGGFLCFKDDSFFDVY 289 (471)
T ss_pred CCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHH-----hhh-hhheeecccc-ceec--cccEEEecCccHHHHH
Confidence 9999999865210 011 112345555544320 011 1122344453 2322 3 566555542 22
Q ss_pred HHHHH-------hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecc
Q 043923 293 AAATK-------MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMR 365 (469)
Q Consensus 293 ~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~ 365 (469)
...+. +.+++..+.-...+++.-|.+.-- .+|++.+..+ .++|.+.|++.|+++..|.||.-++++..
T Consensus 290 ~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv~Q----v~YL~~~l~~~GVpi~~paGGHavfvda~ 364 (471)
T COG3033 290 EECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRVAQ----VQYLADGLEEAGVPIVQPAGGHAVFVDAG 364 (471)
T ss_pred HHHHhheEeeccccccCcccchhHHHHHHHHHHhcC-cHHHHHHHHH----HHHHHHHHHhcCCeeEecCCCceEEeehh
Confidence 22222 124455555556666666655433 4455544433 37789999999999999999999999876
Q ss_pred ccccc--CChhHHHHHHHHHHHhCCeEEeCCCCCC--CCC---------CCeEEEEeec--CCHHHHHHHHHHHHHHHHh
Q 043923 366 HLLRS--NTFEAEMELWKKIVYDVKLNISPGSSCH--CTE---------PGWFRVCFAN--MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 366 ~~~~~--~~~~~~~~l~~~ll~~~GI~v~pg~~f~--~~~---------~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~ 430 (469)
+.... ........++..|.++.||...--..|. .+. -.-+|+++.. .+.+.++..+++++++.+.
T Consensus 365 ~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 365 KFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred hhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 54321 1223445788888899999776433232 111 1369999965 3899999999999998876
Q ss_pred hcc
Q 043923 431 ITT 433 (469)
Q Consensus 431 ~~~ 433 (469)
.++
T Consensus 445 ~~~ 447 (471)
T COG3033 445 AED 447 (471)
T ss_pred ccc
Confidence 544
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-08 Score=110.06 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=122.6
Q ss_pred CceeEEEEecC--CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 190 LKVKGVLVTNP--SNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 190 ~~~~~vvl~~P--~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
.++.++|+. | +.-.|.. .+.+-+++|.++|++||+++|.||++.++.-.+.-+ . .+... ..+.++
T Consensus 583 ~~iAAvI~E-PviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~f-a-~e~~g--------v~PDIi- 650 (817)
T PLN02974 583 GHIAALIIE-PVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVES-A-WELLG--------CKPDIA- 650 (817)
T ss_pred CCEEEEEEe-ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchh-h-HHhcC--------CCCCEE-
Confidence 356665555 5 4666775 478899999999999999999999999853333221 1 11111 223444
Q ss_pred EccCccccCCCc-ceEEEEEecCHHHHHHHHH------h-c-ccccCcHHHHHHHHHHhc---CchhhHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK------M-S-SFGLVSSQTQYLLSALLS---DKKFTQNYISENKKRLK 334 (469)
Q Consensus 267 i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~------~-~-~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~ 334 (469)
+++|.++ .| +.+|.+++. +.+.+.+.. + . ...+.++++..++.+.|+ +.+. ...+.++.+++.
T Consensus 651 --~~gKgLt-gG~~Plaa~l~~-~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~-~~~l~~~~~~l~ 725 (817)
T PLN02974 651 --CYAKLLT-GGLVPLAATLAT-EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPST-NPNLIPPGSRLR 725 (817)
T ss_pred --eeccccc-CCCCccEEEEEc-HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHH
Confidence 6889998 89 699999995 445444421 0 1 112256666666655554 3322 112222222221
Q ss_pred H-HHHHHHHHHHhcCCceecCCceEEEEEecccccccCCh--hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec
Q 043923 335 Q-RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTF--EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 411 (469)
Q Consensus 335 ~-~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~--~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~ 411 (469)
+ ..+.+.+.|.++..-.....-|+++.+++........+ .....+...++.++||.++|.. +.+|+....
T Consensus 726 ~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-------nvi~l~pP~ 798 (817)
T PLN02974 726 ELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-------NVVYLMCGP 798 (817)
T ss_pred HHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-------CEEEEeCCC
Confidence 1 12233334444432111122357777887532111111 1123445555437799999741 468876544
Q ss_pred -CCHHHHHHHHHHHHHHH
Q 043923 412 -MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 412 -~~~e~i~~~l~~L~~~l 428 (469)
++++++++++++|.+.+
T Consensus 799 ~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 799 TTSPETCTRLLRKVYRRL 816 (817)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 59999999999998865
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-08 Score=96.91 Aligned_cols=312 Identities=13% Similarity=0.126 Sum_probs=177.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChHHHHhhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFDRDLKWR 155 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~~~~~ 155 (469)
...|... ...+|-++++..+- -+-..++++|+++||.++++... .+.- .++....+|.+......-.
T Consensus 86 t~~~~~~-pi~~~Ae~L~s~~P--------~~l~~vfF~nsGsEANelal~mar~Yt~~~-diIa~r~~YHG~t~~t~gl 155 (442)
T KOG1404|consen 86 TSGYLNP-PIHDLAEALVSKLP--------GDLKVVFFVNSGSEANELALKMARLYTGNL-DIIARRNSYHGNTLYTLGL 155 (442)
T ss_pred eccccCC-cHHHHHHHHHHhCC--------CCceEEEEecCCchHHHHHHHHHHHhcCCc-eEEEeeccccCCchhhccc
Confidence 3445543 35788888888773 24456999999999999988764 2333 4666666666654333222
Q ss_pred CCCEEEEeeccC--------------CCCcccC-----HHHHHHHHHHH-HhcCCceeEEEEecC-CCCCCC-CCCHHHH
Q 043923 156 TGVEIVPIQCTS--------------LNGFQIT-----ETAIEEAYQLA-QKRHLKVKGVLVTNP-SNPLGT-TMSRNEL 213 (469)
Q Consensus 156 ~g~~~~~v~~~~--------------~~~~~~d-----~~~l~~~i~~~-~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l 213 (469)
.|......+.+. .+-|.-+ .+.+.+.+++. ....+..-+-++.-| .--.|. .+++--+
T Consensus 156 t~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYl 235 (442)
T KOG1404|consen 156 TGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYL 235 (442)
T ss_pred ccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHH
Confidence 133222221110 0011111 23333333222 122233333455555 444564 4678899
Q ss_pred HHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH
Q 043923 214 NLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA 293 (469)
Q Consensus 214 ~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~ 293 (469)
+++.++|+++|.++|.||+..++ +.-. ++..+- ..+.+-=+-|++|.+| .|..+|.++. .+++..
T Consensus 236 ka~~~~v~k~Ggl~IaDEVqtGf--GRtG--~~wgfe---------~h~v~PDIvTmAKgiG-nG~Pl~AVvt-t~EIa~ 300 (442)
T KOG1404|consen 236 KAAYKVVRKRGGLFIADEVQTGF--GRTG--HMWGFE---------SHGVVPDIVTMAKGIG-NGFPLGAVVT-TPEIAD 300 (442)
T ss_pred HHHHHHHHHcCCEEEehhhhhcc--cccc--cccccc---------ccCCCccHHHHHhhcc-CCCcceeeec-CHHHHH
Confidence 99999999999999999999984 3221 333331 2233333559999999 9999999998 556666
Q ss_pred HHHHhc-ccc--cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCceec--CCceEEEEEeccc
Q 043923 294 AATKMS-SFG--LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLK--SNAGLFCWVDMRH 366 (469)
Q Consensus 294 ~~~~~~-~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~v~~--~~~g~~~~v~~~~ 366 (469)
.+.+.. .+. ..++++..++.++|.-.. + ++.++.-++.-.+|.+.|.++ +.+.+. ...|+++-+++-+
T Consensus 301 v~~~~~~~fnTyggnP~a~avg~aVL~Vik--e---e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~ 375 (442)
T KOG1404|consen 301 VLNQKSSHFNTYGGNPVACAVGLAVLKVIK--E---ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVS 375 (442)
T ss_pred HHHhccccccccCCCchhHHHHHHHHHHHH--H---HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEec
Confidence 655443 222 245666666666654322 1 223333344445566655554 223322 2346788777643
Q ss_pred cc-ccCCh-hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHH
Q 043923 367 LL-RSNTF-EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 424 (469)
Q Consensus 367 ~~-~~~~~-~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L 424 (469)
.. ..... .....+..+-++++|++|--|..++ +.+||+... ++++|++.+++..
T Consensus 376 dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G----~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 376 DKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHG----NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ccCCCCCcchHHHHHHHHHHHHhCeeeecccccc----eEEEecCCeeccHHHHHHHHHHH
Confidence 22 11111 1122333444568899996665553 389998865 5999997777655
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-08 Score=96.63 Aligned_cols=220 Identities=19% Similarity=0.212 Sum_probs=125.6
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccC-CCcChHHHH----------hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHH
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTP-YYPGFDRDL----------KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLA 185 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P-~y~~~~~~~----------~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 185 (469)
..++|+||..++..+++|||+++...- -|......+ +.. |+....+++.+++ .+|++.+++++++
T Consensus 78 ~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~-Gi~Y~~v~L~~dg--~~D~~~i~~~~~~- 153 (403)
T PF06838_consen 78 FVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEF-GIKYREVPLTEDG--TIDWEAIKKALKP- 153 (403)
T ss_dssp S-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGG-T-EEEE--B-TTS--SB-HHHHHHHHHT-
T ss_pred ccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHh-CceeEEEeecCCC--CcCHHHHHHhhcc-
Confidence 457899999999999999999986543 476666554 334 8999999998644 5899999999985
Q ss_pred HhcCCceeEEEEecC-CCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccccccccCCCCccchhhhhhccccccCCcCC
Q 043923 186 QKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNIITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN 262 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P-~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 262 (469)
++|+|++.-. ..-+=..++.+++++++++.++. ++++++|.+|.+|+-..+ +. ..+
T Consensus 154 -----~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E--P~--------------~vG 212 (403)
T PF06838_consen 154 -----NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE--PT--------------EVG 212 (403)
T ss_dssp -----TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS---GG--------------GGT
T ss_pred -----CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC--cc--------------ccc
Confidence 8999888754 33444568999999999999875 899999999999532222 22 225
Q ss_pred eEEEEccCccccCCCcc--eEEEEEecCHHHHHHHHHhcccccCcH--HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHH
Q 043923 263 RVHIVYSLSKDLGLPGF--RVGAIYSNDDMVVAAATKMSSFGLVSS--QTQYLLSALLSDKKFTQNYISENKKRLKQRHR 338 (469)
Q Consensus 263 ~~i~i~S~SK~~g~~Gl--RiG~li~~~~~~~~~~~~~~~~~~~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 338 (469)
-.++.+|+=|..| .|+ --||+++..+.+..+..++..++...- .+......+++ +-++..++ ..+.++ -..
T Consensus 213 ADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~Q-GlFlAP~v--V~eAlK-gai 287 (403)
T PF06838_consen 213 ADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTNRLMFQ-GLFLAPHV--VGEALK-GAI 287 (403)
T ss_dssp -SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTHHHHHH-HHHHHHHH--HHHHHH-HHH
T ss_pred hhheeccceeCCC-CCccCcCCEEechHHHHHHHHhhhcCCccccccccCcchHHHHHh-HHhhchHH--HHHHHH-HHH
Confidence 6688999999887 443 238999977767777676665532100 01011111111 11111111 111121 223
Q ss_pred HHHHHHHhcCCceecCC----ceEEEEEeccc
Q 043923 339 KLVSGLEKAGISCLKSN----AGLFCWVDMRH 366 (469)
Q Consensus 339 ~l~~~L~~~g~~v~~~~----~g~~~~v~~~~ 366 (469)
.....++++|+++.|.. +-..-.+.+..
T Consensus 288 f~A~~fe~lG~~v~P~~~~~R~DiIQai~l~~ 319 (403)
T PF06838_consen 288 FAAALFEKLGFEVSPKPDDPRSDIIQAIELGS 319 (403)
T ss_dssp HHHHHHHHTT-EEES-TTS--SSS-EEEE-SS
T ss_pred HHHHHHHHcCCcCCCCCCCCCCceEEEEECCC
Confidence 44556788899988743 33455566653
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-08 Score=97.62 Aligned_cols=291 Identities=17% Similarity=0.120 Sum_probs=162.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC------CCC--EEEEccCCCcChHHHHhhhCCCEEEEeeccC------CCCcccCH
Q 043923 110 DTSKIVLTAGATSANETLMFCLAE------PGE--AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS------LNGFQITE 175 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~------~gd--~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~------~~~~~~d~ 175 (469)
..+.|++.|++|+|+..++....+ +-+ .++....+|++-...+....+......|.++ ...| -|+
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~y-nd~ 193 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY-NDS 193 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeeccc-CCH
Confidence 688999999999999999877532 112 3777777776654333221133333332211 0011 267
Q ss_pred HHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 176 TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 176 ~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
.++++.++.. ...+.+||+.--.--.|.+ .++|-++.|.+.|+++|+++|.||+..++.-.+. .-..++..
T Consensus 194 t~l~k~~~~h---~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~--~~a~e~~~--- 265 (433)
T KOG1401|consen 194 TALEKLFESH---KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGY--GWAQEYFG--- 265 (433)
T ss_pred HHHHHHHHhC---CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccch--HHHHHHhC---
Confidence 8888888763 1146776666435556654 5788899999999999999999999998532222 12222322
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc-----cccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-----FGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
..+. +.++.|.+| .|+.+|..++.++ +.+.+..... ..+.++++..++...+....- .+++++.
T Consensus 266 -----~~PD---I~t~aK~L~-gGlPigA~~v~~k-V~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~v 334 (433)
T KOG1401|consen 266 -----VTPD---ITTVAKPLG-GGLPIGATGVRDK-VAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNV 334 (433)
T ss_pred -----cCCc---ceeehhhcc-CCceeEEEeehHH-HHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHH
Confidence 1122 237889998 9999999999544 5444432221 122566666665555443221 2234555
Q ss_pred HHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEeccccccc--CChhHHHHH----HHHHHHhCCeEEeCCCCCCCCCC
Q 043923 330 KKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLRS--NTFEAEMEL----WKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~~~~~~~--~~~~~~~~l----~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
.+.-+..++.+.+.+.+..-.... -..|+++.+.+...... +.-.....+ ...+++ .|+.++|-.
T Consensus 335 s~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~-~gv~i~P~~------- 406 (433)
T KOG1401|consen 335 SKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLE-EGVRIAPIY------- 406 (433)
T ss_pred HHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhccccc-ceEEEeccc-------
Confidence 555555556667766654222221 23345554444322111 000011111 111121 244444400
Q ss_pred CeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 403 GWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 403 ~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
-+++. .++|.++++++.+.+++.+..
T Consensus 407 ---~l~~~-~~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 407 ---LLTVE-HTPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred ---ccccc-CcHHHHHHHHHHHHHHHHHhc
Confidence 12222 268999999999999887653
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-08 Score=96.75 Aligned_cols=332 Identities=12% Similarity=0.117 Sum_probs=188.1
Q ss_pred eeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCC
Q 043923 40 IIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAG 119 (469)
Q Consensus 40 ~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G 119 (469)
.++|+.|...+|++.++++-++..+- ...|.+.+ +..+.. ....++.+.+.+.+++.++ ++-+.+-+++..|
T Consensus 5 ~~nF~aGPa~lp~~Vl~~~~~~~~~~---~~~g~si~-eisHRs--~~F~~i~~~~~~~Lr~Ll~--~P~~y~Vlfl~Gg 76 (364)
T PRK12462 5 QLNFSGGPGALPDTVLEQVRQAVVEL---PETGLSVL-GMSHRS--SWFSSLLAQAEADLRDLLG--IPDEYGVVFLQGG 76 (364)
T ss_pred cceecCCCcCCCHHHHHHHHHHHhcc---cccCcccc-cccccc--HHHHHHHHHHHHHHHHHhC--CCCCCeEEEEecc
Confidence 46788888888887777766543221 00121211 222222 2345666666666666655 1112223455666
Q ss_pred hHHHHHHHHHHhcCCCCEEE--EccCCCcCh-HHHHhhhCCCEEEEeeccCCCCc--ccCHHHHHHHHHHHHhcCCceeE
Q 043923 120 ATSANETLMFCLAEPGEAFL--LPTPYYPGF-DRDLKWRTGVEIVPIQCTSLNGF--QITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 120 ~~~al~~~~~~l~~~gd~Vl--~~~P~y~~~-~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++.++..++..|+.+||+++ +.+-.|..- ...++.. | ++..+......+| .++++.++ + .++.+.
T Consensus 77 gT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~-g-~v~~~~~~~~~~~~~~p~~~~~~--~------~~d~~~ 146 (364)
T PRK12462 77 SSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRV-A-AMRVVWDGAASGYRTLPSLAELD--W------DARAPF 146 (364)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhc-C-CceEecCcCCCCCCcCCCHHHhc--c------CCCCcE
Confidence 99999999999999999654 444444432 2334444 5 4333322111122 23444431 1 125677
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|.+|+-...||..++ ++.+.++.++|+|-+-. +.+.+ ..+. +..++..+.-|.+
T Consensus 147 v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~---~~s~p-id~~--------------~~dvi~agsQKnl 200 (364)
T PRK12462 147 RHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSD---FMSRP-FDVE--------------AYGMVYAHAQKNL 200 (364)
T ss_pred EEEccCCCCceEecC--------cccccCCCeEEEEcCch---hhCCC-CChH--------------HccEEEeeccccC
Confidence 777766668899886 12223689999999877 44443 2221 2256677899999
Q ss_pred CCCcceEEEEEecCHHHHHHHH-------------HhcccccCcHHHHHHHHHHhcCchhhHH--HHHHHHHHHHHHHHH
Q 043923 275 GLPGFRVGAIYSNDDMVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFTQN--YISENKKRLKQRHRK 339 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~-------------~~~~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~ 339 (469)
|.|| ++.++.+++.+..... +.+.+.+++....+++...|+-.. ++ -++.+.++.++..+.
T Consensus 201 gP~G--ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~--~e~GGl~~~~~r~~~ka~~ 276 (364)
T PRK12462 201 GPAG--VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR--DEIGGVHAMRDINARKAAM 276 (364)
T ss_pred CCCc--eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH--HhccCHHHHHHHHHHHHHH
Confidence 9676 5677775554432111 112233455555555554432110 11 256777778888889
Q ss_pred HHHHHHhcC-Ccee---c-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CC
Q 043923 340 LVSGLEKAG-ISCL---K-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 413 (469)
Q Consensus 340 l~~~L~~~g-~~v~---~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~ 413 (469)
+++.+.+.. +... + ..+-+-+.+++++. ..+.++. +.++++|+.-.-|..- -+.+|+|+-. ++
T Consensus 277 ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~------~l~~~f~-~~a~~~gl~~lkGhr~----vgg~Ras~yna~~ 345 (364)
T PRK12462 277 LYATLDALNEVIDCHAHRAARSTMNVAFRFRQP------RLDTLFK-EQSTEAGFCGLSGHRS----IGGIRASLYNAVS 345 (364)
T ss_pred HHHHHHhCCCcccCCCChhhcCcceEEEEcCCH------HHHHHHH-HHHHHCCCccccCCcc----cCceEEEcCCCCC
Confidence 999998874 3222 1 22334555665532 2233444 4456779988766432 3459999954 58
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043923 414 EDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 414 ~e~i~~~l~~L~~~l~~ 430 (469)
.|.++.+++-++++-++
T Consensus 346 ~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 346 EQAVSRLCAFLKDFAIR 362 (364)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88887777777776554
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.3e-09 Score=102.85 Aligned_cols=248 Identities=17% Similarity=0.089 Sum_probs=137.7
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||+..+ .+.+. .|.+.+++++.. .............+...++++.+.+..+ -..
T Consensus 14 dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~-------------~~~~~~~~~~~~~~~~~~la~~L~~~~p----~~~ 76 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLGHNHPEIAEAIAEQA-------------NKLNYVSFSGFTHPEAAELAEKLAELFP----GGL 76 (339)
T ss_dssp TSEEEEESSHHHHTTTT-BT-HHHHHHHHHHH-------------HHCSSCSTTTSEEHHHHHHHHHHHHHSS----TTE
T ss_pred CCCEEEECCCCccceecCCCccccchhHHHHh-------------hhcccccccceeccchhhhhhhhhhccc----ccc
Confidence 34568898754 44443 456666666531 1111212123345667777777776642 245
Q ss_pred CcEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCCcChHHHHhhhCC------------CEEEEeeccCCCC-
Q 043923 112 SKIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGFDRDLKWRTG------------VEIVPIQCTSLNG- 170 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~- 170 (469)
+.+++++++++|++.+++... .....|+...-+|++....+....+ ..+..+|.+....
T Consensus 77 ~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 156 (339)
T PF00202_consen 77 DRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAAD 156 (339)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHH
T ss_pred ceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchh
Confidence 789999999999999998865 1336888888888775432211101 2345555431100
Q ss_pred --cccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchh
Q 043923 171 --FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIM 247 (469)
Q Consensus 171 --~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~ 247 (469)
..-..+.+++.+.+. ...++.+|++.--..-.|. ..+.+-+++|.++|++||+++|.||++.++.-.+..+ . .
T Consensus 157 ~~~~~~~~~~~~~~~~~--~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~-a-~ 232 (339)
T PF00202_consen 157 EEEQACLNALEELIAAL--NADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFF-A-S 232 (339)
T ss_dssp HHHHHHHHHHHHHHHHH--HGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS-G-H
T ss_pred hhHHHHHHHHHHHHHhh--cCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCcc-c-e
Confidence 000011233333222 1236666555532334554 4578889999999999999999999999853333322 1 2
Q ss_pred hhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhc
Q 043923 248 EILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLS 317 (469)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~ 317 (469)
+... ..+.++ +++|.++ .|+.+|.+++.+ .+.+.+.... ..+..++++..++.+.|+
T Consensus 233 ~~~g--------v~PDiv---~~gK~l~-gG~p~sav~~~~-~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~ 291 (339)
T PF00202_consen 233 EHYG--------VDPDIV---TFGKGLG-GGLPISAVLGSE-EIMEAFQPGSHGSTFGGNPLSCAAALATLE 291 (339)
T ss_dssp HHHT--------SSSSEE---EEEGGGG-TTSSEEEEEEEH-HHHTTSCTTSSTCTTTT-HHHHHHHHHHHH
T ss_pred eccc--------ccCccc---ccccchh-hhhhcccccccc-hhhccccccccccccccchHhhhhhhhHHH
Confidence 2211 223344 4679998 889999999954 4444332211 122245666666665554
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-08 Score=90.46 Aligned_cols=276 Identities=17% Similarity=0.193 Sum_probs=163.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhc------C--C-CC-EEEEccCCCcChHHHHhhh---------CCC----EEEEeeccC
Q 043923 111 TSKIVLTAGATSANETLMFCLA------E--P-GE-AFLLPTPYYPGFDRDLKWR---------TGV----EIVPIQCTS 167 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~------~--~-gd-~Vl~~~P~y~~~~~~~~~~---------~g~----~~~~v~~~~ 167 (469)
-+.|+.+|-+.||.+.++.... + | .. .|+.....|++-.-.+-.. +|- .+..+|++
T Consensus 116 ~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~- 194 (427)
T KOG1402|consen 116 YDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG- 194 (427)
T ss_pred cceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-
Confidence 6778888888999998887653 1 2 22 3333333343221111111 010 02222321
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 168 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
|.++|+.++++ +++.++++.--+--.|.+. +..-+++..++|.+|++++|.||+..++.-.+.- ..
T Consensus 195 ------d~eale~~l~~-----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~-la- 261 (427)
T KOG1402|consen 195 ------DAEALEVALKS-----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKL-LA- 261 (427)
T ss_pred ------CHHHHHHHhcC-----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcE-EE-
Confidence 67899998875 4777755554477788754 5668899999999999999999999875333321 11
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh---cccccCcHHHHHHHHHHhcCchhh
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM---SSFGLVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~ 322 (469)
.++ .+ ..+.+++ +.|+++ .| +.+..++++++ +...++.. ++++ -+++...++.++|.-..
T Consensus 262 ~d~-en-------v~PDivi---lgKalS-GG~~Pvsavl~~~~-im~~~~pgeHgsTyg-gNpLg~~vaiAalevi~-- 325 (427)
T KOG1402|consen 262 CDY-EN-------VRPDIVI---LGKALS-GGVYPVSAVLADDD-IMLNIKPGEHGSTYG-GNPLGCAVAIAALEVIV-- 325 (427)
T ss_pred eeh-hh-------cCCCeEE---Eecccc-CCeeeeEEEEecHH-HHhccCCCccccccC-CChHHHHHHHHHHHHHH--
Confidence 111 11 2233443 569987 44 67888888444 43333322 2333 57777777776664322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--C----ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKAG--I----SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSS 396 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~g--~----~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~ 396 (469)
+ +...++-+..-..|+..|.++. + +..... |++..+.+... .....+++++|..+ +++|++.-|-.
T Consensus 326 e---ekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGr-Gl~~ai~i~~~--~~~~~~aw~~cl~l-k~~g~LAkptH- 397 (427)
T KOG1402|consen 326 E---EKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGR-GLLNAIVINPS--KTSGQDAWDVCLAL-KENGLLAKPTH- 397 (427)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhccccccchhheeecc-ceEEEEEeccc--cccchhHHHHHHcc-cccccccCCCC-
Confidence 1 2233333444566777777762 2 333333 47766665421 11224556666554 57798877643
Q ss_pred CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 397 CHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 397 f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
.+-||++... +++++++++++.|++.+.
T Consensus 398 -----~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 398 -----GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred -----CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 4589999876 499999999999998764
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=99.11 Aligned_cols=197 Identities=14% Similarity=0.186 Sum_probs=135.6
Q ss_pred CCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC-----------------------------
Q 043923 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEP----------------------------- 134 (469)
Q Consensus 84 ~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~----------------------------- 134 (469)
..++...+++.+.+++.+.+|. +...=.+|+|+|+|...++.+..+.
T Consensus 117 ~SP~~t~lE~~vi~~la~l~G~----~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~ 192 (608)
T TIGR03811 117 SSPATSQMEEEVGKEFATLMGY----KNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTK 192 (608)
T ss_pred cCchHHHHHHHHHHHHHHHhCC----CCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccc
Confidence 3445688999999999988773 3344558899999888766553210
Q ss_pred -----------------------C------CEEEEccCCCcChHHHHhhhCCC---EEEEeeccCCCCcccCHHHHHHHH
Q 043923 135 -----------------------G------EAFLLPTPYYPGFDRDLKWRTGV---EIVPIQCTSLNGFQITETAIEEAY 182 (469)
Q Consensus 135 -----------------------g------d~Vl~~~P~y~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i 182 (469)
| -.++++.-.|.++..++... |+ .++.||++ .++.+|++.|+++|
T Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il-GlG~~~vv~VpvD--~~~rmd~~~L~~~I 269 (608)
T TIGR03811 193 EIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII-GIGLDQVIPVPVD--SNYRMDINELEKII 269 (608)
T ss_pred cccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc-CCCcccEEEeecC--CCCcCCHHHHHHHH
Confidence 0 05777777788888888877 88 58999987 46789999999999
Q ss_pred HHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCe--EEEEeccccccc---cCCCC--cc-----------
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNI--HLISDEIYSGTV---FSSPG--FV----------- 244 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~--~iI~Deay~~~~---~~~~~--~~----------- 244 (469)
++....+..+-+||.+-.+..+|.+=+.+++.+|.+.++++|+ ++.+|.||+++. +-... +.
T Consensus 270 ~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~ 349 (608)
T TIGR03811 270 RKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAE 349 (608)
T ss_pred HHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccc
Confidence 8755555455566777778889999887776666666688887 699999999842 11100 00
Q ss_pred -------------chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHH
Q 043923 245 -------------SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAA 295 (469)
Q Consensus 245 -------------s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~ 295 (469)
.....+.. ...-.-+.-.++|.+. ....+|.++..+..+...+
T Consensus 350 ~~~f~~~~~~l~~~~~~~l~g-------le~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~ 405 (608)
T TIGR03811 350 YGVFTEKKEYISREVYNAYKA-------ISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVI 405 (608)
T ss_pred ccccccccccccHhHHHHHhc-------CcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHH
Confidence 01111111 1223334458999875 7789999998777654443
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.7e-07 Score=86.49 Aligned_cols=318 Identities=14% Similarity=0.172 Sum_probs=183.3
Q ss_pred cccccCCCC---CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHH--HHHHHh-cCC----CCEEEEccCCCc
Q 043923 77 RELALFQDY---HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANE--TLMFCL-AEP----GEAFLLPTPYYP 146 (469)
Q Consensus 77 ~~~~~Y~~~---~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~--~~~~~l-~~~----gd~Vl~~~P~y~ 146 (469)
..++-|.|. +|+.++...+.+||.+..| .+.=.+-..+|++.=.. +++++. ... .+.+++|+-.|.
T Consensus 93 ~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG----~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHG 168 (496)
T COG1003 93 ANIHPFQPEEQVQGYLELIYELQEWLKEITG----MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHG 168 (496)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHhcC----CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccC
Confidence 344444433 6899999999999998755 22223334455443221 222333 223 368999999998
Q ss_pred ChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeE
Q 043923 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIH 226 (469)
Q Consensus 147 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~ 226 (469)
.-..++.+. |.+|+.|++++++ .+|+++|++++.+ ++.++.++|||. .|.. .+.+++|+++.+++|..
T Consensus 169 TNPASAam~-G~~VV~V~~~~~G--~VDlddLk~k~~~------~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~ 236 (496)
T COG1003 169 TNPASAAMA-GFKVVVVKCDENG--NVDLDDLRAKAED------NLAALMITNPST-LGVF--EEDIREICEIVHEAGGQ 236 (496)
T ss_pred CChhhHhhc-CceEEEEecCCCC--CccHHHHHHHhcc------ceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCE
Confidence 887788887 9999999998655 5999999999875 899999999974 4543 57889999999999999
Q ss_pred EEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC----CcceEEEEEecCHHHHHHHH------
Q 043923 227 LISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL----PGFRVGAIYSNDDMVVAAAT------ 296 (469)
Q Consensus 227 iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~----~GlRiG~li~~~~~~~~~~~------ 296 (469)
+..|.|=..-..+-..+ . +-+-.++=--++|+|+. .|-..|=+.. .+.+...+-
T Consensus 237 vY~DGANlNA~vG~~rP-G--------------d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgV-k~~L~pfLP~p~~~~ 300 (496)
T COG1003 237 VYYDGANLNAIVGLARP-G--------------DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGV-KAHLAPFLPGPVVYH 300 (496)
T ss_pred EEecCcchhhhhccccc-c--------------ccccceEEeecccccccCCCCCCCCCCceeh-HhhccccCCCCcccC
Confidence 99998875433332111 1 11222333367787743 2344444432 111111110
Q ss_pred ----------------HhcccccCcHHHH--HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC-c
Q 043923 297 ----------------KMSSFGLVSSQTQ--YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN-A 356 (469)
Q Consensus 297 ----------------~~~~~~~~s~~~q--~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~-~ 356 (469)
+...++...++.. ++-...+. .+-+++.-+.---+..++...|+.. .+.+.+.. -
T Consensus 301 ~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG-----~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~ 375 (496)
T COG1003 301 DVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMG-----ADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRV 375 (496)
T ss_pred CCccccccCCCCccceeeccccCcchHHHHHHHHHHHHh-----HHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcc
Confidence 0111111111111 11112221 2223443333344667888888864 23222221 0
Q ss_pred eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 357 GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
..=+.++......... ....+++++|+ ++|+.. |...|...-.+.+-|=... .+++++++.+++|.++.++-++.
T Consensus 376 ~HE~ild~r~l~~~~G-v~~~DvAKrLl-D~GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~ 451 (496)
T COG1003 376 AHECILDARPLKKETG-VRALDVAKRLL-DYGFHA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAV 451 (496)
T ss_pred eeEEEeechHhHhhcC-CcHHHHHHHHH-hcCCCC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 1112234432211111 33446777777 679875 3444543234556665544 37899999999999998887774
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-07 Score=88.64 Aligned_cols=305 Identities=13% Similarity=0.157 Sum_probs=184.4
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----C-CC---CEEEEccCCCcChHHHHhhhCC
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----E-PG---EAFLLPTPYYPGFDRDLKWRTG 157 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~-~g---d~Vl~~~P~y~~~~~~~~~~~g 157 (469)
++...+..++.+++..-++.+ +.+.=..|.|+++++..+..... . .| ..++++.-.+..+...+... +
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~---~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf-~ 191 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAP---SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYF-E 191 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCC---ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhE-E
Confidence 355677777777776665522 22344578999999655554431 1 12 34666666677777767666 9
Q ss_pred CEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh-cCeEEEEecccccc
Q 043923 158 VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE-KNIHLISDEIYSGT 236 (469)
Q Consensus 158 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~-~~~~iI~Deay~~~ 236 (469)
+++..||+++ ++|.+|+..+...+++ ++.+++..-|+-|+|.. |.+++|.++..+ +++.+.+|.+-++|
T Consensus 192 v~l~~V~~~~-~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgF 261 (491)
T KOG1383|consen 192 VELREVPLDE-GDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGF 261 (491)
T ss_pred EEEEeeeccc-cceEecHHHHHHHhcc------ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccc
Confidence 9999999986 7899999999999987 89999999999999987 556668888878 99999999999886
Q ss_pred ccC-CCCccchhhhhhccccccCCcCCeEEEE-ccCccccCCCcceEEEEEecCHHHHHH--HHHh-------cccc-cC
Q 043923 237 VFS-SPGFVSIMEILKDRNCENTQVWNRVHIV-YSLSKDLGLPGFRVGAIYSNDDMVVAA--ATKM-------SSFG-LV 304 (469)
Q Consensus 237 ~~~-~~~~~s~~~~~~~~~~~~~~~~~~~i~i-~S~SK~~g~~GlRiG~li~~~~~~~~~--~~~~-------~~~~-~~ 304 (469)
+-. ........++ ..+.|..+ .+-+| ||+.--.+||++-.++.+... +-.. .++. ..
T Consensus 262 i~p~~~~~~~~fdF----------r~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~Tlng 330 (491)
T KOG1383|consen 262 INPAGYLNEEEFDF----------RVPGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNG 330 (491)
T ss_pred cccccccCcccccc----------CCCCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCccccc
Confidence 542 1110111111 11223333 23345 677767789998765544221 1100 1111 01
Q ss_pred c-----HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecccccccCChhHHHH
Q 043923 305 S-----SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEME 378 (469)
Q Consensus 305 s-----~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~ 378 (469)
| ..+|++..--+...+ ..+..+.+.+....|++.+++. ++.+...+.-.|+...-.. .+.-+
T Consensus 331 SR~g~~va~~wa~~~~lG~eG-----Y~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~-------~~i~e 398 (491)
T KOG1383|consen 331 SRPGSQVAAQWAALMSLGEEG-----YRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND-------VNIFE 398 (491)
T ss_pred CCcccHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc-------cchhh
Confidence 1 233443333333333 3455566777888899999987 6666654332333222221 11223
Q ss_pred HHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhcc
Q 043923 379 LWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
...++++.|-.+. +-.|. ..+-+|+.. ..++-.++++.-|.+++++..+
T Consensus 399 -lsd~l~~~GW~ln-alq~P----~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 399 -LSDLLRKKGWILN-ALQFP----AAIHICVTRVHAREDVADRFVADIRKVVEELKS 449 (491)
T ss_pred -hhHHHHhcCcCcc-ccCCC----CceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence 3445667787764 33332 234445443 2455567888888888877665
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-06 Score=80.04 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=162.9
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
..+.+++++++++-.++.++.+.++ +|+.|++++-.-.+....+..- -+++.....+ -...+.++++++++++
T Consensus 91 A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g-~~~~~~~~~~--~~~~~~P~~~~~~~~d-- 165 (407)
T COG3844 91 ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEG-LADLLGIGYD--LEGVIAPRALEEAITD-- 165 (407)
T ss_pred CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcc-hhhhhccccc--ceeeeChHHHHHhhcc--
Confidence 6789999999999999888877643 5888888876433322221110 1111111111 1112456788888876
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
.+.+|++++-+.-||+.+. +.+|-.+++++|++++.|-+|+.. .-+ ..+. ..+..+-
T Consensus 166 ----d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaG---avp-~~Lh------------~~gaDfa 222 (407)
T COG3844 166 ----DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAG---AVP-VDLH------------AAGADFA 222 (407)
T ss_pred ----ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccC---Ccc-eeec------------ccCCCee
Confidence 8888888888889999998 555788888999999999999732 211 1211 2356677
Q ss_pred EccCccccC-CCcceEEEEEecCHHHHHHHHHhccc------------------------ccCcHHHHHHHHHHhcCchh
Q 043923 267 VYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMSSF------------------------GLVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 267 i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~~~------------------------~~~s~~~q~~~~~~l~~~~~ 321 (469)
|++--|.++ -||-. +++...++........+..+ ++.+..+..++...|.-..
T Consensus 223 igcsyKYLNgGPGap-a~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa- 300 (407)
T COG3844 223 IGCSYKYLNGGPGAP-AGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFA- 300 (407)
T ss_pred eeeeceeccCCCCCc-eeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhh-
Confidence 888889884 25544 44444333222211111111 1123334444444333211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCC----ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSN----AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP 393 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~----~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p 393 (469)
+-.+.+.|++--...+++.+.++.. ++++..|. .|.-+.+..|. ..+.++ .|.++||..-
T Consensus 301 -~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~---------~~~V~q-aLi~rGVigD- 368 (407)
T COG3844 301 -DVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH---------GYQVMQ-ALIDRGVIGD- 368 (407)
T ss_pred -hcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc---------HHHHHH-HHHHcCcccc-
Confidence 1114555555444556677666643 45554432 23444444442 123444 4557799752
Q ss_pred CCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhh
Q 043923 394 GSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 394 g~~f~~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~ 431 (469)
|- .++-+|+.++- ++-.++=.+++.|.+++++.
T Consensus 369 ---~R--~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 369 ---FR--EPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred ---cc--CCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 22 47789999975 37899999999999999864
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-06 Score=89.75 Aligned_cols=262 Identities=13% Similarity=0.181 Sum_probs=153.7
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEEccCCCcChHHHHh---hhCCCEEEEeeccCCCCcccCHHHHHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLA---EPGEAFLLPTPYYPGFDRDLK---WRTGVEIVPIQCTSLNGFQITETAIEEAY 182 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~---~~gd~Vl~~~P~y~~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 182 (469)
++..|.-+..+++.+.++++.+.. +++++|++++-.|+.+...++ ...|++++.++. ++++..+
T Consensus 124 m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~----------~~l~~~~ 193 (939)
T TIGR00461 124 LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDC----------SDIKKAV 193 (939)
T ss_pred CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcH----------HHHhhcC
Confidence 677788888898888887776642 234789999999998876655 223888887742 3344332
Q ss_pred HHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCC
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN 262 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 262 (469)
++.++++.+|+. +|.+. ++++|+++++++|.+++++.--.. ... ..+..++ +
T Consensus 194 --------~~~~v~~q~Pn~-~G~ie---d~~~i~~~~h~~gal~~~~ad~~a--l~l--l~~Pge~------------G 245 (939)
T TIGR00461 194 --------DVFGCLLQYPAT-DGSIL---DYKQLIDALHSHKSLVSVAADLMA--LTL--LTPPGHY------------G 245 (939)
T ss_pred --------CEEEEEEECCCC-CeEEe---cHHHHHHHHHHcCCEEEEEechHH--hCC--cCCHHHc------------C
Confidence 456788888875 88886 477799999999999998543221 111 1122222 3
Q ss_pred eEEEEccCccccCC----CcceEEEEEecCHHHHHH---------------------------HHHhcccccC-cHHHHH
Q 043923 263 RVHIVYSLSKDLGL----PGFRVGAIYSNDDMVVAA---------------------------ATKMSSFGLV-SSQTQY 310 (469)
Q Consensus 263 ~~i~i~S~SK~~g~----~GlRiG~li~~~~~~~~~---------------------------~~~~~~~~~~-s~~~q~ 310 (469)
-.|+++ .+|.||. .|--.|++.+.++..++. +++.....+. +.....
T Consensus 246 aDi~vg-~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~ 324 (939)
T TIGR00461 246 ADIVLG-SSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLL 324 (939)
T ss_pred CcEEee-CCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHH
Confidence 445443 3444443 355577776644322221 0000111111 111111
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEE--EEecccccccCChhHHHHHHHHHHHhCC
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC--WVDMRHLLRSNTFEAEMELWKKIVYDVK 388 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~--~v~~~~~~~~~~~~~~~~l~~~ll~~~G 388 (469)
++.+.+.-..+..+-+++..++...+..++.+.|++.|+++..+ .+|= .++++. .+..++.++++ +.|
T Consensus 325 a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~-------~~~~~i~~~~~-~~g 394 (939)
T TIGR00461 325 ANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN-------GISSELLKAAE-EFN 394 (939)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC-------CCHHHHHHHHH-HCC
Confidence 11111110011133466667777778888999999999887654 3442 233321 11234566665 569
Q ss_pred eEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHHH
Q 043923 389 LNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRLK 425 (469)
Q Consensus 389 I~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~ 425 (469)
|.++.. ..+.+++|+... ++++++.+++.+.
T Consensus 395 i~l~~~------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 395 INLRAV------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred Ceeeec------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 997752 245799999874 8999999999885
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-06 Score=83.15 Aligned_cols=178 Identities=20% Similarity=0.143 Sum_probs=122.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEE-----EccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFL-----LPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl-----~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
..+.++++|..+.|+..++.++..++..|+ ++ +..+++..+++.. |++++.+-.... ....+++.+|.+
T Consensus 82 ~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~-gg~~~v~d~~~~a-G~~l~EvG~tn~----t~~~d~~~AIne 155 (395)
T COG1921 82 GAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVE-GGAFRVPDIIRLA-GAKLVEVGTTNR----THLKDYELAINE 155 (395)
T ss_pred chhheeeECCcHHHHHHHHhhhccCCeEEEEcccccc-CCCCChhHHHHHc-CCEEEEecccCc----CCHHHHHHHhcc
Confidence 468899999999999999999977554443 33 5777788888888 999999975422 367889999986
Q ss_pred HHhcCCceeEEEEecCCC-CCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCe
Q 043923 185 AQKRHLKVKGVLVTNPSN-PLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~N-PtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (469)
++++++-..-+| +.=..++.++ ++++|+++|+++++|.+....+- ..+.+..++. .+.
T Consensus 156 ------~ta~llkV~s~~~~f~~~l~~~~---l~~ia~~~~lpvivD~aSg~~v~---~e~~l~~~la---------~Ga 214 (395)
T COG1921 156 ------NTALLLKVHSSNYGFTGMLSEEE---LVEIAHEKGLPVIVDLASGALVD---KEPDLREALA---------LGA 214 (395)
T ss_pred ------CCeeEEEEeeccccccccccHHH---HHHHHHHcCCCEEEecCCccccc---cccchhHHHh---------cCC
Confidence 788776655544 3323456555 88888899999999999875321 1123333433 256
Q ss_pred EEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-cc-cccCcHHHHHHHHHHhc
Q 043923 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SS-FGLVSSQTQYLLSALLS 317 (469)
Q Consensus 264 ~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~-~~~~s~~~q~~~~~~l~ 317 (469)
.++++|--|.+ .|.+.|.|++.++.+ ..+++. .. .+.+..+...++.++|+
T Consensus 215 DLV~~SgdKll--gGPqaGii~GkKelI-~~lq~~~l~Ralrv~K~tla~l~~aLe 267 (395)
T COG1921 215 DLVSFSGDKLL--GGPQAGIIVGKKELI-EKLQSHPLKRALRVDKETLAALEAALE 267 (395)
T ss_pred CEEEEecchhc--CCCccceEechHHHH-HHHHhhhhhhhhhcCcHhHHHHHHHHH
Confidence 67888999988 577899999965555 333322 11 12355555555555554
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-06 Score=81.59 Aligned_cols=299 Identities=14% Similarity=0.130 Sum_probs=156.9
Q ss_pred CCcEEEeCChHH-HHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC-CCCcccCHHHHHHHHHHHH
Q 043923 111 TSKIVLTAGATS-ANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS-LNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 111 ~~~i~~t~G~~~-al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~ 186 (469)
....++++.+|. .+.+.+.++. ..++.|+.+.-.+.....++..+ |.+++.||... .+....|++.+++.+++.
T Consensus 74 ~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~A-Gl~~~vV~~~~~~d~l~td~~~ie~~i~~~- 151 (389)
T PF05889_consen 74 VKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERA-GLEPVVVENVLEGDELITDLEAIEAKIEEL- 151 (389)
T ss_dssp HCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHT-T-EEEEE-EEEETTEEEEHHHHHHHHHHHH-
T ss_pred ccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhc-CCeEEEeeccCCCCeeeccHHHHHHHHHHh-
Confidence 345666666554 3444555553 46788888877655555666666 99999988532 233445688888888653
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++...+.+++.++--.|... +++++|+++|++||+..|+-.||+ ..... .+..+-... ......++
T Consensus 152 --G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYg---vQ~~~--~~~~i~~a~-----~~GRvda~ 217 (389)
T PF05889_consen 152 --GADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYG---VQSSK--CMHLIQQAW-----RVGRVDAF 217 (389)
T ss_dssp --CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTT---TT-HH--HHHHHHHHH-----HHSTCSEE
T ss_pred --CCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchh---hhHHH--HHHHHHHHH-----hcCCccee
Confidence 44666778887765555553 368889999999999999999997 32221 111111100 01134567
Q ss_pred EccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCc--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDK--KFTQNYISENKKRLKQRHRKLVSGL 344 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~l~~~L 344 (469)
+.|.-|.| +-+..-+.+.++++.......+.-+--...++.......++.-+ .| ...+.++.+.+....+.+.+.-
T Consensus 218 vqS~dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~erl~~~a 295 (389)
T PF05889_consen 218 VQSTDKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGY-GALLKERKASFPYLKERLKKWA 295 (389)
T ss_dssp EEEHHHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999 56655566667666555444432211112333333444443322 22 3334444444444444444444
Q ss_pred HhcCCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCe---E-EeCCCCCCC-----CCCCeEEEEe-ecCC
Q 043923 345 EKAGISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKL---N-ISPGSSCHC-----TEPGWFRVCF-ANMS 413 (469)
Q Consensus 345 ~~~g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI---~-v~pg~~f~~-----~~~~~iRi~~-~~~~ 413 (469)
++.+-.+.. |....-+.+.++....... .+. .++-..|...|| . |.|+..+.. ....|+-++- -.++
T Consensus 296 ee~~e~ll~~p~N~is~a~tl~~l~~~~~-k~~-~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~ 373 (389)
T PF05889_consen 296 EEVGERLLETPRNHISMAFTLDTLYEISQ-KDG-TFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMT 373 (389)
T ss_dssp HHTTEEBSSSTT-SSEEEEE-TTCCTCCS-SHH-HHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--
T ss_pred HHhhhhhcCCCCCCeeEEEECccchhhcc-chh-hhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCC
Confidence 445533332 2222344456654322221 222 344444556665 3 333322211 1125777733 2369
Q ss_pred HHHHHHHHHHHHHHHH
Q 043923 414 EDTLKLSMQRLKAFVD 429 (469)
Q Consensus 414 ~e~i~~~l~~L~~~l~ 429 (469)
+||++.++++|+++++
T Consensus 374 ~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 374 REEVDYFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=80.84 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=128.7
Q ss_pred ccccccCCC-CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCC-CcChHHH--
Q 043923 76 FRELALFQD-YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY-YPGFDRD-- 151 (469)
Q Consensus 76 ~~~~~~Y~~-~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~-y~~~~~~-- 151 (469)
+.....|+. .-|.+.|.+..|+-++.... .=..-+ -++|+||..++..+++|||+++...-. |....+.
T Consensus 54 f~~stGYGydD~GRdtLe~vyA~vf~aE~a------~VRpq~-isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG 126 (416)
T COG4100 54 FTGSTGYGYDDLGRDTLERVYAQVFGAEAA------LVRPQI-ISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIG 126 (416)
T ss_pred cCCCCCCCccccchhHHHHHHHHHhccccc------eeeeee-ecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhc
Confidence 344455542 24777788888887762110 011223 356789999999999999998866543 5444433
Q ss_pred --------HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCC-CCCCCCCCHHHHHHHHHHHHh
Q 043923 152 --------LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS-NPLGTTMSRNELNLLVNIITE 222 (469)
Q Consensus 152 --------~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~-NPtG~~~s~e~l~~l~~~~~~ 222 (469)
++.. |+....+|+..++ .+|.+.+..++++ ++|+|-+.... .-.--.++.+++++++++.++
T Consensus 127 ~rg~~~gSL~df-gi~Y~~v~Lt~~g--kiD~~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~ 197 (416)
T COG4100 127 LRGEGQGSLKDF-GIKYKAVPLTADG--KIDIQAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKE 197 (416)
T ss_pred cCCCCcccHHHh-CcceeecccccCC--cccHHHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHh
Confidence 3334 7888889987544 6899999999986 89988776431 111224789999999999987
Q ss_pred c--CeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcce--EEEEEecCHHHHHHHHHh
Q 043923 223 K--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFR--VGAIYSNDDMVVAAATKM 298 (469)
Q Consensus 223 ~--~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlR--iG~li~~~~~~~~~~~~~ 298 (469)
- ++++++|.+|.+++-..++ . .-+..+..+|+-|.-| .|+- -||+.+.++.+.++.-++
T Consensus 198 inpn~ivFVDNCYGEFvE~~EP--t--------------~vGaDliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~~yRl 260 (416)
T COG4100 198 INPNVIVFVDNCYGEFVEEKEP--T--------------HVGADLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAAAYRL 260 (416)
T ss_pred cCCCEEEEEeccchhhhhccCc--c--------------ccchhhhccceeeCCC-CceeeccceeechHHHHHhhceee
Confidence 5 7999999999996433332 1 1244566788888776 4432 279998777776665555
Q ss_pred ccc
Q 043923 299 SSF 301 (469)
Q Consensus 299 ~~~ 301 (469)
..+
T Consensus 261 TaP 263 (416)
T COG4100 261 TAP 263 (416)
T ss_pred ecC
Confidence 444
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-06 Score=78.10 Aligned_cols=293 Identities=14% Similarity=0.176 Sum_probs=164.4
Q ss_pred CCcEEEeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChHHHH-hhh-----CC-----CEEEE-eecc--CCCCcc-
Q 043923 111 TSKIVLTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFDRDL-KWR-----TG-----VEIVP-IQCT--SLNGFQ- 172 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~~-~~~-----~g-----~~~~~-v~~~--~~~~~~- 172 (469)
-+-++++|+++||..++++.. .+..| |++.+-.|.++.... ... .| -+.+. .|++ ..+.|.
T Consensus 102 Lsvc~F~NSGSEANDLALRLAR~ftkhqD-vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~ 180 (452)
T KOG1403|consen 102 LSVCFFVNSGSEANDLALRLARNFTKHQD-VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRD 180 (452)
T ss_pred ceEEEEecCCchhhHHHHHHHHhhcccCc-eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccccccc
Confidence 456789999999999988774 44556 455555665543221 110 01 11111 1211 011111
Q ss_pred ----------cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCH-HHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 173 ----------ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSR-NELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 173 ----------~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~-e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.=.+.+++.+++...++.++.+.+-.+-+.-.|+++|+ .-.+++++..+.+|.+.|.||+..++.--+.
T Consensus 181 ~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~ 260 (452)
T KOG1403|consen 181 KMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGS 260 (452)
T ss_pred ccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccch
Confidence 11255667777666666666655544446667776655 4678899999999999999999987422233
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-----hcccccCcHHHHHHHHHH-
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQYLLSAL- 315 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~- 315 (469)
.+.+..- ++-+--+-++.|.+| .|-.++.++. .+.+.+++.. +.+++ .++.+-+++.+.
T Consensus 261 hyWafq~------------y~fiPDIVtmgKpmG-NGhPVa~Vat-tkeIA~Af~atgv~YFNTyG-GnPVsCAv~laVm 325 (452)
T KOG1403|consen 261 HYWAFQT------------YNFIPDIVTMGKPMG-NGHPVAAVAT-TKEIAQAFHATGVEYFNTYG-GNPVSCAVGLAVM 325 (452)
T ss_pred hhhhhhh------------hccccchheecccCC-CCCeeeEEec-cHHHHHHhccccceehhccC-CCchhHHHHHHHH
Confidence 3222211 122222347889999 9999999998 5667766643 23344 455555544444
Q ss_pred --hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCceec--CCceEEEEEeccccc--ccCChhHHHHHHHHHHHhC
Q 043923 316 --LSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLK--SNAGLFCWVDMRHLL--RSNTFEAEMELWKKIVYDV 387 (469)
Q Consensus 316 --l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~v~~--~~~g~~~~v~~~~~~--~~~~~~~~~~l~~~ll~~~ 387 (469)
++++++ +++.++.- +.|...|+++ ..++++ ...|+|+-+++-..- +..+.....-+..++-+.+
T Consensus 326 ~v~e~E~L-q~ha~~vG-------~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y 397 (452)
T KOG1403|consen 326 RVCEDENL-QEHAQQVG-------EKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELY 397 (452)
T ss_pred HHHhhhhH-HHHHHHHH-------HHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhh
Confidence 444443 33333333 2233333332 223333 234689988875432 2223344445566777778
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 388 KLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 388 GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
||++..-. +..+-+.|-..- .++++.++.+..|.+++--.
T Consensus 398 ~VLlsaDG----Ph~NilKiKPPmCFneena~e~v~~ld~iLT~m 438 (452)
T KOG1403|consen 398 RVLLSADG----PHRNILKIKPPMCFNEENADEFVLGLDEILTVM 438 (452)
T ss_pred hEEEecCC----CCCceeecCCCcccChhhHHHHHHHHHHHHHHH
Confidence 89886321 123445553321 37788888888887776433
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-05 Score=73.97 Aligned_cols=313 Identities=13% Similarity=0.199 Sum_probs=171.9
Q ss_pred CCcHHHHHHHHHHHHhHcCCCC-----CC-CCCcEEEeCChHHHHHHHHHHh-------cCCC-----------C-EEEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKV-----TF-DTSKIVLTAGATSANETLMFCL-------AEPG-----------E-AFLL 140 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~-----~~-~~~~i~~t~G~~~al~~~~~~l-------~~~g-----------d-~Vl~ 140 (469)
+...+|+..+.+|+++..+... .. +.-.|+.++ ++++..+++.+. .+.+ + .+..
T Consensus 109 Pa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~t-ases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~ 187 (511)
T KOG0628|consen 109 PACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGT-ASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYC 187 (511)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecC-cchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEe
Confidence 4468899999999988755221 00 122344444 344444444332 1122 2 3455
Q ss_pred ccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHH
Q 043923 141 PTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNII 220 (469)
Q Consensus 141 ~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~ 220 (469)
.+-++.+...++... |+++..++.+. +|.++.+.|.++|++-..+|--+ .+++.+-. -||. -..+++.+|..+|
T Consensus 188 SDqahssveka~~i~-~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIP-f~v~at~G-TT~~-ca~D~l~elg~Vc 261 (511)
T KOG0628|consen 188 SDQAHSSVEKACLIA-GVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIP-FFVCATLG-TTSS-CAFDELEELGPVC 261 (511)
T ss_pred cCcccchHHHhHhhc-ceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCcc-EEEEEeec-Cccc-cccccHHHhcchh
Confidence 666788888777666 99999999874 89999999999998755444333 33333222 2333 3567899999999
Q ss_pred HhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEec-----------CH
Q 043923 221 TEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSN-----------DD 289 (469)
Q Consensus 221 ~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~-----------~~ 289 (469)
+++|+++.+|.+|++..|--+.+..+..-++ ...-+-...||++ +.-.-+..+... ++
T Consensus 262 ~~~glWLHVDAAYAGsa~iCpE~r~l~rGie----------~aDSfn~n~hK~~-~vnfDCs~lWvkd~~~~~~~~~vdp 330 (511)
T KOG0628|consen 262 REEGLWLHVDAAYAGSAFICPEFRYLMRGIE----------YADSFNFNPHKWL-LVNFDCSPLWVKDGTKLSRAFNVDP 330 (511)
T ss_pred hhcCEEEEeehhhccccccCHHHHHHhhcch----------hhccccCChhhee-EEeeeeecceeecCceeeeeeecCh
Confidence 9999999999999976555443333222111 1111122334433 222222222221 22
Q ss_pred HHHHHHHH--hccc--ccC------cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-----CCceecC
Q 043923 290 MVVAAATK--MSSF--GLV------SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-----GISCLKS 354 (469)
Q Consensus 290 ~~~~~~~~--~~~~--~~~------s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-----g~~v~~~ 354 (469)
...+.... ...+ |.+ -++-.+...+.+.-..+ ++++ ++ .-.|.+.++++ .+++..+
T Consensus 331 ~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~l-q~~i-------R~-h~~La~~fe~lv~~d~~FE~~~~ 401 (511)
T KOG0628|consen 331 LYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENL-QNYI-------RE-HVRLAKEFETLVRADPRFEIVNK 401 (511)
T ss_pred HhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHH-HHHH-------HH-HHHHHHHHHHHhhcCCcceeecc
Confidence 21111110 1111 111 12223333333322221 2222 21 12233333332 3555444
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC--CHHHHHHHHHHHHHHHHhhc
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM--SEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~--~~e~i~~~l~~L~~~l~~~~ 432 (469)
..==.+++++++.. +....+..++.....|.+.|.+.- +.-.+|++++.. ++++++++.+.|.+......
T Consensus 402 ~~lgLvcFRlk~~N-----~~ne~Ll~~in~~g~i~l~~~~l~---gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~ 473 (511)
T KOG0628|consen 402 RILGLVCFRLKGDN-----EINEALLNRLNSSGRIHLVPASLH---GKFVLRFAVCSPLTNESDIDEAWKIIFEAADELF 473 (511)
T ss_pred cccceeEEeecCCc-----HHHHHHHHHHHhcCcEEEEEeeec---ceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 33124556766431 334567888887878999887642 345799999773 88999999999998877654
Q ss_pred c
Q 043923 433 T 433 (469)
Q Consensus 433 ~ 433 (469)
.
T Consensus 474 ~ 474 (511)
T KOG0628|consen 474 E 474 (511)
T ss_pred h
Confidence 4
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-05 Score=73.01 Aligned_cols=284 Identities=15% Similarity=0.149 Sum_probs=161.7
Q ss_pred CCCC----cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh-HHHHhhhCCCEE---------EEeeccCCCCcccC
Q 043923 109 FDTS----KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF-DRDLKWRTGVEI---------VPIQCTSLNGFQIT 174 (469)
Q Consensus 109 ~~~~----~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~-~~~~~~~~g~~~---------~~v~~~~~~~~~~d 174 (469)
++|+ +|-.-+| +.|...+..+++.|++.|+-.+--..++ .+....- +.++ .++.+++..+ -+|
T Consensus 101 ldp~kWGVNVQp~SG-SPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~-~kkISa~SiyFeSmPYkv~~~TG-~ID 177 (477)
T KOG2467|consen 101 LDPEKWGVNVQPYSG-SPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTP-TKKISATSIYFESMPYKVDPSTG-YID 177 (477)
T ss_pred CCHHHCceeeccCCC-CchhhHHHhhhcCCCCeeeeccCCCCCccccccccC-CceeeeeeeecccCceeeCCCCC-cee
Confidence 5665 3444455 4566778889999999888544322221 1111111 1111 1233455444 479
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 175 ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 175 ~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
.|.|++.-..+ ++++||.... -.-..++... +-++|.+.|++++.|-+|....-...-.++.+++
T Consensus 178 YD~Le~~A~~f-----rPk~iiaG~S--aY~R~~DYaR---~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----- 242 (477)
T KOG2467|consen 178 YDKLEKTATLF-----RPKLIIAGTS--AYSRLIDYAR---FRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----- 242 (477)
T ss_pred hHHHHHHHHhc-----CCcEEEeccc--cchhhccHHH---HHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-----
Confidence 99999887765 8886554311 1223445455 4555558899999999996433333333444444
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecC-----------H---HHHHHHHHhcc---cccCcHHHHHHHHHHhc
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSND-----------D---MVVAAATKMSS---FGLVSSQTQYLLSALLS 317 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~-----------~---~~~~~~~~~~~---~~~~s~~~q~~~~~~l~ 317 (469)
..|+..|.+|++ -|-|-|.|.-.. . .+.+.++..-- .+.+......+++.+|.
T Consensus 243 --------~DiVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALk 312 (477)
T KOG2467|consen 243 --------CDIVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALK 312 (477)
T ss_pred --------cceeeccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHH
Confidence 357788999986 788888886432 0 12222221110 11122222333333333
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee-cCCceEEEEEeccc-ccccCChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL-KSNAGLFCWVDMRH-LLRSNTFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~-~~~~g~~~~v~~~~-~~~~~~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
... ....+.-.+++.++.+.|.+.|.+.|.+.. .......+.+++.. +.+. ..+++.++..+|.+.--.
T Consensus 313 Qa~--tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dG-------arvE~vle~~~I~~NKNt 383 (477)
T KOG2467|consen 313 QAM--TPEFKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDG-------ARVEKVLELCHIALNKNT 383 (477)
T ss_pred hhC--CHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCch-------HHHHHHHHHhhhhhcCCc
Confidence 221 111345566677788999999999998865 34445677788864 2222 245666666677765333
Q ss_pred CCCC---CCCCeEEEEeec-----CCHHHHHHHHHHHHHHHH
Q 043923 396 SCHC---TEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 396 ~f~~---~~~~~iRi~~~~-----~~~e~i~~~l~~L~~~l~ 429 (469)
.++. ..++.+||.... ..++++++..+-|.++++
T Consensus 384 vpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 384 VPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred CCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 3332 236789997633 356888888777776654
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-05 Score=80.81 Aligned_cols=286 Identities=18% Similarity=0.245 Sum_probs=143.0
Q ss_pred ccCCCCC-----CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChHHH
Q 043923 80 ALFQDYH-----GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFDRD 151 (469)
Q Consensus 80 ~~Y~~~~-----g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~ 151 (469)
..|.|++ |..+..-.....+.+..| ++..+.-+-.|++.+-+.+..+. .+.+++|+++.-.|+.+...
T Consensus 95 TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTG----mdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v 170 (429)
T PF02347_consen 95 TAYTPYQPEISQGRLQALFEYQSMICELTG----MDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAV 170 (429)
T ss_dssp CS-STTSGGGBHHHHHHHHHHHHHHHHHHT----SSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHhhC----CCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHH
Confidence 4566643 444433334444444433 44455567777777766665554 23346999999999988775
Q ss_pred Hhhh---CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEE
Q 043923 152 LKWR---TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLI 228 (469)
Q Consensus 152 ~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI 228 (469)
++.. .|++++.++.+..+. .| +.++.+|++.+||. .|.+-+ ++++.++++++|.+++
T Consensus 171 ~~t~a~~~g~~iv~~~~~~~~~--~d--------------~~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~ 230 (429)
T PF02347_consen 171 LRTYAAPLGIEIVEVPLDEDGT--TD--------------DDDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVI 230 (429)
T ss_dssp HHHHCCHCCEEEEEE-BBTTCS--B---------------STTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEE
T ss_pred HHHhhhhCCeEEEEecccccCC--cc--------------ccCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEE
Confidence 4432 399999999875332 22 12899999999985 788755 7779999999999888
Q ss_pred EeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC----CcceEEEEEecCHHHHHH----------
Q 043923 229 SDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL----PGFRVGAIYSNDDMVVAA---------- 294 (469)
Q Consensus 229 ~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~----~GlRiG~li~~~~~~~~~---------- 294 (469)
+ .+--- .... ..+.. ..+-.|++++ +|.||. .|--.|++.+.+..+++.
T Consensus 231 ~-~ad~~-aL~~--l~~Pg------------e~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D 293 (429)
T PF02347_consen 231 V-GADPN-ALGG--LKSPG------------EYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKD 293 (429)
T ss_dssp E-CGGCC-GCCT--C--GG------------GGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEB
T ss_pred E-ecCHH-HHhC--cCChh------------hcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceeccccc
Confidence 6 33321 1111 12222 2245566655 676653 466678887754432221
Q ss_pred -----------------HHHhc--ccccCcHHHH-HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 295 -----------------ATKMS--SFGLVSSQTQ-YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 295 -----------------~~~~~--~~~~~s~~~q-~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
+++-+ +..+.+.... .++..++.. +..+-+++..+....+..++.+.|.+. +..+.
T Consensus 294 ~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~--~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~- 370 (429)
T PF02347_consen 294 ADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAY--LGPEGLREIAERIHLNAHYLAERLKKIYGLPFD- 370 (429)
T ss_dssp CCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSS-
T ss_pred ccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-
Confidence 11111 1111222221 122222222 225557888888888999999999986 33332
Q ss_pred CCceEE--EEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHH
Q 043923 354 SNAGLF--CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRL 424 (469)
Q Consensus 354 ~~~g~~--~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L 424 (469)
..-|| +....+. ....++.++.. ..|+... ....+.+-+|+... ++++|+.+++.+
T Consensus 371 -~~~f~e~v~~~~~~-------~~~~~l~~~~~-~~gl~~~------~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 371 -NPFFFEFVVVFSKD-------KEVEELLKRGI-EGGLNLR------YPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp -SSSBSSEEEEESS--------HHHHHHHHTT-----EEEG------GG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred -CCCceeeeeecCCc-------HHHHHHHHHHH-hcCCCcc------ccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 22232 3222221 11112333333 3354332 12345788998774 889999988764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00031 Score=68.77 Aligned_cols=269 Identities=17% Similarity=0.203 Sum_probs=157.7
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEEccCCCcChHHHHhhh---CCCEEEEeeccCCCCcccCHHHHHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLA---EPGEAFLLPTPYYPGFDRDLKWR---TGVEIVPIQCTSLNGFQITETAIEEAY 182 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~---~~gd~Vl~~~P~y~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~i 182 (469)
++..|--+-.++|.+-++++.+.. .+..+++++.-+|+.+...++.. .|++++.++.+ |++.++++
T Consensus 135 m~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~- 206 (450)
T COG0403 135 LDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA- 206 (450)
T ss_pred CCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-
Confidence 556666777888887777776653 23589999999999998887643 26777776654 56667766
Q ss_pred HHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec-cccccccCCCCccchhhhhhccccccCCcC
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDE-IYSGTVFSSPGFVSIMEILKDRNCENTQVW 261 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~De-ay~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 261 (469)
.+ ..+.++++.+|+ -.|. ..++++++++.++++|.++++=. .-+ +.-- .+. +..
T Consensus 207 ~~-----~~~~gv~vQyP~-~~G~--~~~d~~~l~~~~h~~~al~~v~aDpla---L~LL--~pP------------Ge~ 261 (450)
T COG0403 207 DD-----GDVFGVLVQYPN-TFGI--VEEDLRALIEAAHSAGALVIVAADPLA---LGLL--KPP------------GEF 261 (450)
T ss_pred cc-----cCeEEEEEecCC-CCCc--cchhHHHHHHHHhhcCCEEEEEechhH---hhcc--CCc------------ccc
Confidence 32 277889999887 4663 33468889999999988776522 111 1100 111 133
Q ss_pred CeEEEEccCc---cccCCCcceEEEEEecCHHHHH---------------------------HHHHhc--ccccCcHHHH
Q 043923 262 NRVHIVYSLS---KDLGLPGFRVGAIYSNDDMVVA---------------------------AATKMS--SFGLVSSQTQ 309 (469)
Q Consensus 262 ~~~i~i~S~S---K~~g~~GlRiG~li~~~~~~~~---------------------------~~~~~~--~~~~~s~~~q 309 (469)
+-.|++++.. =-+|+.|-.+||..+.++..++ .+++-+ +..+.+....
T Consensus 262 GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLl 341 (450)
T COG0403 262 GADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALL 341 (450)
T ss_pred CCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHH
Confidence 5667777653 3455667788888774443222 111111 1111122111
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCceecCCceEEE--EEecccccccCChhHHHHHHHHHHH
Q 043923 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFC--WVDMRHLLRSNTFEAEMELWKKIVY 385 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~v~~~~~g~~~--~v~~~~~~~~~~~~~~~~l~~~ll~ 385 (469)
+.++++.. .-+..+-+++...+..+...++.+.|++. |+++... .||- .++++. .....+.++..
T Consensus 342 A~~As~y~-~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~-------~~~~~l~~~~~- 410 (450)
T COG0403 342 ALAASMYA-VYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPE-------EVAEALLAAAI- 410 (450)
T ss_pred HHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecch-------hHHHHHHHHHH-
Confidence 11111111 11124456777778888889999999965 5666544 4553 344442 11123334433
Q ss_pred hCCeEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHHHHH
Q 043923 386 DVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRLKAF 427 (469)
Q Consensus 386 ~~GI~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~~~ 427 (469)
..|+.++.-. +..+=+++... ++++++.+++.+...
T Consensus 411 ~~G~~L~~~~------~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 411 AGGINLRRVD------ADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred hcCCceeeec------CCceEEEeecccCHHHHHHHHHHHhhh
Confidence 4588776322 33566777653 788998888887654
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0001 Score=71.70 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=160.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CC-----C-----CEEEEc-cCCCcChHHHHhhhCC---CEEEEeeccCCCCcccC
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EP-----G-----EAFLLP-TPYYPGFDRDLKWRTG---VEIVPIQCTSLNGFQIT 174 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~-----g-----d~Vl~~-~P~y~~~~~~~~~~~g---~~~~~v~~~~~~~~~~d 174 (469)
.|.|+--.|+...++++.-+=- -| | +-|+.. +-+|.++..++... | -.++.|+.++.+ .++
T Consensus 160 ~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l-g~gtd~c~~v~t~e~G--km~ 236 (510)
T KOG0629|consen 160 GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL-GLGTDHCIKVKTDERG--KMI 236 (510)
T ss_pred CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh-ccCCceeEEecccccC--ccc
Confidence 4666665666666665543310 11 1 334433 44566677777776 7 678888888655 689
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 175 ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 175 ~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
+++||+.|-+...++..+-.|-.+.-....|..= ++..++++|++|++++.+|.||.+..+-...+.....-
T Consensus 237 ~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFD---dL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~G----- 308 (510)
T KOG0629|consen 237 PDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFD---DLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTG----- 308 (510)
T ss_pred hHHHHHHHHHHHhcCCCCeEEEecCCceeeeccC---cHHHHHHHHHhcCEEEEeecccccccccChhhHhhccC-----
Confidence 9999999976554443343333332344556664 47779999999999999999998743322222221111
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc---------cc-------------c-cCcHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---------SF-------------G-LVSSQTQYL 311 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~---------~~-------------~-~~s~~~q~~ 311 (469)
....--+.++.+|.+| +.+.++.++...+-+.+.-+++. .+ + .+..+-.+.
T Consensus 309 -----iera~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWl 382 (510)
T KOG0629|consen 309 -----IERANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWL 382 (510)
T ss_pred -----ccccCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHH
Confidence 1122345578999999 77888877765443322111110 00 0 111222222
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-eec--CCceEEEEEecccccccCCh--hHHH-------H
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI-S-CLK--SNAGLFCWVDMRHLLRSNTF--EAEM-------E 378 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~-~-v~~--~~~g~~~~v~~~~~~~~~~~--~~~~-------~ 378 (469)
.-.+=.... .++..+..-+..+++.+.+++.+. . +.. |+..++.+--+|...+.... +... .
T Consensus 383 mwkaKG~~G-----fe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPk 457 (510)
T KOG0629|consen 383 MWKAKGTQG-----FEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPK 457 (510)
T ss_pred HHHhccccc-----HHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcH
Confidence 222212222 355666777788999999998742 2 222 44333332233332222110 1110 1
Q ss_pred HHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC--CHHHHHHHHHHHHHHH
Q 043923 379 LWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM--SEDTLKLSMQRLKAFV 428 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~--~~e~i~~~l~~L~~~l 428 (469)
+-..+++ .|-... |.......++++|+.++.. +.++++-+++.|..+-
T Consensus 458 IK~~Mm~-~Gt~Mi-~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 458 IKERMMK-KGTTMI-GYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred HHHHHHh-ccceee-EecccccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 1123333 354443 1111112467999999763 7889999998887653
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.9e-05 Score=71.61 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcc
Q 043923 175 ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 253 (469)
Q Consensus 175 ~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~ 253 (469)
++++++.|.++.++...+.++|+.--+.-.|. ..|++-.+.|-++|++|++.+|+||+..+..-.+ .+...-.+ . +
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG-k~WaHehw-~-l 331 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG-KFWAHEHW-N-L 331 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC-ceeeehhc-C-C
Confidence 57778888777666556666665533565664 6799999999999999999999999996532111 11111111 0 0
Q ss_pred ccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH-HHHHhcccccCcHHHHHH---HHHHhcCchhhHHHHHHH
Q 043923 254 NCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA-AATKMSSFGLVSSQTQYL---LSALLSDKKFTQNYISEN 329 (469)
Q Consensus 254 ~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~-~~~~~~~~~~~s~~~q~~---~~~~l~~~~~~~~~~~~~ 329 (469)
+.+..++ +|||-|- .| ||... +..... ..+.+.+ |+..+.-... +...+++.++
T Consensus 332 -----~~PpD~v---TFSKK~q-~g---Gffh~-~~frpn~pYrifNT-WmGdP~k~lll~~vv~~I~~~~L-------- 389 (484)
T KOG1405|consen 332 -----DSPPDVV---TFSKKFQ-TG---GFFHD-EEFRPNEPYRIFNT-WMGDPSKNLLLEEVVQEIKREDL-------- 389 (484)
T ss_pred -----CCCccce---ehhhhhh-cC---ccccC-cccCCCchHHHhhh-hcCChHHHHHHHHHHHHHhHHHH--------
Confidence 1223333 8999994 65 66654 222222 2222333 3333322222 3333333332
Q ss_pred HHHHHHHHHHHHHHHHhc----C--CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 330 KKRLKQRHRKLVSGLEKA----G--ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~----g--~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
....+..-+.|...|.++ + +.-.... |-|+.++++..... ..++ .+++-+||.+--+ +..
T Consensus 390 l~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGr-GTF~a~d~ps~~~R------dk~i-~~~~~nGv~~GGC------g~~ 455 (484)
T KOG1405|consen 390 LNNVAHVGKALLKGLLELQAKYPGKINNLRGR-GTFIAWDCPSGSIR------DKLI-LIARLNGVNLGGC------GDK 455 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhhhccccc-ceEEEEeCCChHHH------HHHH-HHHHHcCceeccc------ccc
Confidence 222233334455555443 1 2222233 56888888864221 1333 4456678877422 244
Q ss_pred eEEEEeecC-CHHHHHHHHHHHHHHHHh
Q 043923 404 WFRVCFANM-SEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 404 ~iRi~~~~~-~~e~i~~~l~~L~~~l~~ 430 (469)
.+|+-.+.+ .+...+-.++++.+.+..
T Consensus 456 siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 456 SIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred eeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 588877664 888899999999888764
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=85.10 Aligned_cols=213 Identities=20% Similarity=0.193 Sum_probs=45.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC------hHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHH
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG------FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQ 183 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~------~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 183 (469)
..+..+++|+...|+.+++.++. +|..|++..-.-.. +...++.. |++++.|-..+. -.+++++++|+
T Consensus 61 gAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip~vm~~s-Ga~lvEVGttN~----t~~~Dye~AI~ 134 (367)
T PF03841_consen 61 GAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIPDVMRQS-GARLVEVGTTNR----THLSDYEKAIT 134 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccccccccccc-cccccccccccc----ccccccccccc
Confidence 36778888888899998888885 45556655432211 33456656 999999886532 35788999998
Q ss_pred HHHhcCCceeEEEEecCCCCC--CCCCCHHHHHHHHHHHHhcCeEEEEeccccccc----cCCCCccchhhhhhcccccc
Q 043923 184 LAQKRHLKVKGVLVTNPSNPL--GTTMSRNELNLLVNIITEKNIHLISDEIYSGTV----FSSPGFVSIMEILKDRNCEN 257 (469)
Q Consensus 184 ~~~~~~~~~~~vvl~~P~NPt--G~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~----~~~~~~~s~~~~~~~~~~~~ 257 (469)
+ ++.+++..+++|-. |.. ..-.++++++++++|++++|+|-.-+.+. |+-+.-+++...+.
T Consensus 135 e------~Ta~ll~Vh~Sn~~i~GFt-~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~------ 201 (367)
T PF03841_consen 135 E------NTAALLKVHTSNFRIQGFT-GEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA------ 201 (367)
T ss_dssp ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC------
T ss_pred c------ccccccccccccccccccc-ccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh------
Confidence 7 89999888888753 211 11146668889999999999998774321 11111234444432
Q ss_pred CCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCc---hh------hHHHH
Q 043923 258 TQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDK---KF------TQNYI 326 (469)
Q Consensus 258 ~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~---~~------~~~~~ 326 (469)
.+..+++.|-.|.+| |-..|.|++..+ +.+.+++-. -...+.-....++.+.|... +. ..+.+
T Consensus 202 ---~GaDlV~fSGdKlLG--GPQaGiI~Gkk~-lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml 275 (367)
T PF03841_consen 202 ---AGADLVTFSGDKLLG--GPQAGIIVGKKE-LIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRML 275 (367)
T ss_dssp ---CT-SEEEEETTSSSS--S-S-EEEEEEHH-HHHHHHHHHHTTT-B--HHHHHHHHHHHHH-----------------
T ss_pred ---cCCCEEEEECCCcCC--CCCeEEEEeCHH-HHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 356788889999985 556899999544 444444321 11225555555544444321 00 12223
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 043923 327 SENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~~ 347 (469)
....+.++++.+.|...|...
T Consensus 276 ~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 276 TQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 444455666666666666543
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=72.22 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=144.0
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEEccCCCcChHHHHhhh---CCCEEEEeeccCCCCcccCHHHHHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLA---EPGEAFLLPTPYYPGFDRDLKWR---TGVEIVPIQCTSLNGFQITETAIEEAY 182 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~---~~gd~Vl~~~P~y~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~i 182 (469)
++..|--+-.|++.+-+.++.+.. ....+|+++.-.++.+...++.. .|++++. +++++.+
T Consensus 139 m~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~ 205 (954)
T PRK12566 139 LDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLA 205 (954)
T ss_pred chhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcC
Confidence 344455555566655554443332 12468999999999887766543 2666653 2223322
Q ss_pred HHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCC
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN 262 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 262 (469)
.+ ++.+|++.+|+. .|.+- +++++++++++.|.++|+ .+.- +-+.-- .+.. ..+
T Consensus 206 ~~------~~~~v~vq~P~~-~G~i~---d~~~i~~~~h~~gal~~~-~~d~-laL~ll--~~Pg------------e~G 259 (954)
T PRK12566 206 AH------AVFGALLQYPDT-HGEIR---DLRPLIDQLHGQQALACV-AADL-LSLLVL--TPPG------------ELG 259 (954)
T ss_pred CC------CEEEEEEECCCC-ceEEc---cHHHHHHHHHHcCCEEEE-EeCH-HHHhCC--CChh------------hcC
Confidence 22 678889999974 78874 577799999999887663 2221 001111 1111 335
Q ss_pred eEEEEc---cCccccCCCcceEEEEEecCHHHHHH---------------------------HHHhc--ccccCcHHHHH
Q 043923 263 RVHIVY---SLSKDLGLPGFRVGAIYSNDDMVVAA---------------------------ATKMS--SFGLVSSQTQY 310 (469)
Q Consensus 263 ~~i~i~---S~SK~~g~~GlRiG~li~~~~~~~~~---------------------------~~~~~--~~~~~s~~~q~ 310 (469)
-.|+++ +|+=-+|+.|--.||+.+.++..++. +++-+ +..+.+....+
T Consensus 260 ADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A 339 (954)
T PRK12566 260 ADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLA 339 (954)
T ss_pred CcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHH
Confidence 556665 44455556677788888754433221 10001 11111111111
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeE
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~ 390 (469)
.++++... -+..+-+++..++...+..+|.+.|.+.|+++... .||=-+.+.-.. ...++.+..+ +.||-
T Consensus 340 ~~a~~Y~~-~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~~~------~~~~~~~~a~-~~~~n 409 (954)
T PRK12566 340 NIAGFYAV-YHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEVGG------AQAAIIESAE-AARIN 409 (954)
T ss_pred HHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEccC------CHHHHHHHHH-HCCCe
Confidence 11111111 11133456666777778889999999989876543 355433333110 1224455544 55888
Q ss_pred EeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHH
Q 043923 391 ISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLK 425 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~ 425 (469)
++-- +++.+.||+.. .+.++++.++..+.
T Consensus 410 ~r~~------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 410 LRIL------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred eEEe------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 7732 23568888866 48899998888885
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.01 Score=57.37 Aligned_cols=332 Identities=14% Similarity=0.113 Sum_probs=172.4
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
.+.+||.|...+|++.+.++-+..-.- .-.|.+.++-.++ .+-..++-+...+.+++.++ ++-+.+-+++-.
T Consensus 5 ~~~nFsaGPa~lp~~vL~~a~~e~~~~---~g~g~svme~SHR---sk~~~~v~~~a~~~lreLl~--iPd~Y~VlflqG 76 (365)
T COG1932 5 RVYNFSAGPAALPPEVLQQAQKELLDW---NGLGMSVMEISHR---SKEFKNVLEEAEKDLRELLN--IPDDYKVLFLQG 76 (365)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhh---ccCCcceeeeccc---cHHHHHHHHHHHHHHHHHhC--CCCCceEEEEcC
Confidence 457899998888887666655442111 0011122222222 11224444444555555544 333333455566
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH-HhhhCCC--EEEEeeccCCCCcc--cCHHHHHHHHHHHHhcCCcee
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRD-LKWRTGV--EIVPIQCTSLNGFQ--ITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~-~~~~~g~--~~~~v~~~~~~~~~--~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++.....+...|+..+.+-.+..-.|..+... ++.. +. .+..... ...+|. ++++... +.+ +..
T Consensus 77 Gat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~-~~~~~~~~~~~-~~~~~~~iP~~~~~~--~~~------~~a 146 (365)
T COG1932 77 GATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKV-GKQPKLIDARI-EEAGYGSIPDLSKWD--FSD------NDA 146 (365)
T ss_pred ccHHHHHHHHHhhhcccCceeEeeeehhHhHHHHHHHh-cccccccccce-eccCccCCCChhhcc--cCC------Ccc
Confidence 689999999999876654313334445444322 2223 32 2222221 122222 3333332 111 233
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
.|.+|.-..-+|.-++... .+.. +.++|.|-...- +..+ .... .-.++..+.-|.
T Consensus 147 yv~~~~NeTi~Gv~v~~~p--~~~~-----~~~~v~D~SS~i--lsr~--iDvs--------------k~dviyagaQKn 201 (365)
T COG1932 147 YVHFCWNETISGVEVPELP--DIGS-----DGLLVADASSAI--LSRP--IDVS--------------KYDVIYAGAQKN 201 (365)
T ss_pred EEEEecCCcccceEccCCC--CCCC-----CceEEEecccHH--hcCC--CChh--------------HcceEEEehhhc
Confidence 4666633345687766211 1111 267888876542 2221 2222 233556789999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHH--------------hcccccCcHHHHHHHHH---Hh-cCchhhHHHHHHHHHHHHH
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATK--------------MSSFGLVSSQTQYLLSA---LL-SDKKFTQNYISENKKRLKQ 335 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~--------------~~~~~~~s~~~q~~~~~---~l-~~~~~~~~~~~~~~~~l~~ 335 (469)
+|-.| ++.++.+++.+...-.. -+.+.+++.++.+.+.. ++ ..+. ++...++-++
T Consensus 202 lGpaG--ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG-----l~~~~~rn~~ 274 (365)
T COG1932 202 LGPAG--LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGG-----LEALEARNQA 274 (365)
T ss_pred cCccc--eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHH
Confidence 99888 88888866554332111 01233344444443322 22 2333 3555566667
Q ss_pred HHHHHHHHHHhcCCc---ee-cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec
Q 043923 336 RHRKLVSGLEKAGIS---CL-KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 411 (469)
Q Consensus 336 ~~~~l~~~L~~~g~~---v~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~ 411 (469)
+.+.|.+.+.+.++- +. ...+-+-+.+.+... +-+..+++.+ +++|+...-|.. ..+.+|+++..
T Consensus 275 ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~------~ld~~fv~ea-e~~gl~~lkGhr----~vgGmRasiyn 343 (365)
T COG1932 275 KAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA------ELDKGFVAEA-EAAGLIYLKGHR----SVGGLRASIYN 343 (365)
T ss_pred HHHHHHHHHHhCCccccccchhhccceeEEEEcCcH------HHHHHHHHHH-HHcCCceecccc----CCCceeeeeec
Confidence 778888888876542 21 223445666666521 2233445544 456777766632 23449999976
Q ss_pred -CCHHHHHHHHHHHHHHHHhh
Q 043923 412 -MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 412 -~~~e~i~~~l~~L~~~l~~~ 431 (469)
++.++++.+++-++.+.++.
T Consensus 344 A~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 344 AVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 68888888888887776653
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0014 Score=60.14 Aligned_cols=307 Identities=17% Similarity=0.201 Sum_probs=150.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCC-CEEEEccCCCcChHHHHhhhCCCEEEEee-ccCCCCcccCHHHHHHHHHHHH
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPG-EAFLLPTPYYPGFDRDLKWRTGVEIVPIQ-CTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~-~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
..++++.--+-..+.+.+..+. +|. +.|+-+.-.-......+-.+ |.+++-+. +.+.+...-|++.++..+++.
T Consensus 76 ~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~a-gfepiiie~i~d~d~l~tdleav~~~iee~- 153 (432)
T KOG3843|consen 76 ANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHA-GFEPIIIENILDGDELITDLEAVEAIIEEL- 153 (432)
T ss_pred hceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhc-CCCceeeeccccchHHHHhHHHHHHHHHHh-
Confidence 4455544444445666666664 333 33443332222233334445 88876554 223334556788888888764
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
...-|+........=..-+++.+++|+.+|..|++.-|+..+|+ ..... .+..+...-. -....-+
T Consensus 154 ----g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayg---lqsee--~i~~iaa~~~-----~grida~ 219 (432)
T KOG3843|consen 154 ----GEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYG---LQSEE--CIHKIAAAAE-----CGRIDAF 219 (432)
T ss_pred ----CCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccc---cchHH--HHHHHHHHhh-----hccHHHH
Confidence 33322222111111122367889999999999999999999997 33332 2222221100 1123456
Q ss_pred EccCccccCCCcceEE-EEEe-cCHHHHHHHHHhcccccCcHHHHHHHHHHhcCc--hhhHHHHHHHHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVG-AIYS-NDDMVVAAATKMSSFGLVSSQTQYLLSALLSDK--KFTQNYISENKKRLKQRHRKLVS 342 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG-~li~-~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~l~~ 342 (469)
+.|+-|.|-.| +| .+++ -++..++.+.++-+-...++++...+..+|..+ .+ .+.+.++.+.+.+.+..+..
T Consensus 220 vqsldknf~vp---vggaiia~fk~n~iq~iak~ypgrasa~ps~dllitll~~gqn~f-~e~~~eqkemf~~l~~ki~~ 295 (432)
T KOG3843|consen 220 VQSLDKNFMVP---VGGAIIAAFKDNFIQEIAKMYPGRASASPSLDLLITLLSLGQNAF-KELFGEQKEMFLKLRNKIIK 295 (432)
T ss_pred HHHhhhcceee---cchhHhhHhHHHHHHHHHHhCCCccccCccHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 78999999544 33 3333 233344444443332224445555555555433 23 34444555555555555554
Q ss_pred HHHhcCCcee-cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCe---EEeCCCCC------------CCCC----C
Q 043923 343 GLEKAGISCL-KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKL---NISPGSSC------------HCTE----P 402 (469)
Q Consensus 343 ~L~~~g~~v~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI---~v~pg~~f------------~~~~----~ 402 (469)
.-+..|--++ .|+.-.-+...++.....+ +....++-.+|-..|| .|.|.... +... -
T Consensus 296 ~ae~~~e~l~~~p~n~is~amtl~ti~~~k--~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~ 373 (432)
T KOG3843|consen 296 FAEAIGECLLETPENEISLAMTLKTIDEAK--DKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHC 373 (432)
T ss_pred HHHHhhhhhhcCCCchhhhhhhhccCChHH--hhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCch
Confidence 4444442221 1222111112222111111 1122344444444454 45553322 1110 1
Q ss_pred CeEEEEee-cCCHHHHHHHHHHHHHHHHhhcccccccc
Q 043923 403 GWFRVCFA-NMSEDTLKLSMQRLKAFVDSITTTLHNQS 439 (469)
Q Consensus 403 ~~iRi~~~-~~~~e~i~~~l~~L~~~l~~~~~~~~~~~ 439 (469)
+|+-++.+ ..++.++++++.||...+...++..+..+
T Consensus 374 ~yln~a~aigm~~hdld~~~~rl~~~~a~~~ke~aked 411 (432)
T KOG3843|consen 374 AYLNAACAIGMKDHDLDEFFNRLDRCLAAFRKELAKED 411 (432)
T ss_pred hHhhHHHhcCCcHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 23333221 14789999999999988877777655443
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.016 Score=59.64 Aligned_cols=306 Identities=15% Similarity=0.189 Sum_probs=169.3
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE--eCChH---HHHHHHHHHh-cCCC----CEEEEccCCCcChHHHHhhh
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVL--TAGAT---SANETLMFCL-AEPG----EAFLLPTPYYPGFDRDLKWR 155 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~--t~G~~---~al~~~~~~l-~~~g----d~Vl~~~P~y~~~~~~~~~~ 155 (469)
+|+.++-+.+.+.+....| -|++.+ .+|++ .++. ++++. ...| ...++|.-.+..-..++.++
T Consensus 578 qGY~~lf~~Le~~Lc~iTG------~D~~s~QPNsGA~GEYaGL~-~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Ma 650 (1001)
T KOG2040|consen 578 QGYQQLFTELEKDLCEITG------FDSFSLQPNSGAQGEYAGLR-VIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMA 650 (1001)
T ss_pred hhHHHHHHHHHHHhheeec------ccceeecCCCCcccchhhHH-HHHHHHHhccCCcceeEEEeecccCCChhhHHhc
Confidence 6889999999988875533 345444 33332 3343 33443 3334 34566666777767777777
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
|.++++|.++..+ .+|..+|++..++... +..++.++-|+. .|.. .+.++.++++.++||.-|..|.+-..
T Consensus 651 -gmkvvpV~~~~~G--~id~~dLk~kaekh~~---~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQVYlDGANMN 721 (1001)
T KOG2040|consen 651 -GMKVVPVGCDANG--NIDMVDLKAKAEKHKD---NLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQVYLDGANMN 721 (1001)
T ss_pred -CCEEEEeeccCCC--CccHHHHHHHHHHhhh---hhheeEEecccc-cccc--cccHHHHHHHHHhcCCEEEecCCCcc
Confidence 9999999998655 5888999888765422 567788888863 3433 34677899999999999999988753
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC----cceEEEEEecCHHHHHHHHH--------------
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP----GFRVGAIYSNDDMVVAAATK-------------- 297 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~----GlRiG~li~~~~~~~~~~~~-------------- 297 (469)
-.-+ .-+.- +.+..+.=--++|+|..| |-.+|=|-. ++.+...+-.
T Consensus 722 AqVG---lc~pG------------d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgV-K~HLapfLP~HpVvs~~~~~~~~~ 785 (1001)
T KOG2040|consen 722 AQVG---LCRPG------------DIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSPGRPEDTSP 785 (1001)
T ss_pred ceec---ccCCc------------cccccceeecccceeeecCCCCCCCCCccch-hhhccccCCCCCccCCCCCCCCCC
Confidence 2111 00101 112222222577777443 333444322 2222221110
Q ss_pred h-----cccccCcH-HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCc--eEEEEEeccccc
Q 043923 298 M-----SSFGLVSS-QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNA--GLFCWVDMRHLL 368 (469)
Q Consensus 298 ~-----~~~~~~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~--g~~~~v~~~~~~ 368 (469)
+ .++++... +..++-.+++....+ +..-+.-.-+..++.++|+.+ .+-+....+ +.=+.+++.+..
T Consensus 786 ~gsVsaaP~Gsa~ILpISwaYikmMG~~GL-----~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK 860 (1001)
T KOG2040|consen 786 VGSVSAAPWGSALILPISWAYIKMMGSGGL-----KDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFK 860 (1001)
T ss_pred ccceeccCCCcceeehhHHHHHHHhccccc-----chhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhc
Confidence 0 11121111 233445555555443 222222223557788888876 333333332 111235665544
Q ss_pred ccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 369 RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 369 ~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.... .+..+.+++| .++|+....-++. -++.+-|-... -+.+|++++.+++-.+-++..+
T Consensus 861 ~~ag-ieavDvAKRL-~DYgFHaPTmswP---V~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~ 921 (1001)
T KOG2040|consen 861 KTAG-IEAVDVAKRL-MDYGFHAPTMSWP---VAGTLMIEPTESEDKAELDRFCDALISIREEIAQ 921 (1001)
T ss_pred cccC-CcHHHHHHHH-HhccCCCCccccc---cCCceEeccCccccHHHHHHHHHHHHHHHHHHHH
Confidence 3332 2334556665 5889876544332 24556665543 3779999999888766555544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.067 Score=60.06 Aligned_cols=192 Identities=16% Similarity=0.170 Sum_probs=122.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh------cCCCCEEEEccCCCcChHHHH
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL------AEPGEAFLLPTPYYPGFDRDL 152 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l------~~~gd~Vl~~~P~y~~~~~~~ 152 (469)
..-|-++.|...+|..||.|++.+++ +++++++|++.++-..|+..+++.+ ++.+.+-.++. .+..++
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 492 (1082)
T PLN02672 419 YFPCEPPAGSKRFRNLIAGFMRIYHH--IPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLPK----KWLTSL 492 (1082)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcC--CcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCCH----HHHhHh
Confidence 34577888999999999999999988 7899999999999999998887765 23332222221 122222
Q ss_pred hhh---------CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc
Q 043923 153 KWR---------TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK 223 (469)
Q Consensus 153 ~~~---------~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~ 223 (469)
... ..+.|+.-|.. .+.+.+.|++. ++++|+..--. +-..+....+.|++.+++-
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 556 (1082)
T PLN02672 493 AIENATSDSKSDDVITVIEAPRQ--------SDLVIELIKKL-----KPQVVVTGMAD---FEMRTSTAFEHLLNVTAEI 556 (1082)
T ss_pred hhhcccccCccCCeEEEEeCCCc--------chHHHHHHHhC-----CCeEEEEeccc---hhhhhHHHHHHHHHHHHhh
Confidence 222 02344444432 13455555554 77776644222 3344556788999999999
Q ss_pred CeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH
Q 043923 224 NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 224 ~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~ 297 (469)
|+.++.|..-.--.-..+......+++..- ..+.+..++.++-|.==.+.+-+.+++.-++.+...+.+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1082)
T PLN02672 557 GARLFLDISDHLELSSLPGSNGVLKYLAGH-----PLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSK 625 (1082)
T ss_pred CcEEEEehhhheeeccCCCcccHHHHhcCC-----CCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHH
Confidence 999999986541111122223444444321 134566667788876656999999999877666665543
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.51 Score=44.71 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=102.8
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCC---CEEEEccCCCcChH----HHHhhhCCCEEE--Eeecc-CCCCcccCHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAEPG---EAFLLPTPYYPGFD----RDLKWRTGVEIV--PIQCT-SLNGFQITETAI 178 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~~g---d~Vl~~~P~y~~~~----~~~~~~~g~~~~--~v~~~-~~~~~~~d~~~l 178 (469)
...+.|.+.|+-|..+..++.+|.+|- -+|+++.-.|+.-. ..++.. |+.+. .+.+. .++.-.+..+++
T Consensus 126 A~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lh-G~~~e~sm~~iePREGEetlRteDI 204 (465)
T KOG3846|consen 126 AQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLH-GISPENSMIQIEPREGEETLRTEDI 204 (465)
T ss_pred CCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhc-CCChHHheEEecccccccchhHHHH
Confidence 567889999999999999999998775 36888887776533 334444 65432 12221 234445666776
Q ss_pred HHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccC
Q 043923 179 EEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 258 (469)
Q Consensus 179 ~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~ 258 (469)
.+.|+. .+....+|+++--+.-||+.++.. +|-..-+..|+++=.|-+++ ++.-+. .+.
T Consensus 205 Ld~IEk---ngDeiA~v~fSGvqyYTGQ~Fdi~---aIT~Agq~kgc~VGfDLAHA---vgNVpL-~LH----------- 263 (465)
T KOG3846|consen 205 LDTIEK---NGDEIALVCFSGVQYYTGQYFDIG---AITFAGQFKGCLVGFDLAHA---VGNVPL-QLH----------- 263 (465)
T ss_pred HHHHHh---cCCeEEEEEeecceeecccccchh---hhhhcccCCCcEechhhhhh---hcCCce-EEe-----------
Confidence 666654 344677777777788999999844 45544456799999999987 554431 211
Q ss_pred CcCCeEEEEccCccccCCCcceEEEEEecCHHH
Q 043923 259 QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV 291 (469)
Q Consensus 259 ~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~ 291 (469)
.++..+.|+.--|.+....=.+|-+...++..
T Consensus 264 -dWgVDFACWCSYKYlnaGaGgIgGlFvHekh~ 295 (465)
T KOG3846|consen 264 -DWGVDFACWCSYKYLNAGAGGIGGLFVHEKHT 295 (465)
T ss_pred -ecCCceEEEeeecccccCCCccceeeeehhhh
Confidence 44677777777776642222355555544433
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.56 Score=44.01 Aligned_cols=334 Identities=15% Similarity=0.143 Sum_probs=170.2
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
|..+|+|+.|.-.+|.+.+.++-++..+- .-.|++..+-.++ ......+.+.--..+++.++ ++-.-+-+++
T Consensus 5 ~~~vvnFaaGPAklp~~VL~e~qkdl~n~---~g~GisV~EmSHR---sk~f~kii~~tes~lreLln--iPdn~~vlf~ 76 (370)
T KOG2790|consen 5 PERVVNFAAGPAKLPESVLLEAQKDLLNF---NGSGISVMEMSHR---SKDFAKIINDTESLLRELLN--IPDNYKVLFL 76 (370)
T ss_pred ccceeecCCCcccCCHHHHHHHHHHhhcc---CCCcceEEEeccc---chhHHHHHHHHHHHHHHHHc--CCCceeEEEE
Confidence 56789999999888988877776654321 1122222222222 11223344443334443333 3323334556
Q ss_pred eCChHHHHHHHHHHhc--CCC---CEEEEccCCCcChHHHHhhhCCCE-EEEeeccCCC-CcccCHHHHHHHHHHHHhcC
Q 043923 117 TAGATSANETLMFCLA--EPG---EAFLLPTPYYPGFDRDLKWRTGVE-IVPIQCTSLN-GFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 117 t~G~~~al~~~~~~l~--~~g---d~Vl~~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~ 189 (469)
-.|++.-+.++...|. +.| |-|+.-..+--.+.++- .. |.. .+..+...-. +--+|.+.++. +
T Consensus 77 QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAk-k~-~~~~~V~~~~k~y~ygkvPd~~~w~~--------~ 146 (370)
T KOG2790|consen 77 QGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAK-KY-GTPNIVIPKLKSYTYGKVPDPSTWEL--------N 146 (370)
T ss_pred eCCCcccccccchhhhccccCCccceEEeccccHHHHHHHH-hh-CCceEEeccccccccCcCCChhhccc--------C
Confidence 6778887877777775 444 66666665444444433 33 433 4444332111 11134444443 2
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++.+.|++|.--...|.-++.-. +-.-++.++|.|-+.- |-..+ .. .....+++.+
T Consensus 147 ~da~yvyyCaNETVHGVEf~~~P------~~~~~~~vlVaDmSSn---flSrp-vD--------------vsk~gvi~aG 202 (370)
T KOG2790|consen 147 PDASYVYYCANETVHGVEFDFIP------VNDPKGAVLVADMSSN---FLSRP-VD--------------VSKFGVIFAG 202 (370)
T ss_pred CCccEEEEecCceeeceecCCCC------CCCCCCceEEEecccc---hhcCC-cc--------------chhcceEEec
Confidence 35667888855445576554222 1124678888886543 32222 12 2234566788
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHH-------------HhcccccCcHHHH----HHHHHHhcCchhhHHHHHHHHHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAAT-------------KMSSFGLVSSQTQ----YLLSALLSDKKFTQNYISENKKR 332 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~-------------~~~~~~~~s~~~q----~~~~~~l~~~~~~~~~~~~~~~~ 332 (469)
.-|.+|.+|+- .++..++.+..... +-+.+.+++.... .....+++.+.. ..+.+.
T Consensus 203 AQKN~G~aG~T--vvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl-----~a~e~~ 275 (370)
T KOG2790|consen 203 AQKNVGPAGVT--VVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGL-----AAMEKL 275 (370)
T ss_pred cccccCccccE--EEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccH-----HHHHHH
Confidence 99999988854 33443433322111 0011222222222 233444555543 344444
Q ss_pred HHHHHHHHHHHHHhc-CCceec---C-CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEE
Q 043923 333 LKQRHRKLVSGLEKA-GISCLK---S-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 407 (469)
Q Consensus 333 l~~~~~~l~~~L~~~-g~~v~~---~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi 407 (469)
-.+..+.+.+.+.+. |+-..+ . .+-+-+.+++.+ + +-+.++.....+++=|.+- |.. .-|.+|.
T Consensus 276 n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~----d--~Le~eFLkeA~~~~mv~LK-GhR----SVGGiRA 344 (370)
T KOG2790|consen 276 NQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEK----D--ELEAEFLKEAAKEHMVQLK-GHR----SVGGIRA 344 (370)
T ss_pred HHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecc----h--HHHHHHHHHHHHhhhhccc-ccc----ccccchh
Confidence 455667888888876 442222 1 122334444431 1 3334566666655333332 221 2356999
Q ss_pred Eeec-CCHHHHHHHHHHHHHHHHh
Q 043923 408 CFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 408 ~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
|+-. ++-++.+++++-++++.+.
T Consensus 345 SlYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 345 SLYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred hhhccccHHHHHHHHHHHHHHHHh
Confidence 9855 5888888877777776654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.06 E-value=18 Score=38.20 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
+-++...+++....-.|...|+..|-++... .||=.+++.-.. ...++..+.+++ +|-++-- +++
T Consensus 391 ~gL~~IArrvh~~T~~l~~~l~~aghel~~k--~fFDTLkI~~~~------s~~~~l~rA~~~-~iNlr~~------ed~ 455 (1001)
T KOG2040|consen 391 HGLKEIARRVHNLTLILAEGLKNAGHELQHK--PFFDTLKIRCGC------SAEEVLDRAAKR-QINLRLV------EDG 455 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhccc--cccceEEEEecC------cHHHHHHHHHhh-cCceEEe------ecC
Confidence 3456666667777778888888877554432 266555544211 122455555544 5655521 355
Q ss_pred eEEEEeec-CCHHHHHHHHHHHH
Q 043923 404 WFRVCFAN-MSEDTLKLSMQRLK 425 (469)
Q Consensus 404 ~iRi~~~~-~~~e~i~~~l~~L~ 425 (469)
.+=+++.. +++++++.++..+.
T Consensus 456 tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 456 TIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred ceEEeecccccHHHHHHHHHHHc
Confidence 67788765 47889998888775
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.56 E-value=6 Score=37.80 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=62.7
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhC--CCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRT--GVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~--g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
+..+-|++|.|++..=..+..-|.+.|-++++-+-.=.+..+..+... | ++..+-+|-. +.+++....++..
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-----~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-----DREEIYRLAKKVK 109 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-----CHHHHHHHHHHHH
Confidence 556778888888888888888888888877666554444443433221 4 5555555532 3455555555444
Q ss_pred hcCCceeEEEEecCCCCC---CCCCCHHHHHHHHHH
Q 043923 187 KRHLKVKGVLVTNPSNPL---GTTMSRNELNLLVNI 219 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPt---G~~~s~e~l~~l~~~ 219 (469)
+.-..+. |+++|..-.+ .--.+.+++++..++
T Consensus 110 ~e~G~V~-ILVNNAGI~~~~~ll~~~d~ei~k~~~v 144 (300)
T KOG1201|consen 110 KEVGDVD-ILVNNAGIVTGKKLLDCSDEEIQKTFDV 144 (300)
T ss_pred HhcCCce-EEEeccccccCCCccCCCHHHHHHHHHH
Confidence 4444555 5777763323 234678888777764
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.36 E-value=7.8 Score=35.35 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=64.0
Q ss_pred EEEeCChHHHHHHHHHHhcCCCC--------------EEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHH
Q 043923 114 IVLTAGATSANETLMFCLAEPGE--------------AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIE 179 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd--------------~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 179 (469)
+.+-+|+.....++..++ +.|- ......|........+... |+.++...... ...-..++|.
T Consensus 4 ~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~-gi~l~~~~~~g--~~e~eve~L~ 79 (223)
T COG2102 4 IALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAM-GIPLVTFDTSG--EEEREVEELK 79 (223)
T ss_pred EEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhc-CCceEEEecCc--cchhhHHHHH
Confidence 567788888877777666 3332 2222222111112223333 88888877652 2334578888
Q ss_pred HHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEE
Q 043923 180 EAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHL 227 (469)
Q Consensus 180 ~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~i 227 (469)
++++.. +..+|+ +|.+++..++.++=.+|++.|+.+
T Consensus 80 ~~l~~l-----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~ 115 (223)
T COG2102 80 EALRRL-----KVDGIV-------AGAIASEYQKERVERLCEELGLKV 115 (223)
T ss_pred HHHHhC-----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEE
Confidence 888764 555655 899999999999999999999854
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=84.86 E-value=5.8 Score=36.56 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=55.6
Q ss_pred EEEeCC-hHHHHHHHHHHhcCCCCEEEE-ccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 114 IVLTAG-ATSANETLMFCLAEPGEAFLL-PTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 114 i~~t~G-~~~al~~~~~~l~~~gd~Vl~-~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
|+++.+ |..+- .++.+|.+++-.|.+ ..+.-......++.. |++++..+++ |.+.|.++++ +
T Consensus 1 I~V~GatG~~G~-~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~-g~~vv~~d~~-------~~~~l~~al~-------g 64 (233)
T PF05368_consen 1 ILVTGATGNQGR-SVVRALLSAGFSVRALVRDPSSDRAQQLQAL-GAEVVEADYD-------DPESLVAALK-------G 64 (233)
T ss_dssp EEEETTTSHHHH-HHHHHHHHTTGCEEEEESSSHHHHHHHHHHT-TTEEEES-TT--------HHHHHHHHT-------T
T ss_pred CEEECCccHHHH-HHHHHHHhCCCCcEEEEeccchhhhhhhhcc-cceEeecccC-------CHHHHHHHHc-------C
Confidence 344444 44443 344555556644433 333322223334555 9998866653 6788988887 5
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEE
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLIS 229 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~ 229 (469)
...|+++.|..+ .-..+....+++.|++.|+-.++
T Consensus 65 ~d~v~~~~~~~~---~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 65 VDAVFSVTPPSH---PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp CSEEEEESSCSC---CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred CceEEeecCcch---hhhhhhhhhHHHhhhccccceEE
Confidence 666777666443 23445678899999998865554
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 469 | ||||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 0.0 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 0.0 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 0.0 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 0.0 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 1e-151 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 5e-17 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 7e-17 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 1e-16 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 2e-15 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 2e-15 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 3e-15 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 4e-15 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 5e-15 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 6e-15 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 6e-15 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 3e-14 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 9e-14 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 1e-13 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 2e-13 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 5e-13 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 7e-13 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 1e-12 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-12 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 6e-12 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 1e-11 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 2e-11 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-11 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 7e-11 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-10 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 1e-10 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 2e-10 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 6e-10 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 2e-09 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 2e-09 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 6e-09 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 8e-09 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 2e-08 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 2e-08 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 5e-08 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 6e-08 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 8e-08 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 2e-07 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 4e-07 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 4e-07 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 6e-07 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 8e-07 | ||
| 3g7q_A | 417 | Crystal Structure Of Valine-Pyruvate Aminotransfera | 4e-06 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 9e-06 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 1e-05 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 1e-05 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 2e-05 | ||
| 1wst_A | 417 | Crystal Structure Of Multiple Substrate Aminotransf | 2e-05 | ||
| 3if2_A | 444 | Crystal Structure Of Putative Amino-Acid Aminotrans | 4e-05 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 5e-05 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 6e-05 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 6e-05 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 2e-04 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 7e-04 |
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta (Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A Resolution Length = 417 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417 | Back alignment and structure |
|
| >pdb|3IF2|A Chain A, Crystal Structure Of Putative Amino-Acid Aminotransferase (Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50 A Resolution Length = 444 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 469 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 0.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 0.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 2e-44 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 2e-44 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 3e-44 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 4e-43 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 3e-42 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 3e-40 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 3e-39 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 4e-39 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 7e-39 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 1e-37 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 7e-37 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 2e-36 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 4e-36 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 3e-35 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 7e-35 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 8e-35 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 1e-34 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 2e-34 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 3e-34 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 3e-34 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 4e-34 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 6e-34 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 1e-33 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 1e-33 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 1e-33 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 8e-33 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 8e-33 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 1e-31 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 2e-30 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 3e-30 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 9e-30 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 3e-29 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 3e-28 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 4e-28 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 7e-28 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 3e-26 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 6e-25 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 3e-24 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 8e-24 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 2e-23 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 6e-22 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 2e-21 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 7e-21 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 2e-20 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 1e-19 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 6e-19 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 8e-19 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 2e-18 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 2e-18 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 9e-18 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 2e-17 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 2e-17 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 3e-17 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 4e-17 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 3e-16 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 6e-15 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 7e-13 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 3e-10 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 4e-10 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 4e-10 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 2e-09 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 3e-09 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 8e-09 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 6e-08 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 5e-07 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 2e-04 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 3e-04 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 6e-04 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 668 bits (1725), Expect = 0.0
Identities = 353/431 (81%), Positives = 393/431 (91%), Gaps = 1/431 (0%)
Query: 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLD 60
M +LS AT N+HGQDSSYFLGWQEYEKNPY EV N GIIQMGLAENQL FDLLESWL
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 61 RNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120
+NP+AA FK++G+SIF ELALFQDYHGLPAFKKA+V+FM+EIRGNKVTFD + +VLTAGA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180
TSANET +FCLA+PGEA L+PTPYYPGFDRDLKWRTGVEIVPI CTS NGFQITETA+EE
Sbjct: 121 TSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE 180
Query: 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++ + +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 241 PGFVSIMEILKDRNC-ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
P F+S+ME+LKDRNC EN++VW RVH+VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359
SFGLVSSQTQ+LLSA+LSDKK T+NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 419
CWVDMRHLLRSNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 420 SMQRLKAFVDS 430
+MQRLKAFV
Sbjct: 421 AMQRLKAFVGE 431
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 644 bits (1664), Expect = 0.0
Identities = 239/428 (55%), Positives = 324/428 (75%), Gaps = 2/428 (0%)
Query: 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRN 62
+LS AT HG++S YF GW+ Y+ +P+ ++NP G+IQMGLAENQL DL+E W+ RN
Sbjct: 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 60
Query: 63 PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS 122
P + +G F+ +A FQDYHGLP F+KA+ +FM + RG +V FD ++V+ GAT
Sbjct: 61 PKGS-ICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 119
Query: 123 ANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAY 182
ANET++FCLA+PG+AFL+P+PYYP F+RDL+WRTGV+++PI C S N F+IT A++EAY
Sbjct: 120 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179
Query: 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242
+ AQK ++KVKG+++TNPSNPLGTT+ ++ L +++ + NIHL+ DEIY+ TVF +P
Sbjct: 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239
Query: 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG 302
FVSI EIL ++ + VHIVYSLSKD+GLPGFRVG IYS +D VV A KMSSFG
Sbjct: 240 FVSIAEILDEQEMTYCN-KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFG 298
Query: 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 362
LVS+QTQY L+A+LSD+KF N++ E+ RL +RH+ +GLE GI CLK+NAGLFCW+
Sbjct: 299 LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWM 358
Query: 363 DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 422
D+R LLR +TF++EM LW+ I+ DVKLN+SPGSS C EPGWFRVCFANM + T+ +++
Sbjct: 359 DLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALA 418
Query: 423 RLKAFVDS 430
R++ FV
Sbjct: 419 RIRRFVGV 426
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 70/366 (19%), Positives = 153/366 (41%), Gaps = 51/366 (13%)
Query: 87 GLPAFKKALVEFMSEI----RGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPT 142
G P ++A+ + K T +VL +G + + + + G+ L+P
Sbjct: 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQ 135
Query: 143 PYYPGFDRDLKWRT-----GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197
P +P + T G+ + C N ++ ++ ++ + + K K ++V
Sbjct: 136 PGFP------HYETVCKAYGIGMHFYNCRPENDWEAD---LD---EIRRLKDDKTKLLIV 183
Query: 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF----SSPGFVSIMEILKDR 253
TNPSNP G+ SR + +V + E + L SDEIY+G VF + F S+ +
Sbjct: 184 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV 243
Query: 254 NCENTQVWNRVHIVYS-LSKDLGLPGFRVGAIYSNDDM-----VVAAATKMSSFGL-VSS 306
++ +K+L +PG+R+G + D + ++ +
Sbjct: 244 PR----------VILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCT 293
Query: 307 QTQY-LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDM 364
Q L ALL+ Q ++ + ++++ L + + + G++ ++ +
Sbjct: 294 VVQAALGEALLNT---PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRI 350
Query: 365 RHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424
L + + ++E ++K++ + + + PG+ H PG+ R+ + + +++R+
Sbjct: 351 D-LEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPVEVYREAVERI 406
Query: 425 KAFVDS 430
KAF
Sbjct: 407 KAFCQR 412
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 2e-44
Identities = 78/349 (22%), Positives = 137/349 (39%), Gaps = 45/349 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G PAFKK++ + + +I+ T GAT AN +++ L EPG+ + P Y
Sbjct: 64 GSPAFKKSVSQLYT-------GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQ 116
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
D+ G E+ Q NG+ + + + K + + N +NP G
Sbjct: 117 QLY-DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGA 169
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
M R L LV I +E +++SDE+Y SI+E+ +++
Sbjct: 170 VMDRTYLEELVEIASEVGAYILSDEVYRSFSELD--VPSIIEV-----------YDKGIA 216
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQYLLSALLSDKKFTQN 324
V SLSK LPG R+G + +N V + + + L+ Q
Sbjct: 217 VNSLSKTYSLPGIRIGWVAANHQ-VTDILRDYRDYTMICAGVFDDLVAQLALAHY---QE 272
Query: 325 YISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
+ N+ L++ L +E+ +S ++ +V + + F L +
Sbjct: 273 ILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDF-CLQLLQEHG 331
Query: 384 VYDVKLNISPGSSCHC-TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
V V PG+ G+ R+ FA ++TL +++L F+
Sbjct: 332 VLLV-----PGN---RFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRF 371
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-44
Identities = 66/357 (18%), Positives = 142/357 (39%), Gaps = 43/357 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G + ++ + + + + ++LT+G + A + + LA PG+ L+P P +
Sbjct: 97 GFLSSREEIASYYHC---PEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFS 153
Query: 147 GFDRDLKWRT-----GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
++T G+E+ ++I ++ QL K ++V NPS
Sbjct: 154 ------LYKTLAESMGIEVKLYNLLPEKSWEID---LK---QLEYLIDEKTACLIVNNPS 201
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261
NP G+ S+ L ++ + + + +++DEIY VFS + + + D
Sbjct: 202 NPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTD--------- 252
Query: 262 NRVHIVYSLSKDLGLPGFRVGAIYSND------DMVVAAATKMSSFGL-VSSQTQYLLSA 314
+ L+K +PG+R+G I +D + + K+S L + Q L +
Sbjct: 253 VPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKS 312
Query: 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTF 373
+L + LK L G+ ++ + ++ V + + F
Sbjct: 313 ILCRTP--GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIE-MEHFPEF 369
Query: 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
E ++E +++V + ++ P + P + RV + E + + R++ F +
Sbjct: 370 ENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACSRIQEFCEQ 423
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-43
Identities = 70/350 (20%), Positives = 138/350 (39%), Gaps = 38/350 (10%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY-- 144
G+ ++A + R +V +++T G + A +A PG+ L+ P+
Sbjct: 80 GIWELREAFASYYK--RRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYA 137
Query: 145 -YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
Y F + GV+++P+ GF I + L + + KG++++NP NP
Sbjct: 138 NYNAFAK----IAGVKLIPVTRRMEEGFAIPQ-------NLESFINERTKGIVLSNPCNP 186
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G ++E+ LV I + LI DE+YS VF F S + I D +
Sbjct: 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALSIESD----------K 235
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL-VSSQTQYLLSALLSDKKFT 322
V ++ S+SK G RVG + + ++ +++ A K++ L Q LL+
Sbjct: 236 VVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNL---D 292
Query: 323 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWK 381
++ ++ ++R ++ LE+ K + + ++ + + F A L
Sbjct: 293 DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP-VEDAEEF-ARWMLTD 350
Query: 382 KIVYDVKLNISPGS---SCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
+ ++P R+ +D L ++ L +
Sbjct: 351 FNMDGETTMVAPLRGFYLTPGLGKKEIRIACVL-EKDLLSRAIDVLMEGL 399
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 3e-42
Identities = 72/358 (20%), Positives = 134/358 (37%), Gaps = 43/358 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
GLPA ++ + V D ++V+T G++ L + G+ + P YP
Sbjct: 69 GLPALRQRIARLYG--EWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYP 126
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ + L+ G+ V + N Q + G++V +P+NP GT
Sbjct: 127 SYRQILRA-LGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGT 176
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
+ + L+ + ISDEIY G + + V+ +E+ + V N
Sbjct: 177 MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTALEL-----TDECYVIN---- 226
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYL-LSALLSDKKFTQ 323
S SK + G+RVG + +D V +++ F +Q L+AL D
Sbjct: 227 --SFSKYFSMTGWRVGWMVVPEDQ-VRVVERIAQNMFICAPHASQVAALAALDCDA---- 279
Query: 324 NYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKK 382
+ N K + ++ L KAG + + + D+ L +
Sbjct: 280 -ELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLTDD-----SRAFAAE 333
Query: 383 IVYDVKLNISPGSS--CHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTLHNQ 438
I+ + ++PG G R +A + ++ + RL+AF+ + H+
Sbjct: 334 ILEKAGVAVTPGLDFDPERGA-GTLRFSYAR-ATADIEEGLDRLEAFMQARGEGHHHH 389
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-40
Identities = 71/360 (19%), Positives = 133/360 (36%), Gaps = 55/360 (15%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSA-NETLMFCLAEPGEAFLLPTPYY 145
G + A+ EF++ + F+ + +T GA ++ + ++ + F+ PY+
Sbjct: 77 GDVETRAAIAEFLN--NTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYF 134
Query: 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
P + + G +V + FQI A+EE +GV++ +P+NP G
Sbjct: 135 PEY-KVFVNAAGARLVEVP-ADTEHFQIDFDALEERINA------HTRGVIINSPNNPSG 186
Query: 206 TTMSRNELNLLVNIITEKN------IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQ 259
T S + L +++ +K+ I +I+DE Y V+ + +
Sbjct: 187 TVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKY---------- 236
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM------VVAAATKMSSFGLV--SSQTQYL 311
++ + YS SK L LPG R+G + D++ A + G V S Q +
Sbjct: 237 -YDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKM 295
Query: 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSN 371
+ Y K+ L GL + G C K + + +V +
Sbjct: 296 IVKCQGATGDINAY--------KENRDLLYEGLTRIGYHCFKPDGAFYMFVKALED---D 344
Query: 372 TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
+ + ++ V V C PGW R+ + + +K SM +
Sbjct: 345 SNAFCEKAKEEDVLIV-----AADGFGC--PGWVRISYCV-DREMIKHSMPAFEKIYKKY 396
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 3e-39
Identities = 71/352 (20%), Positives = 152/352 (43%), Gaps = 38/352 (10%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYY 145
GL ++A+ E + + N + D ++I++ GA A + + GE L+PTP +
Sbjct: 64 GLLELREAIAEKLK--KQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAF 121
Query: 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
+ + G + V + + F++ +++ K + +++ +P NP G
Sbjct: 122 VSYAPAVIL-AGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTG 174
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQVWNR 263
+++ +L + + + E ++ +ISDE+Y ++ SI + + +R T N
Sbjct: 175 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER----TITVN- 229
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQY-LLSALLSDKK 320
SK + G+R+G + + ++ K + + QY AL ++
Sbjct: 230 -----GFSKTFAMTGWRLGFVAAPSW-IIERMVKFQMYNATCPVTFIQYAAAKALKDERS 283
Query: 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-CWVDMRHL-LRSNTFEAEME 378
+ + E +K +R + + L + G+ +K G F + +R L S F +E+
Sbjct: 284 W--KAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK-GAFYIFPRIRDTGLTSKKF-SELM 339
Query: 379 LWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
L + V V PGS+ G+ R+ +A + + L+ +M R++ +
Sbjct: 340 LKEARVAVV-----PGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKE 385
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 4e-39
Identities = 79/357 (22%), Positives = 139/357 (38%), Gaps = 46/357 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
GLP +KA+VE R N V + +TA T A + + L +PG+ L+P P YP
Sbjct: 79 GLPELRKAIVEREK--RKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYP 136
Query: 147 GFDRDLKWRTGVEI-----VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
+ V+ V + +Q + +K + K + V NP+
Sbjct: 137 ------PYTGLVKFYGGKPVEYRTIEEEDWQPD------IDDIRKKITDRTKAIAVINPN 184
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261
NP G + L ++NI E I +ISDEIY + +S + KD V
Sbjct: 185 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLTKD---VPVIVM 240
Query: 262 NRVHIVYSLSKDLGLPGFRVG-AIYSNDDMVVAAATKM-----SSFGLVSSQTQY-LLSA 314
N LSK G+R+G + + + ++ + ++ Q+ ++
Sbjct: 241 N------GLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAG 294
Query: 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTF 373
L +Y+ E K+LK+R + L + GIS K + + + +
Sbjct: 295 LTGP----MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK----IEVGPW 346
Query: 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
+ + E ++++ + GS G FR F + L+ +M R + F+
Sbjct: 347 KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMKE 402
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 7e-39
Identities = 70/357 (19%), Positives = 138/357 (38%), Gaps = 40/357 (11%)
Query: 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSK-IVLTAGATSANETLMFCLAEPGEAFLLP 141
G+P ++A+ + V D ++T G+ LM + G+ L+P
Sbjct: 72 STSRGIPRLRRAISHWYR--DRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVP 129
Query: 142 TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN-P 200
P YP G ++ + F K + +++ P
Sbjct: 130 NPSYPIHIYGAVI-AGAQVRSVPLVPGIDFFNELERAIRE--SIPK----PR-MMILGFP 181
Query: 201 SNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENT 258
SNP + + +V + + ++ ++ D Y+ V+ SIM++ KD E
Sbjct: 182 SNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVE-- 239
Query: 259 QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYL----LSA 314
++LSK + G+R+G + N ++ V+A ++ S+ L ++A
Sbjct: 240 --------FFTLSKSYNMAGWRIGFMVGNPEL-VSALARIKSY-HDYGTFTPLQVAAIAA 289
Query: 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFE 374
L D Q + + ++ +QR LV GL +AG A ++ W +
Sbjct: 290 LEGD----QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAK---IPEPYAHL 342
Query: 375 AEMELWKKIVYDVKLNISPGSSC-HCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
+E KK++ D K+++SPG + R + D L+ +++ +KA +
Sbjct: 343 GSLEFAKKLLQDAKVSVSPGIGFGDYGD-DHVRFALI-ENRDRLRQAVRGIKAMFRA 397
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 49/378 (12%), Positives = 103/378 (27%), Gaps = 62/378 (16%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGAT----SANETLMFCLAEPGEAFLLPT 142
GLP K+ F + V T G+ + L
Sbjct: 83 GLPELKQEASRFAK--LFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFID 140
Query: 143 PYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSN 202
P + + G + G ++ E + ++ +NP+N
Sbjct: 141 PGFNLNKLQCRI-LGQKFESFDLFEYRGEKLREKLESYLQTG------QFCSIIYSNPNN 193
Query: 203 PLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF-----SSPGFVSIMEILKDRNCEN 257
P M+ EL ++ + T+ ++ +I D Y G F + + +N
Sbjct: 194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYT--DN 251
Query: 258 TQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL-------------- 303
+ S SK G R+G + + + +
Sbjct: 252 YILAL------SSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALY 305
Query: 304 -----VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG- 357
+ Q+ ++A+L + ++ ++ R + G + + G
Sbjct: 306 ALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGN 365
Query: 358 -------LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 410
F +L +K V I+ ++ R+C +
Sbjct: 366 EPLADGFYFT--------VGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEA-MRICTS 416
Query: 411 NMSEDTLKLSMQRLKAFV 428
+ E +RL+
Sbjct: 417 LLPESQFPDLEKRLQMLN 434
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 7e-37
Identities = 71/359 (19%), Positives = 130/359 (36%), Gaps = 38/359 (10%)
Query: 80 ALFQDYH------GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE 133
+ Q + G+ A ++A+ + + G + D+ I +TAGAT A + L
Sbjct: 55 HVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADS-DITVTAGATEALYAAITALVR 113
Query: 134 PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193
G+ + P Y + + +G + + F++ + +
Sbjct: 114 NGDEVICFDPSYDSYAPAIA-LSGGIVKRMA-LQPPHFRVDWQEFAALLSE------RTR 165
Query: 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 253
V++ P NP T + + L I I +ISDE+Y FS G S++
Sbjct: 166 LVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAH---- 221
Query: 254 NCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--QY- 310
Q+ R V S K + G++VG + + A K+ + S T Q
Sbjct: 222 ----PQLRERAVAVSSFGKTYHMTGWKVGYCVAPAP-ISAEIRKVHQYLTFSVNTPAQLA 276
Query: 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS 370
L L + + +Q+ LV+ L ++ + L F VD +
Sbjct: 277 LADML----RAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV--- 329
Query: 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRLKAF 427
+ ++E + + + + P S R+CFA E TL + +RL+
Sbjct: 330 -STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQL 386
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 72/375 (19%), Positives = 133/375 (35%), Gaps = 47/375 (12%)
Query: 80 ALFQDYH------GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE 133
A+ + G ++A+ G +T ++++T GAT A + L E
Sbjct: 50 AIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPET-EVLVTVGATEAIAAAVLGLVE 108
Query: 134 PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKV 192
PG LL P+Y + + G V + GF + A+ A +
Sbjct: 109 PGSEVLLIEPFYDSYSPVVA-MAGAHRVTVPLVPDGRGFALDADALRRAVTP------RT 161
Query: 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 252
+ +++ +P NP G +S EL + I N+ +I+DE+Y VF + +
Sbjct: 162 RALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF--- 218
Query: 253 RNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--QY 310
+ R + S +K G+++G + ++A + Q
Sbjct: 219 -----DGMAERTITISSAAKMFNCTGWKIGWACGPAE-LIAGVRAAKQYLSYVGGAPFQP 272
Query: 311 -LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLR 369
+ AL +++ + L+ R +L +GL + G + S F D R L
Sbjct: 273 AVALAL----DTEDAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPL-- 326
Query: 370 SNTFEAEMELWKKIVYDVKLNISPGSS-CHCTEPG----------WFRVCFANMSEDTLK 418
++ E + V + P S+ C R F +DTL
Sbjct: 327 --GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLD 383
Query: 419 LSMQRLKAFVDSITT 433
+++RL + T
Sbjct: 384 EAIRRLSVLAERPAT 398
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 4e-36
Identities = 75/353 (21%), Positives = 136/353 (38%), Gaps = 43/353 (12%)
Query: 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSK-IVLTAGATSANETLMFCLAEPGEAFLLP 141
+HG AFK+A+V+F VT D + + G + + C+ PG+ LLP
Sbjct: 82 GAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLP 139
Query: 142 TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
P Y + + + VP+ + + ++ + K K + +T P+
Sbjct: 140 DPGYTDYLAGVLL-ADGKPVPLNLEP-PHYLPDWSKVDSQ--IIDK----TKLIYLTYPN 191
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQ 259
NP G+T ++ + + + ++ D Y F + SI+ KD E
Sbjct: 192 NPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK-NPSILASENGKDVAIE--- 247
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQ---TQY-LLSAL 315
+YSLSK + GFRVG N DM + A K + + Q + AL
Sbjct: 248 -------IYSLSKGYNMSGFRVGFAVGNKDM-IQALKKYQTH-TNAGMFGALQDAAIYAL 298
Query: 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEA 375
+++ E K R + + L KA + + + G++ W++ S FE
Sbjct: 299 NHY----DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPGYDSEQFE- 353
Query: 376 EMELWKKIVYDVKLNISPGSSC-HCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427
+ +V + + ++PG + R+ A + + L + RL
Sbjct: 354 -----QFLVQEKSILVAPGKPFGENGN-RYVRISLA-LDDQKLDEAAIRLTEL 399
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 3e-35
Identities = 57/353 (16%), Positives = 119/353 (33%), Gaps = 36/353 (10%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSK-IVLTAGATSANETLMFCLAEPGEAFLLPTPYY 145
G + L ++ D +++T G A + G+ + P Y
Sbjct: 79 GDLGIRDLLAPRLA--AFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDY 136
Query: 146 PGFDRDLKWRTGVEIVPIQCTSL----NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
R L E+VP+Q + + T +EEA + L +NP+
Sbjct: 137 FAN-RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEA------FKAGARVFLFSNPN 189
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261
NP G S E+ + + +I+D++YS ++ + +
Sbjct: 190 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV-------DA 242
Query: 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQY-LLSALLSD 318
V + SK L G+R+G + + ++A K+ + + +Q L
Sbjct: 243 ENVVTIMGPSKTESLSGYRLGVAFGSRA-IIARMEKLQAIVSLRAAGYSQAVLRGWFDEA 301
Query: 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEM 377
++ + R + +L+ L G+ AG + + + L +
Sbjct: 302 ----PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVA-----PA 352
Query: 378 ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
E K + + ++PG+ R+ F+ + + +R+ V+
Sbjct: 353 EFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVER 404
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 7e-35
Identities = 68/367 (18%), Positives = 135/367 (36%), Gaps = 45/367 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G PA KAL +I ++ + +I++ GA + + L +PG+ ++ P+Y
Sbjct: 62 GHPALVKALSCLYGKIYQRQIDPNE-EILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYD 120
Query: 147 GFDRDLKWRTGVEIVPIQ---------CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197
++ ++ G V I + + + +E + K K +++
Sbjct: 121 CYEPMVR-MAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF------SSKTKAIIL 173
Query: 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 257
P NPLG +R EL ++ ++ + + ISDE+Y V++ V I +
Sbjct: 174 NTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATL-------- 225
Query: 258 TQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--QY----L 311
+W R + S K + G+++G + + + + T Q
Sbjct: 226 PGMWERTITIGSAGKTFSVTGWKLGWSIGPAHL-IKHLQTVQQNSFYTCATPLQAALAEA 284
Query: 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSN 371
+ + Y + K L+ + ++V L G+ + + G F D+ L
Sbjct: 285 FWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADL 344
Query: 372 TFEAEMELW-----KKIVYDVKLNISPGSS------CHCTEPGWFRVCFANMSEDTLKLS 420
+ E + K + KL P S+ E R CF + TL +
Sbjct: 345 SDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFE-KLVRFCFIK-KDSTLDAA 402
Query: 421 MQRLKAF 427
+ +A+
Sbjct: 403 EEIFRAW 409
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 8e-35
Identities = 60/355 (16%), Positives = 122/355 (34%), Gaps = 46/355 (12%)
Query: 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSK-IVLTAGATSANETLMFCLAEPGEAFLLP 141
F + + G V D + + G+ L+ L EP + LLP
Sbjct: 60 CLKSCTLPFLEEAARWYEGRYG--VGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLP 117
Query: 142 TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
YP + + + I A+ E + K +L+ P+
Sbjct: 118 EVAYPSYFGAARV-ASLRTFLIPLR--EDGLADLKAVPEGVWR------EAKVLLLNYPN 168
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQ 259
NP G + + + + LI D Y V+ S + + K+R E
Sbjct: 169 NPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPGAKERVVE--- 224
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYL----LSAL 315
++SLSK L GFR+G +++ +A ++ + +Q + + AL
Sbjct: 225 -------LFSLSKSYNLAGFRLGFALGSEEA-LARLERVKGV-IDFNQYAGVLRMGVEAL 275
Query: 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEA 375
+ + + + ++R + L K +S L A ++ W + + F
Sbjct: 276 KTP----KEVVRGYARVYRERALGMAEAL-KGVLSLLPPRATMYLWGRLPEGVDDLEF-G 329
Query: 376 EMELWKKIVYDVKLNISPGSS-CHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429
+ + + ++PG + G+ R+ + L + +R++ +D
Sbjct: 330 LRLVERGVA------LAPGRGFGPGGK-GFVRIALV-RPLEELLEAAKRIREALD 376
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-34
Identities = 63/371 (16%), Positives = 134/371 (36%), Gaps = 45/371 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G P+ +L++ S + +T GA + + L G+ ++ P++
Sbjct: 96 GRPSLINSLIKLYS--PIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFD 153
Query: 147 GFDRDLKWRTGVEIVPIQ----------CTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196
+ +++ G ++V + T + I E+A K K V+
Sbjct: 154 QYIPNIE-LCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI------TSKTKAVI 206
Query: 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 256
+ P NP+G +R EL L NI + N+ +ISDE+Y F + F I + +
Sbjct: 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYF-TDSFTRIATLSPE---- 261
Query: 257 NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--QYLLSA 314
+ V S K G+R+G + S + +++ A K + +S + Q +
Sbjct: 262 ---IGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACAN 318
Query: 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL------- 367
+ + Y + ++ + + S ++ G+ F VD +
Sbjct: 319 SI-NDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYP 377
Query: 368 --LRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-----PGWFRVCFANMSEDTLKLS 420
+ + ++ ++ + P + + E R + L+ +
Sbjct: 378 YPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-DDAYLENA 436
Query: 421 MQRLKAFVDSI 431
++RLK D +
Sbjct: 437 VERLKLLKDYL 447
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 63/373 (16%), Positives = 136/373 (36%), Gaps = 46/373 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G P K L F E+ G ++ +++T G A T L + G+ ++ P++
Sbjct: 68 GYPPLTKILASFFGELLGQEIDPLR-NVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFD 126
Query: 147 GFDRDLKWRTGVEIVPIQ----------CTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196
++ G V + S + +Q+ + + + K ++
Sbjct: 127 CYEPMTM-MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF------TSRTKALV 179
Query: 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 256
+ P+NPLG SR EL L+ ++ + ++ I+DE+Y V+ +SI +
Sbjct: 180 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASL------- 232
Query: 257 NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--QY-LLS 313
+W R + S K G++VG + D + + + + T Q +
Sbjct: 233 -PGMWERTLTIGSAGKTFSATGWKVGWVLGPDHI-MKHLRTVHQNSVFHCPTQSQAAVAE 290
Query: 314 ALLSDKKFTQN---YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS 370
+ ++ + Y + + +++ ++ L+ G+ + F D+ R
Sbjct: 291 SFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRK 350
Query: 371 NTF-------EAEMELWKKIVYDVKLNISPGSSCHCTEP-----GWFRVCFANMSEDTLK 418
+ K ++ + L P S + + R CF E TL+
Sbjct: 351 MPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQ 409
Query: 419 LSMQRLKAFVDSI 431
++L+ + +
Sbjct: 410 AMDEKLRKWKVEL 422
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-34
Identities = 70/369 (18%), Positives = 134/369 (36%), Gaps = 43/369 (11%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G P +AL + S++ + T ++++T GA A + + G+ ++ P++
Sbjct: 78 GHPRLVQALSKLYSQLVDRTINPMT-EVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFD 136
Query: 147 GFDRDLKWRTGVEIVPIQ--------CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198
++ +K G I S + + +E + K K +++
Sbjct: 137 CYEPMVK-AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------KTKMIIIN 189
Query: 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 258
P NPLG M R EL ++ N+ + N+ +SDE+Y VF + I +
Sbjct: 190 TPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTL--------P 241
Query: 259 QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--QY----LL 312
+W R + S K L G+++G Y + + + + + + T Q
Sbjct: 242 GMWERTITIGSAGKTFSLTGWKIGWAYGPEAL-LKNLQMVHQNCVYTCATPIQEAIAVGF 300
Query: 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNT 372
L K + Y + L + + S L + G++ G F D L
Sbjct: 301 ETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVD 360
Query: 373 FEAE------MELWKKIVYDVKLNISPGSSCHCTEP-----GWFRVCFANMSEDTLKLSM 421
E K + V L P S+ + + R CF ++ L+ +
Sbjct: 361 LTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAA 419
Query: 422 QRLKAFVDS 430
+ L+ + S
Sbjct: 420 EILRKWKGS 428
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 3e-34
Identities = 72/370 (19%), Positives = 144/370 (38%), Gaps = 33/370 (8%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPG----EAFLLPT 142
G+ ++ + +++ R V D I LT GA+ T++ L G ++P
Sbjct: 130 GVNCIREDVAAYITR-RDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPI 188
Query: 143 PYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSN 202
P YP + + V N + + + A Q A K H K + + NP N
Sbjct: 189 PQYPLYSAVIS-ELDAIQVNYYLDEENCWALNVNELRRAVQEA-KDHCDPKVLCIINPGN 246
Query: 203 PLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTQVW 261
P G SR + +++ E+ + L++DE+Y V+S F S ++L + E
Sbjct: 247 PTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPE---YS 303
Query: 262 NRVHIV--YSLSKD-LGLPGFRVG--AIYSNDDMVVAAATKMSSFGLVSSQT-QYLLSAL 315
+ V + +S SK +G G+R G + + + K+ S L + Q + +
Sbjct: 304 SNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIV 363
Query: 316 LSDKKF----TQNYISENK---KRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVDMRHL 367
++ + + E + L ++ + + GI C ++ + +
Sbjct: 364 VNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIP 423
Query: 368 LRSNT------FEAEMELWKKIVYDVKLNISPGSSCHCTEPGW-FRVCFANMSEDTLKLS 420
++ +M K++ + + + PGS E + FR+ + LK
Sbjct: 424 AKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP-PVEKLKTV 482
Query: 421 MQRLKAFVDS 430
+Q++K F +
Sbjct: 483 LQKVKDFHIN 492
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 4e-34
Identities = 68/346 (19%), Positives = 140/346 (40%), Gaps = 46/346 (13%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+ ++ + E K I++T G++ + + + G+ L+ P YP
Sbjct: 67 GILELREKISELYK--DKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYP 124
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ +++ G + V T L + K K +++ +PSNPLG
Sbjct: 125 CYKNFIRF-LGAKPVFCDFT--------------VESLEEALSDKTKAIIINSPSNPLGE 169
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
+ R + E ++ISDEIY+G V+ S +E + + +
Sbjct: 170 VIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEF--------DENLEKTIL 216
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQY-LLSALLSDKKFTQ 323
+ SK + G+R+G + SND+ ++ A K+ + +QY L A + T+
Sbjct: 217 INGFSKLYAMTGWRIGYVISNDE-IIEAILKLQQNLFISAPTISQYAALKAFEKE---TE 272
Query: 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
I+ K +R R ++ ++ G + + ++ E E K+
Sbjct: 273 REINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIG--------EDGREFAYKL 324
Query: 384 VYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429
+ + + ++PG + R+ +AN S + +K ++R+K F++
Sbjct: 325 LKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEFLN 369
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 6e-34
Identities = 67/350 (19%), Positives = 145/350 (41%), Gaps = 44/350 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY-- 144
G+P ++AL E R N ++ + ++T G + A L + +PG+ ++ +PY
Sbjct: 69 GIPELREALAEKFR--RENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWV 126
Query: 145 -YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
YP ++ G +V ++ GF ++ + + K ++V +P+NP
Sbjct: 127 SYP----EMVRFAGGVVVEVETLPEEGFVPD------PERVRRAITPRTKALVVNSPNNP 176
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G + L L + E + +L+SDEIY ++ S + + T N
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY-EGEHFSPGRVAPEH----TLTVNG 231
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----SSFGLVSSQTQYLLSALLSD 318
+K + G+R+G + V+ A + +S + Q+ L++
Sbjct: 232 A------AKAFAMTGWRIGYACGPKE-VIKAMASVSRQSTTS---PDTIAQWATLEALTN 281
Query: 319 KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEME 378
++ ++ ++ ++ ++R L+ GL G+ ++ + + +D + + A
Sbjct: 282 QEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIA-PDEVRAAER 340
Query: 379 LWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
L + V V PG+ G R+ +A SE+ L+ +++R +
Sbjct: 341 LLEAGVAVV-----PGTDFAA--FGHVRLSYAT-SEENLRKALERFARVL 382
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-33
Identities = 71/365 (19%), Positives = 142/365 (38%), Gaps = 27/365 (7%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYY 145
G+ + A+ ++ G + I LT GA+ +M L + L+P P Y
Sbjct: 135 GIHGLRDAIASGIASRDG--FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQY 192
Query: 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
P + + G +VP G+ + + +++ + A+ R + V+ ++V NP NP G
Sbjct: 193 PLYSASIA-LHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTQVWNRV 264
++ +V + + L++DE+Y ++ + F S +I++ + +
Sbjct: 252 QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDL--PL 309
Query: 265 HIVYSLSK-DLGLPGFRVG--AIYSNDDMVVAAATKMSSFGLVSS-QTQYLLSALLSDKK 320
S+SK G G R G I V K++S L S+ Q L S +++ K
Sbjct: 310 VSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPK 369
Query: 321 ----FTQNYISENK---KRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVDMRHLLR--- 369
+Y +E L +R + L K GI+C ++ ++ + + +
Sbjct: 370 ASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIE 429
Query: 370 ---SNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-PGWFRVCFANMSEDTLKLSMQRLK 425
+ + +++ + + PGS FR ED + + R
Sbjct: 430 AAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILP-QEDKIPAVISRFT 488
Query: 426 AFVDS 430
F ++
Sbjct: 489 VFHEA 493
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 1e-33
Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 52/353 (14%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY-- 144
G+ ++ + + + K ++V+T GA A L +PG+ ++ +P
Sbjct: 79 GIYELREGIAKRIG--ERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWV 136
Query: 145 -YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
Y G + ++ FQ + ++ K K VL+ +P+NP
Sbjct: 137 SYI----PQIILAGGTVNVVETFMSKNFQPS------LEEVEGLLVGKTKAVLINSPNNP 186
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQVW 261
G R L LV + ++N ++ISDE+Y V++ F SI+++ DR
Sbjct: 187 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE-FTSILDVSEGFDR----IVYI 241
Query: 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQY-LLSALLSD 318
N SK + G+RVG + S++ V A +K+ S +++ QY L AL D
Sbjct: 242 NGF------SKSHSMTGWRVGYLISSEK-VATAVSKIQSHTTSCINTVAQYAALKALEVD 294
Query: 319 KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-CWVDMRHLLRSNTFEAEM 377
S + K+R +V L+K G+ ++ G F + +R ++
Sbjct: 295 -------NSYMVQTFKERKNFVVERLKKMGVKFVEPE-GAFYLFFKVR--------GDDV 338
Query: 378 ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
+ ++++ + K+ + PGS+ +PG+ R+ FA S + L ++ R++ F++S
Sbjct: 339 KFCERLLEEKKVALVPGSA--FLKPGFVRLSFAT-SIERLTEALDRIEDFLNS 388
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 75/350 (21%), Positives = 144/350 (41%), Gaps = 45/350 (12%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
GLPA ++AL E + + +V+T+GAT A L+ L PG+ ++ P++
Sbjct: 62 GLPALREALAE--------EFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFD 113
Query: 147 GFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
+ D G + ++ + GF++ +A+E+A + + +L+ P NP G
Sbjct: 114 VYLPDAF-LAGAKARLVRLDLTPEGFRLDLSALEKAL------TPRTRALLLNTPMNPTG 166
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265
EL + + ++ LISDE+Y + + E + R
Sbjct: 167 LVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPE----------RTF 215
Query: 266 IVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--QYLLSALLSDKKFTQ 323
V S K L G+RVG I + + M + S+ T Q ++ L + +
Sbjct: 216 TVGSAGKRLEATGYRVGWIVGPKE-FMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-RE 273
Query: 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
+ ++ ++R L GL G+ F ++ ++A ++
Sbjct: 274 GFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG------WDAF-----RL 322
Query: 384 VYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRLKAFVDSI 431
V + ++ + P S+ + +P FR F +E+ L L+++RL V+S
Sbjct: 323 VEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSP 371
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 8e-33
Identities = 74/352 (21%), Positives = 149/352 (42%), Gaps = 39/352 (11%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY-- 144
G P ++A+ + + R N + + I++T G + LM + EPG+ ++P P+
Sbjct: 68 GEPRLREAIAQKLQ--RDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWV 125
Query: 145 -YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
YP ++ V + T F+++ Q+ Q K K ++ PSNP
Sbjct: 126 SYP----EMVKLAEGTPVILPTTVETQFKVS------PEQIRQAITPKTKLLVFNTPSNP 175
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G + +E+ + + E + ++SDEIY ++ +SI + + R
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE-------AYER 228
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQY-LLSALLSDKK 320
+ +K + G+RVG + +V AATK+ V + QY ++A +
Sbjct: 229 SVVCSGFAKTYAMTGWRVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYENS-- 285
Query: 321 FTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMEL 379
Q+ + E +R R ++ L G+ C K + + + + + T + ++
Sbjct: 286 --QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSI-----AKTGRSSLDF 338
Query: 380 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
+++ ++ PG++ R+ +A DT+K M+RL+ F+ I
Sbjct: 339 CSELLDQHQVATVPGAA--FGADDCIRLSYAT-DLDTIKRGMERLEKFLHGI 387
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 8e-33
Identities = 72/381 (18%), Positives = 123/381 (32%), Gaps = 60/381 (15%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-------------- 132
G AF ALV F + + I LT G+ +A L
Sbjct: 84 GDSAFIDALVGFFNRHYD--WNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESK 141
Query: 133 -EPGEAFLLPTPYYPGFDRDLKWR-----TGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186
L TP Y G+ I + GF E L
Sbjct: 142 SVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPA 201
Query: 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246
+ ++ + + P+NP G ++ E+ L I +I LI D Y G F + +
Sbjct: 202 LKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAY-GMPFPNIIYSDA 260
Query: 247 MEILKDRNCENTQVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLV 304
+ + SLSK +GLPG R G I ++ V+ A + M++ +
Sbjct: 261 HLNWDNN------------TILCFSLSK-IGLPGMRTGIIVADAK-VIEAVSAMNAVVNL 306
Query: 305 --SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGL 358
+ + + L+++ + Q +E K +++ V L++ + K +
Sbjct: 307 APTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAI 366
Query: 359 FCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP--------GWFRVCFA 410
F W+ + L S E K + V P R+ A
Sbjct: 367 FLWLWFKDLPISTLDLYERLKAKGTLI-V-----PSEYFFPGVDVSDYQHAHECIRMSIA 420
Query: 411 NMSEDTLKLSMQRLKAFVDSI 431
E TL ++ + V +
Sbjct: 421 -ADEQTLIDGIKVIGEVVREL 440
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 1e-31
Identities = 58/369 (15%), Positives = 106/369 (28%), Gaps = 70/369 (18%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA--------EPGEAF 138
+K + E E+ GN IV G T L+ L+ P
Sbjct: 101 ISFELEKTIKELH-EVVGNAAA-KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKV 158
Query: 139 LLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198
+ P+YP F E + + + +VT
Sbjct: 159 VAHAPFYPVF---------REQTKYFDKKGYVWAGNAANYVNV------SNPEQYIEMVT 203
Query: 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 258
+P+NP G K I D +Y P + I
Sbjct: 204 SPNNPEGLLRHA----------VIKGCKSIYDMVYYW-----PHYTPIKY---------- 238
Query: 259 QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQYL-LSAL 315
+ +++++SK G G R G D+ V + +TQ L L
Sbjct: 239 -KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVL 297
Query: 316 LSDKKFTQNYISENK-------KRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHL 367
+ + K+L++R + + L+++ S + +C R
Sbjct: 298 KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMR 357
Query: 368 LRSNTF------EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 421
S ++ E + + + ++N G + R+ ++D M
Sbjct: 358 PPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLM 415
Query: 422 QRLKAFVDS 430
LK V +
Sbjct: 416 YYLKDMVKA 424
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-30
Identities = 56/363 (15%), Positives = 117/363 (32%), Gaps = 40/363 (11%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+ + + M + S+ ++T T + + LLP +
Sbjct: 89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWG 148
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN-PSNPLG 205
+ R G + T ++ EA Q K K +++ N P+NP G
Sbjct: 149 NYKLVFNTRNGAN-LQTYPIFDKDGHYTTDSLVEALQSYNKD----KVIMILNYPNNPTG 203
Query: 206 TTMSRNELNLLVNIITE-----KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQV 260
T + E+ +V I + + D+ Y G + S+ L + + N
Sbjct: 204 YTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLH-SNA-- 260
Query: 261 WNRVHIVYSLSKDLGLPGFRVGAI-YSNDDMVVAAA----TKMSSFGLVSS---QTQYLL 312
+ +K+ GFRVG + + D K +SS TQ +
Sbjct: 261 -ILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAV 319
Query: 313 SALLSD----KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 368
+L + K + I K+R + + + + N+G F + + +
Sbjct: 320 KHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHD-V 378
Query: 369 RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
+ + K + + ++ R+ F+ + +D + + +
Sbjct: 379 DPEAL-RKHLIDKYSIGVI-----ALNATD------IRIAFSCVEKDDIPHVFDSIAKAI 426
Query: 429 DSI 431
D +
Sbjct: 427 DDL 429
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 64/384 (16%), Positives = 120/384 (31%), Gaps = 68/384 (17%)
Query: 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS--ANETLMFCLAEPGEAFLL 140
G A ++A+ G +I ++ G+ A + + +
Sbjct: 108 GAEQGQGALREAVASTFYGHAGRAAD----EIFISDGSKCDIAR---IQMMFGSKPTVAV 160
Query: 141 PTPYYP---------GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191
P YP G D I + C N F + + +
Sbjct: 161 QDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAK-----------R 209
Query: 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI-- 249
+ +P+NP G +R +L LVN + L+ D Y+ + + +I EI
Sbjct: 210 TDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG 269
Query: 250 LKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--------- 300
+ E S SK G G R+G + A + +
Sbjct: 270 ADEVAIE----------TCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTC 319
Query: 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
F S+ Q A L + ++ K K+ + L + + G S + +
Sbjct: 320 FNGASNIVQAGGLACLQPE--GLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYI 377
Query: 361 WV---DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC-HCTEPGWFRVCFANMSEDT 416
WV S +++ +I+ + +PGS E G+ R S +
Sbjct: 378 WVGFPGK----PS------WDVFAEILERCNIVTTPGSGYGPAGE-GFVRASAFG-SREN 425
Query: 417 LKLSMQRLKAFVDSITTTLHNQSN 440
+ +++R K + H+ +
Sbjct: 426 ILEAVRRFKEAYGKRNASHHHHHH 449
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 9e-30
Identities = 68/421 (16%), Positives = 132/421 (31%), Gaps = 85/421 (20%)
Query: 87 GLPAFKKALV-EFMSEIRGNKVTFDTS-KIVLTAGATSA-----NETLMFCLAEPGEAFL 139
+ + +V +++ G S + G T+A + L + G+
Sbjct: 139 RMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVA 198
Query: 140 LPTPYYPGFDRDLKWRTG-VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198
+ P + + + +E V I +Q ++ +++ + +K
Sbjct: 199 IGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKL------KDPAIKIFFCV 252
Query: 199 NPSNPLGTTMSRNELNLLVNIITEKNIHL--ISDEIYSGTVFSSPGFVSIMEILKDRNCE 256
NPSNP M + L + NI+ E L ++D++Y F S+ I +
Sbjct: 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD---DFQSLFAICPE---- 305
Query: 257 NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAA-TKMSSFGLVSSQTQY-LLSA 314
+VYS SK G G+R+G + ++ V A K+ V+ +Y L
Sbjct: 306 ------NTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLP 359
Query: 315 LLSDKKF-------------------------------------TQNYISENKKRLKQRH 337
+ KF + K+L +R
Sbjct: 360 DVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRR 419
Query: 338 RKLVSGLEKAGISCLKS-NAGLF-CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS--- 392
+ + G+ L+ NA + +D++ + EA E K +
Sbjct: 420 ETTL--YRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD 477
Query: 393 -------PGSSCHCTEPGWFRVCFANMSEDTLKLSMQR-LKAFVDSITTTLHNQSNHQSI 444
PG R AN + ++ R L+ D + Q+ + +
Sbjct: 478 ETGIVLLPGRGFGSNR-PSGRASLAN-LNEYEYAAIGRALRKMADELYAEYSGQAQNLKL 535
Query: 445 K 445
Sbjct: 536 A 536
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 62/368 (16%), Positives = 115/368 (31%), Gaps = 59/368 (16%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGE---AFLLPTP 143
G A AL + E G + I LT G+ SA L A + P
Sbjct: 76 GKTALLNALAVLLRETLG--WDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFP 133
Query: 144 YYPGFDRDLKWRTGVEI-----VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198
P + ++ I+ F+ ++ + + V+
Sbjct: 134 LAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYH---VDF---EHLHIGEETGMICVS 187
Query: 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 258
P+NP G ++ EL L + + NI L+ D Y G F F +
Sbjct: 188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAY-GVPFPGIIFSEARPLWNPN----- 241
Query: 259 QVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDD----MVVA-AATKMSSFGLVSSQTQYL 311
I+ SLSK LGLPG R G I +ND + ++ +
Sbjct: 242 -------IILCMSLSK-LGLPGSRCGIIIANDKTITAIANMNGIISLAP----GGMGPAM 289
Query: 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHL 367
+ ++ + + K QR ++ ++ + + K +F W+ + L
Sbjct: 290 MCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDL 349
Query: 368 LRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW-------FRVCFANMSEDTLKLS 420
+ + + ++ V PG R+ + D ++
Sbjct: 350 PITTELLYQRLKARGVLM-V-----PGHYFFPGLDKPWPHTHQCMRMNYVP-EPDKIEAG 402
Query: 421 MQRLKAFV 428
++ L +
Sbjct: 403 VKILAEEI 410
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-28
Identities = 59/386 (15%), Positives = 119/386 (30%), Gaps = 77/386 (19%)
Query: 77 RELALFQDYH------GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS--ANETLM 128
EL+ + Y G + A+ + G + D + ++ GA + +
Sbjct: 83 HELSTIEGYSGYGAEQGAKPLRAAIAKTFY--GGLGIGDD--DVFVSDGAKCDISR---L 135
Query: 129 FCLAEPGEAFLLPTPYYP-----------GFDRDLKWRTGVEIVPIQCTSLNGFQITETA 177
+ + P YP + + I ++CT NGF +
Sbjct: 136 QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST 195
Query: 178 IEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237
+ + + +P+NP G +R +L LV + ++ D Y+ +
Sbjct: 196 VG-----------RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYM 244
Query: 238 FSSPGFVSIMEI--LKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAA 295
SI EI ++ E S S G G R+G ++ +
Sbjct: 245 SDDN-PRSIFEIPGAEEVAME----------TASFSNYAGFTGVRLGWTVIPKKLLYSDG 293
Query: 296 T---------KMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK 346
+ F S+ +Q A L+ + + + K+ ++
Sbjct: 294 FPVAKDFNRIICTCFNGASNISQAGALACLTPE--GLEAMHKVIGFYKENTNIIIDTFTS 351
Query: 347 AGISCLKSNAGLFCWV---DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSS-CHCTEP 402
G + WV + S +++ +I+ + +PGS E
Sbjct: 352 LGYDVYGGKNAPYVWVHFPNQ----SS------WDVFAEILEKTHVVTTPGSGFGPGGE- 400
Query: 403 GWFRVCFANMSEDTLKLSMQRLKAFV 428
G+ RV + + + +R K
Sbjct: 401 GFVRVSAFG-HRENILEACRRFKQLY 425
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-28
Identities = 71/347 (20%), Positives = 145/347 (41%), Gaps = 34/347 (9%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G+P ++ L F+ + +V+ + IV+T G T A + L L +PG+ + P Y
Sbjct: 76 GIPELREELAAFLKKYDHLEVSPE--NIVITIGGTGALDLLGRVLIDPGDVVITENPSYI 133
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS--NPL 204
+ G +I + + +G ++ +EE + + + KVK ++ T P+ NP+
Sbjct: 134 NTLLAFEQL-GAKIEGVPVDN-DGMRVD--LLEEKIKELKAKGQKVK-LIYTIPTGQNPM 188
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264
G TMS L+ I ++ ++ +I D Y+ + V + + + RV
Sbjct: 189 GVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNE---------GRV 239
Query: 265 HIVY--SLSKDLGLPGFRVGAIYSNDDMVVAAAT-KMSSFGLVSSQTQYLLSALLSDKKF 321
+ +LSK LG GFR+G I + +++ K + +QY+ L F
Sbjct: 240 --IVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF 296
Query: 322 TQNYISENKKRLKQRHRKLVSGLEK--AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMEL 379
+ ++ K++ ++ LE K AG+F + +
Sbjct: 297 EKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADG------ISF 350
Query: 380 WKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRL 424
+++ + + PG + E G R+ F+ S++ + + +++L
Sbjct: 351 ANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKL 397
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 7e-28
Identities = 65/359 (18%), Positives = 118/359 (32%), Gaps = 55/359 (15%)
Query: 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPT 142
GLPA ++ L E D +I ++ GA L+ P + +
Sbjct: 72 GPDFGLPALRQKLSEDFYRGF-----VDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQD 125
Query: 143 PYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSN 202
P YP + + EI+ + C N F E + + + +P+N
Sbjct: 126 PSYPAYLDIARLTGAKEIIALPCLQENAFFPE---FPED--------THIDILCLCSPNN 174
Query: 203 PLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTQV 260
P GT +++++L +V+ E I ++ D YS + SI EI + E
Sbjct: 175 PTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIE---- 230
Query: 261 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---------KMSSFGLVSSQTQY- 310
+ S SK LG G R+G ++ A ++F S Q
Sbjct: 231 ------INSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEA 284
Query: 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL-LR 369
++ L + E ++ L L G + WV +
Sbjct: 285 GVAGLSILPQ------LEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPTQANIS 338
Query: 370 SNTFEAEMELWKKIVYDVKLNISPGSS-CHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427
+L+ + + + I+PG G+ R + + + +RL+
Sbjct: 339 D------RDLFDFFLREYHIAITPGIGFGRSGS-GFVRFSSLG-KREDILAACERLQMA 389
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-26
Identities = 69/417 (16%), Positives = 130/417 (31%), Gaps = 86/417 (20%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCLA-----EPGEAFLL 140
L +K + F+ E+ + + T G T+A LA + G+ +
Sbjct: 139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAI 198
Query: 141 PTPYYPGFDRDLKWRTGV-EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN 199
P + + R + + V + N ++I IE+ + +K ++V N
Sbjct: 199 NEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKL------KDPSIKALIVVN 252
Query: 200 PSNPLGTTMSRNELNLLVNIITE-KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 258
P+NP N LN + + + + +ISDE+Y V F SI ++
Sbjct: 253 PTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP---NFKSIYSVVPY------ 303
Query: 259 QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAA-TKMSSFGLVSSQTQYLLSALLS 317
+VYS SK G G+R+G I N+ V + L +Y L
Sbjct: 304 ----NTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDP 359
Query: 318 DK--------------------------------------------KFTQNYISENKKRL 333
DK YI +K +
Sbjct: 360 DKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLV 419
Query: 334 KQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV------ 387
+R+ +L ++ +N + +D+ L + E + ++
Sbjct: 420 SERYDQLHDAMQAPKD-ETDTNTHYYSLIDIYRLA-EKIYGKEFRDYLTNNFEQVDFLLK 477
Query: 388 -----KLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTLHNQS 439
+ + G G RV AN+ + L +++ + +
Sbjct: 478 LAEKNGVVLVDGVGFGAKP-GELRVSQANLPTEDYALIGKQVLELLKEYYEEFKQNN 533
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 6e-25
Identities = 67/401 (16%), Positives = 135/401 (33%), Gaps = 70/401 (17%)
Query: 53 DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAF-----KKALVEFMSEIRGNKV 107
E + + D G ++ F D L F + A+ + + GN
Sbjct: 33 TAYEEYWRKMGDRCTVTIRG---CDLMSYFSDMTNLCWFLEPELEDAIKDLH-GVVGNAA 88
Query: 108 TFDTSKIVLTAGATSANETLMFCLAEPGE----AFLLPTPYYPGFDRDLKWRTGVEIVPI 163
T + IV+ G+T + + L+ + + P+Y + VE
Sbjct: 89 T-EDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTY---------VEETTY 138
Query: 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK 223
+ + ++ ++ LVT+P+NP GT +VN +
Sbjct: 139 VRSGMYKWEGDAWGFDKK---------GPYIELVTSPNNPDGTIRET-----VVNRPDDD 184
Query: 224 NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGA 283
+I D Y ++ I + ++ + + ++++ SK G G R+G
Sbjct: 185 EAKVIHDFAYYWPHYT--------PITRRQD-------HDI-MLFTFSKITGHAGSRIGW 228
Query: 284 IYSNDDMVVAAATK---MSSFGLVSSQTQY-------LLSALLSDKKFTQNYISENKKRL 333
D V + ++S G VS ++Q +L + ++N+ ++ +
Sbjct: 229 ALVKDKEVAKKMVEYIIVNSIG-VSKESQVRTAKILNVLKETCKSESESENFFKYGREMM 287
Query: 334 KQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV----KL 389
K R KL ++++ L FC + L F + + K+
Sbjct: 288 KNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKV 347
Query: 390 NISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
G C ++ RV + ED + ++RL
Sbjct: 348 MSRAGERCG-SDKKHVRVSMLS-REDVFNVFLERLANMKLI 386
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-24
Identities = 75/382 (19%), Positives = 148/382 (38%), Gaps = 56/382 (14%)
Query: 64 DAAGFKRDGQSIFREL--ALFQDY---HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118
+ I + Q Y G ++ L++++ + R + I++T+
Sbjct: 92 PKEIIRDILVEIMEKYADKALQ-YGTTKGFTPLRETLMKWLGK-RYGISQDN--DIMITS 147
Query: 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAI 178
G+ A + + PG+ ++ P Y + + + + I G ++ +
Sbjct: 148 GSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFY-EPQYIQIPLDD-EGMKVE--IL 203
Query: 179 EEAYQLAQKRHLKVKGVLVTNPS--NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236
EE + + + KVK V+ T P+ NP G TM+ + L+ + +E + ++ D+ Y
Sbjct: 204 EEKLKELKSQGKKVK-VVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGEL 262
Query: 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDMVVAA 294
+S I + + RV +Y + SK L PGFR+G + + ++
Sbjct: 263 RYSGNPEKKIKALDNE---------GRV--IYLGTFSKILA-PGFRIGWMVGDPGIIRKM 310
Query: 295 AT-KMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK---AGIS 350
K S+ + Q + + + +I E +K K R ++ LE+ G+
Sbjct: 311 EIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPEGVK 369
Query: 351 CLKSNAGLFCWV------DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG- 403
K G+F WV D + +L A + K + Y PG + +
Sbjct: 370 WTKPEGGMFIWVTLPDGIDSKKMLE----RA---IKKGVAY------VPGEAFYAHRDVK 416
Query: 404 -WFRVCFANMSEDTLKLSMQRL 424
R+ F + ED + ++RL
Sbjct: 417 NTMRLNFTYVDEDKIMEGIKRL 438
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 8e-24
Identities = 61/356 (17%), Positives = 124/356 (34%), Gaps = 48/356 (13%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G P K+ +++ + + G D ++ T G+ A + + + +L P Y
Sbjct: 86 GDPVLKQQILKLLERMYGITGL-DEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYL 144
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS--NPL 204
G + V + +G + + + + +VK + + NP
Sbjct: 145 GAINAFRQY-LANFVVVPLED-DGMDLNVLERKLSEFDKNGKIKQVK-FIYVVSNFHNPA 201
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264
G T S + LV I + ++ ++ D+ Y + I +I
Sbjct: 202 GVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPE----------- 250
Query: 265 HIVY--SLSKDLGLPGFRVGAIYSNDDMVVA-AATKMSSFGLVSSQTQYLLSALLSDKKF 321
+V + SK L PG R+G + + + + K S+ + T L + L
Sbjct: 251 RVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL 309
Query: 322 TQNYISENKKRLKQRHRKLVSGLEK-----AGISCLKSNAGLFCWV------DMRHLLRS 370
+ + +++ +++ LE+ G+ +KS GLF W+ D +
Sbjct: 310 -LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFE- 367
Query: 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRL 424
A KK+ Y PG + R+ F ++ + ++RL
Sbjct: 368 ---YA---KRKKVFY------VPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRL 411
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 58/354 (16%), Positives = 119/354 (33%), Gaps = 45/354 (12%)
Query: 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS----ANETLMFCLAEPGEAFLL 140
+ + A F + ++++ T G S N
Sbjct: 58 SAFEESLRAAQRGFFKRRFK--IELKENELISTLG--SREVLFNFPSFVLFDYQNPTIAY 113
Query: 141 PTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQ--ITETAIEEAYQLAQKRHLKVKGVLVT 198
P P+Y ++ K+ + + + T N F + E ++ +V V++
Sbjct: 114 PNPFYQIYEGAAKF-IKAKSLLMPLTKENDFTPSLNEKELQ-----------EVDLVILN 161
Query: 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 258
+P+NP G T+S EL V + + + LI+DE YS ++P S++E
Sbjct: 162 SPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPP-PSLLEA---CMLAGN 217
Query: 259 QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA-AATKMSSFGLVSSQTQYLLSALLS 317
+ + V +++SLSK PG R G I + ++ A + ++ Q A
Sbjct: 218 EAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWL 277
Query: 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEM 377
D + + KL K + L + ++ + +
Sbjct: 278 D----DRHAEFFRNIYANN-LKL---ARKIFKNTLIYPYSFYVYLPV---------QNGE 320
Query: 378 ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRLKAFVDS 430
K + + + P G V A L+ ++ ++ + ++
Sbjct: 321 NFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYREN 374
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 6e-22
Identities = 57/364 (15%), Positives = 128/364 (35%), Gaps = 51/364 (14%)
Query: 87 GLPAFKKALVEFMSEIRG-----NKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLP 141
G+P L + ++ + + +T+G+ + + PG+ LL
Sbjct: 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLD 138
Query: 142 TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQIT--ETAIEE--AYQLAQKRHLKVKGVLV 197
P Y G + L G I+ + +G + + K L
Sbjct: 139 EPAYSGTLQSLHPL-GCNIINVASDE-SGIVPDSLRDILSRWKPEDAKNPQKNTPK-FLY 195
Query: 198 TNPS--NPLGTTMS---RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 252
T P+ NP G +++ + E+ + + + +I D+ Y F+ + + + D
Sbjct: 196 TVPNGNNPTGNSLTSERKKEI---YELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVD 252
Query: 253 RNCENTQVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDMV--VAAATKMSSFGLVSSQT 308
RV + S SK + G R+G + ++ V ++S+ S+
Sbjct: 253 ---------GRV--IRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLH-PSTFN 299
Query: 309 QYLLSALLSDKKFT--QNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGLFCWVD 363
Q ++S LL + ++ + +++ +K AG+F W+
Sbjct: 300 QLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK 359
Query: 364 MRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG---WFRVCFANMSEDTLKLS 420
++ + E + ++ PG++ + + R F++ S + + ++
Sbjct: 360 VKGINDVKELIEEKAVKMGVLM------LPGNAFYVDSSAPSPYLRASFSSASPEQMDVA 413
Query: 421 MQRL 424
Q L
Sbjct: 414 FQVL 417
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 61/425 (14%), Positives = 129/425 (30%), Gaps = 59/425 (13%)
Query: 28 KNPYDEVQNPTGIIQM--GL-AENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD 84
+ Y+ + + M G A+ FDL L A + DG L
Sbjct: 15 RQAYEAFKARGLNLNMQRGQPADAD--FDLSNGLLTV-LGAEDVRMDGL------DLRN- 64
Query: 85 YH----GLPAFKKALVEFMSE-----IRGNKVTFDTSKIVLTAGATSANETLMFCLAEPG 135
Y GLP+ + ++ + N + + +VLT
Sbjct: 65 YPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQT 124
Query: 136 EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195
++ P Y L+ G E++ + S +G A+E VKG+
Sbjct: 125 PKMIVTVPGYDRHFLLLQTL-GFELLTVDMQS-DG--PDVDAVERL----AGTDPSVKGI 176
Query: 196 -LVTNPSNPLGTTMSRNELNLLVNIITEK-NIHLISDEIYSGTVFSSPGFVSIMEILKDR 253
V SNP G T+S + L + + + +D+ Y + +
Sbjct: 177 LFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVL- 235
Query: 254 NCENTQVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQ-TQY 310
+ +R S SK G +G + S++D + + + + + ++ Q
Sbjct: 236 -ARDAGYPDRA--FVFASTSKIT-FAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQA 291
Query: 311 LLSALLSDKK-FTQNYISENKKRLKQRHRKLVSGLEKA------GISCLKSNAGLFCWVD 363
L++ + + ++ + + R + L + G F +D
Sbjct: 292 RHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLD 351
Query: 364 MRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW----FRVCFANMSEDTLKL 419
+ + + +P + + R+ + ++
Sbjct: 352 TAEPVADRVVKLAEA--AGVSL------TPAGATYPAGQDPHNRNLRLAPTRPPVEEVRT 403
Query: 420 SMQRL 424
+MQ +
Sbjct: 404 AMQVV 408
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 7e-21
Identities = 58/400 (14%), Positives = 124/400 (31%), Gaps = 61/400 (15%)
Query: 52 FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDY---HGLPAFKKALVEFMSEIRGNKVT 108
D + L DG + Y G+ ++ + + +
Sbjct: 48 LDFADELLALPGKGDFKAADGT------DVRN-YGGLDGIVDIRQIWADLLGVPVEQVLA 100
Query: 109 FDTSKIVLTAGATSA------NETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVP 162
D S + + S N+++ E ++ P P Y + G E++
Sbjct: 101 GDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF-GFEMIS 159
Query: 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV-LVTNPSNPLGTTMS---RNELNLLVN 218
+ +G + A+EE + + VKG+ +V SNP G T++ L+ +
Sbjct: 160 VPMNE-DGPDMD--AVEEL--VKNPQ---VKGMWVVPVFSNPTGFTVTEDVAKRLSAMET 211
Query: 219 IITEKNIHLISDEIYSGTVFS--SPGFVSIMEILKDRNCENTQVWNRVHIVY--SLSKDL 274
+ ++ D Y+ + P + I+ + + N S SK
Sbjct: 212 --AAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN-------RFWAFTSTSKIT 262
Query: 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQ-TQYLLSALLSDKKFTQNYISENKKRL 333
L G V ++ + G+ ++ Q + D + + + ++ L
Sbjct: 263 -LAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASL 321
Query: 334 KQRHRKLVSGLEK-----AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVK 388
+ K++ L+ G F +D+ S E E I
Sbjct: 322 APKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKE--AGIAL--- 376
Query: 389 LNISPGSSCHCTEPG----WFRVCFANMSEDTLKLSMQRL 424
+ S + R+ + + L+++M +
Sbjct: 377 ---TGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGV 413
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 66/393 (16%), Positives = 132/393 (33%), Gaps = 72/393 (18%)
Query: 64 DAAGFKRDGQSIFREL--ALFQDY---HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118
I RE Q Y G + + E++ ++++T
Sbjct: 48 PKEEAAEAAARILREKGEVALQ-YSPTEGYAPLRAFVAEWIGV--------RPEEVLITT 98
Query: 119 GATSANETLMFCLAEPGEAFLLPTPYYPG----FDRDLKWRTGVEIVPIQCTSLNGFQIT 174
G+ A + + + G LL P Y G F G + + G +
Sbjct: 99 GSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRL-----QGPRFLTVPAGE-EGPDLD 152
Query: 175 ETAIEEAYQLAQKRHLKVKGVLVTNPS--NPLGTTMSRNELNLLVNIITEKNIHLISDEI 232
A+EE KR + + L PS NP G L+ ++ E+ + ++ D+
Sbjct: 153 --ALEEVL----KRE-RPR-FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDA 204
Query: 233 YSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDM 290
Y F S+ E+ ++ ++Y S SK L PG RV ++ +
Sbjct: 205 YRELYFGEARLPSLFELAREAGYP--------GVIYLGSFSKVLS-PGLRVAFAVAHPEA 255
Query: 291 VVAAAT-KMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK--- 346
+ K + Q L+ LL + + ++ +++ + ++ L++
Sbjct: 256 LQKLVQAKQGADLHTPMLNQMLVHELLKEG--FSERLERVRRVYREKAQAMLHALDREVP 313
Query: 347 AGISCLKSNAGLFCWV------DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400
+ + G+F W+ L R A L + + + PG
Sbjct: 314 KEVRYTRPKGGMFVWMELPKGLSAEGLFR----RA---LEENVAF------VPGGPFFAN 360
Query: 401 EPG--WFRVCFANMSEDTLKLSMQRLKAFVDSI 431
G R+ +A + + + ++RL + +
Sbjct: 361 GGGENTLRLSYATLDREGIAEGVRRLGRALKGL 393
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 60/360 (16%), Positives = 130/360 (36%), Gaps = 45/360 (12%)
Query: 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL-TAGATSANETLMFCLAEP-----GEAF 138
GLP ++A ++ R + +T D +L G+ A + + + P A
Sbjct: 65 TAGLPELRQACANWLKR-RYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAI 123
Query: 139 LLPTPYYP----GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194
+ P P+Y G EI C + + + EE ++ + K
Sbjct: 124 VSPNPFYQIYEGAT-----LLGGGEIHFANCPAPSFNPDWRSISEEVWK-------RTKL 171
Query: 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254
V V +P+NP G+ + + + ++ + + SDE YS F + ++
Sbjct: 172 VFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLG 231
Query: 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA-AATKMSSFGLVSSQTQYLLS 313
++ + SLSK +PG R G + + +++ + +S Q
Sbjct: 232 RSRQ----KLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASI 287
Query: 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTF 373
A D + ++ +N++ +++ +++ L++ +A + W+ + +
Sbjct: 288 AAWDD----EQHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLK---VPDGDDL 339
Query: 374 EAEMELWKKIVYDVKLNISPGS----SCHCTEPGWFRVCFA-NMSEDTLKLSMQRLKAFV 428
LW+K ++ + PG PG V A T + + + +
Sbjct: 340 AFARNLWQK--AAIQ--VLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 6e-19
Identities = 61/367 (16%), Positives = 123/367 (33%), Gaps = 58/367 (15%)
Query: 85 YHGLP--AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPT 142
Y F A+ + S + D+ +V L+ +E GE ++ T
Sbjct: 61 YSRWKNDEFLAAIAHWFS--TQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHT 118
Query: 143 PYYPGFDRDLKWRTGVEIVPIQCTSLNG-FQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
P Y F + ++ ++P+ + +E LA+ + K +L+ +P
Sbjct: 119 PAYDAFYKAIE-GNQRTVMPVALEKQADGWFCDMGKLEA--VLAKP---ECKIMLLCSPQ 172
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261
NP G + +EL ++ ++ + +ISDEI+ V+ + + +
Sbjct: 173 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARG--------- 223
Query: 262 NRVHIVYSLSKDLGLPGFRVG-AIYSNDDM---------VVAAATKMSSFGLVSSQTQYL 311
++ S SK +P I N + S L + Y
Sbjct: 224 -DWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQ 282
Query: 312 -----LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDM 364
L AL Y+ +N + + + A ++ + W+D+
Sbjct: 283 QGAPWLDALRI-------YLKDNLTYIADK-------MNAAFPELNWQIPQSTYLAWLDL 328
Query: 365 RHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424
R L + L K ++ K+ I PG + G+ R+ L+ + L
Sbjct: 329 RPLNIDDN-----ALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGL 382
Query: 425 KAFVDSI 431
+ ++
Sbjct: 383 INAIRAV 389
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 8e-19
Identities = 67/360 (18%), Positives = 123/360 (34%), Gaps = 52/360 (14%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF 148
+ KA+ ++ ++ V +G A ++ PG+ L+ P Y F
Sbjct: 65 AEYYKAVADWEE--IEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMF 122
Query: 149 DRDLKWRTGVEIVPIQCTSLNG-FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT 207
++ G ++ N + + +EE +LA V+ ++ NP NP+G
Sbjct: 123 YSVIE-GNGRRVISSDLIYENSKYSVNWADLEE--KLATP---SVRMMVFCNPHNPIGYA 176
Query: 208 MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267
S E+ + + + + LISDEI+ V + + D N V +
Sbjct: 177 WSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWD-------AKNWVVSL 229
Query: 268 YSLSKDLGLPGFRVGAIYSNDD---------MVVAAATKMSSFGLVSSQTQYL-----LS 313
S SK L + +A + + + ++ Y L
Sbjct: 230 ISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLR 289
Query: 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLRSN 371
L + +N ++ L K + L SNA WVD+ L +
Sbjct: 290 ELKQ-------VLRDNFAYAREF-------LAKEVPEVKVLDSNASYLAWVDISALGMNA 335
Query: 372 TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
+ K + L IS G+ + R+ A ++ + MQRLK V ++
Sbjct: 336 E-----DFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRLKQGVLNL 389
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 65/355 (18%), Positives = 129/355 (36%), Gaps = 52/355 (14%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF 148
+A++++ ++ +FD IV G A + + GEA L+ +P YP F
Sbjct: 69 DELLQAVLDWEK--SEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPF 126
Query: 149 DRDLKWRTGVEIVPIQCTSLNG-FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT 207
R ++ ++V NG FQI +E + + VK L+ NP NP G
Sbjct: 127 ARSVR-LNNRKLVSNSLKEENGLFQIDFEQLEN--DIVEND---VKLYLLCNPHNPGGRV 180
Query: 208 MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267
R L + ++ + ++ L+SDEI+ VS + D + ++
Sbjct: 181 WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPD-------FKDFALVL 233
Query: 268 YSLSKDLGLPGFRVGAIYSNDD---------MVVAAATKMSSFGLVSSQTQYL-----LS 313
S +K + G + + +V ++SS G ++++T Y L
Sbjct: 234 SSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLV 293
Query: 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLRSN 371
AL + + EN + + + + +K W+D ++
Sbjct: 294 ALKA-------VLEENIQFAVEY-------FAQEAPRLKVMKPQGTYLIWLDFSDYGLTD 339
Query: 372 TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426
L+ + K+ ++ GS R+ A + ++ +R+
Sbjct: 340 D-----ALFTLLHDQAKVILNRGSDYGSEGELHARLNIA-APKSLVEEICKRIVC 388
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 9e-18
Identities = 64/359 (17%), Positives = 136/359 (37%), Gaps = 55/359 (15%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF 148
++ +++V ++ R + + ++ + G A L+ L + + ++ P Y F
Sbjct: 70 DSYNESIVNWLY--RRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPF 127
Query: 149 DRDLKWRTGVEIV--PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ +K E++ P+Q + + IE ++ VK ++ NP NP+G
Sbjct: 128 NSVVK-NNNRELIISPLQKLENGNYIMDYEDIEN--KIKD-----VKLFILCNPHNPVGR 179
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
+++EL L +I + N+ +ISDEI+S + + + I K+
Sbjct: 180 VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKE-------FEKNTIT 232
Query: 267 VYSLSKDLGLPGFRVGAIYSNDD---------MVVAAATKMSSFGLVSSQTQYL-----L 312
+ +K + G + + D+ + + F LV+++ Y L
Sbjct: 233 CMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWL 292
Query: 313 SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLRS 370
+ L Y+ N + + + + K WVD L S
Sbjct: 293 ESFLE-------YLESNIDFAIKY-------INENMPKLKVRKPEGTYLLWVDFSALGLS 338
Query: 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429
+ EL +V K+ ++ G+S G+ R+ A L+ ++ R+K ++
Sbjct: 339 DE-----ELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKNAIN 391
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 2e-17
Identities = 59/360 (16%), Positives = 127/360 (35%), Gaps = 52/360 (14%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF 148
+KK + ++M ++ T I+ TAG A + +PG+ ++ TP Y F
Sbjct: 69 EEYKKTVKKWMK--DRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPF 126
Query: 149 DRDLKWRTGVEIVPIQCTSLNG-FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT 207
+K +I+ + +G + I +E+ K K +L +P NP+G
Sbjct: 127 FMAIK-NQERKIIECELLEKDGYYTIDFQKLEK--LSKDK---NNKALLFCSPHNPVGRV 180
Query: 208 MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267
++EL + +I+ + ++ L SDEI+ + I + + ++
Sbjct: 181 WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ-------LADKTITF 233
Query: 268 YSLSKDLGLPGFRVGAIYSNDD---------MVVAAATKMSSFGLVSSQTQYL-----LS 313
+ SK + G + I + + ++ G + + Y L
Sbjct: 234 TAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLD 293
Query: 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLRSN 371
+ I +N++ +K E I W+D R L +
Sbjct: 294 GCIK-------VIDKNQRIVKDF-------FEVNHPEIKAPLIEGTYLQWIDFRALKMDH 339
Query: 372 TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
+ + +++ ++ G G+ R+ A ++ S++RL + +
Sbjct: 340 K-----AMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERLNKALKDL 393
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 54/353 (15%), Positives = 128/353 (36%), Gaps = 49/353 (13%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF 148
+A++++ + + I+ G A + +E G+A L+ +P Y F
Sbjct: 99 DDLYQAVIDWER--KEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPF 156
Query: 149 DRDLKWRTGVEIVPIQCTSLNG-FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT 207
R ++ +V +NG F+I +E+ + VK L+ +P NP G
Sbjct: 157 ARTIR-LNDHRLVENSLQIINGRFEIDFEQLEK--DIIDN---NVKIYLLCSPHNPGGRV 210
Query: 208 MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267
++L + + + + L+SDEI+ S+ + + I+
Sbjct: 211 WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDAS-------YKDFTIIL 263
Query: 268 YSLSKDLGLPGFRVGAIYSNDD---------MVVAAATKMSSFGLVSSQTQYL-----LS 313
S +K + G + ++ + ++ + G++++Q + L
Sbjct: 264 SSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLE 323
Query: 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTF 373
L + I N K + + I ++ W+D +
Sbjct: 324 ELKT-------VIEGNIKLVIKELEAK------TKIKVMEPEGTYLVWLDFSAYAIAQP- 369
Query: 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426
+L +K+ + K+ ++ G+ + R+ A ++T++ ++ R+ +
Sbjct: 370 ----QLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNTVQEALSRIIS 417
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 65/360 (18%), Positives = 119/360 (33%), Gaps = 59/360 (16%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF 148
+A EF ++ R I + ++PTP YP F
Sbjct: 61 SLLSQATAEFYAD-RYG-YQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPF 118
Query: 149 DRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM 208
L T E + I I +E+ +Q + +L+ NP NPLG
Sbjct: 119 FHLLS-ATQREGIFID----ATGGINLHDVEKGFQA------GARSILLCNPYNPLGMVF 167
Query: 209 SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTQVWNRVHIV 267
+ LN L ++ + ++ DEI++ VF G + + + +
Sbjct: 168 APEWLNELCDLAHRYDARVLVDEIHAPLVF--DGQHTVAAGV-------SDTAASVCITI 218
Query: 268 YSLSKDLGLPGFRVG-AIYSNDD-------MVVAAATKMSSFGLVSSQTQYL-----LSA 314
+ SK + G + I+SN + S+ GL++++ Y L+
Sbjct: 219 TAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQ 278
Query: 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLRSNT 372
++ Y+ N L + K G A W+D R
Sbjct: 279 EVA-------YLKNNHDFLLHE-------IPKRIPGAKITPMQATYLMWIDFRDTTIEG- 323
Query: 373 FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432
+ + K+ ++ G+ G+ R+ FA S + L+ ++ R+ V T
Sbjct: 324 -----SPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA-TSREVLEEAIDRMAKAVSHHT 377
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-17
Identities = 56/364 (15%), Positives = 111/364 (30%), Gaps = 55/364 (15%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTS------KIVLTAGATSANETLMFCLAEPGEAFLL 140
G+ ++ E + V D S ++ + N++ AE +L
Sbjct: 77 GIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLC 136
Query: 141 PTPYYPG----FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV- 195
P P Y + G E++ + + + E + + VKG+
Sbjct: 137 PVPGYDRHFTITEH-----FGFEMINV---PMTDEGPDMGVVREL--VKDPQ---VKGMW 183
Query: 196 LVTNPSNPLGTTMSRNELNLLVNIITE-KNIHLISDEIYSGTVFS--SPGFVSIMEILKD 252
V NP G T S L + T + ++ D Y+ S P +++E +
Sbjct: 184 TVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQA 243
Query: 253 RNCENTQVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQ-TQ 309
N + S SK G V S+ + + A+ + G+ ++ Q
Sbjct: 244 AGNPN-------RFWFMSSTSKIT-HAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQ 295
Query: 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-----AGISCLKSNAGLFCWVDM 364
+ D + ++ ++ L + +++ L+ G F VD+
Sbjct: 296 LAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDV 355
Query: 365 RHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG----WFRVCFANMSEDTLKLS 420
S E E I + S R+ + L+++
Sbjct: 356 VPGTASRVVELAKE--AGIAL------TGAGSSFPLHNDPNNENIRLAPSLPPVAELEVA 407
Query: 421 MQRL 424
M
Sbjct: 408 MDGF 411
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 36/253 (14%)
Query: 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLN 169
S I+ G T + T+ L P A ++ TP + + R L ++G EI +
Sbjct: 75 PASWILAGNGETESIFTVASGLK-PRRA-MIVTPGFAEYGRALA-QSGCEIRRWSLREAD 131
Query: 170 GFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLIS 229
G+Q+T+ +E + + + P+NP G R L + + NI+LI
Sbjct: 132 GWQLTDAILEALTP-------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLIL 184
Query: 230 DEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD 289
DE + + P + LKD + ++ SL+K +PG R+G + ++DD
Sbjct: 185 DEAFIDFI---PHETGFIPALKDN--------PHIWVLRSLTKFYAIPGLRLGYLVNSDD 233
Query: 290 MVVAAATKMSSFGL---VSSQTQYLLSALLSDKKF---TQNYISENKKRLKQRHRKLVSG 343
+A +M + V++ L D + T +++ E R Q +L
Sbjct: 234 AAMA---RMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL--- 287
Query: 344 LEKAGISCLKSNA 356
++ A
Sbjct: 288 ---PLLTVYPGRA 297
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 58/331 (17%), Positives = 124/331 (37%), Gaps = 55/331 (16%)
Query: 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLN 169
IVL GA +E ++ E L+ P Y ++ + K + GV +V
Sbjct: 77 KDIGIVLGNGA---SE-IIELSISLFEKILIIVPSYAEYEINAK-KHGVSVVFSYLD--E 129
Query: 170 GFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLIS 229
I I V V++ NP+NP G +++ + ++ + EK +I
Sbjct: 130 NMCIDYEDIISKID-------DVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIII 182
Query: 230 DEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG-AIYSND 288
DE + F+ S + +K+ + + I+ +++K +PG R G I +N
Sbjct: 183 DEAFIE--FTGDPSSSFVGEIKNY--------SCLFIIRAMTKFFAMPGIRFGYGITNNK 232
Query: 289 DMVVAAATKMSSFGL---VSSQTQYLLSALLSDKKF---TQNYISENKKRLKQRHRKLVS 342
++ A K+ + ++ + L D + + +I + +KR +
Sbjct: 233 EI----AAKIKAKQNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIE------- 281
Query: 343 GLEKAGI--SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400
L K G +A F + ++ +++ ++ + IV I +
Sbjct: 282 ELNKIGFIKRVFSPHAN-FVLCRLENISGEKLYDSLLK--EDIV------IRRCCNFIGL 332
Query: 401 EPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
+ + R + + K ++ LK +++
Sbjct: 333 DDSFVRFAIKDE-KKNTKF-LRALKGVENNL 361
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 7e-13
Identities = 48/301 (15%), Positives = 104/301 (34%), Gaps = 47/301 (15%)
Query: 110 DTSKIVLTAGATSANETL-MFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSL 168
D + I++T G T A G L+ P + ++ + E+
Sbjct: 66 DNNAILVTNGPT---AAFYQIAQAFRGSRSLIAIPSFAEYEDACR-MYEHEVCFYPSNED 121
Query: 169 NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLI 228
G + + NP+NP G + R E+ L+N + +
Sbjct: 122 IGEADFS---------------NMDFCWLCNPNNPDGRLLQRTEILRLLN--DHPDTTFV 164
Query: 229 SDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSND 288
D+ Y F++ + +I +N + +VYS S G+PG R+G I +N
Sbjct: 165 LDQSYVS--FTTEEVIRPADIKGRKN---------LVMVYSFSHAYGIPGLRIGYIVANK 213
Query: 289 DMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-A 347
D + A + + V++ +L + ++ ++ ++ L +
Sbjct: 214 DFMKRVAAFSTPWA-VNALAIEAAKFILIH----PAQFTLPIRKWQRNTVDFITALNRLD 268
Query: 348 GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 407
G+ S F + ++ + + +E + ++ D S+ + + R+
Sbjct: 269 GVEVHPSGTT-FFLLRLKKGTAAELKKYMLEEYNMLIRDA-------SNFRGLDESYVRI 320
Query: 408 C 408
Sbjct: 321 T 321
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 28/257 (10%)
Query: 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP---YYPGFDRDLKWRTGVEIVPIQCT 166
+ I+LTAG++ + A ++P F + G+++ ++
Sbjct: 67 EAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK----IAGMKVTKVKML 122
Query: 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIH 226
+ ++ A +A + V + NP+NP GT + + + N
Sbjct: 123 D--NWAFDIEGLKAA--VAAYSGPSI--VYLVNPNNPTGTITPADVIEPWIASKPA-NTM 175
Query: 227 LISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS 286
I DE Y+ V + P F SI ++ EN + ++ + SK + G RVG +
Sbjct: 176 FIVDEAYAEFV-NDPRFRSISPMITQG-AEN------IILLKTFSKIHAMAGMRVGYAVA 227
Query: 287 NDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK 346
+ ++ ++ ++ A ++D F N + L+ LE
Sbjct: 228 HPTVIALMGRYVAGEK-INFSGVDAALASMNDSAFITYSKKSNDVSRQI----LLKALED 282
Query: 347 AGISCLKSNAGLFCWVD 363
+ L S F +
Sbjct: 283 LKLPYLPSEGN-FVFHQ 298
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 47/262 (17%), Positives = 100/262 (38%), Gaps = 38/262 (14%)
Query: 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP---YYPGFDRDLKWRTGVEIVPIQCT 166
I++ AG+ E + AFL Y + + + G + Q
Sbjct: 81 QNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK----QCGAKCYKTQSI 136
Query: 167 SLNGFQITE--TAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN 224
+ N + + ++ ++K + + P+NPLG + +E + + ++
Sbjct: 137 THNLDEFKKLYETHKD----------EIKLIFLCLPNNPLGECLDASEATEFIKGV-NED 185
Query: 225 IHLISDEIYS--GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG 282
++ D Y+ + S + E++K+ +N V + + SK GL G R+G
Sbjct: 186 CLVVIDAAYNEFASFKDSKKHLEPCELIKEF--DN------VLYLGTFSKLYGLGGLRIG 237
Query: 283 AIYSNDDMVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLV 341
+N + +++A K+ + F VS+ A + D +FT+ + N +++
Sbjct: 238 YGIANAN-IISAFYKLRAPFN-VSNLALKAAVAAMDDDEFTEKTLENNFSQMEL----YK 291
Query: 342 SGLEKAGISCLKSNAGLFCWVD 363
+K I + S F
Sbjct: 292 EFAKKHNIKIIDSYTN-FITYF 312
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 45/258 (17%), Positives = 90/258 (34%), Gaps = 33/258 (12%)
Query: 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP---YYPGFDRDLKWRTGVEIVPIQCT 166
+ +++ TAG E L L + ++ TP Y G E+ I
Sbjct: 83 EEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNAL----IEGAEVREIPLL 138
Query: 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIH 226
+ + A K V + NP+NP G + ++ ++ + ++
Sbjct: 139 --QDGEHDLEGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRV-PSDVL 189
Query: 227 LISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS 286
++ DE Y + +P ++++ +N + I + SK GL RVG +
Sbjct: 190 VVLDEAY--IEYVTPQPEKHEKLVRTY--KN------LIITRTFSKIYGLASARVGYGIA 239
Query: 287 NDDMVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345
+ + ++ + F +S Q L + D+ F + N +KQ
Sbjct: 240 DKE-IIRQLNIVRPPFN-TTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA---KR 294
Query: 346 KAGISCLKSNAGLFCWVD 363
+ +N F +D
Sbjct: 295 FEKVKLYPANGN-FVLID 311
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 59/308 (19%), Positives = 114/308 (37%), Gaps = 62/308 (20%)
Query: 47 EN--QLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRG 104
E + F L + L+R P+ +++ A Y G+
Sbjct: 38 EYPTAVEFQLTQQTLNRYPE-----CQPKAVIENYA---QYAGVKP-------------- 75
Query: 105 NKVTFDTSKIVLTAGATSANETLMFCLAEPG-EAFLLPTPYYP--GFDRDLKWRTGVEIV 161
+++++ GA E L+ EPG +A L P Y + GVE
Sbjct: 76 -------EQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAET---IGVECR 125
Query: 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIIT 221
+ + +Q+ I + VK V V +P+NP G ++ + L+ +
Sbjct: 126 TVPTL--DNWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR 176
Query: 222 EKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV 281
K I +++DE Y F S+ L + + + I+ +LSK L G R
Sbjct: 177 GKAI-VVADEAY--IEFCPQA--SLAGWLAE--------YPHLAILRTLSKAFALAGLRC 223
Query: 282 GAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLV 341
G +N++ V+ K+ + +S+ + + LS + + E ++ L+
Sbjct: 224 GFTLANEE-VINLLMKVIAPYPLSTPVADIAAQALSPQGIVA--MRERVAQIIAEREYLI 280
Query: 342 SGLEKAGI 349
+ L++
Sbjct: 281 AALKEIPC 288
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 53/279 (18%), Positives = 100/279 (35%), Gaps = 38/279 (13%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP---YY 145
+ L ++++ G VT D + G+ + L+ PG L P +
Sbjct: 72 VELRDELAAYITKQTGVAVTRD--NLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMH 129
Query: 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG 205
P + T E + + + F+I E + + V VT P+NP G
Sbjct: 130 PILAKG----THTEFIAVSRGA--DFRIDMDVALEEI----RAK-QPDIVFVTTPNNPTG 178
Query: 206 TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265
S +++ II +I DE Y FS S +L+ ++
Sbjct: 179 DVTSLDDV---ERIINVAPGIVIVDEAY--AEFSPSP--SATTLLEKYP-------TKLV 224
Query: 266 IVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFTQN 324
+ ++SK G R+G +N + A + + +S+ +Q L T
Sbjct: 225 VSRTMSKAFDFAGGRLGYFVANPA-FIDAVMLVRLPYH-LSALSQAAAIVALRHSADTLG 282
Query: 325 YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 363
+ + +R R + + LE+ G + + S + F +
Sbjct: 283 TVEKLS---VERVR-VAARLEELGYAVVPSESN-FVFFG 316
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 24/193 (12%)
Query: 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN 224
G + E + + ++ + + V + NP+NP G R E+ ++ +
Sbjct: 112 FAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERIL----KTG 167
Query: 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAI 284
+ DE Y F S ++ LK EN + ++ + SK L RVG +
Sbjct: 168 AFVALDEAYYE--FHGE---SYVDFLKKY--EN------LAVIRTFSKAFSLAAQRVGYV 214
Query: 285 YSNDDMVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSG 343
+++ + A ++ F VS +Q L ++ + ++R R + S
Sbjct: 215 VASEK-FIDAYNRVRLPFN-VSYVSQMFAKVALDHREIFEERTKFIV---EERER-MKSA 268
Query: 344 LEKAGISCLKSNA 356
L + G S
Sbjct: 269 LREMGYRITDSRG 281
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 6e-08
Identities = 53/292 (18%), Positives = 101/292 (34%), Gaps = 53/292 (18%)
Query: 125 ETLMFCLAEPGEAFLLPTP---YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEA 181
L A PG + P P Y + G+E V + + F + A+ A
Sbjct: 99 SMLALAAARPGAKVMAPVPGFVMYAMSAQF----AGLEFVGVPLRA--DFTLDRGAMLAA 152
Query: 182 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIH--LISDEIYSGTVFS 239
H + V + P+NP G ++ +V ++ DE Y F+
Sbjct: 153 M----AEH-QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAY--QPFA 205
Query: 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM- 298
++S + + N + ++ ++SK LGL G R+G + + + K+
Sbjct: 206 QESWMSRL-----TDFGN------LLVMRTVSK-LGLAGIRLGYVAGDPQ-WLEQLDKVR 252
Query: 299 SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAG 357
+ V+ T+ L ++ + +R R + G+ G++ S A
Sbjct: 253 PPYN-VNVLTEATALFALEHVAVLDEQAAQLR---AERSR-VAEGMAAHGGVTVFPSAAN 307
Query: 358 LFCWVDMRHLLRSNTFEAEMELWKK--IVYDVKLNISPGSSCHCTEPGWFRV 407
F + + TF+ L + ++ +V S H RV
Sbjct: 308 -FLLARVPD--AAQTFDR---LLARKVLIKNV-------SKMHPLLANCLRV 346
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 53/262 (20%), Positives = 91/262 (34%), Gaps = 47/262 (17%)
Query: 109 FDTSKIVLTAGATSANETL-MFCLAEPGEAFLLPTP---YYPGFDRDLKWRTGVEIVPIQ 164
++L G +E F+ P Y +G+ I
Sbjct: 66 CPEDNLMLVRGI---DECFDRISAEFSSMRFVTAWPGFDGYRARIA----VSGLRHFEIG 118
Query: 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN 224
T + + + + + V++ NPSNP G +S EL+ L ++
Sbjct: 119 LT--DDLLLDPNDLAQVS--------RDDCVVLANPSNPTGQALSAGELDQLR----QRA 164
Query: 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAI 284
L+ DE Y +SS + EN + S SK GL G R+GA+
Sbjct: 165 GKLLIDETYVD--YSSFRARGL------AYGEN------ELVFRSFSKSYGLAGLRLGAL 210
Query: 285 YSNDDMVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSG 343
+ + ++AA + V + + L A L + + + +I++ QR R +
Sbjct: 211 FGPSE-LIAAMKRKQWFCN-VGTLDLHALEAALDNDRAREAHIAKTL---AQRRR-VADA 264
Query: 344 LEKAGISCLKSNAGLFCWVDMR 365
L G S A F V+
Sbjct: 265 LRGLGYRVASSEAN-FVLVENA 285
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 62/438 (14%), Positives = 142/438 (32%), Gaps = 117/438 (26%)
Query: 2 GLL-SGK-----ATCNTHGQDSSYFLG--WQEYEKNPYDEVQNPTGIIQMGLAENQLSFD 53
G+L SGK C ++ W + +P +++M +L +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-----CNSPETVLEM---LQKLLYQ 208
Query: 54 LLESWLDRNPDAAGFKRDGQSIFRELA-LFQDYHGLPAFKKALVEFMSEIRGNKV--TFD 110
+ +W R+ ++ K SI EL L + ++ L+ + ++ K F+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS----KPYENCLL-VLLNVQNAKAWNAFN 263
Query: 111 -TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD------LKW-RTGVEIVP 162
+ KI+L T+ + + L+ + + D LK+ + +P
Sbjct: 264 LSCKILL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 163 IQCTSLNGFQIT------------------------ETAIEEAY-QLA---QKRHLKVKG 194
+ + N +++ T IE + L ++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 195 VLVTNPSN---PLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF---SSPGFVSIME 248
V P + P L+L+ + + ++ ++ ++++ ++ +SI
Sbjct: 380 VF---PPSAHIPTIL------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 249 ILKD--RNCENTQVWNRV---------------------------HIVYSLSK---DLGL 276
I + EN +R HI + L +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQR 336
FR ++ + + K+ + + +L+ L KF + YI +N + ++
Sbjct: 491 TLFR--MVFLDFRFLEQ---KIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERL 544
Query: 337 HRKLVSGLEKAGISCLKS 354
++ L K + + S
Sbjct: 545 VNAILDFLPKIEENLICS 562
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 50/254 (19%), Positives = 85/254 (33%), Gaps = 48/254 (18%)
Query: 110 DTSKIVLTAGATSANETLMF---CLAEPGEAFLLPTP---YYPGFDRDLKWRTGVEIVPI 163
D S I++ G+ +E L A GE P YY G +
Sbjct: 81 DPSWIIMANGS---DEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE----VQGARVRTF 133
Query: 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK 223
T F+I + K +T P+ PLG + + +
Sbjct: 134 GLT--GDFRIAGFPERY----------EGKVFFLTTPNAPLGPSFPLEY---IDELARRC 178
Query: 224 NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGA 283
L+ DE Y+ F+ + +E+++ EN V + +LSK L G R+G
Sbjct: 179 AGMLVLDETYAE--FAES---NALELVRRH--EN------VVVTRTLSKSYSLAGMRIGL 225
Query: 284 IYSNDDMVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVS 342
+ + V+AA K+ + + Q A L D+ + + + R +
Sbjct: 226 AIARPE-VIAALDKIRDHYN-LDRLAQAACVAALRDQAYLSECCRRIR---ETREW-FTT 279
Query: 343 GLEKAGISCLKSNA 356
L G + S
Sbjct: 280 ELRSIGYDVIPSQG 293
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 49/255 (19%)
Query: 114 IVLTAGATSANETLMFCLAEPGEAFLLP-----TPYYPGFDRDLKW-RTGVEIVPIQCTS 167
+T GA A +M LA+ ++ + Y R G+ I + T
Sbjct: 72 ARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA-------AERAGLNIALVPKTD 124
Query: 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHL 227
+ IT + + +KR +V L+T P G ++ + + +E ++ L
Sbjct: 125 YPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNL---PDVKKIAKVCSEYDVPL 180
Query: 228 ISDEIYSGTVFSSPGFVSIMEI-LKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS 286
+ + Y+ + M + LK+ + IV S K + G +G +
Sbjct: 181 LVNGAYA---------IGRMPVSLKEIGAD--------FIVGSGHKSMAASG-PIGVMGM 222
Query: 287 NDDMVVAAATKMSSF---------GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRH 337
++ + + T L A + I + ++ +
Sbjct: 223 KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASF---PHVRERIKRWDEEVE-KA 278
Query: 338 RKLVSGLEKAGISCL 352
R+ + +EK GI L
Sbjct: 279 RRFAAEMEKLGIKQL 293
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 266 IVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYL-------------- 311
+ YSLSK + G RVGA+ + ++ +++ +
Sbjct: 256 VCYSLSKGFTMYGQRVGAM-----IGISDDEEIAD--EFFEVNKSTSRATWSNICRPAMR 308
Query: 312 -LSALLSDKKFTQNYISENK---KRLKQRHRKLVSGLEKAGISCLKSNAGLFC 360
++ +++D + Y +E + ++ R + G+ L G F
Sbjct: 309 TMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFI 361
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 29/223 (13%), Positives = 61/223 (27%), Gaps = 37/223 (16%)
Query: 115 VLTAGATSANETLMFCLAEPGEAFLLP----------------TPYY--PGFDRDLKWRT 156
+ G + +N T+M + ++ P Y P +R
Sbjct: 225 SVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNR----YG 280
Query: 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLL 216
+ + Q + I E+ K K +VTN G
Sbjct: 281 IIGPIYPQEMQPETL---QKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCY---NAKEA 333
Query: 217 VNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276
+++ + + L DE + G +P + + + N V +S K L
Sbjct: 334 QDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGP---TVFATHSTHK--LL 388
Query: 277 PGFRVGA---IYSNDDMVVAAATKMSSFGLVSSQTQYLLSALL 316
+ + + + + ++ Y + A
Sbjct: 389 NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASN 431
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.98 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.98 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.98 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.98 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.97 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.97 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.97 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.96 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.96 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.96 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.96 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.96 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.96 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.96 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.95 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.95 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.95 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.95 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.95 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.95 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.95 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.95 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.95 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.95 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.95 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.95 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.94 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.94 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.94 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.94 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.94 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.94 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.93 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.93 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.93 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.93 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.93 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.93 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.93 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.92 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.92 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.92 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.92 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.92 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.92 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.91 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.91 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.91 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.91 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.9 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.9 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.9 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.9 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.89 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.89 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.89 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.89 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.88 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.88 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.88 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.87 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.78 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.86 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.85 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.79 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.75 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.75 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.74 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.7 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.68 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.63 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.61 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.59 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.55 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.52 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 84.87 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 81.62 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-58 Score=467.48 Aligned_cols=432 Identities=81% Similarity=1.297 Sum_probs=352.3
Q ss_pred CCccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccc
Q 043923 1 MGLLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELA 80 (469)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (469)
|+|||.++.+.+++.++||+..|+.+..++|++..+|.++|+|+.++|+++.+.+.+++++.........+|........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (435)
T 3piu_A 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELA 80 (435)
T ss_dssp -----------------CTTHHHHHHHHSBCBTTTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHH
T ss_pred CCccchhhhhcccccCcchhhHHHHhhcCCCCcccCCCCeEEeccccccccHHHHHHHHHhCcccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999886543222212222234457
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHh-hhCCCE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLK-WRTGVE 159 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-~~~g~~ 159 (469)
.|++..|..+|++++|+++++.++.++++++++|++|+|+++|+..++.+++++||.|+++.|+|..+...+. .. |++
T Consensus 81 ~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~-g~~ 159 (435)
T 3piu_A 81 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRT-GVE 159 (435)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTT-CCE
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhc-CCE
Confidence 8999999999999999999987776667789999999999999999999999999999999999999988887 55 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
++.++++.+++|.+|++++++++++....+.++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+++.|+
T Consensus 160 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~ 239 (435)
T 3piu_A 160 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFS 239 (435)
T ss_dssp EEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS
T ss_pred EEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 99999987778899999999999876555668999999999999999999999999999999999999999999988887
Q ss_pred CCCccchhhhhhccccc-cCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcC
Q 043923 240 SPGFVSIMEILKDRNCE-NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSD 318 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~ 318 (469)
+..+.++..+..+.++. ..+..+++++++|+||+||++|+|+||++++++.+.+.+.....++..+++.|.++.+++.+
T Consensus 240 ~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 319 (435)
T 3piu_A 240 SPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSD 319 (435)
T ss_dssp SSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHC
T ss_pred CCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcC
Confidence 76666766664410000 00005788999999999999999999999977777777777766777889999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
..++.+++++.+++++++++++.+.|++.|+++.++.+|+|+|++++............+++..+++++||.+.||..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~ 399 (435)
T 3piu_A 320 KKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCH 399 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccC
Confidence 87767788889999999999999999999999999999999999998654333333456788888887899999999998
Q ss_pred CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 399 CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 399 ~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..+++++||+++..+++++++++++|++++++.++
T Consensus 400 ~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~~ 434 (435)
T 3piu_A 400 CTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYYN 434 (435)
T ss_dssp CSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHhC
Confidence 77789999999856999999999999999987653
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-55 Score=445.56 Aligned_cols=427 Identities=56% Similarity=1.048 Sum_probs=343.5
Q ss_pred ccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccC
Q 043923 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALF 82 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 82 (469)
+||+|++++......||+..|.++..++|++..++.++|+|+.|+|+++++.+.+++++.+...+.. ++...+.....|
T Consensus 1 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~Y 79 (428)
T 1iay_A 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANF 79 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHC
T ss_pred CcccccccccCcccccccchhhhhccCCCCcccCCCceeeeccccchhhHHHHHHHHHhcccccccc-ccccccHhhcCC
Confidence 6899999999888899999999999999999999889999999999999888999988654322111 111112345689
Q ss_pred CCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEE
Q 043923 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVP 162 (469)
Q Consensus 83 ~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~ 162 (469)
++..|..+|++++|+++++.++..+++++++|++|+|+++++..++.+++++||.|+++.|+|..+...+....|++++.
T Consensus 80 ~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~ 159 (428)
T 1iay_A 80 QDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEE
Confidence 98888999999999999988775544678999999999999999999999999999999999999987554323999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
+|++.+++|.+|++++++++++....++++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.|++..
T Consensus 160 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~ 239 (428)
T 1iay_A 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC
T ss_pred eecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCC
Confidence 99876567889999999998764334457899999999999999999999999999999999999999999987776554
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhh
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 322 (469)
+.++..+..... ...-..++++++.|+||+||++|+|+||++++++.+.+.+.....++.+++++|.++.+++.+..+.
T Consensus 240 ~~~~~~~~~~~~-~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 318 (428)
T 1iay_A 240 FVSIAEILDEQE-MTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFV 318 (428)
T ss_dssp CCCHHHHHTSGG-GTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred ccCHHHhccccc-cccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHH
Confidence 456555533100 0000147899999999999999999999999666666666655555668899999999999987755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
.+++++.++.++++++++.+.|+++|+++.++.+|+|+|++++............++++.+++++||.+.||..|+..++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~ 398 (428)
T 1iay_A 319 DNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEP 398 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence 67788899999999999999999989988888788999999975432122123446777777667999999998876557
Q ss_pred CeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 403 GWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 403 ~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+++||+++..+++++++++++|++++++.
T Consensus 399 ~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 399 GWFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp SEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence 89999998559999999999999998764
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-48 Score=388.92 Aligned_cols=350 Identities=18% Similarity=0.390 Sum_probs=286.1
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|+++++ ++.+.+++.+... .....|++..|..+||+++++++++.++ +.+++++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 96 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETIV 96 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEEE
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHHEEE
Confidence 47899999999875 4556665544210 1134688888999999999999987766 4467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|+++.|+|..+...++.. |++++.+|++.+++|.+|++++++++++ ++++|+
T Consensus 97 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 169 (385)
T 1b5p_A 97 TVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKALV 169 (385)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEEE
Confidence 999999999999999999999999999999999888877 9999999997656788999999988754 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++||||||.++|.+++++|+++|++||++||+||+|+++.+++ .+.++.++ . . +++++++||||+||+
T Consensus 170 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~-~--------~-~~~i~~~s~SK~~~~ 238 (385)
T 1b5p_A 170 VNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRV-A--------P-EHTLTVNGAAKAFAM 238 (385)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGT-C--------T-TTEEEEEESTTTTTC
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHc-C--------C-CCEEEEEechhhcCC
Confidence 99999999999999999999999999999999999999877765 44455544 1 2 789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
+|+|+||+++++. +.+.+..... .++++.+.|.++.++|.......+++++.++.++++++++.+.|+++|+++.++
T Consensus 239 ~G~RiG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 317 (385)
T 1b5p_A 239 TGWRIGYACGPKE-VIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRP 317 (385)
T ss_dssp GGGCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC
T ss_pred cccceEEEEeCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 9999999999544 4444444332 235788999998888875211145688889999999999999999889998889
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
++++|+|+.++.. . .+..++++.++ ++||.+.||..|+. ++++||+++ .+++++++++++|+++++
T Consensus 318 ~~~~~~~~~~~~~-~----~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~-~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 318 SGAFYVLMDTSPI-A----PDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYA-TSEENLRKALERFARVLG 383 (385)
T ss_dssp SBTTEEEEECTTT-C----SSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHGGGGC-
T ss_pred CeeEEEEEecCCC-C----CCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 9999999998631 0 12346777777 77999999999864 679999998 599999999999987764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=393.88 Aligned_cols=379 Identities=18% Similarity=0.283 Sum_probs=299.5
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
+++|+++.+...+|++.+..+.+..... . -.....|++..|..+||+++|++++++++ +++++++|++|
T Consensus 95 p~~i~~~~~~~~~p~~~~~~a~~~l~~~-----~----~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t 163 (500)
T 3tcm_A 95 PDLLQREEIKTLFSADSISRAKQILAMI-----P----GRATGAYSHSQGIHGLRDAIASGIASRDG--FPANADDIFLT 163 (500)
T ss_dssp GGGGGCTTHHHHSCHHHHHHHHHHHTTS-----T----TSCSSSCCCTTCCHHHHHHHHHHHHHHHS--SCCCGGGEEEE
T ss_pred cccccCCCCcccCCHHHHHHHHHHHHcC-----C----CCcCCCcCCCcChHHHHHHHHHHHHhhcC--CCCCcccEEEc
Confidence 4567777764444555555553332110 0 01356799999999999999999988876 45788999999
Q ss_pred CChHHHHHHHHHHhc-CCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 118 AGATSANETLMFCLA-EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 118 ~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+|+++++..++.+++ ++||.|+++.|+|..+...+... |.+++.++++++++|.+|+++|++++++....+.++++|+
T Consensus 164 ~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~iv 242 (500)
T 3tcm_A 164 DGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH-GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALV 242 (500)
T ss_dssp SSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHT-TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999998 89999999999999999998887 9999999999888899999999999987655556899999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC-CCccchhhhhhccccccCCcCCeEEEEccCcccc-
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL- 274 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~- 274 (469)
++||+||||.++|.+++++|+++|++||+++|+||+|.++.|++ ..+.++..+..+++. .....++++++|+||+|
T Consensus 243 l~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~i~~~S~SK~~~ 320 (500)
T 3tcm_A 243 VINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGY--GEEDLPLVSYQSVSKGYY 320 (500)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTC--SSSCCCEEEEEESSSTTT
T ss_pred EECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhcc--ccCCeEEEEEecCCccCC
Confidence 99999999999999999999999999999999999999988864 345666655442200 00224589999999999
Q ss_pred CCCcceEEEEEe---cCHHHHHHHHHh-cccccCcHHHHHHHHHHhcCch--------hhHHHHHHHHHHHHHHHHHHHH
Q 043923 275 GLPGFRVGAIYS---NDDMVVAAATKM-SSFGLVSSQTQYLLSALLSDKK--------FTQNYISENKKRLKQRHRKLVS 342 (469)
Q Consensus 275 g~~GlRiG~li~---~~~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~--------~~~~~~~~~~~~l~~~~~~l~~ 342 (469)
|++|+|+||+++ ++..+ +.+.+. ...++++.+.|.++..++.... + .++++..+++++++++++.+
T Consensus 321 g~~G~R~G~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~ 398 (500)
T 3tcm_A 321 GECGKRGGYFEITGFSAPVR-EQIYKIASVNLCSNITGQILASLVMNPPKASDESYASY-KAEKDGILASLARRAKALEH 398 (500)
T ss_dssp CCGGGCCEEEEEESCCTTHH-HHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccceEEEEEeCCCHHHH-HHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 899999999998 55444 434333 3345578899999999987532 3 56677788899999999999
Q ss_pred HHHhc-CCceecCCceEEEEEecc--ccc-c---cCChhHHHHHHHHHHHhCCeEEeCCCCCCC-CCCCeEEEEeecCCH
Q 043923 343 GLEKA-GISCLKSNAGLFCWVDMR--HLL-R---SNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFANMSE 414 (469)
Q Consensus 343 ~L~~~-g~~v~~~~~g~~~~v~~~--~~~-~---~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~~~~~iRi~~~~~~~ 414 (469)
.|+++ |+++.++++|+|+|+++. ... . ......+..++.++++++||.+.||+.|+. .+.+++|++++ .++
T Consensus 399 ~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~ 477 (500)
T 3tcm_A 399 AFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQE 477 (500)
T ss_dssp HHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCT
T ss_pred HHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCH
Confidence 99998 899999999999996543 210 0 001122334567788888999999999985 45679999999 699
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 043923 415 DTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 415 e~i~~~l~~L~~~l~~~~~ 433 (469)
+++++++++|++++++..+
T Consensus 478 e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 478 DKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=383.45 Aligned_cols=372 Identities=15% Similarity=0.154 Sum_probs=281.9
Q ss_pred ccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeecccc------ccChHHHHHHHhcCCCccccccCCcccc
Q 043923 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAEN------QLSFDLLESWLDRNPDAAGFKRDGQSIF 76 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (469)
|+|.+ .....-+.++++.-........ ..++|||++|+. +.+++.+.++.. .... -
T Consensus 1 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~------~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~----------~ 62 (405)
T 3k7y_A 1 MDKLL-SSLENIEVDNILKTAREFKEDT------CEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTE----------N 62 (405)
T ss_dssp CCCGG-GGCCCCCCCHHHHHHHHHTTSS------CSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHH----------H
T ss_pred Ccchh-hcCCCCCCChHHHHHHHHhcCC------CcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcC----------C
Confidence 45544 3444555566665544443332 247899999962 123466666643 2000 0
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc--EEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHH
Q 043923 77 RELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK--IVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDL 152 (469)
Q Consensus 77 ~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~--i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~ 152 (469)
.....|++..|.++||+++++++.+..+ ..+++++ |++|+|+++|+.+++.++.. + |+|++++|+|..|...+
T Consensus 63 ~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~ 139 (405)
T 3k7y_A 63 YKEKPYLLGNGTEDFSTLTQNLIFGNNS--KYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMI 139 (405)
T ss_dssp CCCCCCCTTSSCHHHHHHHHHHHHCSSC--TTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHcCCCC--ccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHH
Confidence 2356899999999999999999965543 2245664 59999999999999999987 8 99999999999999999
Q ss_pred hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q 043923 153 KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNIITEKNIHLISDE 231 (469)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~s~e~l~~l~~~~~~~~~~iI~De 231 (469)
+.. |++++.+|+..+++|.+|++++++++++. ++++++++++| |||||.+++.+++++|+++|++|+++||+||
T Consensus 140 ~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De 214 (405)
T 3k7y_A 140 ESR-GFNLKYINFFDYNLIDINYDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDI 214 (405)
T ss_dssp HTT-TCEEEEECCEETTTTEECHHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHc-CCeEEEEeccccccCCcCHHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEec
Confidence 887 99999999844457899999999998741 24577777665 8999999999999999999999999999999
Q ss_pred cccccccCCC--CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEe--cCHHHHHHH----HHh--ccc
Q 043923 232 IYSGTVFSSP--GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS--NDDMVVAAA----TKM--SSF 301 (469)
Q Consensus 232 ay~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~--~~~~~~~~~----~~~--~~~ 301 (469)
+|.++.+++. ...++..+.. ..+++++++||||+||++|+|+||+++ +++.+.+.+ ... ..+
T Consensus 215 ~Y~~l~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (405)
T 3k7y_A 215 AYQGFGHTNLEEDVLLIRKFEE--------KNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFY 286 (405)
T ss_dssp SCTTTSSSSTTGGGHHHHHHHT--------TTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CcccccCCCcccchHHHHHHHh--------cCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhccc
Confidence 9999876532 1223333332 347899999999999999999999864 344443322 222 223
Q ss_pred ccCcHHHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHH----hcC----CceecCCceEEEEEeccccccc
Q 043923 302 GLVSSQTQYLLSALLSDKKFT---QNYISENKKRLKQRHRKLVSGLE----KAG----ISCLKSNAGLFCWVDMRHLLRS 370 (469)
Q Consensus 302 ~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~----~~g----~~v~~~~~g~~~~v~~~~~~~~ 370 (469)
.+++.+.|.++..+|.+..+. .++++..+++++++|+.+.+.|+ ++| |++.++++|||+|+.++.
T Consensus 287 ~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~---- 362 (405)
T 3k7y_A 287 SSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA---- 362 (405)
T ss_dssp SSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----
T ss_pred CCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----
Confidence 345678999999999885321 45567778889999999999999 776 578899999999998763
Q ss_pred CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 371 ~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+++.+| +++||.+.||. |||++.++++++++++++|+++++.
T Consensus 363 -------~~~~~L-~~~gV~v~p~~----------Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 363 -------KIAEHL-KTHHIYIINNG----------RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp -------GGTTTT-TTTTEECCTTS----------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred -------HHHHHH-HHCCEeecCCC----------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 234556 78999999862 9999888999999999999998864
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-46 Score=373.63 Aligned_cols=352 Identities=16% Similarity=0.287 Sum_probs=288.7
Q ss_pred CCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCC-CCCC-
Q 043923 36 NPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVT-FDTS- 112 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~-~~~~- 112 (469)
...++|||+.|+++++ ++.+.+++.+. ......|++..|..+||+++++++.+.++ +. ++++
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 92 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTAS-------------LHELEKYPLTAGLPELRQACANWLKRRYD--GLTVDADN 92 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHT-------------GGGGGSCCCTTCCHHHHHHHHHHHHHHTT--TCCCCTTT
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHH-------------hhhccCCCCCCCcHHHHHHHHHHHHHhcC--CCCCCCCC
Confidence 3457899999999886 56777777764 23467899888999999999999988876 33 5688
Q ss_pred cEEEeCChHHHHHHHHHHhcCCC-----CEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 113 KIVLTAGATSANETLMFCLAEPG-----EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~g-----d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
+|++|+|+++++..++.+++++| |.|+++.|+|..+...+... |++++.+|++ +++|.+|++++++++++
T Consensus 93 ~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~g~~~d~~~l~~~~~~--- 167 (396)
T 3jtx_A 93 EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLG-GGEIHFANCP-APSFNPDWRSISEEVWK--- 167 (396)
T ss_dssp SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHT-TCEEEEEECC-TTTCCCCGGGSCHHHHH---
T ss_pred eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHc-CCEEEEeecC-CCCCccCHHHHHHhhcc---
Confidence 99999999999999999999997 79999999999999888877 9999999984 46788999999999876
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i 267 (469)
++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++....+.......+. ...++++++
T Consensus 168 ---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~ 240 (396)
T 3jtx_A 168 ---RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLG----RSRQKLLMF 240 (396)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTT----CCCTTEEEE
T ss_pred ---CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcc----cccCcEEEE
Confidence 8999999999999999999999999999999999999999999987776633344433221000 024789999
Q ss_pred ccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 268 YSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 268 ~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
+|+||+||++|+|+||++++++ +.+.+..... .++++++.|.++.+++.+.. ++++.+++++++++.+.+.|+
T Consensus 241 ~s~sK~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~ 315 (396)
T 3jtx_A 241 TSLSKRSNVPGLRSGFVAGDAE-LLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQ----HVIDNRRLYQEKFERVIPILQ 315 (396)
T ss_dssp EESTTTSSCGGGCCEEEEECHH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHT
T ss_pred eccccccCCcccceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998544 4444443322 24578899999999887643 478888999999999999998
Q ss_pred hcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC------CCCCeEEEEeecCCHHHHHH
Q 043923 346 KAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANMSEDTLKL 419 (469)
Q Consensus 346 ~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~------~~~~~iRi~~~~~~~e~i~~ 419 (469)
+. +.+..+.+|+|+|++++. .+..+++..+++++||.+.||+.|+. ..++++||+++. +++++++
T Consensus 316 ~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~ 386 (396)
T 3jtx_A 316 QV-FDVKLPDASFYIWLKVPD-------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVK 386 (396)
T ss_dssp TT-SCCCCCSSSSEEEEECTT-------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHH
T ss_pred hc-CCccCCCeeEEEEEECCC-------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHH
Confidence 76 566778889999999985 12346778887888999999999875 346899999986 9999999
Q ss_pred HHHHHHHHH
Q 043923 420 SMQRLKAFV 428 (469)
Q Consensus 420 ~l~~L~~~l 428 (469)
++++|++++
T Consensus 387 ~l~~l~~~l 395 (396)
T 3jtx_A 387 AAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=385.35 Aligned_cols=359 Identities=19% Similarity=0.306 Sum_probs=290.4
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|||+.|.+.++ ++.+.+++.+.... .....|++..|..+|++++|+++.+.++ .++++++|+
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~v~ 122 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI-----------PMVNQYSPTRGRPSLINSLIKLYSPIYN--TELKAENVT 122 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS-----------GGGGSCCCTTCCHHHHHHHHHHHTTTTT--SCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 457899999988764 56677777664211 1245799888999999999999987766 346778999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCC----------CcccCHHHHHHHHHHH
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLN----------GFQITETAIEEAYQLA 185 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~----------~~~~d~~~l~~~i~~~ 185 (469)
+|+|+++|+..++.+++++||.|+++.|+|..+...+... |.+++.+|++.++ +|.+|++++++++++
T Consensus 123 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~- 200 (447)
T 3b46_A 123 VTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELC-GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS- 200 (447)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-
Confidence 9999999999999999999999999999999999988877 9999999987542 678999999988753
Q ss_pred HhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEE
Q 043923 186 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i 265 (469)
++++|++++|+||||.++|.+++++|+++|++||++||+||+|.++.|++ .+.++..+.++ ..++++
T Consensus 201 -----~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-------~~~~~i 267 (447)
T 3b46_A 201 -----KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPE-------IGQLTL 267 (447)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHH-------HHTTEE
T ss_pred -----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCC-------CCCcEE
Confidence 78999999999999999999999999999999999999999999887765 33454444110 237899
Q ss_pred EEccCccccCCCcceEEEEEe-cCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHH
Q 043923 266 IVYSLSKDLGLPGFRVGAIYS-NDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVS 342 (469)
Q Consensus 266 ~i~S~SK~~g~~GlRiG~li~-~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 342 (469)
+++|+||+||++|+|+||+++ ++. +.+.+.... ..++.+++.|.++.++|+.... .+++++.++.++++++++.+
T Consensus 268 ~i~S~sK~~~~~G~riG~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~l~~ 345 (447)
T 3b46_A 268 TVGSAGKSFAATGWRIGWVLSLNAE-LLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKIFTS 345 (447)
T ss_dssp EEEEHHHHTTCTTSCCEEEECSCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHH
T ss_pred EEecCchhcCCcchhhEEEEeCCHH-HHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 554 444443322 2344788899998888876433 55688889999999999999
Q ss_pred HHHhcCCceecCCceEEEEEecccccccCC---------hhHHHHHHHHHHHhCCeEEeCCCCCCCC-----CCCeEEEE
Q 043923 343 GLEKAGISCLKSNAGLFCWVDMRHLLRSNT---------FEAEMELWKKIVYDVKLNISPGSSCHCT-----EPGWFRVC 408 (469)
Q Consensus 343 ~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~---------~~~~~~l~~~ll~~~GI~v~pg~~f~~~-----~~~~iRi~ 408 (469)
.|+++|+++..+.+|+|+|++++....... ..+..+++.++++++||.+.||+.|+.. .++++||+
T Consensus 346 ~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls 425 (447)
T 3b46_A 346 IFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFA 425 (447)
T ss_dssp HHHHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEE
T ss_pred HHHHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEE
Confidence 999999999888999999999975210000 1234567888887889999999988753 26799999
Q ss_pred eecCCHHHHHHHHHHHHH
Q 043923 409 FANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 409 ~~~~~~e~i~~~l~~L~~ 426 (469)
++. +++++++++++|++
T Consensus 426 ~~~-~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 426 VCK-DDAYLENAVERLKL 442 (447)
T ss_dssp CCS-CHHHHHHHHHHGGG
T ss_pred EeC-CHHHHHHHHHHHHH
Confidence 985 89999999999987
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=376.20 Aligned_cols=361 Identities=18% Similarity=0.287 Sum_probs=290.5
Q ss_pred CCeeeeecccccc---ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 38 TGIIQMGLAENQL---SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
+++|+|+.|.+.. |++.+.+++.+.... .......|++..|..+||+++|+++.+.++ ++ ++++|
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~---------~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~-~~~~v 143 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEK---------YADKALQYGTTKGFTPLRETLMKWLGKRYG--IS-QDNDI 143 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHH---------SHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CC-TTSEE
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHh---------hhHHHhCCCCCCCcHHHHHHHHHHHHHhcC--cC-ChhhE
Confidence 3689999886543 556666666552100 001245798888999999999999977666 33 78999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+|++.+ .+|+++|+++++.....+.++++
T Consensus 144 ~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~ 219 (448)
T 3aow_A 144 MITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFY-EPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKV 219 (448)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEE
T ss_pred EEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeE
Confidence 99999999999999999999999999999999999988877 999999998753 38999999988621111237888
Q ss_pred E-EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 195 V-LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 195 v-vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
| ++++|+||||.++|.+++++|+++|++||++||+||+|.++.|++....++..+. ..+++++++||||+
T Consensus 220 v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~---------~~~~vi~~~S~SK~ 290 (448)
T 3aow_A 220 VYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD---------NEGRVIYLGTFSKI 290 (448)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGC---------TTSCEEEEEESTTT
T ss_pred EEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcC---------CCCCEEEEccchhh
Confidence 7 5789999999999999999999999999999999999999877665555655551 34689999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---C
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA---G 348 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---g 348 (469)
|| +|+|+||++++++ +.+.+..... .++++.+.|.++.++|++..+ .+++++.++.++++++++.+.|++. |
T Consensus 291 ~~-~GlriG~v~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~g 367 (448)
T 3aow_A 291 LA-PGFRIGWMVGDPG-IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPEG 367 (448)
T ss_dssp TC-GGGCCEEEEECHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred cc-ccccEEEEEeCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99 9999999999644 4444433322 234688999999999987655 7788999999999999999999985 7
Q ss_pred CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 349 ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 349 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
+++..+.+|+|+|++++... +..+++..++++ ||.+.||..|+.. .++++||+++..+++++++++++|++
T Consensus 368 ~~~~~p~~g~~~~v~~~~~~------~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~ 440 (448)
T 3aow_A 368 VKWTKPEGGMFIWVTLPDGI------DSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAE 440 (448)
T ss_dssp CEECCCSBSSEEEEECSTTC------CHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHH
T ss_pred eEEeCCCccEEEEEEcCCCC------CHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 88888888999999997532 234677777765 9999999988753 46799999986689999999999999
Q ss_pred HHHhhcc
Q 043923 427 FVDSITT 433 (469)
Q Consensus 427 ~l~~~~~ 433 (469)
++++..+
T Consensus 441 ~l~~~~~ 447 (448)
T 3aow_A 441 TIKEELK 447 (448)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9987644
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=377.49 Aligned_cols=361 Identities=19% Similarity=0.288 Sum_probs=288.8
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i 114 (469)
..++|||+.|.++++ ++.+.+++.+.... .....|++..|..+|++++|+++.+.++ +++++ ++|
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~ia~~~~~~~g--~~~~~~~~v 102 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQR-----------EDTHGYSTSRGIPRLRRAISHWYRDRYD--VQIDPESEA 102 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC--------------------CTTCCHHHHHHHHHHHHHHHC--CCCCTTTSE
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCcCE
Confidence 346899999998874 56777777664221 1245688778999999999999987766 33567 799
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++|+..++.+++++||.|+++.|+|..+...+... |++++.+|.+.+++|.+|++++++++++ ++++
T Consensus 103 ~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~ 175 (412)
T 2x5d_A 103 IVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIA-GAQVRSVPLVPGIDFFNELERAIRESIP------KPRM 175 (412)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHH-TCEEEEEECSTTSCHHHHHHHHHHTEES------CCSE
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHhccc------CceE
Confidence 99999999999999999999999999999999999988887 9999999988654677888888887653 7889
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..+.. ..+++++++|+||+|
T Consensus 176 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~~~~i~~~s~sK~~ 247 (412)
T 2x5d_A 176 MILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPG--------AKDIAVEFFTLSKSY 247 (412)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------GGGTEEEEEECC-CC
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccC--------ccCcEEEEecCcccc
Confidence 999999999999999999999999999999999999999987775544455554421 246899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|++|+|+||+++++ .+.+.+..... .++++++.|.++.++|... .+++++.++.++++++++.+.|+++|+++.
T Consensus 248 ~~~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 323 (412)
T 2x5d_A 248 NMAGWRIGFMVGNP-ELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIARQYQQRRDVLVKGLREAGWMVE 323 (412)
T ss_dssp SCTTSCCEEEEECH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcccceEEEEcCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCEec
Confidence 99999999999954 44444443332 2457889999998888764 245788888999999999999998899888
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
++.+|+|+|++++..... .+..+++..+++++||.+.||..|+...++++||+++. +++++++++++|++++++..
T Consensus 324 ~~~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 324 NPKASMYVWAKIPEPYAH---LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp CCSBSSEEEEECCTTTGG---GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeeeEEEEEcCCccCC---CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhcC
Confidence 888899999999743210 12346777877777999999998875557899999996 99999999999999998754
Q ss_pred c
Q 043923 433 T 433 (469)
Q Consensus 433 ~ 433 (469)
+
T Consensus 400 ~ 400 (412)
T 2x5d_A 400 L 400 (412)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=376.15 Aligned_cols=353 Identities=20% Similarity=0.313 Sum_probs=289.8
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i~ 115 (469)
.++|||+.|.++++ ++.+.+++.+.... .....|++..|..+|++++|+++.+.++ +++++ ++|+
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~v~ 113 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTI-----------PENQKYGAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVC 113 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTC-----------HHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 45899999999875 46677776653211 1245788878899999999999987766 33555 7999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+|.+. ++|.+|++++++++++ ++++|
T Consensus 114 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 185 (404)
T 2o1b_A 114 ILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLA-DGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLI 185 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHT-TCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEE
Confidence 9999999999999999999999999999999999988877 99999999875 5678899999998865 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++ ...++..+.. ..+++++++|+||+||
T Consensus 186 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~--------~~~~~i~~~s~sK~~g 256 (404)
T 2o1b_A 186 YLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASEN--------GKDVAIEIYSLSKGYN 256 (404)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTT--------HHHHEEEEEESTTTTT
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCC--------CCCCEEEEEecchhcc
Confidence 999999999999999999999999999999999999999876654 2344444421 2367899999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
++|+|+||++++++ +.+.+..... .++++.+.|.++.++|+.. .+++++.+++++++++++.+.|+++|+++.+
T Consensus 257 ~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 332 (404)
T 2o1b_A 257 MSGFRVGFAVGNKD-MIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKADLPFVH 332 (404)
T ss_dssp CGGGCCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred CchhheEeEecCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCeecC
Confidence 99999999999544 4444443322 2357889999988888763 4568888999999999999999998999888
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.+|+|+|++++... +..++++.+++++||.+.||..|+...++++||+++. +++++++++++|++++++.
T Consensus 333 ~~~g~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 333 AKGGIYVWLETPPGY------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp CCBSSEEEEECCTTC------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGGG
T ss_pred CCcceEEEEeCCCCC------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHhh
Confidence 889999999997421 2335777877677999999998875457899999996 8899999999999988754
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=371.29 Aligned_cols=358 Identities=18% Similarity=0.376 Sum_probs=292.2
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc-EE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK-IV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~-i~ 115 (469)
.++|+|+.++++++ ++.+.+++.+... .....|++..|..+|++++|+++.+.++ +.+++++ |+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~ 91 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNG--IEADPKTEIM 91 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 47899999998864 4566666655311 1134688878899999999999987766 3357889 99
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|+++.|+|+++...+... |++++.+|.+.+++|.+|++++++++++ ++++|
T Consensus 92 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (389)
T 1gd9_A 92 VLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRAL 164 (389)
T ss_dssp EESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCCccCCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999988887 9999999987545688999999998864 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++....++..+.. ..+++++++|+||+||
T Consensus 165 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~s~sK~~~ 236 (389)
T 1gd9_A 165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG--------MFERTITVNGFSKTFA 236 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT--------CGGGEEEEEESTTTTT
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC--------CCCCEEEEecChhhcC
Confidence 99999999999999999999999999999999999999987766543345544421 2468999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
++|+|+||+++++ .+.+.+..... .++++++.|.++.++|+.... .+++++.+++++++++++.+.|+++|+++.+
T Consensus 237 ~~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 314 (389)
T 1gd9_A 237 MTGWRLGFVAAPS-WIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVK 314 (389)
T ss_dssp CGGGCCEEEECCH-HHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CcccceEEEEECH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHcCCeecC
Confidence 9999999999964 44444443332 245788999999999987432 3368888999999999999999998998888
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+.+|+|+|++++... .+..++++.+++++||.+.||..|+..+++++||+++. +++++++++++|++++++.+
T Consensus 315 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 315 PKGAFYIFPRIRDTG-----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKERK 387 (389)
T ss_dssp CCBTTEECCBCGGGT-----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCeeeEEEEeccCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhcc
Confidence 888999999987410 12335777777678999999998875557899999996 99999999999999997654
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-46 Score=373.58 Aligned_cols=357 Identities=21% Similarity=0.360 Sum_probs=282.1
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|||+.|+++++ ++.+.+++.+... .....|++..|..+||+++|+++++.++ +++++++|+
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~v~ 95 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLE------------TDALGYTVALGLPALRQRIARLYGEWYG--VDLDPGRVV 95 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC----------------------CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999999986 4556666665311 1235788888899999999999998877 446889999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+..++.+++++||+|+++.|+|..+...+... |++++.+|++.+++|.+|+++++++ ++++|
T Consensus 96 ~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v 165 (391)
T 3h14_A 96 ITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRAL-GLVPVDLPTAPENRLQPVPADFAGL---------DLAGL 165 (391)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECCGGGTTSCCHHHHTTS---------CCSEE
T ss_pred EecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHhc---------CCeEE
Confidence 9999999999999999999999999999999999888887 9999999998777788999888764 67899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++.. .+...+ .+++++++|+||.+|
T Consensus 166 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~-----------~~~~i~~~s~sK~~g 233 (391)
T 3h14_A 166 MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA-VTALEL-----------TDECYVINSFSKYFS 233 (391)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CCGGGT-----------CSSSEEEEESSSTTC
T ss_pred EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC-cChhhc-----------CCCEEEEEechhccC
Confidence 99999999999999999999999999999999999999987776542 333322 368899999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce-e
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC-L 352 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v-~ 352 (469)
++|+|+||++++++.+ +.+..... .++++.+.|.++.+++.. .+++++.+++++++++.+.+.|+++++.. .
T Consensus 234 ~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 308 (391)
T 3h14_A 234 MTGWRVGWMVVPEDQV-RVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFTRIA 308 (391)
T ss_dssp CTTSCCEEEECCGGGH-HHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBC
T ss_pred CccceeEEEEeCHHHH-HHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999999966544 33333322 234778899888888873 45688889999999999999999987654 5
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
++.+++|+|++++... .+..+++..+++++||.+.||+.|+. ..++++|++++. +++++++++++|++++++.
T Consensus 309 ~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 309 PPDGAFYVYADVSDLT-----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp CCCBTTEEEEECTTTC-----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHHC
T ss_pred CCCeeEEEEEecCccC-----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 7788899999987421 12346778888777999999999986 457899999996 8999999999999999977
Q ss_pred cccccccccc
Q 043923 432 TTTLHNQSNH 441 (469)
Q Consensus 432 ~~~~~~~~~~ 441 (469)
.++. ..|||
T Consensus 383 ~~~~-~~~~~ 391 (391)
T 3h14_A 383 GEGH-HHHHH 391 (391)
T ss_dssp ----------
T ss_pred cccc-cccCC
Confidence 7743 34444
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=378.46 Aligned_cols=363 Identities=18% Similarity=0.338 Sum_probs=295.9
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i~ 115 (469)
.++|+|+.|.+.++ ++.+.+++.+.... ......|++..|..++|+++++++++.++ +++++ ++|+
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~----------~~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~~i~ 95 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSG----------DFMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVL 95 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHS----------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEE
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhC----------CCccCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCcEE
Confidence 37899999998875 56677766653110 01246799888999999999999998877 34567 7999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC----------CCCcccCHHHHHHHHHHH
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS----------LNGFQITETAIEEAYQLA 185 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~d~~~l~~~i~~~ 185 (469)
+|+|+++++..++.+++++||.|+++.|+|..+...+... |.+++.+|++. ..+|.+|++++++++++
T Consensus 96 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~- 173 (422)
T 3fvs_A 96 VTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS- 173 (422)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT-
T ss_pred EECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHc-CCEEEEEecccccccccccccccCCCCCHHHHHhhcCC-
Confidence 9999999999999999999999999999999999888887 99999999875 23678999999988764
Q ss_pred HhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEE
Q 043923 186 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i 265 (469)
++++|++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..+.. ..++++
T Consensus 174 -----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--------~~~~~i 240 (422)
T 3fvs_A 174 -----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG--------MWERTL 240 (422)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------TGGGEE
T ss_pred -----CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc--------ccCcEE
Confidence 7899999999999999999999999999999999999999999998777765556655532 347899
Q ss_pred EEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcC-----chhhHHHHHHHHHHHHHHHH
Q 043923 266 IVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSD-----KKFTQNYISENKKRLKQRHR 338 (469)
Q Consensus 266 ~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~l~~~~~ 338 (469)
+++|+||+||++|+|+||++++++.+ +.+.... ..++++++.|.++.+++.+ ..+ .+++++.+++++++++
T Consensus 241 ~~~S~sK~~g~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (422)
T 3fvs_A 241 TIGSAGKTFSATGWKVGWVLGPDHIM-KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP-SSYFVQFPQAMQRCRD 318 (422)
T ss_dssp EEEEHHHHHTCGGGCCEEEECCHHHH-HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT-TCHHHHHHHHHHHHHH
T ss_pred EEecchhccCCccceEEEEEeCHHHH-HHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999965544 4343332 2345788999998888864 122 4567888999999999
Q ss_pred HHHHHHHhcCCceecCCceEEEEEecccccccC-------ChhHHHHHHHHHHHhCCeEEeCCCCCCC-----CCCCeEE
Q 043923 339 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSN-------TFEAEMELWKKIVYDVKLNISPGSSCHC-----TEPGWFR 406 (469)
Q Consensus 339 ~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~-------~~~~~~~l~~~ll~~~GI~v~pg~~f~~-----~~~~~iR 406 (469)
++.+.|+++|+++..+.+|+|+|++++...... ......+++..+++++||.+.||+.|+. .+.+++|
T Consensus 319 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iR 398 (422)
T 3fvs_A 319 HMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIR 398 (422)
T ss_dssp HHHHHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEE
T ss_pred HHHHHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEE
Confidence 999999999999888999999999987521100 0011346788888888999999998864 3578999
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHh
Q 043923 407 VCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 407 i~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++++. +++++++++++|++++++
T Consensus 399 is~~~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 399 FCFVK-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EECCC-CHHHHHHHHHHHHHHHHC
T ss_pred EEecC-CHHHHHHHHHHHHHHHhh
Confidence 99996 999999999999999864
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=376.45 Aligned_cols=360 Identities=18% Similarity=0.305 Sum_probs=294.2
Q ss_pred CCeeeeeccccc-----cChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 38 TGIIQMGLAENQ-----LSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 38 ~~~i~L~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
.++|+|+.|.+. .+++.+.+++.+.... .....|++..|+.+||+++|+++++. + .+++++
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~-~--~~~~~~ 119 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDS-----------GKYNGYAPSIGFLSSREEIASYYHCP-E--APLEAK 119 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHH-----------CCSSSCCCTTCCHHHHHHHHHHHCBT-T--BCCCGG
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhc-----------CcCCCCCCCCCcHHHHHHHHHHHhhc-C--CCCChH
Confidence 468999999753 2456677776653110 12457988889999999999999754 3 446789
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|++|+|+++|+..++.+++++||+|+++.|+|..+...+... |++++.+|++++++|.+|++.+++++++ ++
T Consensus 120 ~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~ 192 (427)
T 3dyd_A 120 DVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESM-GIEVKLYNLLPEKSWEIDLKQLEYLIDE------KT 192 (427)
T ss_dssp GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHSSCCT------TE
T ss_pred HEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhcc------CC
Confidence 9999999999999999999999999999999999999888887 9999999997767888999999988764 78
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..+. ...++++++|+||
T Consensus 193 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~---------~~~~vi~~~S~sK 263 (427)
T 3dyd_A 193 ACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS---------TDVPILSCGGLAK 263 (427)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC---------SSCCEEEEEESTT
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC---------CCCcEEEEeeccc
Confidence 9999999999999999999999999999999999999999999877766555555542 2356899999999
Q ss_pred ccCCCcceEEEEEecC------HHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 273 DLGLPGFRVGAIYSND------DMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~------~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
.|+++|+|+||+++++ +.+.+.+.... ..++++++.|.++.++|.+.. .+++++.+++++++++.+.+.|+
T Consensus 264 ~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~~~L~ 341 (427)
T 3dyd_A 264 RWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGALA 341 (427)
T ss_dssp TSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999875 34554444332 345588899999999987432 45678888999999999999999
Q ss_pred hc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 043923 346 KA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424 (469)
Q Consensus 346 ~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L 424 (469)
++ |+++..+.+|+|+|+.++...... ..+..+++.++++++||.+.||..|+. ++++||+++ .+++++++++++|
T Consensus 342 ~~~g~~~~~p~~g~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l~~l 417 (427)
T 3dyd_A 342 AIPGLRPVRPSGAMYLMVGIEMEHFPE-FENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACSRI 417 (427)
T ss_dssp HSTTEEEECCSBTTEEEEEECGGGCTT-CSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESC-SCHHHHHHHHHHH
T ss_pred cCCCceecCCCeeEEEEEecCHhhcCC-CCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEEC-CCHHHHHHHHHHH
Confidence 98 888888889999999887321110 122346788888788999999998864 689999998 5999999999999
Q ss_pred HHHHHhhcc
Q 043923 425 KAFVDSITT 433 (469)
Q Consensus 425 ~~~l~~~~~ 433 (469)
++++++.++
T Consensus 418 ~~~l~~~~~ 426 (427)
T 3dyd_A 418 QEFCEQHYH 426 (427)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhc
Confidence 999987653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-46 Score=374.96 Aligned_cols=358 Identities=20% Similarity=0.336 Sum_probs=292.3
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i~ 115 (469)
.++|+|+.|.+.++ ++.+.+++.+.... .....|++..|..+|++++|+++++.++ +.+++ ++|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~la~~~~~~~~--~~~~~~~~i~ 89 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFI-----------DNMNQYTRGFGHPALVKALSCLYGKIYQ--RQIDPNEEIL 89 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTC-----------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------ccccCCCCCCChHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 47899999998875 56677776653111 1356799888899999999999998877 44667 8999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC---------CCCcccCHHHHHHHHHHHH
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS---------LNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~---------~~~~~~d~~~l~~~i~~~~ 186 (469)
+|+|+++++..++.+++++||.|+++.|+|..+...+... |.+++.++++. ..+|.+|++++++++++
T Consensus 90 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-- 166 (410)
T 3e2y_A 90 VAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMA-GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-- 166 (410)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT--
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEeccccccccccccccCCcCCHHHHHhhcCC--
Confidence 9999999999999999999999999999999999988887 99999999862 24677899999988754
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++..+.++..+.. ..+++++
T Consensus 167 ----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--------~~~~~i~ 234 (410)
T 3e2y_A 167 ----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPG--------MWERTIT 234 (410)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------CGGGEEE
T ss_pred ----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCC--------ccCeEEE
Confidence 7999999999999999999999999999999999999999999988777665556655532 4478999
Q ss_pred EccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcC-----chhhHHHHHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSD-----KKFTQNYISENKKRLKQRHRK 339 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~l~~~~~~ 339 (469)
++|+||+||++|+|+||++++++.+ +.+.... ..++++++.|.++.++|.+ ..+ .+++++.++.+++++++
T Consensus 235 ~~S~sK~~g~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 312 (410)
T 3e2y_A 235 IGSAGKTFSVTGWKLGWSIGPAHLI-KHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP-ECYFNSLPKELEVKRDR 312 (410)
T ss_dssp EEEHHHHSSCGGGCCEEEECCHHHH-HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHH
T ss_pred EecchhhcCCCCceEEEEEECHHHH-HHHHHHHHhhccCCChHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999965544 4343332 2345788999998888863 112 45578889999999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecccccccC-----ChhHHHHHHHHHHHhCCeEEeCCCCCCCC-----CCCeEEEEe
Q 043923 340 LVSGLEKAGISCLKSNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYDVKLNISPGSSCHCT-----EPGWFRVCF 409 (469)
Q Consensus 340 l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~-----~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-----~~~~iRi~~ 409 (469)
+.+.|+++|+++..+.+|+|+|++++...... ....+.+++..+++++||.+.||+.|+.. +.+++||++
T Consensus 313 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~ 392 (410)
T 3e2y_A 313 MVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCF 392 (410)
T ss_dssp HHHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEEC
T ss_pred HHHHHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEE
Confidence 99999999999999999999999987532211 01123467788888889999999988653 358999999
Q ss_pred ecCCHHHHHHHHHHHHH
Q 043923 410 ANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 410 ~~~~~e~i~~~l~~L~~ 426 (469)
+. +++++++++++|++
T Consensus 393 ~~-~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 393 IK-KDSTLDAAEEIFRA 408 (410)
T ss_dssp CC-CHHHHHHHHHHHHT
T ss_pred cC-CHHHHHHHHHHHHh
Confidence 85 99999999999975
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=379.97 Aligned_cols=350 Identities=19% Similarity=0.279 Sum_probs=276.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC----EEEEccCCCcChHHHHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGE----AFLLPTPYYPGFDRDLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd----~Vl~~~P~y~~~~~~~~~ 154 (469)
...|++..|.++||+++|+++.++++ ++++++++|++|+|+++++..++.+++++|| .|+++.|+|+.|...+..
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~g-G~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~ 200 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDG-GVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISE 200 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTT-TCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHH
Confidence 45799999999999999999988763 2456899999999999999999999999875 999999999999999888
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |++++.++++++++|.+|+++|++++++... ..++++|+++||+||||.++|.+++++|+++|++||++||+||+|.
T Consensus 201 ~-g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~ 278 (498)
T 3ihj_A 201 L-DAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ 278 (498)
T ss_dssp T-TCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred c-CCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc
Confidence 7 9999999999888899999999999986321 1258999999999999999999999999999999999999999999
Q ss_pred ccccCCC-CccchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEe--cCHHHHHHHHHhc-ccccCcHHHH
Q 043923 235 GTVFSSP-GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYS--NDDMVVAAATKMS-SFGLVSSQTQ 309 (469)
Q Consensus 235 ~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~--~~~~~~~~~~~~~-~~~~~s~~~q 309 (469)
++.|++. .+.++..+..+++.. .+...++++++||||+| |++|+|+||++. .++.+.+.+.+.. ...+++.+.|
T Consensus 279 ~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q 357 (498)
T 3ihj_A 279 DNVYSPDCRFHSFKKVLYEMGPE-YSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQ 357 (498)
T ss_dssp TCBCCTTCCCCCHHHHHHHTCHH-HHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred ccccCCCCCcCCHHHHHHHhccc-ccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHH
Confidence 9888754 566776664421000 00113588999999999 899999999984 3555555554433 3445788999
Q ss_pred HHHHHHhcC-----chh--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecccccc------cCChhH
Q 043923 310 YLLSALLSD-----KKF--TQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLR------SNTFEA 375 (469)
Q Consensus 310 ~~~~~~l~~-----~~~--~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~------~~~~~~ 375 (469)
.++..++.. +.+ ..++.+..++.++++++++.+.|+++ |+++.++++|+|+|++++.... ......
T Consensus 358 ~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~ 437 (498)
T 3ihj_A 358 AAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAP 437 (498)
T ss_dssp HHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCH
T ss_pred HHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCc
Confidence 999999875 122 12334667788999999999999998 8999999999999987642110 001122
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCC-CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 376 EMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 376 ~~~l~~~ll~~~GI~v~pg~~f~~-~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+..++.++++++||.+.||+.|+. .+.+++|++++ .+++++++++++|+++++++.+
T Consensus 438 ~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 438 DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL-PPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 323367788888999999999985 45679999997 6999999999999999988776
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=374.28 Aligned_cols=329 Identities=17% Similarity=0.275 Sum_probs=266.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC-------CCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFD-------TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD 151 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~-------~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~ 151 (469)
...|++..|+++||+++++++.+.++. ..+ +++|++|+|+++++..++.+++++||.|+++.|+|..+...
T Consensus 71 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 71 ALQYSPSAGIPELLSWLKQLQIKLHNP--PTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp HTSCCCTTCCHHHHHHHHHHHHHHHCC--TTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCC--CCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH
Confidence 457999999999999999999888773 232 37999999999999999999999999999999999999998
Q ss_pred HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH------hcCCceeEEEE-ecCCCCCCCCCCHHHHHHHHHHHHhcC
Q 043923 152 LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ------KRHLKVKGVLV-TNPSNPLGTTMSRNELNLLVNIITEKN 224 (469)
Q Consensus 152 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~------~~~~~~~~vvl-~~P~NPtG~~~s~e~l~~l~~~~~~~~ 224 (469)
+... |++++.+|++.+ .+|++++++++++.. ...+++++|++ ++||||||.++|.+++++|+++|++||
T Consensus 149 ~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~ 224 (425)
T 2r2n_A 149 LHPL-GCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYD 224 (425)
T ss_dssp HGGG-TCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHc-CCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcC
Confidence 8887 999999998742 379999999886210 00125788765 689999999999999999999999999
Q ss_pred eEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccc
Q 043923 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFG 302 (469)
Q Consensus 225 ~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~ 302 (469)
++||+||+|+++.|++....++..+. ..+++++++||||+|| +|+|+||+++++. +.+.+.... ..+
T Consensus 225 ~~li~De~~~~~~~~g~~~~~~~~~~---------~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~-l~~~l~~~~~~~~~ 293 (425)
T 2r2n_A 225 FLIIEDDPYYFLQFNKFRVPTFLSMD---------VDGRVIRADSFSKIIS-SGLRIGFLTGPKP-LIERVILHIQVSTL 293 (425)
T ss_dssp CEEEEECTTGGGBSSSSCCCCTGGGC---------TTSCEEEEEESTTTTC-STTCCEEEEEEHH-HHHHHHHHHHTTTC
T ss_pred CEEEEECCcccccCCCCCCCCccccC---------CCCCEEEEccchhhcc-CccceEEEecCHH-HHHHHHHHHHHhcC
Confidence 99999999998878765555665551 3468999999999998 9999999999655 444443332 224
Q ss_pred cCcHHHHHHHHHHhcC---chhhHHHHHHHHHHHHHHHHHHHHHHHhc--CC-ceecCCceEEEEEecccccccCChhHH
Q 043923 303 LVSSQTQYLLSALLSD---KKFTQNYISENKKRLKQRHRKLVSGLEKA--GI-SCLKSNAGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~-~v~~~~~g~~~~v~~~~~~~~~~~~~~ 376 (469)
+++.+.|.++.++|++ +.+ .+++++.++.++++++.+.+.|++. ++ .+..+.+|+|+|++++...+.
T Consensus 294 ~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~------ 366 (425)
T 2r2n_A 294 HPSTFNQLMISQLLHEWGEEGF-MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDV------ 366 (425)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCC------
T ss_pred CCCHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCH------
Confidence 5788999999999876 333 6778889999999999999999985 66 466788999999999753221
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~---~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+++.+.+.++||.+.||..|+.. ..+++||+++..+++++++++++|++++++.
T Consensus 367 ~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 367 KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 233344556789999999998753 3579999998559999999999999998753
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=371.56 Aligned_cols=364 Identities=19% Similarity=0.288 Sum_probs=291.4
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~ 115 (469)
.++|+|+.+.+.++ ++.+.+++.+..... ......|++..|..+|++++|+++.+.++ ++++++ +|+
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~ 105 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSP---------DPLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVL 105 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCS---------CGGGGSCCCSSCCHHHHHHHHHHHHHHHT--SCCCTTTSEE
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcc---------ccCccCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcCCEE
Confidence 46899999988764 466666666531110 01345788888899999999999988766 345788 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCC--------CcccCHHHHHHHHHHHHh
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLN--------GFQITETAIEEAYQLAQK 187 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~l~~~i~~~~~ 187 (469)
+|+|+++|+..++.+++++||.|+++.|+|..+...+... |.+++.+|++.+. +|.+|++++++++++
T Consensus 106 ~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 181 (429)
T 1yiz_A 106 VTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE--- 181 (429)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT---
T ss_pred EecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCcccccccccccCcccCHHHHHHHhcc---
Confidence 9999999999999999999999999999999999888877 9999999987543 578999999988753
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i 267 (469)
++++|++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..+.. ..++++++
T Consensus 182 ---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~ 250 (429)
T 1yiz_A 182 ---KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG--------MWERTITI 250 (429)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTT--------TGGGEEEE
T ss_pred ---CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccC--------CcCceEEE
Confidence 7899999999999999999999999999999999999999999988776654445544411 34689999
Q ss_pred ccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcC-----chhhHHHHHHHHHHHHHHHHHH
Q 043923 268 YSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSD-----KKFTQNYISENKKRLKQRHRKL 340 (469)
Q Consensus 268 ~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~l~~~~~~l 340 (469)
.|+||.||++|+|+||+++++. +.+.+.... ..++.+++.|.++.++|+. ..+ .+++++.++.++++++.+
T Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 328 (429)
T 1yiz_A 251 GSAGKTFSLTGWKIGWAYGPEA-LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYM 328 (429)
T ss_dssp EEHHHHHTCGGGCCEEEESCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHH
T ss_pred ecchhccCCCCcceEEEEeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999654 444443332 2345788889888888876 433 456788899999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecccccc------cCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-----CCCeEEEEe
Q 043923 341 VSGLEKAGISCLKSNAGLFCWVDMRHLLR------SNTFEAEMELWKKIVYDVKLNISPGSSCHCT-----EPGWFRVCF 409 (469)
Q Consensus 341 ~~~L~~~g~~v~~~~~g~~~~v~~~~~~~------~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-----~~~~iRi~~ 409 (469)
.+.|+++|+++..+.+|+|+|++++.... .....+..+++.++++++||.+.||..|+.. .++++||++
T Consensus 329 ~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~ 408 (429)
T 1yiz_A 329 ASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF 408 (429)
T ss_dssp HHHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEEC
T ss_pred HHHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEe
Confidence 99999889998888889999999975310 0000234467777877789999999888642 267999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHh
Q 043923 410 ANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 410 ~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+. +++++++++++|++++++
T Consensus 409 ~~-~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 409 FK-KDENLQKAAEILRKWKGS 428 (429)
T ss_dssp CS-CHHHHHHHHHHHHHHSCC
T ss_pred cC-CHHHHHHHHHHHHHhccC
Confidence 95 999999999999988653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=364.88 Aligned_cols=349 Identities=19% Similarity=0.249 Sum_probs=291.7
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|||+.|+++++ ++.+.+++.+... .....|++ .+ .++|+++|+++++.++ +.+++++|+
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~-~~-~~lr~~la~~~~~~~~--~~~~~~~i~ 85 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQ------------REAFGYQP-DG-SLLSQATAEFYADRYG--YQARPEWIF 85 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHH------------TTCCSSCC-SS-CCHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHH------------cCCCCCCC-CC-HHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999999885 4667776665311 12457888 77 9999999999998877 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||+|+++.|+|..+...+... |.+++.+|++.+ +|++++++++++ +++++
T Consensus 86 ~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~----~d~~~l~~~l~~------~~~~v 154 (377)
T 3fdb_A 86 PIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSAT-QREGIFIDATGG----INLHDVEKGFQA------GARSI 154 (377)
T ss_dssp EESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHH-TCCEEEEECTTS----CCHHHHHHHHHT------TCCEE
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEEccCCCC----CCHHHHHHHhcc------CCCEE
Confidence 9999999999999999999999999999999999988888 999999998753 899999999875 68899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC-CCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++ ....++..+. ..+++++++|+||++
T Consensus 155 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~---------~~~~~i~~~s~sK~~ 225 (377)
T 3fdb_A 155 LLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDT---------AASVCITITAPSKAW 225 (377)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHH---------HHHHEEEEECSTTTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHcc---------CCCcEEEEEeChHhc
Confidence 999999999999999999999999999999999999999987766 4444444432 236889999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCc
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GIS 350 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~ 350 (469)
|++|+|+||++++++.+.+.+...... ++++++.+.++.+++.+. .+++++.++.++++++++.+.|+++ +++
T Consensus 226 g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 302 (377)
T 3fdb_A 226 NIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNNHDFLLHEIPKRIPGAK 302 (377)
T ss_dssp TCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred cCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 999999999998666666666554432 457889999888888753 4567888999999999999999985 899
Q ss_pred eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 351 CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+.++.+++++|++++...... +++..+++++||.+.||..|+...++++|++++. +++++++++++|++++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 303 ITPMQATYLMWIDFRDTTIEG------SPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp ECCCSBCSEEEEECTTSCCCS------CHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred EecCCeeEEEEEECcccCCCH------HHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 999999999999998631111 3677788778999999999987667899999995 999999999999999875
Q ss_pred h
Q 043923 431 I 431 (469)
Q Consensus 431 ~ 431 (469)
.
T Consensus 376 ~ 376 (377)
T 3fdb_A 376 H 376 (377)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=365.55 Aligned_cols=348 Identities=17% Similarity=0.257 Sum_probs=283.2
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i 114 (469)
..++|||+.|+++++ ++.+.+++.+.... .....|++..|..+|++++|+++.+.++ ++++++ +|
T Consensus 24 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~l~~~ia~~~~~~~g--~~~~~~~~v 90 (376)
T 2dou_A 24 GVGLIDLSIGSTDLPPPEAPLKALAEALND-----------PTTYGYCLKSCTLPFLEEAARWYEGRYG--VGLDPRREA 90 (376)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHTTC-----------GGGSSCCCHHHHHHHHHHHHHHHHHHHS--CCCCTTTSE
T ss_pred CCCEEeccCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccE
Confidence 346899999999874 46677777653211 1245788766889999999999987766 334566 99
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+|+ +++|.+|++++++++++ ++++
T Consensus 91 ~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~--~~~~~~d~~~l~~~l~~------~~~~ 161 (376)
T 2dou_A 91 LALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVA-SLRTFLIPL--REDGLADLKAVPEGVWR------EAKV 161 (376)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHT-TCEEEEECB--CTTSSBCGGGSCHHHHH------HEEE
T ss_pred EEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHc-CCEEEEeeC--CCCCCCCHHHHHHhhcc------CceE
Confidence 99999999999999999999999999999999999888877 999999998 35778899999998865 7899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++. ..++..+.. ..+++++++|+||+|
T Consensus 162 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~--------~~~~~i~~~s~sK~~ 232 (376)
T 2dou_A 162 LLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPG--------AKERVVELFSLSKSY 232 (376)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSTT--------GGGTEEEEEEHHHHH
T ss_pred EEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCC--------CCCcEEEEecchhhc
Confidence 99999999999999999999999999999999999999998766542 234444322 346789999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|++|+|+||+++++ .+.+.+...... .+.+.+.|.++.++|++. .+++++.++.++++++.+.+.|+++ +++.
T Consensus 233 ~~~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~ 307 (376)
T 2dou_A 233 NLAGFRLGFALGSE-EALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRERALGMAEALKGV-LSLL 307 (376)
T ss_dssp TCGGGCCEEEEECH-HHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHTTT-SEEC
T ss_pred CChhheeEEEecCH-HHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence 99999999999854 444444433222 246888999999999773 4568888999999999999999988 8888
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
++.+|+|+|++++... +..++++.++++ ||.+.||..|+...++++||+++. +++++++++++|++++
T Consensus 308 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 308 PPRATMYLWGRLPEGV------DDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp CCCBSSEEEEECCTTC------CHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred CCCeeEEEEEECCCCC------CHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 8888999999997422 123577777765 999999998875457899999985 8999999999998865
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-45 Score=363.13 Aligned_cols=345 Identities=16% Similarity=0.212 Sum_probs=280.9
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
++|||+.|+|+++ ++.+.+++.+. ......|++..|..+||+++|+++.+.++ +++++++|++|
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~~t 88 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNH-------------THSLNIYPKSAFEESLRAAQRGFFKRRFK--IELKENELIST 88 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTT-------------GGGGGSCCCTTCCHHHHHHHHHHHHHHHS--CCCCGGGEEEE
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHh-------------hhhcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEEEC
Confidence 8899999999985 56778887764 13456899888999999999999988876 34578999999
Q ss_pred CChHHHHHHHHHHhcCC--CCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 118 AGATSANETLMFCLAEP--GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~--gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+++++..++.+++++ ||+|+++.|+|..+...+... |.+++.+|++.++++.+ ++++++.+ ++++|
T Consensus 89 ~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~---~l~~~~~~------~~~~v 158 (376)
T 3ezs_A 89 LGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFI-KAKSLLMPLTKENDFTP---SLNEKELQ------EVDLV 158 (376)
T ss_dssp SSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTSCC---CCCHHHHH------HCSEE
T ss_pred cCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHc-CCEEEEcccCCCCCcch---hHHhhhcc------CCCEE
Confidence 99999999999999999 999999999999999988887 99999999886555544 55666654 78899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..+.......+ +.+..+++++++|+||++|
T Consensus 159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~i~~~s~sK~~g 234 (376)
T 3ezs_A 159 ILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLA---GNEAFKNVLVIHSLSKRSS 234 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHT---TCTTCTTEEEEEESTTTTT
T ss_pred EEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccc---cccccCcEEEEecchhccC
Confidence 9999999999999999999999999999999999999998777653 34544432100 0002478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
++|+|+||+++++ .+.+.+..... .++++++.|.++.+++.+.++ +++.+++++++++.+.+.|+ ++. .
T Consensus 235 ~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~l~--~~~--~ 305 (376)
T 3ezs_A 235 APGLRSGFIAGDS-RLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRH----AEFFRNIYANNLKLARKIFK--NTL--I 305 (376)
T ss_dssp CGGGCCEEEEECH-HHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHH----HHHHHHHHHHHHHHHHHHST--TCC--C
T ss_pred CccceeEEEeeCH-HHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHHhc--CCC--C
Confidence 9999999999954 45454444432 234788999999999887543 67888899999999999887 655 6
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC--CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH--CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~--~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.+|+|+|++++. ..+++..+++++||.+.||..|+ ...++++||+++. +++++++++++|++++++.
T Consensus 306 ~~~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 306 YPYSFYVYLPVQN---------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEKPLEIIETYRENH 375 (376)
T ss_dssp CSBSSEEEEECSC---------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHHHHHHHHHHHCC-
T ss_pred CCcceEEEEECCC---------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHhc
Confidence 6788999999871 23577777765799999999998 4457899999985 9999999999999998653
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=364.13 Aligned_cols=357 Identities=19% Similarity=0.243 Sum_probs=294.8
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|||+.+.+.++ ++.+.+++.+... .....|++. ..++++++++++.+.++ +++++++|++
T Consensus 27 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~i~~ 90 (391)
T 3dzz_A 27 EKELPMWIAEMDFKIAPEIMASMEEKLK------------VAAFGYESV--PAEYYKAVADWEEIEHR--ARPKEDWCVF 90 (391)
T ss_dssp TTCEECCSSCCSSCCCHHHHHHHHHHHT------------TCCCCCBCC--CHHHHHHHHHHHHHHHS--CCCCGGGEEE
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHh------------cCcCCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 37999999988885 4667777765311 123467655 58999999999998877 3467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
|+|+++++..++.+++++||.|+++.|+|..+...+... |.+++.+|++ .++.|.+|++++++++++ +++++|
T Consensus 91 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v 164 (391)
T 3dzz_A 91 ASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGN-GRRVISSDLIYENSKYSVNWADLEEKLAT-----PSVRMM 164 (391)
T ss_dssp ESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHT-TCEEEECCCEEETTEEECCHHHHHHHHTS-----TTEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHc-CCEEEEeeeeecCCceeecHHHHHHHHhc-----cCceEE
Confidence 999999999999999999999999999999999988887 9999999986 456688999999999862 289999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+.+..+.++..+... ..++++++.|+||++|
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-------~~d~~i~~~s~sK~~g 237 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWD-------AKNWVVSLISPSKTFN 237 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTT-------TGGGEEEEECSHHHHT
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCcc-------ccCcEEEEEeChhhcc
Confidence 999999999999999999999999999999999999999887776555565555321 2468999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHh---cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCc
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKM---SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GIS 350 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~ 350 (469)
++|+|+||++++++.+.+.+... ...++.+++.+.++.+++... .+++++.+++++++++++.+.|++. |++
T Consensus 238 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 314 (391)
T 3dzz_A 238 LAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRDNFAYAREFLAKEVPEVK 314 (391)
T ss_dssp CTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred ccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCcE
Confidence 99999999999756665555443 233457788888888877653 4567888999999999999999984 899
Q ss_pred eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 351 CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+.++.+++++|++++... .+..+++..+++++||.+.||..|+..+++++||+++ .+++++++++++|++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 315 VLDSNASYLAWVDISALG-----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp ECCCCBSSEEEEECGGGC-----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC-SCHHHHHHHHHHHHHHHHT
T ss_pred EeccCceEEEEEehhhcC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 999999999999987521 1234677777767799999999998767789999999 5999999999999999987
Q ss_pred hc
Q 043923 431 IT 432 (469)
Q Consensus 431 ~~ 432 (469)
.+
T Consensus 389 ~~ 390 (391)
T 3dzz_A 389 LN 390 (391)
T ss_dssp CC
T ss_pred hh
Confidence 54
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-45 Score=365.59 Aligned_cols=347 Identities=20% Similarity=0.395 Sum_probs=280.2
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|||+.|.+.++ ++.+.+++.+..... .......|++..|..+|++++++++++.++ +++++++|++
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--------~~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~~ 104 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDY--------DSVALHGYTSAQGDVETRAAIAEFLNNTHG--THFNADNLYM 104 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHS--------CHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcC--------CccccCCcCCCCCcHHHHHHHHHHHHHHhC--CCCChHHEEE
Confidence 46899999977654 466666666531100 001156798888999999999999998877 4468899999
Q ss_pred eCChHHHHHHHHHHhcCCC-CEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPG-EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
|+|+++++..++.+++++| |.|+++.|+|..+...+... |++++.+|++. ++|.+|++++++++++ ++++|
T Consensus 105 ~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 176 (398)
T 3ele_A 105 TMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAA-GARLVEVPADT-EHFQIDFDALEERINA------HTRGV 176 (398)
T ss_dssp ESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCT-TTSSCCHHHHHHTCCT------TEEEE
T ss_pred ccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCC-cCCcCCHHHHHHHhCc------CCCEE
Confidence 9999999999999999999 99999999999999988887 99999999875 4688999999998864 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHh------cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITE------KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~------~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++++|+||||.+++.+++++|+++|++ ||++||+||+|+++.+++........ ..+++++++|
T Consensus 177 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-----------~~~~~i~~~s 245 (398)
T 3ele_A 177 IINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK-----------YYDNTLVCYS 245 (398)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG-----------TCSSEEEEEE
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh-----------hcCCeEEEEe
Confidence 999999999999999999999999999 99999999999998776543333221 3368999999
Q ss_pred CccccCCCcceEEEEEecCHH-----HHHHHHHh---cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDM-----VVAAATKM---SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLV 341 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~-----~~~~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 341 (469)
+||+||++|+|+||+++++.. +...+... .....++.+.|.++..++.+... ++.++++++++.
T Consensus 246 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--------~~~~~~~~~~l~ 317 (398)
T 3ele_A 246 YSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGD--------INAYKENRDLLY 317 (398)
T ss_dssp STTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCC--------HHHHHHHHHHHH
T ss_pred hhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHH--------HHHHHHHHHHHH
Confidence 999999999999999997652 22222221 12334677888888888876542 456677888899
Q ss_pred HHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHH
Q 043923 342 SGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 421 (469)
Q Consensus 342 ~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l 421 (469)
+.|+++|+++.++.+|+|+|++++.. +..++++. +.++||.+.||..|+. ++++||+++ .+++++++++
T Consensus 318 ~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-l~~~gi~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l 386 (398)
T 3ele_A 318 EGLTRIGYHCFKPDGAFYMFVKALED-------DSNAFCEK-AKEEDVLIVAADGFGC--PGWVRISYC-VDREMIKHSM 386 (398)
T ss_dssp HHHHHHTCCEECCSBSSEEEEECSSS-------CHHHHHHH-HHTTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHH
T ss_pred HHHHHcCCeecCCCeeEEEEEEcCCC-------CHHHHHHH-HHHCCEEEeCccccCC--CCeEEEEec-CCHHHHHHHH
Confidence 99988899999999999999998742 12345554 4678999999998874 679999998 5999999999
Q ss_pred HHHHHHHHhhc
Q 043923 422 QRLKAFVDSIT 432 (469)
Q Consensus 422 ~~L~~~l~~~~ 432 (469)
++|++++++.+
T Consensus 387 ~~l~~~l~~~~ 397 (398)
T 3ele_A 387 PAFEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998765
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=367.12 Aligned_cols=359 Identities=16% Similarity=0.211 Sum_probs=289.7
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|+|+.+.++++ ++.+.+++.+... .....|++. ..+|++++|+++++.++ +++++++|+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~ 93 (399)
T 1c7n_A 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYTGP--TEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (399)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeeeecCCCCCCCHHHHHHHHHHHh------------cCCCCCCCC--cHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 457899999998775 5667776665310 123567764 79999999999988766 346788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+|+++|+..++.+++++||.|+++.|+|.++...+... |++++.+|++ .+++|.+|++++++++++ +++++
T Consensus 94 ~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~ 167 (399)
T 1c7n_A 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKA 167 (399)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHTC-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEecccccCCCCEEEcHHHHHHHhcc-----CCCcE
Confidence 9999999999999999999999999999999999888877 9999999986 334578999999998862 27899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..+.+. ..++++++.|+||++
T Consensus 168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-------~~~~~i~~~s~sK~~ 240 (399)
T 1c7n_A 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ-------LADKTITFTAPSKTF 240 (399)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH-------HHTTEEEEECSHHHH
T ss_pred EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcc-------ccCcEEEEEeChhhc
Confidence 9999999999999999999999999999999999999999877765544455444210 136889999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc---ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-c-CC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-A-GI 349 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-g~ 349 (469)
|++|+|+||++++++.+.+.+...... .+++++.|.++.++|... .+++++.++.++++++++.+.|++ + ++
T Consensus 241 ~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 317 (399)
T 1c7n_A 241 NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQRIVKDFFEVNHPEI 317 (399)
T ss_dssp TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred cccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999766555544443322 246888998888888643 456788889999999999999998 5 88
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
++.++.+++++|++++... .+..+++..+++++||.+.||..|+...++++||+++. .++++++++++|+++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~ 391 (399)
T 1c7n_A 318 KAPLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALK 391 (399)
T ss_dssp BCCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred eEecCCceEEEEEEcccCC-----CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHH
Confidence 8888889999999997420 11335777776678999999998875557899999986 68999999999999998
Q ss_pred hhcc
Q 043923 430 SITT 433 (469)
Q Consensus 430 ~~~~ 433 (469)
+.++
T Consensus 392 ~~~~ 395 (399)
T 1c7n_A 392 DLKN 395 (399)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 7765
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=374.87 Aligned_cols=355 Identities=17% Similarity=0.216 Sum_probs=284.6
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.|++.++ ++.+.+++.+..... ........|++..|..+|++++|+++. ++ +++++++|+
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~-------~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g--~~~~~~~i~ 136 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGL-------ATREGYSGYGAEQGQGALREAVASTFY--GH--AGRAADEIF 136 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGG-------GGSCCCCCSTTTTCCHHHHHHHHHHHH--TT--TTCCGGGEE
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhh-------ccccCCCCCCCCCCcHHHHHHHHHHHH--cC--CCCCHHHEE
Confidence 346899999998885 456666665531100 000234578888899999999999997 33 447889999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCE----------EEEeeccCCCCcccCHHHHHHHHHHH
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVE----------IVPIQCTSLNGFQITETAIEEAYQLA 185 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~----------~~~v~~~~~~~~~~d~~~l~~~i~~~ 185 (469)
+|+|+++++..+ .+++++||.|+++.|+|.++...+... |.+ ++.+|++.++++..|++++
T Consensus 137 ~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 207 (449)
T 3qgu_A 137 ISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMM-GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------- 207 (449)
T ss_dssp EESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHH-TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred EccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHc-CCcccccccccceeEEEecccccCCcCChhHc-------
Confidence 999999999998 888899999999999999999998887 988 9999998766777765432
Q ss_pred HhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEE
Q 043923 186 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i 265 (469)
+++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++....++..+.. ..++++
T Consensus 208 ----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~--------~~~~~i 275 (449)
T 3qgu_A 208 ----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG--------ADEVAI 275 (449)
T ss_dssp ----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT--------GGGTEE
T ss_pred ----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC--------CCCcEE
Confidence 27899999999999999999999999999999999999999999998776654455554422 347889
Q ss_pred EEccCccccCCCcceEEEEEecCHHHH-------HHHHHh--cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH
Q 043923 266 IVYSLSKDLGLPGFRVGAIYSNDDMVV-------AAATKM--SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQR 336 (469)
Q Consensus 266 ~i~S~SK~~g~~GlRiG~li~~~~~~~-------~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~ 336 (469)
++.|+||+||++|+|+||++++++.+. ..+... ..+..++++.|.++.+++.+.. .+++++.+++++++
T Consensus 276 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~ 353 (449)
T 3qgu_A 276 ETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFYKEN 353 (449)
T ss_dssp EEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHH
T ss_pred EEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHHHH
Confidence 999999999999999999999765432 122222 2233578899999999987632 35678889999999
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHH
Q 043923 337 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 416 (469)
Q Consensus 337 ~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~ 416 (469)
++++.+.|+++|+++.++.+|+|+|++++ .. +..+++..+++++||.+.||..|+..+++++||++.. ++++
T Consensus 354 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~ 425 (449)
T 3qgu_A 354 AQILKTTFTEMGFSVYGGDDAPYIWVGFP-GK------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SREN 425 (449)
T ss_dssp HHHHHHHHHHTTCCEEESSSSSEEEEECT-TS------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHH
T ss_pred HHHHHHHHHHCCCeeeCCCCeeEEEEECC-CC------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHH
Confidence 99999999999999998888999999997 21 2346778888878999999999987778999999875 9999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 043923 417 LKLSMQRLKAFVDSITT 433 (469)
Q Consensus 417 i~~~l~~L~~~l~~~~~ 433 (469)
+++++++|++++++...
T Consensus 426 i~~~l~~l~~~~~~~~~ 442 (449)
T 3qgu_A 426 ILEAVRRFKEAYGKRNA 442 (449)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999999976655
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=364.28 Aligned_cols=354 Identities=20% Similarity=0.389 Sum_probs=287.3
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|||+.|+++++ ++.+.+++.+... .....|++..|..+|++++++++++.++ +++++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~~ 95 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNILV 95 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEE
Confidence 46899999998874 4556666554210 1134688888899999999999988776 3457889999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++|+..++.+++++||.|+++.|+|..+...+... |++++.+|.+.+.+|.+|++++++++++ ++++|+
T Consensus 96 ~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 168 (388)
T 1j32_A 96 TNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHHhcCc------CceEEE
Confidence 999999999999999999999999999999999888877 9999999987555788999999998864 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..+..+ ..++++++.|+||++|+
T Consensus 169 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~sK~~~~ 241 (388)
T 1j32_A 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE-------AYERSVVCSGFAKTYAM 241 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH-------HHHTEEEEEESTTTTTC
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccc-------ccCCEEEEeechhccCC
Confidence 99999999999999999999999999999999999999887766544555544221 13578999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
+|+|+||++++++ +.+.+..... .+.++.+.|.++.++|... .+++++.+++++++++++.+.|+++ |+++.+
T Consensus 242 ~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 317 (388)
T 1j32_A 242 TGWRVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPK 317 (388)
T ss_dssp TTTCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC
T ss_pred cccceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Confidence 9999999999654 4444433322 2346788888888888643 3457788889999999999999988 888888
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.+++|+|++++.. . .+..+++..+++++||.+.||..|+. ++++|++++ .+++++++++++|++++++.
T Consensus 318 ~~~~~~~~~~~~~~-~----~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 318 PDGAFYMFPSIAKT-G----RSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYA-TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp CCBTTEECCBCGGG-T----CCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEecCCC-C----CCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEec-CCHHHHHHHHHHHHHHHHHh
Confidence 88899999988641 0 12345777777667999999998864 578999998 59999999999999998753
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=366.88 Aligned_cols=365 Identities=21% Similarity=0.340 Sum_probs=287.6
Q ss_pred CCCCeeeeecccc----cc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHc----CCC
Q 043923 36 NPTGIIQMGLAEN----QL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIR----GNK 106 (469)
Q Consensus 36 ~~~~~i~L~~~~n----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~----~~~ 106 (469)
++.++|+|+.+.+ .+ +++.+.+++.+.... .....|++..|..+||+++|+++++.+ ..+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~ 99 (416)
T 1bw0_A 31 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS-----------QECNGYFPTVGSPEAREAVATWWRNSFVHKEELK 99 (416)
T ss_dssp SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT-----------TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTG
T ss_pred cCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC-----------CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCC
Confidence 3467899999974 23 456666666553110 123568887899999999999998421 112
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 107 VTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 107 ~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
+++++++|++|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+|++++++|.+|++++++++++
T Consensus 100 ~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~-- 176 (416)
T 1bw0_A 100 STIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEADLDEIRRLKDD-- 176 (416)
T ss_dssp GGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHHHCCT--
T ss_pred CCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHc-CcEEEEeecCcccCCCCCHHHHHHHhcc--
Confidence 4467899999999999999999999999999999999999999888877 9999999987655688999999988764
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC----CccchhhhhhccccccCCcCC
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP----GFVSIMEILKDRNCENTQVWN 262 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~ 262 (469)
+++++++++|+||||.+++.+++++|+++|++||++||+||+|.++.+++. .+.++..+. ..+
T Consensus 177 ----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~---------~~~ 243 (416)
T 1bw0_A 177 ----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE---------TTV 243 (416)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC---------CSC
T ss_pred ----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc---------CCC
Confidence 788999999999999999999999999999999999999999998777654 334443331 234
Q ss_pred eEEEEccCccccCCCcceEEEEEecCH-----HHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH
Q 043923 263 RVHIVYSLSKDLGLPGFRVGAIYSNDD-----MVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQR 336 (469)
Q Consensus 263 ~~i~i~S~SK~~g~~GlRiG~li~~~~-----~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~ 336 (469)
++++++|+||+|+++|+|+||++++++ .+........ ..++++++.|.++.++|+... ..++++.+++++++
T Consensus 244 ~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~ 321 (416)
T 1bw0_A 244 PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEES 321 (416)
T ss_dssp CEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHH
T ss_pred cEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHHH
Confidence 689999999999999999999998764 2222222221 234578899999999987532 45678888899999
Q ss_pred HHHHHHHHHhc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHH
Q 043923 337 HRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 415 (469)
Q Consensus 337 ~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e 415 (469)
++++.+.|+++ |+++..+.+|+|+|++++...... ..+..+++..+++++||.+.||..|+. ++++||+++ .+++
T Consensus 322 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~-~~~e 397 (416)
T 1bw0_A 322 AMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRD-IKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPVE 397 (416)
T ss_dssp HHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSS-CCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCHH
T ss_pred HHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCC-CCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEec-CCHH
Confidence 99999999987 888877888899999886421000 012346777777778999999998863 679999997 5899
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 043923 416 TLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 416 ~i~~~l~~L~~~l~~~~~ 433 (469)
++++++++|++++++.++
T Consensus 398 ~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 398 VYREAVERIKAFCQRHAA 415 (416)
T ss_dssp HHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999987665
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=363.66 Aligned_cols=349 Identities=20% Similarity=0.291 Sum_probs=283.9
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEEE
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIVL 116 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~~ 116 (469)
++|+|+.+.+.++ ++.+.+++.+... .....|++..|..+|++++++++.+.++ ++++++ +|++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~~ 96 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITV 96 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHH------------hhccCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEEE
Confidence 6899999988764 4667766665310 1135788878899999999999988766 346788 9999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|+++.|+|+.+...+... |++++.+|++.+ +|.+|++++++++++ ++++|+
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~ 168 (386)
T 1u08_A 97 TAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQPP-HFRVDWQEFAALLSE------RTRLVI 168 (386)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCTT-TCCCCHHHHHHHCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeecCcc-cCcCCHHHHHHhhcc------cCEEEE
Confidence 999999999999999999999999999999999988877 999999998753 578999999988753 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++|+||||.++|.+++++|+++|++||++||+||+|.++.+++....++..+.. ..+++++++|+||.||+
T Consensus 169 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~~~~i~~~s~sK~~~~ 240 (386)
T 1u08_A 169 LNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ--------LRERAVAVSSFGKTYHM 240 (386)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH--------HHTTEEEEEEHHHHTTC
T ss_pred EeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC--------ccCcEEEEecchhhcCC
Confidence 9999999999999999999999999999999999999988776654445544421 23689999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
+|+|+||++++++ +.+.+.... ..++.+.+.|.++.++|+.. .+++++.+++++++++++.+.|+++|+++.++
T Consensus 241 ~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 316 (386)
T 1u08_A 241 TGWKVGYCVAPAP-ISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPC 316 (386)
T ss_dssp GGGCCEEEECCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEECCC
T ss_pred cccceEEEEcCHH-HHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 9999999999644 444444332 23446788888888888753 34578888999999999999999889998888
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--CCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
.+|+|+|++++.... .+..++++.+++++||.+.||..|+. ..++++||+++. +++++++++++|++
T Consensus 317 ~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 317 EGTYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp CBSSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred CceEEEEEecCCCCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 889999999874300 12335777787788999999988864 246799999985 89999999999864
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=361.38 Aligned_cols=345 Identities=23% Similarity=0.402 Sum_probs=282.4
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.++++++ ++.+.+++.+... .....|++..|..+|++++|+++++.++ +++++++|++
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~v~~ 106 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVVV 106 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEEE
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 46899999998765 4556666655311 1124688778899999999999987766 3457899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+|.+++++|.+|++++++++++ ++++|+
T Consensus 107 ~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 179 (389)
T 1o4s_A 107 TNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVL 179 (389)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEE
T ss_pred ecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------CceEEE
Confidence 999999999999999999999999999999999888877 9999999987545788999999988764 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++ ...++..+.. ..+++++++|+||++|+
T Consensus 180 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~--------~~~~~i~~~s~sK~~~~ 250 (389)
T 1o4s_A 180 INSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSE--------GFDRIVYINGFSKSHSM 250 (389)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCS--------SSTTEEEEEESTTTTTC
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCC--------CCCcEEEEeechhhcCC
Confidence 99999999999999999999999999999999999999876654 3345555521 24789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
+|+|+||++++++ +.+.+..... .+.++++.|.++.++|.+. +++.++.++++++++.+.|+++|+++.++
T Consensus 251 ~G~r~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 323 (389)
T 1o4s_A 251 TGWRVGYLISSEK-VATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEP 323 (389)
T ss_dssp GGGCCEEEECCHH-HHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred cccceEEEEeCHH-HHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 9999999999554 4444443322 2447888899888888764 36667888889999999999889888888
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
.+|+|+|++++ . +..++++.+++++||.+.||..|+. ++++||+++. +++++++++++|++++++
T Consensus 324 ~~~~~~~~~~~--~------~~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~-~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 324 EGAFYLFFKVR--G------DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLNS 388 (389)
T ss_dssp SBSSEEEEECS--S------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHTC
T ss_pred CcceEEEEeCC--C------CHHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 88999999986 1 1235777777577999999998874 5699999995 999999999999998864
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=366.58 Aligned_cols=357 Identities=20% Similarity=0.319 Sum_probs=285.9
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEEE
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIVL 116 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~~ 116 (469)
++|+|+.+.+.++ ++.+.+++.+... .....|++..|..+|++++|+++++.++ ++++++ +|++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~~ 91 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIA------------GGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVLV 91 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEEE
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCCCCCceEEE
Confidence 6799999998764 4666666665310 1145788888899999999999988776 345687 9999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCC-CCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSL-NGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
|+|+++|+..++.+++++||.|+++.|+|..+...+... |++++.+|++.+ .+|.+|++++++++++ ++++|
T Consensus 92 t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (411)
T 2o0r_A 92 TVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMA-GAHRVTVPLVPDGRGFALDADALRRAVTP------RTRAL 164 (411)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHHHCCT------TEEEE
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCEEEEeeccccccCCCCCHHHHHHhhcc------CceEE
Confidence 999999999999999999999999999999999888877 999999998753 3577999999998864 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++....++..+.. ..++++++.|+||.+|
T Consensus 165 ~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~~~~i~~~s~sK~~~ 236 (411)
T 2o0r_A 165 IINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDG--------MAERTITISSAAKMFN 236 (411)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT--------TGGGEEEEEEHHHHTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccC--------CCCCEEEEeechhhcC
Confidence 99999999999999999999999999999999999999987776544445544411 2468999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
++|+|+||++++ +.+.+.+..... .++.+++.|.++.++|+.. .+++++.+++++++++++.+.|++.|+++.+
T Consensus 237 ~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 312 (411)
T 2o0r_A 237 CTGWKIGWACGP-AELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFAVHD 312 (411)
T ss_dssp CTTTCEEEEECC-HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHTCEECC
T ss_pred CccceEEEEeeC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 999999999995 444444443322 2346778888888888643 5567888999999999999999988999888
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-----------CCCeEEEEeecCCHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-----------EPGWFRVCFANMSEDTLKLSMQ 422 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-----------~~~~iRi~~~~~~~e~i~~~l~ 422 (469)
+.+|+|+|++++.... .+..+++..+++++||.+.||..|... .++++||+++. ++++++++++
T Consensus 313 ~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~~~ 387 (411)
T 2o0r_A 313 SYGTYFLCADPRPLGY----DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAIR 387 (411)
T ss_dssp CCBSSEEEEECGGGTC----CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHHHHHH
T ss_pred CCeeEEEEEecCCCCC----CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHHHHHH
Confidence 8889999999975210 123467777877779999999888432 35789999985 8999999999
Q ss_pred HHHHHHHhhcc
Q 043923 423 RLKAFVDSITT 433 (469)
Q Consensus 423 ~L~~~l~~~~~ 433 (469)
+|++++++.+.
T Consensus 388 ~l~~~~~~~~~ 398 (411)
T 2o0r_A 388 RLSVLAERPAT 398 (411)
T ss_dssp HHGGGGC----
T ss_pred HHHHHHhccCc
Confidence 99988765544
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=364.73 Aligned_cols=359 Identities=16% Similarity=0.273 Sum_probs=288.9
Q ss_pred CCCeeeeecc-ccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-Cc
Q 043923 37 PTGIIQMGLA-ENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SK 113 (469)
Q Consensus 37 ~~~~i~L~~~-~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~ 113 (469)
+..+|||+.| .++++ ++.+.+++.+.... .....|++..|..++++++++++.+.++ +++++ ++
T Consensus 38 ~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~l~~~l~~~~g--~~~~~~~~ 104 (407)
T 3nra_A 38 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQS-----------GGVQAYTEYRGDLGIRDLLAPRLAAFTG--APVDARDG 104 (407)
T ss_dssp CSCCEETTSCCTTTSCCCTTHHHHHHHHHHH-----------THHHHSCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTS
T ss_pred CCceeeecCcCCCCCCCcHHHHHHHHHHHhc-----------CCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCc
Confidence 4468999996 44343 46666666653110 1234688888999999999999998877 33445 79
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC----CCCcccCHHHHHHHHHHHHhcC
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS----LNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
|++|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+|++. +.++.+|++++++++++
T Consensus 105 i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----- 178 (407)
T 3nra_A 105 LIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----- 178 (407)
T ss_dssp EEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-----
T ss_pred EEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHc-CCEEEEeecccccccCcCCCcCHHHHHHHHhh-----
Confidence 999999999999999999999999999999999999888887 99999999842 25678999999999875
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++++|++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..+.. +..+++++++|
T Consensus 179 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~-------~~~~~~i~~~s 250 (407)
T 3nra_A 179 -GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAA-------VDAENVVTIMG 250 (407)
T ss_dssp -TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTT-------SCGGGEEEEEC
T ss_pred -CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCc-------ccCCcEEEEeC
Confidence 7889999999999999999999999999999999999999999988777665555554420 03578999999
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhcc-c-ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-F-GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+||+||++|+|+||+++++ .+.+.+..... + .+.+++.+.++.+++... ..++++.+++++++++.+.+.|+++
T Consensus 251 ~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 326 (407)
T 3nra_A 251 PSKTESLSGYRLGVAFGSR-AIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDELLHVLRGC 326 (407)
T ss_dssp SSSTTCCGGGCCEEEEECH-HHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCC---TTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccccCCCeeeEEEEEcCH-HHHHHHHHHHhhhccCCChHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999954 44444443322 2 235678888888888753 2346777888888999999999988
Q ss_pred -CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 348 -GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 348 -g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
++.+..+.+|+|+|+.++... .+..+++..|++++||.+.||..|++..++++||+++. +++++++++++|++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 400 (407)
T 3nra_A 327 EGVFARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVT 400 (407)
T ss_dssp TTCBCCCCSBSSEECCBCCCBS-----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHH
T ss_pred CCceeccCCeeEEEEEeCCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHH
Confidence 888888888899999987521 12335777777777999999999987778899999996 99999999999999
Q ss_pred HHHhhc
Q 043923 427 FVDSIT 432 (469)
Q Consensus 427 ~l~~~~ 432 (469)
++++.+
T Consensus 401 ~~~~~~ 406 (407)
T 3nra_A 401 LVERYR 406 (407)
T ss_dssp HHHHHB
T ss_pred HHHHhh
Confidence 998765
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-44 Score=356.04 Aligned_cols=332 Identities=17% Similarity=0.175 Sum_probs=278.0
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|+|+++ ++.+.+++.+. ......|++..+ .+||+++|++++ +++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~v~~ 87 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQN-------------ANKAHLYPDDSM-IELKSTLAQKYK--------VQNENIII 87 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHH-------------GGGTTSCCCTTC-HHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCCCh-HHHHHHHHHHhC--------CCcceEEE
Confidence 57899999999985 56677777653 134567887766 999999999985 57899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||+|+++.|+|..+...+... |++++.+|++ +.++ +|++++++++++ ++++|+
T Consensus 88 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~-~~~~-~d~~~l~~~l~~------~~~~v~ 158 (365)
T 3get_A 88 GAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQC-GAKCYKTQSI-THNL-DEFKKLYETHKD------EIKLIF 158 (365)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHH-TCEEEECSSS-SCCH-HHHHHHHHHTTT------TEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEecC-CCCC-CCHHHHHHHhCC------CCCEEE
Confidence 999999999999999999999999999999999988888 9999999982 3567 899999998864 899999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc--CCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF--SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
+++|+||||.+++.+++++|+++| ++|+++|+||+|+++.| .+....+...... ..+++++++|+||++
T Consensus 159 ~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~s~sK~~ 229 (365)
T 3get_A 159 LCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIK--------EFDNVLYLGTFSKLY 229 (365)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH--------HCTTEEEEEESSSTT
T ss_pred EcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhc--------cCCCEEEEeecchHh
Confidence 999999999999999999999998 57999999999998765 4433345544433 447899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
|++|+|+||+++ ++.+.+.+......+.++.+.+.++.++|.+. +++++.+++++++++++.+.|+++|+++.++
T Consensus 230 ~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 304 (365)
T 3get_A 230 GLGGLRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDD----EFTEKTLENNFSQMELYKEFAKKHNIKIIDS 304 (365)
T ss_dssp SCTTTCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC
T ss_pred cCcchheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC
Confidence 999999999999 55555656555555668999999999999864 4578888999999999999999999988776
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
.+ .|+|++++.. +..++...|. ++||.+.||..|+ ++++|++++ +++++++++++|++++
T Consensus 305 ~~-~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~g~~~~---~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 305 YT-NFITYFFDEK-------NSTDLSEKLL-KKGIIIRNLKSYG---LNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SS-SEEEEECSSS-------CHHHHHHHHH-TTTEECEECGGGT---CSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred CC-eEEEEECCCC-------CHHHHHHHHH-HCCEEEEECccCC---CCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 65 6789999753 2335666665 5699999999887 789999998 7999999999999876
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=359.63 Aligned_cols=354 Identities=15% Similarity=0.224 Sum_probs=283.1
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHH-HHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPA-FKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~-Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
+.++|||+.+.+.++ ++.+.+++.+... .....|++. ..+ ||+++|+++++.++ +.+++++|
T Consensus 27 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~~lr~~la~~l~~~~g--~~~~~~~v 90 (390)
T 1d2f_A 27 TADLLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRW--KNDEFLAAIAHWFSTQHY--TAIDSQTV 90 (390)
T ss_dssp ---CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCS--CCHHHHHHHHHHHHHHSC--CCCCGGGE
T ss_pred CCCeeEeeecCCCCCCCHHHHHHHHHHHh------------CCCCCCCCC--ChHHHHHHHHHHHHHhcC--CCCCHHHE
Confidence 357899999998774 4667777765311 123467764 578 99999999988766 34678999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCC-CCcccCHHHHHHHHHHHHhcCCcee
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSL-NGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
++|+|+++++..++.+++++||.|+++.|+|.++...+... |++++.+|++.+ ++|.+|++++++++++ .+++
T Consensus 91 ~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~ 164 (390)
T 1d2f_A 91 VYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECK 164 (390)
T ss_dssp EEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEE
T ss_pred EEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHC-CCEEEEeecccCCCccccCHHHHHHHhcc-----CCCe
Confidence 99999999999999999999999999999999999888877 999999998754 3678999999998863 2689
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..+.+ .. ... +.|+||+
T Consensus 165 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~-~d~-~~s~sK~ 234 (390)
T 1d2f_A 165 IMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR--------GD-WAL-LTSGSKS 234 (390)
T ss_dssp EEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC--------SS-EEE-EECSHHH
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcch--------hh-Hhh-ccCccHh
Confidence 9999999999999999999999999999999999999999987776554455544421 11 123 8999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhc----ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-c-
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMS----SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-A- 347 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~- 347 (469)
+|++|+|+||++++++.+.+.+.... .+++++.+.+.++.+++... .+++++.++.++++++.+.+.|++ +
T Consensus 235 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 311 (390)
T 1d2f_A 235 FNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNLTYIADKMNAAFP 311 (390)
T ss_dssp HTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999997655655544332 24457888888888888642 456788889999999999999998 5
Q ss_pred CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 348 GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 348 g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
++++.++.+++++|++++... .+..+++..+++++||.+.||..|+...++++||+++. +++++++++++|+++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~ 385 (390)
T 1d2f_A 312 ELNWQIPQSTYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINA 385 (390)
T ss_dssp SCCCCCCSBCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CCEEecCCccEEEEEEccccC-----CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 888888889999999997530 11335777777678999999998875457899999996 789999999999999
Q ss_pred HHhh
Q 043923 428 VDSI 431 (469)
Q Consensus 428 l~~~ 431 (469)
+++.
T Consensus 386 l~~~ 389 (390)
T 1d2f_A 386 IRAV 389 (390)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8764
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=364.61 Aligned_cols=352 Identities=14% Similarity=0.174 Sum_probs=283.3
Q ss_pred CCeeeeecccc-ccC-hHHH--HHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAEN-QLS-FDLL--ESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n-~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
.++|||+.|.+ +++ ++.+ .+++.+... . .....|++..|..+|++++|+++.+.+ +++++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~----------~-~~~~~y~~~~g~~~lr~~ia~~~~~~~---~~~~~~~ 112 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLT----------P-DEIFPYAPPQGIEELRDLWQQKMLRDN---PELSIDN 112 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCC----------G-GGTSSCCCTTCCHHHHHHHHHHHHHHC---TTCCGGG
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcC----------c-ccccccCCCCCCHHHHHHHHHHHhccC---cccCCCc
Confidence 47899999998 664 3333 333322210 0 135679988899999999999997663 3467888
Q ss_pred ---EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhh-hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 114 ---IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKW-RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 114 ---i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
|++|+|+++|+..++.+++++||.|+++.|+|..+...+.. . |++++.+|++.++ |.+|++++++++++. +
T Consensus 113 ~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~-~~~d~~~l~~~l~~~---~ 187 (430)
T 2x5f_A 113 MSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRN-GANLQTYPIFDKD-GHYTTDSLVEALQSY---N 187 (430)
T ss_dssp BCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTT-CCEEEEECCBCTT-SCBCSHHHHHHHHHC---C
T ss_pred cceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhc-CCeEEEEeccCcc-CCcCHHHHHHHHHhc---C
Confidence 99999999999999999999999999999999999988887 7 9999999987533 778999999998741 2
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh-----cCeEEEEeccccccccCCCCccchh-hhhhccccccCCcCCe
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE-----KNIHLISDEIYSGTVFSSPGFVSIM-EILKDRNCENTQVWNR 263 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~-----~~~~iI~Deay~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~ 263 (469)
++++++++++|+||||.+++.+++++|+++|++ ||++||+||+|.++.+++..+.++. .+.. ..++
T Consensus 188 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--------~~~~ 259 (430)
T 2x5f_A 188 KDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTN--------LHSN 259 (430)
T ss_dssp SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHT--------TCCT
T ss_pred CCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhh--------ccCC
Confidence 368899999999999999999999999999999 9999999999998777655444554 4422 2467
Q ss_pred ---EEEEccCccccCCCcceEEEEEe---cCHHHHHHHHHhc------ccccCcHHHHHHHHHHhc-CchhhHHHHHHHH
Q 043923 264 ---VHIVYSLSKDLGLPGFRVGAIYS---NDDMVVAAATKMS------SFGLVSSQTQYLLSALLS-DKKFTQNYISENK 330 (469)
Q Consensus 264 ---~i~i~S~SK~~g~~GlRiG~li~---~~~~~~~~~~~~~------~~~~~s~~~q~~~~~~l~-~~~~~~~~~~~~~ 330 (469)
+++++|+||+||++|+|+||+++ ++. +.+.+.... ..++++.+.|.++.++|. +..+ .+.+++.+
T Consensus 260 ~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~ 337 (430)
T 2x5f_A 260 AILPIRLDGATKEFFAWGFRVGFMTFGTSDQT-TKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNI 337 (430)
T ss_dssp TEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHH-HHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHH
T ss_pred cceEEEEEecccCCCCCCCCeEEEEEecCCHH-HHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHH
Confidence 89999999999999999999999 554 444443322 234578899999999998 8765 55566689
Q ss_pred HHHHHHHHHHHHHHH----hcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEE
Q 043923 331 KRLKQRHRKLVSGLE----KAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 406 (469)
Q Consensus 331 ~~l~~~~~~l~~~L~----~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iR 406 (469)
++++++++.+.+.|+ +.|+++.++.+|+|+|++++ .. +..+++..+++++||.+.|| .++++|
T Consensus 338 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~------~~~~~~~~l~~~~gi~v~~g------~~~~iR 404 (430)
T 2x5f_A 338 QTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DV------DPEALRKHLIDKYSIGVIAL------NATDIR 404 (430)
T ss_dssp HHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SS------CHHHHHHHHHHHHCEECEEC------SSSEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CC------CHHHHHHHHHHhCCEEEecC------CCCeEE
Confidence 999999999999998 66888888889999999997 21 23357777776579999998 357899
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 407 VCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 407 i~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
|+++..+++++++++++|++++++.
T Consensus 405 is~~~~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 405 IAFSCVEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp EEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhc
Confidence 9999558999999999999998764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=362.11 Aligned_cols=362 Identities=18% Similarity=0.269 Sum_probs=287.7
Q ss_pred CCeeeeecccccc---ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCC-CCCCc
Q 043923 38 TGIIQMGLAENQL---SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVT-FDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~-~~~~~ 113 (469)
.++|||+.+.+.. +++.+.+++.+.... .......|++..|..+||+++|+++.++++ ++ +++++
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~---------~~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 111 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEK---------EYHYTLQYSTTEGDPVLKQQILKLLERMYG--ITGLDEDN 111 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHH---------SHHHHTSCCCTTCCHHHHHHHHHHHHHHHC--CCSCCGGG
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhh---------cchhhcCCCCCCCCHHHHHHHHHHHHhccC--CCCCCccc
Confidence 4789999886532 456666666553110 001245788888999999999999977655 33 56889
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc--CCc
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR--HLK 191 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~--~~~ 191 (469)
|++|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+|++++ .+|++++++++++.... +.+
T Consensus 112 v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~ 187 (425)
T 1vp4_A 112 LIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQ 187 (425)
T ss_dssp EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGG
T ss_pred EEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCC
Confidence 999999999999999999999999999999999999888877 999999998753 38999999998752110 126
Q ss_pred eeEE-EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 192 VKGV-LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 192 ~~~v-vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
+++| ++++|+||||.++|.+++++|+++|++||++||+||+|+++.+++....++..+. ..+++++++|+
T Consensus 188 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~---------~~~~~i~~~s~ 258 (425)
T 1vp4_A 188 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG---------GPERVVLLNTF 258 (425)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH---------CTTTEEEEEES
T ss_pred ceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC---------CCCCEEEEecc
Confidence 8887 5789999999999999999999999999999999999998877665445555542 23688999999
Q ss_pred ccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 043923 271 SKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA- 347 (469)
Q Consensus 271 SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 347 (469)
||+|| +|+|+||+++++ .+.+.+..... .++.+++.|.++.++|++..+ .+++++.++.++++++.+.+.|++.
T Consensus 259 sK~~~-~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 335 (425)
T 1vp4_A 259 SKVLA-PGLRIGMVAGSK-EFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYF 335 (425)
T ss_dssp TTTTC-GGGCEEEEECCH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccc-cccceEEEeeCH-HHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 999999999964 44444433322 234688999999999987544 6678888999999999999999886
Q ss_pred ----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHH
Q 043923 348 ----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSM 421 (469)
Q Consensus 348 ----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l 421 (469)
|+++..+.+|+|+|++++...+.. ++++.++++ ||.+.||..|+.. .++++||+++..+++++++++
T Consensus 336 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~------~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l 408 (425)
T 1vp4_A 336 SDIPGVKWVKSEGGLFIWLTLPEGFDTW------EMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGI 408 (425)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTT------TTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHH
T ss_pred CCCCceEEecCCccEEEEEEcCCCCCHH------HHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHH
Confidence 688877888899999998532221 366777766 9999999988653 467999999866899999999
Q ss_pred HHHHHHHHhhcc
Q 043923 422 QRLKAFVDSITT 433 (469)
Q Consensus 422 ~~L~~~l~~~~~ 433 (469)
++|++++++..+
T Consensus 409 ~~l~~~l~~~~~ 420 (425)
T 1vp4_A 409 KRLREVVLEYGK 420 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987665
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=359.80 Aligned_cols=378 Identities=13% Similarity=0.178 Sum_probs=286.0
Q ss_pred ccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeecccc-----cc-ChHHHHHHHhcCCCccccccCCcccccccccCCC
Q 043923 11 NTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAEN-----QL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD 84 (469)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 84 (469)
....+.+++|..........-. ....++|+|+.|++ ++ +++.+.+++.+... .....|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~--~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~ 78 (418)
T 3rq1_A 13 KGKKLKDVIFVTAGQAQADAKE--NGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD------------SEHVGYAP 78 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHH--HCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH------------HHHHSCCC
T ss_pred CCCCCCchHHHHHHHHHhhhhh--hcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcc------------cccCCCCC
Confidence 3344555555544443332210 01236899999964 44 45677777766421 23467998
Q ss_pred CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 85 ~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
..|.++||+++++++....+.. .+++|++|+|+++|+..++.+++++||.|+++.|+|..|...+... |.+++.+|
T Consensus 79 ~~g~~~lr~~ia~~~~~~~~~~---~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~ 154 (418)
T 3rq1_A 79 IAGIPDFLCAAEKECFGNFRPE---GHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDT-GRTLVTYS 154 (418)
T ss_dssp TTCCHHHHHHHHHHHHGGGCCS---SEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHT-TCEEEEEC
T ss_pred CCChHHHHHHHHHHHhcccCcc---ccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHc-CCEEEEEe
Confidence 8899999999999997654311 1239999999999999999999999999999999999999988887 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCcee-EEEEecC-CCCCCCCCCHHHHHHHHHHHH------hcCeEEEEecccccc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVK-GVLVTNP-SNPLGTTMSRNELNLLVNIIT------EKNIHLISDEIYSGT 236 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~-~vvl~~P-~NPtG~~~s~e~l~~l~~~~~------~~~~~iI~Deay~~~ 236 (469)
++.+ +|.+|++.+++++++.... +++ ++++++| |||||.+++.+++++|+++|+ +||++||+||+|.++
T Consensus 155 ~~~~-~~~~d~~~l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~ 231 (418)
T 3rq1_A 155 LFDE-HNNFNHEAFQNRVNELAAK--QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDY 231 (418)
T ss_dssp SBCT-TSSBCHHHHHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGG
T ss_pred eeCC-CCCcCHHHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccc
Confidence 8643 3789999999998753211 344 7889999 999999999999999999999 899999999999986
Q ss_pred ccCCCCccchhhhhhccccccCCcCCe--EEEEccCccccCCCcceEEEEEe--cCHHHHHHHHHhc------ccccCcH
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNR--VHIVYSLSKDLGLPGFRVGAIYS--NDDMVVAAATKMS------SFGLVSS 306 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~--~i~i~S~SK~~g~~GlRiG~li~--~~~~~~~~~~~~~------~~~~~s~ 306 (469)
.+++....++....++ ..++ +++++||||+||++|+|+||+++ +++.+.+.+.... .+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~-------~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
T 3rq1_A 232 SGEKDEVRAFFNKFSH-------LPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICR 304 (418)
T ss_dssp SSCHHHHHGGGGGGTT-------CCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCH
T ss_pred cCChHHHHHHHHHHHh-------cCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCch
Confidence 6544322233333221 2234 58899999999999999999998 2444444443322 2234788
Q ss_pred HHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHH
Q 043923 307 QTQYLLSALLSDKKFT---QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~l 383 (469)
++|.++..++.+..+. .+.+++.++.++++++.+.+.|+++|+++.++++|+|+|++++. ..++++ .
T Consensus 305 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~-~ 374 (418)
T 3rq1_A 305 PAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDS---------ANAICE-E 374 (418)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECTT---------HHHHHH-H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCCC---------HHHHHH-H
Confidence 9999999999886522 34455677889999999999999989999999999999998752 234555 4
Q ss_pred HHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 384 VYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 384 l~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
|.++||.+.|| ++++||+++.++++++++++++|++++++..+
T Consensus 375 l~~~gi~v~~g-------~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 417 (418)
T 3rq1_A 375 LKKEHIYVIAL-------ANGIRIAACGIPKCQMTGLAEKIYNAMKSLGK 417 (418)
T ss_dssp HHHTTEECEEC-------SSEEEEEGGGSCHHHHTTHHHHHHHHHHHTTC
T ss_pred HHhCCEEEecC-------CCCeEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 56789999997 35799999866999999999999999987654
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=356.91 Aligned_cols=352 Identities=16% Similarity=0.260 Sum_probs=289.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.+++.++ ++.+.+++.+... .....|++ +..++++++++++.+.++ +++++++|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~--~~~~~~~~l~~~l~~~~g--~~~~~~~v~ 94 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLE------------QEIYGYTT--RPDSYNESIVNWLYRRHN--WKIKSEWLI 94 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCBC--CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHh------------CCCCCCCC--CCHHHHHHHHHHHHHHhC--CCCcHHHeE
Confidence 357899999998875 4667777665311 12345654 458999999999998876 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc--CCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT--SLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
+|+|+++|+..++.+++++||+|+++.|+|..+...+... |++++.+|++ .+++|.+|+++++++++ +++
T Consensus 95 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-------~~~ 166 (391)
T 4dq6_A 95 YSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNN-NRELIISPLQKLENGNYIMDYEDIENKIK-------DVK 166 (391)
T ss_dssp EESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHT-TCEEEECCCEECTTSCEECCHHHHHHHCT-------TEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHc-CCeEEeeeeeecCCCceEeeHHHHHHHhh-------cCC
Confidence 9999999999999999999999999999999999988887 9999999987 56678899999998875 278
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++....++..+.++ ..++++++.|+||.
T Consensus 167 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-------~~~~~i~~~s~sK~ 239 (391)
T 4dq6_A 167 LFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKE-------FEKNTITCMAPTKT 239 (391)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHH-------HHHTEEEEECSHHH
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcc-------ccCcEEEEEechhh
Confidence 99999999999999999999999999999999999999999877766555555554321 13688999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhc---ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--C
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMS---SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--G 348 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g 348 (469)
+|++|+|+||++++++.+.+.+.... ..++++.+.+.++.+++... .+++++.+++++++++++.+.|++. +
T Consensus 240 ~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 316 (391)
T 4dq6_A 240 FNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLESNIDFAIKYINENMPK 316 (391)
T ss_dssp HTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999997755655554432 23357788888888887653 4567888999999999999999884 8
Q ss_pred CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 349 ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 349 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
+++.++.+++++|++++... .+..++++.|++++||.++||..|+...++++|++++ .+++++++++++|++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 317 LKVRKPEGTYLLWVDFSALG-----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp SEECCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred CEecCCCccEEEEEEhhhcC-----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc-CCHHHHHHHHHHHHHHh
Confidence 99999999999999997521 1234677777766699999999998777789999999 59999999999999886
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=361.69 Aligned_cols=356 Identities=23% Similarity=0.358 Sum_probs=285.2
Q ss_pred CCeeeeecccc---ccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAEN---QLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
.++|+|+.+.+ .++ ++.+.+++.+... .....|++..|..+|++++|+++++.++ +++++++
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~ 103 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPDD 103 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGG
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCCHHH
Confidence 46899999998 554 4555555544210 1123688888899999999999988776 3467899
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++|+|+++|+..++.+++++||.|++++|+|.++...+... |++++.+|.+.+++|.+|++++++++++ +++
T Consensus 104 v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~ 176 (406)
T 1xi9_A 104 VRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RTK 176 (406)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TEE
T ss_pred EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCCCcCCcCCHHHHHHhhCc------Cce
Confidence 999999999999999999999999999999999999888877 9999999987545788999999998864 789
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCe-EEEEccCcc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR-VHIVYSLSK 272 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~i~i~S~SK 272 (469)
+|++++|+||||.+++.+++++|+++|++||++||+||+|+++.++ ....++..+ ..++ +++++|+||
T Consensus 177 ~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~~~----------~~~~~~i~~~s~sK 245 (406)
T 1xi9_A 177 AIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYE-GEHISPGSL----------TKDVPVIVMNGLSK 245 (406)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSS-SCCCCHHHH----------CSSSCEEEEEESTT
T ss_pred EEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccC-CCCCCHHHc----------CCCceEEEEecccc
Confidence 9999999999999999999999999999999999999999987663 223454444 1367 899999999
Q ss_pred ccCCCcceEEEEE--ecCH---HHHHHHHHhccc-ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043923 273 DLGLPGFRVGAIY--SNDD---MVVAAATKMSSF-GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK 346 (469)
Q Consensus 273 ~~g~~GlRiG~li--~~~~---~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 346 (469)
++|++|+|+||++ +++. .+.+.+...... ++++.+.|.++.++|+.. .+++++.++.++++++++.+.|++
T Consensus 246 ~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 322 (406)
T 1xi9_A 246 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNE 322 (406)
T ss_dssp TTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 7651 444444333222 557888999998888543 223677888999999999999998
Q ss_pred c-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 347 A-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 347 ~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
+ ++++.++.+|+|+|++++.... .+..+++..+++++||.+.||..|+..+++++||+++ .+++++++++++|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~-~~~~~i~~~~~~l~ 397 (406)
T 1xi9_A 323 IPGISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAMDRFE 397 (406)
T ss_dssp STTEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHH
T ss_pred CCCCeeecCCeeEEEEEecCccCC----CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-CCHHHHHHHHHHHH
Confidence 8 7888788889999988864110 1234577777767799999999887545679999998 69999999999999
Q ss_pred HHHHhhcc
Q 043923 426 AFVDSITT 433 (469)
Q Consensus 426 ~~l~~~~~ 433 (469)
+++++..+
T Consensus 398 ~~l~~~~~ 405 (406)
T 1xi9_A 398 KFMKERLK 405 (406)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhc
Confidence 99987543
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=378.52 Aligned_cols=356 Identities=16% Similarity=0.223 Sum_probs=273.6
Q ss_pred eeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHH-HhHcCCCCC-CCCCcEEEe
Q 043923 40 IIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFM-SEIRGNKVT-FDTSKIVLT 117 (469)
Q Consensus 40 ~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l-~~~~~~~~~-~~~~~i~~t 117 (469)
+|+|+.|++.++++.+.+.+.+. .....|+++.|..+|++++++++ .++++.++. .++++|++|
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~--------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t 171 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDG--------------ILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAV 171 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHH--------------HHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEE
T ss_pred hhecccCCCCCCChHHHHHHHHh--------------hhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEE
Confidence 79999999988776555544432 12357999989999999988765 444432221 256899999
Q ss_pred CChHHHHHHHHHH-----hcCCCCEEEEccCCCcChHHHHhhh-CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 118 AGATSANETLMFC-----LAEPGEAFLLPTPYYPGFDRDLKWR-TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 118 ~G~~~al~~~~~~-----l~~~gd~Vl~~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
+|+++++..++.+ ++++||.|++++|+|..|...+... .|++++.++++++++|.+|+++++++++. +
T Consensus 172 ~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~ 245 (546)
T 2zy4_A 172 EGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP------A 245 (546)
T ss_dssp EHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST------T
T ss_pred CCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC------C
Confidence 9999999999988 5789999999999999998875432 27999999998777899999999876543 7
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHH--HhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNII--TEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~--~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
+++|+++|||||||.+++.+++++|+++| +++|++||+||+|+++.++ +.++... ..+++++++|
T Consensus 246 ~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~----------~~~~~i~~~S 312 (546)
T 2zy4_A 246 IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAI----------CPENTLLVYS 312 (546)
T ss_dssp EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHH----------CGGGEEEEEE
T ss_pred CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHh----------CCCCEEEEEe
Confidence 99999999999999999999999999999 7899999999999986542 3455544 2368999999
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHH-------------hc-------------------------ccccCcHHHHHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATK-------------MS-------------------------SFGLVSSQTQYL 311 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~-------------~~-------------------------~~~~~s~~~q~~ 311 (469)
|||++|++|+|+||+++++..+.+.+.. .. ....++.+.|.+
T Consensus 313 ~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a 392 (546)
T 2zy4_A 313 FSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQ 392 (546)
T ss_dssp STTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHH
T ss_pred CccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHH
Confidence 9999999999999999976523232210 01 112467777776
Q ss_pred H-----HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccc---cCC-------hhHH
Q 043923 312 L-----SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLR---SNT-------FEAE 376 (469)
Q Consensus 312 ~-----~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~---~~~-------~~~~ 376 (469)
+ .+++.+. ..+.++.++.++++++.+.+.|. .++.+.++++|+|+|++++.... ... ..++
T Consensus 393 ~a~~a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~ 468 (546)
T 2zy4_A 393 MALFSLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSST 468 (546)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCH
Confidence 3 3455543 34578888899999999998886 56666788899999999864210 000 0012
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+++.+++.++||.+.||+.|+. +++++||+++..+++++++++++|+++++++.+
T Consensus 469 ~~~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~ 524 (546)
T 2zy4_A 469 GDMLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADELYA 524 (546)
T ss_dssp HHHHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788999999999986 467999999866899999999999999988876
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=365.51 Aligned_cols=354 Identities=14% Similarity=0.171 Sum_probs=286.8
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCccccccc-ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFREL-ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
.++|||+.|+|+++ ++.+.+++.+... ... ..|++..|..+||+++|+++++.++ +.+++++|+
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~i~ 109 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLR------------EGVASIYPNLDGLPELKQEASRFAKLFVN--IDIPARACV 109 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHH------------HTGGGSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHh------------CCcCcCCCCCCChHHHHHHHHHHHHHhhC--CCCCcccEE
Confidence 47899999999986 4666666665311 123 6799888999999999999998877 446789999
Q ss_pred EeCChHHHHHHHHHHhc--CCCC--EEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 116 LTAGATSANETLMFCLA--EPGE--AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~--~~gd--~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
+|+|+++++..++.+++ ++|| .|+++.|+|..+...+... |++++.++++ +.+|.+|+++++++++. ++
T Consensus 110 ~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~~~~~d~~~l~~~l~~-----~~ 182 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRIL-GQKFESFDLF-EYRGEKLREKLESYLQT-----GQ 182 (437)
T ss_dssp EESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHH-TCCCEEEEGG-GGCTTHHHHHHHHHHTT-----TC
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHc-CCEEEEEeec-CCCCccCHHHHHHHHhc-----CC
Confidence 99999999999999998 9999 9999999999999998887 9999999997 46788899999999832 27
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch-------hhhhhccccccCCcCCeE
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI-------MEILKDRNCENTQVWNRV 264 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~-------~~~~~~~~~~~~~~~~~~ 264 (469)
+++|++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++. .++ ..+.. ..+++
T Consensus 183 ~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~ 252 (437)
T 3g0t_A 183 FCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD--YSHPGEPLYQPSVAN--------YTDNY 252 (437)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC--CCSTTSSCCCCCGGG--------TCSCE
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC--cCcccccchhhccCC--------CCCcE
Confidence 89999999999999999999999999999999999999999998766532 222 23311 35789
Q ss_pred EEEccCccccCCCcceEEEEEecCHHHHHH-----------------HHHhc--ccccCcHHHHHHHHHHhcCchhhHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAA-----------------ATKMS--SFGLVSSQTQYLLSALLSDKKFTQNY 325 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~~~~~~~~-----------------~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~ 325 (469)
++++|+||.+|++|+|+||++++++.+... +.... ..++++.+.+.++.++|.......++
T Consensus 253 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 332 (437)
T 3g0t_A 253 ILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYN 332 (437)
T ss_dssp EEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCC
T ss_pred EEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHH
Confidence 999999999999999999999965443303 33322 23457889999999888764311222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcee-------cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 326 ISENKKRLKQRHRKLVSGLEKAGISCL-------KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 326 ~~~~~~~l~~~~~~l~~~L~~~g~~v~-------~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
+++.+++++++++.+.+.|+++|+++. ++.+++|+|++++. . +..++++.|+ ++||.+.||..|+
T Consensus 333 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~~L~-~~gi~v~~~~~~~ 404 (437)
T 3g0t_A 333 FRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKG-M------DSSKLIEKFV-RYGMCAITLKTTG 404 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETT-C------CHHHHHHHHH-HTTEECEESTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCC-C------CHHHHHHHHH-HcCeEEeeccccC
Confidence 678889999999999999999988887 44788999999872 1 2335677766 5599999999887
Q ss_pred CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 399 CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 399 ~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
...++++||+++..+++++++++++|++++++
T Consensus 405 ~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 405 SKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 65558899999966999999999999998764
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=358.07 Aligned_cols=351 Identities=20% Similarity=0.350 Sum_probs=284.8
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.+.+.++ ++.+.+++ +... .....|++..|..+|++++|+++++.++ +++++++|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~~ 107 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENK------------PEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVLV 107 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTC------------CSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEEE
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 46899999998764 45566666 4211 1134688888899999999999997765 3467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++|+..++.+++++||.|+++.|+|..+...+... |++++.+|.+.+++|.+ ++++++++++ ++++|+
T Consensus 108 ~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v~ 179 (409)
T 2gb3_A 108 TNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGIV 179 (409)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEEE
T ss_pred eCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEEE
Confidence 999999999999999999999999999999999888887 99999999875446665 7888877754 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++|+||||.++|.+++++|+++|++||++||+||+|+++.+++. ..+. + +. ..+++++++|+||++|+
T Consensus 180 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~--~-~~-------~~~~~i~~~s~sK~~g~ 248 (409)
T 2gb3_A 180 LSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASA--L-SI-------ESDKVVVIDSVSKKFSA 248 (409)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCG--G-GS-------CCTTEEEEEESTTTTTC
T ss_pred ECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCc--c-cc-------CCCCEEEEecchhccCC
Confidence 999999999999999999999999999999999999998766542 2333 1 21 23678999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce-ecC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC-LKS 354 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v-~~~ 354 (469)
+|+|+||++++++.+.+.+......+ +.+.+.|.++.++|+.. .+++++.++.++++++++.+.|+++|+++ ..+
T Consensus 249 ~G~r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 325 (409)
T 2gb3_A 249 CGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKRFTKP 325 (409)
T ss_dssp GGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC
T ss_pred ccceEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCC
Confidence 99999999997734545444443333 57889999998898653 45678888999999999999999888888 778
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHh-----CCeEEeCCCCCCC---CCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYD-----VKLNISPGSSCHC---TEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~-----~GI~v~pg~~f~~---~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
.+|+|+|++++. .+..+++..++++ +||.+.||..|+. ..++++||+++ .+++++++++++|++
T Consensus 326 ~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~-~~~e~i~~~~~~l~~ 397 (409)
T 2gb3_A 326 SGAFYITAELPV-------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLME 397 (409)
T ss_dssp SBSSEEEEECSS-------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHH
T ss_pred CeeEEEEEEeCC-------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-CCHHHHHHHHHHHHH
Confidence 888999999871 1233577777765 5999999988864 24679999999 699999999999999
Q ss_pred HHHhhcc
Q 043923 427 FVDSITT 433 (469)
Q Consensus 427 ~l~~~~~ 433 (469)
++++.++
T Consensus 398 ~l~~~~~ 404 (409)
T 2gb3_A 398 GLKMFCS 404 (409)
T ss_dssp HHHHHHC
T ss_pred HHHHhhh
Confidence 9987755
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=347.18 Aligned_cols=336 Identities=17% Similarity=0.225 Sum_probs=278.1
Q ss_pred CCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 36 NPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
...++|||+.|+|+++ ++.+.+++.+. +.....|+. .+..+|++++|++++ +++++|
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i 71 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDA-------------VVKANRYAK-NEILMLGNKLAAHHQ--------VEAPSI 71 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHT-------------GGGTTSCCH-HHHHHHHHHHHHHTT--------SCGGGE
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHH-------------HhhCcCCCC-CchHHHHHHHHHHhC--------CChHHE
Confidence 3567899999999985 56777777764 233556754 478999999999985 678999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||+|+++.|+|..+...+... |++++.+|.+. ++.+|++++++++++ .+++++
T Consensus 72 ~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~----~~~~~~ 144 (354)
T 3ly1_A 72 LLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIA-GMKVTKVKMLD--NWAFDIEGLKAAVAA----YSGPSI 144 (354)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECCCT--TSCCCHHHHHHHHHT----CSSCEE
T ss_pred EEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHHHhcc----CCCCCE
Confidence 99999999999999999999999999999999999888887 99999999874 578999999999872 128999
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcC-CeEEEEccCccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW-NRVHIVYSLSKD 273 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~i~i~S~SK~ 273 (469)
|++++|+||||.+++.+++++|+++| +||+++|+||+|+++.+++.. .+.....+ .. +++++++|+||+
T Consensus 145 v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~-~~~~~~~~--------~~~~~~i~~~s~sK~ 214 (354)
T 3ly1_A 145 VYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRF-RSISPMIT--------QGAENIILLKTFSKI 214 (354)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTC-CCSHHHHH--------TTCSSEEEEEESSST
T ss_pred EEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhcccccc-CCHHHHhh--------hcCCCEEEEeeChhh
Confidence 99999999999999999999999999 899999999999987665432 34444433 33 788999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
+|++|+|+||++++ +.+.+.+......++++++.+.++.++|.+. +++++.+++++++++++.+.|+++|+++.+
T Consensus 215 ~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 289 (354)
T 3ly1_A 215 HAMAGMRVGYAVAH-PTVIALMGRYVAGEKINFSGVDAALASMNDS----AFITYSKKSNDVSRQILLKALEDLKLPYLP 289 (354)
T ss_dssp TCCGGGCCEEEECC-HHHHHHHGGGTTCSCCCHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred ccChhhhheeeecC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCeECC
Confidence 99999999999994 5556666666555678999999999999865 457888899999999999999998988876
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+. |+|+|++++. +..++...|. ++||.+. |..++ .++++||+++ +++++++++++|++++++
T Consensus 290 ~~-~~~~~~~~~~--------~~~~~~~~l~-~~gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 290 SE-GNFVFHQLVV--------PLKDYQTHMA-DAGVLIG-RAFPP--ADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CC-SSEEEEECSS--------CHHHHHHHHH-HTTEECC-CCCTT--CTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred CC-ceEEEEECCC--------CHHHHHHHHH-HCCEEEe-ecCCC--CCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 55 4789999874 1235666665 6799999 76553 5789999997 799999999999999875
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=364.62 Aligned_cols=350 Identities=17% Similarity=0.261 Sum_probs=276.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|++|.+.++ ++.+.+++.+..... ........|++..|..+|++++|+++.+. +.+++++|+
T Consensus 55 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------~~~~~~~~y~~~~g~~~l~~~ia~~~~~~----~~~~~~~i~ 123 (432)
T 3ei9_A 55 DAQVISLGIGDTTEPIPEVITSAMAKKAHEL-------STIEGYSGYGAEQGAKPLRAAIAKTFYGG----LGIGDDDVF 123 (432)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHHHHHT-------TSTTTCCCCCCTTCCHHHHHHHHHHHHTT----TTCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhcc-------cccCCccCCCCCCCCHHHHHHHHHHHHcc----CCCCcceEE
Confidence 347899999998875 466666665531100 00023357888889999999999999742 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCCcccCHHHHHHHHH
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNGFQITETAIEEAYQ 183 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~d~~~l~~~i~ 183 (469)
+|+|+++++..+ ..++++||.|+++.|+|.++...+... |. +++.++++.++++..|++.
T Consensus 124 ~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 195 (432)
T 3ei9_A 124 VSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------ 195 (432)
T ss_dssp EESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEECCGGGTTSCCGGG------
T ss_pred ECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEeccCcccCCcCChhh------
Confidence 999999999975 677799999999999999998888776 63 6788888765566666443
Q ss_pred HHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCe
Q 043923 184 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263 (469)
Q Consensus 184 ~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (469)
.+++++|++++||||||.+++.+++++|+++|++||++||+||+|+++.+++.. .++..+.. ..++
T Consensus 196 -----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~--------~~~~ 261 (432)
T 3ei9_A 196 -----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP-RSIFEIPG--------AEEV 261 (432)
T ss_dssp -----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCC-SSGGGSTT--------GGGT
T ss_pred -----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCC-CChhhcCC--------CCCe
Confidence 137899999999999999999999999999999999999999999987666432 34444421 3468
Q ss_pred EEEEccCccccCCCcceEEEEEecCHH-------HHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Q 043923 264 VHIVYSLSKDLGLPGFRVGAIYSNDDM-------VVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLK 334 (469)
Q Consensus 264 ~i~i~S~SK~~g~~GlRiG~li~~~~~-------~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~ 334 (469)
+++++|+||+||++|+|+||++++++. +...+.... .+..+++++|.++.+++.+.. .+++++.+++++
T Consensus 262 ~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~ 339 (432)
T 3ei9_A 262 AMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHKVIGFYK 339 (432)
T ss_dssp EEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHHHHHHHH
T ss_pred EEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHH
Confidence 899999999999999999999997765 134443332 234478899999888887533 356888999999
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCH
Q 043923 335 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 414 (469)
Q Consensus 335 ~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~ 414 (469)
++++++.+.|+++|+++.++.+++|+|++++. .+..+++..+++++||.+.||..|++.+++++||+++. ++
T Consensus 340 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~ 411 (432)
T 3ei9_A 340 ENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPN-------QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HR 411 (432)
T ss_dssp HHHHHHHHHHHHTTCCEEECSSSSEEEEECTT-------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CH
T ss_pred HHHHHHHHHHHHCCceecCCCcceEEEEECCC-------CCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CH
Confidence 99999999999999999888788999999983 12346778888888999999999987678899999974 99
Q ss_pred HHHHHHHHHHHHHHH
Q 043923 415 DTLKLSMQRLKAFVD 429 (469)
Q Consensus 415 e~i~~~l~~L~~~l~ 429 (469)
+++++++++|++--+
T Consensus 412 e~l~~~l~rl~~~~~ 426 (432)
T 3ei9_A 412 ENILEACRRFKQLYK 426 (432)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999886443
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=354.14 Aligned_cols=338 Identities=20% Similarity=0.360 Sum_probs=275.4
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|+|+.+.++++ ++.+.+++.+... .....|++..|..+|++++|+++++.++ +++++++|+
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 93 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLK------------EGKTHYTDSRGILELREKISELYKDKYK--ADIIPDNII 93 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHSS--CCCCGGGEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHH------------cCccCCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 346899999999874 4556666654210 1134688878899999999999998766 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|++++|+|..+...+... |.+++.+| +|++++++++++ ++++|
T Consensus 94 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~--------~d~~~l~~~l~~------~~~~v 158 (370)
T 2z61_A 94 ITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFL-GAKPVFCD--------FTVESLEEALSD------KTKAI 158 (370)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEEC--------SSHHHHHHHCCS------SEEEE
T ss_pred ECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeC--------CCHHHHHHhccc------CceEE
Confidence 9999999999999999999999999999999999888877 99999887 478889888754 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+ |+++|++||+++|+||+|.++.+++. ..++..+.. ..+++++++|+||++|
T Consensus 159 ~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~--------~~~~~i~~~s~sK~~~ 225 (370)
T 2z61_A 159 IINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDE--------NLEKTILINGFSKLYA 225 (370)
T ss_dssp EEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCT--------TCSSEEEEEESTTTTT
T ss_pred EEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccC--------CCCcEEEEecChhccC
Confidence 9999999999999977 88999999999999999998766553 344444411 3478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcC-chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSD-KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
++|+|+||+++++ .+.+.+..... .++++++.|.++.++|+. . .+++++.++.++++++++.+.|+++|+++.
T Consensus 226 ~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 301 (370)
T 2z61_A 226 MTGWRIGYVISND-EIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDFGWEVN 301 (370)
T ss_dssp CGGGCCEEEECCH-HHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCBCC
T ss_pred CccceEEEEEECH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence 9999999999965 44444443332 235788899988888865 2 456788889999999999999999898888
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
++.+|+|+|++++. +..+++..+++++||.+.||..|+..+++++||+++ .+++++++++++|+++++
T Consensus 302 ~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~-~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 302 NPIGAYYVFPNIGE--------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA-NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp CCCBTTEECCBCSS--------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC-SCHHHHHHHHHHHHHHHC
T ss_pred CCCcceEEEEecCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHh
Confidence 88889999999874 123577777756799999999887544679999999 599999999999999875
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=358.49 Aligned_cols=354 Identities=15% Similarity=0.216 Sum_probs=293.6
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|||+++.+.++ ++.+.+++.+... .....|++. ..++++++++++.+.++ +++++++|+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~l~~~l~~~~g--~~~~~~~v~ 123 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGR------------EHIFGYNYF--NDDLYQAVIDWERKEHD--YAVVKEDIL 123 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHH------------HCCSSCBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999988885 4667777765311 123456654 38999999999998877 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+|+++|+..++.+++++||.|+++.|+|.++...+... |.+++.+|++ .+++|.+|++++++++++ +++++
T Consensus 124 ~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~le~~i~~-----~~~~~ 197 (421)
T 3l8a_A 124 FIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLN-DHRLVENSLQIINGRFEIDFEQLEKDIID-----NNVKI 197 (421)
T ss_dssp EESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHT-TEEEEEEECEEETTEEECCHHHHHHHHHH-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHC-CCEEEeccccccCCCeeeCHHHHHHHhhc-----cCCeE
Confidence 9999999999999999999999999999999999888877 9999999986 567788999999999973 28999
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+.+..+.++..+.++ ..++++++.|+||++
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-------~~~~~i~~~s~sK~~ 270 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDAS-------YKDFTIILSSATKTF 270 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTT-------GGGTEEEEECSHHHH
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCch-------hcCcEEEEEeChhhc
Confidence 9999999999999999999999999999999999999999987777655666555331 247889999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhc---ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMS---SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS 350 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~ 350 (469)
|++|+|+||++++++.+.+.+.... .+...+++++.++.+++... .+++++.+++++++++++.+.|+++ +++
T Consensus 271 g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~i~ 347 (421)
T 3l8a_A 271 NIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEGNIKLVIKELEAKTKIK 347 (421)
T ss_dssp TCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSCE
T ss_pred cCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 9999999999997566666554432 23357888888888888742 5668888999999999999999986 899
Q ss_pred eecCCceEEEEEecccc-cccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 351 CLKSNAGLFCWVDMRHL-LRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~-~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+..+.+++++|++++.. .. ..+++..+++++||.+.||..|+..+++++||+++ .+++++++++++|+++++
T Consensus 348 ~~~~~~~~~~~v~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 348 VMEPEGTYLVWLDFSAYAIA------QPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EECCSBSSEEEEECGGGTCC------TTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHHC-
T ss_pred EeCCCeeEEEEEeccccCCC------HHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 99999999999999752 12 12577777777899999999998767889999999 599999999999999875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=349.31 Aligned_cols=321 Identities=18% Similarity=0.297 Sum_probs=261.9
Q ss_pred CCeeeeeccccccChH-HHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLSFD-LLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|||+.|+|+++++ .+ . +.....|++. +..+||+++|++++ +++++|++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v-----a--------------~~~~~~Y~~~-~~~~lr~~la~~~~--------~~~~~v~~ 80 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVEFQL-----T--------------QQTLNRYPEC-QPKAVIENYAQYAG--------VKPEQVLV 80 (356)
T ss_dssp TCSEECSSCCCSSCCCCCC-----C--------------CCCTTSCCCS-SCHHHHHHHHHHHT--------SCGGGEEE
T ss_pred CceEEeeCCCCCCCCCHhH-----h--------------hhhhccCCCc-cHHHHHHHHHHHhC--------CChHHEEE
Confidence 4789999999999753 22 1 1234679876 47999999999995 67899999
Q ss_pred eCChHHHHHHHHHHhcCCC-CEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPG-EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~g-d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
|+|+++++..++.+++++| |+|+++.|+|..+...+... |++++.+|++ .+|.+|+++++++++ ++++|
T Consensus 81 ~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~-------~~~~v 150 (356)
T 1fg7_A 81 SRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTL--DNWQLDLQGISDKLD-------GVKVV 150 (356)
T ss_dssp ESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCC--TTSCCCHHHHHTSCT-------TEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeeCC--CCCCCCHHHHHHHhc-------CCCEE
Confidence 9999999999999999999 99999999999999988887 9999999987 457789999887663 57899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++||||||.+++.+++++|+++|+ +|+++|+||+|.++. . ..++..+.. ..+++++++|+||+||
T Consensus 151 ~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~--~--~~~~~~~~~--------~~~~~i~~~s~sK~~g 217 (356)
T 1fg7_A 151 YVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFC--P--QASLAGWLA--------EYPHLAILRTLSKAFA 217 (356)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGS--G--GGCSGGGTT--------TCTTEEEEEESSSTTC
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhc--C--CCcHHHHHh--------hCCCEEEEecchHhhc
Confidence 99999999999999999999999999 999999999999753 1 123333322 3478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC--Cceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG--ISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g--~~v~~ 353 (469)
++|+|+||++++ +.+.+.+......+++++++|.++.++|.+.++ +++++.+++++++++++.+.|++++ +.+.
T Consensus 218 ~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~- 293 (356)
T 1fg7_A 218 LAGLRCGFTLAN-EEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVF- 293 (356)
T ss_dssp CGGGCCEEEEEC-HHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-
T ss_pred CchhhhEEEEeC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEEC-
Confidence 999999999995 455555655555556889999999999986443 2478888899999999999999886 3433
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC-CCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP-GSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p-g~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+.+|+|+|++++. ..++++.| .++||.++| |..|+. ++++||+++ +++++++++++|+++
T Consensus 294 ~~~~~~~~~~~~~---------~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~--~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 294 DSETNYILARFKA---------SSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG--TREESQRVIDALRAE 354 (356)
T ss_dssp CCSSSEEEEEETT---------HHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCC---------HHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 4567899999861 22566666 577999999 887764 469999998 689999999998753
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-43 Score=346.66 Aligned_cols=330 Identities=17% Similarity=0.240 Sum_probs=273.3
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|||+.|+|+++ ++.+.+++.+.. .....|+. .+..+||+++|++++ +++++|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~lr~~la~~~~--------~~~~~v~~ 89 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSS-------------VETEIYPD-GWASSLRKEVADFYQ--------LEEEELIF 89 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCB-------------SCCCBC-----CHHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCC-cchHHHHHHHHHHhC--------CChhhEEE
Confidence 47899999999985 577888877641 33456764 478999999999996 67899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||+|+++.|+|..+...+... |++++.+|.++ ++.+|++++++++++ ++++|+
T Consensus 90 ~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~ 160 (363)
T 3ffh_A 90 TAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIE-GAEVREIPLLQ--DGEHDLEGMLNAIDE------KTTIVW 160 (363)
T ss_dssp ESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHH-TCEEEEEECCT--TSCCCHHHHHHHCCT------TEEEEE
T ss_pred eCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCCC--CCCcCHHHHHHhccc------CCCEEE
Confidence 999999999999999999999999999999999988888 99999999874 577999999998864 899999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
+++|+||||.+++.+++.++++.|++ |+++|+||+|+++.+ +. ..+...... ..+++++++|+||.+|+
T Consensus 161 ~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~-~~~~~~~~~--------~~~~~i~~~s~sK~~g~ 229 (363)
T 3ffh_A 161 ICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ-PEKHEKLVR--------TYKNLIITRTFSKIYGL 229 (363)
T ss_dssp EESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC-CCCCGGGGG--------TCTTEEEEEESSSTTCC
T ss_pred EeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc-ccCHHHHhh--------cCCCEEEEeechhhhcC
Confidence 99999999999999999999998887 999999999998765 32 233333433 45789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~g~~v~~~~ 355 (469)
+|+|+||+++ ++.+.+.+......+.++.+.+.++.++|.+. +++++.+++++++++++.+.|++ .|+++.++.
T Consensus 230 ~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~ 304 (363)
T 3ffh_A 230 ASARVGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQ----AFIGECRTSNANGIKQYEAFAKRFEKVKLYPAN 304 (363)
T ss_dssp SSCCCEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCC
T ss_pred chhceeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHhhCCCceECCCC
Confidence 9999999999 55555656655556668999999999999864 45788889999999999999999 689887665
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
+ +|+|++++. +..++.+.+. ++||.+.||..|+. ++++|++++ +++++++++++|++++
T Consensus 305 ~-~~~~~~~~~--------~~~~~~~~l~-~~gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 305 G-NFVLIDLGI--------EAGTIFSYLE-KNGYITRSGAALGF--PTAVRITIG--KEEDNSAVIALLEKLL 363 (363)
T ss_dssp S-SEEEEECSS--------CHHHHHHHHH-HTTEECEETTTTTC--TTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred C-eEEEEECCC--------CHHHHHHHHH-HCCeEEEeCccCCC--CCeEEEECC--CHHHHHHHHHHHHHhC
Confidence 5 688999874 1235666665 56999999998865 789999998 8999999999998763
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=353.20 Aligned_cols=342 Identities=22% Similarity=0.358 Sum_probs=277.1
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|||+.|.++++ ++.+.+++.+... ....|++..|..+|+++++++++ +++++|++
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~~--------~~~~~v~~ 83 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALG-------------RQDQYAPPAGLPALREALAEEFA--------VEPESVVV 83 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTT-------------TSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHH-------------HhcCCCCCCCCHHHHHHHHHhcC--------CChhhEEE
Confidence 36799999998875 5667777665311 13468887789999999999975 57889999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc--CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT--SLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
|+|+++++..++.+++++||+|+++.|+|..+...++.. |++++.+|.+ . .++.+|++++++++++ ++++
T Consensus 84 ~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~------~~~~ 155 (381)
T 1v2d_A 84 TSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTP-EGFRLDLSALEKALTP------RTRA 155 (381)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEET-TEEECCHHHHHTTCCT------TEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCCCC-ccCCcCHHHHHHhcCc------CCEE
Confidence 999999999999999999999999999999999888877 9999999986 3 2477899999988753 7899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.++|.+++++|+++|++||+++|+||+|.++.+ +....++..+ ..++++++.|+||++
T Consensus 156 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~----------~~~~~~~~~s~sK~~ 224 (381)
T 1v2d_A 156 LLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF----------APERTFTVGSAGKRL 224 (381)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH----------CTTTEEEEEEHHHHT
T ss_pred EEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh----------cCCCEEEEeechhhc
Confidence 99999999999999999999999999999999999999998766 4333455544 126889999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~ 352 (469)
|++|+|+||++++++.+ +.+.... ..++.+.+.|.++.++|....+ .+++++.+++++++++++.+.|++.|+++.
T Consensus 225 ~~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 302 (381)
T 1v2d_A 225 EATGYRVGWIVGPKEFM-PRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVY 302 (381)
T ss_dssp TCGGGCCEEEECCTTTH-HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcccceEEEEeCHHHH-HHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHCCCEec
Confidence 99999999999965544 3333322 2345788888888888874422 345778889999999999999999999998
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++.+|+|+|++++.. + +..+++++||.+.||..|+. ..++++||+++. +++++++++++|++++++
T Consensus 303 ~~~~~~~~~~~~~~~----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 303 VPEGTYFLMAELPGW----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNS 370 (381)
T ss_dssp CCSBSSEEEEECTTC----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC--
T ss_pred CCCcceEEEEecChH----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 888889999998742 1 44566788999999998875 346799999996 999999999999999987
Q ss_pred hcc
Q 043923 431 ITT 433 (469)
Q Consensus 431 ~~~ 433 (469)
.++
T Consensus 371 ~r~ 373 (381)
T 1v2d_A 371 PRE 373 (381)
T ss_dssp ---
T ss_pred ccc
Confidence 766
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-44 Score=358.75 Aligned_cols=345 Identities=15% Similarity=0.189 Sum_probs=268.6
Q ss_pred CCeeeeecccc--ccCh----HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLAEN--QLSF----DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~~n--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
+++|+|+.|.+ ..++ +.+.+++.+... ......|++..|.++||+++|+++++.++ ..+++
T Consensus 28 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~-----------~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~ 94 (401)
T 7aat_A 28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAA-----------KKMDKEYLPIAGLADFTRASAELALGENS--EAFKS 94 (401)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceeeeeeeEECCCCCEechHHHHHHHHHhcc-----------cccccCCCCCCCCHHHHHHHHHHhcCCCc--ccccc
Confidence 35899999985 2222 235554443210 01345798888999999999999986655 33568
Q ss_pred CcEEE--eCChHHHHHHHHHHhc---CCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 112 SKIVL--TAGATSANETLMFCLA---EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 112 ~~i~~--t~G~~~al~~~~~~l~---~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
++|++ |+|+++++..++.++. ++||.|++++|+|..+...++.. |.+++.+|++.+.++.+|++.+++.+++.
T Consensus 95 ~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 172 (401)
T 7aat_A 95 GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-GLQLQAYRYYDPKTCSLDFTGAMEDISKI- 172 (401)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTS-
T ss_pred CceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-CCeeEeeeeeccccCccCHHHHHHHHHhC-
Confidence 99987 9999999998887664 89999999999999999999887 99999999865557889999888887641
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC--CccchhhhhhccccccCCcCCeE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..+++
T Consensus 173 --~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~--------~~~~~ 242 (401)
T 7aat_A 173 --PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE--------QGIDV 242 (401)
T ss_dssp --CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH--------TTCCC
T ss_pred --CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh--------cCCcE
Confidence 34788999999999999999999999999999999999999999998766542 1223333322 45789
Q ss_pred EEEccCccccCCCcceEEEEEec--CHH----HHHHHHHhc--ccccCcHHHHHHHHHHhcCchhh---HHHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSN--DDM----VVAAATKMS--SFGLVSSQTQYLLSALLSDKKFT---QNYISENKKRL 333 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~--~~~----~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l 333 (469)
++++|+||+||++|+|+||++++ ++. +...+.... ...+++...|.++..++.+..+. .+++++.++++
T Consensus 243 i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 322 (401)
T 7aat_A 243 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRI 322 (401)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999872 333 223232222 22345677888888888775431 45577888999
Q ss_pred HHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe
Q 043923 334 KQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 409 (469)
Q Consensus 334 ~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~ 409 (469)
+++++++.+.|++++ +++.++++|+|+|++++. +.+..+++++||.+.|+ +|+++
T Consensus 323 ~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gi~v~~~----------~Ris~ 381 (401)
T 7aat_A 323 ISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRISV 381 (401)
T ss_dssp HHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEG
T ss_pred HHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCH-----------HHHHHHHHhCCEeccCC----------CeEEe
Confidence 999999999999885 777788999999987752 35577778889999764 69999
Q ss_pred ecCCHHHHHHHHHHHHHHH
Q 043923 410 ANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 410 ~~~~~e~i~~~l~~L~~~l 428 (469)
+..+++++++++++|++++
T Consensus 382 ~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 382 AGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp GGCCTTTHHHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHh
Confidence 8777778999999999876
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=360.76 Aligned_cols=345 Identities=14% Similarity=0.194 Sum_probs=271.6
Q ss_pred CCeeeeecc---ccccC---hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLA---ENQLS---FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~---~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
.++|||+.| ++..+ ++.+.+++.+.... .....|++..|.++||+++++++....+ ..+++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 115 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA-----------GLPRGYLPIDGIAAYDASVQKLLLGDDS--PLIAA 115 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc-----------CCCCCCCCCCCcHHHHHHHHHHhcCCCc--ccccc
Confidence 378999999 34432 25666666553110 1245799889999999999999975432 11257
Q ss_pred C--cEEEeCChHHHHHHHH--HHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 112 S--KIVLTAGATSANETLM--FCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 112 ~--~i~~t~G~~~al~~~~--~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
+ +|++|+|+++|+..++ .+++++||+|++++|+|.++...+... |.+++.+|+..+.++.+|++.+++.+++.
T Consensus 116 ~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 192 (420)
T 4f4e_A 116 GRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMA-GFEVVAYPYYDAKTNGVNFDGMLAALNGY-- 192 (420)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHT-TCCEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred CceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEeeeeccccCccCHHHHHHHHHhC--
Confidence 7 8999999999999994 466799999999999999999988887 99999999843456889999999998631
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC-CccchhhhhhccccccCCcCCeEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..+++++
T Consensus 193 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--------~~~~~i~ 263 (420)
T 4f4e_A 193 -EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA--------ANLNVFV 263 (420)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH--------TTCCEEE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh--------cCCCEEE
Confidence 23788999999999999999999999999999999999999999999877642 2344444433 4578999
Q ss_pred EccCccccCCCcceEEEEEe--cCHHHHH-H---HHHh--cccccCcHHHHHHHHHHhcCchh---hHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYS--NDDMVVA-A---ATKM--SSFGLVSSQTQYLLSALLSDKKF---TQNYISENKKRLKQ 335 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~--~~~~~~~-~---~~~~--~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~l~~ 335 (469)
++|+||+||++|+|+||+++ ++..+.. . +... ..+..++.+.|.++..++.+..+ ..+++++.++++++
T Consensus 264 ~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 343 (420)
T 4f4e_A 264 SSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRA 343 (420)
T ss_dssp EEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 3444322 1 2221 23344678899999888888642 15668889999999
Q ss_pred HHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec
Q 043923 336 RHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 411 (469)
Q Consensus 336 ~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~ 411 (469)
+++.+.+.|+++ ++++..+++|+|+|+.++. +.+..+++++||.+.|+ .|++++.
T Consensus 344 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gI~v~~~----------~Ris~~~ 402 (420)
T 4f4e_A 344 MRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTS-----------AQVDRLREEFGIYAVST----------GRICVAA 402 (420)
T ss_dssp HHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------SEEEGGG
T ss_pred HHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEEec
Confidence 999999999987 7888888999999988752 34566777889999985 2999987
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043923 412 MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 412 ~~~e~i~~~l~~L~~~l 428 (469)
++++++++++++|++++
T Consensus 403 ~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 403 LNTRNLDVVANAIAAVL 419 (420)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 78888999999999886
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=348.86 Aligned_cols=360 Identities=18% Similarity=0.274 Sum_probs=284.4
Q ss_pred Ceeeeecccccc---ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 39 GIIQMGLAENQL---SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 39 ~~i~L~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
++|||+.+.+.. +++.+.+++.+.... . ..... |++..|..+|++++|+++.+.+| +++++++|+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~------~---~~~~~-y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 102 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEK------E---PKSVM-YTPANGIPELREELAAFLKKYDH--LEVSPENIV 102 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHH------C---GGGGS-CCCTTCCHHHHHHHHHHHHHHSC--CCCCGGGEE
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhh------c---ccccc-CCCCCCCHHHHHHHHHHHHHhcC--CCCCcceEE
Confidence 679999886543 556666666553110 0 01234 88888999999999999987665 345789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+..++.+++++||.|+++.|+|..+...+... |++++.+|.+++ .+|+++++++++.....++++++|
T Consensus 103 ~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v 178 (407)
T 2zc0_A 103 ITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQL-GAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLI 178 (407)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEE
Confidence 9999999999999999999999999999999998888877 999999998753 289999999887322122367887
Q ss_pred -EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 196 -LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 196 -vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++....++..+. ..+++++++|+||++
T Consensus 179 ~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~s~sK~~ 249 (407)
T 2zc0_A 179 YTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD---------NEGRVIVAGTLSKVL 249 (407)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC---------SSCCEEEEEESTTTT
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC---------CCCCEEEEccccccc
Confidence 5789999999999999999999999999999999999998777655444554441 236889999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhH-HHHHHHHHHHHHHHHHHHHHHHhc--CC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQ-NYISENKKRLKQRHRKLVSGLEKA--GI 349 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~l~~~L~~~--g~ 349 (469)
| +|+|+||++++ +.+.+.+...... ...+++.|.++.++++...+ . +++++.+++++++++++.+.|++. ++
T Consensus 250 ~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (407)
T 2zc0_A 250 G-TGFRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKRDIMLKALENHLPNA 326 (407)
T ss_dssp C-TTSCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred C-CCcceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9 99999999996 4455544443322 23678899999999987643 4 567788889999999999999874 67
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
++..+.+|+|+|++++... +..++++.+++++||.+.||..|+.. .++++||+++..+++++++++++|+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 400 (407)
T 2zc0_A 327 EFTKPIAGMFVMFFLPEGA------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKL 400 (407)
T ss_dssp CBCCCSBSSEEEEECSTTC------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHH
T ss_pred EEecCCCcEEEEEEcCCCC------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 7777788899999997422 23357777776669999999988653 467999999865799999999999999
Q ss_pred HHhhc
Q 043923 428 VDSIT 432 (469)
Q Consensus 428 l~~~~ 432 (469)
+++..
T Consensus 401 l~~~~ 405 (407)
T 2zc0_A 401 YKEKF 405 (407)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 97654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=358.73 Aligned_cols=354 Identities=16% Similarity=0.147 Sum_probs=270.1
Q ss_pred Ceeeeeccccc---cCh-HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 39 GIIQMGLAENQ---LSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 39 ~~i~L~~~~n~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
++|+|+.|+|+ +++ +.+.+++.+.. . . ........|++..|.++||+++|++++ +++++|
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~---~-~----~~~~~~~~Y~~~~G~~~lr~~ia~~~~--------~~~~~i 96 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDF---R-T----KDGVDCRNYGGLLGIADIRELWAEALG--------LPADLV 96 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCC---B-C----TTCCBTTSSCCSSCCHHHHHHHHHHHT--------CCGGGE
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHH---h-h----ccchhhhCCCCCCCCHHHHHHHHHHhC--------CChhHE
Confidence 47999999997 443 33444333210 0 0 000235689999999999999999995 678999
Q ss_pred EEeCChHHHH--HHHHHHhcCC------------CCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHH
Q 043923 115 VLTAGATSAN--ETLMFCLAEP------------GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180 (469)
Q Consensus 115 ~~t~G~~~al--~~~~~~l~~~------------gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 180 (469)
++|+|+++++ .+++.++..+ +|+|+++.|+|..|...++.. |++++.+|++.+ .+|++++++
T Consensus 97 ~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~ 172 (422)
T 3d6k_A 97 VAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF-GFEMINVPMTDE---GPDMGVVRE 172 (422)
T ss_dssp EECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH-TCEEEEEEEETT---EECHHHHHH
T ss_pred EEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHc-CCEEEecCCCCC---CCCHHHHHH
Confidence 9999999997 6777777655 457999999999999998888 999999999753 289999998
Q ss_pred HHHHHHhcCCceeEEE-EecCCCCCCCCCCHHHHHHHHHHHH-hcCeEEEEeccccccccC--CCCccchhhhhhccccc
Q 043923 181 AYQLAQKRHLKVKGVL-VTNPSNPLGTTMSRNELNLLVNIIT-EKNIHLISDEIYSGTVFS--SPGFVSIMEILKDRNCE 256 (469)
Q Consensus 181 ~i~~~~~~~~~~~~vv-l~~P~NPtG~~~s~e~l~~l~~~~~-~~~~~iI~Deay~~~~~~--~~~~~s~~~~~~~~~~~ 256 (469)
++++ .++++|+ +++||||||.++|.+++++|+++|+ +||++||+||+|.++.|. +..+.++.++....
T Consensus 173 ~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~--- 244 (422)
T 3d6k_A 173 LVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA--- 244 (422)
T ss_dssp HHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT---
T ss_pred HHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc---
Confidence 8853 2688887 7899999999999999999999999 999999999999853332 22334554432100
Q ss_pred cCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcC-chhhHHHHHHHHHHH
Q 043923 257 NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSD-KKFTQNYISENKKRL 333 (469)
Q Consensus 257 ~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~l 333 (469)
+..+++++++||||+ ++||+|+||+++++. +.+.+..... .++++.+.|.++.++|++ +.+ .+++++.++.+
T Consensus 245 --~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~ 319 (422)
T 3d6k_A 245 --GNPNRFWFMSSTSKI-THAGSGVSFFASSKE-NIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGL-KAHMLKHAASL 319 (422)
T ss_dssp --TCTTCEEEEEESTTT-SCTTSSCEEEECCHH-HHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHH
T ss_pred --CCCCcEEEEcChhhh-cCcccceEEEEeCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchH-HHHHHHHHHHH
Confidence 144789999999999 679999999999644 4444444332 245789999999999998 444 77888889999
Q ss_pred HHHHHHHHHHHHh----cC-CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC-CCCCCC---CCCCe
Q 043923 334 KQRHRKLVSGLEK----AG-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP-GSSCHC---TEPGW 404 (469)
Q Consensus 334 ~~~~~~l~~~L~~----~g-~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p-g~~f~~---~~~~~ 404 (469)
+++++.+.+.|.+ .| +.+..+.+|+|+|++++.. +..++ ..++.++||.++| |..|.. ..+++
T Consensus 320 ~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~~~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~~ 391 (422)
T 3d6k_A 320 APKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-------TASRV-VELAKEAGIALTGAGSSFPLHNDPNNEN 391 (422)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-------CHHHH-HHHHHHTTEECCCTTTTSGGGCCTTSCE
T ss_pred HHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-------CHHHH-HHHHHHCCeEEEcCccccCCCCCCCCCe
Confidence 9999988888865 33 5667788899999999752 12234 4456688999999 555641 23679
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 405 FRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 405 iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+||+++..+++++++++++|++++++..+
T Consensus 392 iRis~~~~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 392 IRLAPSLPPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999855899999999999999887643
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=342.41 Aligned_cols=340 Identities=18% Similarity=0.272 Sum_probs=278.1
Q ss_pred CCCCCCCCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCC
Q 043923 29 NPYDEVQNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKV 107 (469)
Q Consensus 29 ~~~~~~~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~ 107 (469)
.+|.++. +.++|||+.|+|+++ ++.+.+++.+.... .....|++ .+..+|++++|++++
T Consensus 22 ~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~-~~~~~l~~~la~~~g------- 81 (367)
T 3euc_A 22 GAYHVPD-SHGLVKLDAMENPYRLPPALRSELAARLGE-----------VALNRYPV-PSSEALRAKLKEVMQ------- 81 (367)
T ss_dssp CCSSCCC-CTTCEECCSSCCCCCCCHHHHHHHHHHHHH-----------HHTTCSCC-CCHHHHHHHHHHHHT-------
T ss_pred CCCCCCC-CCCeeEccCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCC-CcHHHHHHHHHHHhC-------
Confidence 3455554 568899999999985 46676666653110 13567876 478999999999986
Q ss_pred CC-CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 108 TF-DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 108 ~~-~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
+ ++++|++|+|+++++..++.+++++||+|+++.|+|..+...+... |++++.+|++. +|.+|++++++++++.
T Consensus 82 -~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~l~~~- 156 (367)
T 3euc_A 82 -VPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFA-GLEFVGVPLRA--DFTLDRGAMLAAMAEH- 156 (367)
T ss_dssp -CCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTT-TCEEEEEECCT--TSCCCHHHHHHHHHHH-
T ss_pred -CCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHHHhhcc-
Confidence 4 6789999999999999999999999999999999999999888877 99999999874 6779999999999764
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|+++. ...... ... ..+++
T Consensus 157 ----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~--~~~~~~---~~~--------~~~~~ 219 (367)
T 3euc_A 157 ----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA--QESWMS---RLT--------DFGNL 219 (367)
T ss_dssp ----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS--SCCSGG---GGG--------TCTTE
T ss_pred ----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc--ccchHH---HHh--------hCCCE
Confidence 789999999999999999999999999999999 99999999999753 222111 222 44788
Q ss_pred EEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGL 344 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 344 (469)
+++.|+||+ +++|+|+||++++ +.+.+.+......+..+.+.+.++.++|+. .+++++.+++++++++++.+.|
T Consensus 220 i~~~s~sK~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l 293 (367)
T 3euc_A 220 LVMRTVSKL-GLAGIRLGYVAGD-PQWLEQLDKVRPPYNVNVLTEATALFALEH----VAVLDEQAAQLRAERSRVAEGM 293 (367)
T ss_dssp EEEEECCCT-TSCSCCEEEEEEC-HHHHHHHGGGCCSSCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhh-cccccCceeeeeC-HHHHHHHHHhCCCCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 8999999999995 445555655555566889999999999987 3457888889999999999999
Q ss_pred Hhc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHH
Q 043923 345 EKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 423 (469)
Q Consensus 345 ~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~ 423 (469)
+++ |+++.++ +|+|+|++++. ..++.+.+ .++||.++||..|+...++++|++++ +++++++++++
T Consensus 294 ~~~~g~~~~~~-~~~~~~~~~~~---------~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~ 360 (367)
T 3euc_A 294 AAHGGVTVFPS-AANFLLARVPD---------AAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEA 360 (367)
T ss_dssp HTSTTCEECCC-SSSEEEEECSC---------HHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHH
T ss_pred HhCCCcEECCC-CCeEEEEECCC---------HHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHH
Confidence 998 8886554 55789998871 22455554 57799999999887666789999998 89999999999
Q ss_pred HHHHHH
Q 043923 424 LKAFVD 429 (469)
Q Consensus 424 L~~~l~ 429 (469)
|+++++
T Consensus 361 l~~~l~ 366 (367)
T 3euc_A 361 FAASLQ 366 (367)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 998864
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=349.05 Aligned_cols=350 Identities=15% Similarity=0.285 Sum_probs=279.4
Q ss_pred CCeeeeecccccc---ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 38 TGIIQMGLAENQL---SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
.++|||+.+.+.. +++.+.+++.+.... .......|++..|..+|++++|++++ +++++|
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~---------~~~~~~~y~~~~~~~~l~~~la~~~g--------~~~~~v 94 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILRE---------KGEVALQYSPTEGYAPLRAFVAEWIG--------VRPEEV 94 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHH---------HHHHHTSCCCTTCCHHHHHHHHHHHT--------SCGGGE
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHh---------cchhhhCCCCCCCCHHHHHHHHHHhC--------CChhhE
Confidence 3689998875432 556666666553110 00124578887889999999999995 568899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+|.+.+ .+|++++++++++. ++++
T Consensus 95 ~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~---~~d~~~l~~~l~~~-----~~~~ 165 (397)
T 2zyj_A 95 LITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQ-GPRFLTVPAGEE---GPDLDALEEVLKRE-----RPRF 165 (397)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHHC-----CCSC
T ss_pred EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEecCcCCC---CCCHHHHHHHHhhc-----CCeE
Confidence 99999999999999999999999999999999999888877 999999998753 28999999998741 5777
Q ss_pred E-EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCc--CCeEEEEccCc
Q 043923 195 V-LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQV--WNRVHIVYSLS 271 (469)
Q Consensus 195 v-vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~i~i~S~S 271 (469)
| ++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++....++..+.. . .+++++++|+|
T Consensus 166 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~~~~~~i~~~s~s 237 (397)
T 2zyj_A 166 LYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAR--------EAGYPGVIYLGSFS 237 (397)
T ss_dssp EEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHH--------HHTCCCEEEEEEST
T ss_pred EEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCc--------ccCCCeEEEEeccc
Confidence 7 57899999999999999999999999999999999999987776554456555522 1 16789999999
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-- 347 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-- 347 (469)
|++| +|+|+||+++++ .+.+.+..... .+..+++.|.++.++|++..+ +++++.++.++++++.+.+.|++.
T Consensus 238 K~~~-~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~ 313 (397)
T 2zyj_A 238 KVLS-PGLRVAFAVAHP-EALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQAMLHALDREVP 313 (397)
T ss_dssp TTTC-GGGCCEEEECCH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cccc-ccceeEEEecCH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999 999999999964 44444433322 233688999999999987643 567888999999999999999885
Q ss_pred -CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHH
Q 043923 348 -GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRL 424 (469)
Q Consensus 348 -g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l~~L 424 (469)
|+++..+.+|+|+|++++... +..++++.++++ ||.+.||..|+.. .++++||+++..+++++++++++|
T Consensus 314 ~g~~~~~~~~g~~~~~~~~~~~------~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l 386 (397)
T 2zyj_A 314 KEVRYTRPKGGMFVWMELPKGL------SAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386 (397)
T ss_dssp TTSEECCCSBSSEEEEECSTTC------CHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHH
T ss_pred CCeEEccCCccEEEEEEcCCCC------CHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 788877888899999997422 233567777655 9999999988653 467999999866799999999999
Q ss_pred HHHHHhhc
Q 043923 425 KAFVDSIT 432 (469)
Q Consensus 425 ~~~l~~~~ 432 (469)
++++++..
T Consensus 387 ~~~l~~~~ 394 (397)
T 2zyj_A 387 GRALKGLL 394 (397)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=355.12 Aligned_cols=352 Identities=19% Similarity=0.267 Sum_probs=266.7
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.|++.++ ++.+.+++.+...... .......|++..|..+||+++|+++. ++ + +++++|+
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~~~~~y~~~~g~~~lr~~la~~l~--~g--~-~~~~~v~ 99 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLS-------SPTTCRGYGPDFGLPALRQKLSEDFY--RG--F-VDAKEIF 99 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHT-------SSSCCCCCCCTTCCHHHHHHHHHTTS--TT--S-SCGGGEE
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhccc-------ccccccCCCCCCCCHHHHHHHHHHHH--cC--C-CCHHHEE
Confidence 457899999998764 4556666554211000 00124568877899999999999963 22 3 5789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCE-EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVE-IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+|+++++..++.. +.+||.|+++.|+|..+...+... |++ ++.+|++.++++..|++.+ +++++
T Consensus 100 ~~~G~~~al~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~ 166 (400)
T 3asa_A 100 ISDGAKVDLFRLLSF-FGPNQTVAIQDPSYPAYLDIARLT-GAKEIIALPCLQENAFFPEFPED-----------THIDI 166 (400)
T ss_dssp EESCHHHHHHHHHHH-HCSSCEEEEEESCCHHHHHHHHHT-TCSEEEEEECCGGGTTCCCCCTT-----------CCCSE
T ss_pred EccChHHHHHHHHHH-cCCCCEEEECCCCcHHHHHHHHHc-CCcceEecccchhcCcccChhhc-----------cCccE
Confidence 999999999987654 489999999999999999888877 998 9999987555566554321 27889
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.++|.+++++|+++|+++|++||+||+|.++.+++....++..+.. ..+++++++|+||+|
T Consensus 167 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~s~sK~~ 238 (400)
T 3asa_A 167 LCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPD--------ARFCAIEINSFSKPL 238 (400)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTT--------GGGTEEEEEECCGGG
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCC--------CCCceEEEecchhhc
Confidence 999999999999999999999999999999999999999986655432234443311 235789999999999
Q ss_pred CCCcceEEEEEecCHH-------HHHHHHH--hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 275 GLPGFRVGAIYSNDDM-------VVAAATK--MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 275 g~~GlRiG~li~~~~~-------~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
|++|+|+||++++++. +...... ...+++++.+.|.++.++|++. ++++.++.++++++++.+.|+
T Consensus 239 g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l~~~L~ 313 (400)
T 3asa_A 239 GFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLLRKALL 313 (400)
T ss_dssp TTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997665 3433322 1233457889999988888754 256778888899999999999
Q ss_pred hcCCceecCCceEEEEEe-cccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 043923 346 KAGISCLKSNAGLFCWVD-MRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424 (469)
Q Consensus 346 ~~g~~v~~~~~g~~~~v~-~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L 424 (469)
+.|+++.++.+|+|+|++ ++...+. .+++..+++++||.+.||..|+..+++++||++. .+++++++++++|
T Consensus 314 ~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~-~~~e~i~~~l~~l 386 (400)
T 3asa_A 314 ATGFEVFGGEHAPYLWVKPTQANISD------RDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSL-GKREDILAACERL 386 (400)
T ss_dssp HTTCEEEECSSSSEEEEECCCTTCCT------TTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECC-SCHHHHHHHHHHH
T ss_pred HCCCeeeCCCCceEEEEeccCCCCCH------HHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEee-CCHHHHHHHHHHH
Confidence 989998888788999999 7643222 1467777777799999999887555789999964 4899999999999
Q ss_pred HHHHHhhcc
Q 043923 425 KAFVDSITT 433 (469)
Q Consensus 425 ~~~l~~~~~ 433 (469)
+++++++..
T Consensus 387 ~~~~~~~~~ 395 (400)
T 3asa_A 387 QMAPALQSH 395 (400)
T ss_dssp HC-------
T ss_pred HHHHHhhhh
Confidence 999875544
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=341.31 Aligned_cols=336 Identities=19% Similarity=0.253 Sum_probs=265.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|||+.|+|+++ ++.+.+++.+.. .....|++ .+..+|++++|++++ +++++|+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~v~ 80 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNL-------------DCIERYPD-ADYFHLHQALARHHQ--------VPASWIL 80 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTG-------------GGGGSCCC-TTCHHHHHHHHHHHT--------SCGGGEE
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHH-------------HHhhcCCC-CCHHHHHHHHHHHHC--------cCHHHEE
Confidence 346899999998874 566777776641 22457875 478999999999995 5788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.++ +||.|+++.|+|..+...+... |.+++.+|.+.++++.+ ++++.+.+. +++++|
T Consensus 81 ~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~-l~~~~~~~~------~~~~~v 150 (364)
T 1lc5_A 81 AGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLREADGWQL-TDAILEALT------PDLDCL 150 (364)
T ss_dssp EESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCC-CTTHHHHCC------TTCCEE
T ss_pred ECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHHHc-CCeEEEEeCCcccccch-hHHHHHhcc------CCCCEE
Confidence 9999999999999999 6799999999999999888877 99999999875445554 444444332 278889
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.++|.+++++|+++|++||+++|+||+|.++.+++. +...... ..+++++++|+||++|
T Consensus 151 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~--------~~~~~i~~~s~sK~~~ 219 (364)
T 1lc5_A 151 FLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET---GFIPALK--------DNPHIWVLRSLTKFYA 219 (364)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC---CSGGGCT--------TCTTEEEEEESTTTTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc---chhhHhc--------cCCCEEEEEECchhhc
Confidence 9999999999999999999999999999999999999998655422 2223322 3468899999999999
Q ss_pred CCcceEEEEE-ecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 276 LPGFRVGAIY-SNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
++|+|+||++ + ++.+.+.+......+.++.+.+.++.++|++. +++++.++.++++++++.+.|+++ |+++.+
T Consensus 220 ~~G~r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 294 (364)
T 1lc5_A 220 IPGLRLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDS----AWQQATWHWLREEGARFYQALCQLPLLTVYP 294 (364)
T ss_dssp CTTTCCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHHHHHHHHHHHHTSTTEEECC
T ss_pred CCccceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHhcCCCCEECC
Confidence 9999999999 7 45555555555545568899999999999874 357888889999999999999987 888766
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+. |+|+|++++.. . .++++.++ ++||.+.||..|+...++++||+++ +++++++++++|++++++..
T Consensus 295 ~~-g~~~~~~~~~~--~------~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 295 GR-ANYLLLRCERE--D------IDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp CS-SSEEEEEESCT--T------CCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC----
T ss_pred CC-CeEEEEECCCc--H------HHHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHhhccc
Confidence 54 57888888641 1 13566665 5699999999887555789999997 68899999999999877654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.79 Aligned_cols=346 Identities=14% Similarity=0.194 Sum_probs=270.8
Q ss_pred CCCeeeeeccc---cccC-h--HHHHHHHhc-CCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 37 PTGIIQMGLAE---NQLS-F--DLLESWLDR-NPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 37 ~~~~i~L~~~~---n~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
..++|||+.|. +..+ + +.+.+++.+ .... .....|++..|..+||+++|+++....+ ..+
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~ 91 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP-----------HGASLYLPMEGLNCYRHAIAPLLFGADH--PVL 91 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHH
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc-----------cccccCCCCCchHHHHHHHHHHHhcCCc--ccc
Confidence 34789999994 3332 2 556666554 3110 1245788888999999999999975432 123
Q ss_pred CCC--cEEEeCChHHHHHHHH--HHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHH
Q 043923 110 DTS--KIVLTAGATSANETLM--FCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLA 185 (469)
Q Consensus 110 ~~~--~i~~t~G~~~al~~~~--~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 185 (469)
+++ +|++|+|+++++..++ .+++++||+|+++.|+|..+...++.. |.+++.+|+..+.++.+|++++++++++.
T Consensus 92 ~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 92 KQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp HTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHT-TCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred cccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHc-CCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 678 9999999999999995 456799999999999999999888887 99999999854457889999999998631
Q ss_pred HhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC-CCccchhhhhhccccccCCcCCeE
Q 043923 186 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. ....++..+.. ..+++
T Consensus 171 ---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 239 (397)
T 3fsl_A 171 ---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS--------AGLPA 239 (397)
T ss_dssp ---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH--------TTCCE
T ss_pred ---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh--------cCCCE
Confidence 2367889999999999999999999999999999999999999999877653 22344444433 45789
Q ss_pred EEEccCccccCCCcceEEEEEe--cCHHHHH-HHHHh-----cccccCcHHHHHHHHHHhcCchhh---HHHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYS--NDDMVVA-AATKM-----SSFGLVSSQTQYLLSALLSDKKFT---QNYISENKKRL 333 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~--~~~~~~~-~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l 333 (469)
++++|+||+||++|+|+||+++ ++..+.. ..... ..+..++.+.|.++..++.+..+. .+++++.++++
T Consensus 240 i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 319 (397)
T 3fsl_A 240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRI 319 (397)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975 3333332 22222 233345778999998888875421 45678889999
Q ss_pred HHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe
Q 043923 334 KQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 409 (469)
Q Consensus 334 ~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~ 409 (469)
+++++++.+.|+++ |+++.++++|+|+|++++. +.+..+++++||.+.||. |+++
T Consensus 320 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~----------Ris~ 378 (397)
T 3fsl_A 320 LAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCV 378 (397)
T ss_dssp HHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTC----------EEEG
T ss_pred HHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCH-----------HHHHHHHHhCCEEECCCC----------eEEE
Confidence 99999999999987 6888888899999988752 345667778999999873 9999
Q ss_pred ecCCHHHHHHHHHHHHHHH
Q 043923 410 ANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 410 ~~~~~e~i~~~l~~L~~~l 428 (469)
+..+++++++++++|++++
T Consensus 379 ~~~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 379 AGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp GGCCTTTHHHHHHHHHHHC
T ss_pred EecCHhhHHHHHHHHHhhC
Confidence 8768888999999998763
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=350.42 Aligned_cols=358 Identities=14% Similarity=0.112 Sum_probs=273.7
Q ss_pred CCCeeeeeccccccChHHHH-HHHhcC--CCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 37 PTGIIQMGLAENQLSFDLLE-SWLDRN--PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
..++|||+.|.+........ .+.... .+. ... .......|++..|+++||++||++++ +++++
T Consensus 32 ~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~--~~~----~~~~~~~Y~~~~g~~~lr~~ia~~~~--------~~~~~ 97 (427)
T 3ppl_A 32 KNLKLDLTRGKPSSEQLDFADELLALPGKGDF--KAA----DGTDVRNYGGLDGIVDIRQIWADLLG--------VPVEQ 97 (427)
T ss_dssp TCCCEECCCCSCCHHHHHTTGGGGGCSCTTCC--BCT----TSCBTTSSCCSSCCHHHHHHHHHHHT--------SCGGG
T ss_pred CCceEecCCCCCChHHCCCcHHHHHHhhhHHH--hhc----cchhhcCCCCCCCcHHHHHHHHHHhC--------CCcce
Confidence 34679999998665321111 122221 111 000 01345689998999999999999995 67899
Q ss_pred EEEeCChHHHH--HHHHHHhcC--C----------CCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHH
Q 043923 114 IVLTAGATSAN--ETLMFCLAE--P----------GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIE 179 (469)
Q Consensus 114 i~~t~G~~~al--~~~~~~l~~--~----------gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 179 (469)
|++|+|+++++ .+++.++++ + ||+|+++.|+|..+...++.. |.+++.+|++.+ .+|+++++
T Consensus 98 i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~ 173 (427)
T 3ppl_A 98 VLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF-GFEMISVPMNED---GPDMDAVE 173 (427)
T ss_dssp EEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT-TCEEEEEEEETT---EECHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc-CCEEEEeCCCCC---CCCHHHHH
Confidence 99999999999 588888876 6 899999999999999999887 999999999853 38999999
Q ss_pred HHHHHHHhcCCceeEEEEe-cCCCCCCCCCCHHHHHHHHHHH-HhcCeEEEEeccccccccCCCC--ccchhhhhhcccc
Q 043923 180 EAYQLAQKRHLKVKGVLVT-NPSNPLGTTMSRNELNLLVNII-TEKNIHLISDEIYSGTVFSSPG--FVSIMEILKDRNC 255 (469)
Q Consensus 180 ~~i~~~~~~~~~~~~vvl~-~P~NPtG~~~s~e~l~~l~~~~-~~~~~~iI~Deay~~~~~~~~~--~~s~~~~~~~~~~ 255 (469)
++++. +++++|+++ +||||||.+++.+++++|+++| ++||++||+||+|.++.|++.. ..++..+....
T Consensus 174 ~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-- 246 (427)
T 3ppl_A 174 ELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAA-- 246 (427)
T ss_dssp HHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT--
T ss_pred HHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhcc--
Confidence 88841 278887755 7899999999999999999999 9999999999999987776543 23555542100
Q ss_pred ccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 043923 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRL 333 (469)
Q Consensus 256 ~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l 333 (469)
+..+++++++||||+ +++|+|+||+++++. +.+.+.... ..+.++.+.|.++..++.+.....+++++.++.+
T Consensus 247 ---~~~~~~i~~~S~SK~-~~~G~r~G~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 321 (427)
T 3ppl_A 247 ---GNPNRFWAFTSTSKI-TLAGAGVSFFLTSAE-NRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASL 321 (427)
T ss_dssp ---TCTTSEEEEEESTTT-SCTTSSCEEEECCHH-HHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred ---CCCCcEEEEechhhc-cCcCccEEEEEcCHH-HHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 134789999999999 579999999999644 444444332 2345788999999999998333377888899999
Q ss_pred HHHHHHHHHHHHhc-----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC-CCCCCC---CCCCe
Q 043923 334 KQRHRKLVSGLEKA-----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP-GSSCHC---TEPGW 404 (469)
Q Consensus 334 ~~~~~~l~~~L~~~-----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p-g~~f~~---~~~~~ 404 (469)
+++++.+.+.|.+. ++.+..+.+|+|+|++++.. +..++.. .+.++||.++| |..|.. ..+++
T Consensus 322 ~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~~~~~~~-~l~~~gv~v~~~g~~~~~~~~~~~~~ 393 (427)
T 3ppl_A 322 APKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-------TASRVAE-LAKEAGIALTGAGSSYPLRQDPENKN 393 (427)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-------CHHHHHH-HHHHTTEECCCTTTTSGGGCCTTSCE
T ss_pred HHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-------hHHHHHH-HHHHCCCEEecCcCcCCCCCCCCCCe
Confidence 99999988888652 47777888999999999853 1224544 45678999999 555542 24689
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 405 FRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 405 iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+||+++..+++++++++++|++++++..
T Consensus 394 ~Ris~~~~~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 394 LRLAPSLPPVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999986689999999999999987653
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=337.24 Aligned_cols=334 Identities=19% Similarity=0.284 Sum_probs=269.3
Q ss_pred CCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 36 NPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
.+.++|||+.|+|+++ ++.+.+++.+. +.....|+. .+..+|++++|++++ +++++|
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i 81 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEG-------------IKNLGVYPD-VNYRRLNKSIENYLK--------LKDIGI 81 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHH-------------HHGGGSCCC-TTCHHHHHHHHHHHT--------CCSCEE
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHH-------------HHHhcCCCC-ccHHHHHHHHHHHhC--------CCcceE
Confidence 4567999999999985 45566655542 233456764 578999999999995 678999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++++..++.++ |+|+++.|+|..+...+... |++++.+|++.+++ +++++++++++ ++++
T Consensus 82 ~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~--~~~~~l~~~l~-------~~~~ 147 (361)
T 3ftb_A 82 VLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKH-GVSVVFSYLDENMC--IDYEDIISKID-------DVDS 147 (361)
T ss_dssp EEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHHHT-TCEEEEEECCTTSC--CCHHHHHHHTT-------TCSE
T ss_pred EEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHHHc-CCeEEEeecCcccC--CCHHHHHHhcc-------CCCE
Confidence 99999999999999888 89999999999999988887 99999999986544 45688887764 2789
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.++ . ..+...... ..+++++++|+||.+
T Consensus 148 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~-~~~~~~~~~--------~~~~~i~~~s~sK~~ 217 (361)
T 3ftb_A 148 VIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-P-SSSFVGEIK--------NYSCLFIIRAMTKFF 217 (361)
T ss_dssp EEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-T-TSSSGGGTT--------TCSSEEEEEESSSTT
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-c-ccchhHhcc--------cCCCEEEEeeChhhc
Confidence 999999999999999999999999999999999999999987665 2 234333332 457889999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-ee
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CL 352 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~ 352 (469)
|++|+|+||++..++.+.+.+......++.+++.+.++.++|++. +++++.+++++++++++.+.|+++ +++ +.
T Consensus 218 ~~~G~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 293 (361)
T 3ftb_A 218 AMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIEELNKIGFIKRVF 293 (361)
T ss_dssp SCGGGCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCCCcceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCCceec
Confidence 999999999994466666666666556678899999999999863 457888899999999999999988 777 66
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++.+ .|+|++++. .+..+++..+++ +||.+.||..|+..+++++|++++ +++++++++++|+++.+.
T Consensus 294 ~~~~-~~~~~~~~~-------~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 294 SPHA-NFVLCRLEN-------ISGEKLYDSLLK-EDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp CCSS-SEEEEEESS-------SCHHHHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred CCCC-eEEEEEcCC-------CCHHHHHHHHHH-CCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence 6655 678888875 123356677664 599999999998777889999998 688888888888887653
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=363.28 Aligned_cols=357 Identities=21% Similarity=0.308 Sum_probs=279.4
Q ss_pred CeeeeeccccccChHH-HHHHHhcCCCccccccCCcccccccccCC-CCCCcHHHHHHHHHHHHhHcCCCCCCC-CCcEE
Q 043923 39 GIIQMGLAENQLSFDL-LESWLDRNPDAAGFKRDGQSIFRELALFQ-DYHGLPAFKKALVEFMSEIRGNKVTFD-TSKIV 115 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~Lr~aia~~l~~~~~~~~~~~-~~~i~ 115 (469)
++|+|+.|.+.++++. +.++.... .. ..|+ +..|.+++++++|+++.+.++.++.+. +++|+
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~--------------~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~ 168 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGA--------------VA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLF 168 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHH--------------HT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEE
T ss_pred hheeccCCCCCcCCcHHHHHHHHHH--------------Hh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEE
Confidence 4799999988887543 44444332 11 2455 678999999999999976523112233 47999
Q ss_pred EeCChHHHHHHHHHH-----hcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC--CCCcccCHHHHHHHHHHHHhc
Q 043923 116 LTAGATSANETLMFC-----LAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS--LNGFQITETAIEEAYQLAQKR 188 (469)
Q Consensus 116 ~t~G~~~al~~~~~~-----l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~i~~~~~~ 188 (469)
+|+|+++++..++.+ ++++||.|+++.|+|.++...+... |.+++.++++. +.+|.+|++++++++++
T Consensus 169 ~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~---- 243 (533)
T 3f6t_A 169 PTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELK-DYELVEVDLHSYEKNDWEIEPNEIEKLKDP---- 243 (533)
T ss_dssp EEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGG-GSEEEEECCCEETTTTSEECHHHHHHHSCT----
T ss_pred EECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHc-CCeEEEEEecCCcccCCCCCHHHHHHHhCC----
Confidence 999999999999998 7899999999999999998888877 99999998864 56789999999988754
Q ss_pred CCceeEEEEecCCCCCCCCCCHHHHHHHHHHHH-hcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEE
Q 043923 189 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIIT-EKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267 (469)
Q Consensus 189 ~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~-~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i 267 (469)
++++|++++|+||||.+++.+++++|+++|+ +||++||+||+|.++.++ ..++... ..++++++
T Consensus 244 --~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~---~~~~~~~----------~~~~~i~~ 308 (533)
T 3f6t_A 244 --SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN---FKSIYSV----------VPYNTMLV 308 (533)
T ss_dssp --TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT---CCCHHHH----------SGGGEEEE
T ss_pred --CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC---ccCHhhc----------CCCCEEEE
Confidence 8999999999999999999999999999999 689999999999986553 2344444 33789999
Q ss_pred ccCccccCCCcceEEEEEecCHHHHHHH------------------------------------HHhc--ccccCcHHHH
Q 043923 268 YSLSKDLGLPGFRVGAIYSNDDMVVAAA------------------------------------TKMS--SFGLVSSQTQ 309 (469)
Q Consensus 268 ~S~SK~~g~~GlRiG~li~~~~~~~~~~------------------------------------~~~~--~~~~~s~~~q 309 (469)
+||||.||++|+|+||+++++..+.+.+ .... ...+.+.+.|
T Consensus 309 ~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q 388 (533)
T 3f6t_A 309 YSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQ 388 (533)
T ss_dssp EESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHH
T ss_pred ecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHH
Confidence 9999999999999999999766221111 1111 1234677777
Q ss_pred HH----HHHHhcC----chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccC-C--------
Q 043923 310 YL----LSALLSD----KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSN-T-------- 372 (469)
Q Consensus 310 ~~----~~~~l~~----~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~-~-------- 372 (469)
.+ +...|.. ..+ .+++++.++.++++++.+.+.|. .++.+.++.+|+|+|++++...... .
T Consensus 389 ~a~a~~a~~~L~~~~g~~~~-~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~ 466 (533)
T 3f6t_A 389 IMEALFSMTHLLTSTNGGSD-DPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLT 466 (533)
T ss_dssp HHHHHHHHHHHTTCBGGGTB-CHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhh
Confidence 77 3445541 223 66788999999999999999998 8888888999999999987421100 0
Q ss_pred -hhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 373 -FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 373 -~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..+..+++.++++++||.+.||+.|+. +++++||+++.++++++++++++|+++++++.+
T Consensus 467 ~~~~~~~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 467 NNFEQVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp HHCCHHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 012346778888889999999999986 467999999877999999999999999988766
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=331.89 Aligned_cols=322 Identities=18% Similarity=0.272 Sum_probs=254.6
Q ss_pred CCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 35 QNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 35 ~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
..+.++|+|+.|+|+++ ++.+.+++.+. ......|+ ..|..+||+++|++++ +++++
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~-------------~~~~~~y~-~~~~~~lr~~la~~~~--------~~~~~ 70 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAA-------------AARINRYP-FDAEPRVMRKLAEHFS--------CPEDN 70 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHH-------------GGGTTSCC-TTHHHHHHHHHHHHHT--------SCGGG
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHh-------------hhhhccCC-CCchHHHHHHHHHHhC--------cCHHH
Confidence 44668899999999986 56777777663 13456786 4688999999999986 67889
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++|+|+++++..++.++ +||.|+++.|+|..+...++.. |++++.+|.+. +|.+|+++++++ .+++
T Consensus 71 i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~--------~~~~ 137 (337)
T 3p1t_A 71 LMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVS-GLRHFEIGLTD--DLLLDPNDLAQV--------SRDD 137 (337)
T ss_dssp EEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHTTS-CCEEEEECBCT--TSSBCHHHHTTC--------CTTE
T ss_pred EEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHhh--------cCCC
Confidence 999999999999999988 9999999999999999988887 99999999873 577899988764 2678
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
++++++|+||||.+++.+++.+| |+++++ +|+||+|+++.+... ... . ..+++++++|+||+
T Consensus 138 ~v~i~~p~nptG~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~--~~~----~--------~~~~~i~~~S~sK~ 199 (337)
T 3p1t_A 138 CVVLANPSNPTGQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRA--RGL----A--------YGENELVFRSFSKS 199 (337)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSS--SCC----C--------CBTTEEEEEESSST
T ss_pred EEEEeCCCCCCCCCCCHHHHHHH---HHhCCc-EEEECCChhhccccc--ccc----c--------cCCCEEEEeeCchh
Confidence 99999999999999998886555 557787 566999997433222 111 1 33678999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
||++|+|+||+++++. +.+.+......+.++.+.|.++.+++++.++ +.+.++++.++++++.+.|+++|+++.+
T Consensus 200 ~g~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 274 (337)
T 3p1t_A 200 YGLAGLRLGALFGPSE-LIAAMKRKQWFCNVGTLDLHALEAALDNDRA----REAHIAKTLAQRRRVADALRGLGYRVAS 274 (337)
T ss_dssp TCCTTTCCEEEECCHH-HHHHHHTTSCTTCSCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHHHHHTTCCBCC
T ss_pred ccCcchheEEEEeCHH-HHHHHHhhcCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCcCEECC
Confidence 9999999999999554 4455555555566888999999999987543 4455666677789999999999998887
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+.++ |+|+..+.. +.+..+++++||.+.||..|+. ++++|++++ +++++++++++|+++.+
T Consensus 275 ~~~~-~~~~~~~~~----------~~~~~~l~~~gi~v~~g~~~~~--~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 275 SEAN-FVLVENAAG----------ERTLRFLRERGIQVKDAGQFGL--HHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CSSS-EEEEECTTT----------HHHHHHHHHTTEECEEGGGGTC--CSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred CCCe-EEEEEcCCH----------HHHHHHHHHCCeEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 7775 666666531 1234455678999999998864 679999998 79999999999988753
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=359.11 Aligned_cols=357 Identities=16% Similarity=0.177 Sum_probs=273.8
Q ss_pred cccCCCCCccchhhhhhh------cC-----CCCCCCCCCCeeeeeccccccCh-HHHHHHHhcCCCccccccCCccccc
Q 043923 10 CNTHGQDSSYFLGWQEYE------KN-----PYDEVQNPTGIIQMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFR 77 (469)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~i~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (469)
|..+|. +|+.+| .+. .| ++....++.++|+|+.++|.+++ +.+.+++.+.... .+ .
T Consensus 20 ~~~~g~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~l~~-----~~----~ 87 (427)
T 2hox_A 20 CSEHGR--AFLDGI-ISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLV-----SP----W 87 (427)
T ss_dssp CGGGEE--CCTTSC-EETTEECCEECTTEESTTSCEECTTCCEECCSCCCGGGHHHHTTSHHHHCEEE-----CT----T
T ss_pred cCcCCc--eeeccc-cccCCcccccccccCCCCCcccCCCceEEecCcCCCCCCCHHHHHhHHhhhhc-----CC----c
Confidence 344444 899999 665 45 67788888899999999998864 4455554432100 00 1
Q ss_pred ccccCCCCC-C---cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh--------cCCCCEEEEccCCC
Q 043923 78 ELALFQDYH-G---LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL--------AEPGEAFLLPTPYY 145 (469)
Q Consensus 78 ~~~~Y~~~~-g---~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--------~~~gd~Vl~~~P~y 145 (469)
....|++.. | .++||++||++++++.+ +.+++++|++|+|+++++.+++.+| +++||.|+++.|+|
T Consensus 88 ~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~--~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y 165 (427)
T 2hox_A 88 HRMSYFFNPVSNFISFELEKTIKELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFY 165 (427)
T ss_dssp TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCC
T ss_pred ccccCCCCCCCccchHHHHHHHHHHHHHhCC--cCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCc
Confidence 112498888 8 89999999999987654 3467899999999999999999999 89999999999999
Q ss_pred cChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCe
Q 043923 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNI 225 (469)
Q Consensus 146 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~ 225 (469)
..|...++.. |++++.+ .+|++.+++++++ ++++|+++|||||||.+++ +.+ + ++
T Consensus 166 ~~~~~~~~~~-g~~~~~~--------~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l-------~--~~ 220 (427)
T 2hox_A 166 PVFREQTKYF-DKKGYVW--------AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI-------K--GC 220 (427)
T ss_dssp HHHHHHHHHS-CBTTEEE--------EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS-------T--TC
T ss_pred ccHHHHHHHc-CCeeeee--------cCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH-------c--CC
Confidence 9999988887 8887643 3566777766643 7899999999999999999 532 2 45
Q ss_pred EEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc--cc
Q 043923 226 HLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GL 303 (469)
Q Consensus 226 ~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~ 303 (469)
.+|.|++|. + ++.++..+ ..+++++++||||.+|++|+|+||++++++.+.+.+.++... +.
T Consensus 221 ~~i~d~~~~----~--~~~s~~~~----------~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~ 284 (427)
T 2hox_A 221 KSIYDMVYY----W--PHYTPIKY----------KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEG 284 (427)
T ss_dssp EEEEECTTC----S--TTTSCCCS----------CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSS
T ss_pred CEEEeeccc----C--CCCCcccc----------CCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 677777663 3 12333333 237899999999999999999999999656666666555433 45
Q ss_pred CcHHHHHHHHHHhcCc-hh-------hHHHHHHHHHHHHHHHHHHHHHHHhc-CCce--------------ecCCceEEE
Q 043923 304 VSSQTQYLLSALLSDK-KF-------TQNYISENKKRLKQRHRKLVSGLEKA-GISC--------------LKSNAGLFC 360 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~-~~-------~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v--------------~~~~~g~~~ 360 (469)
++.+.|.++..+|.+. ++ ..+++++.++.++++++++.+.|+++ |+++ ..+++|+|+
T Consensus 285 ~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~ 364 (427)
T 2hox_A 285 TPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYA 364 (427)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEE
T ss_pred CCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEE
Confidence 8889999998888763 11 14567788899999999999999987 5543 356679999
Q ss_pred EEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 361 ~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
|++++.. ..+++..+++++||.++||..|+. +++++|||++. +++++++++++|++++++.
T Consensus 365 ~~~~~~~--------~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~-~~e~l~~~l~~l~~~~~~~ 425 (427)
T 2hox_A 365 WVKCEWE--------EDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKAK 425 (427)
T ss_dssp EEEECSG--------GGCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSS-CHHHHHHHHHHHHHHHTCC
T ss_pred EEECCCc--------HHHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHhhc
Confidence 9999741 124677788788999999999976 67899999996 8999999999999998653
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-42 Score=345.70 Aligned_cols=344 Identities=14% Similarity=0.199 Sum_probs=267.4
Q ss_pred CCeeeeecccc-ccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 38 TGIIQMGLAEN-QLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
.++|+|++|.+ .++ ++.+.+++.+... .....|++..|.++||+++++++....+ .++++++|.
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~ 106 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATL------------GTNMDYAPVTGIASFVEEAQKLCFGPTC--AALRDGRIA 106 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCC------------CSCCCCCCTTCCHHHHHHHHHHHHCSSC--HHHHTTCEE
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCc------------cccccCCCCCCcHHHHHHHHHHHcCCCc--hhhccCcee
Confidence 47899999986 443 4455555555411 3356798889999999999999842111 012267884
Q ss_pred --EeCChHHHHHHHH---HHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCC
Q 043923 116 --LTAGATSANETLM---FCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 116 --~t~G~~~al~~~~---~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
.+.|+++++..+. .+++++||.|++++|+|..+...++.. |++++.+|++.+++|.+|++++++++++. ..
T Consensus 107 ~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~ 182 (409)
T 4eu1_A 107 SCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-GMELTPYSYYDPATKGLNLAGMLECLDKA---PE 182 (409)
T ss_dssp EEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-TCEEEEECCEETTTTEECHHHHHHHHHHS---CT
T ss_pred eeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEEEeecCcCCcCcHHHHHHHHHhC---CC
Confidence 5999999998753 456789999999999999999999887 99999999865567889999999998641 12
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC--CccchhhhhhccccccCCcCCeEEEEc
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTQVWNRVHIVY 268 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~i~i~ 268 (469)
+++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++. ...++..+.. ..+++++++
T Consensus 183 ~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~ 254 (409)
T 4eu1_A 183 GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD--------MVPNLIVAQ 254 (409)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT--------TSSCCEEEE
T ss_pred CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh--------hCCcEEEEe
Confidence 566777799999999999999999999999999999999999998766542 1233343333 447889999
Q ss_pred cCccccCCCcceEEEE--EecCHH----HHHHHHHhc--ccccCcHHHHHHHHHHhcCchhh---HHHHHHHHHHHHHHH
Q 043923 269 SLSKDLGLPGFRVGAI--YSNDDM----VVAAATKMS--SFGLVSSQTQYLLSALLSDKKFT---QNYISENKKRLKQRH 337 (469)
Q Consensus 269 S~SK~~g~~GlRiG~l--i~~~~~----~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~ 337 (469)
||||+||++|+|+||+ +++++. +.+.+.... ....++.+.|.++..+|.+..+. .+++++.++++++++
T Consensus 255 S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (409)
T 4eu1_A 255 SFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVR 334 (409)
T ss_dssp ECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 665655 444443322 23346789999999999886421 445778889999999
Q ss_pred HHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCC
Q 043923 338 RKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMS 413 (469)
Q Consensus 338 ~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~ 413 (469)
+++.+.|+++| +++.++++|+|+|+.++. +++..+++++||.+.|| .||+++..+
T Consensus 335 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gv~v~p~----------~Ri~~~~~~ 393 (409)
T 4eu1_A 335 KRLVSELKACGSVHDWSHIERQVGMMAYTGLTR-----------EQVELLRSEYHIYMTLN----------GRAAVSGLN 393 (409)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCC
T ss_pred HHHHHHHHhcCCCCCcceecCCceEEEEeCCCH-----------HHHHHHHHcCCEEEcCC----------CEEEEEecC
Confidence 99999999987 788888999999977652 45677887889999986 399998778
Q ss_pred HHHHHHHHHHHHHHH
Q 043923 414 EDTLKLSMQRLKAFV 428 (469)
Q Consensus 414 ~e~i~~~l~~L~~~l 428 (469)
++++++++++|++++
T Consensus 394 ~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 394 STNVEYVSQAIHNVT 408 (409)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHh
Confidence 888999999999876
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=343.66 Aligned_cols=374 Identities=14% Similarity=0.130 Sum_probs=275.0
Q ss_pred ccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccc----c--ccChHHHHHHHhcCCCccccccCCcccccc
Q 043923 5 SGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAE----N--QLSFDLLESWLDRNPDAAGFKRDGQSIFRE 78 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~----n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (469)
+.+++.....+.+|+|.-...+..++ +| .|||++|. + +..++.++++.+...+. ..
T Consensus 18 ~~~~~~v~~~p~d~i~~l~~~~~~d~-----~~--kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-----------~~ 79 (420)
T 4h51_A 18 AERWQKIQAQAPDVIFDLAKRAAAAK-----GP--KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM-----------NL 79 (420)
T ss_dssp HHHHHTCCCCCCCHHHHHHHHHHHCC-----SS--CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT-----------TC
T ss_pred hHHHhCCCCCCCChHHHHHHHHhcCC-----CC--CEEeecCcccCCCCCCCCCHHHHHHHHHHhcC-----------CC
Confidence 44566677788889887766665553 22 59999982 2 22236677765543111 22
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCCEEEEccCCCcChHHHHhh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL----AEPGEAFLLPTPYYPGFDRDLKW 154 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~~~~~~~~ 154 (469)
.+.|.|..|.++||+++++++... .........+.|.|++.|+..++..+ .+|||+|++++|+|+.|...++.
T Consensus 80 ~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~ 156 (420)
T 4h51_A 80 DYEYLPISGYQPFIDEAVKIIYGN---TVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKA 156 (420)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHH
T ss_pred CCCCCCcCChHHHHHHHHHHhcCC---CccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHH
Confidence 346999999999999999997422 11112223456889998887766554 47999999999999999999998
Q ss_pred hCCCE-EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc
Q 043923 155 RTGVE-IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233 (469)
Q Consensus 155 ~~g~~-~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay 233 (469)
. |.+ +...+......+.+|.+.+.+.+... .++++++++++||||||.+++.+++++|+++|+++++++|+||+|
T Consensus 157 a-G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y 232 (420)
T 4h51_A 157 A-GWKNICTYAYYDPKTVSLNFEGMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAY 232 (420)
T ss_dssp T-TCCCEEEEECEEGGGTEECHHHHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred c-CCeEEEeeccccccccCCCHHHHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhh
Confidence 8 886 44555544567788999888887642 346778888999999999999999999999999999999999999
Q ss_pred cccccCCCCccc--hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH---HHH-----hccccc
Q 043923 234 SGTVFSSPGFVS--IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA---ATK-----MSSFGL 303 (469)
Q Consensus 234 ~~~~~~~~~~~s--~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~---~~~-----~~~~~~ 303 (469)
.++.+++....+ ...... ..++++++.||||.|+++|+|+||++++.+..... ..+ ...+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~ 304 (420)
T 4h51_A 233 QGYASGSLDTDAYAARLFAR--------RGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTC 304 (420)
T ss_dssp TTTTTSCHHHHTHHHHHHHH--------TTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSS
T ss_pred hhhccCCcccchHHHHhHHh--------hCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCc
Confidence 998766432211 122222 44689999999999999999999998865433221 111 123445
Q ss_pred CcHHHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHH
Q 043923 304 VSSQTQYLLSALLSDKKFT---QNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~ 376 (469)
++...|.++..++.+..+. .++++..+++++++|+.|.+.|+++| |.+..+++|+|.|+.++.
T Consensus 305 ~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~---------- 374 (420)
T 4h51_A 305 PPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSK---------- 374 (420)
T ss_dssp CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCH----------
T ss_pred chHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCH----------
Confidence 6788899999999886532 45567788999999999999999985 455677889999987753
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+.++ +|+++||.+.|+. |||+++++++.++.+.++|.+++++..+
T Consensus 375 -e~v~-~L~e~~Vy~~~~g----------Ris~Agl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 375 -AQCE-YCQNHNIFITVSG----------RANMAGLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp -HHHH-HHHHTTEECCTTC----------EEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred -HHHH-HHHhCCEEEcCCC----------EEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence 2333 5678899988752 9999988999999999999999987765
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=345.09 Aligned_cols=349 Identities=14% Similarity=0.167 Sum_probs=272.8
Q ss_pred CCeeeeecccc------ccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLAEN------QLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
.++|||+.|.+ +.+++.+.+++.+.... ......|.+..|..+||+++|+++...++ +.+++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 97 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----------SSLNHEYLPILGLAEFRTCASRLALGDDS--PALQE 97 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhC----------hhhccCCCCCCCCHHHHHHHHHHHhcCCC--CccCC
Confidence 56899999973 23446677776653100 01345788788999999999999964333 22468
Q ss_pred CcEEE--eCChHHHHHHHHH--HhcCCC-----CEEEEccCCCcChHHHHhhhCCCE-EEEeeccCCCCcccCHHHHHHH
Q 043923 112 SKIVL--TAGATSANETLMF--CLAEPG-----EAFLLPTPYYPGFDRDLKWRTGVE-IVPIQCTSLNGFQITETAIEEA 181 (469)
Q Consensus 112 ~~i~~--t~G~~~al~~~~~--~l~~~g-----d~Vl~~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~~l~~~ 181 (469)
++|++ |+|+++|+..++. .++.+| |.|+++.|+|..+...+... |++ ++.++++.+++|.+|+++++++
T Consensus 98 ~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (412)
T 1ajs_A 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKDIRSYRYWDTEKRGLDLQGFLSD 176 (412)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSCEEEEECEETTTTEECHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHc-CCceeEEEeeecCCCCccCHHHHHHH
Confidence 89999 9999999999964 456799 99999999999999888887 999 9999985445788999999998
Q ss_pred HHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC--CCccchhhhhhccccccCC
Q 043923 182 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS--PGFVSIMEILKDRNCENTQ 259 (469)
Q Consensus 182 i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~--~~~~s~~~~~~~~~~~~~~ 259 (469)
+++. .++++++++++|+||||.+++.+++++|+++|++||++||+||+|.++.+++ ....++..+..
T Consensus 177 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-------- 245 (412)
T 1ajs_A 177 LENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS-------- 245 (412)
T ss_dssp HHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH--------
T ss_pred HHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc--------
Confidence 8742 2367788899999999999999999999999999999999999999876653 12234443422
Q ss_pred cCCeEEEEccCccccCCCcceEEEEEe---cCHH---HHHHHHH-h-cccccCcHHHHHHHHHHhcCchhh---HHHHHH
Q 043923 260 VWNRVHIVYSLSKDLGLPGFRVGAIYS---NDDM---VVAAATK-M-SSFGLVSSQTQYLLSALLSDKKFT---QNYISE 328 (469)
Q Consensus 260 ~~~~~i~i~S~SK~~g~~GlRiG~li~---~~~~---~~~~~~~-~-~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~ 328 (469)
..++++++.|+||.||++|+|+||+++ +++. +...+.. . ..+..++++.|.++.++|++..+. .+++++
T Consensus 246 ~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 325 (412)
T 1ajs_A 246 EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKT 325 (412)
T ss_dssp TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 347899999999999988999999998 5442 2232332 2 223335889999999999876411 456788
Q ss_pred HHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCe
Q 043923 329 NKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404 (469)
Q Consensus 329 ~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~ 404 (469)
.+++++++++++.+.|++++ +++..+.+|+|+|+.++. +++..+++++||.+.|+
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~---------- 384 (412)
T 1ajs_A 326 MADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPS---------- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTT----------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCH-----------HHHHHHHHhCCEEecCC----------
Confidence 89999999999999999886 787788889999987651 35667777889999874
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 405 FRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 405 iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+|++++..+++++++++++|++++++.
T Consensus 385 ~Ris~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 385 GRINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp SEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred cEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 599998568999999999999998754
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=342.88 Aligned_cols=347 Identities=15% Similarity=0.191 Sum_probs=266.6
Q ss_pred CCeeeeecccc------ccChHHHHHHHhc-CCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 38 TGIIQMGLAEN------QLSFDLLESWLDR-NPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 38 ~~~i~L~~~~n------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.++|||+.|.. ..+++.+.+++.+ .... .....|++..|..+||+++++++...++ +.++
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~ 95 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-----------SYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQ 95 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-----------ccccCCCCCCCcHHHHHHHHHHHhcCCC--CCCC
Confidence 46899999873 1344666666655 3211 1245688888999999999999975433 2346
Q ss_pred CCcEEE--eCChHHHHHHHH--HHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 111 TSKIVL--TAGATSANETLM--FCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 111 ~~~i~~--t~G~~~al~~~~--~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
+++|++ |+|+++++.+++ ..++.+||+|+++.|+|..+...+... |++++.+|.....++.+|++++++++++.
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 173 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQKA- 173 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCEEEEECEETTTTEECHHHHHHHHHHS-
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHc-CceEEEEeeecCCCCccCHHHHHHHHHhC-
Confidence 889999 999999999883 344579999999999999999988887 99999999822236789999999998751
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC--CCccchhhhhhccccccCCcCC--
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS--PGFVSIMEILKDRNCENTQVWN-- 262 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~-- 262 (469)
.+...++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++ ....++..+.. ..+
T Consensus 174 --~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 243 (412)
T 1yaa_A 174 --PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVE--------KLSTV 243 (412)
T ss_dssp --CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHH--------HTTTT
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHh--------cCCCC
Confidence 1124455569999999999999999999999999999999999999876654 12223333322 224
Q ss_pred -eEEEEccCccccCCCcceEEEEE--e----cCHH----HHHHHHH-hc-ccccCcHHHHHHHHHHhcCchhh---HHHH
Q 043923 263 -RVHIVYSLSKDLGLPGFRVGAIY--S----NDDM----VVAAATK-MS-SFGLVSSQTQYLLSALLSDKKFT---QNYI 326 (469)
Q Consensus 263 -~~i~i~S~SK~~g~~GlRiG~li--~----~~~~----~~~~~~~-~~-~~~~~s~~~q~~~~~~l~~~~~~---~~~~ 326 (469)
++++++|+||+||++|+|+||++ + .++. +.+.+.. .. .+..++.+.|.++.++|++..+. .+++
T Consensus 244 ~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 323 (412)
T 1yaa_A 244 SPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDM 323 (412)
T ss_dssp CCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHH
Confidence 89999999999997899999998 6 1333 4444433 22 23345789999999999886421 4578
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 327 SENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
++.+++++++++++.+.|++++ +++.++.+|+|+|+.++. +.+..+++++||.+.|
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~--------- 383 (412)
T 1yaa_A 324 VTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVA--------- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCT---------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCH-----------HHHHHHHHhCCEEecc---------
Confidence 8899999999999999999886 888888899999986642 2346777778999986
Q ss_pred CeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 403 GWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 403 ~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++||+++..+++++++++++|+++++.
T Consensus 384 -~~Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 384 -SGRASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp -TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred -CcEEEEccCCHhHHHHHHHHHHHHHHh
Confidence 379999866899999999999999864
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=345.95 Aligned_cols=354 Identities=16% Similarity=0.196 Sum_probs=272.9
Q ss_pred CCeeeeeccccc---cCh-HHHHHHHh--cCCCccccccCCcccccccccC-CCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 38 TGIIQMGLAENQ---LSF-DLLESWLD--RNPDAAGFKRDGQSIFRELALF-QDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 38 ~~~i~L~~~~n~---~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Y-~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.+.|||+.|.+. ++. +.+.+++. +.. ..-.....| ++..|+++||+++|++++ ++
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~Yp~~~~g~~~lr~~ia~~~~--------~~ 86 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVR----------MDGLDLRNYPGGVAGLPSARALFAGYLD--------VK 86 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCE----------ETTEETTSSCSCTTCCHHHHHHHHHHTT--------SC
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHh----------hcchhhhCCCCCCCChHHHHHHHHHHhC--------CC
Confidence 367999999877 332 23444432 210 001234679 788899999999999985 67
Q ss_pred CCcEEEeCChHHHHH--HHHHHhcC--C---------CCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHH
Q 043923 111 TSKIVLTAGATSANE--TLMFCLAE--P---------GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETA 177 (469)
Q Consensus 111 ~~~i~~t~G~~~al~--~~~~~l~~--~---------gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 177 (469)
+++|++|+|+++++. +++.+++. + ||.|+++.|+|..+...+... |.+++.+|++.+ .+|+++
T Consensus 87 ~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~ 162 (423)
T 3ez1_A 87 AENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL-GFELLTVDMQSD---GPDVDA 162 (423)
T ss_dssp GGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH-TCEEEEEEEETT---EECHHH
T ss_pred hhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc-CCEEEeccCCCC---CCCHHH
Confidence 899999999999998 88888877 7 599999999999999998888 999999999753 389999
Q ss_pred HHHHHHHHHhcCCceeEEEE-ecCCCCCCCCCCHHHHHHHHHHH-HhcCeEEEEeccccccccCC---CCccchhhhhhc
Q 043923 178 IEEAYQLAQKRHLKVKGVLV-TNPSNPLGTTMSRNELNLLVNII-TEKNIHLISDEIYSGTVFSS---PGFVSIMEILKD 252 (469)
Q Consensus 178 l~~~i~~~~~~~~~~~~vvl-~~P~NPtG~~~s~e~l~~l~~~~-~~~~~~iI~Deay~~~~~~~---~~~~s~~~~~~~ 252 (469)
+++++++ .+++++|++ ++||||||.+++.+++++|+++| ++||++||+||+|..+.|.+ ....++..+...
T Consensus 163 l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 238 (423)
T 3ez1_A 163 VERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARD 238 (423)
T ss_dssp HHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHH
T ss_pred HHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhc
Confidence 9999851 237888864 48899999999999999999999 99999999999999655544 233455554211
Q ss_pred cccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcC--chhhHHHHHH
Q 043923 253 RNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSD--KKFTQNYISE 328 (469)
Q Consensus 253 ~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~--~~~~~~~~~~ 328 (469)
. +..+++++++||||+ +++|+|+||+++++. +.+.+..... .+.++.+.|.++.+++.+ ..+ .+++++
T Consensus 239 ~-----~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~ 310 (423)
T 3ez1_A 239 A-----GYPDRAFVFASTSKI-TFAGAGLGFVASSED-NIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL-EGLMRD 310 (423)
T ss_dssp H-----TCTTSEEEEEESTTT-SCSSSSCEEEEECHH-HHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH-HHHHHH
T ss_pred c-----CCCCeEEEEeCchhh-ccCCcceEEEEeCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchH-HHHHHH
Confidence 0 145789999999999 569999999999654 4444443332 234788999999999887 444 777888
Q ss_pred HHHHHHHHHHHHHHHHHh----cC--CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC-CCCCCC--
Q 043923 329 NKKRLKQRHRKLVSGLEK----AG--ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP-GSSCHC-- 399 (469)
Q Consensus 329 ~~~~l~~~~~~l~~~L~~----~g--~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p-g~~f~~-- 399 (469)
.++.++++++.+.+.|.+ .+ +.+..+.+|+|+|++++.. +. +.+..+++++||.++| |..|+.
T Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-------~~-~~~~~~l~~~gv~v~~~g~~~~~~~ 382 (423)
T 3ez1_A 311 HAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-------VA-DRVVKLAEAAGVSLTPAGATYPAGQ 382 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-------CH-HHHHHHHHHTTEECCCTTTTSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-------cH-HHHHHHHHHCCcEEecCcccccCCC
Confidence 888888888888777765 44 6777888999999999753 12 2344556678999999 666653
Q ss_pred -CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 400 -TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 400 -~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..++++||+++..+++++++++++|++++++...
T Consensus 383 ~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 383 DPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp CSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2468999999866999999999999999986543
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=333.31 Aligned_cols=326 Identities=18% Similarity=0.255 Sum_probs=261.1
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|||+.|+|+++ ++.+.+++.+. +.....|++..+ .+||+++|++++ +++++|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~ 72 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVEN-------------LNCIRHYPEPDA-GTLRQMLAKRNS--------VDNNAILV 72 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHT-------------GGGGGSCCCTTC-HHHHHHHHHHTT--------CCGGGEEE
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHh-------------HhHHhcCCCCcH-HHHHHHHHHHhC--------cCHHHEEE
Confidence 57899999999986 46677777654 234567888777 999999999985 67899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec-cCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC-TSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
|+|+++++.+++.++. ||+|+++.|+|..+...+... |++++.+|+ +..+++.+ +++++|
T Consensus 73 t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~----------------~~~~~v 133 (350)
T 3fkd_A 73 TNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMY-EHEVCFYPSNEDIGEADF----------------SNMDFC 133 (350)
T ss_dssp ESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHT-TCEEEEEETTSCGGGSCC----------------TTCSEE
T ss_pred cCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHc-CCeEEEEecCCccccCcc----------------CCCCEE
Confidence 9999999999999987 999999999999999888887 999999998 64344332 178999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+++++|++.|.++ +||+||+|.++.+.+.. .. .... ..+++++++|+||++|
T Consensus 134 ~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~--~~-~~~~--------~~~~~i~~~S~sK~~~ 200 (350)
T 3fkd_A 134 WLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVI--RP-ADIK--------GRKNLVMVYSFSHAYG 200 (350)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCC--CG-GGGT--------TCSSEEEEEESHHHHS
T ss_pred EEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcch--hh-HHhh--------cCCCEEEEecCchhcc
Confidence 9999999999999999999999988766 99999999986554432 11 2222 4578999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK-FTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~ 353 (469)
++|+|+||+++ ++.+.+.+......+.++.+.|.++.++|++.. + .+..++.. ++++++.+.|+++ ++++.+
T Consensus 201 ~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~-~~~~~l~~~L~~~~~~~~~~ 274 (350)
T 3fkd_A 201 IPGLRIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQF----TLPIRKWQ-RNTVDFITALNRLDGVEVHP 274 (350)
T ss_dssp CGGGCCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTTT----CCCHHHHH-HHHHHHHHHHHHSTTEEECC
T ss_pred CcchheEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHHH----HHHHHHHH-HHHHHHHHHHhcCCCcEECC
Confidence 99999999999 555666666666666789999999999998765 3 23333333 7788899999988 888766
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+.+ .|+|+.++.. +..++++.|++++||.++||+.|+...++++||+++ +++++++++++|++++++...
T Consensus 275 ~~~-~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~~~~ 344 (350)
T 3fkd_A 275 SGT-TFFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEKYEG 344 (350)
T ss_dssp CSS-SEEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC---
T ss_pred CCC-cEEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHHhcc
Confidence 555 6778888752 234677777765899999999998777889999998 789999999999999988776
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=343.18 Aligned_cols=348 Identities=16% Similarity=0.223 Sum_probs=268.0
Q ss_pred CCeeeeecccc-cc--C---hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCC---
Q 043923 38 TGIIQMGLAEN-QL--S---FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVT--- 108 (469)
Q Consensus 38 ~~~i~L~~~~n-~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~--- 108 (469)
+..|+|++|.+ .. + .+.+.+++...... .......|.+..|.++||+++++++. + ..
T Consensus 49 ~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~---------~~~~~~~Y~~~~G~~~lr~~ia~~l~---g--~~~~~ 114 (448)
T 3meb_A 49 PKKVNLGVGAYRDESGKPWILPAVKEAEAIISSD---------LSKYNKEYPPVAGFPLFLEAAQFLMF---G--KDSKA 114 (448)
T ss_dssp TTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHC---------TTTTCCSCCCTTCCHHHHHHHHHHHH---C--TTCHH
T ss_pred CCeEEeecccccCCCCCEechHHHHHHHHHHhhc---------ccCCCCCCCCCcchHHHHHHHHHHhc---C--CCccc
Confidence 35799999876 32 1 24455542221000 00234578888999999999999983 2 11
Q ss_pred CCCCcEEE--eCChHHHHHH--HHHHhcCCCCEEEEccCCCcChHHHHh----hhCCCEEEEeeccCCC-CcccCHHHHH
Q 043923 109 FDTSKIVL--TAGATSANET--LMFCLAEPGEAFLLPTPYYPGFDRDLK----WRTGVEIVPIQCTSLN-GFQITETAIE 179 (469)
Q Consensus 109 ~~~~~i~~--t~G~~~al~~--~~~~l~~~gd~Vl~~~P~y~~~~~~~~----~~~g~~~~~v~~~~~~-~~~~d~~~l~ 179 (469)
+++++|++ |+|+++++.+ .+.+++.+||+|++++|+|..+...+. .. |++++.+|+...+ +|.+|++.++
T Consensus 115 ~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~-G~~v~~~~~~~~~~~~~~d~e~l~ 193 (448)
T 3meb_A 115 AQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKL-KVPYKEYTYLRKDGELEIDFSNTK 193 (448)
T ss_dssp HHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTT-TSCCEEECCBCTTSCSSBCHHHHH
T ss_pred cCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhC-CCeEEEEeccccccCCCcCHHHHH
Confidence 12689999 9999999987 556677899999999999999998888 77 9999999984333 6889999999
Q ss_pred HHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC--Cccchhhhhhcccccc
Q 043923 180 EAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCEN 257 (469)
Q Consensus 180 ~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~--~~~s~~~~~~~~~~~~ 257 (469)
+++++. ..+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+..
T Consensus 194 ~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~------ 264 (448)
T 3meb_A 194 KDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVD------ 264 (448)
T ss_dssp HHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHH------
T ss_pred HHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhh------
Confidence 998741 12577889999999999999999999999999999999999999998766541 1223333323
Q ss_pred CCcCCeEEEEccCccccCCCcceEEEE--Ee--------cCH----HHHHHHHHh--cccccCcHHHHHHHHHHhcCchh
Q 043923 258 TQVWNRVHIVYSLSKDLGLPGFRVGAI--YS--------NDD----MVVAAATKM--SSFGLVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 258 ~~~~~~~i~i~S~SK~~g~~GlRiG~l--i~--------~~~----~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~ 321 (469)
..+++++++|+||+||++|+|+||+ ++ +++ .+...+... ..+.+++.+.|.++..+|.+..+
T Consensus 265 --~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l 342 (448)
T 3meb_A 265 --AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRL 342 (448)
T ss_dssp --TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHH
T ss_pred --cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHH
Confidence 3478899999999999999999998 66 444 333333332 23334678999999999988643
Q ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHhc---C------CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCe
Q 043923 322 T---QNYISENKKRLKQRHRKLVSGLEKA---G------ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKL 389 (469)
Q Consensus 322 ~---~~~~~~~~~~l~~~~~~l~~~L~~~---g------~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI 389 (469)
. .+++++.+++++++++++.+.|+++ + +++..+++|+|+|+.++. +++..+++++||
T Consensus 343 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~ll~~~gV 411 (448)
T 3meb_A 343 LQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTP-----------EHVDYLKEKWSI 411 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCCH-----------HHHHHHHHhCCE
Confidence 2 3457888999999999999999987 3 566678899999988752 467778888899
Q ss_pred EEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 390 NISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 390 ~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+.||+ .|||++.++++++++++++|++++++.
T Consensus 412 ~v~~G~---------gRis~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 412 YLVKAG---------GRMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp EECSGG---------GEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred EEeCCC---------cEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 999985 299998778888999999999999844
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=344.32 Aligned_cols=357 Identities=20% Similarity=0.261 Sum_probs=264.2
Q ss_pred CCeeeeeccccccCh---HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 38 TGIIQMGLAENQLSF---DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
.++|+|+.+.+...+ +.+.+++.+.... . ........|++..|.++||+++|+++.+.++ +.+++++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i 101 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVES------G-KAADALCNYDGPQGKTALLNALAVLLRETLG--WDIEPQNI 101 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHH------T-HHHHHHHSTTCTTSHHHHHHHHHHHHHHHHC--CCCCGGGE
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhC------C-cccceeeccCCCCCcHHHHHHHHHHHHHHhC--CCCCcccE
Confidence 478999999887744 3344444432100 0 0001234799999999999999999988877 44789999
Q ss_pred EEeCChHHHHHHHHHHhcCCCC-----EEEEc-cCCCcChHHHHhhh-----CCCEEEEeeccCCCCcccCHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLAEPGE-----AFLLP-TPYYPGFDRDLKWR-----TGVEIVPIQCTSLNGFQITETAIEEAYQ 183 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd-----~Vl~~-~P~y~~~~~~~~~~-----~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 183 (469)
++|+|+++|+.+++.+++++|| .|+++ .|+|..+...+... .+..+..++.+. .+|.+|+++++ ++
T Consensus 102 ~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~ 178 (417)
T 3g7q_A 102 ALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IG 178 (417)
T ss_dssp EEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CC
T ss_pred EEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--cc
Confidence 9999999999999999999987 89997 99999887654211 144555555331 25678888887 33
Q ss_pred HHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCe
Q 043923 184 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263 (469)
Q Consensus 184 ~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (469)
+++++|++++||||||.+++.+++++|+++|++||+++|+||+|+.+ +.+..+.. ..+ +..++
T Consensus 179 ------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~---~~~-------~~~~~ 241 (417)
T 3g7q_A 179 ------EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSE---ARP-------LWNPN 241 (417)
T ss_dssp ------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSC---CCC-------CCCTT
T ss_pred ------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccc---ccc-------CCCCC
Confidence 27899999999999999999999999999999999999999999853 22111111 111 13478
Q ss_pred EEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHH-HHHHHHHHHHHH
Q 043923 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISE-NKKRLKQRHRKL 340 (469)
Q Consensus 264 ~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~l 340 (469)
++++.|+|| ++++|+|+||+++++ .+.+.+..... ...++++.|.++.+++.+..+ .++..+ .++.++++++.+
T Consensus 242 ~i~~~s~sK-~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 318 (417)
T 3g7q_A 242 IILCMSLSK-LGLPGSRCGIIIAND-KTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQT 318 (417)
T ss_dssp EEEEEESGG-GTCTTSCCEEEECCH-HHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHH
T ss_pred EEEEEechh-ccCCCcceEEEEeCH-HHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHH
Confidence 999999999 678999999999954 44444443332 233678999999999998876 445444 777888888888
Q ss_pred HHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC-------CCeEEEEe
Q 043923 341 VSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-------PGWFRVCF 409 (469)
Q Consensus 341 ~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~-------~~~iRi~~ 409 (469)
.+.|.+. ++.+..+.+|+|+|++++... .+..+++..+ .++||.+.||+.|+... ++++||++
T Consensus 319 ~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~ 392 (417)
T 3g7q_A 319 IAIIRRYLSEERCLIHKPEGAIFLWLWFKDLP-----ITTELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNY 392 (417)
T ss_dssp HHHHHHHCCTTTCEEECCCBSSEEEEECTTCS-----SCHHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEES
T ss_pred HHHHHHhcccCCceeeCCCcceEEEEEcCCCC-----CCHHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEe
Confidence 8888764 578888899999999998511 1223566665 57799999999887543 57999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 410 ANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 410 ~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+. +++++++++++|++++++..+
T Consensus 393 ~~-~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 393 VP-EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHh
Confidence 96 999999999999999987654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=337.45 Aligned_cols=315 Identities=23% Similarity=0.334 Sum_probs=265.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCC
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGV 158 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~ 158 (469)
...|++..|..+|++++|+++. .+++++|++|+|+++|+..++.+++++||.|+++.|+|..+...+... |+
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~-------~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 127 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYT-------GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSL-GA 127 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSS-------SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHT-TC
T ss_pred CcCCCCCCChHHHHHHHHHHhc-------cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CC
Confidence 3568888899999999999874 257899999999999999999999999999999999999998888877 99
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+++.+|++.+++|.+|++++++++++ ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+
T Consensus 128 ~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 128 EVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred EEEEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 99999998767888999999998864 889999999999999999999999999999999999999999998655
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHh
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALL 316 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l 316 (469)
. ...+..+ ..+++++++|+||++|++|+|+||+++ ++.+.+.+...... .+.+.+.+.++..++
T Consensus 202 ~--~~~~~~~-----------~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (375)
T 3op7_A 202 L--DVPSIIE-----------VYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLAL 267 (375)
T ss_dssp S--CCCCHHH-----------HCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHH
T ss_pred c--CCCchhh-----------hcCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 4 2233332 236789999999999999999999999 55566655554433 235778888888888
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 317 SDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
... .+++++.++.++++++.+.+.|++. ++.+..+.+|+++|+.++... +..+++..+++++||.+.||.
T Consensus 268 ~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~gi~v~~g~ 338 (375)
T 3op7_A 268 AHY---QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM------PMEDFCLQLLQEHGVLLVPGN 338 (375)
T ss_dssp HTH---HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS------CHHHHHHHHHHHHCEECEEGG
T ss_pred hcc---HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC------CHHHHHHHHHHhCCEEEeChh
Confidence 752 5667888889999999999999986 778888888888888886422 234677888778899999999
Q ss_pred CCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 396 SCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 396 ~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.|+. ++++|++++. +++++++++++|++++++..+
T Consensus 339 ~~~~--~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 339 RFER--DGYVRLGFAC-EQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp GGTC--TTEEEECCCS-CHHHHHHHHHHHHHHHGGGC-
T ss_pred hhCC--CCeEEEEecC-CHHHHHHHHHHHHHHHHHHhh
Confidence 8874 7899999985 679999999999999987765
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=367.15 Aligned_cols=354 Identities=17% Similarity=0.222 Sum_probs=283.4
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.+.+.++ ++.+.+++.+... .....|++. ..+|++++++++.+.++ +++++++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~~ 94 (392)
T 3b1d_A 31 PQLLPAWIADMDFEVMPEVKQAIHDYAE------------QLVYGYTYA--SDELLQAVLDWEKSEHQ--YSFDKEDIVF 94 (392)
Confidence 47899999998775 4556666655311 124567765 68999999999987665 3467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
|+|+++++..++.+++++||.|+++.|+|..+...+... |.+++.+|++ .+++|.+|++++++++++. ++++|
T Consensus 95 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v 168 (392)
T 3b1d_A 95 VEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLN-NRKLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLY 168 (392)
Confidence 999999999999999999999999999999999888877 9999999985 3345888999999988631 67889
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+++++|+++|++||++||+||+|.++.+++..+.++..+.++ ..+++++++|+||+||
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-------~~~~~i~~~s~sK~~~ 241 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPD-------FKDFALVLSSATKTFN 241 (392)
Confidence 999999999999999999999999999999999999999887766544455444221 1478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhccc---ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-c-CCc
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-A-GIS 350 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-g~~ 350 (469)
++|+|+||++++++.+.+.+...... ..+++++|.++.++|.+. .+++++.++.++++++.+.+.|++ + +++
T Consensus 242 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 318 (392)
T 3b1d_A 242 IAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEENIQFAVEYFAQEAPRLK 318 (392)
Confidence 99999999999766455544443322 245778888888888753 345788888999999999999987 4 888
Q ss_pred eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 351 CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+.++.+++++|++++... .+..++++.+++++||.+.||..|+...++++||+++. +++++++++++|+++++
T Consensus 319 ~~~~~~~~~~~i~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 319 VMKPQGTYLIWLDFSDYG-----LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 888999999999987420 11235667776678999999999976567899999985 78999999999998875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=341.71 Aligned_cols=344 Identities=15% Similarity=0.207 Sum_probs=264.9
Q ss_pred CCeeeeecccc--c----cChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLAEN--Q----LSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~~n--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
.++|||+.|.. + .+++.+.+++.+.... .....|++..|..+||+++|+++....+ ..+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 92 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-----------ETTKNYLGIDGIPEFGRCTQELLFGKGS--ALIND 92 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCc-----------ccccCCCCCCCCHHHHHHHHHHHhcCCC--Ccccc
Confidence 46899999982 2 2346666666552100 1245788888999999999999964322 11358
Q ss_pred CcEEE--eCChHHHHHHHHHHh--cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 112 SKIVL--TAGATSANETLMFCL--AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 112 ~~i~~--t~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
++|++ |+|+++|+..++.++ +.+||.|+++.|+|..+...+... |.+++.+|++.++++.+|++++++++++.
T Consensus 93 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 169 (396)
T 2q7w_A 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLNEA-- 169 (396)
T ss_dssp TCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred ccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHc-CCceEEEecccCCCCCcCHHHHHHHHHhC--
Confidence 89998 999999999998776 369999999999999999988887 99999999864456789999999988631
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC-CCccchhhhhhccccccCCcCCeEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
.++++++++++|+||||.++|.+++++|+++|++||+++|+||+|.++.+++ ....++..+.. ..+++++
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~ 240 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA--------MHKELIV 240 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH--------HCSCEEE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHh--------cCCcEEE
Confidence 1246788889999999999999999999999999999999999999866542 12233433322 2368999
Q ss_pred EccCccccCCCcceEEEEEe--cCH----HHHHHHHHh--cccccCcHHHHHHHHHHhcCc----hhhHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYS--NDD----MVVAAATKM--SSFGLVSSQTQYLLSALLSDK----KFTQNYISENKKRLK 334 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~--~~~----~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~l~ 334 (469)
++|+||+||++|+|+||+++ +++ .+...+... ..+..++++.|.++.++|++. .+ .+++++.++.++
T Consensus 241 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~-~~~~~~~~~~~~ 319 (396)
T 2q7w_A 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW-EQELTDMRQRIQ 319 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH-HHHHHHC-CHHH
T ss_pred EEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHH-HHHHHHHHHHHH
Confidence 99999999999999999997 333 233333321 233345889999999999875 23 466788889999
Q ss_pred HHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee
Q 043923 335 QRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 410 (469)
Q Consensus 335 ~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~ 410 (469)
++++++.+.|++++ +++.++.+|+|+|+.++. +.+..+++++||.+.|| +||+++
T Consensus 320 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ris~~ 378 (396)
T 2q7w_A 320 RMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVAS----------GRVNVA 378 (396)
T ss_dssp HHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGG
T ss_pred HHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCH-----------HHHHHHHHhcCeeecCC----------ceEEEe
Confidence 99999999999986 788888889999987752 24566677789999874 699998
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 043923 411 NMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 411 ~~~~e~i~~~l~~L~~~l 428 (469)
..+++++++++++|++++
T Consensus 379 ~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 379 GMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp GCCTTTHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHhcC
Confidence 668999999999998763
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=342.31 Aligned_cols=368 Identities=20% Similarity=0.261 Sum_probs=272.7
Q ss_pred CCee-eeeccccccChH---HHHHHHhcCCCcc-ccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 38 TGII-QMGLAENQLSFD---LLESWLDRNPDAA-GFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 38 ~~~i-~L~~~~n~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
+++| +|+.+.+..+++ .+.+++.+..... -.+... ........|++..|.++||+++|+++++.++ +.++++
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~ 107 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANS-SAIISMANYSNPQGDSAFIDALVGFFNRHYD--WNLTSE 107 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCC-HHHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGG
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccc-hhhhhhhccCCCCCCHHHHHHHHHHHHhhcC--CCCCHH
Confidence 4789 999998887653 3344443321000 000000 0001235699889999999999999988877 447899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCC--------------EEEEc-cCCCcChHHH------HhhhCCCEEEEeeccCC-C-
Q 043923 113 KIVLTAGATSANETLMFCLAEPGE--------------AFLLP-TPYYPGFDRD------LKWRTGVEIVPIQCTSL-N- 169 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd--------------~Vl~~-~P~y~~~~~~------~~~~~g~~~~~v~~~~~-~- 169 (469)
+|++|+|+++|+.+++.+++++|| .|+++ .|+|..|... +... |..++.++.+.+ +
T Consensus 108 ~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 186 (444)
T 3if2_A 108 NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAV-LPHIDEVTHDGEEGF 186 (444)
T ss_dssp GEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEEC-CCEEEEEEETTEEEE
T ss_pred HEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhcc-CceEEecccccccCc
Confidence 999999999999999999999988 78775 9999988763 3334 888888888742 2
Q ss_pred -CcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 170 -GFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 170 -~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
+|.+|++++++++... .+++++|++++|+||||.++|.+++++|+++|++||++||+||+|+.+ +....+....
T Consensus 187 ~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~- 261 (444)
T 3if2_A 187 FKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAH- 261 (444)
T ss_dssp EEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCC-
T ss_pred cccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc-cccccccccc-
Confidence 3679999999885421 237899999999999999999999999999999999999999999853 2211111110
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYI 326 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~ 326 (469)
. +..++++++.|+||+ +++|+|+||+++++. +.+.+..... .+.++++.|.++..++....+ .++.
T Consensus 262 --~-------~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~ 329 (444)
T 3if2_A 262 --L-------NWDNNTILCFSLSKI-GLPGMRTGIIVADAK-VIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI-KQLS 329 (444)
T ss_dssp --C-------CCCTTEEEEEESTTT-TCGGGCCEEEECCHH-HHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHH-HHHH
T ss_pred --c-------cCCCCEEEEechhhc-cCCCCceEEEEECHH-HHHHHHHHHHhccCCCChHHHHHHHHHHHcCch-hHHH
Confidence 1 134789999999997 789999999999544 4444433322 234678999999999998776 4444
Q ss_pred HH-HHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC
Q 043923 327 SE-NKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 401 (469)
Q Consensus 327 ~~-~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~ 401 (469)
.+ .++.++++++.+.+.|.+. ++.+..+.+|+|+|+.++... .+..+++..+ .++||.+.||+.|....
T Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l-~~~gi~v~~g~~~~~~~ 403 (444)
T 3if2_A 330 DNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-----ISTLDLYERL-KAKGTLIVPSEYFFPGV 403 (444)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-----SCHHHHHHHH-HHTTEECEEGGGSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-----CCHHHHHHHH-HHCCeEEecchhhcCCC
Confidence 44 6778888888888888763 567777888999999987411 1223566655 57799999999886431
Q ss_pred --------CCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 402 --------PGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 402 --------~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+++||+++. +++++++++++|++++++..+
T Consensus 404 ~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 404 DVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp CCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHHc
Confidence 2689999997 999999999999999987654
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=326.19 Aligned_cols=332 Identities=18% Similarity=0.266 Sum_probs=257.4
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|||+.|+|+++ ++.+.+++.+..... -.....|++. +..+||+++|++++ +++++|+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~y~~~-~~~~lr~~la~~~g--------~~~~~i~ 86 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPD---------GAALRIYPSA-SSQKLREVAGELYG--------FDPSWII 86 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTT---------CGGGGSCCCS-SCHHHHHHHHHHHT--------CCGGGEE
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhcc---------cchhhcCCCC-chHHHHHHHHHHhC--------cCcceEE
Confidence 357999999999986 466777766531100 0114568765 56999999999996 6789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+..++.+++++||.|+++.|+|.++...+... |++++.+|.+. ++.+ ++++++ .+++++
T Consensus 87 ~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~--~~l~~~--------~~~~~v 153 (360)
T 3hdo_A 87 MANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQ-GARVRTFGLTG--DFRI--AGFPER--------YEGKVF 153 (360)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHH-TCEEEEECBCT--TSSB--TTCCSS--------BCSSEE
T ss_pred EcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHC-CCEEEEeeCCC--CCCH--HHHHhh--------cCCCEE
Confidence 9999999999999999999999999999999999988888 99999999864 3444 333322 256789
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.++ +.++|+++|+++|+||+|+++ .+.. ...+.. ..+++++++|+||++|
T Consensus 154 ~i~~p~nptG~~~~~~~---l~~l~~~~~~~li~De~~~~~--~~~~---~~~~~~--------~~~~~i~~~s~sK~~g 217 (360)
T 3hdo_A 154 FLTTPNAPLGPSFPLEY---IDELARRCAGMLVLDETYAEF--AESN---ALELVR--------RHENVVVTRTLSKSYS 217 (360)
T ss_dssp EEESSCTTTCCCCCHHH---HHHHHHHBSSEEEEECTTGGG--SSCC---CTHHHH--------HCSSEEEEEESTTTTS
T ss_pred EEeCCCCCCCCCcCHHH---HHHHHHHCCCEEEEECChHhh--CCcc---hhHHhc--------cCCCEEEEecchHhhc
Confidence 99999999999999887 555667899999999999974 3332 222322 3478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
++|+|+||+++ ++.+.+.+......+..+.+.+.++.++|++.+ ++++.+++++++++++.+.|+++|+++.++.
T Consensus 218 ~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 292 (360)
T 3hdo_A 218 LAGMRIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQA----YLSECCRRIRETREWFTTELRSIGYDVIPSQ 292 (360)
T ss_dssp CTTSCCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHTTCEECCCS
T ss_pred CCccceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCEEcCCC
Confidence 99999999999 455656665555556689999999999998743 4788888999999999999999898887655
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+ .|+|+.++.. +..++.+.+ .++||.++|+.. ...++++||+++ +++++++++++|+++.+...+
T Consensus 293 ~-~~~~~~~~~~-------~~~~l~~~l-~~~gi~v~~~~~--~~~~~~iRis~~--~~~e~~~l~~al~~~~~~~~~ 357 (360)
T 3hdo_A 293 G-NYLFATPPDR-------DGKRVYDGL-YARKVLVRHFSD--PLLAHGMRISIG--TREEMEQTLAALKEIGEGHHH 357 (360)
T ss_dssp S-SEEEEECTTC-------CHHHHHHHH-HHTTEECBCCCS--TTTTTSEEEECC--CHHHHHHHHHHHHHHHC----
T ss_pred c-cEEEEECCCC-------CHHHHHHHH-HHCCEEEEECCC--CCCCCEEEEEcC--CHHHHHHHHHHHHHHhccccc
Confidence 5 6888887631 123556555 467999999875 234689999998 799999999999988776555
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=324.42 Aligned_cols=334 Identities=18% Similarity=0.226 Sum_probs=263.7
Q ss_pred eeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 40 IIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 40 ~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
.|||+.|+|+++ ++.+.+++.+..... ......|++..+ .+|++++|+++++.++ +++++++|++|+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~y~~~~~-~~l~~~la~~l~~~~g--~~~~~~~v~~~~ 99 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKI---------ATELNRYPERDA-VELRDELAAYITKQTG--VAVTRDNLWAAN 99 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHH---------GGGTTSCCCTTC-HHHHHHHHHHHHHHHC--CCCCGGGEEEES
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhc---------ccccccCCCccH-HHHHHHHHHhhhhccc--CCCChHhEEECC
Confidence 399999999875 456666665531100 012457877666 8999999999988776 336789999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~ 198 (469)
|+++++..++.+++++||.|+++.|+|..+...+... |.+++.+|.+ .+|.+|++++++++++. ++++|+++
T Consensus 100 G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~ 171 (369)
T 3cq5_A 100 GSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGT-HTEFIAVSRG--ADFRIDMDVALEEIRAK-----QPDIVFVT 171 (369)
T ss_dssp HHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHT-TCEEEEEECC--TTSSCCHHHHHHHHHHH-----CCSEEEEE
T ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCC--cCCCCCHHHHHHHhhcc-----CCCEEEEe
Confidence 9999999999999999999999999999999888877 9999999976 45778999999998752 67899999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCC-eEEEEccCccccCCC
Q 043923 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN-RVHIVYSLSKDLGLP 277 (469)
Q Consensus 199 ~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~i~i~S~SK~~g~~ 277 (469)
+|+||||.+++.+++.++++ .+++++|+||+|+++.++ .+...+.+ ..+ ++++++|+||++|++
T Consensus 172 ~~~nptG~~~~~~~l~~l~~---~~~~~li~De~~~~~~~~----~~~~~~~~--------~~~~~~i~~~s~sK~~~~~ 236 (369)
T 3cq5_A 172 TPNNPTGDVTSLDDVERIIN---VAPGIVIVDEAYAEFSPS----PSATTLLE--------KYPTKLVVSRTMSKAFDFA 236 (369)
T ss_dssp SSCTTTCCCCCHHHHHHHHH---HCSSEEEEECTTGGGCCS----CCGGGGTT--------TCTTTEEEEEESSSTTSCG
T ss_pred CCCCCCCCCCCHHHHHHHHH---hCCCEEEEECCchhhcCC----cchHHHHh--------hCCCCEEEEEechHhcCCc
Confidence 99999999999888666666 556999999999975432 23333322 335 889999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce
Q 043923 278 GFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 357 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g 357 (469)
|+|+||++++++ +.+.+......+.++.+.+.++.+++.+. +++++.+++++++++++.+.|++.|+++.++. |
T Consensus 237 G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~ 310 (369)
T 3cq5_A 237 GGRLGYFVANPA-FIDAVMLVRLPYHLSALSQAAAIVALRHS----ADTLGTVEKLSVERVRVAARLEELGYAVVPSE-S 310 (369)
T ss_dssp GGCCEEEEECTH-HHHHHHTTSCTTCSCHHHHHHHHHHHHTH----HHHHTHHHHHHHHHHHHHHHHHHHTCEEECCS-S
T ss_pred ccceEEEEeCHH-HHHHHHHcCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCEECCCC-C
Confidence 999999999755 44555544444558889999999998764 34677888899999999999998898887554 5
Q ss_pred EEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 358 LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 358 ~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+|+|++++. +..++.+.+ .++||.+.||. .++++|++++ +++++++++++|+++++.
T Consensus 311 ~~~~~~~~~--------~~~~l~~~l-~~~gi~v~~~~-----~~~~iRis~~--~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 311 NFVFFGDFS--------DQHAAWQAF-LDRGVLIRDVG-----IAGHLRTTIG--VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp SEEEEECCS--------SHHHHHHHH-HHTTEECBCCS-----CTTEEEEECC--CHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCC--------CHHHHHHHH-HHCCEEEEECC-----CCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 788998861 123466665 47799999981 2578999998 799999999999998753
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=339.16 Aligned_cols=344 Identities=18% Similarity=0.224 Sum_probs=249.9
Q ss_pred hhhcCCCCCCCCCCCeeeeeccccccChH-HHHHHHhcCCCccccccCCcccccccccCCCCCCc-----HHHHHHHHHH
Q 043923 25 EYEKNPYDEVQNPTGIIQMGLAENQLSFD-LLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGL-----PAFKKALVEF 98 (469)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~L~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~-----~~Lr~aia~~ 98 (469)
++..-|........++|+|+.+.+.++++ .+.+++.+.... ........|++..|. ++||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~ 80 (391)
T 3bwn_A 9 KPEKISNKNIPMSDFVVNLDHGDPTAYEEYWRKMGDRCTVTI--------RGCDLMSYFSDMTNLCWFLEPELEDAIKDL 80 (391)
T ss_dssp ---------CCTTTSCEECSSCCCGGGHHHHHHTGGGSCEEE--------CTTTTCSSCSCTTSSSTTSCHHHHHHHHHH
T ss_pred CccccCCCCccCCCCeeEcCCCCCCCCCCHHHHHhHHHHhhc--------CccchhhcCCCCCCcccccCHHHHHHHHHH
Confidence 33333433333556789999999887643 344443221000 000134579999998 9999999999
Q ss_pred HHhHcCCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCC----EEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCccc
Q 043923 99 MSEIRGNKVTFDT-SKIVLTAGATSANETLMFCLAEPGE----AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQI 173 (469)
Q Consensus 99 l~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd----~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 173 (469)
++. ++ +.+.+ ++|++|+|+++++..++.+++++|| .|++++|+|..|...++.. |++++.++++.+ ++.
T Consensus 81 ~~~-~g--~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~d~~-~l~- 154 (391)
T 3bwn_A 81 HGV-VG--NAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYV-RSGMYKWEGDAW-GFD- 154 (391)
T ss_dssp HHH-HC--SBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTT-CBTTEEEEEEST-TCC-
T ss_pred HHh-cC--CCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHc-CCeEEEecCCHH-HcC-
Confidence 984 44 44566 6999999999999999999999999 9999999999999998887 999999888742 222
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcc
Q 043923 174 TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 253 (469)
Q Consensus 174 d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~ 253 (469)
. +++++|+++|||||||.+++ +|++.++.++++||+||+|.+ . ...++. .
T Consensus 155 ------~---------~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~--~~~~l~-~---- 204 (391)
T 3bwn_A 155 ------K---------KGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---P--HYTPIT-R---- 204 (391)
T ss_dssp ------C---------CSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---T--TTSCCC-C----
T ss_pred ------C---------CCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---C--CCCccc-c----
Confidence 0 27899999999999999997 344422223399999999972 1 111211 1
Q ss_pred ccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCch-h------hHH
Q 043923 254 NCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKK-F------TQN 324 (469)
Q Consensus 254 ~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~-~------~~~ 324 (469)
..+++++++||||+||++|+|+||++++++.+.+.+..... .++++.+.|.++..+|++.. + ..+
T Consensus 205 ------~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 278 (391)
T 3bwn_A 205 ------RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESEN 278 (391)
T ss_dssp ------CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTS
T ss_pred ------CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHH
Confidence 23789999999999999999999999844455555544433 35588999999999997642 0 145
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCceecC-------------CceEEEEEecccccccCChhHHHHHHHHHHHhCCeE
Q 043923 325 YISENKKRLKQRHRKLVSGLEKA-GISCLKS-------------NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~-------------~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~ 390 (469)
++++.++.++++++.+.+.|+++ ++++..+ .+|+|+|++++.. +.+..+++++||.
T Consensus 279 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----------~~~~~~l~~~gV~ 348 (391)
T 3bwn_A 279 FFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----------TDLVSELRRHKVM 348 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----------CCHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH----------HHHHHHHHHCCEE
Confidence 68889999999999999999987 5555433 4556999998741 1345567788999
Q ss_pred EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 391 ISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
++||+.|+. .++++|||++. +++++++++++|++++++
T Consensus 349 v~pg~~fg~-~~~~iRis~~~-~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 349 SRAGERCGS-DKKHVRVSMLS-REDVFNVFLERLANMKLI 386 (391)
T ss_dssp CEEGGGGTC-CTTEEEEESCS-CHHHHHHHHHHHHSCC--
T ss_pred EccCCCCCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 999999975 56899999996 899999999999988754
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=335.75 Aligned_cols=341 Identities=15% Similarity=0.187 Sum_probs=263.3
Q ss_pred CCeeeeecccc--c----cChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLAEN--Q----LSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~~n--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
.++|||+.|.. + .+++.+.+++.+.... .....|++..|..+||+++|+++... .+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~-----~~~~ 89 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-----------ETTKTYAGLSGEPEFQKAMGELILGD-----GLKS 89 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-----------CCCCCCCCSSCCHHHHHHHHHHHHGG-----GCCG
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCC-----------cccCCCCCCCCcHHHHHHHHHHHhCC-----CCCc
Confidence 46899999983 1 3346677776653100 13457888889999999999998421 1368
Q ss_pred CcEEE--eCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 112 SKIVL--TAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 112 ~~i~~--t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
++|++ |+|+++|+..++.++.. +||.|+++.|+|..+...+... |.+++.+|++.++++.+|++++++++++.
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 166 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAA-- 166 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEECEETTTTEECHHHHHHHHHTC--
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCceEEEecccccCCccCHHHHHHHHHhC--
Confidence 89999 99999999999988754 9999999999999999988887 99999999864456789999999988641
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC-CccchhhhhhccccccCCcCCeEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
.++++++++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++. ...++..+.. ..+++++
T Consensus 167 -~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~ 237 (394)
T 2ay1_A 167 -KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS--------RIPEVLI 237 (394)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH--------HCSSEEE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhh--------cCCCEEE
Confidence 12467778899999999999999999999999999999999999998655421 1223333322 2367899
Q ss_pred EccCccccCCCcceEEEEEe--cCHHH----HHHHHH--hcccccCcHHHHHHHHHHhcCch---hhHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYS--NDDMV----VAAATK--MSSFGLVSSQTQYLLSALLSDKK---FTQNYISENKKRLKQ 335 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~--~~~~~----~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~l~~ 335 (469)
++|+||++|++|+|+||+++ +++.+ ...+.. ...+..++++.|.++.++|++.. ...+++++.++++++
T Consensus 238 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~ 317 (394)
T 2ay1_A 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLR 317 (394)
T ss_dssp EEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 43332 222221 12333358889999999998752 114568888999999
Q ss_pred HHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec
Q 043923 336 RHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 411 (469)
Q Consensus 336 ~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~ 411 (469)
+++++.+.|++++ +++.++.+|+|+|++++. +.+..+++++||.+.|| +|++++.
T Consensus 318 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gi~v~~~----------~Ris~~~ 376 (394)
T 2ay1_A 318 LREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGD----------SRINIAG 376 (394)
T ss_dssp HHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGG
T ss_pred HHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEeec
Confidence 9999999998875 787788888999998752 23566677789999874 5999986
Q ss_pred CCHHHHHHHHHHHHHH
Q 043923 412 MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 412 ~~~e~i~~~l~~L~~~ 427 (469)
.+++++++++++|+++
T Consensus 377 ~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 377 LNDNTIPILARAIIEV 392 (394)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHc
Confidence 6899999999999875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=318.23 Aligned_cols=316 Identities=18% Similarity=0.284 Sum_probs=249.6
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
+.++|+|+.|+++++ ++.+.+++.+.... .....|+.. +..++|+++|+++++. .+++++|+
T Consensus 18 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~-~~~~lr~~la~~~~~~-----~~~~~~v~ 80 (335)
T 1uu1_A 18 KRDKTYLALNENPFPFPEDLVDEVFRRLNS-----------DALRIYYDS-PDEELIEKILSYLDTD-----FLSKNNVS 80 (335)
T ss_dssp CCCSEEESSCCCSSCCCHHHHHHHHHTCCG-----------GGGGSCCCS-SCHHHHHHHHHHHTCS-----SCCGGGEE
T ss_pred CCcceECCCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCCC-chHHHHHHHHHHcCCC-----CCCHHHEE
Confidence 357899999999874 56677777764211 234568754 6899999999999743 25688999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.++ ||.|+++ |+|..+...++.. |++++.+|++ .+|.+|++++ + ++++|
T Consensus 81 ~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l-----~------~~~~v 142 (335)
T 1uu1_A 81 VGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAKAV-GAKFLEVPLT--KDLRIPEVNV-----G------EGDVV 142 (335)
T ss_dssp EESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHHHH-TCEEEECCCC--TTSCCCCCCC-----C------TTEEE
T ss_pred EcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHHHc-CCeEEEeccC--CCCCCCHHHc-----C------CCCEE
Confidence 9999999999999988 8999999 9999999888887 9999999986 3466777776 1 78999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++.+++++|+++| | ++|+||+|+++.+ . +...... ..+++++++|+||+||
T Consensus 143 ~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~--~---~~~~~~~--------~~~~~i~~~s~sK~~g 205 (335)
T 1uu1_A 143 FIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHG--E---SYVDFLK--------KYENLAVIRTFSKAFS 205 (335)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHC--C---CCGGGGG--------TCSSEEEEEESTTTTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcc--h---hHHHHhh--------hCCCEEEEecchhhcC
Confidence 9999999999999999988888877 7 8999999997532 2 2222222 3468899999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
++|+|+||++++ +.+.+.+......++++.+.|.++.++|++. +++++.+++++++++++.+.|+++|+++.++
T Consensus 206 ~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~- 279 (335)
T 1uu1_A 206 LAAQRVGYVVAS-EKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYRITDS- 279 (335)
T ss_dssp CGGGCCEEEEEC-HHHHHHHHHHSCTTCSCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-
T ss_pred CcccCeEEEEeC-HHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHCCcEEcCC-
Confidence 999999999994 5555555555545568899999999999874 3467788888999999999999888876554
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+|+|+|++++. .+..++++.++ ++||.+.|+ ++++|++++ +++++++++++|+++
T Consensus 280 ~~~~~~~~~~~-------~~~~~~~~~l~-~~gi~v~~~-------~~~iRis~~--~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 280 RGNFVFVFMEK-------EEKERLLEHLR-TKNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (335)
T ss_dssp CSSEEEEECCT-------HHHHHHHHHHH-HHTEEEEEE-------TTEEEEECC--CHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCC-------CCHHHHHHHHH-HCCEEEEEC-------CCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 56789999874 12335667666 569999982 468999997 578899999998754
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=299.80 Aligned_cols=344 Identities=13% Similarity=0.064 Sum_probs=256.7
Q ss_pred CCCeeeeecccc-cc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 37 PTGIIQMGLAEN-QL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
..++|||+.|++ .+ +++.+.+++.+.... .......|++..|..++++++++++.+.++ .+++
T Consensus 42 g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~---------~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~~v 106 (398)
T 3a2b_A 42 GRRVLMFGSNSYLGLTTDTRIIKAAQDALEK---------YGTGCAGSRFLNGTLDIHVELEEKLSAYVG------KEAA 106 (398)
T ss_dssp TEEEEECSCSCTTCGGGCHHHHHHHHHHHHH---------HCSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CSEE
T ss_pred CceEEEeecccccCCCCCHHHHHHHHHHHHH---------cCCCCCCcCcccCCcHHHHHHHHHHHHHhC------CCcE
Confidence 456899999987 54 455666665542110 001123466667878999999999888765 3689
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++|+|+++|+..++.+++++||.|+++.|+|..+...+... |++++.+|. +|++++++++++.. ..++++
T Consensus 107 ~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~-g~~~~~v~~-------~d~~~l~~~l~~~~--~~~~~~ 176 (398)
T 3a2b_A 107 ILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLS-FSKVIKYGH-------NNMEDLRAKLSRLP--EDSAKL 176 (398)
T ss_dssp EEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHS-SSEEEEECT-------TCHHHHHHHHHTSC--SSSCEE
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHc-CCceEEeCC-------CCHHHHHHHHHhhc--cCCceE
Confidence 99999999999999999999999999999999999888877 999999985 47899998886421 116889
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCe-EEEEccCccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR-VHIVYSLSKD 273 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~i~i~S~SK~ 273 (469)
|++++|+||||.+++ +++|+++|++||+++|+||+|+.+.++.. ..++.+... ..++ +++++|+||+
T Consensus 177 v~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~--------~~~~~di~~~s~sK~ 244 (398)
T 3a2b_A 177 ICTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK-GAGTASHFG--------LNDDVDLIMGTFSKS 244 (398)
T ss_dssp EEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG-GCCHHHHHT--------CGGGCSEEEEESSST
T ss_pred EEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC-CCchHhhcC--------CCcCCeEEEeccccc
Confidence 999999999999998 56689999999999999999987655321 123333321 2234 6999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHh-c--ccccCcHHHHH-HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKM-S--SFGLVSSQTQY-LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~-~--~~~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
+|++| ||++++++ +.+.+... . .....+++.|. ++.++|+.. +++++.+++++++++++.+.|+++|+
T Consensus 245 ~~~~G---G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~ 316 (398)
T 3a2b_A 245 LASLG---GFVAGDAD-VIDFLKHNARSVMFSASMTPASVASTLKALEII----QNEPEHIEKLWKNTDYAKAQLLDHGF 316 (398)
T ss_dssp TCSSC---EEEEECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HHCTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCC---cEEEeCHH-HHHHHHHhcccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99778 99999644 44444332 2 22234555565 455666542 23567788899999999999999898
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
++.++. |+|+|+.++.. .+..+++..++++ ||.+.||..|... .++++||+++. .+++++++++++|+++
T Consensus 317 ~~~~~~-g~~~~~~~~~~------~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~ 388 (398)
T 3a2b_A 317 DLGATE-SPILPIFIRSN------EKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKV 388 (398)
T ss_dssp CBCSCC-SSEEEEECCCH------HHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CcCCCC-CCEEEEEcCCH------HHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 887766 58999998742 2334677777755 9999999888642 35799999986 4999999999999999
Q ss_pred HHhhcc
Q 043923 428 VDSITT 433 (469)
Q Consensus 428 l~~~~~ 433 (469)
+++..-
T Consensus 389 l~~~~~ 394 (398)
T 3a2b_A 389 FKQAEV 394 (398)
T ss_dssp HHHCC-
T ss_pred HHHhCc
Confidence 976543
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=284.44 Aligned_cols=344 Identities=13% Similarity=0.082 Sum_probs=244.0
Q ss_pred CCCeeeeeccccccC---hHHHHHHHhcCCCccccccCCccccccccc--CCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 37 PTGIIQMGLAENQLS---FDLLESWLDRNPDAAGFKRDGQSIFRELAL--FQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
...+|||+.+ ++++ ++.+.+++.+....... ...... |+...+..+|++.++++++ . +
T Consensus 42 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~~~-------~~~~~~~~~g~~~~~~~l~~~la~~~~--------~-~ 104 (399)
T 3tqx_A 42 EKEVLNFCAN-NYLGLADHPALIKTAQTVVEQYGF-------GMASVRFICGTQTIHKELEKDISEFLG--------T-D 104 (399)
T ss_dssp TEEEEECSSC-CTTSCTTCHHHHHHHHHHHHHHCS-------CCCSCCCCCCCBHHHHHHHHHHHHHHT--------C-S
T ss_pred CeeEEEeecc-CcccccCCHHHHHHHHHHHHHhCC-------CCCCcCccccCchHHHHHHHHHHHHHC--------C-C
Confidence 3468999999 4433 35555555442110000 000111 2233346889999998885 2 3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
+.|++++| ++++..++.+++++||.|+++.|+|..+...+... |.+++.+|. .|++++++.+++....+.+
T Consensus 105 ~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 175 (399)
T 3tqx_A 105 DTILYSSC-FDANGGLFETLLGPEDAIISDELNHASIIDGIRLC-KAQRYRYKN-------NAMGDLEAKLKEADEKGAR 175 (399)
T ss_dssp EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSC-CSEEEEECT-------TCTTHHHHHHHHHHTTTCS
T ss_pred cEEEECch-HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCceeEeCC-------CCHHHHHHHHHhhhccCCC
Confidence 56666655 77999999999999999999999999999988877 999999985 3678899988765433347
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
+++|++++|+||||.+++ +++|+++|++||+++|+||+|+...++.. ..+..+...- ..+.+++++|+|
T Consensus 176 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-------~~~~di~~~s~s 244 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGEN-GRGTPEYCGV-------ADRVDILTGTLG 244 (399)
T ss_dssp SEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT-SCCHHHHHTC-------TTCCSEEEEESS
T ss_pred ceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCchHHhhCC-------CCCCcEEEecch
Confidence 899999999999999999 66799999999999999999963323322 2233333210 125578999999
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHh-ccc---ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKM-SSF---GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
|++| |++.||+++++.. .+.+... ..+ +..+.+.+.++.+.++.. .++.++.+++++++++++.+.|+++
T Consensus 245 K~~~--g~~gG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (399)
T 3tqx_A 245 KALG--GASGGYTSGHKEI-IEWLRNRSRPYLFSNTVAPVIVATSLKVLELL---KTEGPQLRKQLQENSRYFRAGMEKL 318 (399)
T ss_dssp SSSC--SSCCEEEEECHHH-HHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcc--cCceEEEEcCHHH-HHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHc
Confidence 9998 3344999996554 4444332 222 235666666666666432 2446788899999999999999999
Q ss_pred CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHH
Q 043923 348 GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLK 425 (469)
Q Consensus 348 g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-~~~~~~iRi~~~~-~~~e~i~~~l~~L~ 425 (469)
|+++.++.+ .|+|+.++.. .+..+++..+++ +||.+.|+..+. ..+++++|++++. .+++++++++++|+
T Consensus 319 g~~~~~~~~-~~~~~~~~~~------~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 390 (399)
T 3tqx_A 319 GFQLVPGNH-PIIPVMLGDA------QLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFG 390 (399)
T ss_dssp TCCBCCCSS-SEEEEEEECH------HHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCCCC-CEEEEEeCCH------HHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHH
Confidence 998876655 6788888642 233467777765 699999876544 3345799999974 59999999999999
Q ss_pred HHHHhh
Q 043923 426 AFVDSI 431 (469)
Q Consensus 426 ~~l~~~ 431 (469)
+++++.
T Consensus 391 ~~~~~~ 396 (399)
T 3tqx_A 391 QVGKKL 396 (399)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999865
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=283.12 Aligned_cols=341 Identities=13% Similarity=0.105 Sum_probs=242.2
Q ss_pred eeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCCh
Q 043923 41 IQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120 (469)
Q Consensus 41 i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~ 120 (469)
+-|+.+.+..+++.+.+++.+........+. ......|....+..+|+++++++++ +++++|++|+|+
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~ 70 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPN----SAHGMGIEANLHMEKAREKVAKVLG--------VSPSEIFFTSCA 70 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTT----CSSHHHHHHHHHHHHHHHHHHHHHT--------SCGGGEEEESCH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCc----cccHHHHHHHHHHHHHHHHHHHHcC--------CCCCeEEEECCH
Confidence 5667776666666666666553110000000 0001113334567899999999985 567899999999
Q ss_pred HHHHHHHHHHhc----CCCCEEEEccCCCcChHHHH---hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 121 TSANETLMFCLA----EPGEAFLLPTPYYPGFDRDL---KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 121 ~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
++|+..++.++. ++||.|+++.|+|+.+...+ ... |++++.+|.+. ++.+|++++++++++ +++
T Consensus 71 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~ 141 (384)
T 1eg5_A 71 TESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKVKYVPVDS--RGVVKLEELEKLVDE------DTF 141 (384)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT-TCEEEECCBCT--TSCBCHHHHHHHCCT------TEE
T ss_pred HHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhc-CCEEEEEccCC--CCccCHHHHHHHhCC------CCe
Confidence 999999999997 79999999999999886655 555 99999999873 467899999988864 789
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcC--eEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKN--IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~--~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
+|++++|+||||.+++. ++|.++|++|| ++||+||+|+ |+... .++. ..+.++++.|+|
T Consensus 142 ~v~~~~~~nptG~~~~~---~~i~~l~~~~~~~~~li~Dea~~---~~~~~-~~~~------------~~~~di~~~s~s 202 (384)
T 1eg5_A 142 LVSIMAANNEVGTIQPV---EDVTRIVKKKNKETLVHVDAVQT---IGKIP-FSLE------------KLEVDYASFSAH 202 (384)
T ss_dssp EEEEESBCTTTCBBCCH---HHHHHHHHHHCTTCEEEEECTTT---TTTSC-CCCT------------TTCCSEEEEEGG
T ss_pred EEEEECCCCCcccccCH---HHHHHHHHhcCCceEEEEEhhhh---cCCcc-cCch------------hcCCCEEEecHH
Confidence 99999999999999994 56888899999 9999999997 43321 1211 124678899999
Q ss_pred cccCCCcceEEEEEecCHH-HHHHHHH-----hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 272 KDLGLPGFRVGAIYSNDDM-VVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~-~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
|.+|++| +||++++++. +...+.. ....++.+.+.+.++.++|+.. .+++++.+++++++++++.+.|+
T Consensus 203 K~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~ 277 (384)
T 1eg5_A 203 KFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA---VEELSEAAKHMEKLRSKLVSGLM 277 (384)
T ss_dssp GGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhC
Confidence 9999888 7999997653 1211111 0123457788888887777652 34577888899999999999999
Q ss_pred hcCCceecCC---ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-----------------CCCeE
Q 043923 346 KAGISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-----------------EPGWF 405 (469)
Q Consensus 346 ~~g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-----------------~~~~i 405 (469)
+.|+++..+. .+.++++.+++. +..++.+.| .++||.+.+|..|+.. .++++
T Consensus 278 ~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i 349 (384)
T 1eg5_A 278 NLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAI 349 (384)
T ss_dssp TTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEE
T ss_pred CCCeEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHH-hhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeE
Confidence 8888876543 124666766531 123566655 5779999999877532 13689
Q ss_pred EEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 406 RVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 406 Ri~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
||+++. .+++++++++++|++++++.+++
T Consensus 350 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 379 (384)
T 1eg5_A 350 RISLCKYNTEEEVDYFLKKIEEILSFLDLT 379 (384)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999985 48999999999999999887663
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=282.38 Aligned_cols=341 Identities=13% Similarity=0.076 Sum_probs=243.7
Q ss_pred CCCeeeeeccccccC---hHHHHHHHhcCCCccccccCCcccccccccCC--CCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 37 PTGIIQMGLAENQLS---FDLLESWLDRNPDAAGFKRDGQSIFRELALFQ--DYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
...+|||+.+ ++++ ++.+.+++.+..... + .......|+ ...+..+|++++|++++ ++
T Consensus 44 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~-----~--~~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~- 106 (401)
T 1fc4_A 44 GSHVINFCAN-NYLGLANHPDLIAAAKAGMDSH-----G--FGMASVRFICGTQDSHKELEQKLAAFLG--------ME- 106 (401)
T ss_dssp SCEEEECCCS-CTTSCTTCHHHHHHHHHHHHHH-----C--SCCCSCHHHHCCBHHHHHHHHHHHHHHT--------CS-
T ss_pred CccEEEeecc-CcccccCCHHHHHHHHHHHHHh-----C--CCCCCCCcccCCcHHHHHHHHHHHHHhC--------CC-
Confidence 4568999998 5563 466666665521100 0 000011232 24567899999999985 33
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
+.|++++| ++++..++.+++++||.|+++.|+|..+...+... |++++.++. .|++++++.+++....+.+
T Consensus 107 ~~i~~~sG-s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 107 DAILYSSC-FDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN-------NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT-------TCHHHHHHHHHHHHHTTCS
T ss_pred cEEEeCCh-HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHc-CCceEEECC-------CCHHHHHHHHHHhhccCCC
Confidence 56666655 66888899999999999999999998888877776 999998873 3788999988754322226
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc-cccc-CCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS-GTVF-SSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~-~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
+++|++++|+||||.+++ +++|.++|++||+++|+||+|+ ++.+ .+....+...+ ..+.+++++|
T Consensus 178 ~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~----------~~~~di~~~s 244 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV----------MGRVDIITGT 244 (401)
T ss_dssp SEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC----------TTCCSEEEEE
T ss_pred ceEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC----------CcCCcEEEec
Confidence 889999999999999999 6678999999999999999995 6532 22221111222 2245788999
Q ss_pred Ccccc-CCCcceEEEEEecCHHHHHHHHHhc-c---cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043923 270 LSKDL-GLPGFRVGAIYSNDDMVVAAATKMS-S---FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGL 344 (469)
Q Consensus 270 ~SK~~-g~~GlRiG~li~~~~~~~~~~~~~~-~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 344 (469)
+||++ |.+| ||++++ +.+.+.+.... . ....+.+.+.++.+.++.... .++.+++++++++++.+.|
T Consensus 245 ~sK~~~~~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L 316 (401)
T 1fc4_A 245 LGKALGGASG---GYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA----GSELRDRLWANARQFREQM 316 (401)
T ss_dssp SSSTTCSSSC---EEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhccCCCC---EEEEcC-HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHH
Confidence 99999 5554 999995 44444444322 1 124677888888777754221 3567788888999999999
Q ss_pred HhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeec-CCHHHHHHHHH
Q 043923 345 EKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFAN-MSEDTLKLSMQ 422 (469)
Q Consensus 345 ~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~-~~~e~i~~~l~ 422 (469)
+++|+++.+ ..|+|+|++++.. .+..++++.+. ++||.+.+|..|+.. ..+++||+++. .++++++++++
T Consensus 317 ~~~g~~~~~-~~~~~~~~~~~~~------~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 388 (401)
T 1fc4_A 317 SAAGFTLAG-ADHAIIPVMLGDA------VVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVE 388 (401)
T ss_dssp HHTTCCBCC-SSSSEEEEEEECH------HHHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred HHcCCcccC-CCCCEEEEEcCCh------HHHHHHHHHHH-HCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 998888774 4568889988642 22345666666 559999999877643 35689999985 49999999999
Q ss_pred HHHHHHHhhc
Q 043923 423 RLKAFVDSIT 432 (469)
Q Consensus 423 ~L~~~l~~~~ 432 (469)
+|++++++..
T Consensus 389 ~l~~~~~~~~ 398 (401)
T 1fc4_A 389 AFTRIGKQLG 398 (401)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999988653
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=279.77 Aligned_cols=299 Identities=13% Similarity=0.151 Sum_probs=232.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTS-KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (469)
..++++++++++.+.++ ++++ +|++|+|+++|+..++.+++++||.|+++.|+|.. +...+... |++++.+|
T Consensus 65 ~~~~~~~~~~~la~~~g----~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 139 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQ----TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRY-GADVRTIS 139 (393)
T ss_dssp HHHHHHHHHHHHHHHHT----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHc-CCceEEEe
Confidence 46788888888887766 5677 89999999999999999999999999999999998 88777777 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+. ++.+|++++++++++. ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+ ++..+ .
T Consensus 140 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~---~g~~~-~ 205 (393)
T 1vjo_A 140 KPW--GEVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS---LGGVP-I 205 (393)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---TTTSC-C
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc---ccCcC-C
Confidence 874 4678999999998753 6789999999999999998 5568889999999999999998 43221 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh---------------------cccc-
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---------------------SSFG- 302 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~---------------------~~~~- 302 (469)
.+. ..+.++++.|+||+++.+| |+||++++++.+ +.+... ...+
T Consensus 206 ~~~------------~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
T 1vjo_A 206 FLD------------AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAI-EKLQRRRTKVANWYLDMNLLGKYWGSERVYHH 271 (393)
T ss_dssp CTT------------TTTCSEEECCSSSTTCSCS-SCEEEEECHHHH-HHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCS
T ss_pred ccc------------ccCccEEEEcCcccccCCC-ceEEEEECHHHH-HHHhccCCCCCceecCcHhhhhhhccCCCCCC
Confidence 211 2356788999999998777 999999965543 333211 1112
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecccccccCChhHHHHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~---g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
+.+.+.+.++.++++... ..++++.+++++++++++.+.|+++|+++..+.+ +.++++.++... +..++
T Consensus 272 ~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 343 (393)
T 1vjo_A 272 TAPINLYYALREALRLIA--QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGV------DGKAV 343 (393)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTC------CHHHH
T ss_pred CCCHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCC------CHHHH
Confidence 567788888888776421 3346778889999999999999988888877654 357788876321 23356
Q ss_pred HHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHH
Q 043923 380 WKKIVYDVKLNISPGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~-~~~e~i~~~l~~L~~~l~ 429 (469)
++.+++++||.+.||..|. .++++||++ +. .+++++++++++|+++++
T Consensus 344 ~~~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 344 ARRLLNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp HHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 7777765699999998764 367999995 32 367789999999998863
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=273.15 Aligned_cols=301 Identities=13% Similarity=0.154 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEeec
Q 043923 89 PAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~~ 165 (469)
.++++++++++.+.+| ++ ++++++|+|+++|+..++.+++++||.|+++.|+|.+ +...+... |++++.++.
T Consensus 52 ~~~~~~~~~~la~~~g----~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 126 (386)
T 2dr1_A 52 RKVHMDTVERLREFLE----VEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESN-GRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHHHHHT----CSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhC----CCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHh-CCceEEEec
Confidence 6788888888877766 33 6789999999999999999999999999999999987 77777776 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
+. ++.+|++++++++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+||+|+.+.+. .+
T Consensus 127 ~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~----~~ 193 (386)
T 2dr1_A 127 EP--GKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD----IK 193 (386)
T ss_dssp CT--TCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC----CC
T ss_pred CC--CCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc----cc
Confidence 74 567899999999863 237899999999999999988 566899999999999999999853221 12
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH---------------HHH----hcccccCcH
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA---------------ATK----MSSFGLVSS 306 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~---------------~~~----~~~~~~~s~ 306 (469)
+. ..+.++++.|+||+++.+ .++||++++++.+... ... ....++.+.
T Consensus 194 ~~------------~~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (386)
T 2dr1_A 194 FD------------KWGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPM 260 (386)
T ss_dssp TT------------TTTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCH
T ss_pred cc------------ccCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCH
Confidence 11 225678999999999855 2499999965543322 011 122345677
Q ss_pred HHHHHHHHHhcCchhhHHH--HHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecccccccCChhHHHHHHH
Q 043923 307 QTQYLLSALLSDKKFTQNY--ISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
+.+.++.++|+.. .+. +++.+++++++++++.+.|+++|+++..+. .++++|+.++... +..++++
T Consensus 261 ~~~~a~~~~l~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 331 (386)
T 2dr1_A 261 PQVFGINVALRII---EKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGI------KGDEVYE 331 (386)
T ss_dssp HHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTC------CHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCC------CHHHHHH
Confidence 8888887777542 222 567788899999999999998888877664 3678899887321 2335677
Q ss_pred HHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 382 KIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.|+++ ||.+.||..+. .++++||+++. .+++++++++++|++++++..
T Consensus 332 ~l~~~-gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 332 AMRKR-GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp HHHHT-TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHC-CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 77655 99999998653 35799999986 599999999999999987654
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=282.06 Aligned_cols=342 Identities=14% Similarity=0.140 Sum_probs=243.4
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCC--CCCcHHHHHHHHHHHHhHcCCCCCC-CCCcE
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD--YHGLPAFKKALVEFMSEIRGNKVTF-DTSKI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~Lr~aia~~l~~~~~~~~~~-~~~~i 114 (469)
.++|+|+.+.+..+++.+.+++.+...... + ........|++ ..+..++++++|++++ . ++++|
T Consensus 27 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~----~-~~~~~~~~y~~~~~~~~~~l~~~la~~~~--------~~~~~~v 93 (420)
T 1t3i_A 27 HPLVYLDNAATSQKPRAVLEKLMHYYENDN----A-NVHRGAHQLSVRATDAYEAVRNKVAKFIN--------ARSPREI 93 (420)
T ss_dssp EECEECBTTTCCCCCHHHHHHHHHHHHHTC----C-CC--CCSHHHHHHHHHHHHHHHHHHHHTT--------CSCGGGE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhcc----C-CCCcccchHHHHHHHHHHHHHHHHHHHcC--------CCCCCeE
Confidence 358999999888656666666655311000 0 00001233543 3567899999999986 3 57899
Q ss_pred EEeCChHHHHHHHHHHh----cCCCCEEEEccCCCcC----hHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCL----AEPGEAFLLPTPYYPG----FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
++|+|+++|+..++.++ +++||.|+++.|+|.. +...+... |++++.++.+ .++.+|++++++++++
T Consensus 94 ~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~l~~-- 168 (420)
T 1t3i_A 94 VYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GAVLKFVQLD--EQESFDLEHFKTLLSE-- 168 (420)
T ss_dssp EEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CCEEEEECBC--TTSSBCHHHHHHHCCT--
T ss_pred EEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhc-CcEEEEeccC--CCCCcCHHHHHHhhCC--
Confidence 99999999999999999 8999999999999998 44555566 9999999987 4567899999998864
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++++|++++|+||||.+++ +++|.++|++||+++|+||+|+.. ... .++..+ +.+++
T Consensus 169 ----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~~~-~~~~~~------------~~di~ 225 (420)
T 1t3i_A 169 ----KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAP---HYP-LDVQLI------------DCDWL 225 (420)
T ss_dssp ----TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCHHHH------------TCSEE
T ss_pred ----CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccC---Ccc-Cchhhc------------CCCEE
Confidence 7899999999999999999 666899999999999999999842 111 122222 46788
Q ss_pred EccCccccCCCcceEEEEEecCHHHHHHHHHhcc---------------------c-ccCcHHHHHHHHH-HhcCchhhH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS---------------------F-GLVSSQTQYLLSA-LLSDKKFTQ 323 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~---------------------~-~~~s~~~q~~~~~-~l~~~~~~~ 323 (469)
+.|+||.+|.+| +||+++++ .+.+.+..... + ...+.+.+.++.. +++... .
T Consensus 226 ~~s~sK~~~~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~ 300 (420)
T 1t3i_A 226 VASGHKMCAPTG--IGFLYGKE-EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT--D 300 (420)
T ss_dssp EEEGGGTTSCTT--CEEEEECH-HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--H
T ss_pred EEehhhhcCCCc--eEEEEEch-HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH--H
Confidence 899999998777 99999964 44443332221 1 1234455554332 332211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC-----ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKA-GISCLKSN-----AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC 397 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~-----~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f 397 (469)
..+++.+++++++++++.+.|+++ |+++..+. .+.++++.++. . +..++.+ .+.++||.+.||..|
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~-~l~~~gi~v~~~~~~ 372 (420)
T 1t3i_A 301 LGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG-L------HASDVAT-MVDQDGIAIRSGHHC 372 (420)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT-B------CHHHHHH-HHHTTTEECBCSCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECC-C------CHHHHHH-HHHHCCeEEeecccc
Confidence 135677788888999999999988 88887664 24455566753 1 1224554 456789999999655
Q ss_pred CC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 398 HC------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 398 ~~------~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.. ..++++||+++. .+++++++++++|+++++..++
T Consensus 373 ~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 373 TQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred chHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 32 116789999986 4899999999999999987655
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=277.63 Aligned_cols=336 Identities=10% Similarity=0.089 Sum_probs=238.6
Q ss_pred CCCeeeeecccc-cc-ChHHHHHHHhcCCCccccccCCcccccccccC--CCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAEN-QL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALF--QDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+|||+.++| .+ +++.+.+++.+..... + .......| +...+..+|+++++++++ + ++
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~-----~--~~~~~~~~~~g~~~~~~~l~~~la~~~g--------~-~~ 101 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQF-----G--IGSGGSGHVSGYSVVHQALEEELAEWLG--------Y-SR 101 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHH-----C--SCCCSBTTTTCCCHHHHHHHHHHHHHHT--------C-SE
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHh-----C--CCCCCcCcccCChHHHHHHHHHHHHHhC--------C-Cc
Confidence 446899999986 43 4455666655431100 0 00011233 334678899999999985 3 35
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
.|++++| ++++..++.+++++||.|+++.|+|..+...+... |++++.+|. .|++++++.+++. .+++
T Consensus 102 ~i~~~sG-t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~---~~~~ 169 (384)
T 1bs0_A 102 ALLFISG-FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFAH-------NDVTHLARLLASP---CPGQ 169 (384)
T ss_dssp EEEESCH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEECT-------TCHHHHHHHHHSC---CSSC
T ss_pred EEEeCCc-HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHc-CCCEEEeCC-------CCHHHHHHHHHhc---CCCC
Confidence 5556555 89999999999999999999999999998888877 999999884 3788898888641 1137
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|++++|+||||.+++ +++|+++|++||++||+||+|+.+.++... .++..... .+..++++|+||
T Consensus 170 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~---------~~~di~~~s~sK 236 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGSCWLQK---------VKPELLVVTFGK 236 (384)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCHHHHTT---------CCCSEEEEESSS
T ss_pred eEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCC-CchHHhcC---------CCCcEEEeeccc
Confidence 88899999999999999 566899999999999999999865433111 12222211 123488999999
Q ss_pred ccCCCcceEEEEEecCHHHHHHHHHhc-cc---ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043923 273 DLGLPGFRVGAIYSNDDMVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG 348 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g 348 (469)
++|.+| ||+++++ .+.+.+.... .+ ...+.+.+.++.++++... ..+.++.+++++++++++.+.|+++|
T Consensus 237 ~~~~~G---G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g 310 (384)
T 1bs0_A 237 GFGVSG---AAVLCSS-TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--SDEGDARREKLAALITRFRAGVQDLP 310 (384)
T ss_dssp TTSSCC---EEEEECH-HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhccC---cEEEeCH-HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 999777 9999964 4444443321 22 1367777777777765322 00456778889999999999999988
Q ss_pred CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 043923 349 ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 349 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-~~~~~iRi~~~~-~~~e~i~~~l~~L~~ 426 (469)
+++.+ ..++++|+.++.. .+..++++.+++ +||.+.||..|+. .+.+++||+++. .+++++++++++|++
T Consensus 311 ~~~~~-~~~~~~~~~~~~~------~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~ 382 (384)
T 1bs0_A 311 FTLAD-SCSAIQPLIVGDN------SRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHG 382 (384)
T ss_dssp CEECS-CCSSBCCEEEESH------HHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred CcccC-CCCCEEEEEeCCH------HHHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHh
Confidence 88775 4457778887632 223456777664 5999999987753 235799999985 389999999999987
Q ss_pred H
Q 043923 427 F 427 (469)
Q Consensus 427 ~ 427 (469)
+
T Consensus 383 ~ 383 (384)
T 1bs0_A 383 N 383 (384)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=274.63 Aligned_cols=299 Identities=14% Similarity=0.150 Sum_probs=227.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTS-KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (469)
..++++++|++++ .+++ +|++|+|+++++..++.+++++||.|+++.|+|..+. ..+... |++++.++
T Consensus 53 ~~~l~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 123 (396)
T 2ch1_A 53 MDEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIE 123 (396)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHc-CCceEEec
Confidence 6889999999986 4667 8999999999999999999999999999999999884 355666 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+. ++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|+++|++||+||+|+ ++... .
T Consensus 124 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~---~g~~~-~ 189 (396)
T 2ch1_A 124 GPP--DRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS---LCGVP-F 189 (396)
T ss_dssp CCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTBC-C
T ss_pred CCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc---ccCCc-c
Confidence 874 5678999999998753 6889999999999999999 5568889999999999999998 33221 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-------------------------c
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-------------------------S 299 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-------------------------~ 299 (469)
.+. ..+..+++.|++|.++ ++.++|++++++. +.+.+... .
T Consensus 190 ~~~------------~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
T 2ch1_A 190 YMD------------KWEIDAVYTGAQKVLG-APPGITPISISPK-ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKR 255 (396)
T ss_dssp CTT------------TTTCCEEECCCC-CCC-CCSSCEEEEECHH-HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCC
T ss_pred chh------------hcCcCEEEEcCCcccc-CCCCeEEEEECHH-HHHhhhhccCcccceEechHHHHHhhhhhcccCC
Confidence 211 1234566789999875 4456699999654 33333211 0
Q ss_pred ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce----EEEEEecccccccCChhH
Q 043923 300 SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG----LFCWVDMRHLLRSNTFEA 375 (469)
Q Consensus 300 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g----~~~~v~~~~~~~~~~~~~ 375 (469)
..++.+...+.++.+++.... .+++++.+++++++++++.+.|+++|+++.++.++ .++++.++... +
T Consensus 256 ~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~ 327 (396)
T 2ch1_A 256 YHHTVASNLIFALREALAQIA--EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV------D 327 (396)
T ss_dssp CCCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC------C
T ss_pred CCCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCC------C
Confidence 123456677777777775421 33467788889999999999999889888776653 47888886321 2
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 376 EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 376 ~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..++.+.|++++||.+++|..+. .++++||++ +. .+++++++++++|++++++.+.
T Consensus 328 ~~~~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 328 WWKVSQYAMNNFSLEVQGGLGPT--FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp HHHHHHHHHHHHCBCCBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCEEEecCcccc--CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 33577777766799999987542 467999999 43 4899999999999999987654
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=274.86 Aligned_cols=340 Identities=12% Similarity=0.110 Sum_probs=239.9
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC-CCCcEEEe
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF-DTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~-~~~~i~~t 117 (469)
++|.|+.+.+...++.+.+++.+........+ ........|.+..+..++++++|++++ . ++++|++|
T Consensus 23 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~~v~~~ 91 (406)
T 1kmj_A 23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAV---HRGIHTLSAQATEKMENVRKRASLFIN--------ARSAEELVFV 91 (406)
T ss_dssp ECEECCTTTCCCCCHHHHHHHHHHHHHTCCCC---SSCSSHHHHHHHHHHHHHHHHHHHHTT--------CSCGGGEEEE
T ss_pred ceEEecCCccCCCCHHHHHHHHHHHHhhcCCC---CCCcchHHHHHHHHHHHHHHHHHHHcC--------CCCCCeEEEe
Confidence 57999998887655666666654311000000 000000113344567899999999986 3 57899999
Q ss_pred CChHHHHHHHHHHh----cCCCCEEEEccCCCcChH----HHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 118 AGATSANETLMFCL----AEPGEAFLLPTPYYPGFD----RDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 118 ~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+|+++|+..++.++ +++||.|+++.|+|.+.. ..+... |++++.+|.+. ++.+|++++++++++
T Consensus 92 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~----- 163 (406)
T 1kmj_A 92 RGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-GAELRVIPLNP--DGTLQLETLPTLFDE----- 163 (406)
T ss_dssp SSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-TCEEEEECBCT--TSCBCGGGHHHHCCT-----
T ss_pred CChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhC-CCEEEEEecCC--CCCcCHHHHHHHhcc-----
Confidence 99999999999999 899999999999987643 334556 99999999873 567899999998864
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
++++|++++|+||||.+++ +++|.++|++||+++|+||+|+.. ... .++.. .+.++++.|
T Consensus 164 -~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g---~~~-~~~~~------------~~~d~~~~s 223 (406)
T 1kmj_A 164 -KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVM---HHP-VDVQA------------LDCDFYVFS 223 (406)
T ss_dssp -TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCHHH------------HTCSEEEEE
T ss_pred -CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcC---CCC-Ccccc------------cCCCEEEEE
Confidence 7899999999999999999 667899999999999999999842 111 12221 256788999
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhcc----------------------c-ccCcHHHHHHHH-HHhcCchhhHHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMSS----------------------F-GLVSSQTQYLLS-ALLSDKKFTQNY 325 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~----------------------~-~~~s~~~q~~~~-~~l~~~~~~~~~ 325 (469)
+||.+|.+| +||++++ +.+.+.+..... + ...+.+.+.++. ++++... ..+
T Consensus 224 ~~K~~g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~ 298 (406)
T 1kmj_A 224 GHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS--ALG 298 (406)
T ss_dssp GGGTTSCTT--CEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHC
T ss_pred chhccCCCC--cEEEEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH--HcC
Confidence 999999888 8999995 444443332211 1 113445554433 3443211 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCceecC--CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC---
Q 043923 326 ISENKKRLKQRHRKLVSGLEKA-GISCLKS--NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--- 399 (469)
Q Consensus 326 ~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~--~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--- 399 (469)
+++.+++++++++++.+.|+++ |+++.++ .++++. +.++.. +..++.+ .+.++||.+.||..|..
T Consensus 299 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~-~l~~~gi~v~~g~~~~~~~~ 369 (406)
T 1kmj_A 299 LNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA-FNLGKH-------HAYDVGS-FLDNYGIAVRTGHHCAMPLM 369 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEE-EEETTC-------CHHHHHH-HHHHTTEECEEECTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEE-EEECCC-------CHHHHHH-HHhhCCcEEEeccccchHHH
Confidence 5677788888999999999988 8888877 666555 456521 1234554 44677999999986531
Q ss_pred ---CCCCeEEEEeecC-CHHHHHHHHHHHHHHHHhh
Q 043923 400 ---TEPGWFRVCFANM-SEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 400 ---~~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~ 431 (469)
..++++||+++.. +++++++++++|+++++..
T Consensus 370 ~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 370 AYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 1257999999864 9999999999999998754
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=267.49 Aligned_cols=337 Identities=16% Similarity=0.115 Sum_probs=240.4
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.+++|+|+.+.+..+++.+.+++.+. ...|+...|..++++++++++.+.++ .++++|++
T Consensus 12 ~p~~i~l~~~~~~~~~~~v~~a~~~~----------------~~~~~~~~g~~~~~~~~~~~l~~~~g----~~~~~v~~ 71 (359)
T 1svv_A 12 KPKPYSFVNDYSVGMHPKILDLMARD----------------NMTQHAGYGQDSHCAKAARLIGELLE----RPDADVHF 71 (359)
T ss_dssp ---CEECSCSCSSCCCHHHHHHHHHH----------------TTCCCCSTTCSHHHHHHHHHHHHHHT----CTTSEEEE
T ss_pred CCeeEEecCCCcCCCCHHHHHHHHHH----------------HhhccccccccHHHHHHHHHHHHHhC----CCCccEEE
Confidence 34689999988886677777777653 12466666778899999999888776 57889999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH--HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH-hcCCcee
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR--DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ-KRHLKVK 193 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~ 193 (469)
|+|+++|+..++.+++++||.|+++.|+|..+.. .+... |++++.+|.+ ++.+|++++++++++.. ..+.+++
T Consensus 72 ~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~ 147 (359)
T 1svv_A 72 ISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEAT-GHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPK 147 (359)
T ss_dssp ESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT-TCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEE
T ss_pred eCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcC-CCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCce
Confidence 9999999999999999999999999999998876 36666 9999999975 56799999999997610 0112489
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc-cchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF-VSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
+|++++| ||||.+++.+++++|+++|++||+++|+||+|.++.++..+. .....+ . ....+++.|.+|
T Consensus 148 ~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~---------~~~d~~~~s~~K 216 (359)
T 1svv_A 148 LVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI-A---------RLTDMFYIGATK 216 (359)
T ss_dssp EEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH-H---------HHCSEEEEECTT
T ss_pred EEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhh-h---------hcCCEEEEeccc
Confidence 9999999 799999999999999999999999999999995432232111 111111 0 022366779999
Q ss_pred ccCCCcceEEEEEecCHHHHHHHHHh---cccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043923 273 DLGLPGFRVGAIYSNDDMVVAAATKM---SSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG 348 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~~~~~~~~~~---~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g 348 (469)
..+ ..++|+++++++.+.. +... .... ..+......+.+++.+.. +++.+++++++++++.+.|+..|
T Consensus 217 ~g~--~~~~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~ 288 (359)
T 1svv_A 217 AGG--MFGEALIILNDALKPN-ARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGAHSNKMAAILKAGLEACG 288 (359)
T ss_dssp TTC--SSCEEEEECSGGGCTT-HHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC--CCceEEEEEcccHHHH-HHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhccCC
Confidence 743 3568999986544322 2221 1111 112223333445565532 35677788888999999995558
Q ss_pred CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 349 ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 349 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
+++..+.+++|+|++++. ++++.+++++||.+.+.. ...++++|++++. .+++++++++++|+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 354 (359)
T 1svv_A 289 IRLAWPSASNQLFPILEN-----------TMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRL 354 (359)
T ss_dssp CCBSSCCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred eEEccCCccceEEEEcCH-----------HHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHHH
Confidence 888877888999987752 466666655599983211 1235689999875 4899999999999988
Q ss_pred HHh
Q 043923 428 VDS 430 (469)
Q Consensus 428 l~~ 430 (469)
+++
T Consensus 355 ~~~ 357 (359)
T 1svv_A 355 VAS 357 (359)
T ss_dssp ---
T ss_pred Hhc
Confidence 754
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=280.38 Aligned_cols=334 Identities=16% Similarity=0.167 Sum_probs=235.5
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCC-CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD-YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
+.|.|+.+....+++.+.+++.+....... . + ......|+. ..+..+|+++++++++ +++++|++|
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~-~-~---~~~~~~y~~~~~~~~~l~~~la~~~g--------~~~~~v~~~ 82 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQE-N-G---PFSIAANQHIQQLIAQLRQALAETFN--------VDPNTITIT 82 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHH-H-C---SSSHHHHHHHHHHHHHHHHHHHHHTT--------SCGGGEEEE
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHhc-c-C---CcchhhHHHHHHHHHHHHHHHHHHcC--------CCHHHEEEe
Confidence 578888877554555666666553110000 0 0 000114554 3567899999999985 567899999
Q ss_pred CChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHH----HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 118 AGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 118 ~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|+++|+..++.++ +++||+|+++.|+|..+... ++.. |++++.++.+...++.+|++++++++++ ++
T Consensus 83 ~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~ 155 (390)
T 1elu_A 83 DNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARF-GITYRFFPVAATLNQGDAAAVLANHLGP------KT 155 (390)
T ss_dssp SSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHH-CCEEEEECCGGGSSSSCHHHHHHTTCCT------TE
T ss_pred CChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHh-CcEEEEEcCCCCCCccchHHHHHHhcCC------Cc
Confidence 99999999999999 89999999999999987643 3455 9999999986434677899999988764 78
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHH----hcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIIT----EKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY 268 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~----~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~ 268 (469)
++|++++|+||||.+++ +++|.++|+ +||+++|+||+|+ ++... .. + . ..+.++++.
T Consensus 156 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~---~g~~~-~~---~-~--------~~~~d~~~~ 216 (390)
T 1elu_A 156 RLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQS---AGSLP-LD---F-S--------RLEVDYYAF 216 (390)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTT---BTTBC-CC---T-T--------TSCCSEEEE
T ss_pred eEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccc---cCCcC-CC---h-h--------hcCCCEEEc
Confidence 99999999999999999 566888999 9999999999998 32211 11 1 1 225678899
Q ss_pred cCccccCCCcceEEEEEecCHHHHHHHHH------------------------hcccccCcHHHHHHHHHHhcCchhhHH
Q 043923 269 SLSKDLGLPGFRVGAIYSNDDMVVAAATK------------------------MSSFGLVSSQTQYLLSALLSDKKFTQN 324 (469)
Q Consensus 269 S~SK~~g~~GlRiG~li~~~~~~~~~~~~------------------------~~~~~~~s~~~q~~~~~~l~~~~~~~~ 324 (469)
|+||.++ +|.++||++++++.+ +.+.. ....++.+.+.+.++.+++..... ..
T Consensus 217 s~~K~~~-~~~g~G~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~-~~ 293 (390)
T 1elu_A 217 TGHKWFA-GPAGVGGLYIHGDCL-GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR-QG 293 (390)
T ss_dssp ESSSTTC-CCTTCEEEEECTTTG-GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH-HC
T ss_pred ccccccc-CCCceEEEEECHHhH-hhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHH-cC
Confidence 9999543 667799999975433 22211 011234555666655555542111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCceec---CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 325 YISENKKRLKQRHRKLVSGLEKA-GISCLK---SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~---~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
++++.+++++++++++.+.|+++ |+++.. +.+++ ++++++... +..++.+.|. ++||.+.+|.
T Consensus 294 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~l~-~~gi~v~~~~----- 360 (390)
T 1elu_A 294 TAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGL-VSFTVDSPL------GHRAIVQKLE-EQRIYLRTIA----- 360 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSE-EEEEECSSS------CHHHHHHHHH-HTTEECEEET-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccE-EEEEcCCCC------CHHHHHHHHH-HCCEEEEecC-----
Confidence 36778888999999999999987 888774 34554 445775321 1235666664 6799999886
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 401 EPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 401 ~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
.++++||+++. .+++++++++++|+++
T Consensus 361 ~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 35789999954 5999999999998753
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=276.49 Aligned_cols=340 Identities=16% Similarity=0.149 Sum_probs=236.5
Q ss_pred CCeeeeecccccc-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHH-HHHHHHhHcCCCCCCCCCcEE
Q 043923 38 TGIIQMGLAENQL-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKA-LVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~a-ia~~l~~~~~~~~~~~~~~i~ 115 (469)
+++|.|+.+.+.. +++.+.+++.+..........+ . .....|.+..+..++++. ++++++ .+ +|+
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~la~~~~--------~~--~v~ 73 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFC-T--TGRLDEIKTPPIHDFIHNQLPKFLG--------CD--VAR 73 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC-----------------------CCHHHHHHTHHHHHTT--------SS--EEE
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCcc-c--cccchhhHHHHHHHHHHHHHHHHcC--------CC--EEE
Confidence 3578888865443 3566677766642210000000 0 001234456788999999 999986 33 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEee--ccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ--CTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
+|+|+++|+..++.+++++||.|+++.|+|..+...+... |++++.++ .+ .++.+|++++++++++.... ++++
T Consensus 74 ~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~-~~~~ 149 (371)
T 2e7j_A 74 VTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNIALVPKTDY--PDYAITPENFAQTIEETKKR-GEVV 149 (371)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEEEEECCCCT--TTCCCCHHHHHHHHHHHTTT-SCEE
T ss_pred EeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHc-CCeEEEeecccC--CCCCcCHHHHHHHHHhhccc-CCeE
Confidence 9999999999999999999999999999999998888877 99999999 65 35779999999999743111 3789
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|++++|+||||.+++. ++|.++|++||+++|+||+|+...+. .++..+ +..+++.|+||+
T Consensus 150 ~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~------------~~di~~~s~sK~ 210 (371)
T 2e7j_A 150 LALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMP----VSLKEI------------GADFIVGSGHKS 210 (371)
T ss_dssp EEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBC----CCHHHH------------TCSEEEEEHHHH
T ss_pred EEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCC----CChhhc------------CCCEEEecCCcC
Confidence 99999999999999995 66888999999999999999853221 222222 345889999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcc---------cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHH--HHHHHHHHH
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSS---------FGLVSSQTQYLLSALLSDKKFTQNYISENKKRL--KQRHRKLVS 342 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~---------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l--~~~~~~l~~ 342 (469)
++ ++.|+||++++++.+...+..... .+..+...+.++.+++... .. +.++++ +++++++.+
T Consensus 211 ~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~---~~~~~~~~~~~~~~l~~ 283 (371)
T 2e7j_A 211 MA-ASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV---RE---RIKRWDEEVEKARRFAA 283 (371)
T ss_dssp SS-CCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH---HH---HGGGHHHHHHHHHHHHH
T ss_pred CC-CCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHH
Confidence 98 455999999976543220222221 2334445454444444321 11 445566 778888999
Q ss_pred HHHhcCCceecCC--ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC----CCCCeEE-EEeec--CC
Q 043923 343 GLEKAGISCLKSN--AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC----TEPGWFR-VCFAN--MS 413 (469)
Q Consensus 343 ~L~~~g~~v~~~~--~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~----~~~~~iR-i~~~~--~~ 413 (469)
.|+++|+++..+. .+.++|++++ +..++.+.+. ++||.+.| ..|.. ..++++| ++++. .+
T Consensus 284 ~L~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~ 352 (371)
T 2e7j_A 284 EMEKLGIKQLGDNPHNHDLMFFHAE---------VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLS 352 (371)
T ss_dssp HHHHTTCEEESSSSCCSSEEEEECH---------HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCC
T ss_pred HHHHcCcEEecCCCccCceEEEECC---------CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCC
Confidence 9988888887663 3568999886 1224556555 77999988 43322 1267899 99985 48
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 043923 414 EDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 414 ~e~i~~~l~~L~~~l~~~ 431 (469)
++++++++++|++++++.
T Consensus 353 ~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 353 DEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998753
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=269.73 Aligned_cols=332 Identities=14% Similarity=0.029 Sum_probs=236.0
Q ss_pred eeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCCh
Q 043923 41 IQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA 120 (469)
Q Consensus 41 i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~ 120 (469)
+-|+.+.+..+++.+.+++.+... ....|....++.++++++|++++ +++++|++|+|+
T Consensus 10 ~yl~~~~~~~~~~~v~~a~~~~~~-------------~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v~~t~g~ 68 (392)
T 2z9v_A 10 VITLTAGPVNAYPEVLRGLGRTVL-------------YDYDPAFQLLYEKVVDKAQKAMR--------LSNKPVILHGEP 68 (392)
T ss_dssp SEECSSSCCCCCHHHHHHTTSCCC-------------CTTSHHHHHHHHHHHHHHHHHTT--------CSSCCEEESSCT
T ss_pred ceeecCCCcCCCHHHHHHHhcccc-------------ccccHHHHHHHHHHHHHHHHHhC--------CCCCEEEEeCCc
Confidence 555555444455667777665321 11111122356788888888875 467899999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe
Q 043923 121 TSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVT 198 (469)
Q Consensus 121 ~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~ 198 (469)
++++..++.+++++||.|+++.|+|+++. ..+... |++++.++++. ++.+|++++++++++ ++++++|+++
T Consensus 69 t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~ 141 (392)
T 2z9v_A 69 VLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRY-SPHLLEIEVPY--NEAIDPQAVADMLKA----HPEITVVSVC 141 (392)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHH-CSCEEEEECCT--TSCCCHHHHHHHHHH----CTTCCEEEEE
T ss_pred hHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHc-CCceEEeeCCC--CCCCCHHHHHHHHhc----CCCCcEEEEe
Confidence 99999999999999999999999997652 333445 99999999874 346899999999863 2378899999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC-CC
Q 043923 199 NPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LP 277 (469)
Q Consensus 199 ~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~ 277 (469)
+|+||||.+++ +++|.++|++||++||+||+|+ ++... .++. ..+..+++.|+||+++ .+
T Consensus 142 ~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~---~g~~~-~~~~------------~~~~d~~~~s~sK~~~~~~ 202 (392)
T 2z9v_A 142 HHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSS---FGGMK-THPE------------DCKADIYVTGPNKCLGAPP 202 (392)
T ss_dssp SEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTT---BTTBS-CCGG------------GGTCSEEEECSSSTTCCCS
T ss_pred ccCCCCceecc---HHHHHHHHHHcCCeEEEEcccc---cCCcc-cccc------------cccceEEEecCcccccCCC
Confidence 99999999998 5568899999999999999997 32211 1211 1145688899999654 45
Q ss_pred cceEEEEEecCHHHHHHHHHh----------------------cccccCcHHHHHHHHHHhcCchhhHHH-HHHHHHHHH
Q 043923 278 GFRVGAIYSNDDMVVAAATKM----------------------SSFGLVSSQTQYLLSALLSDKKFTQNY-ISENKKRLK 334 (469)
Q Consensus 278 GlRiG~li~~~~~~~~~~~~~----------------------~~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~ 334 (469)
| +||++++++.+ +.+... ...++.+...+.++.++++.. .++ +++.+++++
T Consensus 203 g--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~ 276 (392)
T 2z9v_A 203 G--LTMMGVSERAW-AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY---LNEGPEAVWARHA 276 (392)
T ss_dssp C--CEEEEECHHHH-HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHH
T ss_pred c--eeEEEECHHHH-HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HhccHHHHHHHHH
Confidence 5 59999965443 333211 112334555555555555421 333 567788888
Q ss_pred HHHHHHHHHHHhcCCceec-CC---ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-
Q 043923 335 QRHRKLVSGLEKAGISCLK-SN---AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF- 409 (469)
Q Consensus 335 ~~~~~l~~~L~~~g~~v~~-~~---~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~- 409 (469)
++++++.+.|+++|+++.. +. .++++|+.++... +..++.+.|.+++||.+.+|..+. .++++||++
T Consensus 277 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~gi~v~~g~~~~--~~~~lRi~~~ 348 (392)
T 2z9v_A 277 LTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGV------DEKALRQAARARYGVVFSSGRGET--LGKLTRIGHM 348 (392)
T ss_dssp HHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECC
T ss_pred HHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCC------CHHHHHHHHHhcCCEEEecCCCCC--CCCeEEEeCc
Confidence 9999999999988888766 32 4578888886321 123567777655699999998543 367999995
Q ss_pred e-cCCHHHHHHHHHHHHHHHHhhcc
Q 043923 410 A-NMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 410 ~-~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+ ..+++++++++++|++++++.+-
T Consensus 349 ~~~~~~~~i~~~~~~l~~~~~~~~~ 373 (392)
T 2z9v_A 349 GPTAQPIYAIAALTALGGAMNAAGR 373 (392)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCC
Confidence 5 46999999999999999987653
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=272.02 Aligned_cols=344 Identities=11% Similarity=0.041 Sum_probs=239.4
Q ss_pred CCeeeeecccc-ccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 38 TGIIQMGLAEN-QLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
.++|+++.+.+ .++ ++.+.+++.+....... ........|+...+..++++++|++++ .+++|+
T Consensus 46 ~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~la~~~~---------~~~~i~ 111 (401)
T 2bwn_A 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGA-----GSGGTRNISGTTAYHRRLEAEIAGLHQ---------KEAALV 111 (401)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCS-----CCCSBTTTBCCBHHHHHHHHHHHHHTT---------CSEEEE
T ss_pred CcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCC-----CCCCcCcccCChHHHHHHHHHHHHHhC---------CCcEEE
Confidence 34789988776 442 34565555542110000 000011235555678999999999985 257888
Q ss_pred EeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 116 LTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
+++|++ ++..++.++. .+||.|+++.|+|..+...+... |++++.+|.+ |++++++.++... .++++
T Consensus 112 ~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~-------d~~~le~~l~~~~--~~~~~ 180 (401)
T 2bwn_A 112 FSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AGPKRIFRHN-------DVAHLRELIAADD--PAAPK 180 (401)
T ss_dssp ESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CCCEEEECTT-------CHHHHHHHHHHSC--TTSCE
T ss_pred ECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHc-CCeEEEEcCC-------CHHHHHHHHHhhc--cCCce
Confidence 888877 7777766653 58999999999999998888776 9999999864 6788888886421 12789
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+|++++|+||||.+++ +++|+++|++||+++|+||+|+...|+... ........ . ..+.+++++|+||+
T Consensus 181 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~~~~~-~------~~~~~i~~~s~sK~ 249 (401)
T 2bwn_A 181 LIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVAERDG-L------MHRIDIFNGTLAKA 249 (401)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHHHHHT-C------GGGCSEEEEESSST
T ss_pred EEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCC-ceeeeccC-c------cccCcEEEeechhh
Confidence 9999999999999999 566899999999999999999954454222 22221111 0 11347889999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhc-c--c-ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMS-S--F-GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~-~--~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
||++| ||++++ +.+.+.+.... . + ...+++.+.++.++++.... ..+++.+++++++++++.+.|+++|+
T Consensus 250 ~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~ 323 (401)
T 2bwn_A 250 YGVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKT--AEGQKLRDAQQMHAKVLKMRLKALGM 323 (401)
T ss_dssp TCSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCC---CEEecC-HHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99888 999995 44444443321 1 1 12345666666666543221 12366778888899999999988888
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
++.++.++ ++|+.++.. .+..++++.|++++||.+.|+..|+.. +.+++|++++. .+++++++++++|+++
T Consensus 324 ~~~~~~~~-~~~~~~~~~------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~ 396 (401)
T 2bwn_A 324 PIIDHGSH-IVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 396 (401)
T ss_dssp CBCCCSSS-CEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCC-eEEEEeCCh------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHH
Confidence 88777765 788988642 223456777766679999999877643 34699999985 4899999999999998
Q ss_pred HHh
Q 043923 428 VDS 430 (469)
Q Consensus 428 l~~ 430 (469)
+++
T Consensus 397 ~~~ 399 (401)
T 2bwn_A 397 WAR 399 (401)
T ss_dssp C--
T ss_pred HHh
Confidence 764
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=269.58 Aligned_cols=301 Identities=15% Similarity=0.167 Sum_probs=224.1
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCCCEEEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTS-KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTGVEIVP 162 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g~~~~~ 162 (469)
.+..++++.++++++ ++++ +|++|+|+++|+..++.+++++||.|+++.|+|..+. ..+... |++++.
T Consensus 52 ~~~~~l~~~la~~~g--------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~ 122 (393)
T 2huf_A 52 KIMDDIKEGVRYLFQ--------TNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRY-GADVRV 122 (393)
T ss_dssp HHHHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHc-CCeeEE
Confidence 356788888888885 4565 8999999999999999999999999999999998742 233445 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++++. ++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+||++. ++...
T Consensus 123 v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~---~~~~~ 189 (393)
T 2huf_A 123 VKSKV--GQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS---LGGAP 189 (393)
T ss_dssp EECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTBC
T ss_pred EeCCC--CCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc---cCCCC
Confidence 99874 4578999999998753 6889999999999999999 5568899999999999999986 33221
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEecCHHHHHHHHHh----cc-----------------
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKM----SS----------------- 300 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~~~~~~~~~~~~~----~~----------------- 300 (469)
..+. ..+.++++.|+||++ |++|+ ||+++++ .+.+.+... ..
T Consensus 190 -~~~~------------~~~~d~~~~s~sK~l~g~~G~--G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
T 2huf_A 190 -MFMD------------RWEIDAMYTGSQKVLGAPPGI--TPVSFSH-RAVERYKRRNTKVKVYYWDMSLVGDYWGCFGR 253 (393)
T ss_dssp -CCTT------------TTTCSEEECCSSSTTCCCSSC--EEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSS
T ss_pred -cchh------------hcCccEEEECCCcccccCCCe--EEEEECH-HHHHHHhhcCCCCceEEEchHHHHhhhccccc
Confidence 1111 225678889999974 56776 9999964 444444332 11
Q ss_pred ----cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecccccccCCh
Q 043923 301 ----FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLRSNTF 373 (469)
Q Consensus 301 ----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~---~g~~~~v~~~~~~~~~~~ 373 (469)
.++.+...+.++.++++... ...+++.+++++++++++.+.|+++|+++..+. +++++++.++...
T Consensus 254 ~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~----- 326 (393)
T 2huf_A 254 PRIYHHTISSTLLYGLREAIAMAC--EEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGV----- 326 (393)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTC-----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCC-----
Confidence 12345556665555554321 122567788888999999999998888877653 3458888886321
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 374 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
+..++++.|++++||.+.+|..|. .++++||++ +. .+++++++++++|++++++.+..
T Consensus 327 -~~~~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 386 (393)
T 2huf_A 327 -DWLKAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD 386 (393)
T ss_dssp -CHHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred -CHHHHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 133577777766799999998653 367999999 53 37889999999999999887663
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=267.79 Aligned_cols=297 Identities=16% Similarity=0.202 Sum_probs=222.0
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDT--SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~ 162 (469)
...++++.++++++ +++ ++|++|+|+++++. ++.+++++||.|+++.|+|.. +...+... |++++.
T Consensus 36 ~~~~~~~~la~~~~--------~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~ 105 (384)
T 3zrp_A 36 ALAYSLKGLRYVMG--------ASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRY-PVNVKV 105 (384)
T ss_dssp HHHHHHHHHHHHHT--------CCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTS-SCEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHc-CCcEEE
Confidence 45667777777775 445 88999999999999 999999999999999999855 44555555 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
+|++. ++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+|++|+. ....
T Consensus 106 v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---~~~~ 172 (384)
T 3zrp_A 106 LRPSP--GDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSV---GAEE 172 (384)
T ss_dssp ECCST--TCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTT---TTSC
T ss_pred ecCCC--CCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccc---cCcc
Confidence 99874 4568999999999752 6899999999999999999 55689999999999999999973 2211
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH------------HHHh-----------c
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA------------ATKM-----------S 299 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~------------~~~~-----------~ 299 (469)
..+. ..+.++++.|+||+++ ++.++||++++++.+... .... .
T Consensus 173 -~~~~------------~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (384)
T 3zrp_A 173 -VKAE------------EWNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA 238 (384)
T ss_dssp -CCTT------------TTTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCC
T ss_pred -cccc------------ccCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCC
Confidence 1111 2256788999999985 445599999966544332 0111 1
Q ss_pred cc-ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecccccccCChh
Q 043923 300 SF-GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLRSNTFE 374 (469)
Q Consensus 300 ~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~----~g~~~~v~~~~~~~~~~~~ 374 (469)
.. ++.+...+.++.+++.... ...+++.+++++++++++.+.|+++|+++..+. +++++|+.++. .
T Consensus 239 ~~~g~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~------ 309 (384)
T 3zrp_A 239 AYFATPPVHVILQLAEAFRLIE--KEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-A------ 309 (384)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-S------
T ss_pred CcCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-C------
Confidence 11 2455555555555554211 222677888889999999999999888887766 56788898875 1
Q ss_pred HHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 375 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 375 ~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+..++.+.+. ++||.+.+|..+.. +++|+++.. .+++++++++++|++++++.+.
T Consensus 310 ~~~~~~~~l~-~~gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 310 DPQKVLAGTV-NEGVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp CHHHHHHHHH-TTTCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHH-HCCEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 1235666665 55999999875432 899999875 4899999999999999987754
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=275.17 Aligned_cols=347 Identities=13% Similarity=0.122 Sum_probs=239.7
Q ss_pred CCCCCeeeeeccccccChHHHHHHHhcCCC--ccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 35 QNPTGIIQMGLAENQLSFDLLESWLDRNPD--AAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 35 ~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
....++|.|+.+.+..+++.+.+++.+... .....+.. . .....|.......++++.++++++ ++++
T Consensus 18 ~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~la~~~~--------~~~~ 86 (423)
T 3lvm_A 18 RAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPAS-R--SHRFGWQAEEAVDIARNQIADLVG--------ADPR 86 (423)
T ss_dssp --CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTC-T--TSHHHHHHHHHHHHHHHHHHHHHT--------CCGG
T ss_pred cccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCc-c--ccchhHHHHHHHHHHHHHHHHHcC--------CCCC
Confidence 344578888888777667777777776422 10000000 0 000001111234677777777775 5788
Q ss_pred cEEEeCChHHHHHHHHHHhcC----CCCEEEEccCCCcChHHHH---hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHH
Q 043923 113 KIVLTAGATSANETLMFCLAE----PGEAFLLPTPYYPGFDRDL---KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLA 185 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~----~gd~Vl~~~P~y~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 185 (469)
+|++|+|+++|+..++.++.+ +||.|+++.|+|+.+...+ ... |++++.+|.+. ++.+|++++++++++
T Consensus 87 ~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~- 162 (423)
T 3lvm_A 87 EIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEVTYLAPQR--NGIIDLKELEAAMRD- 162 (423)
T ss_dssp GEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHT-TCEEEEECCCT--TSCCCHHHHHHHCCT-
T ss_pred eEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHc-CCEEEEeccCC--CCccCHHHHHHhcCC-
Confidence 999999999999999998873 7999999999999887665 444 99999999874 567899999998865
Q ss_pred HhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEE
Q 043923 186 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVH 265 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i 265 (469)
++++|++++|+||||.+++ +++|+++|++||++||+||+|+.. ... .... ..+.++
T Consensus 163 -----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~---~~~-~~~~------------~~~~di 218 (423)
T 3lvm_A 163 -----DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVG---KLP-IDLS------------QLKVDL 218 (423)
T ss_dssp -----TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT---TSC-CCTT------------TSCCSE
T ss_pred -----CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcC---CCC-cChh------------hcCCCE
Confidence 7899999999999999999 555889999999999999998732 111 1111 224668
Q ss_pred EEccCccccCCCcceEEEEEecCHHHHHHHHHh---------cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH
Q 043923 266 IVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---------SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQR 336 (469)
Q Consensus 266 ~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~---------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~ 336 (469)
++.|+||.+|.+| +||++++++.... +... ...++.+...+.++.+++.. ..+++++.+++++++
T Consensus 219 ~~~s~sK~~g~~g--~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~ 292 (423)
T 3lvm_A 219 MSFSGHKIYGPKG--IGALYVRRKPRVR-IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGL 292 (423)
T ss_dssp EEEESTTTTSCSS--CEEEEECBTTBCC-CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred EEechHHhcCCCC--eEEEEEeccccCC-CCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 8999999888666 8999986543322 1111 11233455666665555542 234467888899999
Q ss_pred HHHHHHHHHhc-CCceecCCc---eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC-----------
Q 043923 337 HRKLVSGLEKA-GISCLKSNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE----------- 401 (469)
Q Consensus 337 ~~~l~~~L~~~-g~~v~~~~~---g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~----------- 401 (469)
++++.+.|+++ ++++..+.+ +.++++.++.. +..++...+ .+ |.+.+|..|....
T Consensus 293 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l-~~--i~v~~g~~~~~~~~~~~~~~~~~g 362 (423)
T 3lvm_A 293 RNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMAL-KD--LAVSSGSACTSASLEPSYVLRALG 362 (423)
T ss_dssp HHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTS-------CHHHHHHHT-TT--EECBCCCC-----CCCCHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCC-------CHHHHHHHH-hh--heeccCccccCCCccccHHHHHhC
Confidence 99999999888 888776553 23455555321 122445544 34 9999998765421
Q ss_pred ------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccccc
Q 043923 402 ------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTLH 436 (469)
Q Consensus 402 ------~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~~~ 436 (469)
++++||+++. .+++++++++++|++++++.++.+.
T Consensus 363 ~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~ 404 (423)
T 3lvm_A 363 LNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSP 404 (423)
T ss_dssp CCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSH
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCc
Confidence 4789999985 4899999999999999998887443
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=266.51 Aligned_cols=331 Identities=13% Similarity=0.136 Sum_probs=224.2
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
|..+|+|+.++|++|++.+.+++.+.. .....|.+..+..+|++++|++++ .+.+++
T Consensus 2 ~~~~i~~~~~~~~~p~~~~~~a~~~~~-------------~~~~~y~~~~~~~~l~~~la~~~g----------~~~~~~ 58 (347)
T 1jg8_A 2 PHMMIDLRSDTVTKPTEEMRKAMAQAE-------------VGDDVYGEDPTINELERLAAETFG----------KEAALF 58 (347)
T ss_dssp ---CEECSCGGGCCCCHHHHHHHHTCC-------------CCCGGGTCCHHHHHHHHHHHHHHT----------CSEEEE
T ss_pred CceEEEeccccCCCCCHHHHHHHhcCC-------------CCCcccCCChHHHHHHHHHHHHhC----------CceEEE
Confidence 456899999999998887888876531 111257666788999999999986 246788
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH---HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR---DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
++|+++++.+++.+++++||.|+++.|+|..... .+... |++++.+ .+ .++.+|++++++++++.....++++
T Consensus 59 ~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~ 134 (347)
T 1jg8_A 59 VPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLS-GVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTS 134 (347)
T ss_dssp ESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHT-CCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEE
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhcc-CeEEEEe-cC--CCCccCHHHHHHHhccccccccCce
Confidence 8888999999999999999999999999865332 34555 9999888 43 2456899999988752000012689
Q ss_pred EEEEecCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEecccccc--ccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 194 GVLVTNPSNPL-GTTMSRNELNLLVNIITEKNIHLISDEIYSGT--VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 194 ~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
+|++++|+||| |.+++.+++++|+++|++||++||+||+|... .+.+. +...+.. ..+.+ +.|+
T Consensus 135 ~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~--------~~d~~--~~s~ 201 (347)
T 1jg8_A 135 LIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV---PVKEYAG--------YADSV--MFCL 201 (347)
T ss_dssp EEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC---CHHHHHH--------TCSEE--EEES
T ss_pred EEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC---ChHHhcc--------cccEE--EEec
Confidence 99999999999 99999999999999999999999999987521 11222 2222322 22333 3489
Q ss_pred ccccCCCcceEEE-EEecCHHHHHHHHHhccc-c---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 271 SKDLGLPGFRVGA-IYSNDDMVVAAATKMSSF-G---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 271 SK~~g~~GlRiG~-li~~~~~~~~~~~~~~~~-~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
||++|++ +|+ +++ ++.+.+.+...... + ..+.+.+.++...++.. .+...+ ..++++.+.+.|+
T Consensus 202 sK~l~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~-~~~~~~~l~~~L~ 270 (347)
T 1jg8_A 202 SKGLCAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM------VDRLKE-DHENARFLALKLK 270 (347)
T ss_dssp SSTTCCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS------STTHHH-HHHHHHHHHHHHH
T ss_pred ccccCCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHH
Confidence 9999743 564 555 44444433332211 1 12334444444444321 111112 2245577788887
Q ss_pred hcCCcee-cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHH
Q 043923 346 KAGISCL-KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 423 (469)
Q Consensus 346 ~~g~~v~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~ 423 (469)
++|+++. .+..++|+|++++.. . .+..++++.|. ++||.++++. .+++|++++. .+++++++++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~l~-~~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~ 338 (347)
T 1jg8_A 271 EIGYSVNPEDVKTNMVILRTDNL--K---VNAHGFIEALR-NSGVLANAVS------DTEIRLVTHKDVSRNDIEEALNI 338 (347)
T ss_dssp HHTCBCCGGGCCSSEEEEECTTS--S---SCHHHHHHHHH-HHTEECEEEE------TTEEEEECCTTSCHHHHHHHHHH
T ss_pred hcCceeccCCCcceEEEEEcccc--c---CCHHHHHHHHH-HCCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHH
Confidence 7777653 344557899998631 0 12335777776 5699999752 4689999954 589999999999
Q ss_pred HHHHHHh
Q 043923 424 LKAFVDS 430 (469)
Q Consensus 424 L~~~l~~ 430 (469)
|++++++
T Consensus 339 l~~~l~~ 345 (347)
T 1jg8_A 339 FEKLFRK 345 (347)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=271.34 Aligned_cols=342 Identities=15% Similarity=0.134 Sum_probs=242.2
Q ss_pred CCCeeeeecccc-cc-ChHHHHHHHhcCCCccccccCCccccc-ccccCC----CCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 37 PTGIIQMGLAEN-QL-SFDLLESWLDRNPDAAGFKRDGQSIFR-ELALFQ----DYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 37 ~~~~i~L~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~----~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
..++|||+.|.+ .+ +++.+.+++.+.... +. ....|. ......+|++.++++++ .
T Consensus 63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~G~~~~~~~l~~~la~~~g--------~ 124 (427)
T 2w8t_A 63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEK----------FGSGTCGSRMLNGTFHDHMEVEQALRDFYG--------T 124 (427)
T ss_dssp TEEEEECSCCCTTCGGGCHHHHHHHHHHHHH----------HCSCCCSCTTTTCCCHHHHHHHHHHHHHHT--------C
T ss_pred CceEEEEECcccccCCCCHHHHHHHHHHHHH----------hCCCCcccccccCCcHHHHHHHHHHHHHhC--------C
Confidence 356899999965 22 345555555542100 00 011122 22335788888888874 2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+..++++++++++..++.+++++||.|+++.|+|..+...+... |.+++.++. .|++++++.+++.. .
T Consensus 125 --~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~-g~~~~~~~~-------~d~~~le~~l~~~~--~ 192 (427)
T 2w8t_A 125 --TGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG-NAEIVRFRH-------NSVEDLDKRLGRLP--K 192 (427)
T ss_dssp --SEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHS-CSEEEEECT-------TCHHHHHHHHHTSC--S
T ss_pred --CceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCeeEEeCC-------CCHHHHHHHHHhcc--C
Confidence 24555666677999999999999999999999999999888877 999998873 48899999886421 1
Q ss_pred CceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 190 LKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
.++++|++++|+||||.+++ +++|.++|++||+++|+||+|+.+.++.. ..++.+... + ..+.+++++|
T Consensus 193 ~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~-g~~~~~~~~-~------~~~~di~~~s 261 (427)
T 2w8t_A 193 EPAKLVVLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN-GRGVYEAQG-L------EGQIDFVVGT 261 (427)
T ss_dssp SSCEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT-SCCHHHHTT-C------TTCCSEEEEE
T ss_pred CCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCchHhhcC-C------CcCCcEEEec
Confidence 26889999999999999998 66789999999999999999998666532 123333221 0 2245899999
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHh-ccc---ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSF---GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
+||++|++| ||+++++..+ +.+... ..+ +..+++.+.++.++|+.... .++.+++++++++++.+.|+
T Consensus 262 ~sK~~g~~g---G~v~~~~~l~-~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~----~~~~~~~~~~~~~~l~~~L~ 333 (427)
T 2w8t_A 262 FSKSVGTVG---GFVVSNHPKF-EAVRLACRPYIFTASLPPSVVATATTSIRKLMT----AHEKRERLWSNARALHGGLK 333 (427)
T ss_dssp SSSTTCSCC---EEEEECCTTG-GGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccCC---CEEEeCHHHH-HHHHHhcccccccCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 999999777 9999965433 333222 111 23555665555566543221 35677888889999999999
Q ss_pred hcCCcee-cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC-CCCeEEEEeec-CCHHHHHHHHH
Q 043923 346 KAGISCL-KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFAN-MSEDTLKLSMQ 422 (469)
Q Consensus 346 ~~g~~v~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-~~~~iRi~~~~-~~~e~i~~~l~ 422 (469)
++|+++. ++..|.++|+.++.. ....+++..|+++ ||.+.|+..|+.. +.+++|++++. .++++++++++
T Consensus 334 ~~g~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~ 406 (427)
T 2w8t_A 334 AMGFRLGTETCDSAIVAVMLEDQ------EQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLG 406 (427)
T ss_dssp HHTCEESCSSCCSSEEEEEESSH------HHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred HcCCcccCCCCCCCEEEEEECCH------HHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8898887 442457888988642 2234567777654 9999999877643 35689999986 49999999999
Q ss_pred HHHHHHHhhccc
Q 043923 423 RLKAFVDSITTT 434 (469)
Q Consensus 423 ~L~~~l~~~~~~ 434 (469)
+|++++++..+.
T Consensus 407 ~l~~~l~~~~~~ 418 (427)
T 2w8t_A 407 MFQAAGRAVGVI 418 (427)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhCcc
Confidence 999999877663
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=271.94 Aligned_cols=298 Identities=15% Similarity=0.165 Sum_probs=221.9
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEEccCCCcChHHHHhh--hCCCEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----EPGEAFLLPTPYYPGFDRDLKW--RTGVEI 160 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~~~--~~g~~~ 160 (469)
...++++.++++++ +++++|++|+|+++|+.+++.++. ++||.|++++|+|+.+...+.. ..|+++
T Consensus 44 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4eb5_A 44 AVQEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEE
Confidence 46778888888875 567899999999999999999997 8999999999999988666542 139999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+.+|++. ++.+|++++++++++ ++++|++++|+||||.+++ +++|+++|++||++ |+||+|+ ++.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~---~g~ 180 (382)
T 4eb5_A 116 EYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATAS---VGQ 180 (382)
T ss_dssp EEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTT---BTT
T ss_pred EEeccCC--CCccCHHHHHHHhcC------CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchh---cCC
Confidence 9999874 467899999988864 7899999999999999999 45689999999999 9999998 332
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-HHHHHH-----HhcccccCcHHHHHHHHH
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-VVAAAT-----KMSSFGLVSSQTQYLLSA 314 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-~~~~~~-----~~~~~~~~s~~~q~~~~~ 314 (469)
.. .++..+ +.++++.|+||.+|.+| +||++++++. +..... .....++.+...+.++.+
T Consensus 181 ~~-~~~~~~------------~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (382)
T 4eb5_A 181 IE-VDVEKI------------GADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGK 245 (382)
T ss_dssp BC-CCHHHH------------TCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHH
T ss_pred cc-cCcccc------------CCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHH
Confidence 21 222221 45688899999988666 6899886652 211110 011123345555555555
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCc---eEEEEEecccccccCChhHHHHHHHHHHHhCCeE
Q 043923 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~---g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~ 390 (469)
++.. ..+.+++.+++++++++++.+.|+++ ++++..+.+ +.++++.++. . +..++.+.+. ++||.
T Consensus 246 al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~l~-~~gi~ 314 (382)
T 4eb5_A 246 AAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY-I------EGESIVLSLD-MAGIQ 314 (382)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-S------CHHHHHHHHH-HHTCB
T ss_pred HHHH---HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC-c------CHHHHHHHHH-HCCEE
Confidence 5542 13456778888999999999999987 777766542 4567777762 1 1235666665 56999
Q ss_pred EeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 391 ISPGSSCHCT-----------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 391 v~pg~~f~~~-----------------~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+.+|..|... .++++||+++. .+++++++++++|++++++.++
T Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 315 ASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999865432 25799999985 4899999999999999987765
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=265.01 Aligned_cols=330 Identities=11% Similarity=0.110 Sum_probs=235.9
Q ss_pred eeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCC--CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 40 IIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD--YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 40 ~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
+++|+.|.. .+++.+.+++.+. +. +.|+. ..+..++++++|++++ .+.+++++++|
T Consensus 5 ~~~~~~gp~-~~~~~v~~a~~~~-------------~~--~~~~~~~~~~~~~l~~~la~~~g------~~~~~~~v~~~ 62 (366)
T 1m32_A 5 YLLLTPGPL-TTSRTVKEAMLFD-------------SC--TWDDDYNIGVVEQIRQQLTALAT------ASEGYTSVLLQ 62 (366)
T ss_dssp CEECSSSSC-CCCHHHHHTTCCC-------------CC--TTSHHHHTTTHHHHHHHHHHHHC------SSSSEEEEEEE
T ss_pred cccccCCCc-CCCHHHHHHHhhh-------------hc--CCCHHHHHHHHHHHHHHHHHHhC------CCCcCcEEEEe
Confidence 578888732 2455566665542 11 12221 1578999999999986 11234689999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEcc-CCCcC-hHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPT-PYYPG-FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~-P~y~~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+++|+..++.+++++||.|++.. |+|.. +...+... |++++.++.+. ++.+|++++++++++ .+++++|
T Consensus 63 ~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~l~~----~~~~~~v 135 (366)
T 1m32_A 63 GSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHAYDCGE--VARPDVQAIDAILNA----DPTISHI 135 (366)
T ss_dssp SCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEEEECCT--TSCCCHHHHHHHHHH----CTTCCEE
T ss_pred cChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHh-CCceEEEeCCC--CCCCCHHHHHHHHhc----CCCeEEE
Confidence 9999999999999999999988776 55554 45556666 99999999863 456899999999875 1257889
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++++|+||||.+++ +++|.++|++||+++|+||+|+.. ... .++. ..+.++++.|+||+++
T Consensus 136 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~---~~~-~~~~------------~~~~di~~~s~~K~~~ 196 (366)
T 1m32_A 136 AMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFG---GIP-MDIA------------ALHIDYLISSANKCIQ 196 (366)
T ss_dssp EEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTT---TSC-CCTT------------TTTCSEEEEESSSTTC
T ss_pred EEecccCCcceecC---HHHHHHHHHHcCCEEEEECCcccc---CcC-cccc------------ccCccEEEecCccccc
Confidence 99999999999999 567899999999999999999732 111 1111 1245688999999874
Q ss_pred CCcceEEEEEecCHHHHHHHHHh----------------c--c--cccCcHHHHHHHHHHhcCchhhHHH--HHHHHHHH
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKM----------------S--S--FGLVSSQTQYLLSALLSDKKFTQNY--ISENKKRL 333 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~----------------~--~--~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~l 333 (469)
.+.++||++++++.+ +.+... . . .++.+.+.+.++.++++.. .++ +++.++++
T Consensus 197 -~~~g~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~ 271 (366)
T 1m32_A 197 -GVPGFAFVIAREQKL-AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL---AKEGGVAARHQRY 271 (366)
T ss_dssp -CCSSEEEEEEEHHHH-TTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---HHHTHHHHHHHHH
T ss_pred -CCCceEEEEECHHHH-HhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH---HHccCHhHHHHHH
Confidence 334579999965433 222111 0 0 1345666666666666432 333 56778888
Q ss_pred HHHHHHHHHHHHhcCCceecC---CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee
Q 043923 334 KQRHRKLVSGLEKAGISCLKS---NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 410 (469)
Q Consensus 334 ~~~~~~l~~~L~~~g~~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~ 410 (469)
+++++++.+.|+++|+++..+ .+++++|+.++.... .+..++.+.+. ++||.+.+|..| .++++|++++
T Consensus 272 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~v~~~~~~---~~~~iRi~~~ 343 (366)
T 1m32_A 272 QQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQ----YRFSEFYRRLK-EQGFVIYPGKVS---QSDCFRIGNI 343 (366)
T ss_dssp HHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTT----CCHHHHHHHHH-HTTEECEECCCS---SSCEEEEECC
T ss_pred HHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCC----CCHHHHHHHHH-HCCEEEECCcCC---CCCEEEEecC
Confidence 999999999999888877654 366799999874100 12335666666 559999999877 3679999998
Q ss_pred cC-CHHHHHHHHHHHHHHHHh
Q 043923 411 NM-SEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 411 ~~-~~e~i~~~l~~L~~~l~~ 430 (469)
.. +++++++++++|++++++
T Consensus 344 ~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 344 GEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 64 799999999999998754
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=266.47 Aligned_cols=296 Identities=15% Similarity=0.159 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEEccCCCcChHHHHhhh--CCCEEEE
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA----EPGEAFLLPTPYYPGFDRDLKWR--TGVEIVP 162 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~~~~--~g~~~~~ 162 (469)
.++++.++++++ +++++|++|+|+++++..++.++. ++||.|+++.|.|+.+...+... .|++++.
T Consensus 46 ~~~~~~la~~~~--------~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (382)
T 4hvk_A 46 QEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEY 117 (382)
T ss_dssp HHHHHHHHHHTT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcC--------CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEE
Confidence 356666666654 567899999999999999999987 99999999999999887654431 3999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
+|.+. ++.+|++++++++++ ++++|++++|+||||.+++. ++|.++|++||+ +|+|++|+ ++...
T Consensus 118 v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~---~~i~~l~~~~~~-li~D~a~~---~~~~~ 182 (382)
T 4hvk_A 118 IPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQPV---EEISEVLAGKAA-LHIDATAS---VGQIE 182 (382)
T ss_dssp ECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCCH---HHHHHHHSSSSE-EEEECTTT---BTTBC
T ss_pred eccCC--CCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCCH---HHHHHHHHHcCE-EEEEhHHh---cCCCC
Confidence 99873 557899999998864 78999999999999999994 568889999999 99999987 32211
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-HHHHHH-----HhcccccCcHHHHHHHHHHh
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-VVAAAT-----KMSSFGLVSSQTQYLLSALL 316 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-~~~~~~-----~~~~~~~~s~~~q~~~~~~l 316 (469)
.+... .+.++++.|+||.+|.+| +|+++++++. +..... .....++.+...+.++.+++
T Consensus 183 -~~~~~------------~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 247 (382)
T 4hvk_A 183 -VDVEK------------IGADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAA 247 (382)
T ss_dssp -CCHHH------------HTCSEEEEESGGGTSCTT--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHH
T ss_pred -CCchh------------cCCCEEEEeHHHhcCCCc--eEEEEEcCccCcCcccccCCCcCccccCCcCHHHHHHHHHHH
Confidence 12221 145688999999888666 6676665432 100000 00112334556666665555
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCc---eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe
Q 043923 317 SDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS 392 (469)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~---g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~ 392 (469)
. +..+++++.+++++++++++.+.|+++ ++++..+.+ +.++++.++.. +..++.+.+ .++||.+.
T Consensus 248 ~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l-~~~gi~v~ 316 (382)
T 4hvk_A 248 E---ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLSL-DMAGIQAS 316 (382)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------CHHHHHHHH-HHTTCBCB
T ss_pred H---HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------CHHHHHHHH-HHCCEEEe
Confidence 4 224567888889999999999999987 777765543 23666666531 122455555 56799999
Q ss_pred CCCCCCCCC-----------------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 393 PGSSCHCTE-----------------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 393 pg~~f~~~~-----------------~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+|..|.... ++++||+++. .+++++++++++|++++++.++
T Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 317 TGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 998776533 5799999985 4899999999999999988776
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=265.39 Aligned_cols=303 Identities=14% Similarity=0.120 Sum_probs=223.8
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC-------------CCEEEEccCCCcChHHHHh
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEP-------------GEAFLLPTPYYPGFDRDLK 153 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~-------------gd~Vl~~~P~y~~~~~~~~ 153 (469)
+..++++++++++.+.++ +++++|++|+|+++|+..++.++..+ ||.|+++.|+|..+...+.
T Consensus 66 ~~~~~~~~l~~~la~~~~----~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~ 141 (397)
T 3f9t_A 66 GTKLLEEKAVALLGSLLN----NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHHHTT----CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH
Confidence 456777777777776655 57889999999999999999998765 9999999999999999998
Q ss_pred hhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc
Q 043923 154 WRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233 (469)
Q Consensus 154 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay 233 (469)
.. |++++.+|.+. ++.+|++++++++++. ++++|++++|+||||.+.+ +++|.++|++||+++|+||+|
T Consensus 142 ~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~ 210 (397)
T 3f9t_A 142 MM-DLEYIYAPIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAF 210 (397)
T ss_dssp HH-TCEEEEECBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTT
T ss_pred Hc-CceeEEEeeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccc
Confidence 88 99999999874 5778999999998752 6889999999999999988 556899999999999999999
Q ss_pred cccccCCCCc-cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc----------
Q 043923 234 SGTVFSSPGF-VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG---------- 302 (469)
Q Consensus 234 ~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~---------- 302 (469)
+.+.++.... .++..+..... ... +..+++.|++|.++ +|.|+|+++++++.+.+.+.....+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 3f9t_A 211 GGLVIPFLDDKYKKKGVNYKFD---FSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILG 285 (397)
T ss_dssp GGGTGGGCCGGGCCTTCCCCCS---GGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCS
T ss_pred cchhhhhccccccccccccccc---ccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCcccccc
Confidence 8654321110 00000000000 002 45678899999875 88899999997765544332212221
Q ss_pred c---CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHH
Q 043923 303 L---VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 303 ~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
. .+.+.+.++...+. ...+++..+++.++++++.+.|+++|+++..+..+.++|+.++. ..++
T Consensus 286 ~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~ 351 (397)
T 3f9t_A 286 TRVGFGGACTYAVLRYLG-----REGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------YKEV 351 (397)
T ss_dssp SCCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------HHHH
T ss_pred ccccchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------HHHH
Confidence 1 13345555555553 23356677778889999999999988886555556777888763 2245
Q ss_pred HHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 380 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
.+.+. ++||.+.+|.. ++++|++++. .+++++++++++|+++++
T Consensus 352 ~~~l~-~~gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 352 CKKLR-DRGIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHHH-HTTCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHH-hCCeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 66665 55999998863 5799999985 489999999999998865
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=266.81 Aligned_cols=288 Identities=15% Similarity=0.169 Sum_probs=213.5
Q ss_pred ccCCCCCCcH---HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HH
Q 043923 80 ALFQDYHGLP---AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DL 152 (469)
Q Consensus 80 ~~Y~~~~g~~---~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~ 152 (469)
..|+. .|.+ +|++++|++++ . +++++++|+++|+..++.+++++||.|+++.|.|.++.. .+
T Consensus 54 ~~Y~~-~~~~~~~~l~~~ia~~~g--------~--~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~ 122 (404)
T 1e5e_A 54 YIYTR-LGNPTVSNLEGKIAFLEK--------T--EACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHAL 122 (404)
T ss_dssp CCBTT-TCCHHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHH
T ss_pred ccccC-CcChHHHHHHHHHHHHhC--------C--CcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHH
Confidence 45776 4555 89999999985 2 378888888999999999999999999999999999887 56
Q ss_pred hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh-cCeEEEEec
Q 043923 153 KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE-KNIHLISDE 231 (469)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~-~~~~iI~De 231 (469)
... |++++.++.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+||
T Consensus 123 ~~~-g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De 185 (404)
T 1e5e_A 123 TKF-GIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADN 185 (404)
T ss_dssp HHT-TCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEEC
T ss_pred HHc-CCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEEC
Confidence 666 9999999864 66888888764 7999999999999999997 6679999999 999999999
Q ss_pred cccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhcccc---cCcHH
Q 043923 232 IYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSSFG---LVSSQ 307 (469)
Q Consensus 232 ay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~~~---~~s~~ 307 (469)
+|+.+.+. . + ..+ ++++++.|+||+|+++|+|+ ||++++++.+.+.+......+ .++++
T Consensus 186 ~~~~~~~~-~---~-~~~------------~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~ 248 (404)
T 1e5e_A 186 TFCSPMIT-N---P-VDF------------GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 248 (404)
T ss_dssp TTTCTTTC-C---G-GGG------------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHH
T ss_pred CCchhhhC-C---c-ccc------------CCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHH
Confidence 99976442 1 1 111 57889999999999999998 999997665553555444332 36778
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC---------------CceecC----CceEEEEEeccccc
Q 043923 308 TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG---------------ISCLKS----NAGLFCWVDMRHLL 368 (469)
Q Consensus 308 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g---------------~~v~~~----~~g~~~~v~~~~~~ 368 (469)
.+.++.+.++.. ..+.++..++.+.+.+.+++.. +++.++ .++++.| ++++.
T Consensus 249 ~~~~~~~~l~~~-------~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~- 319 (404)
T 1e5e_A 249 DAWLITRGLSTL-------NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSG- 319 (404)
T ss_dssp HHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTH-
T ss_pred HHHHHHHhHhHH-------HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCC-
Confidence 888888888653 2233334445555566665542 222222 2666665 77631
Q ss_pred ccCChhHHHHHHHHHHHhCCeEEeCCCCCCC-----------------------CC--CCeEEEEeecCCHHHHHHHHHH
Q 043923 369 RSNTFEAEMELWKKIVYDVKLNISPGSSCHC-----------------------TE--PGWFRVCFANMSEDTLKLSMQR 423 (469)
Q Consensus 369 ~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-----------------------~~--~~~iRi~~~~~~~e~i~~~l~~ 423 (469)
.+.+.+++++.|| +.+|..|+. .+ ++++||+++. +++++++++
T Consensus 320 --------~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~ 387 (404)
T 1e5e_A 320 --------FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIAD 387 (404)
T ss_dssp --------HHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHH
T ss_pred --------HHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHH
Confidence 1235567788899 555655552 12 5799999984 889999999
Q ss_pred HHHHHHhhcc
Q 043923 424 LKAFVDSITT 433 (469)
Q Consensus 424 L~~~l~~~~~ 433 (469)
|+++++..-.
T Consensus 388 l~~al~~~~~ 397 (404)
T 1e5e_A 388 FKQGLDALLR 397 (404)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999876554
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=265.62 Aligned_cols=294 Identities=14% Similarity=0.058 Sum_probs=219.2
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCCCEEEEe
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTGVEIVPI 163 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g~~~~~v 163 (469)
.++.++++++|++++ +++++|++|+|+++|+..++.+++++||.|+++.|+|+++. ..+... |++++.+
T Consensus 34 ~~~~~l~~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v 104 (352)
T 1iug_A 34 EVFLKARGLLREAFR--------TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERL 104 (352)
T ss_dssp HHHHHHHHHHHHHHT--------CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHhC--------CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHHHc-CCceEEE
Confidence 356889999999886 45789999999999999999999999999999999998864 333445 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccccccccCCC
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK--NIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Deay~~~~~~~~ 241 (469)
+++. ++.+|++++++ +++++|++++|+||||.+++ +++|.++|++| |++||+||+|+ ++..
T Consensus 105 ~~~~--~~~~d~~~l~~---------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~---~~~~ 167 (352)
T 1iug_A 105 DYPY--GDTPRPEDVAK---------EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTS---LLVG 167 (352)
T ss_dssp ECCT--TCCCCTTTSCC---------SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTT---BTTB
T ss_pred eCCC--CCCCCHHHHhc---------cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCcc---ccCc
Confidence 9874 34577777765 27889999999999999998 55688999999 99999999997 3322
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH------------HHH---HhcccccCcH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA------------AAT---KMSSFGLVSS 306 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~------------~~~---~~~~~~~~s~ 306 (469)
. ..+. ..+..+++.|+||+++ .+.++||++++++.+.. ... .....++.+.
T Consensus 168 ~-~~~~------------~~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T 1iug_A 168 E-VALE------------AMGVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAI 233 (352)
T ss_dssp C-CCSG------------GGTCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCH
T ss_pred c-eecc------------ccCeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCH
Confidence 1 1111 1145678899999554 22358999996554422 111 1122344666
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEecccccccCChhHHHHHHHHHHH
Q 043923 307 QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRHLLRSNTFEAEMELWKKIVY 385 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~ 385 (469)
..+.++.+++... .+++++.+++++++++++.+.|+++|+++..+. .++++|+.++... +..++++.+.
T Consensus 234 ~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~- 303 (352)
T 1iug_A 234 NLVLAVAAVLEEV---LPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV------PYARVKEAFA- 303 (352)
T ss_dssp HHHHHHHHHHHHH---GGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC------CHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCC------CHHHHHHHHH-
Confidence 7776666666532 222567788889999999999998888887764 6678999887321 1235666666
Q ss_pred hCCeEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHHHHHHHhh
Q 043923 386 DVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 386 ~~GI~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~ 431 (469)
++||.+.+|..+ ..++++||+++.. +++++++++++|++++++.
T Consensus 304 ~~gi~v~~~~~~--~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 304 QRGAVIAGGQGP--LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp TTTEECEECCGG--GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCEEEEeCCCc--cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 559999998732 2467999999864 7999999999999998765
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=265.36 Aligned_cols=345 Identities=14% Similarity=0.123 Sum_probs=233.1
Q ss_pred eeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 40 IIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 40 ~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
.+|++.+.++.+ .+.+.+++... ...|.+..+..+|++++|++++ .+++++++
T Consensus 44 ylD~~~~~~~~~~~~~~~~a~~~~----------------~~~y~~~~~~~~l~~~la~~~~----------~~~~~~~~ 97 (456)
T 2ez2_A 44 YIDLLTDSGTNAMSDKQWAGMMMG----------------DEAYAGSENFYHLERTVQELFG----------FKHIVPTH 97 (456)
T ss_dssp SEECSCSSSCCCCCHHHHHHHTTC----------------CCCSSSCHHHHHHHHHHHHHHC----------CSEEEEES
T ss_pred eeeeccccCCccCCHHHHHHhhcc----------------hhhcccChhHHHHHHHHHHHhC----------CCcEEEeC
Confidence 578888776654 34455554421 1257667788999999999985 35799999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCC-cChHHHHhhhCCCEEEEeeccCC----C----CcccCHHHHHHHHHHHHhcC
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYY-PGFDRDLKWRTGVEIVPIQCTSL----N----GFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y-~~~~~~~~~~~g~~~~~v~~~~~----~----~~~~d~~~l~~~i~~~~~~~ 189 (469)
|+++|+..++.+++++|| +++.|+| ..+...+... |++++.++++.+ . +|.+|++++++++++.. .
T Consensus 98 ~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~-G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~ 172 (456)
T 2ez2_A 98 QGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKN-GAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--A 172 (456)
T ss_dssp SHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHT-TCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--G
T ss_pred CcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHc-CCEEEEecccccccccccccccCCCCHHHHHHHHHhcc--c
Confidence 999999999999999999 7889999 7667777776 999999998732 1 36789999999997521 1
Q ss_pred CceeEEEEecCCC-CCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc----------cccCCCCccchhhhhhccccccC
Q 043923 190 LKVKGVLVTNPSN-PLGTTMSRNELNLLVNIITEKNIHLISDEIYSG----------TVFSSPGFVSIMEILKDRNCENT 258 (469)
Q Consensus 190 ~~~~~vvl~~P~N-PtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~----------~~~~~~~~~s~~~~~~~~~~~~~ 258 (469)
.++++|++++|+| |||.+++.+++++|+++|++||++||+||+|+. ..+.+....++.....
T Consensus 173 ~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~------- 245 (456)
T 2ez2_A 173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF------- 245 (456)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-------
T ss_pred cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhc-------
Confidence 2358999999998 999999999999999999999999999999985 2233322111110111
Q ss_pred CcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc-------cccCcHHHHHH-HHHHhcCchhhHHHHHHHH
Q 043923 259 QVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-------FGLVSSQTQYL-LSALLSDKKFTQNYISENK 330 (469)
Q Consensus 259 ~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~-------~~~~s~~~q~~-~~~~l~~~~~~~~~~~~~~ 330 (469)
...+++++ |++|.++ +| +.||++++++.+.+.+..... ....+.....+ +.++++ .+. +...
T Consensus 246 -~~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~---~~~---~~~~ 315 (456)
T 2ez2_A 246 -SYADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE---AMQ---YEYI 315 (456)
T ss_dssp -TTCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH---HTC---HHHH
T ss_pred -ccCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHH---HhH---HHHH
Confidence 11344444 7888765 77 789999855555444433221 11123222222 222221 111 1223
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccc---cccCChhHHHHHHHHHHHhCCeEEeC-CCCCC--------
Q 043923 331 KRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL---LRSNTFEAEMELWKKIVYDVKLNISP-GSSCH-------- 398 (469)
Q Consensus 331 ~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~---~~~~~~~~~~~l~~~ll~~~GI~v~p-g~~f~-------- 398 (469)
++..+..+++.+.|++.|+++..+.+++++|+.+... .+...+ ....++..|++++||.+.+ |..|.
T Consensus 316 ~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~ 394 (456)
T 2ez2_A 316 EHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEF-PAQSLAASIYVETGVRSMERGIISAGRNNVTGE 394 (456)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGC-HHHHHHHHHHHHHSEECEEESHHHHCBCTTTCS
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhc-cHHHHHHHHHHhcCeeeecccccccccCccccc
Confidence 3334455677788887788887788889999987531 111111 1223466665677998766 44331
Q ss_pred --CCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhcc
Q 043923 399 --CTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 399 --~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
....+++||+++. .+++++++++++|++++++..+
T Consensus 395 ~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~~ 433 (456)
T 2ez2_A 395 HHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp BCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred cccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 1124789999985 4899999999999999987554
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=263.62 Aligned_cols=298 Identities=13% Similarity=0.116 Sum_probs=222.9
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCc-EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSK-IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~-i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (469)
..++++.++++++ .+.++ +++++|+++++..++.+++++||.|+++.|+|.+ +...+... |++++.+|
T Consensus 48 ~~~~~~~la~~~~--------~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 118 (411)
T 3nnk_A 48 MNEVMALYRGVFR--------TENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRC-RAEVHTIE 118 (411)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHc-CCeEEEEe
Confidence 3556666666664 34554 7889999999999999999999999999999976 77777777 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+ .++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+||+++ +.... .
T Consensus 119 ~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~---~~~~~-~ 184 (411)
T 3nnk_A 119 VP--WGEVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATAS---LGGNP-L 184 (411)
T ss_dssp CC--TTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---BTTBC-C
T ss_pred cC--CCCCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcc---cCCcc-c
Confidence 86 45678999999999753 7899999999999999998 4558889999999999999987 32211 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-------------------------
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS------------------------- 299 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~------------------------- 299 (469)
... ..+.++++.|++|+++ ++.++||++++++. .+.+....
T Consensus 185 ~~~------------~~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~ 250 (411)
T 3nnk_A 185 ETD------------VWGLDAVSAGMQKCLG-GPSGTSPITLSARM-EEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFD 250 (411)
T ss_dssp CTT------------TTTCSEEECCSTTTTC-CCSSEEEEEECHHH-HHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTC
T ss_pred chh------------ccCCcEEEecCccccC-CCCceEEEEECHHH-HHHHhhcccccccccccccccccCCCCcccccc
Confidence 111 2256788999999864 44579999996554 34333221
Q ss_pred -------------ccccCcHHHHHHHHHHhcCchhhHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEE
Q 043923 300 -------------SFGLVSSQTQYLLSALLSDKKFTQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWV 362 (469)
Q Consensus 300 -------------~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~---g~~~~v 362 (469)
..++.+...+.++.+++... .++ +++.+++++++++++.+.|++.|+++..+.+ ++++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 327 (411)
T 3nnk_A 251 LGMVMDYWGPERLNHHTEATTALFGARECARLI---LQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGV 327 (411)
T ss_dssp HHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEE
T ss_pred hHHHHhhhccccCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEE
Confidence 11334556666665555432 233 6778888999999999999999888776543 578888
Q ss_pred ecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ecC-CHHHHHHHHHHHHHHHHhhcc
Q 043923 363 DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANM-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++...+ ..++.+.+++++||.+++|. +...++++||++ +.. +++++++++++|++++++...
T Consensus 328 ~~~~~~~------~~~l~~~l~~~~gi~v~~g~--~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 328 VIPQGIN------GDQARKLMLEDFGIEIGTSF--GPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLKF 392 (411)
T ss_dssp ECCTTCC------HHHHHHHHHHHHSEEEEECC--GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred ECCCCCC------HHHHHHHHHHhcCeEEeCcc--CCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 8864322 23577777777799999884 333467999998 543 799999999999999987654
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=262.91 Aligned_cols=340 Identities=16% Similarity=0.159 Sum_probs=233.5
Q ss_pred CCCeeeeeccccc-c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 37 PTGIIQMGLAENQ-L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
...+|||+.+... + +++.+.+++.+....... + .......|+......+|++.++++++ . +..
T Consensus 58 g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~---~--~~~~~~~~g~~~~~~~l~~~la~~~g--------~--~~~ 122 (409)
T 3kki_A 58 SPDDIILQSNDYLALANHPLIKARLAKSLLEEQQ---S--LFMSASFLQNDYDKPMIEKRLAKFTG--------F--DEC 122 (409)
T ss_dssp CTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCC---C--CCSBGGGGCSTTTSCHHHHHHHHHHT--------C--SEE
T ss_pred CCceEEeeccCccCCcCCHHHHHHHHHHHHHcCC---C--CCccccccCCcHHHHHHHHHHHHHhC--------C--CeE
Confidence 4568999887422 2 234455554432100000 0 00011123333445788999998885 2 234
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
++++++++++..++.+++++||.|+++.|+|..+...+... |++++.++. .|++++++++++. ++++
T Consensus 123 i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~le~~l~~~-----~~~~ 189 (409)
T 3kki_A 123 LLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYA-NAQAHPFMH-------NNCDHLRMLIQRH-----GPGI 189 (409)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHT-TCEEEEECT-------TCHHHHHHHHHHH-----CSCE
T ss_pred EEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHc-CCeEEEecC-------CCHHHHHHHHHhc-----CCeE
Confidence 55555579999999999999999999999999998888877 999988874 4789999999763 5789
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||||.+++ +++|.++|++||++||+||+|+...++... ........ . ..+.++++.|+||++
T Consensus 190 vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~~~~~~~-~------~~~~di~~~s~sK~~ 258 (409)
T 3kki_A 190 IVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNG-AGLLAELG-L------TREVHFMTASLAKTF 258 (409)
T ss_dssp EEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCHHHHHT-C------GGGCSEEEEESSSTT
T ss_pred EEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCC-CcchhhcC-C------CCCCCEEEeecchhh
Confidence 999999999999999 667999999999999999999875443221 12222211 0 124568899999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc--cc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS--FG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC 351 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~--~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v 351 (469)
|.+| ||+++++..+......... +. ..+++.+.++.+.++.. .+ .++.+++++++++++.+.|+++|+++
T Consensus 259 ~~~g---g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~-~~~~~~~~~~~~~~l~~~L~~~g~~~ 331 (409)
T 3kki_A 259 AYRA---GAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII---ES-ADNRRQHLDRMARKLRIGLSQLGLTI 331 (409)
T ss_dssp CSSC---EEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH---HH-CHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCc---eEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 9664 9999976544322221111 11 24455555555555432 21 25677888999999999999998876
Q ss_pred ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 043923 352 LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~ 429 (469)
. ..++++|+.++.. .+..++++.++++ ||.+.|+..+. +.+.+++|++++. .+++++++++++|+++++
T Consensus 332 ~--~~~~~~~~~~~~~------~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~ 402 (409)
T 3kki_A 332 R--SESQIIGLETGDE------RNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVN 402 (409)
T ss_dssp C--CSSSEEEEEEESH------HHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred C--CCCCEEEEEeCCH------HHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 6 3567888888642 2233567777655 99998865442 2346799999975 489999999999999987
Q ss_pred hh
Q 043923 430 SI 431 (469)
Q Consensus 430 ~~ 431 (469)
..
T Consensus 403 ~~ 404 (409)
T 3kki_A 403 YG 404 (409)
T ss_dssp HS
T ss_pred cC
Confidence 53
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=261.95 Aligned_cols=299 Identities=15% Similarity=0.135 Sum_probs=220.7
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (469)
..++++.++++++ .+. ++|++|+|+++++..++.+++++||.|+++.++|.. +...+... |++++.++
T Consensus 58 ~~~l~~~la~~~~--------~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~~~ 128 (393)
T 3kgw_A 58 MEEIKQGIQYVFQ--------TRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRI-GARVHQMI 128 (393)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHc-CCceEEEe
Confidence 4566666766664 333 469999999999999999999999999999988742 24555566 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
++. ++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+||+|+ ++... .
T Consensus 129 ~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~---~g~~~-~ 194 (393)
T 3kgw_A 129 KKP--GEHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVAS---LGGVP-I 194 (393)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---TTTSC-C
T ss_pred CCC--CCCCCHHHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCcc---ccCcc-c
Confidence 874 3468999999999763 7899999999999999998 5568889999999999999987 22221 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc------------------------
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS------------------------ 300 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~------------------------ 300 (469)
... ..+..+++.|+||+++ ++.++||++++++. .+.+.....
T Consensus 195 ~~~------------~~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (393)
T 3kgw_A 195 YMD------------QQGIDIMYSSSQKVLN-APPGISLISFNDKA-KYKVYSRKTKPVSFYTDITYLAKLWGCEGETRV 260 (393)
T ss_dssp CTT------------TTTCCEEEEESSSTTC-CCSSCEEEEECHHH-HHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCC
T ss_pred chh------------hcCCCEEEecCccccc-CCCceeEEEECHHH-HHHHhccCCCCCceeecHHHHHHhhhhccccCC
Confidence 111 2245678889999884 44458999995554 344432110
Q ss_pred -cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecccccccCChhH
Q 043923 301 -FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLRSNTFEA 375 (469)
Q Consensus 301 -~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~----~g~~~~v~~~~~~~~~~~~~ 375 (469)
.++.+...+.++.+++.... ...+++.+++++++++++.+.|+++|+++..+. .++++|+.++... +
T Consensus 261 ~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~ 332 (393)
T 3kgw_A 261 IHHTTPVTSLYCLRESLALIA--EQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGY------N 332 (393)
T ss_dssp CCCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTB------C
T ss_pred CCCCCCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCC------C
Confidence 12345666666655554321 223677888899999999999999988876433 3567788886432 2
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ecC-CHHHHHHHHHHHHHHHHhhcc
Q 043923 376 EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANM-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 376 ~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..++.+.+++++||.+.+|..+. .++++|+++ +.. +++++++++++|++++++.++
T Consensus 333 ~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 333 WRDIVSYVLDHFSIEISGGLGPT--EERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp HHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred HHHHHHHHHHhCCEEEeCCcccC--CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 33577777766699999987543 467999998 643 899999999999999988765
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-31 Score=265.18 Aligned_cols=340 Identities=14% Similarity=0.102 Sum_probs=230.9
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCC---CcHH--HHHHHH-HHHHhHcCCCCCCCC
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYH---GLPA--FKKALV-EFMSEIRGNKVTFDT 111 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~~~--Lr~aia-~~l~~~~~~~~~~~~ 111 (469)
.++|||+.++|++ ++.+.+++.+.... .....|+... |.+. ++++++ +.+.+.++ .++
T Consensus 23 ~~~i~~~~~~~~~-~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g----~~~ 86 (407)
T 2dkj_A 23 REGLELIASENFV-SKQVREAVGSVLTN-----------KYAEGYPGARYYGGCEVIDRVESLAIERAKALFG----AAW 86 (407)
T ss_dssp HTSEECCTTCCCC-CHHHHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSE
T ss_pred hcceeeccCCCCC-CHHHHHHHHhhhhc-----------CcccCCCcccccCCchHHHHHHHHHHHHHHHHhC----CCc
Confidence 4679999999998 55566666553110 0123454332 4343 444322 23443333 455
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH---HHHhhhCCC--EEEEeeccCCCCcccCHHHHHHHHHHHH
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD---RDLKWRTGV--EIVPIQCTSLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~---~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 186 (469)
++|++++|+ +|+..++.+++++||.|+++.|+|..+. ..+... |. ..+++++++ .++.+|++++++++++.
T Consensus 87 ~~i~~~sGt-~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~- 162 (407)
T 2dkj_A 87 ANVQPHSGS-QANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFS-GKLYKVVSYGVRP-DTELIDLEEVRRLALEH- 162 (407)
T ss_dssp EECCCSSHH-HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECCCT-TTSSCCHHHHHHHHHHH-
T ss_pred ceEEecchH-HHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhc-CceEEEEecCCCc-ccCccCHHHHHHHHhhc-
Confidence 667777775 5999999999999999999999998883 444444 66 444444342 35779999999999742
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc-cccCCCCccchhhhhhccccccCCcCCeEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTQVWNRVH 265 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i 265 (469)
++++|++++|+|| ...+ +++|.++|++||+++|+||+|+. +.+.+.. .+. + . ..++
T Consensus 163 ----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~-~~~--~-~----------~~di 219 (407)
T 2dkj_A 163 ----RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLH-PNP--L-P----------YAHV 219 (407)
T ss_dssp ----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCS-CCC--T-T----------TCSE
T ss_pred ----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCcc-CCc--c-c----------cccE
Confidence 6889999999998 4555 67799999999999999999986 3333321 111 1 1 2568
Q ss_pred EEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHH
Q 043923 266 IVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVS 342 (469)
Q Consensus 266 ~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 342 (469)
+++|+||.+ +|.|+||++++++.+.+.+......+ ..+.....++.+++.... ..++++.+++++++++++.+
T Consensus 220 ~~~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~ 295 (407)
T 2dkj_A 220 VTSTTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL--QPEFKEYSRLVVENAKRLAE 295 (407)
T ss_dssp EEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHH
Confidence 899999955 68899999997455555554433222 223333334445554311 23567788888999999999
Q ss_pred HHHhcCCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCC----CCCCCCeEEEEeec-----C
Q 043923 343 GLEKAGISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC----HCTEPGWFRVCFAN-----M 412 (469)
Q Consensus 343 ~L~~~g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f----~~~~~~~iRi~~~~-----~ 412 (469)
.|+++|+++.. +..++++|+.++... .+..++.+.+ .++||.+.+|..| ....++++|++++. .
T Consensus 296 ~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~ 369 (407)
T 2dkj_A 296 ELARRGYRIVTGGTDNHLFLVDLRPKG-----LTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGF 369 (407)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECGGGT-----CCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred HHHhCCceeecCCCCceEEEEECcccC-----CCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCC
Confidence 99998888775 356789999987421 1123455555 5789999998754 22346789999963 5
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 043923 413 SEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 413 ~~e~i~~~l~~L~~~l~~ 430 (469)
+++++++++++|++++++
T Consensus 370 ~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 370 TPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 899999999999999987
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=270.19 Aligned_cols=350 Identities=11% Similarity=0.077 Sum_probs=229.3
Q ss_pred CCCeeeeecccc--cc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAEN--QL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+.+ ++ +++.+.+++.+...... .....|.+..+..+|+++|++++. + . .++
T Consensus 40 g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~---------~~~~~~~~~~~~~~l~~~la~~~~---~---~-~~~ 103 (426)
T 1sff_A 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS---------HTCFQVLAYEPYLELCEIMNQKVP---G---D-FAK 103 (426)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCS---------CCCTTTEECHHHHHHHHHHHHHSS---C---S-SCE
T ss_pred CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCC---------CccccccCCHHHHHHHHHHHHhCC---c---c-ccc
Confidence 346899988875 33 44666666665321100 011135556688999999999983 1 1 358
Q ss_pred cEEEeCChHHHHHHHHH---HhcCCCCEEEEccCCCcChHH-HHhhhCCCE-------------EEEeeccC---CCCcc
Q 043923 113 KIVLTAGATSANETLMF---CLAEPGEAFLLPTPYYPGFDR-DLKWRTGVE-------------IVPIQCTS---LNGFQ 172 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~---~l~~~gd~Vl~~~P~y~~~~~-~~~~~~g~~-------------~~~v~~~~---~~~~~ 172 (469)
+|++|+|+++|+..++. .+.++| .|++++|+|+.+.. .+... |.+ ++.+|++. ..++.
T Consensus 104 ~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 181 (426)
T 1sff_A 104 KTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALT-GKVNPYSAGMGLMPGHVYRALYPCPLHGISED 181 (426)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHS-SCCTTTTTTSCCCCSSEEEECCCBGGGTBCHH
T ss_pred EEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhc-CCccccccccCCCCCCcEEeCCCccccccchH
Confidence 99999999999999988 677777 89999999987654 34433 543 66666642 12345
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEE-ecCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhh
Q 043923 173 ITETAIEEAYQLAQKRHLKVKGVLV-TNPSNPLG-TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250 (469)
Q Consensus 173 ~d~~~l~~~i~~~~~~~~~~~~vvl-~~P~NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~ 250 (469)
+|++++++++++.. ..+++++|++ ++|+| || .++|.+++++|.++|++||++||+||+|.++.+.+.. .++ +..
T Consensus 182 ~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~-~~~ 257 (426)
T 1sff_A 182 DAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL-FAM-EQM 257 (426)
T ss_dssp HHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGG-GGT
T ss_pred HHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccch-hhh-hhc
Confidence 78899998886310 0126777665 34577 99 7889999999999999999999999999975443321 111 111
Q ss_pred hccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHHHHHH
Q 043923 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQNYISE 328 (469)
Q Consensus 251 ~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 328 (469)
+..+.+.||||++|. |+|+||++++++ +.+.+... ...+..+++++.++.++|+.... ..
T Consensus 258 -----------~~~~di~s~sK~~~~-GlriG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~-----~~ 319 (426)
T 1sff_A 258 -----------GVAPDLTTFAKSIAG-GFPLAGVTGRAE-VMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-----EN 319 (426)
T ss_dssp -----------TSCCSEEEECGGGGT-SSCCEEEEEEHH-HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-----TT
T ss_pred -----------CCCCCEEEEcccccC-CCceEEEEEcHH-HHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHh-----cC
Confidence 112223499999995 999999999654 43333221 12234678888888766643210 12
Q ss_pred HHHHHHHHHHHHHHHHHhcC--C---ceecCCceEEEEEeccccccc--CChhHHHHHHHHHHHhCCeEEeCCCCCCCCC
Q 043923 329 NKKRLKQRHRKLVSGLEKAG--I---SCLKSNAGLFCWVDMRHLLRS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTE 401 (469)
Q Consensus 329 ~~~~l~~~~~~l~~~L~~~g--~---~v~~~~~g~~~~v~~~~~~~~--~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~ 401 (469)
..+++++.++++.+.|++++ + ....+. |+|+|++++..... ....+..+++..++ ++||.+.||..|
T Consensus 320 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~---- 393 (426)
T 1sff_A 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY---- 393 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHH-HCCcEEecCCCC----
Confidence 23444555555665555431 2 223344 58999998532110 01123445677766 569999998764
Q ss_pred CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 402 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 402 ~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
++++||+++. .+++++++++++|++++++.+
T Consensus 394 ~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 394 YNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 5789999973 599999999999999987654
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=256.56 Aligned_cols=336 Identities=10% Similarity=0.135 Sum_probs=227.8
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.+++|||+.+.+..+++.+.+++.+... .....|+......++++.++++++ .+++|++
T Consensus 6 ~~~~id~~~~~~~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g---------~~~~v~~ 64 (356)
T 1v72_A 6 RPPALGFSSDNIAGASPEVAQALVKHSS------------GQAGPYGTDELTAQVKRKFCEIFE---------RDVEVFL 64 (356)
T ss_dssp CCCCCBCSCGGGCCCCHHHHHHHHHTTS------------SCCCSTTCSHHHHHHHHHHHHHHT---------SCCEEEE
T ss_pred CCceEeeccCCccCCCHHHHHHHHhhcc------------CcccccccchHHHHHHHHHHHHhC---------CCCcEEE
Confidence 3478999988655566777777776411 112345433334556666666553 2446999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH--HhhhC-CCEEEEeeccCCCCcccCHHHHHH-HHHHHH-hcCCc
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD--LKWRT-GVEIVPIQCTSLNGFQITETAIEE-AYQLAQ-KRHLK 191 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~--~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~-~i~~~~-~~~~~ 191 (469)
++|+++++..++.+++++||.|+++.|+|..+... +.... |++++.+|.+ ++.+|++++++ ++++.. ..+++
T Consensus 65 ~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 65 VPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp ESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCE
T ss_pred eCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCC
Confidence 99999999999999999999999999998765544 44433 8899999875 36789999998 775310 11236
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc--CCCCccchhhhhhccccccCCcCCeEEEEcc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF--SSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S 269 (469)
+++|++++|+| ||.+++.+++++|+++|++||++||+|++|..+.. .+.. .....+.. ...+++.|
T Consensus 142 ~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-~~~~~~~~----------~~d~~~~s 209 (356)
T 1v72_A 142 PACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS-PAEMTWKA----------GVDALSFG 209 (356)
T ss_dssp EEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC-TTTTTGGG----------TCCEEEEC
T ss_pred ceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC-HHHhhhhh----------cCCEEEEe
Confidence 89999999987 99999999999999999999999999999975321 1221 11111101 12234559
Q ss_pred CccccCCCcceEEEEEecCHHHHHHHHHhcc-ccc---CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043923 270 LSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-FGL---VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE 345 (469)
Q Consensus 270 ~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~-~~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 345 (469)
+||+ |. .+..||++++++.+ +.+..... .+. .+...+..+...+.+..+ ....+++.++++++.+.|+
T Consensus 210 ~sK~-g~-~~G~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~ 281 (356)
T 1v72_A 210 ATKN-GV-LAAEAIVLFNTSLA-TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGLE 281 (356)
T ss_dssp CGGG-TC-SSCEEEEESSGGGH-HHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHT
T ss_pred cccC-CC-cCccEEEEECHHHH-hhHHHHhhccCchhhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHh
Confidence 9998 53 34455888755443 33322211 111 122333334455655322 3345666778889999998
Q ss_pred hc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHH
Q 043923 346 KA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 423 (469)
Q Consensus 346 ~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~ 423 (469)
++ |+++..+.+++|+|++++. ++++.+. ++||.+.||. |+ ++++|++++. .+++++++++++
T Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~l~-~~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~ 345 (356)
T 1v72_A 282 GLGGVEVLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQ 345 (356)
T ss_dssp TCTTEEEESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHH
T ss_pred hCCCcEEccCCCccEEEEEcCH-----------HHHHHHH-hcCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHH
Confidence 85 8887767778899998762 4666664 6699999987 54 6799999875 489999999999
Q ss_pred HHHHHHhhc
Q 043923 424 LKAFVDSIT 432 (469)
Q Consensus 424 L~~~l~~~~ 432 (469)
|++++++.+
T Consensus 346 l~~~l~~~~ 354 (356)
T 1v72_A 346 VRLAADRTQ 354 (356)
T ss_dssp HHHTC----
T ss_pred HHHHHHhhc
Confidence 999876543
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=264.27 Aligned_cols=332 Identities=12% Similarity=0.077 Sum_probs=232.9
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCC----CCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQ----DYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~----~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
+.+.|+.+.+..+++.+.+++.+...... ......|+ ...+..++++++|++++ +++++|
T Consensus 26 ~~~~ld~~~~~~~~~~v~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v 89 (406)
T 3cai_A 26 GWVHFDAPAGMLIPDSVATTVSTAFRRSG--------ASTVGAHPSARRSAAVLDAAREAVADLVN--------ADPGGV 89 (406)
T ss_dssp SCEECBGGGCCCCCHHHHHHHHHHHHHCC--------SSSCSSSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGE
T ss_pred CeEEEeCCCcCCCCHHHHHHHHHHHHhcC--------CCCCCccHHHHHHHHHHHHHHHHHHHHhC--------CCCCeE
Confidence 47889888887666666666655311000 00001232 12356888999999885 567899
Q ss_pred EEeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChHHHHhh----hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 115 VLTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFDRDLKW----RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
++|+|+++++.+++.++ +++||.|+++.|+|..+...+.. . |++++.+++++ .++.+|++++++++++
T Consensus 90 ~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~v~~v~~~~-~~~~~d~~~l~~~l~~--- 164 (406)
T 3cai_A 90 VLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRY-GAKVKWAEVDI-ETGELPTWQWESLISK--- 164 (406)
T ss_dssp EEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHH-BCEEEEECCCT-TTCCCCGGGHHHHCCT---
T ss_pred EEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhc-CCeEEEEecCc-ccCCcCHHHHHHHhCC---
Confidence 99999999999999887 78999999999999987655443 5 99999999873 2456899999988864
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIV 267 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i 267 (469)
++++|++++|+||||.+++. ++|.++|+++|++||+||+|+. +... .++..+ +.++++
T Consensus 165 ---~~~~v~~~~~~nptG~~~~l---~~i~~l~~~~~~~li~D~a~~~---g~~~-~~~~~~------------~~d~~~ 222 (406)
T 3cai_A 165 ---STRLVAVNSASGTLGGVTDL---RAMTKLVHDVGALVVVDHSAAA---PYRL-LDIRET------------DADVVT 222 (406)
T ss_dssp ---TEEEEEEESBCTTTCBBCCC---HHHHHHHHHTTCEEEEECTTTT---TTCC-CCHHHH------------CCSEEE
T ss_pred ---CceEEEEeCCcCCccccCCH---HHHHHHHHHcCCEEEEEccccc---CCCC-CCchhc------------CCCEEE
Confidence 78999999999999999984 5688899999999999999973 2111 222222 466888
Q ss_pred ccCccccCCCcceEE-EEEecCHHHHHHHHHhcc-----------cccCcHHHHHHHHHHhcCchh------------hH
Q 043923 268 YSLSKDLGLPGFRVG-AIYSNDDMVVAAATKMSS-----------FGLVSSQTQYLLSALLSDKKF------------TQ 323 (469)
Q Consensus 268 ~S~SK~~g~~GlRiG-~li~~~~~~~~~~~~~~~-----------~~~~s~~~q~~~~~~l~~~~~------------~~ 323 (469)
.|+||.+| ++ +| |+++++. +.+.+..... .++.+...+.++.+++..... +.
T Consensus 223 ~s~~K~~g-~~--~G~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~ 298 (406)
T 3cai_A 223 VNAHAWGG-PP--IGAMVFRDPS-VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLA 298 (406)
T ss_dssp EEGGGGTS-CS--CEEEEESCHH-HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHH
T ss_pred eehhhhcC-CC--cCeEEEEehH-HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhh
Confidence 99999887 65 89 9998543 4333322211 233455555444444421110 02
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC---ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC----
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKA-GISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS---- 395 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~---- 395 (469)
+++++.+++++++++++.+.|+++ ++++..+. ++ ++++.++.. +..++.+.|. ++||.+.+|.
T Consensus 299 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~L~-~~gi~v~~g~~~~~ 369 (406)
T 3cai_A 299 VSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKV-------PADRVVQRLA-DNGILAIANTGSRV 369 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETTB-------CHHHHHHHHH-HTTEECEECCSCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECCc-------CHHHHHHHHH-HCCcEEecCChHHH
Confidence 256778888899999999999987 77776653 44 678887631 1234666654 6799999987
Q ss_pred --CCCCC-CCCeEEEEeec-CCHHHHHHHHHHHHH
Q 043923 396 --SCHCT-EPGWFRVCFAN-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 396 --~f~~~-~~~~iRi~~~~-~~~e~i~~~l~~L~~ 426 (469)
.|+.. ..+++|++++. .+++++++++++|++
T Consensus 370 ~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 370 LDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp HHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 33322 35789999986 379999999999875
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=260.79 Aligned_cols=298 Identities=12% Similarity=0.138 Sum_probs=221.0
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEE-EeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIV-LTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~-~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (469)
..++++.++++++ .+++.++ +++|+++++..++.+++++||.|+++.|+|.. +...+... |++++.+|
T Consensus 46 ~~~l~~~la~~~g--------~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 116 (416)
T 3isl_A 46 MNETMEMLRELFQ--------TKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERY-GANVHMLE 116 (416)
T ss_dssp HHHHHHHHHHHTT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhc-CCeeEEEe
Confidence 4555666666554 4566665 88999999999999999999999999999987 55666666 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
++. ++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+|++|+. .... .
T Consensus 117 ~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---~~~~-~ 182 (416)
T 3isl_A 117 CEW--GTVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATI---GGCE-V 182 (416)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTT---TTSC-C
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccc---cCCC-c
Confidence 874 3468999999999742 7899999999999999999 55689999999999999999872 2211 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-------------------------
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS------------------------- 299 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~------------------------- 299 (469)
... ..+..+++.|++|+++ ++.++|+++++++.+ +.+....
T Consensus 183 ~~~------------~~~~d~~~~s~~K~l~-g~~g~g~~~~~~~~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~ 248 (416)
T 3isl_A 183 KVD------------EWKIDAAIGGTQKCLS-VPSGMAPITYNERVA-DVIAARKKVERGIATQADRAALSGNRPITSNY 248 (416)
T ss_dssp CTT------------TTTCSEEECCSSSTTC-CCSSEEEEEECHHHH-HHHHTC------------------CCCCSCST
T ss_pred chh------------hcCCCEEEecCccccC-CCCCeEEEEECHHHH-HHhhccccccccccccccchhccCCCCCCccc
Confidence 111 2246788999999854 445689999965543 3332110
Q ss_pred ---------------ccccCcHHHHHHHHHHhcCchhhHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEE
Q 043923 300 ---------------SFGLVSSQTQYLLSALLSDKKFTQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFC 360 (469)
Q Consensus 300 ---------------~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~---g~~~ 360 (469)
..++.+...+.++.+++... .++ +++.+++++++++++.+.|++.|+++..+.+ +.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 325 (416)
T 3isl_A 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVRLV---LEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVT 325 (416)
T ss_dssp TCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEE
T ss_pred cchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEE
Confidence 12234566666665655432 333 6788889999999999999998888876653 5688
Q ss_pred EEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHH-HHHHHHHHHHHHHhhcc
Q 043923 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDT-LKLSMQRLKAFVDSITT 433 (469)
Q Consensus 361 ~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~-i~~~l~~L~~~l~~~~~ 433 (469)
++.++... +..++.+.|++++||.+.+|.. ...++++|+++.. .++++ +++++++|++++++...
T Consensus 326 ~~~~~~~~------~~~~l~~~L~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 392 (416)
T 3isl_A 326 CVEIPGGI------DGESVRDMLLAQFGIEIASSFG--PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNA 392 (416)
T ss_dssp EEECCTTC------CHHHHHHHHHHHHCEECBCCCS--TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCC------CHHHHHHHHHHhCCEEEecCCC--CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 88886422 2335777777667999999873 2346799999943 35556 99999999999987754
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=258.48 Aligned_cols=295 Identities=11% Similarity=0.053 Sum_probs=217.2
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEEe
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVPI 163 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~v 163 (469)
.+..++++.++++++ ++.++++|++|+|+++|+..++.++.+ |.|+++.|.|+.+ ...+... |++++.+
T Consensus 33 ~~~~~l~~~la~~~g------~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~-g~~~~~v 103 (353)
T 2yrr_A 33 RVNRAIQERLAALFD------PGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAALH-GLDPEVL 103 (353)
T ss_dssp HHHHHHHHHHHHHHC------CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHHHHhC------CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHc-CCceEEE
Confidence 346788888888885 223478899999999999999999876 8999999998875 3444555 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
|.+. ++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+||+|+ ++...
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~---~~~~~- 169 (353)
T 2yrr_A 104 DFPP--GEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT---LGMLP- 169 (353)
T ss_dssp ECCT--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT---TTTSC-
T ss_pred eCCC--CCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc---ccccc-
Confidence 9874 4578999999998742 6789999999999999998 4568889999999999999996 33222
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEecCHHHHHHHH-----------------HhcccccCc
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYSNDDMVVAAAT-----------------KMSSFGLVS 305 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~~~~~~~~~~~-----------------~~~~~~~~s 305 (469)
.++..+ +..+++.|++|++ |.+| +||++++++.+ +.+. .....++.+
T Consensus 170 ~~~~~~------------~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (353)
T 2yrr_A 170 FSMRAM------------GVDYAFTGSQKCLSAPPG--LAPIAASLEAR-KAFTGKRGWYLDLARVAEHWERGGYHHTTP 234 (353)
T ss_dssp CCHHHH------------TCSEEECCTTSTTCCCSS--CEEEEECHHHH-HHCCCCSCSTTCHHHHHHHHTTCCCSSCCC
T ss_pred cccccc------------CceEEEecCcccccCCCc--eEEEEECHHHH-HHhccCCCccccHHHHhhhhhcCCCCCCCC
Confidence 222222 3457788999966 4455 79999966544 2221 111223456
Q ss_pred HHHHHHHHHHhcCchhhHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCC--ceEEEEEecccccccCChhHHHHHHHH
Q 043923 306 SQTQYLLSALLSDKKFTQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSN--AGLFCWVDMRHLLRSNTFEAEMELWKK 382 (469)
Q Consensus 306 ~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~--~g~~~~v~~~~~~~~~~~~~~~~l~~~ 382 (469)
...+.++.+++... .+. +++.+++++++++++.+.|++.|+++.++. +++++|+.++... +..++.+.
T Consensus 235 ~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 305 (353)
T 2yrr_A 235 VLLHYALLEALDLV---LEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGV------DADRLVRA 305 (353)
T ss_dssp HHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCC------CHHHHHHH
Confidence 66666666665432 222 567788889999999999998888877654 5677788886321 12356666
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHH-HHHHHHHHHHHh
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLK-LSMQRLKAFVDS 430 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~-~~l~~L~~~l~~ 430 (469)
+. ++||.+.+|..|. .++++|+++.. .++++++ +++++|++++++
T Consensus 306 l~-~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 306 LY-AEGVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HH-HTTEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HH-HCCEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 66 4599999998664 35789999943 5889999 999999998764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=260.21 Aligned_cols=322 Identities=15% Similarity=0.134 Sum_probs=224.6
Q ss_pred CCCeeeeecccc--cc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAEN--QL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+|||+.+.+ ++ +++.+.+++.+..... ......|+ ..+..+|+++++++++ + ++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~---------~~~~~~y~-~~~~~~l~~~la~~~g--------~-~~ 87 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL---------LHVSNLYE-NPWQEELAHKLVKHFW--------T-EG 87 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC---------SCCCTTBC-CHHHHHHHHHHHHTSS--------S-CE
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhc---------cccCcccC-CHHHHHHHHHHHhhcC--------C-CC
Confidence 346899998863 44 3456666665431100 01123564 3467899999999874 3 48
Q ss_pred cEEEeCChHHHHHHHHHH---hc---CCC-CEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCCCccc
Q 043923 113 KIVLTAGATSANETLMFC---LA---EPG-EAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLNGFQI 173 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~---l~---~~g-d~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~ 173 (469)
+|++|+|+++|+..++.+ +. ++| |.|++++|+|+.+...+....+.. +..++. .
T Consensus 88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 160 (375)
T 2eh6_A 88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------N 160 (375)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------T
T ss_pred eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------c
Confidence 999999999999999875 45 788 999999999998866554431221 333332 4
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhc
Q 043923 174 TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 252 (469)
Q Consensus 174 d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~ 252 (469)
|++++++++++ ++++|++++|+||||.+ .+.+++++|.++|++||+++|+||+|+++...+.. .++..+ .
T Consensus 161 d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~-~- 231 (375)
T 2eh6_A 161 DIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF-YAYQHF-N- 231 (375)
T ss_dssp CHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGG-T-
T ss_pred hHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-hhhhhc-C-
Confidence 78888887753 78999999999999998 56888999999999999999999999974332221 122211 1
Q ss_pred cccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHHHHHHhcCchhhHHHHHHHH
Q 043923 253 RNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFTQNYISENK 330 (469)
Q Consensus 253 ~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 330 (469)
...+++ |+||.++ +|+|+||++++++ +.+.+.. ....+..+++.+.++.++|+.. .+..
T Consensus 232 -------~~~d~~---s~SK~~~-~g~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~ 292 (375)
T 2eh6_A 232 -------LKPDVI---ALAKGLG-GGVPIGAILAREE-VAQSFTPGSHGSTFGGNPLACRAGTVVVDEV-------EKLL 292 (375)
T ss_dssp -------CCCSEE---EECGGGG-TTSCCEEEEEEHH-HHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH-------HHHH
T ss_pred -------CCCCEE---EEccccc-CCCCeEEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHH
Confidence 112333 8889999 7999999999654 4333332 1222335777887777666432 1556
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee
Q 043923 331 KRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 410 (469)
Q Consensus 331 ~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~ 410 (469)
++++++++++.+.|++++....++ .|+|+|++++.. ..++++.++ ++||.+.|+. ++++|++++
T Consensus 293 ~~~~~~~~~l~~~L~~~~~~~~~~-~g~~~~~~~~~~--------~~~~~~~l~-~~gi~~~~~~------~~~iRi~~~ 356 (375)
T 2eh6_A 293 PHVREVGNYFKEKLKELGKGKVKG-RGLMLGLELERE--------CKDYVLKAL-EKGLLINCTA------GKVLRFLPP 356 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTSSEEEE-ETTEEEEECSSC--------CHHHHHHHH-HTTEECEEET------TTEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCceE-EEEEEEEEEcCc--------HHHHHHHHH-HCCCEEecCC------CCEEEEECC
Confidence 777888899999998876544444 457899988741 124666665 5799999862 578999987
Q ss_pred c-CCHHHHHHHHHHHHHHH
Q 043923 411 N-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 411 ~-~~~e~i~~~l~~L~~~l 428 (469)
. .+++++++++++|++++
T Consensus 357 ~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 357 LIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp TTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 4 59999999999998763
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=259.24 Aligned_cols=356 Identities=11% Similarity=0.055 Sum_probs=213.6
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+ .+++. ++.+.+++.+. +.....|....+..++++++++++.+.++ .+++
T Consensus 28 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~~~ 90 (430)
T 3i4j_A 28 GRRYLDGSSGALVANIGHGRAEVGERMAAQ-------------AARLPFVHGSQFSSDVLEEYAGRLARFVG----LPTF 90 (430)
T ss_dssp SCEEEETTHHHHTCTTCBCCHHHHHHHHHH-------------HHHCCCCCTTTCEEHHHHHHHHHHHHHTT----CTTC
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHH-------------HHhcccccccccCCHHHHHHHHHHHHhCC----CCCC
Confidence 3468999987 56653 46666666542 12223344444556777788887777654 5678
Q ss_pred cEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCCcChHHHHhhhCCC--------------EEEEeeccCCCC
Q 043923 113 KIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGFDRDLKWRTGV--------------EIVPIQCTSLNG 170 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~~g~--------------~~~~v~~~~~~~ 170 (469)
+|++|+|+++|+..++.++. .+++.|++.+|+|+++...+....+. .+..+|.+ +.
T Consensus 91 ~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 168 (430)
T 3i4j_A 91 RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKP--DP 168 (430)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCC--CT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCC--cc
Confidence 99999999999999999886 44789999999999877554433122 12222221 11
Q ss_pred ---cccCHHHHHHHHHHHHhcCCceeEEEEecC-CC-CCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 171 ---FQITETAIEEAYQLAQKRHLKVKGVLVTNP-SN-PLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 171 ---~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~N-PtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
...|+++|++++++.. ..+++ +++++| +| ++|. +++.+++++|.++|++||+++|+||+|.++...+.. .
T Consensus 169 ~~~~~~~~~~le~~l~~~~--~~~~~-~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~-~ 244 (430)
T 3i4j_A 169 ARNGAEDAEGLRALLEREG--PETVA-AFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP-L 244 (430)
T ss_dssp TSCHHHHHTHHHHHHHHHC--GGGEE-EEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-S
T ss_pred cchhhHHHHHHHHHHHhcC--CCCEE-EEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch-h
Confidence 1135588888887420 01444 455566 56 8886 678888999999999999999999999986444332 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH------hcccccCcHHHHHHHHHHhc
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK------MSSFGLVSSQTQYLLSALLS 317 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~------~~~~~~~s~~~q~~~~~~l~ 317 (469)
. ....+. ...++ .+|||+++ +| +|+||++++ +.+.+.+.. ....+..+++++.++.++|+
T Consensus 245 ~-~~~~~~-------~~~di---~t~sK~l~-~G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 311 (430)
T 3i4j_A 245 A-LSRWSG-------VTPDI---AVLGKGLA-AGYAPLAGLLAA-PQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLD 311 (430)
T ss_dssp G-GGGTTT-------CCCSE---EEECGGGT-TTSSCCEEEEEC-HHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHH
T ss_pred h-hhhhcC-------CCCcE---EEEccccc-CCccccEEEEEC-HHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHH
Confidence 1 112100 11222 37899999 69 999999995 445555543 22334578899988888886
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecccccccCC---hhHHHHHHHHHHHhCCeEEeC
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNT---FEAEMELWKKIVYDVKLNISP 393 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~~---~~~~~~l~~~ll~~~GI~v~p 393 (469)
.... .+..++.++..+..++.+.+.+.++ ++...++.+ .|+++.+.+...... .....++++.++ ++||.++|
T Consensus 312 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~ 388 (430)
T 3i4j_A 312 IVER-EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTG-LLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYP 388 (430)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET-TEEEEEEC------------CHHHHHHHHH-HTTEECC-
T ss_pred HHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEE-EEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEe
Confidence 4221 2223444444444444455544444 344555554 678788753211000 011235666666 66999999
Q ss_pred CCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 394 GSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 394 g~~f~-~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+..+. ....+++||+++. .+++++++++++|++++++.
T Consensus 389 ~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 389 GSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 84332 2346789999885 49999999999999998754
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=252.48 Aligned_cols=327 Identities=12% Similarity=0.055 Sum_probs=214.4
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
+++|++.++++.+ ++.+.+++.. |. +...+.+++++.+.+.++ .. ++++++++
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~~--------------------~~---~~~~~~~~~~~~~a~~~g--~~-~~~~~~~~ 82 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLNT--------------------YI---GSSYFAEKVNEYGLKHLG--GD-ENDKCVGF 82 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHTS--------------------TT---HHHHHHHHHHHHHHHHHT--CC-TTEEEEEE
T ss_pred ceeeecccCCCCCCCHHHHHHHHH--------------------hc---CchHHHHHHHHHHHHHhC--CC-CcceEEEE
Confidence 4789998775554 4555555542 11 113444555555544444 11 34789999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHH---HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDR---DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+++++..++.++ +||.|+++.|+|+++.. .+... |++++.+ .|+++++++ + +++++
T Consensus 83 ~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~-g~~~~~v---------~d~~~l~~~-~------~~~~~ 143 (374)
T 2aeu_A 83 NRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIV-NAKYFES---------DKVGEILNK-I------DKDTL 143 (374)
T ss_dssp SSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE---------SCHHHHHTT-C------CTTEE
T ss_pred cChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHc-CcEEEEe---------CCHHHHHhc-C------CCccE
Confidence 99999999999988 99999999998877544 45555 9999887 167777765 3 27899
Q ss_pred -EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 195 -VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 195 -vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
|++++|+||||. +..++++|.++|++||+++|+||+|+.+........+.... +.+++++|+||+
T Consensus 144 ~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~------------~~di~~~S~sK~ 209 (374)
T 2aeu_A 144 VIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL------------GADLVVTSTDKL 209 (374)
T ss_dssp EEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH------------TCSEEEEETTSS
T ss_pred EEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc------------CCcEEEecCccc
Confidence 999999999998 78899999999999999999999998652101100112222 346888999998
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcc-c-ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHH----HHHHHHHHHHHhc
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSS-F-GLVSSQTQYLLSALLSDKKFTQNYISENKKRLK----QRHRKLVSGLEKA 347 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~----~~~~~l~~~L~~~ 347 (469)
+ +|+|+||++++++ +.+.+..... + +.++++.+.++.+.+.... .+.+++..+..+ ++++.+.+.|...
T Consensus 210 l--~g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 284 (374)
T 2aeu_A 210 M--EGPRGGLLAGKKE-LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN--LERIRKAFERAKNFDLSKIEKLNKELKAI 284 (374)
T ss_dssp S--SSCSCEEEEEEHH-HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHHHHHHTTT
T ss_pred c--cCcceEEEEECHH-HHHHHHHhhccccCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5 5789999998654 4444443332 2 2367788888877776532 111122211111 1245566666552
Q ss_pred ----CCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC--CHHHHHHH
Q 043923 348 ----GISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM--SEDTLKLS 420 (469)
Q Consensus 348 ----g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~--~~e~i~~~ 420 (469)
|+.+.+ +.+.+|.|.+.+.... ..++.+++..+++++||.++||..|. ..++++||+++.. .+.+++++
T Consensus 285 ~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~~g~~~~-~~~~~lRi~~~~~~~~~~~l~~l 360 (374)
T 2aeu_A 285 DDNINIVYERTPTGFVIKRVYKDDTIN---IKKLIEIGFNLLKNYGIITITVAGMP-GASKSLRIDLTSRDAERIDDNYI 360 (374)
T ss_dssp CTTEEEEEEECSSEEEEEEEESSHHHH---HHHHHHHHHHHHHHHCEECSTTSSSC-SSCCSEEEETTSGGGGGSCHHHH
T ss_pred hhccCcceeeCCceEEEEeeccccccc---ccchHHHHHHHHHhCCEEEecCCCCC-CCCCeEEEEcCCchHHHHHHHHH
Confidence 556644 4444455555442111 01223466677878899999998773 3456899999742 23348888
Q ss_pred HHHHHHHHHhhcc
Q 043923 421 MQRLKAFVDSITT 433 (469)
Q Consensus 421 l~~L~~~l~~~~~ 433 (469)
++.|++++++..+
T Consensus 361 ~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 361 IKAIVESIKMAFK 373 (374)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887654
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=253.90 Aligned_cols=336 Identities=14% Similarity=0.065 Sum_probs=219.8
Q ss_pred CCCeeeeeccc--cccC---hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC-
Q 043923 37 PTGIIQMGLAE--NQLS---FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD- 110 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~- 110 (469)
...+||++.+. |+++ ++.+.+++.+... ....|+...+..+++.++++.+.+.++ ++
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~la~~~~----~~~ 103 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQ-------------KLAHAAANDFYNIPQLELAKKLVTYSP----GNF 103 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHT-------------TSCCCSCSCSCCHHHHHHHHHHHHHSS----CSS
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHh-------------hCccccccccCCHHHHHHHHHHHHhCC----CCc
Confidence 34689998887 4552 4666666655311 111122111222334444444444433 44
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-CCCEEEEccCCCcChHHHHhhhCC-------------CEEEEeeccCCCCcc----
Q 043923 111 TSKIVLTAGATSANETLMFCLAE-PGEAFLLPTPYYPGFDRDLKWRTG-------------VEIVPIQCTSLNGFQ---- 172 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~-~gd~Vl~~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~---- 172 (469)
+++|++|+|+++|+..+++++.. +||.|++.+|+|+++...+....| ..++.+|.+. .|.
T Consensus 104 ~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~g 181 (419)
T 2eo5_A 104 QKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPN--PYRNPWH 181 (419)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCC--SSSCTTC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCc--ccccccc
Confidence 78999999999999999987643 489999999999865443221111 2566777642 232
Q ss_pred ------------cCHHHHH-HHHHHHHhcCCceeEEEEecCC-CCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 173 ------------ITETAIE-EAYQLAQKRHLKVKGVLVTNPS-NPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 173 ------------~d~~~l~-~~i~~~~~~~~~~~~vvl~~P~-NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
+|+++++ +++++. ....+++ +++++|+ ||||. +.+.+++++|.++|++||+++|+||+|.++.
T Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g 259 (419)
T 2eo5_A 182 INGYENPSELVNRVIEFIEDYIFVNL-VPPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLG 259 (419)
T ss_dssp CCTTTCHHHHHHHHHHHHHHTHHHHT-CCGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ccccccchhhHHHHHHHHHHHHHhhc-cCCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 3578888 877631 0001454 5667785 57896 6789999999999999999999999999854
Q ss_pred cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHH-HhcccccCcHHHHHHHHHH
Q 043923 238 FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAAT-KMSSFGLVSSQTQYLLSAL 315 (469)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~-~~~~~~~~s~~~q~~~~~~ 315 (469)
+.+.. ....... ...+++ ||||+|| +| +|+||++++++.+ . +. .....+..+++++.++.++
T Consensus 260 ~~g~~--~~~~~~~--------~~~d~~---t~sK~~~-~G~~riG~~~~~~~~~-~-~~~~~~~t~~~n~~~~~aa~aa 323 (419)
T 2eo5_A 260 RTGKL--FAIENFN--------TVPDVI---TLAKALG-GGIMPIGATIFRKDLD-F-KPGMHSNTFGGNALACAIGSKV 323 (419)
T ss_dssp TTSSS--SGGGGGT--------CCCSEE---EECGGGG-TTTSCCEEEEEEGGGC-C-C------CCCCCHHHHHHHHHH
T ss_pred cCcch--hhHHhcC--------CCCCEE---Eeccccc-CCccceEEEEEchHhh-c-CCcccCCCCCCCHHHHHHHHHH
Confidence 43321 1112211 223333 8999999 69 9999999976544 2 22 2223344688999888888
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
|+.. . +.+++++++++++.+.|+++ +...++. |+|+|+++.... .... ++..++ ++||.++|+.
T Consensus 324 l~~~---~----~~~~~~~~~~~~l~~~L~~~-~~~~~~~-g~~~~i~~~~~~-----~~~~-~~~~l~-~~Gv~v~~~~ 387 (419)
T 2eo5_A 324 IDIV---K----DLLPHVNEIGKIFAEELQGL-ADDVRGI-GLAWGLEYNEKK-----VRDR-IIGESF-KRGLLLLPAG 387 (419)
T ss_dssp HHHH---H----HHHHHHHHHHHHHHHHHTTS-SSEEEEE-TTEEEEECSCHH-----HHHH-HHHHHH-HTTEECEEET
T ss_pred HHHH---H----HHHHHHHHHHHHHHHHHHHh-hhheEee-eEEEEEEEecCc-----cHHH-HHHHHH-HCCCEEecCC
Confidence 8532 2 26777888889999999876 4444444 478888884210 1233 666666 6799999863
Q ss_pred CCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 396 SCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 396 ~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+++||+++. .+++++++++++|++++++.
T Consensus 388 ------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 388 ------RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5689998864 49999999999999998753
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=253.72 Aligned_cols=296 Identities=13% Similarity=0.123 Sum_probs=217.4
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEEc-cCCCcChH-HHHhhhCCCEEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA---EPGEAFLLP-TPYYPGFD-RDLKWRTGVEIVP 162 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~---~~gd~Vl~~-~P~y~~~~-~~~~~~~g~~~~~ 162 (469)
..++++.++++++... ++++++|++|+|+++++..++.++. ++||.|+++ .|+|..+. ..+... |++++.
T Consensus 40 ~~~~~~~l~~~~~~~~----~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-g~~~~~ 114 (385)
T 2bkw_A 40 FQRVLKNTRAVFKSAA----ASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVDV 114 (385)
T ss_dssp HHHHHHHHHHHTTCCG----GGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHhCCCC----CCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHc-CCceEE
Confidence 5678888888886432 2567899999999999999999998 899999887 55666553 455666 999999
Q ss_pred eec-cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccccccccC
Q 043923 163 IQC-TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK--NIHLISDEIYSGTVFS 239 (469)
Q Consensus 163 v~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Deay~~~~~~ 239 (469)
++. + .++.+|++++++++++ .++++|++++|+||||.+++ +++|.++|++| |++||+||+|+ +.
T Consensus 115 v~~~~--~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~---~~ 181 (385)
T 2bkw_A 115 VRPLK--IGESVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCS---IG 181 (385)
T ss_dssp ECCSS--TTSCCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTT---TT
T ss_pred EecCC--CCCCCCHHHHHHHHhc-----CCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccc---cC
Confidence 998 5 3567899999999874 16889999999999999998 45688999999 99999999997 32
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHH----------------------H
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAA----------------------T 296 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~----------------------~ 296 (469)
... .++. ..+.++++.|+||+++ .+| +||++++++.+.+.+ .
T Consensus 182 ~~~-~~~~------------~~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 246 (385)
T 2bkw_A 182 CEE-FEFD------------EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIME 246 (385)
T ss_dssp TSC-CCTT------------TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHH
T ss_pred Ccc-cccc------------ccCceEEEecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHH
Confidence 221 1211 2245678899999764 466 599999665443121 1
Q ss_pred Hhcc-----cccCcHHHHHHHHHHhcCchhhHHH-HHHHHHHHHHHHHHHHHHH-HhcCCceecC-----CceEEEEEec
Q 043923 297 KMSS-----FGLVSSQTQYLLSALLSDKKFTQNY-ISENKKRLKQRHRKLVSGL-EKAGISCLKS-----NAGLFCWVDM 364 (469)
Q Consensus 297 ~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L-~~~g~~v~~~-----~~g~~~~v~~ 364 (469)
.... +++.+...+.++.++++.. .+. +++.+++++++++++.+.| +++|+++..+ ..++++|+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (385)
T 2bkw_A 247 NYEAGKGAYFATPPVQLINSLDVALKEI---LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV 323 (385)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC
T ss_pred hhhccCCCCCCCCCHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEec
Confidence 1111 2345666666666665431 222 5667788889999999999 8878887653 2467889988
Q ss_pred ccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEE-ee----cCCHHHHHHHHHHHHHHHHh
Q 043923 365 RHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC-FA----NMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~-~~----~~~~e~i~~~l~~L~~~l~~ 430 (469)
++ ..++++.|. ++||.+.+|..+.. .++++||+ ++ ..+++++++++++|++++++
T Consensus 324 ~~---------~~~~~~~l~-~~gi~v~~g~~~~~-~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 324 AD---------PPDVIAFLK-SHGVVIAGGIHKDI-GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp SC---------HHHHHHHHH-HTTEECBCCCCTTT-GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CC---------HHHHHHHHH-HCCeEEeCCCCccc-CCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 63 224666664 67999999876532 46799999 76 25899999999999998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=248.91 Aligned_cols=298 Identities=11% Similarity=0.101 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCCCEEEEeecc
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g~~~~~v~~~ 166 (469)
.++.+++.+++.+.++ ++.+.+.+++|+|+++++..++.+++++||.|+++.|.|.+.. ..+... |++++.++.+
T Consensus 51 ~~~~~~~~~~la~~~g--~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v~~~ 127 (376)
T 3f0h_A 51 SSTMLENEKFMLEYAK--APEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIH-EIPYVALKLE 127 (376)
T ss_dssp HHHHHHHHHHHHHHHT--CCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhC--CCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEEeCC
Confidence 4555555555555544 2111244556999999999999999999999999998766543 234455 9999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 167 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
.++.+|++++++++++ ++++|++++|+||||.+++ +++|.++|++||+++|+|++|+.. ... ..+
T Consensus 128 --~~~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~---~~~-~~~ 192 (376)
T 3f0h_A 128 --HGKKLTKEKLYEYDNQ------NFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFL---ADP-FNM 192 (376)
T ss_dssp --TTCCCCHHHHHTTTTS------CCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCH
T ss_pred --CCCCCCHHHHHHhhcc------CceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCcccc---Ccc-ccc
Confidence 3567899999887643 8899999999999999999 667999999999999999999742 221 121
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhc-------------------ccccCcH
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMS-------------------SFGLVSS 306 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~-------------------~~~~~s~ 306 (469)
.. .+..+++.|+||+++ .+| +|+++++++ +.+.+.... ..+..+.
T Consensus 193 ~~------------~~~d~~~~s~~K~l~~~~G--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (376)
T 3f0h_A 193 NE------------CGADVMITGSQKVLACPPG--ISVIVLAPR-GVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAV 257 (376)
T ss_dssp HH------------HTCSEEEEETTTTTCCCSS--CEEEEECHH-HHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCH
T ss_pred cc------------cCccEEEecCcccccCCCc--eEEEEECHH-HHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcH
Confidence 11 145688899999998 555 677888554 433333211 1122333
Q ss_pred HHHHHHHHHhcCchhhHH--HHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHH
Q 043923 307 QTQYLLSALLSDKKFTQN--YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIV 384 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll 384 (469)
....++.+++... .+ .+++.+++++++++++.+.|+++++++.++.....++.-.+.. .+..++.+.++
T Consensus 258 ~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~ 328 (376)
T 3f0h_A 258 GILLQINERLKEI---KKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTT------ANAYDIFLKLK 328 (376)
T ss_dssp HHHHHHHHHHHHH---HHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESS------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCC------CCHHHHHHHHH
Confidence 3333343333211 22 2577788888889999999998887766543322222211211 12335777777
Q ss_pred HhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 385 YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+++||.++||. +...++++|+++.. .+++++++++++|++++++
T Consensus 329 ~~~gi~v~~g~--~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 329 DEYGIWICPNG--GEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHSSEECEECC--GGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HhCCEEEecCc--cccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 66799999984 22346799999975 5999999999999999864
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=256.88 Aligned_cols=325 Identities=15% Similarity=0.122 Sum_probs=220.3
Q ss_pred CCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+. +++ +++.+.+++.+..... ......|+ .....+|++.+++++ + ++
T Consensus 39 g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~---------~~~~~~~~-~~~~~~l~~~la~~~----g------~~ 98 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL---------IHCSNLFW-NRPQMELAELLSKNT----F------GG 98 (397)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC---------SCCCTTSE-EHHHHHHHHHHHHTT----T------SC
T ss_pred CCEEEECCccccccccCCCCHHHHHHHHHHHHhc---------ccCccccC-CHHHHHHHHHHHHhc----C------CC
Confidence 34678998763 555 3455666665531100 00001121 112344555555443 2 58
Q ss_pred cEEEeCChHHHHHHHHHHhcC------C-CCEEEEccCCCcChHH-HHhhhCCCE------------EEEeeccCCCCcc
Q 043923 113 KIVLTAGATSANETLMFCLAE------P-GEAFLLPTPYYPGFDR-DLKWRTGVE------------IVPIQCTSLNGFQ 172 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~------~-gd~Vl~~~P~y~~~~~-~~~~~~g~~------------~~~v~~~~~~~~~ 172 (469)
+|++++|+++|+..++.++.. + ++.|++.+|+|.+... .+... |.+ ++.+|.+
T Consensus 99 ~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~-g~~~~~~~~~p~~~~~~~~~~~------ 171 (397)
T 2ord_A 99 KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT-GQPKYQKPFEPLVPGFEYFEFN------ 171 (397)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS-BCHHHHGGGCSCCTTEEEECTT------
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc-CChhhccccCCCCCCeeEecCC------
Confidence 999999999999999998753 4 4789999999966543 55544 665 6666642
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhh
Q 043923 173 ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251 (469)
Q Consensus 173 ~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~ 251 (469)
|++++++++++ ++++|++++|+||||. +++.+++++|+++|++||+++|+||+|.++.+.+.. .++..+ .
T Consensus 172 -d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~-~ 242 (397)
T 2ord_A 172 -NVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKL-FAYQKY-G 242 (397)
T ss_dssp -CHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SHHHHH-T
T ss_pred -CHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccc-hhhhhh-C
Confidence 78899888764 7999999999999999 999999999999999999999999999875443332 222222 1
Q ss_pred ccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
...+++ ||||+++ +|+|+||++++++.+ .+.. ....+..+++.+.++.++|+.... ++.
T Consensus 243 --------~~~d~~---s~sK~~~-~G~r~G~~~~~~~~~--~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~ 303 (397)
T 2ord_A 243 --------VVPDVL---TTAKGLG-GGVPIGAVIVNERAN--VLEPGDHGTTFGGNPLACRAGVTVIKELTK-----EGF 303 (397)
T ss_dssp --------CCCSEE---EECGGGG-TTSCCEEEEECSTTC--CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS-----TTH
T ss_pred --------CCCCee---eeccccC-CCcCeEEEEEchHhc--ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-----CCH
Confidence 112222 8899999 999999999976643 3321 112234678888888777754221 345
Q ss_pred HHHHHHHHHHHHHHHHhc--CCce---ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCe
Q 043923 330 KKRLKQRHRKLVSGLEKA--GISC---LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~--g~~v---~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~ 404 (469)
+++++++++++.+.|+++ ++++ .++ .|.|+|++++... +..++++.+++ +||.+.||. +++
T Consensus 304 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~~~------~~~ 369 (397)
T 2ord_A 304 LEEVEEKGNYLMKKLQEMKEEYDVVADVRG-MGLMIGIQFREEV------SNREVATKCFE-NKLLVVPAG------NNT 369 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEEEEEECTTS------CHHHHHHHHHH-TTEECEEET------TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceEEEEE-EeEEEEEEECChH------HHHHHHHHHHH-CCCEEccCC------CCE
Confidence 667777778888888765 3432 233 3478888886421 13356666664 799999872 578
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 405 FRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 405 iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+|++++. .+++++++++++|++++++
T Consensus 370 iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 370 IRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 9999764 5999999999999998864
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=254.02 Aligned_cols=323 Identities=15% Similarity=0.140 Sum_probs=221.7
Q ss_pred CCCeeeeeccccccC----hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAENQLS----FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+.++.+ ++.+.+++.+...... .....|+ .....++++.++++++ ++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---------~~~~~~~-~~~~~~l~~~la~~~g----------~~ 94 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVT---------LTSRAFH-SDQLGPWYEKVAKLTN----------KE 94 (392)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS---------CCCTTSE-ETTHHHHHHHHHHHHT----------CS
T ss_pred CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcc---------ccccccC-CHHHHHHHHHHHHhcC----------CC
Confidence 456899998865543 4556666554311100 0011132 2345777777777763 67
Q ss_pred cEEEeCChHHHHHHHHHHhcCC----------CCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCC
Q 043923 113 KIVLTAGATSANETLMFCLAEP----------GEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNG 170 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~----------gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~ 170 (469)
++++++|+++|+..++.++..+ +|.|+++.|+|+++...+....+. .+..++.+
T Consensus 95 ~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 170 (392)
T 3ruy_A 95 MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG---- 170 (392)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT----
T ss_pred EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc----
Confidence 9999999999999999887643 689999999998765544332121 24444432
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHH-HHHHHHHHHhcCeEEEEeccccccccCCCCccchhhh
Q 043923 171 FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNE-LNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEI 249 (469)
Q Consensus 171 ~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~-l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~ 249 (469)
|++++++++++ ++++|++++|+||||.+++.++ +++|.++|++||+++|+||+|+++.+.+... . ...
T Consensus 171 ---d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~ 239 (392)
T 3ruy_A 171 ---DLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-A-CDW 239 (392)
T ss_dssp ---CHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS-G-GGG
T ss_pred ---cHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch-h-hhc
Confidence 78999988863 8999999999999999996555 9999999999999999999998754444321 1 111
Q ss_pred hhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHH
Q 043923 250 LKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYI 326 (469)
Q Consensus 250 ~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~ 326 (469)
.. ...+++ |+||+++ +| +|+||+++++ .+.+.+.... ..++.+++.+.++.++++... .
T Consensus 240 ~~--------~~~d~~---~~SK~l~-gG~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~-- 301 (392)
T 3ruy_A 240 DN--------VTPDMY---ILGKALG-GGVFPISCAAANR-DILGVFEPGSHGSTFGGNPLACAVSIAALEVLE---E-- 301 (392)
T ss_dssp GT--------CCCSEE---EECGGGG-TTTSCCEEEEECH-HHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--
T ss_pred cC--------CCCCEE---EEchhhh-CChhhhEEEEECH-HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--
Confidence 11 112333 7789986 57 9999999954 4433333222 223468888888888876432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC---CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 327 SENKKRLKQRHRKLVSGLEKAG---ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~~g---~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
++.+++++++++++.+.|++++ +....+.+ .|+++.++. . ..+++..++ ++||.+.||. ++
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-~~~~~~~~~--~------~~~l~~~l~-~~gi~v~~~~------~~ 365 (392)
T 3ruy_A 302 EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKG-LFIGIELNE--P------ARPYCEQLK-AAGLLCKETH------EN 365 (392)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEET-TEEEEEESS--C------SHHHHHHHH-TTTEECCCBT------TT
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeee-eEEEEEEcc--h------HHHHHHHHH-HCCcEEecCC------CC
Confidence 5667788888999999998875 33444555 456666764 1 124666665 7799999874 57
Q ss_pred eEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 404 WFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 404 ~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
++|++++. .+++++++++++|++++
T Consensus 366 ~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 366 VIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 89999765 48999999999999886
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=255.64 Aligned_cols=334 Identities=14% Similarity=0.092 Sum_probs=218.7
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCC---------CcHHHHHHHHHHHHhHcCCCCC
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYH---------GLPAFKKALVEFMSEIRGNKVT 108 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---------g~~~Lr~aia~~l~~~~~~~~~ 108 (469)
.+.+.|+.+.+..+++.+.+++.+.. .....|+... ...++++++|++++
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-------- 75 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAM-------------KEAWGNPSSSYVAGRKAKDIINTARASLAKMIG-------- 75 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHH-------------HHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHH-------------HHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 46799999888866676777666531 1122333211 13688999999885
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCCcCh-----------------HHHHhhhCCCEEEEe
Q 043923 109 FDTSKIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGF-----------------DRDLKWRTGVEIVPI 163 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~-----------------~~~~~~~~g~~~~~v 163 (469)
+++++|++|+|+++++..++.+++ ++||+|+++.|+|..+ ...+... |++++.+
T Consensus 76 ~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~-g~~v~~v 154 (432)
T 3a9z_A 76 GKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQ-VAEVTFV 154 (432)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTT-SCEEEEE
T ss_pred CCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhc-CcEEEEE
Confidence 567899999999999999999986 5899999999999876 2223334 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC----------eEEEEeccc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN----------IHLISDEIY 233 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~----------~~iI~Deay 233 (469)
|++.+ ++.+|++++++++++ ++++|++++|+||||.+++.++ |.++|++++ ++||+||+|
T Consensus 155 ~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~---i~~l~~~~~~~~~~~~~~~~~livDea~ 224 (432)
T 3a9z_A 155 PVSKV-NGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMPISE---ISRRIKALNQIRAASGLPRVLVHTDAAQ 224 (432)
T ss_dssp CCCTT-TSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCCHHH---HHHHHHHHHHHHHHHTCCCCEEEEECTT
T ss_pred ecCcc-cCCcCHHHHHHhccC------CceEEEEECcccCcccccCHHH---HHHHHHhcCcccccccCCceEEEEEchh
Confidence 98742 456899999988764 7899999999999999999655 788888999 999999999
Q ss_pred cccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH---------HhcccccC
Q 043923 234 SGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---------KMSSFGLV 304 (469)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~---------~~~~~~~~ 304 (469)
+.. .. ..++... +..+++.|+||++| .|+||+++++......+. .....++.
T Consensus 225 ~~~---~~-~~~~~~~------------~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (432)
T 3a9z_A 225 ALG---KR-RVDVEDL------------GVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTE 285 (432)
T ss_dssp TTT---TS-CCCHHHH------------CCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCC
T ss_pred hhC---Cc-ccChhhc------------CCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCc
Confidence 742 11 1233222 22356889999875 469999997543111111 11122346
Q ss_pred cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee--cC-----CceEEEEEecccccccCChhHH
Q 043923 305 SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL--KS-----NAGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 305 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~--~~-----~~g~~~~v~~~~~~~~~~~~~~ 376 (469)
+.+.+.++.+++... .+++++.+++++++++++.+.|+++ |+++. .+ ..+..+++.++... .+.
T Consensus 286 ~~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 357 (432)
T 3a9z_A 286 NTPMIAGLGKAADLV---SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ-----LRG 357 (432)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT-----CCH
T ss_pred CHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC-----CcH
Confidence 677777666666432 3456788888999999999999885 65543 22 12335555555310 011
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCC------------------CCCeEEEEeecC-CHHHHHHHHHHHHHHHHhhcc
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCT------------------EPGWFRVCFANM-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~------------------~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++...+ .||.+.+|..|... ..+++||+++.. +++++++++++|++++++.++
T Consensus 358 ~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 358 YMVLAQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp HHHHHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHh---cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 1333332 38888887655321 137899999863 899999999999999887654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=260.24 Aligned_cols=337 Identities=12% Similarity=0.050 Sum_probs=211.5
Q ss_pred CCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCC----CCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD----YHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
++.+.|.|+.+.+..+++.+.+++.+....... .....|.. .....++++.+|++++ +++
T Consensus 17 ~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~ 80 (400)
T 3vax_A 17 RGSHMTYLDAAATTRVDQRVADIVLHWMTAEFG--------NAGSRHEYGIRAKRGVERAREYLASTVS--------AEP 80 (400)
T ss_dssp -----CCCCCCCCSSSCHHHHHHHHHHHHHHHS--------CSSCHHHHHHHHHHHHHHHHHHHHHHTT--------CCG
T ss_pred ccCCcEEecCCCCCCCCHHHHHHHHHHHHhccC--------CCcccchhHHHHHHHHHHHHHHHHHHcC--------CCC
Confidence 345678888777776666666666553110000 00001111 1224556666666654 567
Q ss_pred CcEEEeCChHHHHHHHHHHhc----CCCC-EEEEccCCCcChHHHHhhh--CCCEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 112 SKIVLTAGATSANETLMFCLA----EPGE-AFLLPTPYYPGFDRDLKWR--TGVEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~----~~gd-~Vl~~~P~y~~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
++|++|+|+++|+..++.+++ ++|| .|+++.+.|+.+...+... .|++++.+|++. ++.+|++++++++++
T Consensus 81 ~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~ 158 (400)
T 3vax_A 81 DELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRP 158 (400)
T ss_dssp GGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCT
T ss_pred CcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCC
Confidence 899999999999999999997 8999 9999999998876554431 399999999874 567899999988864
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
++++|++++|+||||.+++. ++|.++|++||++||+||+|+. .... .. + . .. ..
T Consensus 159 ------~~~~v~~~~~~nptG~~~~l---~~i~~la~~~~~~li~D~a~~~---~~~~-~~---~-~--------~~-~d 212 (400)
T 3vax_A 159 ------DTLLVSLMHVNNETGVIQPV---AELAQQLRATPTYLHVDAAQGY---GKVP-GD---L-T--------TP-ID 212 (400)
T ss_dssp ------TEEEEECCSBCTTTCBBCCH---HHHHHHHTTSSCEEEEECTTTT---TTSG-GG---G-G--------SC-CS
T ss_pred ------CceEEEEECCCCCceeeCcH---HHHHHHHHhcCCEEEEEhhhhc---CCCC-cC---h-h--------hc-Cc
Confidence 78999999999999999994 5688899999999999999973 2111 11 1 1 11 45
Q ss_pred EEEccCccccCCCcceEEEEE-ecCH-------HHHHHHH-----HhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIY-SNDD-------MVVAAAT-----KMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKK 331 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li-~~~~-------~~~~~~~-----~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 331 (469)
+++.|+||.+|.+| +|+++ ++++ .+..... .....++.+...+.++.+++.. ..+++++.++
T Consensus 213 ~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~ 287 (400)
T 3vax_A 213 MISISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQWQV 287 (400)
T ss_dssp EEEEETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHHHHH
T ss_pred EEEEeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHHHHH
Confidence 78899999887555 56666 6552 1111110 0111233556666666555542 1345678888
Q ss_pred HHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--------
Q 043923 332 RLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-------- 400 (469)
Q Consensus 332 ~l~~~~~~l~~~L~~~g~~v~~~~~---g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-------- 400 (469)
+++++++++.+.|+..|+++..+.+ +.++++.++.. +..++.+.|. +||.+++|..|...
T Consensus 288 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~ 358 (400)
T 3vax_A 288 AAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDV-------DAEAFLVTLK--DLVAVATGSASTSASFTPSHVL 358 (400)
T ss_dssp HHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHH--HHHHHTTTTEEEEEEECCHHHH
T ss_pred HHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHh--cCcEEEecccccCCCCCccHHH
Confidence 8999999999999833788776654 34667777631 1234566655 69999998765431
Q ss_pred -----C----CCeEEEEe-ec-CCHHHHHHHHHHHHHHHHh
Q 043923 401 -----E----PGWFRVCF-AN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 401 -----~----~~~iRi~~-~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
. ++++||++ +. .+++++++++++|++++++
T Consensus 359 ~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 359 RAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred HHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 48999999 65 4889999999999998764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-29 Score=249.43 Aligned_cols=332 Identities=16% Similarity=0.128 Sum_probs=221.8
Q ss_pred CCCeeeeeccc--cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+. +++. ++.+.+++.+..... ......|+. ....++++.+++++ + .+
T Consensus 38 g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~---------~~~~~~~~~-~~~~~l~~~la~~~----~------~~ 97 (406)
T 4adb_A 38 GKEYIDFAGGIAVNALGHAHPELREALNEQASKF---------WHTGNGYTN-EPVLRLAKKLIDAT----F------AD 97 (406)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC---------SCCCTTSCC-HHHHHHHHHHHHHS----S------CS
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhc---------ccccCCcCC-HHHHHHHHHHHhhC----C------CC
Confidence 44689999873 4442 455666655421100 001112322 22345555555543 2 56
Q ss_pred cEEEeCChHHHHHHHHHHhcC-------CC-CEEEEccCCCcChHHHHhhhCC------------CEEEEeeccCCCCcc
Q 043923 113 KIVLTAGATSANETLMFCLAE-------PG-EAFLLPTPYYPGFDRDLKWRTG------------VEIVPIQCTSLNGFQ 172 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~-------~g-d~Vl~~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~ 172 (469)
+|++|+|+++|+..++.++.. +| |.|++++|+|+.+...+....+ ..+..+|.
T Consensus 98 ~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 170 (406)
T 4adb_A 98 RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY------- 170 (406)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------
T ss_pred eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------
Confidence 999999999999999998864 55 9999999999988655544412 24444443
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC--CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhh
Q 043923 173 ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM--SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250 (469)
Q Consensus 173 ~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~--s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~ 250 (469)
.|++++++++++ ++++|+++ |+||||.++ +.+++++|+++|++||++||+||+|+++.+.+... .. ...
T Consensus 171 ~d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~ 241 (406)
T 4adb_A 171 NDINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AY-MHY 241 (406)
T ss_dssp TCHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HH-HHH
T ss_pred CcHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HH-Hhc
Confidence 378888887753 78888888 999999988 99999999999999999999999998754444321 11 121
Q ss_pred hccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHH
Q 043923 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISE 328 (469)
Q Consensus 251 ~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 328 (469)
. ...+++ ||||+++ +|+|+||++++++ +.+.+.... ..+..+++.+.++.++++.... ++
T Consensus 242 ~--------~~~d~~---t~sK~~~-~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~ 303 (406)
T 4adb_A 242 G--------VTPDLL---TTAKALG-GGFPVGALLATEE-CARVMTVGTHGTTYGGNPLASAVAGKVLELINT-----PE 303 (406)
T ss_dssp T--------CCCSEE---EECGGGG-TTSCCEEEEECHH-HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-----HH
T ss_pred C--------CCCCEE---Eechhhc-CCCCeEEEEEcHH-HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-----cC
Confidence 1 223333 6799999 9999999999544 444333322 2234678888888877754321 34
Q ss_pred HHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCe
Q 043923 329 NKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404 (469)
Q Consensus 329 ~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~ 404 (469)
.+++++++++++.+.|++++ .....+..|+++|+.++.... .+..+++..++ ++||.+.|+. +++
T Consensus 304 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~v~~~~------~~~ 372 (406)
T 4adb_A 304 MLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA----GQAKQISQEAA-KAGVMVLIAG------GNV 372 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT----TCHHHHHHHHH-HTTEECEESS------TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH----HHHHHHHHHHH-HCCcEEeecC------CCe
Confidence 55666667777777776642 111122245788898875321 12345667766 4599999864 678
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 405 FRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 405 iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+|++++. .+++++++++++|++++++.++
T Consensus 373 iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 373 VRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9997655 4999999999999999987765
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=254.12 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=217.3
Q ss_pred CCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+. +++ +++.+.+++.+..... ......|+ .....++++.++++++ ++++
T Consensus 44 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~---------~~~~~~~~-~~~~~~l~~~la~~~~--------~~~~ 105 (395)
T 1vef_A 44 GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL---------MAMPQTLP-TPMRGEFYRTLTAILP--------PELN 105 (395)
T ss_dssp SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC---------CCCCTTSC-CHHHHHHHHHHHHTSC--------TTEE
T ss_pred CCEEEEccCccccccCCCCCHHHHHHHHHHHHhC---------CCCccccC-CHHHHHHHHHHHHhcC--------CCcC
Confidence 34578998876 444 4456666665531100 00011232 2234566666666542 4678
Q ss_pred cEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChH-HHHhhhCCCE------------EEEeeccCCCCcccCHHH
Q 043923 113 KIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFD-RDLKWRTGVE------------IVPIQCTSLNGFQITETA 177 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~-~~~~~~~g~~------------~~~v~~~~~~~~~~d~~~ 177 (469)
+|++++|+++|+..++.++. .+||.|++.+|+|+... ..+... |.+ +..++. .|+++
T Consensus 106 ~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~-g~~~~~~~~~p~~~~~~~~~~-------~d~~~ 177 (395)
T 1vef_A 106 RVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVT-WEPKYREPFLPLVEPVEFIPY-------NDVEA 177 (395)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTC-CCHHHHGGGCSCSSCEEEECT-------TCHHH
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhc-CCcccccccCCCCCCeeEeCC-------CcHHH
Confidence 99999999999999998764 57889999999987643 344444 664 233331 37899
Q ss_pred HHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccc
Q 043923 178 IEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 256 (469)
Q Consensus 178 l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~ 256 (469)
+++++++ ++++|+++.++||||.++ +.+++++|.++|++||++||+||+|+++.+.+.. .+ .+...
T Consensus 178 l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~-~~-~~~~~----- 244 (395)
T 1vef_A 178 LKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR-FA-FEHFG----- 244 (395)
T ss_dssp HHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-ST-HHHHT-----
T ss_pred HHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCch-hH-hhhcC-----
Confidence 9888763 788776655578999865 6888999999999999999999999964332321 11 12211
Q ss_pred cCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Q 043923 257 NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLK 334 (469)
Q Consensus 257 ~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~ 334 (469)
...+++ ||||+++ +|+|+||++++++ +.+.+.. ....+..+.+.+.++.++++... + ....++++
T Consensus 245 ---~~~d~~---s~sK~~~-~g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~---~--~~~~~~~~ 311 (395)
T 1vef_A 245 ---IVPDIL---TLAKALG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE---R--TRLWERAA 311 (395)
T ss_dssp ---CCCSEE---EECGGGG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--HTTHHHHH
T ss_pred ---CCCCEE---EEccccc-CCCceEEEEehHH-HHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH---h--CCHHHHHH
Confidence 112333 8899999 5999999999655 4443332 11223367778877777765321 1 34566777
Q ss_pred HHHHHHHHHHHhcCCcee--cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-
Q 043923 335 QRHRKLVSGLEKAGISCL--KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 411 (469)
Q Consensus 335 ~~~~~l~~~L~~~g~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~- 411 (469)
++++++.+.|++++.++. .+..|+|+|++++.. ..++++.+++++||.+.|+ +++++||+++.
T Consensus 312 ~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~ 377 (395)
T 1vef_A 312 ELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--------AAPYIARLEKEHRVLALQA------GPTVIRFLPPLV 377 (395)
T ss_dssp HHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--------SHHHHHHHHHHHCEECEES------STTEEEECCCTT
T ss_pred HHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--------HHHHHHHHHHHCCeEEecC------CCCEEEEeCCCC
Confidence 888889999988754321 223457889988741 1246677763669999986 25789999864
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043923 412 MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 412 ~~~e~i~~~l~~L~~~l 428 (469)
.+++++++++++|++++
T Consensus 378 ~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 378 IEKEDLERVVEAVRAVL 394 (395)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 58999999999999876
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=249.60 Aligned_cols=328 Identities=14% Similarity=0.080 Sum_probs=216.9
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
..+.+..++|+++ ++.+.+++.+. .....|++..+..+|++.++++++ . +..+++
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~--------------~~~~~~~~~~~~~~l~~~la~~~~--------~--~~~i~~ 69 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDN--------------LESDIYGNGAVIEDFETKIAKILG--------K--QSAVFF 69 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTT--------------CBCCBTTBSHHHHHHHHHHHHHHT--------C--SEEEEE
T ss_pred chhhcCCCccccCCCHHHHHHHHhh--------------cccCcccCCHHHHHHHHHHHHHhC--------C--CcEEEe
Confidence 4466777888885 35455554442 122356666678999999999985 2 223555
Q ss_pred CChHHHHHHHHHHhcCCCCE--EEEccCCCcChHH---HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 118 AGATSANETLMFCLAEPGEA--FLLPTPYYPGFDR---DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~--Vl~~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|+++++..++.+++.+||. |+++.+.|..+.. ..... |++++.++.+ ++.+|+++++++ . +++
T Consensus 70 ~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~-~------~~~ 138 (359)
T 3pj0_A 70 PSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQ-QITPLLLGTA---NQLLTIDDIKSL-R------EPV 138 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHH-CCEEEECSCT---TSCCCHHHHHTC-S------SCC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhc-CceEEecCCc---CCCcCHHHHHhc-c------CCc
Confidence 88889999999999888886 5555555432221 12345 9999998863 457899998876 2 388
Q ss_pred eEEEEecCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 193 KGVLVTNPSNPL-GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 193 ~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
++|+++||+||+ |.+++.+++++|+++|++||++||+|++|........ ..+...+.. ...+++.|+|
T Consensus 139 ~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~----------~~d~~~~s~s 207 (359)
T 3pj0_A 139 SSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFY-QKSAEEICA----------LFDSVYVSFY 207 (359)
T ss_dssp SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHH-TCCHHHHHT----------TCSEEEEESS
T ss_pred eEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhh-CCCHHHhhc----------cCCEEEEecc
Confidence 999999999998 7999999999999999999999999999864221110 012333322 2234456999
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHhc-cc---ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
|+++.+ .+ ||++++ +.+.+.+.... .+ .......+.++...+. +.. +..+++.++++++.+.|+++
T Consensus 208 K~~~~~-~g-g~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~------~~~-~~~~~~~~~~~~l~~~L~~~ 277 (359)
T 3pj0_A 208 KGIGGI-AG-AILAGN-DDFVQEAKIWKRRYGGDLISLYPYILSADYYFE------KRI-GKMAEYFEAAKGLAERFNSC 277 (359)
T ss_dssp STTCCS-SC-EEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH------HHG-GGHHHHHHHHHHHHHHHHTS
T ss_pred ccCCCc-ce-EEEECC-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH------HHH-HHhHHHHHHHHHHHHHHhhC
Confidence 999755 33 777775 44544444322 11 1112222222222332 222 23344667788899999988
Q ss_pred -CCcee-cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec----CCHHHHHHHH
Q 043923 348 -GISCL-KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN----MSEDTLKLSM 421 (469)
Q Consensus 348 -g~~v~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~----~~~e~i~~~l 421 (469)
|+++. .+..++|+|+.++.... .+..++.+.+ .++||.++||..|+..+.+++|++++. .+.+++++++
T Consensus 278 ~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l 352 (359)
T 3pj0_A 278 SGVKTVPEVPVSNMFHVYFENSAD----EIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVF 352 (359)
T ss_dssp TTEEEESSSCSSSEEEEEESSCHH----HHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHH
T ss_pred CCceeeccCCcceEEEEEecCccc----hhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHH
Confidence 88875 45666788888763210 1223444554 567999999988776556799999863 3789999999
Q ss_pred HHHHHH
Q 043923 422 QRLKAF 427 (469)
Q Consensus 422 ~~L~~~ 427 (469)
++|.+.
T Consensus 353 ~~l~~~ 358 (359)
T 3pj0_A 353 RCLEKE 358 (359)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=246.09 Aligned_cols=324 Identities=10% Similarity=0.082 Sum_probs=214.3
Q ss_pred eeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHH
Q 043923 43 MGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS 122 (469)
Q Consensus 43 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~ 122 (469)
|+.+.++...+.+.+++...... .....|++..+..+|++++|++++ . +..++++|+++
T Consensus 15 l~~~~~p~~~~~~~~~~~~~~~~-----------~~~~~y~~~~~~~~l~~~la~~~~--------~--~~~i~~~~G~~ 73 (357)
T 3lws_A 15 QISGHGKRNVGVLKTAFAAVADE-----------MASDQYGTGAIIEPFEQKFADVLG--------M--DDAVFFPSGTM 73 (357)
T ss_dssp ESSBSSCCBHHHHHHHHTTSCTT-----------CBCEETTEETTHHHHHHHHHHHHT--------C--SEEEEESCHHH
T ss_pred cccCCCCCCHHHHHHHHHHhhcc-----------cCcccccCChHHHHHHHHHHHHhC--------C--CcEEEecCcHH
Confidence 45555555556666665542100 123457776788999999999986 2 33455577788
Q ss_pred HHHHHHHHhcCCCC--EEEEccCCCcChHH---HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 123 ANETLMFCLAEPGE--AFLLPTPYYPGFDR---DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 123 al~~~~~~l~~~gd--~Vl~~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
++..++.+++.+|| .|+++.++|..+.. ..... |++++.++.+ ++.+|+++++++ +++++|++
T Consensus 74 a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~--------~~~~~v~~ 141 (357)
T 3lws_A 74 AQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELH-PIETILVGAA---DRLMTLDEIKAL--------PDIACLLL 141 (357)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHS-SCEEEECSCT---TSCCCHHHHHTC--------CSCSEEEE
T ss_pred HHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhcc-CcEEEEecCC---CCCcCHHHHhcC--------cCcceEEE
Confidence 99999999988888 67777666543322 23444 9999988842 346899998875 14889999
Q ss_pred ecCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEecccccc--ccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 198 TNPSNPL-GTTMSRNELNLLVNIITEKNIHLISDEIYSGT--VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 198 ~~P~NPt-G~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++|+||| |.+++.+++++|+++|++||++||+||+|... .+.+. +...+.. ..+ +++.|+||+|
T Consensus 142 ~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~--------~~d--~~~~s~sK~~ 208 (357)
T 3lws_A 142 ELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEK---TAAEIAG--------LFD--SIYISFYKGL 208 (357)
T ss_dssp ESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC---CHHHHHT--------TSS--EEEEESSSTT
T ss_pred EcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCC---ChHHHHh--------cCC--EEEEeccccC
Confidence 9999998 99999999999999999999999999998621 11122 2333322 123 3478999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcc-cc---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSS-FG---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GI 349 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~-~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~ 349 (469)
+.++. ||+++++. +.+.+..... +. ....+.+.++...+.+ +.+. .+++.++++++.+.|+++ |+
T Consensus 209 ~~~~g--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~-~~~~~~~~~~l~~~L~~~~g~ 278 (357)
T 3lws_A 209 GGIAG--AILAGPAA-FCQTARIWKRRYGGDLISLYPYIVSADYYYEL------RKDR-MGQYYEQAKQLAEQFNALPGV 278 (357)
T ss_dssp CCSSC--EEEEECHH-HHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH------HTTC-HHHHHHHHHHHHHHHHTSTTE
T ss_pred CCCce--EEEEcCHH-HHHHHHHHHHHhcCCcccchHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHhCCCC
Confidence 42332 99998554 4444433221 11 1223333333333322 2222 233566778899999988 88
Q ss_pred cee-cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec----CCHHHHHHHHHHH
Q 043923 350 SCL-KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN----MSEDTLKLSMQRL 424 (469)
Q Consensus 350 ~v~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~----~~~e~i~~~l~~L 424 (469)
++. .+.+++|+|++++.... .+..++.+. +.++||.++||..|. .+.+++|++++. .+++++++++++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-l~~~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l 352 (357)
T 3lws_A 279 HTTPEVPVSNMFHLHFDGQAA----DISPKLEQV-QEETGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARL 352 (357)
T ss_dssp EEESSSCSSSEEEEEEESCHH----HHHHHHHHH-HHHHCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHH
T ss_pred eeccCCCcceEEEEEecCChH----HHHHHHHHH-HHhcCeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHH
Confidence 873 46667899999874210 112344444 456799999997665 344589999863 3789999999999
Q ss_pred HHHH
Q 043923 425 KAFV 428 (469)
Q Consensus 425 ~~~l 428 (469)
.+++
T Consensus 353 ~~al 356 (357)
T 3lws_A 353 RQAF 356 (357)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8765
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=249.57 Aligned_cols=351 Identities=12% Similarity=0.054 Sum_probs=218.8
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||++.+ .+++. ++.+.+++.+... ... +....+..+++.++++++.+.++ ...
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-------------~~~-~~~~~~~~~~~~~la~~l~~~~~----~~~ 108 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQ-------------TLS-YFPMSQSHEPAIKLAEKLNEWLG----GEY 108 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHT-------------TCC-CCCTTSEEHHHHHHHHHHHHHHT----SCE
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-------------hcC-CcccccCCHHHHHHHHHHHHhCC----CCc
Confidence 34568999987 45553 4666666655311 111 11122445666666666665544 344
Q ss_pred CcEEEeCChHHHHHHHHHHhc-----C---CCCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCCc
Q 043923 112 SKIVLTAGATSANETLMFCLA-----E---PGEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNGF 171 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~-----~---~gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~ 171 (469)
+ |++|+|+++|+..+++.+. . +++.|++.+|+|+++........|. .+..++......+
T Consensus 109 ~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (452)
T 3n5m_A 109 V-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRM 187 (452)
T ss_dssp E-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTS
T ss_pred e-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccC
Confidence 5 9999999999999999987 5 7899999999998876444332121 2333332110111
Q ss_pred cc-C---------HHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 172 QI-T---------ETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 172 ~~-d---------~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
.. | +++|++++++. ...++++|+++.+ +| ||.++ +.+.+++|.++|++||+++|+||+|.++...
T Consensus 188 ~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~ 264 (452)
T 3n5m_A 188 PGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT 264 (452)
T ss_dssp TTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc
Confidence 11 1 78898888721 1126777777766 79 99766 8888999999999999999999999985433
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH---h-----cccccCcHHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK---M-----SSFGLVSSQTQY 310 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~---~-----~~~~~~s~~~q~ 310 (469)
+..+ . .+... .... +.||||+++ .| +|+||++++ +.+.+.+.. . ...+..+++++.
T Consensus 265 g~~~-~-~~~~~--------~~~d---i~t~sK~l~-~G~~~ig~~~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~a 329 (452)
T 3n5m_A 265 GKAF-G-FMNYD--------VKPD---IITMAKGIT-SAYLPLSATAVK-REIYEAFKGKGEYEFFRHINTFGGNPAACA 329 (452)
T ss_dssp SSSS-G-GGGTT--------CCCS---EEEECGGGG-TTSSCCEEEEEE-HHHHGGGCSSSTTCSCCCCCSSTTCHHHHH
T ss_pred cccc-h-hhhcC--------CCCC---EEeeccccc-CCCcceEEEEEC-HHHHHHHhhccCCCCccccCCCCCCHHHHH
Confidence 3321 1 11111 1122 337999998 59 999999995 445444422 1 122346788888
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH----hcC-CceecCCceEEEEEecccccccCC---hhHHHHHHHH
Q 043923 311 LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLE----KAG-ISCLKSNAGLFCWVDMRHLLRSNT---FEAEMELWKK 382 (469)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~----~~g-~~v~~~~~g~~~~v~~~~~~~~~~---~~~~~~l~~~ 382 (469)
++.++|+.... +...++++++.+++.+.|+ +++ +....+.+ .|+++.+........ .....+++..
T Consensus 330 aa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 403 (452)
T 3n5m_A 330 LALKNLEIIEN-----ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKG-LLVGIELVNDKETKEPIDNDKIASVVNA 403 (452)
T ss_dssp HHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESS-SCEEEEEEEETTTTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCCcccCCCCHHHHHHHHHH
Confidence 88887763221 1223333334444444444 333 33344444 677777643211110 0112345566
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
++ ++||.+.|+..|....++++||+++. .+++++++++++|++++++
T Consensus 404 l~-~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 404 CK-EKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp HH-HTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HH-HCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 55 56999999988766567899998765 4999999999999999864
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=243.54 Aligned_cols=281 Identities=16% Similarity=0.161 Sum_probs=197.2
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIV 161 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~ 161 (469)
....+|++.++++++ .+ ++++++++++|+..++.+++++||.|+++.|+|.++...+ ... |++++
T Consensus 64 ~~~~~l~~~la~~~g--------~~--~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~ 132 (398)
T 2rfv_A 64 PTTDALEKKLAVLER--------GE--AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVR 132 (398)
T ss_dssp HHHHHHHHHHHHHHT--------CS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHT-TCEEE
T ss_pred hHHHHHHHHHHHHhC--------CC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHc-CCEEE
Confidence 356778888888774 22 5555566669999999999999999999999999887766 555 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.++.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|++||+++|+||+|+...+..
T Consensus 133 ~v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 195 (398)
T 2rfv_A 133 FVDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ- 195 (398)
T ss_dssp EECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EeCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 99864 78889888764 7899999999999999998 6678999999999999999998654321
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhc-cc--ccCcHHHHHHHHHHhc
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMS-SF--GLVSSQTQYLLSALLS 317 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~-~~--~~~s~~~q~~~~~~l~ 317 (469)
...+ +.++++.|+||+++.+|+|+ ||++++++.+.+.+.... .+ +..+++.+.++.+.++
T Consensus 196 ----~~~~------------~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (398)
T 2rfv_A 196 ----PLQL------------GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVK 259 (398)
T ss_dssp ----GGGG------------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred ----chhh------------CCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhh
Confidence 1111 46788999999998899998 999997655543343322 22 3467788888888886
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcC---------------CceecC---CceEEEEEecccccccCChhHHHHH
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAG---------------ISCLKS---NAGLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g---------------~~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
.. . ...+.+.++.+.+.+.|++++ +++..+ ..|.++++++++. . +.
T Consensus 260 ~~---~----~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~------~---~~ 323 (398)
T 2rfv_A 260 TL---G----IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG------L---EA 323 (398)
T ss_dssp TH---H----HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH------H---HH
T ss_pred hH---H----HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC------H---HH
Confidence 52 2 223334455566666776542 222222 1345666687631 0 11
Q ss_pred HHHHHHh---CCeEEeCCCCCC---------------------CCCCCeEEEEeecC-CHHHHHHHHHHHHH
Q 043923 380 WKKIVYD---VKLNISPGSSCH---------------------CTEPGWFRVCFANM-SEDTLKLSMQRLKA 426 (469)
Q Consensus 380 ~~~ll~~---~GI~v~pg~~f~---------------------~~~~~~iRi~~~~~-~~e~i~~~l~~L~~ 426 (469)
...++++ .||.+.+|..|. ...++++||+++.. ++++++.+.++|++
T Consensus 324 ~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 324 GRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 2333433 388888886642 01267999999863 56666666666654
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=248.41 Aligned_cols=327 Identities=13% Similarity=0.181 Sum_probs=228.3
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
.++|||+.++++++ +.+.+++.+. +. ...|++..+..+|++++|++++ . ++++++
T Consensus 30 ~~~id~~~~~~~~~-~~v~~a~~~~-------------~~-~~~y~~~~~~~~l~~~la~~~~--------~--~~~v~~ 84 (399)
T 2oga_A 30 VPFLDLKAAYEELR-AETDAAIARV-------------LD-SGRYLLGPELEGFEAEFAAYCE--------T--DHAVGV 84 (399)
T ss_dssp BCSCCHHHHHHHTH-HHHHHHHHHH-------------HH-HTCCSSSHHHHHHHHHHHHHTT--------S--SEEEEE
T ss_pred CcccccCcCCCCCC-HHHHHHHHHH-------------Hh-cCCCCCchhHHHHHHHHHHHHC--------C--CeEEEe
Confidence 36899999998876 4555555542 11 1256666778999999999985 2 267777
Q ss_pred CChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 118 AGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 118 ~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+|+++|+..++.++ +++||.|+++.|+|..+...+... |++++.+++++ +++.+|++++++++++ ++++|+
T Consensus 85 ~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~ 156 (399)
T 2oga_A 85 NSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSAT-GATPVPVEPHE-DHPTLDPLLVEKAITP------RTRALL 156 (399)
T ss_dssp SCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCS-SSSSBCHHHHHHHCCT------TEEEEC
T ss_pred cCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHC-CCEEEEEecCC-CCCCcCHHHHHHhcCC------CCeEEE
Confidence 88899999999999 899999999999999999888877 99999999874 3577999999988864 677666
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCccchhhhhhccccccCCcCCeEEEEccC--ccc
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL--SKD 273 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~--SK~ 273 (469)
|+||||.+.+ +++|.++|+++|+++|+||+|+.+. +++. . + . .. ..+++.|+ ||.
T Consensus 157 ---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~---~-~--------~~-~di~~~S~~~sK~ 214 (399)
T 2oga_A 157 ---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGR---R---I-G--------AG-SSVAAFSFYPGKN 214 (399)
T ss_dssp ---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTE---E---T-T--------CT-TCEEEEECCTTSS
T ss_pred ---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCe---e---c-c--------cc-cCEEEEeCCCCcc
Confidence 5789999987 5668889999999999999998542 2211 1 1 0 11 24777888 799
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhccc--------------ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHH
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSSF--------------GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRK 339 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 339 (469)
+|.+| |+||++++++.+.+.+...... +.++.+.+.++.+.+... +...++.++..++
T Consensus 215 ~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~~~~ 286 (399)
T 2oga_A 215 LGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL-------DSWNGRRSALAAE 286 (399)
T ss_dssp SCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH-------HHHHHHHHHHHHH
T ss_pred CCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 99779 9999999756665544433221 124566666665555432 2333444555677
Q ss_pred HHHHHHhc-CCcee-cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-----------CC------
Q 043923 340 LVSGLEKA-GISCL-KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-----------CT------ 400 (469)
Q Consensus 340 l~~~L~~~-g~~v~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-----------~~------ 400 (469)
+.+.|+++ |+++. .+..+.++|+.++-.. .+..++.+.|. ++||.++++.... ..
T Consensus 287 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~ 360 (399)
T 2oga_A 287 YLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT-----ERRDELRSHLD-ARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPR 360 (399)
T ss_dssp HHHHTTTCTTCBCCCCCTTEECCCSSEEEEC-----SSHHHHHHHHH-HTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHH
T ss_pred HHHHhccCCCccccCCCCCCcceeEEEEEEC-----CCHHHHHHHHH-HCCCceecCCCCccccchhhcccCCCCCCChh
Confidence 88888876 66654 2445566653332111 01234556654 6799998753210 00
Q ss_pred ----CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 401 ----EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 401 ----~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..+++||++.. .+++++++++++|++++++.++
T Consensus 361 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 361 AESFARQVLSLPIGPHLERPQALRVIDAVREWAERVDQ 398 (399)
T ss_dssp HHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 02579999975 4999999999999999886543
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=250.37 Aligned_cols=350 Identities=15% Similarity=0.089 Sum_probs=218.7
Q ss_pred CCCCeeeeecccc--cc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLAEN--QL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||++.+.+ ++ .++.+.+++.+. +.....|+...+..++++++++++.+.++ ...
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~~ 103 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAA-------------AANPAGATILSASNAPAVTLAERLLASFP----GEG 103 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHH-------------HHSCSCSCSSSSEEHHHHHHHHHHHHTTT----CTT
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHH-------------HHhccCccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 3456899998866 33 345666666542 12223454445667888888888877653 234
Q ss_pred -CcEEEeCChHHHHHHHHHHh--cCCCCEEEEccCCCcChHHHHhhhCCCEE--------------EEeeccCCCCccc-
Q 043923 112 -SKIVLTAGATSANETLMFCL--AEPGEAFLLPTPYYPGFDRDLKWRTGVEI--------------VPIQCTSLNGFQI- 173 (469)
Q Consensus 112 -~~i~~t~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~--------------~~v~~~~~~~~~~- 173 (469)
++|++++|+++|+..++.++ ..+++.|++.+|.|+++...+....|... ..+|.+. .+..
T Consensus 104 ~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 181 (439)
T 3dxv_A 104 THKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP--YRNDP 181 (439)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC--BTTBT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc--ccccc
Confidence 79999999999999999885 23567888889988766544433313322 2233221 1111
Q ss_pred ----CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 174 ----TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMS-RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 174 ----d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s-~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
|+++|++++++ ....++++|+++.++|++|.+.+ .+.+++|.++|++||+++|+||+|.++...+.. ...+
T Consensus 182 ~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~--~~~~ 257 (439)
T 3dxv_A 182 TGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRL--HCFE 257 (439)
T ss_dssp TSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSS--SGGG
T ss_pred cHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh--hHHH
Confidence 68888888841 11226777777777788888665 555999999999999999999999874333321 1112
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHHHH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQNYI 326 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 326 (469)
... ...+++ ||||++| +|+|+||+++++ .+.+.+... ...+ .+++++.++.++++....
T Consensus 258 ~~~--------~~~di~---s~sK~~~-~G~riG~~~~~~-~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~----- 318 (439)
T 3dxv_A 258 HEG--------FVPDIL---VLGKGLG-GGLPLSAVIAPA-EILDCASAFAMQTLH-GNPISAAAGLAVLETIDR----- 318 (439)
T ss_dssp GTT--------CCCSEE---EECGGGG-TTSCCEEEEEEH-HHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-----
T ss_pred hcC--------CCCCEE---EEcchhc-CCcceEEEEECH-HHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-----
Confidence 211 112333 9999999 799999999954 444433322 2234 677888887777753221
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcC-CceecCCceEEEEEeccccccc--CChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 327 SENKKRLKQRHRKLVSGLE----KAG-ISCLKSNAGLFCWVDMRHLLRS--NTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~----~~g-~~v~~~~~g~~~~v~~~~~~~~--~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
+...++++++++++.+.|. +++ +...++. |.|+|+.+...... .......+++..+++ +||.+.|+..+
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~-- 394 (439)
T 3dxv_A 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR-GLACGMELVCDRQSREPARAETAKLIYRAYQ-LGLVVYYVGMN-- 394 (439)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEECHHHHHHHHHHHHH-HTEECEEESTT--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCCHHHHHHHHHHHHH-CCcEEeecCCC--
Confidence 1223333334444444443 333 2333444 56788877321100 011234456677765 49999998532
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 400 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 400 ~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+++||+++. .+++++++++++|++++++..+
T Consensus 395 --~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 395 --GNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp --SCEEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4789998765 4999999999999999987755
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=245.23 Aligned_cols=332 Identities=14% Similarity=0.085 Sum_probs=216.2
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+ .++++ ++.+.+++.+... ... |....+..++++++++++.+.++ ++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-------------~~~-~~~~~~~~~~~~~l~~~la~~~~------~~ 94 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD-------------KLL-HTSNLYYNENIAAAAKNLAKASA------LE 94 (395)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHT-------------TCS-CCCTTSBCHHHHHHHHHHHHHHT------CS
T ss_pred CCEEEECCCcHHhccCCCCCHHHHHHHHHHHH-------------hcc-ccccccCCHHHHHHHHHHHHhcC------CC
Confidence 4568999988 66664 4666666655311 111 11111234555666666655433 68
Q ss_pred cEEEeCChHHHHHHHHHHhc-------CCCCEEEEccCCCcChHHHHhhhC------------CCEEEEeeccCCCCccc
Q 043923 113 KIVLTAGATSANETLMFCLA-------EPGEAFLLPTPYYPGFDRDLKWRT------------GVEIVPIQCTSLNGFQI 173 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~-------~~gd~Vl~~~P~y~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~ 173 (469)
+|++++|+++|+..++.++. .++|.|++.+|+|+++...+.... +.++..++.+
T Consensus 95 ~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 167 (395)
T 3nx3_A 95 RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN------- 167 (395)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-------
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-------
Confidence 99999999999999998875 457999999999987754433221 2345555432
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhc
Q 043923 174 TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 252 (469)
Q Consensus 174 d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~ 252 (469)
|++++++++++ ++++|++..++|++|.. ++.+++++|.++|++||+++|+||+|.++...+.. ... ...
T Consensus 168 d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~-~~~-~~~-- 237 (395)
T 3nx3_A 168 DISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKF-FAY-EHA-- 237 (395)
T ss_dssp CHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGG-GGG--
T ss_pred CHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcc-hhH-Hhc--
Confidence 68889888753 77887777777777765 78888999999999999999999999875333321 111 111
Q ss_pred cccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHH
Q 043923 253 RNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENK 330 (469)
Q Consensus 253 ~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 330 (469)
+....+.|+||++| +|+|+||++++++.+.+.+.... ..+..+++++.++.++|+.... .++.++.+
T Consensus 238 ---------~~~~d~~t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~ 306 (395)
T 3nx3_A 238 ---------QILPDIMTSAKALG-CGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVN 306 (395)
T ss_dssp ---------TCCCSEEEECGGGT-TTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred ---------CCCCCEEEeccccc-CCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 11122347999998 69999999996554244443321 2234688888888877763211 12233333
Q ss_pred HHHHHHHHHHHHHHHhcC-CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe
Q 043923 331 KRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 409 (469)
Q Consensus 331 ~~l~~~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~ 409 (469)
+..+..++.+.+.+.++. +...++. |+|+|+.++... +..+++..++ ++||.+.|+. ++++|+++
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~------~~~~~~~~l~-~~Gi~v~~~~------~~~iRi~~ 372 (395)
T 3nx3_A 307 KLTPYLEQSLDELINEFDFCKKRKGL-GFMQGLSLDKSV------KVAKVIQKCQ-ENALLLISCG------ENDLRFLP 372 (395)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEECTTS------CHHHHHHHHH-HTTEECEEET------TTEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeE-EEEEEEEeCCcc------hHHHHHHHHH-HCCCEEecCC------CCEEEEEC
Confidence 333444444555444443 2333333 478888887521 2235666665 5699999873 57899997
Q ss_pred ec-CCHHHHHHHHHHHHHHHHh
Q 043923 410 AN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 410 ~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+. .+++++++++++|++++++
T Consensus 373 ~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 373 PLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 66 4999999999999999864
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=241.42 Aligned_cols=347 Identities=11% Similarity=0.031 Sum_probs=222.0
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
+.|+|..++|+.++ .+.+++.+..... . + ........|.......++++.+.+.+.+.++ +++++|++++
T Consensus 26 ~~i~l~~~~~~~~~-~v~~a~~~~~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~~~~i~~~s 95 (417)
T 3n0l_A 26 EGLEMIASENFTLP-EVMEVMGSILTNK-Y---A-EGYPGKRYYGGCEFVDEIETLAIERCKKLFN----CKFANVQPNS 95 (417)
T ss_dssp HSEECCTTCCCCCH-HHHHHHTBGGGGC-C---C-CEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCCSS
T ss_pred cCeeeecccCCCCH-HHHHHHhhhhhcc-c---c-ccCCCccccccchHHHHHHHHHHHHHHHHhC----CCCcceEecc
Confidence 56999999988754 4555555421000 0 0 0001112233333445666655555555544 5677788888
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHH---HHhhh-CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDR---DLKWR-TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~---~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
| ++|+..++.+++++||+|+++.|+|..+.. .+... .+..+++++.+ .++.+|++++++++++. ++++
T Consensus 96 G-t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~ 167 (417)
T 3n0l_A 96 G-SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKL 167 (417)
T ss_dssp H-HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSE
T ss_pred H-HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeE
Confidence 8 799999999999999999999999987644 22222 14556666665 56779999999999742 7888
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc-ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
|++++|+| |.+++ +++|.++|++||++||+||+|. +..+.+..... .....+++.|+||+
T Consensus 168 v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--------------~~~~di~~~s~sK~ 228 (417)
T 3n0l_A 168 IVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP--------------FPYAHVVSSTTHKT 228 (417)
T ss_dssp EEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC--------------TTTCSEEEEESSTT
T ss_pred EEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCc--------------cccceEEEeeCccc
Confidence 88888886 77888 6679999999999999999964 33333321111 11245788999998
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcccc---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSSFG---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS 350 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~ 350 (469)
+ +|+|+||++++++.+.+.+......+ ..+...+.++..++... ..+.++..++++.++++++.+.|.+.|++
T Consensus 229 l--~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 304 (417)
T 3n0l_A 229 L--RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN--LSDEWKVYAKQVRTNAQVLANVLMDRKFK 304 (417)
T ss_dssp T--CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred c--CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 7 78889999997566665555443222 22333433433333221 12345677788888889999999988888
Q ss_pred eec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC----CCCCeEEEEeec-----CCHHHHHHH
Q 043923 351 CLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC----TEPGWFRVCFAN-----MSEDTLKLS 420 (469)
Q Consensus 351 v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~----~~~~~iRi~~~~-----~~~e~i~~~ 420 (469)
+.. +..++++|+.++... .+. +.+.++++++||.+.++..+.. ..++.+|+++.. +++++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~ 378 (417)
T 3n0l_A 305 LVSDGTDNHLVLMSFLDRE-----FSG-KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIV 378 (417)
T ss_dssp EGGGSCSSSEEEEECTTSS-----SCH-HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred eccCCCCceEEEEEcccCC-----CCH-HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHH
Confidence 765 234568888876311 011 2344556688999987653322 124579999853 367999999
Q ss_pred HHHHHHHHHhhc
Q 043923 421 MQRLKAFVDSIT 432 (469)
Q Consensus 421 l~~L~~~l~~~~ 432 (469)
+++|++++++..
T Consensus 379 ~~~l~~~l~~~~ 390 (417)
T 3n0l_A 379 SNYIADILDDVN 390 (417)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhccc
Confidence 999999998654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=243.01 Aligned_cols=288 Identities=14% Similarity=0.102 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh-HHHHhhhCCCEEEEeeccC
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF-DRDLKWRTGVEIVPIQCTS 167 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~-~~~~~~~~g~~~~~v~~~~ 167 (469)
.++.+.+.+.+.+.++ . .++++|++|+|+++|+..++.++.++ +.+++..|.|... ...+... |++++.++.+
T Consensus 42 ~~~~~~~~~~la~~~g--~-~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~-g~~~~~v~~~- 115 (362)
T 3ffr_A 42 EEVYKTASDNLKTLLE--L-PSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAGEL-GREAYKEEAA- 115 (362)
T ss_dssp HHHHHHHHHHHHHHTT--C-CTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHHHT-TCEEEEEECC-
T ss_pred HHHHHHHHHHHHHHhC--C-CCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHHHh-CCCeEEEecC-
Confidence 3555555555555544 1 14678999999999999999999888 6666666666622 3345555 9999999986
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc-CeEEEEeccccccccCCCCccch
Q 043923 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK-NIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 168 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~-~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
.++.+|+++++ ++ +++++|++++|+||||.+++ +++|.++|++| |+++|+|++|+. .... ..
T Consensus 116 -~~~~~d~~~l~--~~------~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~---~~~~-~~- 178 (362)
T 3ffr_A 116 -FGKGFYPADIT--VP------ADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSL---PYPK-FD- 178 (362)
T ss_dssp -TTCCCCGGGCC--CC------TTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTT---TSSC-CC-
T ss_pred -CCCCCCHHHHh--cc------CCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEeccccc---CCcc-cC-
Confidence 35678988887 32 38999999999999999999 55588889999 999999999973 2211 11
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhcc-----------------------cc
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMSS-----------------------FG 302 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~~-----------------------~~ 302 (469)
+ ....+++.|+||+++ .+| +|+++++++.+ +.+..... .+
T Consensus 179 --~-----------~~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 242 (362)
T 3ffr_A 179 --W-----------TKIDSVFFSVQKCFGLPAG--LGVWILNDRVI-EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPE 242 (362)
T ss_dssp --T-----------TSCSEEEEETTSTTCCCSC--CEEEEEEHHHH-HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSS
T ss_pred --h-----------hHCcEEEEecccccCCCCc--eEEEEECHHHH-HHhhhccccCCCCcccccHHHHHHHhhcCCCCC
Confidence 1 124578899999998 677 46777755443 33332221 34
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CceEEEEEecccccccCChhHHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLRSNTFEAEM 377 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~----~~g~~~~v~~~~~~~~~~~~~~~ 377 (469)
+.+...+.++..++.... ...+++.+++++++++++.+.|+++ |+++.++ .++.++|+.++. +..
T Consensus 243 ~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~ 312 (362)
T 3ffr_A 243 TPNAMNIFLLGKVTGDML--QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--------LPG 312 (362)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--------CHH
T ss_pred CchHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--------CHH
Confidence 466666666666654211 1125677888888999999999998 8877652 245678888774 123
Q ss_pred HHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 378 ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 378 ~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
++.+.|.+ +||.+.+|..+ ..++++||+++. .+++++++++++|++++
T Consensus 313 ~~~~~l~~-~gi~~~~g~~~--~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 313 EINKILEP-FDMAVGAGYGS--KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHGG-GTEEEEECSGG--GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-CCeEEecCccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 56666664 49999998543 346799999975 48999999999998864
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=244.96 Aligned_cols=330 Identities=15% Similarity=0.100 Sum_probs=218.0
Q ss_pred CCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+. +++ +++.+.+++.+..+ ....++. .+..++++++++.+.+.++ .+
T Consensus 56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~-------------~~~~~~~-~~~~~~~~~l~~~la~~~g------~~ 115 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGE-------------TLWHTSN-VFTNEPALRLGRKLIDATF------AE 115 (420)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHT-------------TCCCCCT-TSCCHHHHHHHHHHHHHSS------CS
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hcccccC-ccCCHHHHHHHHHHHhhCC------CC
Confidence 34689998773 454 34666666655311 1111111 1123555566666555432 58
Q ss_pred cEEEeCChHHHHHHHHHHhcC-------CC-CEEEEccCCCcChHHHHhhhCCCE------------EEEeeccCCCCcc
Q 043923 113 KIVLTAGATSANETLMFCLAE-------PG-EAFLLPTPYYPGFDRDLKWRTGVE------------IVPIQCTSLNGFQ 172 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~-------~g-d~Vl~~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~~~ 172 (469)
+|++++|+++|+..++.++.. +| +.|++.+|+|+++...+....|.+ +..+|.
T Consensus 116 ~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------- 188 (420)
T 2pb2_A 116 RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF------- 188 (420)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------
Confidence 999999999999999998865 67 489999999987654432222543 445543
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhh
Q 043923 173 ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251 (469)
Q Consensus 173 ~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~ 251 (469)
.|++++++++++ ++++|++++++|++|. +++.+++++|.++|++||+++|+||+|.++.+.+.. .. .+...
T Consensus 189 ~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~-~~-~~~~~ 260 (420)
T 2pb2_A 189 NDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL-FA-YMHYG 260 (420)
T ss_dssp TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-SH-HHHHT
T ss_pred CCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH-HH-HHhcC
Confidence 278899888764 7888888777888884 699999999999999999999999999875443332 11 12211
Q ss_pred ccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--hcccccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
...+++ ||||++| +|+|+||++++++ +.+.+.. ....+..+++++.++.++|+.... +..
T Consensus 261 --------~~~dii---t~sK~l~-~G~~iG~~~~~~~-l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-----~~~ 322 (420)
T 2pb2_A 261 --------VTPDIL---TSAKALG-GGFPVSAMLTTQE-IASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-----PEV 322 (420)
T ss_dssp --------CCCSEE---EECGGGG-TTSCCEEEEECHH-HHTTCC----CCEECCCHHHHHHHHHHHHHHSS-----HHH
T ss_pred --------CCCCeE---Eeccccc-CCCceEEEEEhHH-HHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-----ccH
Confidence 123333 7899999 9999999999654 4433322 112234678888887777654321 234
Q ss_pred HHHHHHHHHHHHHHHHhc--CC---ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCe
Q 043923 330 KKRLKQRHRKLVSGLEKA--GI---SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~--g~---~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~ 404 (469)
.++++++++++.+.|+++ ++ ...++. |+|+|++++.... .+..++++.++ ++||.+.|+. +++
T Consensus 323 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~v~~~~~~~----~~~~~l~~~l~-~~Gi~v~~~~------~~~ 390 (420)
T 2pb2_A 323 LQGIHTKRQQFVQHLQAIDEQFDIFSDIRGM-GLLIGAELKPKYK----GRARDFLYAGA-EAGVMVLNAG------ADV 390 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE-TTEEEEEECGGGT----TCHHHHHHHHH-HTTEECEESS------TTE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEec-ceEEEEEECCCch----HHHHHHHHHHH-HCCCEEEeCC------CCE
Confidence 555666667777777654 22 223343 5788888864210 12335667766 4799999873 568
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 405 FRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 405 iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+|++++. .+++++++++++|++++++.
T Consensus 391 iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 391 MRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999764 59999999999999998753
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=242.71 Aligned_cols=339 Identities=14% Similarity=0.074 Sum_probs=216.7
Q ss_pred CCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
..++|++.+. +++ +++.+.+++.+...... ......|+.. ...+++++++++++ +++++
T Consensus 43 ~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~--------~~~~~~~~~~-~~~~l~~~la~~~~--------~~~~~ 105 (429)
T 1s0a_A 43 RRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS--------HVMFGGITHA-PAIELCRKLVAMTP--------QPLEC 105 (429)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCS--------CCCCSSEECH-HHHHHHHHHHHHSC--------TTCCE
T ss_pred CEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcc--------cccccccCCH-HHHHHHHHHHHhCC--------CCCCE
Confidence 4578998876 444 34666666655311000 0001133321 23556666666553 46899
Q ss_pred EEEeCChHHHHHHHHHHhc---C----CCCEEEEccCCCcChHHHHhhhC---------------CCEEEEeeccC-CCC
Q 043923 114 IVLTAGATSANETLMFCLA---E----PGEAFLLPTPYYPGFDRDLKWRT---------------GVEIVPIQCTS-LNG 170 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~---~----~gd~Vl~~~P~y~~~~~~~~~~~---------------g~~~~~v~~~~-~~~ 170 (469)
|++|+|+++|+..++.++. + |||.|++.+|+|+++...+.... ++..++++... ++.
T Consensus 106 v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (429)
T 1s0a_A 106 VFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGE 185 (429)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCccccccc
Confidence 9999999999999988653 2 68999999999987644322111 24444444210 123
Q ss_pred c-ccCHHHHHHHHHHHHhcCCceeEEEEecC--CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 171 F-QITETAIEEAYQLAQKRHLKVKGVLVTNP--SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 171 ~-~~d~~~l~~~i~~~~~~~~~~~~vvl~~P--~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
| .+|++++++++++. ..++++ ++++| +||||. +.+.+++++|.++|++||+++|+||+|.++...+.. ..
T Consensus 186 ~~~~d~~~l~~~l~~~---~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~-~~- 259 (429)
T 1s0a_A 186 WDERDMVGFARLMAAH---RHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKL-FA- 259 (429)
T ss_dssp CCGGGGHHHHHHHHHH---TTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SG-
T ss_pred chHHHHHHHHHHHHhC---CCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchH-HH-
Confidence 4 37899999988742 125554 55667 589996 567888999999999999999999999874332321 11
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh-------cccccCcHHHHHHHHHHhcC
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM-------SSFGLVSSQTQYLLSALLSD 318 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~-------~~~~~~s~~~q~~~~~~l~~ 318 (469)
.+... ...+++ |+||+++ +| +|+||++++++ +.+.+... ...+..+++++.++.++++.
T Consensus 260 ~~~~~--------~~~d~~---t~sK~l~-~G~~~iG~~~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~ 326 (429)
T 1s0a_A 260 CEHAE--------IAPDIL---CLGKALT-GGTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAAANASLAI 326 (429)
T ss_dssp GGGGT--------CCCSEE---EECGGGG-TSSSCCEEEEECHH-HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHH
T ss_pred hhhcC--------CCCCEE---Eeccccc-CCCccceEEEeCHH-HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 11111 112332 7999998 79 99999999654 44444432 12234678888887777653
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCC
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPG 394 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg 394 (469)
..- ....++++++++++.+.|+++ ++....+. |.|+|++++... +..++...++ ++||.+.|+
T Consensus 327 ~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~~~~~~~~------~~~~l~~~l~-~~Gi~v~~~ 393 (429)
T 1s0a_A 327 LES-----GDWQQQVADIEVQLREQLAPARDAEMVADVRVL-GAIGVVETTHPV------NMAALQKFFV-EQGVWIRPF 393 (429)
T ss_dssp HHT-----CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEE-TTEEEEEESSCB------CHHHHHHHHH-HTTEECCCB
T ss_pred HHh-----CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe-eEEEEEEECCcc------cHHHHHHHHH-HCCCEEecc
Confidence 211 123455566677788888765 33333444 468889886421 1235666666 669999873
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 395 SSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 395 ~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+++||+++. .+++++++++++|++++++.+
T Consensus 394 -------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 394 -------GKLIYLMPPYIILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp -------TTEEEECCCTTCCHHHHHHHHHHHHHHTSSGG
T ss_pred -------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 2589999764 499999999999999986544
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=246.47 Aligned_cols=325 Identities=15% Similarity=0.186 Sum_probs=218.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCE---EEEccCCCcChHHHHh
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE----PGEA---FLLPTPYYPGFDRDLK 153 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~---Vl~~~P~y~~~~~~~~ 153 (469)
.|.+..+..+|+++++++++ .++|++|+|+++|+..++.+++. +||. |+++.+.|..+...+.
T Consensus 71 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~ 140 (467)
T 1ax4_A 71 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 140 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHcC----------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh
Confidence 57766788999999999985 36899999999999999999988 9998 8988777777676777
Q ss_pred hhCCCEEEEeeccC----C----CCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCCCHHHHHHHHHHHHhcC
Q 043923 154 WRTGVEIVPIQCTS----L----NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTMSRNELNLLVNIITEKN 224 (469)
Q Consensus 154 ~~~g~~~~~v~~~~----~----~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~~~ 224 (469)
.. |.+++.++.+. . .++.+|+++|++++++.. .+++++|++++|+||| |.+++.+++++|+++|++||
T Consensus 141 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~g 217 (467)
T 1ax4_A 141 LN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217 (467)
T ss_dssp HT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred cc-CCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcC
Confidence 66 99988876532 0 134689999999997521 1268999999999999 89999999999999999999
Q ss_pred eEEEEeccccc--cccC-----CCCccchhhhhhccccccCCcCCeEEEEccCccccCCC-cceEEEEEecCH-HHHHHH
Q 043923 225 IHLISDEIYSG--TVFS-----SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDD-MVVAAA 295 (469)
Q Consensus 225 ~~iI~Deay~~--~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~-GlRiG~li~~~~-~~~~~~ 295 (469)
++||+||++.. .+|. +....++.++.++. .....+++.|+||++|++ | |+++++++ .+.+.+
T Consensus 218 i~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~ 288 (467)
T 1ax4_A 218 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM------YKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLA 288 (467)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH------GGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHHHH
T ss_pred CEEEEEchhhhhcchhccccccccCCCchhhhhhhh------ccccceEEEeccccCCCCcc---eEEEeCCHHHHHHHH
Confidence 99999998652 1100 01112333332100 001124568999999876 4 77777634 444433
Q ss_pred HHhc-------ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccc-
Q 043923 296 TKMS-------SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL- 367 (469)
Q Consensus 296 ~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~- 367 (469)
.... .++..+.....++...+..... .+.++ ...++++++.+.|++.++++..+.+|+++|+++...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~----~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 363 (467)
T 1ax4_A 289 RQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYLH----YRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLV 363 (467)
T ss_dssp HHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHHH----HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTC
T ss_pred HhhccccccccccCCccchHHHHHHHHHHHhhh-hhHHH----HHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhc
Confidence 2221 1222333333323323322110 11122 223456778888887788887788889999993221
Q ss_pred --cccCChhHHHHHHHHHHHhCCeEEeC-CCCC-CC---------CCCCeEEEEee-c-CCHHHHHHHHHHHHHHHHhhc
Q 043923 368 --LRSNTFEAEMELWKKIVYDVKLNISP-GSSC-HC---------TEPGWFRVCFA-N-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 368 --~~~~~~~~~~~l~~~ll~~~GI~v~p-g~~f-~~---------~~~~~iRi~~~-~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
..... .+..+++..|+.++||.+.| |..+ +. ...+++||+++ . .+++++++++++|++++++.+
T Consensus 364 ~~~~~~~-~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 364 PQIPGDQ-FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp TTSCGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccccCC-CCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 00001 12446777775778999999 6532 11 11379999998 3 589999999999999988754
Q ss_pred c
Q 043923 433 T 433 (469)
Q Consensus 433 ~ 433 (469)
+
T Consensus 443 ~ 443 (467)
T 1ax4_A 443 T 443 (467)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=244.98 Aligned_cols=298 Identities=15% Similarity=0.176 Sum_probs=213.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVE 159 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~ 159 (469)
.|.+..+..+|++++|++++ . .+.|++++| ++|+..++.++ +++||.|+++.|+|..+...+... |++
T Consensus 33 ~~~~~~~~~~l~~~la~~~~--------~-~~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~ 101 (388)
T 1b9h_A 33 WRMGGDEVNSFEREFAAHHG--------A-AHALAVTNG-THALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAV 101 (388)
T ss_dssp BTTTCSHHHHHHHHHHHHTT--------C-SEEEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred eecCCHHHHHHHHHHHHHhC--------C-CeEEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 35556788999999999986 2 356777776 89999999999 899999999999999999888877 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc-cc
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT-VF 238 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~-~~ 238 (469)
++.++++++ +|.+|++++++++++ ++++|+ |+||||.+.+ +++|.++|++||++||+|++|+.. .+
T Consensus 102 ~~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~ 168 (388)
T 1b9h_A 102 TVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARW 168 (388)
T ss_dssp EEEECBCTT-TCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEE
T ss_pred EEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCcc
Confidence 999998753 578999999998854 677655 9999999987 556888899999999999999842 22
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH--HHHHHHhccc--------------c
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV--VAAATKMSSF--------------G 302 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~--~~~~~~~~~~--------------~ 302 (469)
.+. .+. ..+ ++.+.||||..+++|.|+||+++++..+ .+.+...... +
T Consensus 169 ~~~---~~~------------~~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 232 (388)
T 1b9h_A 169 QGK---RVG------------ELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAG 232 (388)
T ss_dssp TTE---EGG------------GSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCC
T ss_pred CCe---ecc------------ccc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeeccc
Confidence 211 111 112 5778899977666777999999976544 3333322211 1
Q ss_pred c---CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec------CCceEEEEEecccccccCC
Q 043923 303 L---VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK------SNAGLFCWVDMRHLLRSNT 372 (469)
Q Consensus 303 ~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~------~~~g~~~~v~~~~~~~~~~ 372 (469)
. .+.+...++...+ +++++.+++++++++++.+.|+++ |+++.. +.+++++|+.++...
T Consensus 233 ~~~~~~~~~~a~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 301 (388)
T 1b9h_A 233 SNMRLNEFSASVLRAQL-------ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT---- 301 (388)
T ss_dssp CBCBCBHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----
T ss_pred ccCCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----
Confidence 1 2333322222222 224556777778889999999987 787765 345789999997421
Q ss_pred hhHHHHHHHHHHHhCCeEEeCCCCCCC-----------C----------------CCCeEEEEeec-C-CHHHHHHHHHH
Q 043923 373 FEAEMELWKKIVYDVKLNISPGSSCHC-----------T----------------EPGWFRVCFAN-M-SEDTLKLSMQR 423 (469)
Q Consensus 373 ~~~~~~l~~~ll~~~GI~v~pg~~f~~-----------~----------------~~~~iRi~~~~-~-~~e~i~~~l~~ 423 (469)
..+..++.+.|. ++||.++++..... . ..+.+||++.. + ++++++++++.
T Consensus 302 ~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~ 380 (388)
T 1b9h_A 302 EERRNALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEI 380 (388)
T ss_dssp HHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHH
T ss_pred cccHHHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHH
Confidence 012335666665 56999987643110 0 01359999976 6 89999999999
Q ss_pred HHHHHHh
Q 043923 424 LKAFVDS 430 (469)
Q Consensus 424 L~~~l~~ 430 (469)
|++++++
T Consensus 381 l~~~~~~ 387 (388)
T 1b9h_A 381 IADAVAR 387 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=245.71 Aligned_cols=349 Identities=15% Similarity=0.126 Sum_probs=215.8
Q ss_pred CCeeeeecccc--cc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAEN--QL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
..+||++.+.+ ++ +++.+.+++.+.. .....+. ..+..+++.++++.+.+.++ +++++
T Consensus 43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~-~~~~~~~~~~l~~~la~~~~----~~~~~ 104 (433)
T 1zod_A 43 RAILDFTSGQMSAVLGHCHPEIVSVIGEYA-------------GKLDHLF-SEMLSRPVVDLATRLANITP----PGLDR 104 (433)
T ss_dssp CEEEETTHHHHTCTTCBTCHHHHHHHHHHH-------------HHCCCCC-TTCCCHHHHHHHHHHHHHSC----TTCCE
T ss_pred CEEEEcccchhccccCCCCHHHHHHHHHHH-------------HhCcccc-cccCCHHHHHHHHHHHHhCC----CCcCE
Confidence 45789877654 33 2455666665531 1110011 11223444555555554443 46789
Q ss_pred EEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhh-------------CCCEEEEeeccCCCCcc------
Q 043923 114 IVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWR-------------TGVEIVPIQCTSLNGFQ------ 172 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~-------------~g~~~~~v~~~~~~~~~------ 172 (469)
|++|+|+++|+..+++.+. ..++.|++.+|+|+++...+... .|+..+++|......|.
T Consensus 105 v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (433)
T 1zod_A 105 ALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYD 184 (433)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEEC
T ss_pred EEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhh
Confidence 9999999999999998653 24579999999998765432211 14455544422111222
Q ss_pred --cCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 173 --ITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 173 --~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
+|++++++++++. ...++++ ++++| +||||. +.+.+++++|.++|++||++||+||+|.++.+.+.. .. .+
T Consensus 185 ~~~d~~~le~~l~~~--~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~-~~-~~ 259 (433)
T 1zod_A 185 YLAELDYAFDLIDRQ--SSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM-FA-CQ 259 (433)
T ss_dssp HHHHHHHHHHHHHHH--CCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-ST-HH
T ss_pred HHHHHHHHHHHHHhc--CCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchH-hH-Hh
Confidence 3688898888642 1125554 55677 588996 678999999999999999999999999975333321 11 12
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--c--ccccCcHHHHHHHHHHhcCchhhHH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--S--SFGLVSSQTQYLLSALLSDKKFTQN 324 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~--~~~~~s~~~q~~~~~~l~~~~~~~~ 324 (469)
... .... +.|+||+|| +|+|+||+++++ .+.+.+... . ..+..+++++.++.++++...-
T Consensus 260 ~~~--------~~~d---i~s~sK~~~-~G~~ig~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~--- 323 (433)
T 1zod_A 260 RDG--------VTPD---ILTLSKTLG-AGLPLAAIVTSA-AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR--- 323 (433)
T ss_dssp HHT--------CCCS---EEEECHHHH-TTSSCEEEEECH-HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH---
T ss_pred hcC--------CCCC---EEEeccccc-CCCCeeEEEEhH-HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---
Confidence 211 1122 238999999 599999999965 454444432 1 2233678888877777653110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc----C-CceecCCceEEEEEecccccccC--ChhHHHHHHHHHHHhCCeEEeCCCCC
Q 043923 325 YISENKKRLKQRHRKLVSGLEKA----G-ISCLKSNAGLFCWVDMRHLLRSN--TFEAEMELWKKIVYDVKLNISPGSSC 397 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~~----g-~~v~~~~~g~~~~v~~~~~~~~~--~~~~~~~l~~~ll~~~GI~v~pg~~f 397 (469)
....++++++++++.+.|+++ + +...++. |.|+|++++...... ......+++..++ ++||.+.||..|
T Consensus 324 --~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~ 399 (433)
T 1zod_A 324 --DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR-GLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLP 399 (433)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCT
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCC
Confidence 112344444555555555543 3 2233344 467888886421000 0122345677766 679999999876
Q ss_pred CCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 398 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 398 ~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+ .++++||+++. .+++++++++++|++++++.
T Consensus 400 ~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 400 G--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp T--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 5 35799998764 59999999999999998653
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=240.29 Aligned_cols=346 Identities=12% Similarity=0.096 Sum_probs=211.2
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHH-HHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALV-EFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia-~~l~~~~~~~~~~~~~~i~~t 117 (469)
+.|+|..++|+. ++.+.+++.+..... .. .+ ......|+.... .++.++++ +.+.+.++ .+. ..+++
T Consensus 33 ~~i~l~~~~~~~-~~~v~~a~~~~~~~~-~~-~~---~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~----~~~-~~v~~ 100 (425)
T 3ecd_A 33 SQVELIASENIV-SRAVLDAQGSVLTNK-YA-EG---YPGKRYYGGCEF-ADEVEALAIERVKRLFN----AGH-ANVQP 100 (425)
T ss_dssp HSEECCTTCCCC-CHHHHHHHTSGGGSS-CT-TC----------------CCHHHHHHHHHHHHHHT----CSE-EECCC
T ss_pred cceeeecccCCC-CHHHHHHHhhhhhcc-cc-cC---CCcchhcCCChH-HHHHHHHHHHHHHHHhC----CCC-ceeec
Confidence 469999999887 445555555431000 00 00 001111222211 12333333 44444433 222 23458
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcC---hHHHHhhhCCC--EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPG---FDRDLKWRTGV--EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~---~~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|+++|+..++.+++++||.|+++.|+|.. +....... |. +++.++.+. +++.+|++++++++++. ++
T Consensus 101 ~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~ 173 (425)
T 3ecd_A 101 HSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALS-GKWFNALQYGVSR-DTMLIDYDQVEALAQQH-----KP 173 (425)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCT-TTSSCCHHHHHHHHHHH-----CC
T ss_pred CchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhc-ccceeeeecCCCc-ccCccCHHHHHHHHhhc-----CC
Confidence 888999999999999999999999999987 22222122 44 555666553 45789999999999742 78
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc-ccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
++|++++|+||+. . ++++|.++|++||++||+||+|... .+.+.. .+.. + ...+++.|+|
T Consensus 174 ~~v~~~~~~~~~~--~---~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~-~~~~---~----------~~di~~~s~s 234 (425)
T 3ecd_A 174 SLIIAGFSAYPRK--L---DFARFRAIADSVGAKLMVDMAHIAGVIAAGRH-ANPV---E----------HAHVVTSTTH 234 (425)
T ss_dssp SEEEEECSCCCSC--C---CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSS-CCGG---G----------TCSEEEEESS
T ss_pred cEEEEccccCCCc--C---CHHHHHHHHHHcCCEEEEECcChHhhhhcccc-cCch---h----------cCcEEEecCC
Confidence 9999999999743 3 3678999999999999999996432 233322 2211 1 1237789999
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHhcccc---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKMSSFG---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG 348 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g 348 (469)
|++ +|.|+||++++++.+.+.+......+ ..+.....++..++.. ...++++..++++.++++++.+.|.+.|
T Consensus 235 K~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g 310 (425)
T 3ecd_A 235 KTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGE--ALTDDFKTYIDRVLANAQALGDVLKAGG 310 (425)
T ss_dssp GGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 988 67789999998666665554433221 2233333333333321 1123456778888889999999999999
Q ss_pred CceecC-CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHHH
Q 043923 349 ISCLKS-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN-----MSEDTLK 418 (469)
Q Consensus 349 ~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~~~~iRi~~~~-----~~~e~i~ 418 (469)
+++.++ .+++++|+.++.... +. +.+.+.++++||.+. ||..+....++++|+++.. .++++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~ 384 (425)
T 3ecd_A 311 VDLVTGGTDNHLLLVDLRPKGL-----KG-AQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFR 384 (425)
T ss_dssp CEEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHH
T ss_pred CeeccCCCCceEEEEEeCCCCC-----CH-HHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHH
Confidence 888754 466888998864211 11 234555677899999 5543333345689999543 2489999
Q ss_pred HHHHHHHHHHHhhc
Q 043923 419 LSMQRLKAFVDSIT 432 (469)
Q Consensus 419 ~~l~~L~~~l~~~~ 432 (469)
+++++|++++++.+
T Consensus 385 ~~~~~l~~~l~~~~ 398 (425)
T 3ecd_A 385 EVGRLILEVFEALR 398 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999999998873
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-27 Score=242.09 Aligned_cols=356 Identities=8% Similarity=0.012 Sum_probs=225.8
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCccccccc-ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFREL-ALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
....+||++.+ .+++. ++.+.+++.+.. ... ..|....+..+++.++++++.+..+ ..
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~ 111 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQA-------------KNLAYYHAYVGHGTEASITLAKMIIDRAP----KG 111 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHHSCCCCCTTCCCHHHHHHHHHHHHHSC----TT
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHhhCC----CC
Confidence 34468999887 55553 466666665421 111 1233334446777777777776543 46
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccC---
Q 043923 111 TSKIVLTAGATSANETLMFCLAE--------PGEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTS--- 167 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~--------~gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~--- 167 (469)
.++|++|+|+++|+..+++++.. +++.|++.+|+|+++...+....|. .+..++...
T Consensus 112 ~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (460)
T 3gju_A 112 MSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFR 191 (460)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGG
T ss_pred cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCcccc
Confidence 78999999999999999998863 5699999999998876544332121 233344221
Q ss_pred CCCcccC--------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 168 LNGFQIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 168 ~~~~~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
.+++..+ +++|++++++. ...++++|++..++|++|. +++.+.+++|.++|++||+++|+||+|.++..
T Consensus 192 ~~~~g~~~~~~~~~~~~~le~~i~~~--~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 192 RTDRSMSEEQFSQHCADKLEEMILAE--GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp CSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred CCccccChhHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 0111223 57788877642 1125666555544677776 77888999999999999999999999997533
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH---------hcccccCcHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK---------MSSFGLVSSQT 308 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~---------~~~~~~~s~~~ 308 (469)
.+.. .. .+... ....+ .+|||+++ .| +|+||++++++ +.+.+.. ....+..++++
T Consensus 270 ~g~~-~~-~~~~~--------~~pdi---~t~sK~l~-gG~~~lg~v~~~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~ 334 (460)
T 3gju_A 270 LGTM-FG-SDHYG--------IKPDL---ITIAKGLT-SAYAPLSGVIVADR-VWQVLVQGSDKLGSLGHGWTYSAHPIC 334 (460)
T ss_dssp TSSS-CH-HHHHT--------CCCSE---EEECGGGT-TTSSCCEEEEEEHH-HHHHHHHHHHHHCSCSCCCTTTTCHHH
T ss_pred cccc-ch-HhhcC--------CCCCe---eeeehhhc-CCCCCeEEEEECHH-HHHHHhcccccccccccCCCCCCCHHH
Confidence 3322 11 12211 11222 37899997 67 89999999554 4444431 11233478888
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CceecCCceEEEEEecccccccC-----ChhHHHHHHHH
Q 043923 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSN-----TFEAEMELWKK 382 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~~~~~~-----~~~~~~~l~~~ 382 (469)
+.++.++|+.... ++.+++.++..+..++.|.+.+.+++ +....+.+ .|+++.+....... ......+++..
T Consensus 335 ~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (460)
T 3gju_A 335 VAAGVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDG-MLAAVEFVADKDDRVFFDASQKIGPQVATA 412 (460)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTTTBCCCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeee-EEEEEEEccCccccccccchHHHHHHHHHH
Confidence 8888888864221 22345555555555666666666654 33344444 67778775421110 00113345566
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++ ++||.++|+. ..+++||++.. .+++++++++++|++++++..+
T Consensus 413 l~-~~Gv~v~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 413 LA-ASGVIGRAMP-----QGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp HH-HTTEECEECS-----SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HH-HCCeEEecCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 55 5699999875 25789999764 4999999999999999987654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-28 Score=246.72 Aligned_cols=359 Identities=12% Similarity=0.057 Sum_probs=219.1
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+ .+++. ++.+.+++.+. +.....|....+..+++.++++++.+.++. -..+
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~~~ 126 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQ-------------ATHFTHTCFMVTPYEQYVQVAELLNALTPG---DHDK 126 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHH-------------HHHCSCCTTTTSCCHHHHHHHHHHHHHSSC---SSCE
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHHH-------------HHhccccccCcCCCHHHHHHHHHHHHhCCC---CCCc
Confidence 3468999987 66663 46666666553 122233444445567777777777766431 1257
Q ss_pred cEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCC-------------EEEEeecc--CCCCcccC-
Q 043923 113 KIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGV-------------EIVPIQCT--SLNGFQIT- 174 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~-------------~~~~v~~~--~~~~~~~d- 174 (469)
+|++|+|+++|+..+++.+.. .++.|++.+|+|+++...+....+. .+..+|.+ ..+.+..+
T Consensus 127 ~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (453)
T 4ffc_A 127 RTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTG 206 (453)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCH
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccch
Confidence 999999999999999977642 4589999999998876554332111 34444433 11112223
Q ss_pred HHHHHHHHHHHHhc-CCceeEEEEecCCCCCC--CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhh
Q 043923 175 ETAIEEAYQLAQKR-HLKVKGVLVTNPSNPLG--TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251 (469)
Q Consensus 175 ~~~l~~~i~~~~~~-~~~~~~vvl~~P~NPtG--~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~ 251 (469)
.+.++..++..... .++..++|+++|+||+| .+.+.+.+++|.++|++||+++|+||+|.++...+.. ... +..
T Consensus 207 ~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~-~a~-~~~- 283 (453)
T 4ffc_A 207 EEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAW-FAS-EHE- 283 (453)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STH-HHH-
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccccc-chh-hhc-
Confidence 23333222221110 12445678888988776 4558888999999999999999999999885433321 111 111
Q ss_pred ccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
+....+.||||++| .|+|+||++++ +.+.+.+.... ..+..+++++.++.++|+.... .+.+++.
T Consensus 284 ----------~~~pdi~t~sK~~~-~G~~~G~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~ 350 (453)
T 4ffc_A 284 ----------GIVPDIVTMAKGIA-GGMPLSAVTGR-AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARA 350 (453)
T ss_dssp ----------TCCCSEEEECGGGG-TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred ----------CCCcchHhhhhhhc-CCcCeEEEEEC-HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHH
Confidence 11122347999998 59999999995 44444333222 2344788888888888763211 1123333
Q ss_pred HHHHHHHHHHHHHHHHhcC-CceecCCceEEEEEecccccc-cCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEE
Q 043923 330 KKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLR-SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 407 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~~~~-~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi 407 (469)
++.....++.|.+.+.+++ +....+ .|+|+|+.+..... ........+++..++ ++||.+.|+..| .+++|+
T Consensus 351 ~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi 424 (453)
T 4ffc_A 351 RAIEASVTSRLSALAEEVDIIGEVRG-RGAMLAIEIVKPGTLEPDAALTKSIAAEAL-SQGVLILTCGTF----GNVIRL 424 (453)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEEE-ETTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECCEECTT----SCEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEe-eceEEEEEEecCcccCCCHHHHHHHHHHHH-hCCCEEecCCCC----CCEEEE
Confidence 3333333344444444443 233333 35788888743100 011123345666665 569999998654 358999
Q ss_pred Eeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 408 CFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 408 ~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+++. .+++++++++++|++++++..+
T Consensus 425 ~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 425 LPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9876 4999999999999999987643
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=245.90 Aligned_cols=327 Identities=13% Similarity=0.158 Sum_probs=222.6
Q ss_pred eeeccccccCh-HHHHHHHhcCCCccccccCCcccccccccCCC-CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCC
Q 043923 42 QMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQD-YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAG 119 (469)
Q Consensus 42 ~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G 119 (469)
+|+.++|++++ +.+.+++.+. +. ...|++ ..+..+|++++|++++ .++|++|+|
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~-------------~~-~~~y~~~~~~~~~l~~~la~~~~----------~~~v~~~~g 75 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRA-------------LD-SQWLSNGGPLVREFEERVAGLAG----------VRHAVATCN 75 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHH-------------HH-HTCCSSSCHHHHHHHHHHHHHHT----------SSEEEEESC
T ss_pred cccccCCCCCChHHHHHHHHHH-------------Hh-cCCcccCCHHHHHHHHHHHHHhC----------CCeEEEeCC
Confidence 78999998864 5566665542 11 125876 6788999999999995 358999999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEec
Q 043923 120 ATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN 199 (469)
Q Consensus 120 ~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~ 199 (469)
+++|+..++.++. +||.|+++.|+|..+...+... |++++.+++++ .+|.+|++++++++++ ++++|++++
T Consensus 76 gt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~ 146 (424)
T 2po3_A 76 ATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWI-GLTPVFADIDP-DTGNLDPDQVAAAVTP------RTSAVVGVH 146 (424)
T ss_dssp HHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTSSBCHHHHGGGCCT------TEEEEEEEC
T ss_pred HHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHc-CCEEEEEecCC-CcCCcCHHHHHHhhCc------CCcEEEEEC
Confidence 9999999999985 7899999999999999888877 99999999875 4678999999988754 788888764
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc-ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc
Q 043923 200 PSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG 278 (469)
Q Consensus 200 P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 278 (469)
|||...+ +++|+++|+++|++||+||+|+ ++.+++. ++. .... +++.||||..+++|
T Consensus 147 ---~tG~~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~------------~~~d-i~~~S~sk~K~l~~ 204 (424)
T 2po3_A 147 ---LWGRPCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAG------------SLGD-AEVFSFHATKAVNA 204 (424)
T ss_dssp ---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETT------------SSSS-EEEEECCTTSSSCC
T ss_pred ---CCCCcCC---HHHHHHHHHHcCCEEEEECccccCCeECCe---ecc------------cccC-EEEEeCCCCCCccC
Confidence 8998755 6668899999999999999998 4444332 111 1122 78899996666677
Q ss_pred ceEEEEEecCHHHHHHHHHhccccc-----------CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 279 FRVGAIYSNDDMVVAAATKMSSFGL-----------VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 279 lRiG~li~~~~~~~~~~~~~~~~~~-----------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
.|+||++++++.+.+.+......+. ...+.+.++...+.. .+.++...++..+.++++.+.|+++
T Consensus 205 ~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~ 280 (424)
T 2po3_A 205 FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHLADL 280 (424)
T ss_dssp SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999975555554443322110 001122222222221 2234556666667777888888876
Q ss_pred -CCceec-CCce----EEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--------------CCCe---
Q 043923 348 -GISCLK-SNAG----LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--------------EPGW--- 404 (469)
Q Consensus 348 -g~~v~~-~~~g----~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--------------~~~~--- 404 (469)
++++.+ +.++ +++++.++..... .+..++.+. +.++||.+.+. |... .++.
T Consensus 281 ~g~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~-L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~ 354 (424)
T 2po3_A 281 PGVLVADHDRHGLNNHQYVIVEIDEATTG---IHRDLVMEV-LKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERL 354 (424)
T ss_dssp TTEEECCGGGGSCCCCCCEEEEECHHHHS---SCHHHHHHH-HHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHH
T ss_pred CCccccCCCCCCccccEEEEEEECCccch---hhHHHHHHH-HHHCCCceecc--cCCccccchhhhhcCCCCChhHHHH
Confidence 777765 3332 2344666531000 012245554 45779999872 2210 0122
Q ss_pred ----EEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 405 ----FRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 405 ----iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+|+++.. .+++++++++++|++++++..+
T Consensus 355 ~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 355 AARVLSLPTGTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp HTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 6666433 5999999999999998876544
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=239.94 Aligned_cols=300 Identities=11% Similarity=0.105 Sum_probs=209.8
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEE
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEI 160 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~ 160 (469)
|.+..+..+|++++|++++ .+++++++|+++|+..++.++ +++||.|+++.|+|..+...+... |+++
T Consensus 35 ~~~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~ 103 (393)
T 1mdo_A 35 ITTGPKNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANP 103 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEE
T ss_pred cCCChHHHHHHHHHHHHhC----------CCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHC-CCEE
Confidence 3345678999999999985 347999999999999999999 899999999999999998888877 9999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc-ccC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT-VFS 239 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~-~~~ 239 (469)
+.+++++ +++.+|++++++++++ ++++|+++ ||||.+.+ +++|.++|+++|+++|+||+|+.. .+.
T Consensus 104 ~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~ 170 (393)
T 1mdo_A 104 VMVDVDR-DTLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYK 170 (393)
T ss_dssp EEECBCT-TTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEET
T ss_pred EEEeccC-CcCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeEC
Confidence 9999875 3577999999988864 78887775 48999877 566888999999999999999852 232
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc-----------------
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG----------------- 302 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~----------------- 302 (469)
+. . + . . .++++.|+||+.+++|.|+||++++++.+.+.+......+
T Consensus 171 ~~---~---~-~--------~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (393)
T 1mdo_A 171 GR---H---I-G--------A--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQA 233 (393)
T ss_dssp TE---E---T-T--------S--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CC
T ss_pred Ce---e---c-C--------C--CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccc
Confidence 21 1 1 0 1 5688899993333455589999997565555444332211
Q ss_pred ---------cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec-C-----CceEEEEEecccc
Q 043923 303 ---------LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK-S-----NAGLFCWVDMRHL 367 (469)
Q Consensus 303 ---------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~-~-----~~g~~~~v~~~~~ 367 (469)
..+.+...++...+.. +++..++.++.++++.+.|+++++++.. + .+++++|+.++..
T Consensus 234 ~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (393)
T 1mdo_A 234 EVLAPGYKYNLPDLNAAIALAQLQK-------LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEA 306 (393)
T ss_dssp EESSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHH
T ss_pred cccccCccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEeccc
Confidence 1233333333333322 3344445556778888889887766542 2 3456789988731
Q ss_pred cccCChhHHHHHHHHHHHhCCeEEeCCCCCC--------------CC-----CCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 368 LRSNTFEAEMELWKKIVYDVKLNISPGSSCH--------------CT-----EPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 368 ~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~--------------~~-----~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
... .+..++.+.+. ++||.+++|..+. .. ..+++|+++.. .+++++++++++|+++
T Consensus 307 ~~~---~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 382 (393)
T 1mdo_A 307 RCG---ITRDALMASLK-TKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI 382 (393)
T ss_dssp HHS---SCHHHHHHHHH-HTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ccc---cCHHHHHHHHH-hCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 000 11234566655 5799999886441 00 13479999975 5999999999999998
Q ss_pred HHhhcc
Q 043923 428 VDSITT 433 (469)
Q Consensus 428 l~~~~~ 433 (469)
++....
T Consensus 383 ~~~~~~ 388 (393)
T 1mdo_A 383 AGQGSH 388 (393)
T ss_dssp HC----
T ss_pred HhcCCc
Confidence 776554
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=248.93 Aligned_cols=308 Identities=13% Similarity=0.133 Sum_probs=225.6
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE--EEeCChHHHHHHHHHHhcCCC--------CEEEEccCCCcChHHH
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI--VLTAGATSANETLMFCLAEPG--------EAFLLPTPYYPGFDRD 151 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i--~~t~G~~~al~~~~~~l~~~g--------d~Vl~~~P~y~~~~~~ 151 (469)
|....+..++++++++++.+.+| .+.+++++ ++|+|+++++..++.++..+| |.|+++.|+|..+...
T Consensus 131 ~~~~p~~~~le~~l~~~la~~~g--~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~ 208 (514)
T 3mad_A 131 PDLWPSTAKFEAEVVAMTAHMLG--GDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA 208 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--GGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHcC--CCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH
Confidence 33444667888888888888766 22334788 999999999999999998776 8999999999999999
Q ss_pred HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q 043923 152 LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDE 231 (469)
Q Consensus 152 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~De 231 (469)
+... |++++.+|++. ++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|++||+++|+||
T Consensus 209 ~~~~-G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 209 AQYF-GIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHH-TCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHc-CCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 9888 99999999874 678999999999865 7899999999999999988 5668889999999999999
Q ss_pred cccccccC-----CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc------
Q 043923 232 IYSGTVFS-----SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS------ 300 (469)
Q Consensus 232 ay~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~------ 300 (469)
+|+++.+. +.....+... ..+.++++.|++|+++ +|.++|+++++++.+.........
T Consensus 277 a~~~~~~~~~~~~g~~~~~~~~~----------~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 345 (514)
T 3mad_A 277 CLGGFILPWAERLGYPVPPFDFR----------LEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGL 345 (514)
T ss_dssp TTTTTTHHHHHHTTCCCCCCSTT----------STTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCS
T ss_pred ccccccchhHHhcCCCCCccccc----------CCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCc
Confidence 99976441 1101111111 2355788899999874 788999999977665432111110
Q ss_pred ------cccCcH---HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEeccccccc
Q 043923 301 ------FGLVSS---QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRS 370 (469)
Q Consensus 301 ------~~~~s~---~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~ 370 (469)
.+..+. +++.++...+. ...+++..+++.++++++.+.|+++ ++++..+..+ ++|+..+..
T Consensus 346 ~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~--- 416 (514)
T 3mad_A 346 YFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL--- 416 (514)
T ss_dssp EEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS---
T ss_pred ccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC---
Confidence 111122 23333333332 2345677788888899999999987 8888776664 667765421
Q ss_pred CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhcc
Q 043923 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 371 ~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+..++.+.|. ++||.+ +|..| ++++|++++. .+++++++++++|++++++.++
T Consensus 417 ----~~~~l~~~L~-~~Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 417 ----NIYQVMEEMA-GRGWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp ----CHHHHHHHHH-TTTCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHH-hcCCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1235666665 569988 55443 4679999974 2679999999999999987765
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=247.42 Aligned_cols=302 Identities=14% Similarity=0.143 Sum_probs=219.9
Q ss_pred CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCC-----EEEEccCCCcChHHHHhhh
Q 043923 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL----AEPGE-----AFLLPTPYYPGFDRDLKWR 155 (469)
Q Consensus 85 ~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd-----~Vl~~~P~y~~~~~~~~~~ 155 (469)
.+|..++++++++++.+.+| ++. .+++++|+++++..++.++ .++|| +|+++.|+|+.+...+...
T Consensus 102 ~~g~~~l~~~l~~~la~~~g----~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~ 176 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTG----MDA-ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA 176 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----CSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHC----CCc-eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC
Confidence 45677889999999888776 222 4678899999998766554 35787 9999999999999888877
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
|++++.+|++. ++.+|+++|++++++ ++++|++++| ||||.+. +++++|+++|++||+++|+||+|..
T Consensus 177 -G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~ 244 (474)
T 1wyu_B 177 -GYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLN 244 (474)
T ss_dssp -TCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGG
T ss_pred -CCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhh
Confidence 99999999873 577999999998864 7899999998 6899883 3578899999999999999999986
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC-c---ceEEEEEecCHHHHHHHH-H-------------
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP-G---FRVGAIYSNDDMVVAAAT-K------------- 297 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~-G---lRiG~li~~~~~~~~~~~-~------------- 297 (469)
..++ ..+...+ +.++++.|+||+|+.| | +|+||++++++.+ +.+. .
T Consensus 245 ~~~g---~~~~~~~------------g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~-~~l~~~~~~~~g~~~~~~~ 308 (474)
T 1wyu_B 245 AIMG---WARPGDM------------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA-PYLPVPLVERGEEGFYLDF 308 (474)
T ss_dssp GTTT---TCCHHHH------------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG-GGCCSCEEEECSSCEEEEC
T ss_pred hhcc---CCCcccC------------CCcEEEEeCccccccCCCCCCCCeEEEEEcHHHH-HhCCCCeeeccCCeeEecc
Confidence 5432 1222222 4567888999999766 4 6999999976543 2221 0
Q ss_pred --------hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE-EEEeccccc
Q 043923 298 --------MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-CWVDMRHLL 368 (469)
Q Consensus 298 --------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~-~~v~~~~~~ 368 (469)
...+ +.+.+.+.++..++.... .+.+++..+++.++++++.+.|++.|+++..+...+. +|++++..
T Consensus 309 ~~~~~~~~~~~~-~~~~~~~~aa~~~l~~~g--~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~- 384 (474)
T 1wyu_B 309 DRPKSIGRVRSF-YGNFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEG- 384 (474)
T ss_dssp CCTTCCCCSSST-TSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTT-
T ss_pred cCcccCcccccC-cCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCC-
Confidence 0111 245566666666665322 3456777888889999999999988887633322221 55666211
Q ss_pred ccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 369 RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 369 ~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+..+++++|++ +||.+ |+..|.....+++||+++. .+++++++++++|++++++
T Consensus 385 -----~~~~~l~~~L~~-~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 385 -----FRALDLAKGLLE-LGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp -----CCHHHHHHHHHH-TTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred -----CCHHHHHHHHHH-CCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 123457777764 59985 6666643346789999985 3899999999999999876
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=243.89 Aligned_cols=325 Identities=11% Similarity=0.044 Sum_probs=219.1
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccc-cCCC--CCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELA-LFQD--YHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~--~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
.+.+.|+.+.+..+++.+.+++.+..... . + ..... .|+. .....++++.++++++ +++++|
T Consensus 27 ~~~~yld~~~~~~~~~~v~~a~~~~l~~~-~---~---~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v 91 (416)
T 1qz9_A 27 EGVIYLDGNSLGARPVAALARAQAVIAEE-W---G---NGLIRSWNSAGWRDLSERLGNRLATLIG--------ARDGEV 91 (416)
T ss_dssp TTCEECCTTTSCCCBTTHHHHHHHHHHTC-C---C---CCGGGHHHHTSGGGHHHHHHHHHHTTTT--------CCTTSE
T ss_pred CCeEeecCCCcCCCcHHHHHHHHHHHHHH-H---h---ccCccccchhhHHHHHHHHHHHHHHHcC--------CCcccE
Confidence 46788888877765666666665521000 0 0 00000 1110 1334677777777664 567899
Q ss_pred EEeCChHHHHHHHHHHhc------CCCCEE-EEccCCCcChHHHHh---hhC--CCEEEEeeccCCCCcccCHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLA------EPGEAF-LLPTPYYPGFDRDLK---WRT--GVEIVPIQCTSLNGFQITETAIEEAY 182 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~------~~gd~V-l~~~P~y~~~~~~~~---~~~--g~~~~~v~~~~~~~~~~d~~~l~~~i 182 (469)
++|+|+++++..++.+++ ++||.| ++..++|+.+...+. ... |++++.+|. ++++++++
T Consensus 92 ~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i 162 (416)
T 1qz9_A 92 VVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAI 162 (416)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHC
T ss_pred EEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHh
Confidence 999999999998888876 899875 454557775544322 122 888888874 56777776
Q ss_pred HHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCC
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN 262 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 262 (469)
++ ++++|++++|+||||.+++ +++|.++|++||+++|+||+|+ ++... .++..+ +
T Consensus 163 ~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~---~g~~~-~~~~~~------------~ 217 (416)
T 1qz9_A 163 DQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHS---AGAVP-VDLHQA------------G 217 (416)
T ss_dssp ST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTT---TTTSC-CCHHHH------------T
T ss_pred CC------CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccc---ccCcC-CChhhc------------C
Confidence 53 7899999999999999998 5668899999999999999997 33221 222222 3
Q ss_pred eEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHh-------------------------cccccCcHHHHHHHHHHh
Q 043923 263 RVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKM-------------------------SSFGLVSSQTQYLLSALL 316 (469)
Q Consensus 263 ~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~-------------------------~~~~~~s~~~q~~~~~~l 316 (469)
..+++.|++|+++ +|.++ |+++++++.+.. +... ...++.+...+.++.+++
T Consensus 218 ~d~~~~s~~K~l~-~g~~~~g~l~~~~~~~~~-l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 295 (416)
T 1qz9_A 218 ADYAIGCTYKYLN-GGPGSQAFVWVSPQLCDL-VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGL 295 (416)
T ss_dssp CSEEEECSSSTTC-CCTTCCCEEEECTTTTTT-SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHH
T ss_pred CCEEEecCcccCC-CCCCCeEEEEECHHHHhc-cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHH
Confidence 4578889999985 77888 999997654321 1111 012235556665555555
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCC----ceEEEEEecccccccCChhHHHHHHHHHHHhCC
Q 043923 317 SDKKFTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSN----AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVK 388 (469)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~----~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~G 388 (469)
+... ..++++.+++++++++++.+.|+++ |+++..+. .+.++|+.++. ..++.+.|. ++|
T Consensus 296 ~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~l~-~~g 363 (416)
T 1qz9_A 296 DVFA--QTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---------GYAVIQALI-DRG 363 (416)
T ss_dssp HHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---------HHHHHHHHH-TTT
T ss_pred HHHH--hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---------HHHHHHHHH-hCC
Confidence 4211 1125667788888889999999886 88877663 35678998863 224666655 669
Q ss_pred eEEeCCCCCCCCCCCeEEEEee--cCCHHHHHHHHHHHHHHHHhh
Q 043923 389 LNISPGSSCHCTEPGWFRVCFA--NMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 389 I~v~pg~~f~~~~~~~iRi~~~--~~~~e~i~~~l~~L~~~l~~~ 431 (469)
|.+... .++++||+++ ..+++++++++++|++++++.
T Consensus 364 i~~~~~------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 364 VIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp EECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cEeccC------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 987532 3578999997 359999999999999998764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-27 Score=239.64 Aligned_cols=295 Identities=14% Similarity=0.143 Sum_probs=202.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----Hhhh
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWR 155 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~ 155 (469)
..|+ ..|.+ +++++++++.+.++ .+++++++|+++|+..++. ++++||.|+++.|.|..+... +...
T Consensus 125 ~~Y~-~~g~~-~~~~l~~~la~~~g------~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~ 195 (464)
T 1ibj_A 125 YDYT-RSGNP-TRDALESLLAKLDK------ADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRS 195 (464)
T ss_dssp CSBT-TTCCH-HHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGG
T ss_pred cccc-CCCCH-HHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHc
Confidence 4566 34544 78888888877765 3477778888999998875 779999999999999988754 3445
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
|++++.++.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|++||+++|+||+|..
T Consensus 196 -G~~v~~v~~~-------d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~ 258 (464)
T 1ibj_A 196 -GVVVKRVNTT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMS 258 (464)
T ss_dssp -TCEEEEECTT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTC
T ss_pred -CCEEEEeCCC-------CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence 9999999863 78889888764 8999999999999999997 66799999999999999999974
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC-CcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHH
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL-PGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLL 312 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~-~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~ 312 (469)
..+ .... ..+.++++.|+||+++. +|+|+||++++++.+.+.+..... .+.++++.++++
T Consensus 259 g~~-----~~~~------------~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~ 321 (464)
T 1ibj_A 259 PVL-----SRPL------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLC 321 (464)
T ss_dssp TTT-----CCGG------------GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred ccc-----CChh------------hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 211 1111 12578899999999964 489999999976566555544432 234678888888
Q ss_pred HHHhcCchhhHHHHHHHHHHHHHHHHHHH----------HHHHhc-CCceecCC---ceEEEEEecccccccCChhHHHH
Q 043923 313 SALLSDKKFTQNYISENKKRLKQRHRKLV----------SGLEKA-GISCLKSN---AGLFCWVDMRHLLRSNTFEAEME 378 (469)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~----------~~L~~~-g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~ 378 (469)
.+.+..... .++...+......+++. +.|+++ ++++.+++ .|.++++.+++. .....
T Consensus 322 ~~al~~~~~---r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~------~~~~~ 392 (464)
T 1ibj_A 322 LRGIKTMAL---RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV------ALSKH 392 (464)
T ss_dssp HHHHTTHHH---HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH------HHHHH
T ss_pred HhchhhHHH---HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH------HHHHH
Confidence 888775321 12222211221112222 122222 33444443 245788888521 11223
Q ss_pred HHHHHHHhCCeEEeCCC------------CCCC---------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 379 LWKKIVYDVKLNISPGS------------SCHC---------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~------------~f~~---------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+++.+ +..||.+++|. .++. ..++++|++++. +++++++++|++++++
T Consensus 393 ~~~~L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 393 LVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp HHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred HHHhc-CcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 44443 45799998885 2221 125789999984 8999999999999875
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=238.48 Aligned_cols=346 Identities=12% Similarity=0.079 Sum_probs=213.8
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
+.+.+..++|.. ++.+.+++.+...... . .+ ......|+.......+++...+.+.+.++ +++++|++++
T Consensus 31 ~~~~~~~~~n~~-~~~v~~a~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~~v~~~s 100 (420)
T 3gbx_A 31 EHIELIASENYT-SPRVMQAQGSQLTNKY-A-EG---YPGKRYYGGCEYVDVVEQLAIDRAKELFG----ADYANVQPHS 100 (420)
T ss_dssp HSEECCTTCCCC-CHHHHHHHTSGGGGCC-C------------------CHHHHHHHHHHHHHHHT----CSEEECCCSS
T ss_pred cceeeeccCCCC-CHHHHHHHHHHHhccc-c-cC---CCCccccCchHHHHHHHHHHHHHHHHHhC----CCCceeEecC
Confidence 457787777774 5556666655310000 0 00 01111233333334455444455554444 4666776777
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChH---HHHhhh-CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFD---RDLKWR-TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~---~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
| ++++..++.+++++||+|+++.|+|..+. ...... .+...++++.+ .++.+|++++++++++. ++++
T Consensus 101 G-s~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~ 172 (420)
T 3gbx_A 101 G-SQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEH-----KPKM 172 (420)
T ss_dssp H-HHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHH-----CCSE
T ss_pred c-HHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhc-----CCeE
Confidence 6 78999999999999999999999998743 111122 14556666665 45678999999999763 5899
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
|++++|+||+ ..+ +++|.++|++||+++|+||+|....+........ .....+++.|+||++
T Consensus 173 v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~-------------~~~~di~~~s~sK~~ 234 (420)
T 3gbx_A 173 IIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP-------------VPHAHVVTTTTHKTL 234 (420)
T ss_dssp EEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS-------------TTTSSEEEEESSGGG
T ss_pred EEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcc-------------cccCCEEEeecccCC
Confidence 9999999975 445 7779999999999999999986432322211111 112448889999998
Q ss_pred CCCcceEEEEEecC--HHHHHHHHHhccc---ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 275 GLPGFRVGAIYSND--DMVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 275 g~~GlRiG~li~~~--~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
+ |.+.||+++++ ..+.+.+...... +..+...+.++...+... ..+++++.++++.++++++.+.|.+.|+
T Consensus 235 ~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 310 (420)
T 3gbx_A 235 A--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKNAKAMVEVFLNRGY 310 (420)
T ss_dssp C--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred C--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4 45559999976 3454444432221 123333333333333211 1234577788888899999999998898
Q ss_pred ceecC-CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC-------CCCCCCCCCCeEEEEeec-----CCHHH
Q 043923 350 SCLKS-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP-------GSSCHCTEPGWFRVCFAN-----MSEDT 416 (469)
Q Consensus 350 ~v~~~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p-------g~~f~~~~~~~iRi~~~~-----~~~e~ 416 (469)
++.++ ..++++|+.++.... +. +.+.++++++||.+.| +..|+ +..+|+++.. .++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~~~~~~~~~~~ 381 (420)
T 3gbx_A 311 KVVSGGTENHLFLLDLVDKNL-----TG-KEADAALGRANITVNKNSVPNDPKSPFV---TSGIRIGSPAVTRRGFKEAE 381 (420)
T ss_dssp EEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHTTEECEEECCTTCSSCTTT---CSEEEEECHHHHHTTCCHHH
T ss_pred eeccCCCCCeEEEEEcCCCCC-----CH-HHHHHHHHHCCcEeccccCCCCccccCC---CcceEEecchhcccCCCHHH
Confidence 87653 456788888864211 11 3345556788999998 33332 3459999864 25799
Q ss_pred HHHHHHHHHHHHHhhcc
Q 043923 417 LKLSMQRLKAFVDSITT 433 (469)
Q Consensus 417 i~~~l~~L~~~l~~~~~ 433 (469)
+++++++|++++++..+
T Consensus 382 i~~~~~~l~~~l~~~~~ 398 (420)
T 3gbx_A 382 VKELAGWMCDVLDNIND 398 (420)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhCccc
Confidence 99999999999977543
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=237.79 Aligned_cols=353 Identities=10% Similarity=0.025 Sum_probs=221.4
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccc-cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELA-LFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
...+||++.+ .+++. ++.+.+++.+.. .... .|+...+..++++++++++.+.++ .+.
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~ 111 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQM-------------EELPFYNTFFKTTHPAVVELSSLLAEVTP----AGF 111 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCSCCCTTSSSCCHHHHHHHHHHHHHSC----TTC
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 3468999887 66663 466666665531 1111 233333456777888888877654 467
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--------CCCEEEEccCCCcChHHHHhhhC--------------CCEEEEeecc-CC
Q 043923 112 SKIVLTAGATSANETLMFCLAE--------PGEAFLLPTPYYPGFDRDLKWRT--------------GVEIVPIQCT-SL 168 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~--------~gd~Vl~~~P~y~~~~~~~~~~~--------------g~~~~~v~~~-~~ 168 (469)
++|++++|+++|+..+++++.. +++.|++.+|+|+++...+.... +...+++|.. ..
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKH 191 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHH
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccC
Confidence 8999999999999999999875 57999999999998765544331 2222333320 00
Q ss_pred CCcccC--------HHHHHHHHHHHHhcCCceeEEEEecCC-CCCCC-CCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 169 NGFQIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPS-NPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 169 ~~~~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~-NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+++ .| +++|++.+++.. ..+++ +++++|+ |++|. +++.+.+++|.++|++||+++|+||+|.++..
T Consensus 192 ~~~-~d~~~~~~~~~~~le~~i~~~~--~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 267 (459)
T 4a6r_A 192 GKD-MTPDEFGVVAARWLEEKILEIG--ADKVA-AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGR 267 (459)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred Ccc-cCHHHHHHHHHHHHHHHHHHcC--CCCEE-EEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 112 34 677887776421 11444 4566664 45555 55999999999999999999999999998543
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH---H--hcccccCcHHHHHHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---K--MSSFGLVSSQTQYLLS 313 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~---~--~~~~~~~s~~~q~~~~ 313 (469)
.+..+ . ..... ....++ +|||+++..|+|+||+++++ .+.+.+. . ....+..+++++.++.
T Consensus 268 ~G~~~-~-~~~~~--------~~pdi~---t~sK~l~gg~~~lg~v~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~ 333 (459)
T 4a6r_A 268 TGEWF-G-HQHFG--------FQPDLF---TAAKGLSSGYLPIGAVFVGK-RVAEGLIAGGDFNHGFTYSGHPVCAAVAH 333 (459)
T ss_dssp TSSSS-H-HHHHT--------CCCSEE---EECGGGGTTSSCCEEEEECH-HHHHHHHHHCTTHHHHHHCSCHHHHHHHH
T ss_pred ccccc-h-HhhcC--------CCCCee---ehhhhhcCCCCCccceeeCH-HHHHHhhcCCCcccCCCCCCCHHHHHHHH
Confidence 43321 1 12211 222333 68999984449999999954 4544443 1 1223347888988888
Q ss_pred HHhcCchhhHHHHHHHH-HHHHHHHHHHHHHHHhcC-CceecCCceEEEEEecccccccC-----ChhHHHHHHHHHHHh
Q 043923 314 ALLSDKKFTQNYISENK-KRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYD 386 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~-~~l~~~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~~~~~~-----~~~~~~~l~~~ll~~ 386 (469)
++|+.... ++.+++.+ +.....++.|.+.|.+++ +....+.+ .|+++.+....... ......+++..++ +
T Consensus 334 aal~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 410 (459)
T 4a6r_A 334 ANVAALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVG-MVQAFTLVKNKAKRELFPDFGEIGTLCRDIFF-R 410 (459)
T ss_dssp HHHHHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEET-TEEEEEECSBTTTTBCCSSTTHHHHHHHHHHH-H
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCccccccccchHHHHHHHHHHHH-H
Confidence 88863221 12233333 333344444545555443 33444444 67777765321110 0112345666666 5
Q ss_pred CCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 387 VKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 387 ~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
+||.++|+. +++||+++. .+++++++++++|++++++..++
T Consensus 411 ~Gv~v~~~g-------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 452 (459)
T 4a6r_A 411 NNLIMRACG-------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQT 452 (459)
T ss_dssp TTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999862 689999765 49999999999999999877653
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=242.16 Aligned_cols=347 Identities=13% Similarity=0.065 Sum_probs=209.3
Q ss_pred CCCeeeeeccc--cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+. +++. ++.+.+++.+.... .....|+ .....+|++++++++. .++
T Consensus 54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~-----------~~~~~~~-~~~~~~l~~~la~~~~---------~~~ 112 (434)
T 3l44_A 54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAEN-----------GVLYGTP-TALEVKFAKMLKEAMP---------ALD 112 (434)
T ss_dssp CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHH-----------CSCCSSC-CHHHHHHHHHHHHHCT---------TCS
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHh-----------CcCCCCC-CHHHHHHHHHHHHhCC---------CCC
Confidence 45689998775 5553 56666666653110 0112243 3345667777776652 478
Q ss_pred cEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcc------------cCHHHH
Q 043923 113 KIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQ------------ITETAI 178 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l 178 (469)
+|++++|+++|+..++..+.. +++.|++.+|+|+++...+....|.....+......++. .|++++
T Consensus 113 ~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 192 (434)
T 3l44_A 113 KVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETL 192 (434)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHH
T ss_pred EEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHH
Confidence 999999999999999988754 678999999999887654433323322211111111110 178999
Q ss_pred HHHHHHHHhcCCceeEEEEecC-CCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccc
Q 043923 179 EEAYQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 256 (469)
Q Consensus 179 ~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~ 256 (469)
++++++.. .++++ ++++| +|++|.+. +.+.+++|.++|++||+++|+||+|.++ ..+.. ...+...
T Consensus 193 e~~l~~~~---~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~--~~~~~~~----- 260 (434)
T 3l44_A 193 KEALDKWG---HEVAA-ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYG--GAQDLLG----- 260 (434)
T ss_dssp HHHHHHHG---GGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSS--CHHHHHT-----
T ss_pred HHHHHhCC---CCEEE-EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecccc--HHHHHcC-----
Confidence 99887531 24554 55556 45566655 8899999999999999999999999986 33321 1122211
Q ss_pred cCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-----hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHH
Q 043923 257 NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKK 331 (469)
Q Consensus 257 ~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 331 (469)
.... +.|+||++| +|+|+||++++ +.+.+.+.. ....+..+++++.++.++|+.... .+.+++.++
T Consensus 261 ---~~~d---i~t~sK~~~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~ 331 (434)
T 3l44_A 261 ---VTPD---LTALGKVIG-GGLPIGAYGGK-KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDE 331 (434)
T ss_dssp ---CCCS---EEEEEGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred ---CCCC---eeehhhhhc-CCcCeeeEEEc-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHH
Confidence 1122 348999998 89999999885 444444433 112234678888887777653211 112233333
Q ss_pred HHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc-------CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCe
Q 043923 332 RLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404 (469)
Q Consensus 332 ~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~-------~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~ 404 (469)
.....++.|.+.+.++++....+..|.|+++.+...... .......+++..++ ++||.++|+. .++
T Consensus 332 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~ 404 (434)
T 3l44_A 332 LGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML-QEGVNLAPSK------YEA 404 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH-HTTEECCSST------TCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH-HCCeEEeecC------CCc
Confidence 223333334444444454333333446777776421100 01122235566665 5699999874 246
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 405 FRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 405 iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+|+++. .+++++++++++|++++++.++
T Consensus 405 ~rl~~~-~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 405 WFLTTE-HTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp EECCTT-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecc-cCHHHHHHHHHHHHHHHHHHHh
Confidence 888765 5999999999999999987654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=241.15 Aligned_cols=283 Identities=15% Similarity=0.156 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCCh-HHHHHHHHHHhcCC---CCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGA-TSANETLMFCLAEP---GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~-~~al~~~~~~l~~~---gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
.++++.++++++ +. ++++|++|+|+ ++|+..++.+++.+ ||.|+++.++|..+ ..+... | +++.++
T Consensus 51 ~~l~~~la~~~g------~~-~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~-g-~~~~v~ 120 (360)
T 1w23_A 51 EQAQNLLRELLQ------IP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLL-G-ETHIAA 120 (360)
T ss_dssp HHHHHHHHHHHT------CC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTT-S-EEEEEE
T ss_pred HHHHHHHHHHhC------CC-CCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHh-C-CeEEee
Confidence 455555555554 21 35799999999 99999999998765 56777777776543 334555 9 999999
Q ss_pred ccCCCCcccCHHHHHH-HHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 165 CTSLNGFQITETAIEE-AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~-~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+++++++ +|++++++ ++++ ++++|++++|+||||.+++ ++. ++||++||+||+|+.+ ...
T Consensus 121 ~~~~~~~-~d~~~l~~~~i~~------~~k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~---~~~- 181 (360)
T 1w23_A 121 STKANSY-QSIPDFSEFQLNE------NDAYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDIL---SRP- 181 (360)
T ss_dssp ECGGGTS-CSCCCGGGCCCCT------TEEEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTT---SSC-
T ss_pred cccccCc-CCccchHhhccCC------CCCEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcC---CCC-
Confidence 8753333 67788877 6643 7999999999999999987 322 2799999999999852 111
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--------------ccccCcHHHH
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--------------SFGLVSSQTQ 309 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--------------~~~~~s~~~q 309 (469)
.+ + . .. .++++|+||.||++| +||++++++.+ +.+.... .+++.+...+
T Consensus 182 ~~---~-~--------~~--di~~~s~sK~~~~~G--~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (360)
T 1w23_A 182 LK---V-N--------QF--GMIYAGAQKNLGPSG--VTVVIVKKDLL-NTKVEQVPTMLQYATHIKSDSLYNTPPTFSI 244 (360)
T ss_dssp CC---G-G--------GC--SEEEEETTTTTSCTT--CEEEEEEHHHH-CSCCTTCCGGGCHHHHHHTTTCSSCCCHHHH
T ss_pred cC---c-c--------cC--CEEEEEcccccCCCC--cEEEEEcHHHH-hhcccCCcchhhhhhhhhccCCCCCCCHHHH
Confidence 12 1 1 11 378899999999666 89999965543 2222111 1133455666
Q ss_pred HHHHHHhcCchhhHH-HHHHHHHHHHHHHHHHHHHHHhcC-C-cee--cC-CceEEEEEecccccccCChhHHHHHHHHH
Q 043923 310 YLLSALLSDKKFTQN-YISENKKRLKQRHRKLVSGLEKAG-I-SCL--KS-NAGLFCWVDMRHLLRSNTFEAEMELWKKI 383 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~g-~-~v~--~~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~l 383 (469)
.++.+++.... .. ++++.+++++++++++.+.|++++ + .+. +. .+++++|+.++.. .+..++.+.+
T Consensus 245 ~~~~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l 316 (360)
T 1w23_A 245 YMLRNVLDWIK--DLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFLAKA 316 (360)
T ss_dssp HHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCC------ccHHHHHHHH
Confidence 66655554211 11 467788889999999999999875 5 543 22 3456899998742 1233556664
Q ss_pred HHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 384 VYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 384 l~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.++||.+.||..+ ++++||+++. .+++++++++++|++++++
T Consensus 317 -~~~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 317 -KEQGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp -HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -HHCCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 5679999998754 5689999985 3899999999999998753
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=245.71 Aligned_cols=312 Identities=11% Similarity=0.083 Sum_probs=226.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-----CC---CEEEEccCCCcChHHHH
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE-----PG---EAFLLPTPYYPGFDRDL 152 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-----~g---d~Vl~~~P~y~~~~~~~ 152 (469)
.|....|..++++++++++.+.+| .+.+++++++++|+++++..++.++++ +| |.|+++.|+|..+...+
T Consensus 98 ~~~~~~~~~~l~~~~~~~la~~~g--~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~ 175 (497)
T 3mc6_A 98 HPDVFPAVRKMESEVVSMVLRMFN--APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAA 175 (497)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT--CCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHHHHhC--CCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHH
Confidence 344555678999999999988877 223478999999999999999999864 45 89999999999999988
Q ss_pred hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecc
Q 043923 153 KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEI 232 (469)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Dea 232 (469)
... |++++.+|++. +++.+|+++|++++++ ++++|++++|+||||.+.+.+ +|.++|++||+++|+|++
T Consensus 176 ~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~l~---~i~~la~~~g~~livD~a 244 (497)
T 3mc6_A 176 YYF-GMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADDIE---GLGKIAQKYKLPLHVDSC 244 (497)
T ss_dssp HHS-CCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCSCT---TTTTHHHHTTCCEEEETT
T ss_pred HHc-CCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCCHH---HHHHHHHHhCCEEEEECc
Confidence 887 99999999874 3678999999998864 789999999999999998855 588889999999999999
Q ss_pred ccccccC--C---CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc-----
Q 043923 233 YSGTVFS--S---PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG----- 302 (469)
Q Consensus 233 y~~~~~~--~---~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~----- 302 (469)
|+++... . ....+.... ...+..+++.|++|.++ +|.++|+++++++.+..........+
T Consensus 245 ~~~~~~~f~~~~~~~~~~~~~~---------~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (497)
T 3mc6_A 245 LGSFIVSFMEKAGYKNLPLLDF---------RVPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGLY 314 (497)
T ss_dssp TTHHHHGGGTTTTCCSCCCCST---------TSTTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSCB
T ss_pred chhhhhhhhhhhcccCCccccc---------cCCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCCc
Confidence 9865321 1 000100111 02345678889999874 88899999997766543211111110
Q ss_pred -c------Cc---HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCceecCCceEEEEEeccccccc
Q 043923 303 -L------VS---SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLRS 370 (469)
Q Consensus 303 -~------~s---~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~v~~~~~g~~~~v~~~~~~~~ 370 (469)
. .+ ..++.++...+.. ..+++..+++.++.+++.+.|++. |+++..+..+.++++..+.
T Consensus 315 ~~~~~~g~~~~~~~~a~~aal~~l~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~---- 385 (497)
T 3mc6_A 315 GSPTLAGSRPGAIVVGCWATMVNMGE-----NGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKT---- 385 (497)
T ss_dssp CCSSSCSSCBHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTT----
T ss_pred CCcCcccCCcchhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCC----
Confidence 0 01 3335555555433 234666777788889999999994 8888744444455555442
Q ss_pred CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 371 ~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+..++.+.|. ++||.+.++.. +..+|++++..+++++++++++|++++++..+
T Consensus 386 ---~~~~~l~~~L~-~~Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 386 ---LNIHELSDRLS-KKGWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp ---TTHHHHHHHHH-TTTCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred ---CCHHHHHHHHH-hCCEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 12335666665 66999886643 34689999866999999999999999988765
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=241.47 Aligned_cols=344 Identities=15% Similarity=0.131 Sum_probs=229.2
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC----cE
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS----KI 114 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~----~i 114 (469)
+.|+|..++|+.+ +.+.+++.+..... -.++ ......|....+.+++++++.+++.+.+| ++++ +|
T Consensus 45 ~~i~L~a~e~~~~-~~V~eA~~~~l~~~--~~~g---~p~~~~y~~~~~~~~le~~~~~~~a~~~g----~~~~~~~~~V 114 (483)
T 1rv3_A 45 VGLELIASENFAS-RAVLEALGSCLNNK--YSLG---YPGQRYYGGTEHIDELETLCQKRALQAYG----LDPQCWGVNV 114 (483)
T ss_dssp SSEECCTTCCCCC-HHHHHHHTSGGGTC--CCCE---ETTEESSSCCHHHHHHHHHHHHHHHHHTT----CCTTTEEEEC
T ss_pred cCeEEEcCCCCCC-HHHHHHHHHHHhcc--Cccc---CCCccccCcchhHHHHHHHHHHHHHHHhC----CCcccCceEE
Confidence 5799998888754 44555555421100 0000 01112244444557888888888887776 4443 48
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH--------HhhhCC--CEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD--------LKWRTG--VEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~--------~~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
++++|+ +++..++.++++|||+|++++|.|.++... +... | .+++++++++ .++.+|++++++++++
T Consensus 115 ~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~-G~~~~~v~~~~~~-~~~~iD~d~le~~i~~ 191 (483)
T 1rv3_A 115 QPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISAT-SIFFESMAYKVNP-DTGYIDYDRLEENARL 191 (483)
T ss_dssp CCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHH-HHHSEEEEECBCT-TTCSBCHHHHHHHHHH
T ss_pred EECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccc-cceEEEEECcccc-CCCcCCHHHHHHHHhh
Confidence 888888 889888899999999999999998877532 2233 4 5566665553 3578999999999973
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc-ccccCCCCccchhhhhhccccccCCcCCe
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTQVWNR 263 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (469)
. ++++|++ +++||+ .+++ +++|.++|+++|+++|+|++|. ++.+.+.. .+.. + ..
T Consensus 192 ~-----~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~-~~p~---~----------~~ 247 (483)
T 1rv3_A 192 F-----HPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVV-PSPF---E----------HC 247 (483)
T ss_dssp H-----CCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS-CCGG---G----------TC
T ss_pred c-----CCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCC-CCCC---C----------CC
Confidence 2 8899888 899988 7777 5668889999999999999986 33232221 1111 1 23
Q ss_pred EEEEccCccccCCCcceEEEEEecCH--------------HHHHHHHHhc-c--cccCcHHHHHHHHHHhcCchhhHHHH
Q 043923 264 VHIVYSLSKDLGLPGFRVGAIYSNDD--------------MVVAAATKMS-S--FGLVSSQTQYLLSALLSDKKFTQNYI 326 (469)
Q Consensus 264 ~i~i~S~SK~~g~~GlRiG~li~~~~--------------~~~~~~~~~~-~--~~~~s~~~q~~~~~~l~~~~~~~~~~ 326 (469)
.+++.|+||++ +|+|.||+++++. .+...+.... . .++.+.....++..++.... ...+
T Consensus 248 div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~--~~~~ 323 (483)
T 1rv3_A 248 HVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM--TPEF 323 (483)
T ss_dssp SEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT--SHHH
T ss_pred cEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh--ChhH
Confidence 47789999987 6788899999764 1223222211 1 12233333444444443211 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCC
Q 043923 327 SENKKRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTE 401 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~~g~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~ 401 (469)
++.++++.++++++.+.|.+.|+++..+. .++++|++++... .+..+ +.++|++.||.+. ||..+ ...
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g-----~~~~~-~~~~L~~~gI~v~~~~~pg~~~-~~~ 396 (483)
T 1rv3_A 324 KEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKG-----TDGGR-AEKVLEACSIACNKNTCPGDKS-ALR 396 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGT-----CCHHH-HHHHHHHTTEECEEECCSSCSC-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCC-----CCHHH-HHHHHHhCCcEEecCCCCCCCc-CCC
Confidence 67788888899999999999899887653 3467888886321 01123 3455678899999 88742 224
Q ss_pred CCeEEEEeecC-C----HHHHHHHHHHHHHHHHh
Q 043923 402 PGWFRVCFANM-S----EDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 402 ~~~iRi~~~~~-~----~e~i~~~l~~L~~~l~~ 430 (469)
++++||+++.. + ++++++++++|+++++.
T Consensus 397 ~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 397 PSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 67899999753 4 89999999999999876
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=237.36 Aligned_cols=354 Identities=10% Similarity=0.021 Sum_probs=215.2
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+ .+++. ++.+.+++.+.. .....|....+..+++.++++++.+.++. ...+
T Consensus 60 g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~~~ 123 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQV-------------GDFTHTCFMVTPYEGYVAVCEQLNRLTPV---RGDK 123 (451)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHH-------------TTCSCCTTTTSCCHHHHHHHHHHHHHSSC---CSSE
T ss_pred CCEEEEcCCCccccccCCCCHHHHHHHHHHH-------------HhcccccCCccCCHHHHHHHHHHHHhCCc---CCCC
Confidence 3468999987 56663 466666665531 22233444345567777888887766431 1357
Q ss_pred cEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCC-------------CEEEEeeccCC--C---Cc-
Q 043923 113 KIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTG-------------VEIVPIQCTSL--N---GF- 171 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~~--~---~~- 171 (469)
+|++|+|+++|+..+++.+.. .++.|++..|+|+++...+....+ ..+..+|.+.. + +.
T Consensus 124 ~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 203 (451)
T 3oks_A 124 RSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKE 203 (451)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTT
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccc
Confidence 899999999999999987653 458999999999887654433211 13444554310 0 00
Q ss_pred --c---cCHHHHHHHHHHHHhcCCceeEEEEecCCCCCC--CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 172 --Q---ITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG--TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 172 --~---~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG--~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
. .+++.+++.+++.. +++..++|+++|.|++| ...+.+.+++|.++|++||+++|+||+|.++...+.. .
T Consensus 204 ~~~~~~~~~~~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~ 280 (451)
T 3oks_A 204 LATDGELAAKRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM-F 280 (451)
T ss_dssp TTTCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-S
T ss_pred cchhhHHHHHHHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc-h
Confidence 0 12344444444321 12344567777877665 3457777999999999999999999999975443331 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhh
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~ 322 (469)
. .+... ....++ ||||++| +|+|+||++++ +.+.+.+... ...+..+++++.++.++|+....
T Consensus 281 ~-~~~~~--------~~pdi~---t~sK~l~-~G~~iG~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~- 345 (451)
T 3oks_A 281 A-CEHEG--------IDPDLI---VTAKGIA-GGLPLSAVTGR-AEIMDSPHVSGLGGTYGGNPIACAAALATIETIES- 345 (451)
T ss_dssp G-GGGGT--------CCCSEE---EECGGGG-TTSSCEEEEEE-HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-
T ss_pred h-hhhcC--------CCCCee---eehhhhh-CCcceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-
Confidence 1 11111 112222 8999998 69999999995 4444433322 22234788888888888763211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-ceecCCceEEEEEecccccc-cCChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKAGI-SCLKSNAGLFCWVDMRHLLR-SNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~g~-~v~~~~~g~~~~v~~~~~~~-~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
.+.+++.++.....++.|.+.+.+++. ....+. |.|+|+.+..... ........+++..++ ++||.+.|+..|
T Consensus 346 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--- 420 (451)
T 3oks_A 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGR-GAMIAMELVKAGTTEPDADLTKALCAGAH-AAGVIVLSCGTY--- 420 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEBSTTSCCBCHHHHHHHHHHHH-HTTEECEEECTT---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEe-eEEEEEEEecCccCCCCHHHHHHHHHHHH-hCCcEEecCCCC---
Confidence 112333333333333444444444432 233333 5688887743100 011123345666655 669999998655
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 401 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 401 ~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+++|++++. .+++++++++++|++++++
T Consensus 421 -~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 421 -GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp -SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 3589999876 4999999999999999864
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=236.30 Aligned_cols=287 Identities=14% Similarity=0.106 Sum_probs=200.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCC-c-EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTS-K-IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~-~-i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~v 163 (469)
..++++++.+.+.+.+| ++++ + +++|+|+++++..++.+++++||.|++..+.+... ...++.. | +++.+
T Consensus 47 ~~~~~~~~~~~la~~~g----~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g-~~~~v 120 (362)
T 2c0r_A 47 YEAVHNEAQARLLALLG----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-G-DTHVA 120 (362)
T ss_dssp HHHHHHHHHHHHHHHTT----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-S-CEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHh-C-CeEEE
Confidence 35566777777766655 4453 5 56889999999999999999999999887764432 3455566 9 99999
Q ss_pred eccCC--CCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 164 QCTSL--NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 164 ~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
+.+.+ .++.+|.++++ ++ +++++|++++|+||||.+++ +++++ +|+++|+|++|+.. ..
T Consensus 121 ~~~~~~~~~~~~~~~~~~--i~------~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~---~~ 181 (362)
T 2c0r_A 121 ASSEASNYMTLPKLQEIQ--LQ------DNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDIL---SR 181 (362)
T ss_dssp EECGGGTTCSCCCGGGCC--CC------TTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTT---SS
T ss_pred ecccccccccCCCHHHcc--cC------CCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhcc---CC
Confidence 87632 23334655543 33 38999999999999999754 23334 79999999999842 22
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--------------hcccccCcHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--------------MSSFGLVSSQ 307 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--------------~~~~~~~s~~ 307 (469)
+ .+ + . . ..+++.|+||++|++| +||++++++.+.. +.. ....++++.+
T Consensus 182 ~-~~---~-~--------~--~d~~~~s~~K~~g~~G--~G~l~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~ 243 (362)
T 2c0r_A 182 P-FD---L-N--------Q--FGLVYAGAQKNLGPSG--VTVVIVREDLVAE-SPKHLPTMLRYDTYVKNNSLYNTPPSF 243 (362)
T ss_dssp C-CC---G-G--------G--CSEEEEETTTTTCCSS--CEEEEEEGGGSSS-CCTTSCGGGCHHHHHHTTTCSSCCCHH
T ss_pred c-cc---h-h--------H--CcEEEEeccccccCcC--cEEEEEcHHHHhh-ccccCchHHhHHHHhhccCcCCCchHH
Confidence 1 12 1 1 1 2477789999999888 9999996554321 111 0123456777
Q ss_pred HHHHHHHHhcCchhhHH--HHHHHHHHHHHHHHHHHHHHHhcC-C-ceecC---CceEEEEEecccccccCChhHHHHHH
Q 043923 308 TQYLLSALLSDKKFTQN--YISENKKRLKQRHRKLVSGLEKAG-I-SCLKS---NAGLFCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 308 ~q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~g-~-~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
.+.++.++|+.. .+ .++..+++++++++++.+.|++++ + ++..+ .++.++++.++.. .+..+++
T Consensus 244 ~~~a~~~al~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 314 (362)
T 2c0r_A 244 GIYMVNEVLKWI---EERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE------ELEKEFV 314 (362)
T ss_dssp HHHHHHHHHHHH---HHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCH------HHHHHHH
T ss_pred HHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCc------chHHHHH
Confidence 888887777532 22 467888899999999999999987 6 66421 2345678888642 1233566
Q ss_pred HHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.| .++||.+.||..| .+++|+|++. .+++++++++++|+++++++
T Consensus 315 ~~L-~~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 315 KAS-EQEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp HHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 654 5679999988765 3579999985 38999999999999988753
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-26 Score=228.12 Aligned_cols=287 Identities=17% Similarity=0.158 Sum_probs=199.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhC
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRT 156 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~ 156 (469)
.|+. .+..+|++++|++++ . .+.|++++| ++|+..++.++.++||.|+++.|+|.+.... +...
T Consensus 48 ~~~~-~~~~~l~~~la~~~~--------~-~~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~- 115 (386)
T 1cs1_A 48 RRGN-PTRDVVQRALAELEG--------G-AGAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG- 115 (386)
T ss_dssp TTCC-HHHHHHHHHHHHHHT--------C-SEEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTT-
T ss_pred CCCC-ccHHHHHHHHHHHhC--------C-CcEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhc-
Confidence 4443 467899999999986 2 266777666 8999999999999999999999999875443 2445
Q ss_pred CCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc
Q 043923 157 GVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT 236 (469)
Q Consensus 157 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~ 236 (469)
|++++.++.+ |++++++++++ ++++|++++|+||||.+++ +++|.++|++||+++|+||+|..+
T Consensus 116 g~~~~~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 116 CYRVLFVDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp SCEEEEECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred CCEEEEeCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 9999988853 78999998875 7899999999999999997 566889999999999999999865
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhccc--ccCcHHHHHHHH
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLS 313 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~ 313 (469)
.+.. . .. .+.++++.|+||++|.+|.|+ ||++++++.+.+.+...... ...+++.++++.
T Consensus 180 ~~~~----~-~~------------~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 242 (386)
T 1cs1_A 180 ALQN----P-LA------------LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 242 (386)
T ss_dssp TTCC----G-GG------------GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred ccCC----c-cc------------cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3321 1 11 156788999999999899997 99999764554444433222 235667766665
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-eecC----------------CceEEEEEecccccccCChhH
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-IS-CLKS----------------NAGLFCWVDMRHLLRSNTFEA 375 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~-v~~~----------------~~g~~~~v~~~~~~~~~~~~~ 375 (469)
..++. +....+.+.++.+.+.+.|+++. +. +..+ ..|.++.+.+++.
T Consensus 243 ~~l~~-------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 307 (386)
T 1cs1_A 243 RGLRT-------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-------- 307 (386)
T ss_dssp HHHTT-------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC--------
T ss_pred hcccH-------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC--------
Confidence 55542 33445556667777777777652 21 1111 1245666666531
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCC-------------------------CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 376 EMELWKKIVYDVKLNISPGSSCH-------------------------CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 376 ~~~l~~~ll~~~GI~v~pg~~f~-------------------------~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
. +.+...+.+.||.+++++ |+ ...++++|++++. +++++.+++|.+++++
T Consensus 308 ~-~~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 308 E-QTLRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRA 382 (386)
T ss_dssp H-HHHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHH
Confidence 1 234445667899887432 11 0125799999985 4556666666666665
Q ss_pred hc
Q 043923 431 IT 432 (469)
Q Consensus 431 ~~ 432 (469)
..
T Consensus 383 ~~ 384 (386)
T 1cs1_A 383 AN 384 (386)
T ss_dssp HT
T ss_pred hh
Confidence 43
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=239.23 Aligned_cols=350 Identities=11% Similarity=0.061 Sum_probs=210.0
Q ss_pred CCCeeeeecc--cccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+ .+.+ .++.+.+++.+.. .....|....+..+++.++++++.+.++ ...+
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~ 105 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQL-------------GKIAHSTLLGMTNVPATQLAETLIDISP----KKLT 105 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHHHH-------------TTCSCCCCSSSEEHHHHHHHHHHHHHSC----TTEE
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCC----CCCC
Confidence 3468999876 4444 3466666666531 1122233334556778888888877654 3568
Q ss_pred cEEEeCChHHHHHHHHHHhcC----C----CCEEEEccCCCcChHHHHhhhCCC------------EEEEeeccCCCCcc
Q 043923 113 KIVLTAGATSANETLMFCLAE----P----GEAFLLPTPYYPGFDRDLKWRTGV------------EIVPIQCTSLNGFQ 172 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~----~----gd~Vl~~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~~ 172 (469)
+|++++|+++|+..++.++.. + +|.|++.+|+|+++........|. .+..+|.+ ..|.
T Consensus 106 ~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 183 (448)
T 3dod_A 106 RVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYR 183 (448)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTT
T ss_pred EEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--cccc
Confidence 999999999999999998865 4 499999999998775443322121 12333332 2222
Q ss_pred c-----------CHHHHHHHHHHHHhcCCceeEEEEecCC-CCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 173 I-----------TETAIEEAYQLAQKRHLKVKGVLVTNPS-NPLG-TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 173 ~-----------d~~~l~~~i~~~~~~~~~~~~vvl~~P~-NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
. |+++|+++++.. ..++++|++..++ |++| .+.+.+.+++|.++|++||+++|+||+|.++...
T Consensus 184 ~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~ 260 (448)
T 3dod_A 184 SESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRT 260 (448)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred CCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Confidence 2 378888888732 1256665555555 7888 4568888999999999999999999999985443
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH-------h--cccccCcHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-------M--SSFGLVSSQTQ 309 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~-------~--~~~~~~s~~~q 309 (469)
+..+ . ..... .... +.+|||+++ +| +|+||+++++ .+.+.+.. . ...+..+++++
T Consensus 261 g~~~-a-~~~~~--------~~~d---i~t~sK~l~-~G~~~ig~v~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 325 (448)
T 3dod_A 261 GKMF-A-CEHEN--------VQPD---LMAAGKGIT-GGYLPIAVTFATE-DIYKAFYDDYENLKTFFHGHSYTGNQLGC 325 (448)
T ss_dssp SSSS-G-GGGGT--------CCCS---EEEECGGGG-TTSSCCEEEEEEH-HHHHTTCSCGGGCCCCCCCCTTTTCHHHH
T ss_pred cchh-h-hhhcC--------CCCC---EEEeccccc-CCcCceEEEEECH-HHHHHhhhccccCCcccccCCCCcCHHHH
Confidence 3321 1 11111 1122 337899998 69 5999999954 45444433 1 12234678888
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCC-h----hHHHHHHHHHH
Q 043923 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNT-F----EAEMELWKKIV 384 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~-~----~~~~~l~~~ll 384 (469)
.++.++|+.... .+.++..++..+..++.|.+ +.+++........|.|+|+.++....... . ....+++..++
T Consensus 326 aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 403 (448)
T 3dod_A 326 AVALENLALFES-ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMR 403 (448)
T ss_dssp HHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHH
Confidence 888888763221 11233333333334444444 44443222222235788888865321100 0 01235666666
Q ss_pred HhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 385 YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++||.+.|+ .+++|++++. .+++++++++++|++++++..+
T Consensus 404 -~~Gv~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 404 -ELGMLTRPL-------GDVIAFLPPLASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp -HTTEECCEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -HCCcEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 559999986 2689997764 4999999999999999987643
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=230.92 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=203.5
Q ss_pred cHHHHH----HHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH---HhhhCC--C
Q 043923 88 LPAFKK----ALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD---LKWRTG--V 158 (469)
Q Consensus 88 ~~~Lr~----aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~---~~~~~g--~ 158 (469)
..++++ .++++++ .+++.|++++| ++++..++.+++++||.|+++.|+|..+... +... | .
T Consensus 67 ~~~l~~~~r~~la~~~g--------~~~~~i~~~sG-t~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~ 136 (405)
T 2vi8_A 67 VDIVEELARERAKQLFG--------AEHANVQPHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQY 136 (405)
T ss_dssp HHHHHHHHHHHHHHHHT--------CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHH-HHHS
T ss_pred HHHHHHHHHHHHHHHhC--------CCceEEEecCc-HHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhc-ccee
Confidence 445654 5555553 34445556666 9999999999999999999999999887531 1233 4 4
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
+++.+++++ .++.+|++++++++++. ++++|++ +|+|+ |...+ +++|.++|++||+++|+||+|+....
T Consensus 137 ~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~ 205 (405)
T 2vi8_A 137 NFVAYGVDP-ETHVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLV 205 (405)
T ss_dssp EEEEECBCT-TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHH
T ss_pred EEEeccccc-ccCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEcccccccc
Confidence 788887753 35778999999998753 5777665 56554 44444 67799999999999999999984322
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhc-cc--ccCcHHHHHHHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMS-SF--GLVSSQTQYLLSA 314 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~-~~--~~~s~~~q~~~~~ 314 (469)
....... .+ . ...++++|+||+++ .+| ||++++ +.+.+.+.... .+ +..+.....++.+
T Consensus 206 ~~~~~~~--~~-~----------~~di~~~s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~ 268 (405)
T 2vi8_A 206 AAGLHPN--PV-P----------YAHFVTTTTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAV 268 (405)
T ss_dssp HTTSSCC--ST-T----------TCSEEEEESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHH
T ss_pred ccCcCCC--cc-c----------cCCEEEEeccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHH
Confidence 2211111 11 1 12378899999997 566 999996 44544444432 22 2123333344444
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC-CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeC
Q 043923 315 LLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP 393 (469)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p 393 (469)
++.... ..++++.+++++++++++.+.|+++|+++..+ ..++++|+.++... .+..++.+.+ .++||.+.+
T Consensus 269 al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~v~~ 340 (405)
T 2vi8_A 269 AFGEAL--QDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ-----LTGKTAEKVL-DEVGITVNK 340 (405)
T ss_dssp HHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT-----CCHHHHHHHH-HHHTEECEE
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCC-----CCHHHHHHHH-HHcCceecc
Confidence 554211 23567788889999999999999989888765 45789999987421 1122455554 567999999
Q ss_pred CCC----CCCCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHHhhc
Q 043923 394 GSS----CHCTEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 394 g~~----f~~~~~~~iRi~~~~-----~~~e~i~~~l~~L~~~l~~~~ 432 (469)
|.. ++...++++|++++. ++++++++++++|++++++.+
T Consensus 341 g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 341 NTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp ECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 863 333345789999984 579999999999999987553
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=236.48 Aligned_cols=341 Identities=14% Similarity=0.097 Sum_probs=217.8
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCC---CCCcHHHH--HHHH-HHHHhHcCCCCCCCCC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD---YHGLPAFK--KALV-EFMSEIRGNKVTFDTS 112 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~Lr--~aia-~~l~~~~~~~~~~~~~ 112 (469)
+.|+|..++|+. ++.+.+++.+.... .....|+. ..|...++ ++++ +++.+.++ .+
T Consensus 46 ~~i~l~~~~~~~-~~~v~~a~~~~~~~-----------~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g----~~-- 107 (447)
T 3h7f_A 46 DTLEMIASENFV-PRAVLQAQGSVLTN-----------KYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG----AE-- 107 (447)
T ss_dssp HSEECCTTCCCC-CHHHHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CS--
T ss_pred CceeEecCCCCC-CHHHHHHHHHHhcC-----------CccccCCcccccCccHHHHHHHHHHHHHHHHHcC----CC--
Confidence 569998888887 44455555442100 00011221 12334443 5555 66665544 23
Q ss_pred cEEE-eCChHHHHHHHHHHhcCCCCEEEEccCCCcChH-HH--Hhhh-CCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 113 KIVL-TAGATSANETLMFCLAEPGEAFLLPTPYYPGFD-RD--LKWR-TGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 113 ~i~~-t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~-~~--~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
.+.+ ++|+++|+..++.+++++||+|+++.|+|..+. .. .... .+..+++++++. .++.+|++++++++++.
T Consensus 108 ~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-- 184 (447)
T 3h7f_A 108 FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-ATHLIDMDAVRATALEF-- 184 (447)
T ss_dssp EEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHH--
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhc--
Confidence 2344 778889999999999999999999999997732 11 1111 155677777764 34679999999998653
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc-ccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
++++|++++|+||++. ++++|.++|++||+++|+||+|. ++.+.+.. .+.. + ...++
T Consensus 185 ---~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~-~~~~---~----------~~di~ 242 (447)
T 3h7f_A 185 ---RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLH-PSPV---P----------HADVV 242 (447)
T ss_dssp ---CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSS-CCST---T----------TCSEE
T ss_pred ---CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCC-CCCC---C----------CCcEE
Confidence 6788899899999987 47789999999999999999974 33333321 1211 1 22377
Q ss_pred EccCccccCCCcceEEEEEecCHHHHHHHHHh-ccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSG 343 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 343 (469)
+.|+||++ +|+|.||+++++.. .+.+... ..+ ++.....+.++..++.... ..+++..++++.++++++.+.
T Consensus 243 ~~s~sK~l--~G~~gG~i~~~~~~-~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~ 317 (447)
T 3h7f_A 243 STTVHKTL--GGGRSGLIVGKQQY-AKAINSAVFPGQQGGPLMHVIAGKAVALKIAA--TPEFADRQRRTLSGARIIADR 317 (447)
T ss_dssp EEESSGGG--CCCSCEEEEECGGG-HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcCC--CCCCeEEEEECHHH-HHHHhhhcCCcccCCccHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHH
Confidence 89999987 47899999996544 3333332 222 2222333333333332211 223567778888889999999
Q ss_pred HHhc-----CCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCCCCeEEEEeec--
Q 043923 344 LEKA-----GISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN-- 411 (469)
Q Consensus 344 L~~~-----g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~~~~iRi~~~~-- 411 (469)
|.+. |+++.. +..++++|+++..... ..+.+..+++++||.+. |+..+.+..++++|+++..
T Consensus 318 L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~ 391 (447)
T 3h7f_A 318 LMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPL------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALA 391 (447)
T ss_dssp HTSHHHHHTTCEEGGGSCSSSEEEEECTTSSC------CHHHHHHHHHHTTEECBC-------------CEEEEECHHHH
T ss_pred HHhccccCCCeEEecCCCCCCEEEEEcCCCCC------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHh
Confidence 9887 888764 3456788888863210 11345667778899998 6643344456789998743
Q ss_pred ---CCHHHHHHHHHHHHHHHHhhcc
Q 043923 412 ---MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 412 ---~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+++++++++++.|++++++..+
T Consensus 392 ~~~~~~eei~~~~~~l~~~l~~~~~ 416 (447)
T 3h7f_A 392 TRGFGDTEFTEVADIIATALATGSS 416 (447)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHSGGG
T ss_pred hCCCCHHHHHHHHHHHHHHHhccCc
Confidence 4789999999999999987644
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=234.87 Aligned_cols=344 Identities=10% Similarity=0.055 Sum_probs=216.9
Q ss_pred CCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCC-CCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 38 TGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDY-HGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 38 ~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
..+||++.+. +.+ +++.+.+++.+.... .. +... .+..++++++++.+.+.++ .+++
T Consensus 50 ~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~-------------~~-~~~~~~~~~~~~~~l~~~la~~~~----~~~~ 111 (449)
T 3a8u_X 50 RKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST-------------LD-YSPGFQYGHPLSFQLAEKITDLTP----GNLN 111 (449)
T ss_dssp CEEEETTHHHHTCTTCBSCHHHHHHHHHHTTT-------------CS-CCCSSSCCCHHHHHHHHHHHTTSS----TTEE
T ss_pred CEEEECCccHhhccCCCCCHHHHHHHHHHHHh-------------CC-CccccccCCHHHHHHHHHHHHhCC----CCCC
Confidence 4578987665 444 346666666653211 11 1111 2334555666666655433 4678
Q ss_pred cEEEeCChHHHHHHHHHHhcC--------CCCEEEEccCCCcChHH-HHhhh-------------CCCEEEEeeccCCCC
Q 043923 113 KIVLTAGATSANETLMFCLAE--------PGEAFLLPTPYYPGFDR-DLKWR-------------TGVEIVPIQCTSLNG 170 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~--------~gd~Vl~~~P~y~~~~~-~~~~~-------------~g~~~~~v~~~~~~~ 170 (469)
+|++|+|+++|+..++.++.. +||.|++.+|+|+++.. .+... .|+..+++|......
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~ 191 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNA 191 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGT
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCc
Confidence 999999999999999988753 67999999999987643 33322 023444444211111
Q ss_pred c-ccC--------HHHHHHHHHHHHhcCCceeEEEEecCC-CCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 171 F-QIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPS-NPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 171 ~-~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~-NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
| .+| ++++++++++.. ..++++ ++++|+ ||||. +.+.+.+++|.++|++||+++|+||+|.++...
T Consensus 192 ~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~ 268 (449)
T 3a8u_X 192 YSRGMPKEGGIALADELLKLIELHD--ASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT 268 (449)
T ss_dssp TCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cccCChHHHHHHHHHHHHHHHHhcC--CCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Confidence 1 135 889998887420 025554 556674 67996 567999999999999999999999999764332
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh-----------cccccCcHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM-----------SSFGLVSSQ 307 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~-----------~~~~~~s~~ 307 (469)
+.. ...+... ...+++ |+||+++ +| +|+||+++++ .+.+.+... ...+..+++
T Consensus 269 g~~--~~~~~~~--------~~~di~---s~sK~l~-~G~~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~t~~~~~~ 333 (449)
T 3a8u_X 269 GSM--FGADSFG--------VTPDLM---CIAKQVT-NGAIPMGAVIAST-EIYQTFMNQPTPEYAVEFPHGYTYSAHPV 333 (449)
T ss_dssp SSS--SHHHHHT--------CCCSEE---EECGGGG-TTSSCCEEEEEEH-HHHHHHHTCSSCTTSCSSCCCCTTTTCHH
T ss_pred Ccc--hhhhhcC--------CCCCEE---EEccccc-CCCCceEEEEECH-HHHHHhhccCcccccccccccCCCcccHH
Confidence 321 1112211 112322 8999998 68 9999999964 455544432 112235777
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccee--cCCceEEEEEecccccccCChhHHHHHHHHHH
Q 043923 308 TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCL--KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIV 384 (469)
Q Consensus 308 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll 384 (469)
++.++.++|+... + +...++++++++++.+.|++++ ++.. .+..|+|+|++++....... .+..++...++
T Consensus 334 ~~aa~~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~l~ 407 (449)
T 3a8u_X 334 ACAAGLAALCLLQ---K--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAI-VRPFEAGMALW 407 (449)
T ss_dssp HHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCccccc-ccHHHHHHHHH
Confidence 8877777765321 1 1345566667777888887642 3221 12345789999875321110 02224667776
Q ss_pred HhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 385 YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+ +||.++|+. +++||++.. .+++++++++++|++++++.
T Consensus 408 ~-~Gv~v~~~g-------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 408 K-AGFYVRFGG-------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp H-HTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred H-CCcEEecCC-------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4 599999861 689999753 59999999999999998754
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=234.78 Aligned_cols=331 Identities=14% Similarity=0.114 Sum_probs=205.6
Q ss_pred CCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccc-cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRE-LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
...+||++.+. +++ +++.+.+++.+..+. ... ...|+ .....+|++.++++++ .
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~----------~~~~~~~~~-~~~~~~l~~~la~~~g----------~ 122 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKN----------LTICSRAFF-SVPLGICERYLTNLLG----------Y 122 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTT----------CSCCCTTSE-EHHHHHHHHHHHHHHT----------C
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHh----------CCCccCCcC-CHHHHHHHHHHHhhcC----------C
Confidence 34679998864 344 346666666653111 000 01231 1223555555555542 5
Q ss_pred CcEEEeCChHHHHHHHHHHhc---------CCC-CEEEEccCCCcChHHHHhhhCC------------CEEEEeeccCCC
Q 043923 112 SKIVLTAGATSANETLMFCLA---------EPG-EAFLLPTPYYPGFDRDLKWRTG------------VEIVPIQCTSLN 169 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~---------~~g-d~Vl~~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~ 169 (469)
++|++++|+++|+..++.++. .+| |.|++.+|+|+++...+....| ..++.+|.
T Consensus 123 ~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~---- 198 (433)
T 1z7d_A 123 DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY---- 198 (433)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT----
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC----
Confidence 799999999999999998753 467 9999999999876443222213 23444443
Q ss_pred CcccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchh
Q 043923 170 GFQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIM 247 (469)
Q Consensus 170 ~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~ 247 (469)
.|+++++++++. +++++| +++| +|+||.+ ++.+.+++|.++|++||+++|+||+|.++...+.. .. .
T Consensus 199 ---~d~~~le~~l~~-----~~~~~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~-~~-~ 267 (433)
T 1z7d_A 199 ---DDLEALEEELKD-----PNVCAF-IVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL-LC-V 267 (433)
T ss_dssp ---TCHHHHHHHHTS-----TTEEEE-EECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-SG-G
T ss_pred ---CCHHHHHHHhCC-----CCEEEE-EEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcc-hh-h
Confidence 278999988841 267764 4556 5678975 78999999999999999999999999874333321 11 1
Q ss_pred hhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHH
Q 043923 248 EILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQN 324 (469)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~ 324 (469)
+... ....++ |+||++| +| +|+||+++++ .+.+.+... ...+..+++++.++.++|+... +
T Consensus 268 ~~~~--------~~~di~---t~sK~l~-~G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~ 331 (433)
T 1z7d_A 268 HHYN--------VKPDVI---LLGKALS-GGHYPISAVLAND-DIMLVIKPGEHGSTYGGNPLAASICVEALNVLI---N 331 (433)
T ss_dssp GGGT--------CCCSEE---EECGGGG-TTSSCCEEEEECH-HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH---H
T ss_pred HhcC--------CCCCEE---EECcccc-CCCCCeEEEEECH-HHHhhhccccccccCCCCHHHHHHHHHHHHHHH---h
Confidence 1111 112222 8999999 89 9999999964 444333221 1122357777877777765321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCcee--cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC
Q 043923 325 YISENKKRLKQRHRKLVSGLEKA--GISCL--KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 400 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~~--g~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~ 400 (469)
+...++++++++++.+.|+++ +++.. .+..|+|+|+.++... .+..+++..++ ++||.+.|+
T Consensus 332 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-----~~~~~~~~~l~-~~Gv~v~~~------ 397 (433)
T 1z7d_A 332 --EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-----VNVLDICLKLK-ENGLITRDV------ 397 (433)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-----CCHHHHHHHHH-HTTEECCEE------
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-----hHHHHHHHHHH-HCCeEEecC------
Confidence 134455666667777777665 44321 1234578889886421 11335667766 569999985
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 401 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 401 ~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+.+++|++++. .+++++++++++|++++++..+
T Consensus 398 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 398 HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE 431 (433)
T ss_dssp TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 25689998875 5999999999999999887654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-27 Score=236.65 Aligned_cols=341 Identities=13% Similarity=0.106 Sum_probs=212.9
Q ss_pred CCCCeeeeeccc--cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLAE--NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||++.+. |++. ++.+.+++.+.... .....|+ .....+|++++++++. .+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~-----------~~~~~~~-~~~~~~l~~~la~~~~---------~~ 109 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAER-----------GTSFGAP-TEIENKLAKLVIERVP---------SI 109 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHH-----------CSCCSSC-CHHHHHHHHHHHHHST---------TC
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhh-----------CcCcCCC-CHHHHHHHHHHHHhCC---------CC
Confidence 345689999875 5553 56677766653110 0011233 3455777777777652 47
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcc------------cCHHH
Q 043923 112 SKIVLTAGATSANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQ------------ITETA 177 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~d~~~ 177 (469)
++|++++|+++|+..++..+.. +++.|++.+|+|+++...+....|..+..++.....++. -|+++
T Consensus 110 ~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 3k28_A 110 EIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLES 189 (429)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHH
Confidence 8999999999999999988753 678999999999876544332223222211111111111 17899
Q ss_pred HHHHHHHHHhcCCceeEEEEecC-CCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcccc
Q 043923 178 IEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 255 (469)
Q Consensus 178 l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~ 255 (469)
+++++++.. .++++ ++++| +|++|.+. +.+++++|.++|++||+++|+||+|.++ ..+.. ...+...
T Consensus 190 le~~l~~~~---~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~--~~~~~~~---- 258 (429)
T 3k28_A 190 VKYAFEQFG---DDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYN--CGQGYYG---- 258 (429)
T ss_dssp HHHHHHHHG---GGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTT--HHHHHHT----
T ss_pred HHHHHHhCC---CCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc--hHHHHhC----
Confidence 999887531 24555 55556 45566554 6888999999999999999999999885 33321 1112211
Q ss_pred ccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----cccccCcHHHHHHHHHHhcCchhhHHHHHHHH
Q 043923 256 ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFTQNYISENK 330 (469)
Q Consensus 256 ~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 330 (469)
.... +.|+||++| +|+|+||+++++ .+.+.+... ...+..+++++.++.++|+..+ ++..
T Consensus 259 ----~~~d---i~t~sK~~~-~G~~iG~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~~~~ 323 (429)
T 3k28_A 259 ----VTPD---LTCLGKVIG-GGLPVGAYGGKA-EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT------PESY 323 (429)
T ss_dssp ----CCCS---EEEECGGGG-TTSCCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC------HHHH
T ss_pred ----CCCc---eehhhhhhc-CCCCeEEEEEcH-HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH------HHHH
Confidence 1122 347999998 699999999954 444433321 1223478889998888887643 2344
Q ss_pred HHHHHHHHHHHHHHHhc----CC-ceecCCceEEEEEecccccc-------cCChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 331 KRLKQRHRKLVSGLEKA----GI-SCLKSNAGLFCWVDMRHLLR-------SNTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 331 ~~l~~~~~~l~~~L~~~----g~-~v~~~~~g~~~~v~~~~~~~-------~~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
++++++++++.+.|+++ ++ ...++. |.|+++.+..... ........+++..++ ++||.++|+.
T Consensus 324 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--- 398 (429)
T 3k28_A 324 VEFERKAEMLEAGLRKAAEKHGIPHHINRA-GSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ--- 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST---
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEEee-ccEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCC---
Confidence 55555556666666543 33 233333 4677777643210 011122345666665 5699999873
Q ss_pred CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 399 CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 399 ~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+++|+++. .+++++++++++|++++++.+
T Consensus 399 ---~~~~r~~~~-~t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 399 ---FEGLFLSTV-HSDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp ---TSCBCCCTT-CCHHHHHHHHHHHHHHHHTCC
T ss_pred ---CCCEEEECC-CCHHHHHHHHHHHHHHHHHHh
Confidence 346888765 599999999999999998653
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=234.07 Aligned_cols=328 Identities=15% Similarity=0.103 Sum_probs=217.4
Q ss_pred CCeeeeecccc--cc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAEN--QL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
..+||++.|.+ ++ +++.+.+++.+..+... .....|+ .....+|++.++++++ .++
T Consensus 76 ~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~---------~~~~~~~-~~~~~~l~~~la~~~g----------~~~ 135 (439)
T 2oat_A 76 RKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT---------LTSRAFY-NNVLGEYEEYITKLFN----------YHK 135 (439)
T ss_dssp CEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS---------CCCTTSE-ESSHHHHHHHHHHHHT----------CSE
T ss_pred CEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC---------cccCccC-CHHHHHHHHHHHHhcC----------CCE
Confidence 45799988754 33 34666666655311100 0011232 2345777888877763 578
Q ss_pred EEEeCChHHHHHHHHHHhc---------CCC-CEEEEccCCCcChHH-HHhhhCC------------CEEEEeeccCCCC
Q 043923 114 IVLTAGATSANETLMFCLA---------EPG-EAFLLPTPYYPGFDR-DLKWRTG------------VEIVPIQCTSLNG 170 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~---------~~g-d~Vl~~~P~y~~~~~-~~~~~~g------------~~~~~v~~~~~~~ 170 (469)
|++++|+++|+..++.++. .+| |.|++.+|+|++... .+... | ..++.+|.+
T Consensus 136 v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~-g~~~~~~~~~p~~~~v~~~~~~---- 210 (439)
T 2oat_A 136 VLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSS-TDPTSYDGFGPFMPGFDIIPYN---- 210 (439)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTC-CCHHHHTTSCSCCTTEEEECSS----
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcC-CChhcccCCCCCCCCeEEeCCC----
Confidence 9999999999999998864 357 899999999987643 33332 4 456666542
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 171 FQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 171 ~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
|+++++++++. +++++|+ ++| +|++|. +++.+.+++|.++|++||+++|+||+|.++...+..+ . .+
T Consensus 211 ---d~~~le~~l~~-----~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~-~-~~ 279 (439)
T 2oat_A 211 ---DLPALERALQD-----PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-A-VD 279 (439)
T ss_dssp ---CHHHHHHHTTS-----TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-G-GG
T ss_pred ---CHHHHHHHhCC-----CCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch-h-HH
Confidence 78999988741 2666555 556 567896 5699999999999999999999999998743333221 1 11
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh--cccccCcHHHHHHHHHHhcCchhhHHH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFTQNY 325 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~ 325 (469)
... ....++ |+||++| +| +|+||+++++ .+.+.+... ...+..+++++.++.++|+... +
T Consensus 280 ~~~--------~~~Di~---t~sK~l~-~G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~- 342 (439)
T 2oat_A 280 YEN--------VRPDIV---LLGKALS-GGLYPVSAVLCDD-DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE---E- 342 (439)
T ss_dssp GGT--------CCCSEE---EECGGGG-TTSSCCEEEEECH-HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H-
T ss_pred HhC--------CCCcEE---Eeccccc-CCCCCeEEEEECH-HHHhccCCCCcccCCCcCHHHHHHHHHHHHHHh---h-
Confidence 111 112222 8999998 79 9999999964 444333321 1122367778877777765321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcee--cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 326 ISENKKRLKQRHRKLVSGLEKAGISCL--KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 326 ~~~~~~~l~~~~~~l~~~L~~~g~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
+...++++++++++.+.|+++++++. .+..|.|+|+.++.... .+..+++..++ ++||.+.|+ +++
T Consensus 343 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~----~~~~~l~~~l~-~~Gv~v~~~------~~~ 410 (439)
T 2oat_A 343 -ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----WDAWKVCLRLR-DNGLLAKPT------HGD 410 (439)
T ss_dssp -TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSS----CCHHHHHHHHH-HTTEECCBS------SSS
T ss_pred -hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCcc----HHHHHHHHHHH-HCCeEEecC------CCC
Confidence 23456677788889999988765431 12345788898864210 11335677766 569999974 257
Q ss_pred eEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 404 WFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 404 ~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
++|++++. .+++++++++++|++++++
T Consensus 411 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 411 IIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 89998865 5999999999999998864
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=227.07 Aligned_cols=277 Identities=16% Similarity=0.174 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHh----hhCCCEEEEeec
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLK----WRTGVEIVPIQC 165 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~----~~~g~~~~~v~~ 165 (469)
+|++++|++++ .+ +.+++++| ++|+..++.++.++||.|+++.|+|..+...+. .. |++++.++.
T Consensus 2 ~l~~~la~~~g--------~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 70 (331)
T 1pff_A 2 ALEGKIAKLEH--------AE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF-GVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEECT
T ss_pred hHHHHHHHHhC--------CC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhc-CCEEEEeCC
Confidence 68999999986 33 55555555 899999999999999999999999998876653 35 999998875
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh-cCeEEEEeccccccccCCCCcc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE-KNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~-~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.|++++++++++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+||+|+...+..
T Consensus 71 -------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~---- 130 (331)
T 1pff_A 71 -------AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN---- 130 (331)
T ss_dssp -------TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC----
T ss_pred -------CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC----
Confidence 267888887754 7899999999999999998 6668999999 999999999998643321
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcce-EEEEEecCHHHHHHHHHhccc--c-cCcHHHHHHHHHHhcCch
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFR-VGAIYSNDDMVVAAATKMSSF--G-LVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlR-iG~li~~~~~~~~~~~~~~~~--~-~~s~~~q~~~~~~l~~~~ 320 (469)
++ . .++++++.|+||+||.+|.| +||++++++.+.+.+...... + ..+++.+.++...+..
T Consensus 131 ~~-~------------~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-- 195 (331)
T 1pff_A 131 PL-D------------LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-- 195 (331)
T ss_dssp GG-G------------GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH--
T ss_pred hh-h------------cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch--
Confidence 11 1 25778999999999999999 799999653555555554433 2 3566666665555432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc---------------CCceecC---CceEEEEEecccccccCChhHHHHHHHH
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA---------------GISCLKS---NAGLFCWVDMRHLLRSNTFEAEMELWKK 382 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~---------------g~~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l~~~ 382 (469)
.....+...++.+.+.+.+++. ++++.++ ..+.++.+.++. . +.+..
T Consensus 196 -----~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~ 260 (331)
T 1pff_A 196 -----LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---------L-EKAKK 260 (331)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---------H-HHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---------H-HHHHH
Confidence 2223333444445555555432 1222111 124566677651 1 23455
Q ss_pred HHHhCCeEEeCCCCCC------------------------CCCCCeEEEEeecC-CHHHHHHHHHHHHHH
Q 043923 383 IVYDVKLNISPGSSCH------------------------CTEPGWFRVCFANM-SEDTLKLSMQRLKAF 427 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~------------------------~~~~~~iRi~~~~~-~~e~i~~~l~~L~~~ 427 (469)
.+.++||.+++++.-+ ...++++|++++.. ++++++.++++|+++
T Consensus 261 ~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 261 VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred HHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 6678899887653111 01257999999863 677777777777643
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=231.34 Aligned_cols=322 Identities=13% Similarity=0.118 Sum_probs=219.2
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
++++|+.+.+.+++ +.+++.+. .....|.+..+..+|++++|++++ .+++++++
T Consensus 7 ~~~~l~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~~~~~~l~~~la~~~~----------~~~~~~~~ 60 (374)
T 3uwc_A 7 PYSYLERQFADIEP--YLNDLREF--------------IKTADFTLGAELEKFEKRFAALHN----------APHAIGVG 60 (374)
T ss_dssp CSCCHHHHTSSCHH--HHHHHHHH--------------HHHTCCSSCHHHHHHHHHHHHHTT----------CSEEEEES
T ss_pred eeeccccCCCCchH--HHHHHHHH--------------HHcCCcccChhHHHHHHHHHHHhC----------CCcEEEeC
Confidence 56889988888766 56655542 112246667788999999999985 33788999
Q ss_pred ChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 119 GATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 119 G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
|+++|+..++.++ +++||.|+++.|+|..+...+... |++++.++.+ .++.+|++++++++++ ++++|+
T Consensus 61 ~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~- 130 (374)
T 3uwc_A 61 TGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQA-GATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM- 130 (374)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC-
T ss_pred CHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE-
Confidence 9999999999999 999999999999999999888877 9999999987 4677899999988764 677766
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCccchhhhhhccccccCCcCCeEEEEccCc--ccc
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS--KDL 274 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~ 274 (469)
|+||||.+.+ +++|.++|++||+++|+||+|+... ++... . . . -..+++.|+| |.+
T Consensus 131 --~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~------~-~--------~-~~d~~~~s~~~~K~l 189 (374)
T 3uwc_A 131 --PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDKF------V-G--------S-WGQFACFSLHPLKNL 189 (374)
T ss_dssp --CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE------T-T--------S-SSSEEEEECSSSSSS
T ss_pred --EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCee------c-c--------c-cccEEEEeCCCCCcC
Confidence 8999999887 5568889999999999999998532 22111 1 0 0 1245667766 999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccc-----------c---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSF-----------G---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKL 340 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~-----------~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 340 (469)
|.+|. .|+++++++.+.+.+...... + ..+.+...+....+ .. +++..++.++..+++
T Consensus 190 ~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~--~~-----~~~~~~~~~~~~~~l 261 (374)
T 3uwc_A 190 NVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM--NQ-----LETITEKRRGIAHLY 261 (374)
T ss_dssp CCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG--GG-----HHHHHHHHHHHHHHH
T ss_pred Cccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHH
Confidence 85475 899998777666555443321 0 12233322222222 11 344555556667778
Q ss_pred HHHHHhcC--Cceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--------------C---
Q 043923 341 VSGLEKAG--ISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--------------T--- 400 (469)
Q Consensus 341 ~~~L~~~g--~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--------------~--- 400 (469)
.+.|.+++ +.+.. +.++...|+.++-.. .+..++.+.| .++||.++++..... .
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L-~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (374)
T 3uwc_A 262 DQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-----KYRDQLFQYL-KDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPM 335 (374)
T ss_dssp HHHTGGGTTTEECCCCCTTEECCCSSEEEEE-----TTHHHHHHHH-HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHH
T ss_pred HHHhccCCCeEEeccCCCCCceeeEEEEEEc-----CCHHHHHHHH-HHCCCccccCCCCccccChhhhhcCCccCCCcc
Confidence 88888774 54432 222222221111000 1122455555 466999998851100 0
Q ss_pred ----CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 401 ----EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 401 ----~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
..+.+|+++.. .+++++++++++|++++++.
T Consensus 336 ~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 336 AEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 01579999876 59999999999999999764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=235.66 Aligned_cols=339 Identities=12% Similarity=0.032 Sum_probs=213.1
Q ss_pred Ceeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 39 GIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 39 ~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
.+||+..+ .+.+. ++.+.+++.+.. .....+....+..+...++++.+.+.++ ...++|
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~L~e~la~~~~----~~~~~v 138 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQL-------------RVMNHVMFGGLTHEPAARLAKLLVDITP----AGLDTV 138 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHH-------------HHCSCCCSSSEECHHHHHHHHHHHHHSS----TTEEEE
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCC----CCcCEE
Confidence 67888876 56664 566666665531 1111111011122344444444444432 456799
Q ss_pred EEeCChHHHHHHHHHHhcC-------CC-CEEEEccCCCcChHHHHhhhCC-------------CEEEEeeccCCCCccc
Q 043923 115 VLTAGATSANETLMFCLAE-------PG-EAFLLPTPYYPGFDRDLKWRTG-------------VEIVPIQCTSLNGFQI 173 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~-------~g-d~Vl~~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~ 173 (469)
++++|+++|+..+++.+.. +| +.|++.+|+|.++...+....+ ..+..++.+.......
T Consensus 139 ~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 218 (457)
T 3tfu_A 139 FFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPA 218 (457)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHH
Confidence 9999999999999988764 55 5899999999876544332201 1222233322111124
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEec-CCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhh
Q 043923 174 TETAIEEAYQLAQKRHLKVKGVLVTN-PSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251 (469)
Q Consensus 174 d~~~l~~~i~~~~~~~~~~~~vvl~~-P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~ 251 (469)
|+++|++++++. ..++++|++.. ++||+|.++ +.+.+++|.++|++||+++|+||+|.++...+.. .. .+...
T Consensus 219 d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~-~a-~~~~~ 293 (457)
T 3tfu_A 219 YSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGAL-FA-ADHAG 293 (457)
T ss_dssp HHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-ST-HHHHT
T ss_pred HHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccch-hH-hHhcC
Confidence 788899888742 12677777777 789999876 7788999999999999999999999985333332 11 12211
Q ss_pred ccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH-------hcccccCcHHHHHHHHHHhcCchhhH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
..++++ ||||+++ .| +|+||+++++ .+.+.+.. ....+..+++++.++.++|+....
T Consensus 294 --------~~pdii---t~sK~l~-gG~~~lG~v~~~~-~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~-- 358 (457)
T 3tfu_A 294 --------VSPDIM---CVGKALT-GGYLSLAATLCTA-DVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG-- 358 (457)
T ss_dssp --------CCCSEE---EECGGGG-TTSSCCEEEEEEH-HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT--
T ss_pred --------CCceEE---EEChhhh-CCCcceEEEEEcH-HHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh--
Confidence 223333 8999987 56 7999999954 45444431 112234678888887777652110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
+...+++++..+++.+.|+++ ++....+. |+|+++.++... +..+++..++ ++||.++|.
T Consensus 359 ---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~------~~~~~~~~l~-~~Gv~v~~~----- 422 (457)
T 3tfu_A 359 ---QDWRTRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPV------DLAVATPAAL-DRGVWLRPF----- 422 (457)
T ss_dssp ---SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCC------CHHHHHHHHH-HTTEECCCB-----
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCcc------cHHHHHHHHH-HCCeEEEec-----
Confidence 122344455556666666654 23333344 478888886531 1335667766 459999874
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 400 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 400 ~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+++|+++.. .+++++++++++|++++++..
T Consensus 423 --~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 423 --RNLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 2589999765 499999999999999998653
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=231.57 Aligned_cols=286 Identities=16% Similarity=0.193 Sum_probs=190.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----Hhhh
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWR 155 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~ 155 (469)
.+|+. .+..+|++++|++++ . .+.|++++| ++|+..++. ++++||.|+++.|.|.+.... ++..
T Consensus 62 ~r~~~-p~~~~l~~~la~~~g--------~-~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~ 129 (403)
T 3cog_A 62 SRSGN-PTRNCLEKAVAALDG--------A-KYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEF 129 (403)
T ss_dssp ----C-HHHHHHHHHHHHHHT--------C-SEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGG
T ss_pred cCCCC-chHHHHHHHHHHHhC--------C-CcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHc
Confidence 34553 357899999999986 2 266777766 589999998 889999999999999875443 3455
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC-eEEEEecccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN-IHLISDEIYS 234 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~-~~iI~Deay~ 234 (469)
|++++.++.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|+++| +++|+||+|+
T Consensus 130 -G~~v~~v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~ 192 (403)
T 3cog_A 130 -GLKISFVDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFM 192 (403)
T ss_dssp -TCEEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTT
T ss_pred -CCEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCc
Confidence 9999999864 67888888764 8999999999999999998 666899999999 9999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhcc-cc-cCcHHHHHH
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSS-FG-LVSSQTQYL 311 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~-~~-~~s~~~q~~ 311 (469)
.+.+. . + + ..+.+++++|+||.+|.+| +|+||++++++.+.+.+..... ++ ..+++.+.+
T Consensus 193 ~~~~~-~---~---~----------~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~ 255 (403)
T 3cog_A 193 SPYFQ-R---P---L----------ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYL 255 (403)
T ss_dssp CTTTC-C---T---T----------TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred ccccC-C---c---c----------ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 75432 1 1 1 1156789999999998766 5799999966666555444332 22 357778877
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---------------CCceecC----CceEEEEEecccccccCC
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA---------------GISCLKS----NAGLFCWVDMRHLLRSNT 372 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---------------g~~v~~~----~~g~~~~v~~~~~~~~~~ 372 (469)
+.+.++.. ..+.++..++...+.+.|+++ ++++.++ .++++. +.+++.
T Consensus 256 ~~~~l~~l-------~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~-~~l~~~----- 322 (403)
T 3cog_A 256 CNRGLKTL-------HVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVT-FYIKGT----- 322 (403)
T ss_dssp HHHHHTTH-------HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEE-EEESSC-----
T ss_pred HHhhhhHH-------HHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEE-EEecCC-----
Confidence 77777653 222333344444455555443 2333222 255554 466531
Q ss_pred hhHHHHHHHHHHHhCCeEEeC---C----------CCCCC-----------CCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 373 FEAEMELWKKIVYDVKLNISP---G----------SSCHC-----------TEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 373 ~~~~~~l~~~ll~~~GI~v~p---g----------~~f~~-----------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
. +...+++++.||.++. | +.+.. ..++++|||++. ++.+..++.|.+++
T Consensus 323 -~---~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~d~i~~l~~al 395 (403)
T 3cog_A 323 -L---QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL---EDEEDLLEDLDQAL 395 (403)
T ss_dssp -H---HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred -H---HHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHH
Confidence 0 1244556677886542 2 11111 125799999985 33455566666665
Q ss_pred Hhh
Q 043923 429 DSI 431 (469)
Q Consensus 429 ~~~ 431 (469)
++.
T Consensus 396 ~~~ 398 (403)
T 3cog_A 396 KAA 398 (403)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=232.03 Aligned_cols=285 Identities=14% Similarity=0.176 Sum_probs=198.0
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhh----hCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKW----RTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~----~~g~~~~~v 163 (469)
..+|++.++++++ .+.+++++|+++|+..++.+++++||.|+++.|+|.++...+.. . |++++.+
T Consensus 83 ~~~l~~~la~~~g----------~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~v 151 (414)
T 3ndn_A 83 VSVFEERLRLIEG----------APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRW-GVQTVFV 151 (414)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHc-CcEEEEe
Confidence 4556666666653 46789999999999999999999999999999999998766643 5 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+...
T Consensus 152 ~~~-------d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~-- 213 (414)
T 3ndn_A 152 DGD-------DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQG-- 213 (414)
T ss_dssp CTT-------CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCC--
T ss_pred CCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCCc--
Confidence 864 78999988864 7899999999999999987 56689999999999999999984322211
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH-hcccc-cCcHHHHHHHHHHhcCch
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-MSSFG-LVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~-~~~~~-~~s~~~q~~~~~~l~~~~ 320 (469)
+ ..+.++++.|+||.+|.+| +++|+++++++.+.+.+.. ...++ ..++...+++...++.
T Consensus 214 --~-------------~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-- 276 (414)
T 3ndn_A 214 --F-------------PLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET-- 276 (414)
T ss_dssp --G-------------GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG--
T ss_pred --h-------------hcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Confidence 1 1145688899999999778 8999999976655433332 22222 2445544444443322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecCC----------------ceEEEEEecccccccCChhHHHHHHHH
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKSN----------------AGLFCWVDMRHLLRSNTFEAEMELWKK 382 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~~----------------~g~~~~v~~~~~~~~~~~~~~~~l~~~ 382 (469)
+..+.++..++++.+.+.|+++ ++. +..|. .|.++++.+++... ...+....++..
T Consensus 277 -----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~~ 350 (414)
T 3ndn_A 277 -----LAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLDK 350 (414)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHHh
Confidence 3445566677778888888876 332 22221 46789999874200 001222234443
Q ss_pred HHHhCCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 383 IVYDVKLNISPGSSCHC---------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~---------------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
++..++.+.+|..+.. ..++++|||++. |+.+.+++.|++++
T Consensus 351 -l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 351 -MRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp -CSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred -CccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 3456777777765432 135799999985 55677777777765
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=233.12 Aligned_cols=324 Identities=12% Similarity=0.157 Sum_probs=213.9
Q ss_pred CCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCC-CCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 36 NPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQ-DYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 36 ~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
+..++++|+.+.+.+++.. .+++.+. -....|+ +..+..+|++++|++++ .+++
T Consensus 20 ~~~~~~~l~~~~p~~~~~~-~~a~~~~--------------~~~~~~~~~~~~~~~l~~~la~~~~----------~~~~ 74 (391)
T 3dr4_A 20 HMSDLPRISVAAPRLDGNE-RDYVLEC--------------MDTTWISSVGRFIVEFEKAFADYCG----------VKHA 74 (391)
T ss_dssp --------CCCCCCCCSSH-HHHHHHH--------------HHHTCCSSCSHHHHHHHHHHHHHHT----------CSEE
T ss_pred hcCCCceeccCCCCCCHHH-HHHHHHH--------------HHcCCccCCChHHHHHHHHHHHHhC----------CCcE
Confidence 3457899999988777443 3333331 1112455 56788999999999996 2378
Q ss_pred EEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 115 VLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
++++|+++|+..++.++ +++||.|+++.|+|..+...+... |++++.+++++ .++.+|++++++++++ +++
T Consensus 75 i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~ 146 (391)
T 3dr4_A 75 IACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYC-GATPVLVDNDP-RTFNLDAAKLEALITP------RTK 146 (391)
T ss_dssp EEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTCSBCGGGSGGGCCT------TEE
T ss_pred EEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHC-CCEEEEEecCc-cccCcCHHHHHHhcCC------Cce
Confidence 88999999999999999 899999999999999999888877 99999999874 3578899999988764 777
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCccchhhhhhccccccCCcCCeEEEEccCc-
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS- 271 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S- 271 (469)
+|+ |+||||...+ +++|.++|+++|+++|+|++|+... +.+.. .. ... .+.+.|||
T Consensus 147 ~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~------------~~~-di~~~S~s~ 204 (391)
T 3dr4_A 147 AIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKK---SG------------SLG-DCATFSFFG 204 (391)
T ss_dssp EEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TT------------SSS-SEEEEECBT
T ss_pred EEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCee---ec------------ccC-CEEEEECCC
Confidence 766 5789999877 5558889999999999999998422 22111 00 111 25566766
Q ss_pred -cccCCCcceEEEEEecCHHHHHHHHHhcccc----------------cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Q 043923 272 -KDLGLPGFRVGAIYSNDDMVVAAATKMSSFG----------------LVSSQTQYLLSALLSDKKFTQNYISENKKRLK 334 (469)
Q Consensus 272 -K~~g~~GlRiG~li~~~~~~~~~~~~~~~~~----------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~ 334 (469)
|.++ |.+.|+++++++.+.+.+......+ ..+.+...+ .+... ..+++..++.+
T Consensus 205 ~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~--~~~~~-----~~~~~~~~~~~ 275 (391)
T 3dr4_A 205 NAIIT--TGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAI--GLAQL-----ERVDEHLAARE 275 (391)
T ss_dssp TSSSC--CBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHH--HHHHH-----HTHHHHHHHHH
T ss_pred CCcCC--cCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHH--HHHHH-----HHHHHHHHHHH
Confidence 7764 4578999998776665554433211 122222222 22211 12344556666
Q ss_pred HHHHHHHHHHHhcCCceecC------Cce-EEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCC---CCC----
Q 043923 335 QRHRKLVSGLEKAGISCLKS------NAG-LFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC---HCT---- 400 (469)
Q Consensus 335 ~~~~~l~~~L~~~g~~v~~~------~~g-~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f---~~~---- 400 (469)
+..+++.+.|.+.|+.+..+ ..+ +.+++.++.... .+..++.+.|. ++||.+++|... .+.
T Consensus 276 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~L~-~~GI~v~~~~~p~~~~~~~~~~ 350 (391)
T 3dr4_A 276 RVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLS----TTRDQVIKDLD-ALGIESRPVFHPMHIMPPYAHL 350 (391)
T ss_dssp HHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCS----SCHHHHHHHHH-HTTCCCEECCCCGGGSGGGGGG
T ss_pred HHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccc----hhHHHHHHHHH-HCCCceeecCCccccChhhhhc
Confidence 67778888888888776654 122 234666653100 11235666655 569999987511 000
Q ss_pred -----------CCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 401 -----------EPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 401 -----------~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
....+|+++.. ++++++++++++|++++
T Consensus 351 ~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 351 ATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 13479999876 59999999999998764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=235.22 Aligned_cols=338 Identities=12% Similarity=0.070 Sum_probs=207.3
Q ss_pred CCCeeeeeccc--cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+. +++. ++.+.+++.+.. .....|.. ..+++.++++++.+.++ .++
T Consensus 51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~---~~~~~~~la~~l~~~~~-----~~~ 109 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAM-------------EKGTSFGA---PCALENVLAEMVNDAVP-----SIE 109 (427)
T ss_dssp SCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------TTCSCCSS---CCHHHHHHHHHHHHHST-----TCS
T ss_pred CCEEEECCCchhhhccCCCCHHHHHHHHHHH-------------HhCCCcCC---CCHHHHHHHHHHHHhCC-----CCC
Confidence 44689999875 5553 566666666531 11122322 24666777777766543 478
Q ss_pred cEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCE-------------------EEEeeccCCCCc
Q 043923 113 KIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVE-------------------IVPIQCTSLNGF 171 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~-------------------~~~v~~~~~~~~ 171 (469)
+|++++|+++|+..++.... ..++.|++..|+|+++...+....|.. ++.+|.+
T Consensus 110 ~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 184 (427)
T 3fq8_A 110 MVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN----- 184 (427)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----
Confidence 99999999999999994432 235789999999987544332221211 3333321
Q ss_pred ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhh
Q 043923 172 QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMS-RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 250 (469)
Q Consensus 172 ~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s-~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~ 250 (469)
|++++++++++. ..++++|+++.++|++|.+.+ .+.+++|.++|++||++||+||+|.++ ..+.. ...+..
T Consensus 185 --d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~--~~~~~~ 256 (427)
T 3fq8_A 185 --DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYG--GVQEKF 256 (427)
T ss_dssp --CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT--HHHHHT
T ss_pred --CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc--hhhHhc
Confidence 789999988752 125666565555677887665 566999999999999999999999975 33321 111111
Q ss_pred hccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----cccccCcHHHHHHHHHHhcCchhhHHH
Q 043923 251 KDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFTQNY 325 (469)
Q Consensus 251 ~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~~~~ 325 (469)
. .... +.|+||++| +|+|+||++++ +.+.+.+... ...+..+++++.++.++++.... ++.
T Consensus 257 ~--------~~~d---i~t~sK~~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~ 322 (427)
T 3fq8_A 257 G--------VTPD---LTTLGKIIG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGT 322 (427)
T ss_dssp T--------CCCS---EEEECGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTH
T ss_pred C--------CCCC---hhhhhhhhh-CCcceEEEEEc-HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCH
Confidence 1 1112 358999999 89999999984 4444444321 12223577888887777652211 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc-------CChhHHHHHHHHHHHhCCeEEeCCCCCC
Q 043923 326 ISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS-------NTFEAEMELWKKIVYDVKLNISPGSSCH 398 (469)
Q Consensus 326 ~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~-------~~~~~~~~l~~~ll~~~GI~v~pg~~f~ 398 (469)
.++.++..+..++.|.+.+.+.++....+..|+++|+.++..... .......+++..++ ++||.++|+..
T Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~~~-- 399 (427)
T 3fq8_A 323 YEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQF-- 399 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHH-HCCcEEecCCC--
Confidence 233333333333344444444455444444568889988642110 11112335666665 56999998753
Q ss_pred CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 399 CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 399 ~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
..+|+++. .+++++++++++|++++++
T Consensus 400 ----~r~~~~~~-~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 400 ----EAGFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp ----SCEECCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred ----CCEEeeCc-CCHHHHHHHHHHHHHHHHh
Confidence 23555544 4999999999999999875
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=237.27 Aligned_cols=320 Identities=15% Similarity=0.187 Sum_probs=207.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC-----C----CEEEEccCCCcChHHH
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEP-----G----EAFLLPTPYYPGFDRD 151 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~-----g----d~Vl~~~P~y~~~~~~ 151 (469)
.|.+..+..+|++++|++++ .+++++|+|+++|+..++.+++++ | |.|++..+.|..+...
T Consensus 69 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~ 138 (467)
T 2oqx_A 69 AYSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred eeccCchhHHHHHHHHHHhC----------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhh
Confidence 57777788999999999985 368999999999999999999888 8 9888774444433344
Q ss_pred HhhhCCCEEEEeec----cCC----CCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCCCHHHHHHHHHHHHh
Q 043923 152 LKWRTGVEIVPIQC----TSL----NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTMSRNELNLLVNIITE 222 (469)
Q Consensus 152 ~~~~~g~~~~~v~~----~~~----~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~ 222 (469)
.... |..++.... +.. .++.+|+++|++++++.. .+++++|++++|+||| |.+++.+++++|.++|++
T Consensus 139 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~ 215 (467)
T 2oqx_A 139 SQIN-GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHT-TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred hhcc-CcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 4444 777665421 111 235689999999997521 1268999999999998 999999999999999999
Q ss_pred cCeEEEEeccccc----------cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC-cceEEEEEecCH--
Q 043923 223 KNIHLISDEIYSG----------TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDD-- 289 (469)
Q Consensus 223 ~~~~iI~Deay~~----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~-GlRiG~li~~~~-- 289 (469)
||++||+|+++.. ..+.+. +...+..+. ....+ +++.|+||++|++ | ||++++++
T Consensus 216 ~gi~li~D~a~~~e~~~~~~~~~~~~~g~---~~~~~~~~~----~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~ 283 (467)
T 2oqx_A 216 YDIPVVMDSARFAENAYFIKQREAEYKDW---TIEQITRET----YKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSF 283 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTS---CHHHHHHHH----GGGCS--EEEEESSSTTCCSSC---EEEEECSGGG
T ss_pred cCCEEEEEchhhhhhhhhcccccccccCc---cHHHHhhhh----hccCC--eEEEecccccCCCCc---eEEEecChhH
Confidence 9999999966542 112222 232221000 00113 3467999999877 5 88888665
Q ss_pred -HHHHHHHHhc-------ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEE
Q 043923 290 -MVVAAATKMS-------SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 361 (469)
Q Consensus 290 -~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~ 361 (469)
.....++... .++..+.....++...+.. ++. +...+...++++++.+.|++.++++. +.+++++|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~--~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~ 357 (467)
T 2oqx_A 284 FDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD--GMN---LDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAF 357 (467)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH--TTC---HHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEE
T ss_pred HHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHh--hhh---HHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEE
Confidence 2222222221 1111222222222222111 100 12233445677888889988888887 77789999
Q ss_pred Eeccc---ccccCChhHHHHHHHHHHHhCCeEEeCCCCC--CC---------CCCCeEEEEeec--CCHHHHHHHHHHHH
Q 043923 362 VDMRH---LLRSNTFEAEMELWKKIVYDVKLNISPGSSC--HC---------TEPGWFRVCFAN--MSEDTLKLSMQRLK 425 (469)
Q Consensus 362 v~~~~---~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f--~~---------~~~~~iRi~~~~--~~~e~i~~~l~~L~ 425 (469)
++++. ......+ +...++..|+.++||.+.|+..| +. ...+++|++++. .+++++++++++|+
T Consensus 358 ~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~ 436 (467)
T 2oqx_A 358 VDAGKLLPHIPADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFK 436 (467)
T ss_dssp EEHHHHSTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHH
T ss_pred EechhhcccCCcccc-cHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 98853 1111111 13345677756779999985532 11 013799999984 48999999999999
Q ss_pred HHHHhhc
Q 043923 426 AFVDSIT 432 (469)
Q Consensus 426 ~~l~~~~ 432 (469)
+++++.+
T Consensus 437 ~~l~~~~ 443 (467)
T 2oqx_A 437 HVKENAA 443 (467)
T ss_dssp HHHHSGG
T ss_pred HHHhhhh
Confidence 9998654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=225.39 Aligned_cols=282 Identities=17% Similarity=0.172 Sum_probs=200.1
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
...+|++.+|++++ .+++++++|+++|+..++.+++++||.|+++.|.|.++...+ ... |++++.
T Consensus 67 ~~~~l~~~la~~~g----------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~ 135 (392)
T 3qhx_A 67 TRTALEAALAAVED----------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW-NVEYTP 135 (392)
T ss_dssp HHHHHHHHHHHHTT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGG-TCEEEE
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhc-CcEEEE
Confidence 45788888888874 347889999999999999999999999999999998776655 455 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|++||+++|+|++|+..++ ..
T Consensus 136 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~~- 197 (392)
T 3qhx_A 136 VALA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-QQ- 197 (392)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-CC-
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-CC-
Confidence 9864 78999988864 8999999999999999988 66689999999999999999985321 11
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhcc-c-ccCcHHHHHHHHHHhcCc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSS-F-GLVSSQTQYLLSALLSDK 319 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~ 319 (469)
.. ..+.++++.|+||.+|.+| +|+||++++++.+.+.+..... . ...++..++++...++..
T Consensus 198 ---~~------------~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l 262 (392)
T 3qhx_A 198 ---PL------------SLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL 262 (392)
T ss_dssp ---GG------------GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred ---hH------------HhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH
Confidence 11 1245688999999999777 8999999976555555443332 2 235667777776666552
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecC----------------CceEEEEEecccccccCChhHHHHHHH
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKS----------------NAGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~----------------~~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
..+.++..++.+.+.+.|+++ .+. +..| ..|.++++.+++.. .....++.
T Consensus 263 -------~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-----~~~~~~~~ 330 (392)
T 3qhx_A 263 -------VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-----TAAEQLCA 330 (392)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-----HHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-----HHHHHHHH
Confidence 334455566777788888776 332 2211 12567888887421 11223333
Q ss_pred HHHHhCCeEEeCCCCCCC------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 382 KIVYDVKLNISPGSSCHC------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~f~~------------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
.++..|+.+..|+.+.. ..++.||||++. ++.+..++.|.+++
T Consensus 331 -~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~~~i~~l~~al 391 (392)
T 3qhx_A 331 -KTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI---EDVADLLDDLKQAL 391 (392)
T ss_dssp -HCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred -hCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc---CCHHHHHHHHHHHh
Confidence 34456777777765321 135789999985 45666666666654
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-26 Score=228.50 Aligned_cols=302 Identities=14% Similarity=0.146 Sum_probs=201.7
Q ss_pred cCCCCCC----cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhh
Q 043923 81 LFQDYHG----LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWR 155 (469)
Q Consensus 81 ~Y~~~~g----~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~ 155 (469)
.|++..| ..++++.++++++ .+ ++++++++++|+..++.++ +++||.|+++.|+|..+...+...
T Consensus 33 ~~~~~~g~~~l~~~l~~~la~~~g--------~~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~ 102 (418)
T 2c81_A 33 ISGYWTGEESMERKFAKAFADFNG--------VP--YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNV 102 (418)
T ss_dssp TTSBCCSSCCHHHHHHHHHHHHHT--------CS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT
T ss_pred ccCcccCCHHHHHHHHHHHHHHhC--------CC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHc
Confidence 4766667 4555555555553 22 5666777789999999999 899999999999999999888877
Q ss_pred CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 156 TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 156 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
|++++.+++++ ++|.+|++++++++++ ++++|+++ ||||...+ +++|.++|++||++||+||+|+.
T Consensus 103 -g~~~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~~~~~~~~~li~D~a~~~ 168 (418)
T 2c81_A 103 -NALPVFVDVEA-DTYCIDPQLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINEIAQEHNLFVIEDCAQSH 168 (418)
T ss_dssp -TCEEEEECBCT-TTCSBCHHHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHHHHHHTTCEEEEECTTCT
T ss_pred -CCEEEEEecCC-CCCCcCHHHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHHHHHHCCCEEEEECcccc
Confidence 99999999874 3678999999988764 78887764 58998765 66688999999999999999987
Q ss_pred cc-cCCCCccchhhhhhccccccCCcCCeEEEEccC--ccccCCCcceEEEEEecCHHHHHHHHHhccccc---------
Q 043923 236 TV-FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL--SKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--------- 303 (469)
Q Consensus 236 ~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~--------- 303 (469)
+. +++.. +..+ . .+.+.|| ||.+|. | |+||++++++.+.+.+......+.
T Consensus 169 ~~~~~~~~---~~~~------------~-~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T 2c81_A 169 GSVWNNQR---AGTI------------G-DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSEL 230 (418)
T ss_dssp TCEETTEE---TTSS------------S-SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGC
T ss_pred cCccCCEe---cccc------------c-ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence 54 33221 1111 1 2556677 999995 8 999999965555444433221110
Q ss_pred ----C------c--------HHHHHHHH-HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee-cCCc-eEEEE
Q 043923 304 ----V------S--------SQTQYLLS-ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL-KSNA-GLFCW 361 (469)
Q Consensus 304 ----~------s--------~~~q~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-~~~~-g~~~~ 361 (469)
. . ...+.++. ..+. .+++..++.++.++++.+.|+++ |+++. ++.+ +...|
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 303 (418)
T 2c81_A 231 MHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQ-------ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTY 303 (418)
T ss_dssp CTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCC
T ss_pred ccchhhccccccccCcCCCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCccccc
Confidence 0 0 11111111 1111 13445555566678888889877 77776 4444 33222
Q ss_pred ----EecccccccCChhHHHHHHHHHHHhCCeE---EeCCCCCC---------------------------CCC------
Q 043923 362 ----VDMRHLLRSNTFEAEMELWKKIVYDVKLN---ISPGSSCH---------------------------CTE------ 401 (469)
Q Consensus 362 ----v~~~~~~~~~~~~~~~~l~~~ll~~~GI~---v~pg~~f~---------------------------~~~------ 401 (469)
+.++..... . .+..++.+.|.+++||. +.++.... ..-
T Consensus 304 ~~~~~~~~~~~~~-~-~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (418)
T 2c81_A 304 YGYVFRFDPVKFG-G-LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERA 381 (418)
T ss_dssp SEEEEEECGGGTT-T-CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH
T ss_pred EEEEEEEcccccc-c-cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHH
Confidence 666531000 0 12335667666555999 88875210 000
Q ss_pred -CCeEEEEeec-C-CHHHHHHHHHHHHHHHHhhcc
Q 043923 402 -PGWFRVCFAN-M-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 402 -~~~iRi~~~~-~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+.+||++.. + +++++++++++|++++++.+.
T Consensus 382 ~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~~ 416 (418)
T 2c81_A 382 SGQSIVIHHAILLAEPSHLSLLVDAVAELARKFCV 416 (418)
T ss_dssp HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred HhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1489999965 6 899999999999999987766
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=223.99 Aligned_cols=282 Identities=16% Similarity=0.153 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIV 161 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~ 161 (469)
....+|++.++++++ . + +.++++++++|+..++.+++++||.|+++.|.|.++...+ ... |++++
T Consensus 65 ~~~~~l~~~la~~~g--------~-~-~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~ 133 (398)
T 1gc0_A 65 PTLNLLEARMASLEG--------G-E-AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLR 133 (398)
T ss_dssp HHHHHHHHHHHHHHT--------C-S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGG-TCEEE
T ss_pred hHHHHHHHHHHHHhC--------C-C-cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHc-CCEEE
Confidence 356788888888875 2 2 4555555579999999999999999999999999887665 455 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.++.+ |++++++++++ ++++|++++|+||||.+++ +++|.++|++||+++|+||+|..+.+..
T Consensus 134 ~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~- 196 (398)
T 1gc0_A 134 HVDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR- 196 (398)
T ss_dssp EECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC-
T ss_pred EECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 88753 78889888764 8899999999999999997 6668999999999999999998654321
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhcc--c-ccCcHHHHHHHHHHhc
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSS--F-GLVSSQTQYLLSALLS 317 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~--~-~~~s~~~q~~~~~~l~ 317 (469)
. + ..+.++++.|+||.+|.+|.|+ ||++++++.+...+..... + +..+++.++++.+.++
T Consensus 197 ---~---~----------~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (398)
T 1gc0_A 197 ---P---L----------ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK 260 (398)
T ss_dssp ---G---G----------GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred ---c---h----------hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccc
Confidence 1 1 1146788899999999999998 9999966555433433222 2 2367777777666665
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-C--------------ceecC---CceEEEEEecccccccCChhHHHHH
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAG-I--------------SCLKS---NAGLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~--------------~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
. +..+.++..++.+.+.+.|++++ + ++..+ ..|.++.+.++.. .+.
T Consensus 261 ~-------~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~ 324 (398)
T 1gc0_A 261 T-------LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG---------IGA 324 (398)
T ss_dssp T-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH---------HHH
T ss_pred h-------HHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC---------HHH
Confidence 3 23444555666677777777642 1 11111 1234555676531 123
Q ss_pred HHHHHHhCCeEEeC---CCCC------------C---------CCCCCeEEEEeecC-CHHHHHHHHHHHHHH
Q 043923 380 WKKIVYDVKLNISP---GSSC------------H---------CTEPGWFRVCFANM-SEDTLKLSMQRLKAF 427 (469)
Q Consensus 380 ~~~ll~~~GI~v~p---g~~f------------~---------~~~~~~iRi~~~~~-~~e~i~~~l~~L~~~ 427 (469)
...++.+.||.++. |+.. . ...++++|||++.. ++++++.+.++|+++
T Consensus 325 ~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 325 GRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 55667778888776 3220 0 01257999999863 566666666666543
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=234.75 Aligned_cols=296 Identities=12% Similarity=0.058 Sum_probs=205.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCE---EEEccCCCcChHH----HHhhhCCCEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEA---FLLPTPYYPGFDR----DLKWRTGVEI 160 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~---Vl~~~P~y~~~~~----~~~~~~g~~~ 160 (469)
..++++.+|++++ .++++|++|+|+++++..++.++.++|+. |+++.|+|++... .++.. |+++
T Consensus 113 ~~~l~~~la~~~g--------~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~-G~~~ 183 (465)
T 3e9k_A 113 DESIVGLMKDIVG--------ANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLNI 183 (465)
T ss_dssp THHHHGGGHHHHT--------CCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHT-TCCH
T ss_pred HHHHHHHHHHHcC--------CCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHc-CCcc
Confidence 3668888888875 56899999999999999999999877655 9999999987443 44545 8775
Q ss_pred E-----EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccc
Q 043923 161 V-----PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSG 235 (469)
Q Consensus 161 ~-----~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~ 235 (469)
. .+|.+ +++.+|+++++++|++. ++++++|++++|+||||.+++. ++|.++|++||+++|+|++|+.
T Consensus 184 ~~~~v~~~~~~--~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~l---~~i~~la~~~g~~vi~D~a~~~ 255 (465)
T 3e9k_A 184 EESMRMIKPRE--GEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFNI---PAITKAGQAKGCYVGFDLAHAV 255 (465)
T ss_dssp HHHEEEECCCT--TCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCCH---HHHHHHHHHTTCEEEEECTTTT
T ss_pred eeeeEEEecCC--CCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeecH---HHHHHHHHHcCCEEEEEhhhhc
Confidence 2 23433 56778999999999742 1378999999999999999985 5588899999999999999973
Q ss_pred cccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc---------------
Q 043923 236 TVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--------------- 300 (469)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--------------- 300 (469)
+..+ ..+... +..++++|++|.++....++|+++++++.+.........
T Consensus 256 ---g~~~-~~~~~~------------~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 319 (465)
T 3e9k_A 256 ---GNVE-LYLHDW------------GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNK 319 (465)
T ss_dssp ---TTSC-CCHHHH------------TCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSC
T ss_pred ---CCcC-Cchhhc------------CCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCC
Confidence 2221 222222 456888999999932233789998865443211000000
Q ss_pred -----------cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCceecCC---
Q 043923 301 -----------FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-----------AGISCLKSN--- 355 (469)
Q Consensus 301 -----------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-----------~g~~v~~~~--- 355 (469)
.++.+.+...++.+++.... ...+++.++++.+.++++.+.|++ .|+++..+.
T Consensus 320 ~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~ 397 (465)
T 3e9k_A 320 LQLIPGVCGFRISNPPILLVCSLHASLEIFK--QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVE 397 (465)
T ss_dssp CCBCSSGGGGCCSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGG
T ss_pred cCcCCChHHhccCCccHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHh
Confidence 01344444555444443211 112577788888888999999987 577777654
Q ss_pred -ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 356 -AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 356 -~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.|.++++.++. ... ++.+.|. ++||.+..+ .++++|+++ .. .+++++++++++|++++++.+
T Consensus 398 ~~g~~~~~~~~~--~~~------~l~~~L~-~~Gi~v~~~------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 398 ERGCQLTITFSV--PNK------DVFQELE-KRGVVCDKR------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp GBCSCEEEEECC--TTC------CHHHHHH-TTTEECEEE------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred hcccEEEEEecC--CHH------HHHHHHH-HCCEEEecC------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 36788888762 111 3555555 669998732 357999998 33 489999999999999998654
Q ss_pred c
Q 043923 433 T 433 (469)
Q Consensus 433 ~ 433 (469)
+
T Consensus 463 ~ 463 (465)
T 3e9k_A 463 T 463 (465)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=232.31 Aligned_cols=360 Identities=13% Similarity=0.073 Sum_probs=224.9
Q ss_pred CCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccc-cCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 36 NPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELA-LFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 36 ~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
....+||++.| .+++. ++.+.+++.+.. .... .|....+..+++.++++.+.+..+ ..
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~lae~l~~~~~----~~ 115 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQM-------------RELPYYNTFFKTTHVPAIALAQKLAELAP----GD 115 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCSCCCSSSSEECHHHHHHHHHHHHHSC----TT
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHHhCC----CC
Confidence 34568999887 66664 466776666531 1111 222223345666666666665543 45
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEEccCCCcChHHHHhhhCCC-----------EEEEeeccC--C-
Q 043923 111 TSKIVLTAGATSANETLMFCLAE--------PGEAFLLPTPYYPGFDRDLKWRTGV-----------EIVPIQCTS--L- 168 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~--------~gd~Vl~~~P~y~~~~~~~~~~~g~-----------~~~~v~~~~--~- 168 (469)
.++|++++|+++|+..+++.+.. +++.|++.+|+|.++...+....|. .+..++.+. .
T Consensus 116 ~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~ 195 (472)
T 3hmu_A 116 LNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAE 195 (472)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccC
Confidence 68999999999999999998864 4689999999999886555433221 233444221 0
Q ss_pred CCcccC--------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 169 NGFQIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 169 ~~~~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
+++ .| +++|++.+++.. ..++.+|++..++|++|.+. +.+.+++|.++|++||+++|+||+|.++...
T Consensus 196 ~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~ 272 (472)
T 3hmu_A 196 GGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRT 272 (472)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred Ccc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCccc
Confidence 111 23 677887776421 12556555554466777755 8899999999999999999999999985333
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--c--ccccCcHHHHHHHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--S--SFGLVSSQTQYLLSAL 315 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~--~~~~~s~~~q~~~~~~ 315 (469)
+.. .. .+... ..+.++ +|||++|..|+|+||++++ +.+.+.+... . ..+..+++++.++.++
T Consensus 273 G~~-~a-~~~~~--------v~pdi~---t~sK~l~gg~~plG~v~~~-~~i~~~~~~~~~~~~~t~~~np~a~aAa~aa 338 (472)
T 3hmu_A 273 GNW-FG-TQTMG--------IRPHIM---TIAKGLSSGYAPIGGSIVC-DEVAHVIGKDEFNHGYTYSGHPVAAAVALEN 338 (472)
T ss_dssp SSS-CH-HHHHT--------CCCSEE---EECGGGTTTSSCCEEEEEE-HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHH
T ss_pred Ccc-ch-hHHhC--------CCCcee---eechhhhcCCcceEEEEEC-HHHHHhcccCCccccCCCCCCHHHHHHHHHH
Confidence 322 11 22211 223333 6899998455999999995 4455555311 1 1234678888888887
Q ss_pred hcCchhhHHHHHHHHHHHH-HHHHHHHHHHHhc---C-CceecCCceEEEEEecccccccC-C-----hhHHHHHHHHHH
Q 043923 316 LSDKKFTQNYISENKKRLK-QRHRKLVSGLEKA---G-ISCLKSNAGLFCWVDMRHLLRSN-T-----FEAEMELWKKIV 384 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~-~~~~~l~~~L~~~---g-~~v~~~~~g~~~~v~~~~~~~~~-~-----~~~~~~l~~~ll 384 (469)
|+..+. +...+.++ ++.+++.+.|+++ + +....+.+ .|+++.+....... . .....+++..++
T Consensus 339 L~~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 412 (472)
T 3hmu_A 339 LRILEE-----ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVG-MMASIALTPNKASRAKFASEPGTIGYICRERCF 412 (472)
T ss_dssp HHHHHH-----TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEET-TEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHH
T ss_pred HHHHHH-----hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC-ceEEEEEecCccccccccchhHHHHHHHHHHHH
Confidence 753211 12334444 5555666666544 2 33344444 57777765321110 0 112335566666
Q ss_pred HhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcccccccccccc
Q 043923 385 YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTLHNQSNHQS 443 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~~~~~~~~~~ 443 (469)
++||.++|+. +++||++.. .+++++++++++|++++++..+...+|+--+|
T Consensus 413 -~~Gv~v~~~g-------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~~~~~~~~~~~ 464 (472)
T 3hmu_A 413 -ANNLIMRHVG-------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQAEIEKQGLMKS 464 (472)
T ss_dssp -HTTBCCEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCB
T ss_pred -HCCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 5699999862 689999654 49999999999999999887776666555444
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=230.93 Aligned_cols=351 Identities=11% Similarity=0.045 Sum_probs=227.2
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+ .+.+. ++.+.+++.+. +.....+....+..+++.++++++.+.++ ...+
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~-------------l~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~ 115 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQ-------------AMVLPYASPWYMATSPAARLAEKIATLTP----GDLN 115 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHH-------------HHHCCCCCTTTCBCHHHHHHHHHHHTTSS----TTCC
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHH-------------HHhccCcccCccCCHHHHHHHHHHHhcCC----CCcC
Confidence 3468999877 66664 56677776653 12222222224567888999999887654 4567
Q ss_pred cEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCCcChHHHHhhhCC--------------CEEEEeeccCCCC
Q 043923 113 KIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGFDRDLKWRTG--------------VEIVPIQCTSLNG 170 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~~g--------------~~~~~v~~~~~~~ 170 (469)
.|++++|+++|+..++..+. ..++.|++.+|+|.++...+....| ...++.|.....
T Consensus 116 ~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 194 (476)
T 3i5t_A 116 RIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA- 194 (476)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-
T ss_pred EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-
Confidence 99999999999999999885 3367999999999987655433212 223333332111
Q ss_pred cccC--------HHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 171 FQIT--------ETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 171 ~~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
+..+ +++|++.+++.. ..++++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|.++...+.
T Consensus 195 ~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~ 272 (476)
T 3i5t_A 195 GNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE 272 (476)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred CCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC
Confidence 2223 678888776421 126677777766788885 88999999999999999999999999998543333
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh-------c--ccccCcHHHHHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM-------S--SFGLVSSQTQYL 311 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~-------~--~~~~~s~~~q~~ 311 (469)
. ........ ..+.++ ++||++| .| +|+|+++++ +.+.+.+... . ..+..+++++.+
T Consensus 273 ~-~~~~~~~~--------v~pdi~---t~sK~l~-~G~~plg~v~~~-~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aA 338 (476)
T 3i5t_A 273 W-FASEKVFG--------VVPDII---TFAKGVT-SGYVPLGGLAIS-EAVLARISGENAKGSWFTNGYTYSNQPVACAA 338 (476)
T ss_dssp S-CHHHHTTC--------CCCSEE---EECGGGG-TTSSCCEEEEEC-HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHH
T ss_pred c-eeeecccC--------CCcchh---hhhhhhc-CCCcCeEEEEEC-HHHHHHHhcCCcccccccccCCCCcCHHHHHH
Confidence 2 11110111 223333 6899998 69 999999994 4555544432 1 223467888888
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccC-Chh----HHHHHHHH
Q 043923 312 LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSN-TFE----AEMELWKK 382 (469)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~-~~~----~~~~l~~~ 382 (469)
+.++|+...- +...+.++++.+++.+.|++++ +....+.+ .|+++++....... .+. ....++..
T Consensus 339 a~aaL~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (476)
T 3i5t_A 339 ALANIELMER-----EGIVDQAREMADYFAAALASLRDLPGVAETRSVG-LVGCVQCLLDPTRADGTAEDKAFTLKIDER 412 (476)
T ss_dssp HHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEET-TEEEEEECCC-----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC-ceeEEEEecCccccccccchhHHHHHHHHH
Confidence 8888753211 2334555566666777776542 23334444 57777776421111 000 13355666
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcccc
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTL 435 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~~ 435 (469)
++ ++||.++|. .+++||++.. .+++++++++++|++++++..++.
T Consensus 413 l~-~~Gv~v~~~-------g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~~ 458 (476)
T 3i5t_A 413 CF-ELGLIVRPL-------GDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAH 458 (476)
T ss_dssp HH-HTTEECEEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH-HCCCEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 569999984 1689999654 499999999999999998877644
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=229.39 Aligned_cols=317 Identities=14% Similarity=0.071 Sum_probs=219.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc-----EEEeCChHHHHHHHHHHhcC--------CC-----CEEEEcc
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK-----IVLTAGATSANETLMFCLAE--------PG-----EAFLLPT 142 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~-----i~~t~G~~~al~~~~~~l~~--------~g-----d~Vl~~~ 142 (469)
.|....+..++++++.+++.+.+| ++.++ +++|+|+++++..++.++.. +| +.|+++.
T Consensus 72 ~~~~~~~~~~l~~~~~~~la~l~g----~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~ 147 (452)
T 2dgk_A 72 DKEEYPQSAAIDLRCVNMVADLWH----APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP 147 (452)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT----CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS
T ss_pred ChhhChhHHHHHHHHHHHHHHHhC----CCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC
Confidence 344555778889999888888776 44554 99999999999999888753 45 5899999
Q ss_pred CCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh
Q 043923 143 PYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE 222 (469)
Q Consensus 143 P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~ 222 (469)
+|..+...+... |++++.+|+++ ++|.+|+++|+++|++ ++++|++++|+||||.+.+. ++|.++|++
T Consensus 148 -~h~~~~~~~~~~-G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~l---~~I~~ia~~ 215 (452)
T 2dgk_A 148 -VQICWHKFARYW-DVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEFP---QPLHDALDK 215 (452)
T ss_dssp -CCHHHHHHHHHT-TCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCCH---HHHHHHHHH
T ss_pred -CcHHHHHHHHHc-CceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCCH---HHHHHHHHH
Confidence 999888888877 99999999874 3688999999999865 78999999999999999874 457888888
Q ss_pred c------CeEEEEecccccccc--CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-HHH
Q 043923 223 K------NIHLISDEIYSGTVF--SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-VVA 293 (469)
Q Consensus 223 ~------~~~iI~Deay~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-~~~ 293 (469)
+ |+++++|++|+.+.. -...... .+ . ..+..++..|++| |+++|.++||+++.++. +..
T Consensus 216 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~--~~-~--------~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~ 283 (452)
T 2dgk_A 216 FQADTGIDIDMHIDAASGGFLAPFVAPDIVW--DF-R--------LPRVKSISASGHK-FGLAPLGCGWVIWRDEEALPQ 283 (452)
T ss_dssp HHHHHCCCCCEEEECTTGGGTHHHHCTTCCC--ST-T--------STTEEEEEEETTT-TTCCCSSCEEEEESSGGGSCG
T ss_pred HhhccCCCCcEEEEcccHHHHHHhhCccchh--hc-C--------CCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHHH
Confidence 5 999999999987532 1111110 01 0 1244566779999 55689999999996553 212
Q ss_pred HHHHhcccc-----------cC---cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----
Q 043923 294 AATKMSSFG-----------LV---SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS---- 354 (469)
Q Consensus 294 ~~~~~~~~~-----------~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~---- 354 (469)
.+.....+. +. ..+.++++...+. .+.+++..+++.++++++.+.|+++ ++++..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 358 (452)
T 2dgk_A 284 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD 358 (452)
T ss_dssp GGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTT
T ss_pred HhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCC
Confidence 221111110 11 2344555544442 2345677788888999999999988 4877643
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
....++.+.++..... . .+..++.+.|. +.||.+....... ..+.+++|++++. .++++++++++.|+++++..+
T Consensus 359 ~~~~~v~f~~~~~~~~-~-~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 359 EGIPAVCFKLKDGEDP-G-YTLYDLSERLR-LRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp TBSSEEEEEECTTCCC-S-CCHHHHHHHHH-HTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCcccc-c-CCHHHHHHHHH-hcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3345666776532100 0 01135666665 5699765322111 1135689999986 478999999999999988776
Q ss_pred c
Q 043923 433 T 433 (469)
Q Consensus 433 ~ 433 (469)
+
T Consensus 436 ~ 436 (452)
T 2dgk_A 436 D 436 (452)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=220.15 Aligned_cols=291 Identities=13% Similarity=0.086 Sum_probs=204.1
Q ss_pred CCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEEccCCCcChHHHHhhhCCCEE
Q 043923 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL---AEPGEAFLLPTPYYPGFDRDLKWRTGVEI 160 (469)
Q Consensus 84 ~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~ 160 (469)
+.....++++++|++++ . +++++|+|+++|+..++.++ +++||.|+++.|+|..+...+... |+++
T Consensus 30 ~~~~~~~l~~~la~~~~--------~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~ 98 (375)
T 2fnu_A 30 QGKRSLLFEEALCEFLG--------V--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTP 98 (375)
T ss_dssp SSHHHHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEE
T ss_pred CChHHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHC-CCEE
Confidence 34467899999999985 2 38999999999999999999 889999999999999999888877 9999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+.+++++++ .+|++++++++++ ++++|++++| ||.+.+ +++|.++|++||+++|+||+|+......
T Consensus 99 ~~~~~~~~~--~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~ 164 (375)
T 2fnu_A 99 VFAGIKNDG--NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQ 164 (375)
T ss_dssp EECCBCTTS--SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET
T ss_pred EEeccCCCC--CCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeEC
Confidence 999987533 6889999887754 7888888876 999988 5568889999999999999998432211
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCc--cccCCCcceEEEEEe-cCHHHHHHHHHhccc---------------c
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLS--KDLGLPGFRVGAIYS-NDDMVVAAATKMSSF---------------G 302 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~GlRiG~li~-~~~~~~~~~~~~~~~---------------~ 302 (469)
. .. + . ..+ .+++.|+| |++|. | +|++++ +++.+.+.+...... +
T Consensus 165 ~--~~---~-~--------~~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T 2fnu_A 165 N--KK---V-G--------GFA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIG 226 (375)
T ss_dssp T--EE---T-T--------SSS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCC
T ss_pred C--ee---c-c--------ccC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCcccccccccccccc
Confidence 1 01 1 1 112 36677888 99974 6 678877 445555444433211 1
Q ss_pred ---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----C-ceEEEEEecccccccCCh
Q 043923 303 ---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS----N-AGLFCWVDMRHLLRSNTF 373 (469)
Q Consensus 303 ---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~----~-~g~~~~v~~~~~~~~~~~ 373 (469)
..+.+...++...+ . ++++..++++++++++.+.|+++ |+++.++ . .++++|+.++... .
T Consensus 227 ~~~~~~~~~~a~~~~~~---~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 295 (375)
T 2fnu_A 227 HNFRLNEIQSALGLSQL---K----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF----F 295 (375)
T ss_dssp CBCCCCHHHHHHHHHHH---T----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG----G
T ss_pred ccCCCCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc----c
Confidence 12232222222111 1 24566777788889999999987 7776654 1 2345577776310 0
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCCCCCC---------------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 374 EAEMELWKKIVYDVKLNISPGSSCHCT---------------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~f~~~---------------------~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+..++.+.|. ++||.++.+ |.+. ..+++||+++. .+++++++++++|++++++.
T Consensus 296 ~~~~~l~~~L~-~~gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 296 TCKKLILESLH-KRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp GGHHHHHHHHH-HTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HCCCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 02335666664 679999832 2110 12689999986 48999999999999998764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=228.00 Aligned_cols=323 Identities=11% Similarity=0.054 Sum_probs=206.7
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCC-CCcHHHHHHHHHHHHhHcCCCCCCC-CCcEE
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDY-HGLPAFKKALVEFMSEIRGNKVTFD-TSKIV 115 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~Lr~aia~~l~~~~~~~~~~~-~~~i~ 115 (469)
+++++++.+..+.++ .+.+++.+.... . ......|+.. ....++++.++++++ ++ +++|+
T Consensus 39 ~~~~~~~~~~~~~~~-~v~~a~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~i~ 100 (398)
T 2fyf_A 39 PRDGRFGSGPSKVRL-EQLQTLTTTAAA-L--------FGTSHRQAPVKNLVGRVRSGLAELFS--------LPDGYEVI 100 (398)
T ss_dssp CSSCBCCSSSCCCCH-HHHHGGGTTTTT-T--------TTSCTTSHHHHHHHHHHHHHHHHHTT--------CCTTCEEE
T ss_pred cCCccccCCCCCCCH-HHHHHHhhcCCC-c--------cCcCcCCHHHHHHHHHHHHHHHHHhC--------CCCCceEE
Confidence 356788876655444 455555442100 0 0101223211 123455666666554 44 46899
Q ss_pred E-eCChHHHHHHHHHHhcCCCCEEEEccCCCcCh-HHHHhhh-CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 116 L-TAGATSANETLMFCLAEPGEAFLLPTPYYPGF-DRDLKWR-TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 116 ~-t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~-~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+ |+|+++++.+++.+++++| .+.+..+.|... ...+... .|.+++.++.+ .++..+.+ ++ +++
T Consensus 101 ~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~~-----i~------~~~ 166 (398)
T 2fyf_A 101 LGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEPQ-----TD------PSV 166 (398)
T ss_dssp EEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCCC-----CC------TTC
T ss_pred EeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCcc-----cc------CCC
Confidence 8 9999999999999998887 223333333211 1122221 16788888876 33434321 22 378
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|++++|+||||.+++.+++.++ +|+++|+||+|+.+ ..+ .. + . +..+++.|+||
T Consensus 167 ~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~---~~~-~~---~-~----------~~di~~~s~sK 222 (398)
T 2fyf_A 167 DVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAG---GLP-VD---I-A----------ETDAYYFAPQK 222 (398)
T ss_dssp SEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTT---TSC-CC---G-G----------GCSEEEECTTS
T ss_pred CEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccC---Ccc-cC---c-c----------cCcEEEEecCc
Confidence 999999999999999998886654 89999999999842 111 11 1 1 23477889999
Q ss_pred ccCCCcceEEEEEecCHHHHHHHHHh-----------------------cccccCcHHHHHHHHHHhcCchhhHHH--HH
Q 043923 273 DLGLPGFRVGAIYSNDDMVVAAATKM-----------------------SSFGLVSSQTQYLLSALLSDKKFTQNY--IS 327 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~~~~~~~~~~-----------------------~~~~~~s~~~q~~~~~~l~~~~~~~~~--~~ 327 (469)
++|.+| ++||++++++.+.. +... ..+++.+...+.++.++++.. .+. ++
T Consensus 223 ~~~~~g-g~g~l~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~g~~~ 297 (398)
T 2fyf_A 223 NFASDG-GLWLAIMSPAALSR-IEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWL---VGNGGLD 297 (398)
T ss_dssp TTCSCS-SEEEEEECHHHHHH-HHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---HHHTSHH
T ss_pred ccCCCC-ceEEEEECHHHHHH-hhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HHccCHH
Confidence 999775 69999996554432 2110 122345666666666666431 222 67
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCceec--C--CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 328 ENKKRLKQRHRKLVSGLEKA-GISCLK--S--NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 328 ~~~~~l~~~~~~l~~~L~~~-g~~v~~--~--~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
+.+++++++++++.+.|+++ |+++.. + .+++++|+.++... +..++.+.|.++ ||.+++|. ...+.
T Consensus 298 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~-gI~v~~g~--~~~~~ 368 (398)
T 2fyf_A 298 WAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV------DAGTVAKILRAN-GIVDTEPY--RKLGR 368 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS------CHHHHHHHHHHT-TCBCCSCC--TTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC------CHHHHHHHHHHC-CcEEecCc--ccCCC
Confidence 77888899999999999988 787763 3 34558999986421 223566776654 99999873 22235
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 403 GWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 403 ~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+++||+++. .+++++++++++|++++++
T Consensus 369 ~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 369 NQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 799999985 4899999999999998764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-25 Score=220.99 Aligned_cols=279 Identities=15% Similarity=0.176 Sum_probs=195.8
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~ 162 (469)
...+|++++|++++ . +++++++++++|+..++.+++++||.|+++.|+|.++... +... |++++.
T Consensus 60 ~~~~l~~~la~~~g--------~--~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~-g~~~~~ 128 (389)
T 3acz_A 60 TVEQFEEMVCSIEG--------A--AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDL 128 (389)
T ss_dssp HHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEE
Confidence 46789999999985 2 2566667778999999999999999999999999987665 3555 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.. |++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+. .
T Consensus 129 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~-~- 190 (389)
T 3acz_A 129 IDTS-------DVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL-K- 190 (389)
T ss_dssp ECTT-------CHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-C-
T ss_pred ECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc-C-
Confidence 9852 78889888764 7899999999999999998 566888999999999999999865321 1
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhcc-cc-cCcHHHHHHHHHHhcCc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSS-FG-LVSSQTQYLLSALLSDK 319 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~~~l~~~ 319 (469)
+ . ..+.++++.|+||.+|.+|.|+ ||+++++..+.+.+..... ++ ..++..+.++.+.++..
T Consensus 191 --~-~------------~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l 255 (389)
T 3acz_A 191 --P-L------------ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL 255 (389)
T ss_dssp --G-G------------GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred --c-c------------ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHH
Confidence 1 1 1256788999999999999998 9999977244444433322 22 34566666666666542
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC---------------Cceec---CCceEEEEEecccccccCChhHHHHHHH
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKAG---------------ISCLK---SNAGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~g---------------~~v~~---~~~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
..+.++..++.+.+.+.|++++ +++.. ...|.++.+.+++ . +...
T Consensus 256 -------~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---~-------~~~~ 318 (389)
T 3acz_A 256 -------PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---F-------EAAK 318 (389)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---H-------HHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---H-------HHHH
Confidence 2233444455566666676642 11111 1123466677753 0 2345
Q ss_pred HHHHhCCeEEeC---C------CCCCC---------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 382 KIVYDVKLNISP---G------SSCHC---------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 382 ~ll~~~GI~v~p---g------~~f~~---------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
.++.+.||.+++ | ..+.. ..++++|+|++. ++++.+++.|.++++
T Consensus 319 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 319 KLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp HHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred HHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 667778998877 3 22211 125799999985 467788888888775
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-25 Score=221.79 Aligned_cols=283 Identities=14% Similarity=0.157 Sum_probs=196.7
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~ 162 (469)
...+|++.+|++++ . .+.|++++|+ +|+..++.+++++||.|+++.|.|.++... +... |++++.
T Consensus 115 ~~~~l~~~lA~l~g--------~-~~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~v~~ 183 (445)
T 1qgn_A 115 TTVVLEEKISALEG--------A-ESTLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATV 183 (445)
T ss_dssp HHHHHHHHHHHHHT--------C-SEEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGG-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------C-CcEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEE
Confidence 35689999999885 2 2556666665 999999999999999999999999987663 4455 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCce-eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKV-KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~-~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
++.+ |++++++++++ ++ ++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+..++. .
T Consensus 184 v~~~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~-~ 246 (445)
T 1qgn_A 184 IDPA-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ-K 246 (445)
T ss_dssp ECSS-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C
T ss_pred eCCC-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-C
Confidence 8853 78999999986 67 99999999999999998 556888999999999999999854221 1
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh-ccccc-CcHHHHHHHHHHhcC
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM-SSFGL-VSSQTQYLLSALLSD 318 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~-~~~~~-~s~~~q~~~~~~l~~ 318 (469)
. . ..+..++++|+||.+|..| +++||+++++. +.+.+... ..++. .+++..+++.+.++.
T Consensus 247 ---~-~------------~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~-l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~ 309 (445)
T 1qgn_A 247 ---A-L------------ALGADLVLHSATKFLGGHNDVLAGCISGPLK-LVSEIRNLHHILGGALNPNAAYLIIRGMKT 309 (445)
T ss_dssp ---T-T------------TTTCSEEEECTTTTTTCSSSCCCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHGGG
T ss_pred ---c-c------------ccCCEEEEECCcccccccccceEEEEEECHH-HHHHHHHHHHHhCCCCCHHHHHHHHHhHHH
Confidence 1 1 1245688999999998554 47999999654 43333332 22332 345544444444432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ceecC----------------CceEEEEEecccccccCChhHHHHHH
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA-GI-SCLKS----------------NAGLFCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~-~v~~~----------------~~g~~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
+..+.+++.++.+.+.+.|+++ ++ .+..| ..|.++++.+++.. .+...++
T Consensus 310 -------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-----~~~~~~l 377 (445)
T 1qgn_A 310 -------LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-----LTTAKFV 377 (445)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-----HHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-----HHHHHHH
Confidence 2334455566678888889877 44 34332 13567788887410 1122233
Q ss_pred HHHHHhCCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 381 KKIVYDVKLNISPGSSCHC---------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~---------------------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
.. ++..++.+..|..+.. ..++.||||++ .|+++.+++.|+++++.
T Consensus 378 ~~-l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG---~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 378 DA-LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS 444 (445)
T ss_dssp HH-CSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred Hh-CCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 32 3334787777765421 12479999998 36799999999998864
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=216.75 Aligned_cols=284 Identities=19% Similarity=0.231 Sum_probs=194.6
Q ss_pred cCCCC--CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hh
Q 043923 81 LFQDY--HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KW 154 (469)
Q Consensus 81 ~Y~~~--~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~ 154 (469)
.|+.. ....++++.++++++ .+++++++|+++|+..++.+++++||.|+++.|.|..+...+ ..
T Consensus 49 ~y~~~~~~~~~~l~~~la~~~g----------~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 49 VYARQKDPTAKALEERLKALEG----------ALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred CcCCCCChHHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 45533 357888888988885 348999999999999999999999999999999998765543 33
Q ss_pred hCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 155 RTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 155 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
. |++++.++. |++++++++++ ++++|++++|+||||.+.+ +++|.++|++||+++|+||+|+
T Consensus 119 ~-g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 119 M-GVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp T-TCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred c-CCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence 5 999998874 36888887754 7899999999999999997 6668999999999999999998
Q ss_pred ccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecC-H------------------------
Q 043923 235 GTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSND-D------------------------ 289 (469)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~-~------------------------ 289 (469)
.+.+... . . ..+.++++.|+||.++.+|.|+|++++.+ .
T Consensus 181 ~~~~~~~---~---~----------~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 244 (412)
T 2cb1_A 181 AAGALCR---P---L----------AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALR 244 (412)
T ss_dssp TTTTSCC---G---G----------GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHG
T ss_pred cccccCC---c---c----------ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccc
Confidence 5311111 1 1 12567889999999988999999988654 2
Q ss_pred --HHHHHHHHh--cccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee-cC--------
Q 043923 290 --MVVAAATKM--SSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL-KS-------- 354 (469)
Q Consensus 290 --~~~~~~~~~--~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-~~-------- 354 (469)
.+.+.++.. ..++ ..++...+++...++. +....++..+..+++.+.|.+. ++.+. .|
T Consensus 245 ~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~ 317 (412)
T 2cb1_A 245 ARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAH 317 (412)
T ss_dssp GGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTH
T ss_pred hHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccH
Confidence 222222222 1122 1234443333333322 2333444556778888888876 67633 22
Q ss_pred --------CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC---------CCCC---------------CCC
Q 043923 355 --------NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS---------SCHC---------------TEP 402 (469)
Q Consensus 355 --------~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~---------~f~~---------------~~~ 402 (469)
..+.++.+.+ + .. +.+...+.+.||.+ .++ .+.. ..+
T Consensus 318 ~~~~~~~~~~~~iv~~~~-~--~~-------~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~ 386 (412)
T 2cb1_A 318 RNARKYLASGGPILTLDL-G--DL-------ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTP 386 (412)
T ss_dssp HHHHHHCSSSCSEEEEEC-S--SH-------HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCT
T ss_pred HHHHHhCCCCceEEEEEe-C--CH-------HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCC
Confidence 2345666777 3 11 23455666789998 774 2210 015
Q ss_pred CeEEEEeecC-CHHHHHHHHHHHHH
Q 043923 403 GWFRVCFANM-SEDTLKLSMQRLKA 426 (469)
Q Consensus 403 ~~iRi~~~~~-~~e~i~~~l~~L~~ 426 (469)
+.+|+|++.. ++++++.++++|++
T Consensus 387 ~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 387 GLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CeEEEEeccCCHHHHHHHHHHHHhh
Confidence 7999999863 56677776666653
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-25 Score=221.08 Aligned_cols=282 Identities=15% Similarity=0.135 Sum_probs=188.6
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~~g~~~~~ 162 (469)
...+|++++|++++ .+ ++++++++++|+..++. ++++||.|+++.|.|.+... .++.. |++++.
T Consensus 56 ~~~~lr~~la~~~g--------~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~v~~ 123 (393)
T 1n8p_A 56 NRENLERAVAALEN--------AQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAH-GVETSF 123 (393)
T ss_dssp HHHHHHHHHHHHTT--------CS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTT-CSCCEE
T ss_pred hHHHHHHHHHHHhC--------CC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHc-CcEEEE
Confidence 56899999999985 22 45555556999999999 88999999999999985544 34445 999998
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc----CeEEEEecccccccc
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK----NIHLISDEIYSGTVF 238 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~----~~~iI~Deay~~~~~ 238 (469)
+|.+ | +++++++++ ++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|+.+.+
T Consensus 124 v~~~-------d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp ESSH-------H-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred eCCC-------h-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 8864 5 777777653 7899999999999999998 56688899999 999999999987644
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHHHHHHHHhcc-cc-cCcHHHHHHHHHH
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSS-FG-LVSSQTQYLLSAL 315 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~~~ 315 (469)
. ....+ +.++++.|+||.+|.+|+|+ ||++++++.+.+.+..... ++ ..++..+.++...
T Consensus 187 ~-----~~~~~------------~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 249 (393)
T 1n8p_A 187 S-----NPLNF------------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRG 249 (393)
T ss_dssp C-----CGGGG------------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred C-----CHHHc------------CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 2 11112 46788999999999899999 9999854555444433322 22 2455555555555
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC--Cc-eecC---------------C--c-eEEEEEecccccccCChh
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG--IS-CLKS---------------N--A-GLFCWVDMRHLLRSNTFE 374 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g--~~-v~~~---------------~--~-g~~~~v~~~~~~~~~~~~ 374 (469)
+.. +..+.++..++.+.+.+.|++.. +. +..+ . . |.++++.+++. ..
T Consensus 250 l~~-------~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-----~~ 317 (393)
T 1n8p_A 250 LKT-------LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-----AE 317 (393)
T ss_dssp HTT-------HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-----HH
T ss_pred cch-------HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-----HH
Confidence 543 23444555666677777777653 22 2111 1 2 56788888641 01
Q ss_pred HHHHHHHHHHHhCCeEEeCCC----------CCC-----------CCCCCeEEEEeecC-CHHHHHHHHHHHHHH
Q 043923 375 AEMELWKKIVYDVKLNISPGS----------SCH-----------CTEPGWFRVCFANM-SEDTLKLSMQRLKAF 427 (469)
Q Consensus 375 ~~~~l~~~ll~~~GI~v~pg~----------~f~-----------~~~~~~iRi~~~~~-~~e~i~~~l~~L~~~ 427 (469)
+...++.. ++..++.+..|+ .+. ...++.+|+|++.. ++++++.+.++|+++
T Consensus 318 ~~~~~l~~-l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 318 AASKFASS-TRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHHHHHH-CSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-CCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 22223332 233355544342 221 01247899999863 566666666666654
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-25 Score=224.95 Aligned_cols=332 Identities=11% Similarity=0.042 Sum_probs=203.6
Q ss_pred CCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+. +++ +++.+.+++.+... ....| .+..++++++++++.+.++ .++
T Consensus 56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~-------------~~~~~---~~~~~~~~~la~~l~~~~~-----~~~ 114 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALS-------------HGVQY---AASHPLEVRWAERIVAAFP-----SIR 114 (453)
T ss_dssp CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT-------------TTCSS---CSSCHHHHHHHHHHHHHCT-----TCS
T ss_pred CCEEEECcccHhhcccCCCCHHHHHHHHHHHH-------------hCCCC---CCCCHHHHHHHHHHHhhCC-----CCC
Confidence 34689998885 434 45667777665311 11122 2357899999999987743 578
Q ss_pred cEEEeCChHHHHHHHHHH---hcCCCCEEEEccCCCcChHHHHhhh----------CCCE------EEEeeccCCCCccc
Q 043923 113 KIVLTAGATSANETLMFC---LAEPGEAFLLPTPYYPGFDRDLKWR----------TGVE------IVPIQCTSLNGFQI 173 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~---l~~~gd~Vl~~~P~y~~~~~~~~~~----------~g~~------~~~v~~~~~~~~~~ 173 (469)
+|++++|+++|+..++++ +.++ +.|++.+|+|+++...+... .|+. ++.++. .
T Consensus 115 ~v~~~~gg~eA~~~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~ 186 (453)
T 2cy8_A 115 KLRFTGSGTETTLLALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------D 186 (453)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHCC-CEEEEECC----------------------------CGGGEEEECT-------T
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------C
Confidence 999999999999999988 6554 67888889998765433211 0221 223332 3
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhh
Q 043923 174 TETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 251 (469)
Q Consensus 174 d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~ 251 (469)
|++++++++++. ++++++ ++++| +||||.++ +.+++++|.++|++||++||+||+|.++ ..+.. .. .+...
T Consensus 187 d~~~le~~l~~~---~~~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~-~~~~~ 259 (453)
T 2cy8_A 187 DIEGMREVFANH---GSDIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH-GM-QALLD 259 (453)
T ss_dssp CHHHHHHHHHHH---GGGEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTT-HH-HHHHT
T ss_pred CHHHHHHHHHhc---CCCEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCch-hh-hHHhC
Confidence 789999988742 125665 55666 46799764 7999999999999999999999999975 33321 11 11111
Q ss_pred ccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-------hcccccCcHHHHHHHHHHhcC-chhhH
Q 043923 252 DRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-------MSSFGLVSSQTQYLLSALLSD-KKFTQ 323 (469)
Q Consensus 252 ~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~-~~~~~ 323 (469)
....+ .|+||++| +|+|+||+++++ .+.+.+.. ....+..+++++.++.++|+. . .
T Consensus 260 --------~~~di---~s~sK~l~-~G~~~G~v~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~-- 323 (453)
T 2cy8_A 260 --------VQPDL---TCLAKASA-GGLPGGILGGRE-DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E-- 323 (453)
T ss_dssp --------CCCSE---EEEEGGGG-TTSSCEEEEECH-HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H--
T ss_pred --------CCCcE---EEEChhhh-CCcceEEEechH-HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h--
Confidence 11222 38999998 699999999964 44333322 111234677888777776654 2 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEeccc-----c-----ccc---CChhHHHHHHHHHHHh
Q 043923 324 NYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRH-----L-----LRS---NTFEAEMELWKKIVYD 386 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~g~~~~v~~~~-----~-----~~~---~~~~~~~~l~~~ll~~ 386 (469)
+...++++++++++.+.|++ +++....+..|.|+|+.++. . ... .......+++..++ +
T Consensus 324 ---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 399 (453)
T 2cy8_A 324 ---DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-L 399 (453)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-H
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-H
Confidence 12233444455555555544 35533223345788998874 1 000 01122345677776 5
Q ss_pred CCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 387 VKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 387 ~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+||.+.|+ +.+|+++. .+++++++++++|++++++..+
T Consensus 400 ~Gv~v~~~--------~~~~l~~~-~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 400 EGVDIGGR--------GSVFLSAQ-HEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp TTEECBTT--------TEEECCTT-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEeCC--------CCEEeecc-CCHHHHHHHHHHHHHHHHHHHh
Confidence 69999653 23777644 5999999999999999987644
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-25 Score=224.11 Aligned_cols=333 Identities=15% Similarity=0.116 Sum_probs=207.5
Q ss_pred CCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||++.+. +++ +++.+.+++.+.. .....|. +..++++++++.+.+.++ .++
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~-------------~~~~~~~---~~~~~~~~l~~~la~~~~-----~~~ 113 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEAL-------------ARGWLYG---APGEAEVLLAEKILGYVK-----RGG 113 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------HTCSCCS---SCCHHHHHHHHHHHHHHC-----TTC
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHH-------------HhCCCCC---CCCHHHHHHHHHHHHhCC-----CCC
Confidence 34689998876 444 3566766666531 1111121 123444445555544432 468
Q ss_pred cEEEeCChHHHHHHHHHH---hcCCCCEEEEccCCCcChHHHHhh-------------hCCC------EEEEeeccCCCC
Q 043923 113 KIVLTAGATSANETLMFC---LAEPGEAFLLPTPYYPGFDRDLKW-------------RTGV------EIVPIQCTSLNG 170 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~---l~~~gd~Vl~~~P~y~~~~~~~~~-------------~~g~------~~~~v~~~~~~~ 170 (469)
+|++++|+++|+..++++ +. +++.|++.+|+|+++...+.. ..|+ +++.+|.
T Consensus 114 ~v~~~~sgseA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 187 (434)
T 2epj_A 114 MIRFVNSGTEATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY----- 187 (434)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----
T ss_pred EEEEeCCHHHHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----
Confidence 999999999999999987 54 456788889999875443211 0132 2455553
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 171 FQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 171 ~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
.|++++++++++. +.++++ |+++| +||||.++ +.+.+++|.++|++||+++|+||+|.++ ..+.. ...+
T Consensus 188 --~d~~~le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~--~~~~ 258 (434)
T 2epj_A 188 --NDVEALERVFAEY---GDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLE--GAQG 258 (434)
T ss_dssp --TCHHHHHHHHHHH---GGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTT--HHHH
T ss_pred --CCHHHHHHHHHhC---CCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcc--hhhH
Confidence 2789999988752 125555 55566 56799876 7999999999999999999999999975 22221 1111
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----cccccCcHHHHHHHHHHhcCchhhH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
... .... +.||||++| +|+|+||+++++ .+.+.+... ...+..+++++.++.++|+...
T Consensus 259 ~~~--------~~~d---i~s~sK~l~-~G~~~G~v~~~~-~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~--- 322 (434)
T 2epj_A 259 YFN--------IEGD---IIVLGKIIG-GGFPVGAVAGSR-EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE--- 322 (434)
T ss_dssp HHT--------CCCS---EEEEEGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH---
T ss_pred HhC--------CCCC---eeeecchhc-CCcceeeeeecH-HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH---
Confidence 211 1122 248999999 599999999964 444433321 1122367778877777765321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccc-ccc------CChhHHHHHHHHHHHhCCeEEe
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHL-LRS------NTFEAEMELWKKIVYDVKLNIS 392 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~-~~~------~~~~~~~~l~~~ll~~~GI~v~ 392 (469)
+ +...++++++++++.+.|+++ ++....+..|.|+|+.++.. ... .......+++..++ ++||.+.
T Consensus 323 ~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~ 399 (434)
T 2epj_A 323 E--EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIA 399 (434)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECC
T ss_pred h--cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEe
Confidence 1 223445555566666666553 55432223457888988641 000 01122345666666 5699999
Q ss_pred CCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 393 PGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 393 pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
||.. ..+|+++. .+++++++++++|++++++.
T Consensus 400 ~~~~------~~~~~~~~-~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 400 PSNL------EAVFTGLP-HQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp SSTT------SCEECCTT-CSHHHHHHHHHHHHHHHHHH
T ss_pred ccCC------CcEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence 8742 24677654 59999999999999998765
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-25 Score=221.74 Aligned_cols=329 Identities=14% Similarity=0.105 Sum_probs=208.7
Q ss_pred CCCeeeeeccc--ccc--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAE--NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+|||+.+. +++ +++.+.+++.+.. .....|. +..++++++++.+.+.++ .++
T Consensus 51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~---~~~~~~~~l~~~l~~~~~-----~~~ 109 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGHAHPKVLARVRETL-------------ERGLTFG---APSPLEVALAKKVKRAYP-----FVD 109 (424)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------HTCSCCS---SCCHHHHHHHHHHHHHCT-----TCC
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHH-------------HhCCCCC---CCCHHHHHHHHHHHHhCC-----CCC
Confidence 34579998876 554 3566777766531 1111222 224566666666665532 478
Q ss_pred cEEEeCChHHHHHHHHHH---hcCCCCEEEEccCCCcChHHHHhhh-------------CCC------EEEEeeccCCCC
Q 043923 113 KIVLTAGATSANETLMFC---LAEPGEAFLLPTPYYPGFDRDLKWR-------------TGV------EIVPIQCTSLNG 170 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~---l~~~gd~Vl~~~P~y~~~~~~~~~~-------------~g~------~~~~v~~~~~~~ 170 (469)
+|++++|+++|+..+++. +.+ ++.|++.+|+|+++...+... .|+ +++.+|.
T Consensus 110 ~v~~~~~g~ea~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 183 (424)
T 2e7u_A 110 LVRFVNSGTEATMSALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY----- 183 (424)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----
Confidence 999999999999999886 544 577899999998865432210 132 3444443
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEecCCCC-CCCCC-CHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 171 FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP-LGTTM-SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 171 ~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NP-tG~~~-s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
.|++++++++++. +.+++ +++++|+|+ ||.++ +.+.+++|.++ ++||+++|+||+|.++ ..+.. ...+
T Consensus 184 --~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~--~~~~ 253 (424)
T 2e7u_A 184 --NDPEGLREVLKRR---GEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG--GATE 253 (424)
T ss_dssp --TCHHHHHHHHHHH---GGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT--HHHH
T ss_pred --CCHHHHHHHHHhC---CCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh--HHHH
Confidence 2789999988742 11454 566778765 89765 79999999999 9999999999999975 32221 1112
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-h----cccccCcHHHHHHHHHHhcCchhhH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-M----SSFGLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-~----~~~~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
... ...++ .|+||++| +|+|+||+++++ .+.+.+.. . ...+..+++++.++.++|+.. .
T Consensus 254 ~~~--------~~~di---~s~sK~l~-~G~~~G~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~ 317 (424)
T 2e7u_A 254 LLG--------LKPDL---VTLGKILG-GGLPAAAYAGRR-EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL---E 317 (424)
T ss_dssp HHT--------CCCSE---EEECGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH---H
T ss_pred HhC--------CCcch---hhhhhhhh-CCcceEEEEEcH-HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH---H
Confidence 211 11232 39999999 699999999965 44443333 1 112246778888877777532 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCce-ecCCceEEEEEeccccc-c------cCChhHHHHHHHHHHHhCCeEE
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKA----GISC-LKSNAGLFCWVDMRHLL-R------SNTFEAEMELWKKIVYDVKLNI 391 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~----g~~v-~~~~~g~~~~v~~~~~~-~------~~~~~~~~~l~~~ll~~~GI~v 391 (469)
+ .++..++++++++++.+.|+++ ++.. .++. |.|+|++++... . ........+++..++ ++||.+
T Consensus 318 ~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v 394 (424)
T 2e7u_A 318 E-NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYW 394 (424)
T ss_dssp H-CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEEC
T ss_pred h-ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEE
Confidence 1 1334555566666666666553 5532 3343 468899986410 0 001122345666666 679999
Q ss_pred eCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 392 SPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 392 ~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
.||.. ..+|+++. .+++++++++++|++++
T Consensus 395 ~~~~~------~~~~~~~~-~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 395 PPSNF------EAAFLSVA-HREEDVEKTLEALRKAL 424 (424)
T ss_dssp CSSSS------SCEECCTT-CCHHHHHHHHHHHHHHC
T ss_pred eccCC------CceEeecc-CCHHHHHHHHHHHHHhC
Confidence 98752 24777754 59999999999998763
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=221.28 Aligned_cols=338 Identities=11% Similarity=0.041 Sum_probs=200.0
Q ss_pred CCCCeeeeeccc--cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 36 NPTGIIQMGLAE--NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 36 ~~~~~i~L~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
....+||++.+. +++. ++.+.+++.+.... .....|+ .....+|.+.+++++ + .+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~-----------~~~~~~~-~~~~~~la~~l~~~~----~-----~~ 109 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER-----------GLSFGAP-TEMEVKMAQLVTDLV----P-----TM 109 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT-----------CSCCSSC-CHHHHHHHHHHHHHS----T-----TC
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHh-----------CcccCCC-CHHHHHHHHHHHhhC----C-----CC
Confidence 345689998875 4443 46666666653111 0011232 222344555555443 2 47
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------------------EEEEeeccCCCC
Q 043923 112 SKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV-------------------EIVPIQCTSLNG 170 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~-------------------~~~~v~~~~~~~ 170 (469)
++|++++|+++|+..+++... .+++.|++..+.|+++...+....+. .+..++.
T Consensus 110 ~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 184 (429)
T 4e77_A 110 DMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY----- 184 (429)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-----
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-----
Confidence 899999999999999998543 35678999999998765422111011 1122221
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC--CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhh
Q 043923 171 FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT--MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIME 248 (469)
Q Consensus 171 ~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~--~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~ 248 (469)
.|++++++++++. +.+++ +|+++|+||+|-+ .+.+.+++|.++|++||+++|+||+|.++ ..+.. ...+
T Consensus 185 --~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~--~~~~ 255 (429)
T 4e77_A 185 --NDLASVRQAFEQY---PQEVA-CIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALA--GAQD 255 (429)
T ss_dssp --TCHHHHHHHHHHS---TTTEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTT--CHHH
T ss_pred --CCHHHHHHHHHhc---CCCEE-EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcc--hHHH
Confidence 1789999888742 12444 5667887765533 34556999999999999999999999975 33221 1122
Q ss_pred hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-----hcccccCcHHHHHHHHHHhcCchhhH
Q 043923 249 ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
... ....+ .|+||++| +|+|+||++++ +.+.+.+.. ....+..+++++.++.++|+.... .
T Consensus 256 ~~~--------~~pdi---~t~sK~~~-~G~~~G~~~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 321 (429)
T 4e77_A 256 YYH--------VIPDL---TCLGKIIG-GGMPVGAFGGR-REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-V 321 (429)
T ss_dssp HTT--------CCCSE---EEEEGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-T
T ss_pred hcC--------CCCCe---eeeccccc-CCCCeEEEEEC-HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 211 11222 38999999 89999999995 444443332 112234678888887777652211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccC--------ChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSN--------TFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~--------~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
+.+++.++.....++.|.+.+.++++....+..|+|+|+.++...... ......+++..++ ++||.+.|+.
T Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~ 400 (429)
T 4e77_A 322 GVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLML-EEGVYLAPSA 400 (429)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHH-HTTEECCSST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHH-HCCeEEeecC
Confidence 123333333333334444444555655444455688999987531100 1122245666666 5599999874
Q ss_pred CCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 396 SCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 396 ~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
. ..+|+++. .+++++++++++|++++++
T Consensus 401 ~------~~~~~~~~-~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 401 F------EAGFMSLA-HSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp T------SCEECCTT-CCHHHHHHHHHHHHHHHTT
T ss_pred C------CCEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 2 34666644 5999999999999999864
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=225.21 Aligned_cols=317 Identities=11% Similarity=0.055 Sum_probs=218.5
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE---EeCChHHHHHHHHHHhcCC--------CC-----EEEEccCCC
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV---LTAGATSANETLMFCLAEP--------GE-----AFLLPTPYY 145 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~---~t~G~~~al~~~~~~l~~~--------gd-----~Vl~~~P~y 145 (469)
|....+..++++.+.+++.+.+| ++.+++++. +|+|+++++..++.++..+ |+ .|+++.++|
T Consensus 87 ~~~~p~~~~le~~~~~~la~l~g--~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h 164 (502)
T 3hbx_A 87 MDEYPVTTELQNRCVNMIAHLFN--APLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQ 164 (502)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--CCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCC
T ss_pred hhcChhHHHHHHHHHHHHHHHhC--CCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCch
Confidence 33344567888888888888776 222255544 5999999999998887655 76 899999999
Q ss_pred cChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--
Q 043923 146 PGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK-- 223 (469)
Q Consensus 146 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~-- 223 (469)
..+...+... |++++.+|+++ +++.+|++++++++++ ++++|++++|+||||.+.+.++ |.++|+++
T Consensus 165 ~s~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~---I~~ia~~~~~ 233 (502)
T 3hbx_A 165 VCWEKFARYF-EVELKEVKLSE-GYYVMDPQQAVDMVDE------NTICVAAILGSTLNGEFEDVKL---LNDLLVEKNK 233 (502)
T ss_dssp HHHHHHHHHT-TCEEEEECCBT-TBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTCCBCCHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHc-CceeEEEecCC-CcCcCCHHHHHHHHhh------CCEEEEEecCCCCCCcccCHHH---HHHHHHHhhh
Confidence 9999888877 99999999874 4588999999999875 7899999999999999988555 77788888
Q ss_pred ----CeEEEEecccccccc--CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHH-HHHH
Q 043923 224 ----NIHLISDEIYSGTVF--SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVV-AAAT 296 (469)
Q Consensus 224 ----~~~iI~Deay~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~-~~~~ 296 (469)
|+++++|++|+++.. -......... ..+..++..|.+|.++ ++.++|++++.+.... ..+.
T Consensus 234 ~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~-----------~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~ 301 (502)
T 3hbx_A 234 ETGWDTPIHVDAASGGFIAPFLYPELEWDFR-----------LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELI 301 (502)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-----------STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGC
T ss_pred ccCCCCeEEEECCccchhhhhhCcccccccC-----------CCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhc
Confidence 999999999986431 1111111011 1245666779999774 7788999988654332 2111
Q ss_pred Hhccc-----------cc---CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CceecC-CceEEE
Q 043923 297 KMSSF-----------GL---VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKS-NAGLFC 360 (469)
Q Consensus 297 ~~~~~-----------~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~-~~g~~~ 360 (469)
....+ +. ...+.++++...+.. +.+....++..+..+++.+.|++++ +++..+ ....++
T Consensus 302 ~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v 376 (502)
T 3hbx_A 302 FHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH-----EGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLV 376 (502)
T ss_dssp EEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEE
T ss_pred cCcccccCCCCCccccCCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEE
Confidence 11111 00 123344444444432 2245666777778889999999985 887765 445677
Q ss_pred EEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 361 WVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 361 ~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++.++.... .+..++.+.| .+.||.+....... ..+..++|++++. .++++++.+++.|++++++.++
T Consensus 377 ~f~~~~~~~----~~~~~l~~~L-~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 377 AFSLKDSSC----HTEFEISDML-RRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp EEEESSCSS----CCHHHHHHHH-HTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCc----CCHHHHHHHH-HhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 788764211 1122455555 46799875433221 1234689999986 5899999999999999987766
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=217.79 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=201.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVE 159 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~ 159 (469)
.|.+..+..++++++|++++ .+++++++|+++|+..++.++ .++||.|+++.|+|..+...+... |++
T Consensus 30 ~~~~~~~~~~l~~~la~~~~----------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~-G~~ 98 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVG----------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALL-GAK 98 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred CccCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 45556678999999999986 348999999999999999999 899999999999999999888877 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc-cc
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT-VF 238 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~-~~ 238 (469)
++.++++++ .+.+|++++++++++ ++++|+ |+||||...+ +++|.++|++||+++|+|++|+.. .+
T Consensus 99 ~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~ 165 (367)
T 3nyt_A 99 PVYVDIDPR-TYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASY 165 (367)
T ss_dssp EEEECBCTT-TCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEE
T ss_pred EEEEecCCc-cCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeE
Confidence 999998753 478899999988754 788766 8889998776 555888899999999999999732 22
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccC--ccccCCCcceEEEEEecCHHHHHHHHHhccc--------------c
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSL--SKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--------------G 302 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--------------~ 302 (469)
++.. .. ..+ .+++.|| +|.+|.+|. .|+++++++.+.+.+...... .
T Consensus 166 ~~~~---~~------------~~~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~ 228 (367)
T 3nyt_A 166 KGKR---SC------------NLS-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNS 228 (367)
T ss_dssp TTEE---TT------------SSS-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBC
T ss_pred CCee---cc------------CCC-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCC
Confidence 2211 10 112 4777887 899985587 899999777776665544321 2
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC-Cce---E-EEEEecccccccCChhHHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS-NAG---L-FCWVDMRHLLRSNTFEAEM 377 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~-~~g---~-~~~v~~~~~~~~~~~~~~~ 377 (469)
..+.+...++...+.. +++..++.++..+++.+.|++.++.+... .++ + ++.+.++. ..
T Consensus 229 ~~~~~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 292 (367)
T 3nyt_A 229 RLDTLQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDN---------RE 292 (367)
T ss_dssp CCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECSS---------HH
T ss_pred CccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeCC---------HH
Confidence 2445555554444432 23344455556677888888876554322 111 1 23333331 22
Q ss_pred HHHHHHHHhCCeEEeCCCCCCC--------C----------CCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 378 ELWKKIVYDVKLNISPGSSCHC--------T----------EPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 378 ~l~~~ll~~~GI~v~pg~~f~~--------~----------~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
++.+.| +++||.++++..... . ....+|+++.. +++++++.+++.|+++
T Consensus 293 ~l~~~L-~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 293 SVQASL-KAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHH-HHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHH-HHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 455555 456999987642000 0 02368999876 5999999999888765
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=210.94 Aligned_cols=303 Identities=13% Similarity=0.110 Sum_probs=202.1
Q ss_pred cCCCCCC--cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCC
Q 043923 81 LFQDYHG--LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTG 157 (469)
Q Consensus 81 ~Y~~~~g--~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g 157 (469)
.|.+..| ..+|++++|++++ .++|++++|+++|+..++.++ +++||.|+++.|+|..+...+... |
T Consensus 25 ~~~~~~g~~~~~l~~~la~~~~----------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~-g 93 (394)
T 1o69_A 25 NYIAPLGEFVNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-K 93 (394)
T ss_dssp TTTSCTTHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-T
T ss_pred CCccCCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-C
Confidence 3555557 8999999999985 378999999999999999999 899999999999999999888877 9
Q ss_pred CEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc-cc
Q 043923 158 VEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS-GT 236 (469)
Q Consensus 158 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~-~~ 236 (469)
++++.++++ .+|.+|++++++++++. ..++++|++++ |||...+ +++|.++|+++|+++|+||+|+ +.
T Consensus 94 ~~~~~v~~~--~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~ 162 (394)
T 1o69_A 94 AKPVFIDCD--ETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVEICKENDIVLIEDAAEALGS 162 (394)
T ss_dssp CEEEEECBC--TTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTC
T ss_pred CEEEEEEeC--CCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHHHHHHcCCEEEEECcCcccc
Confidence 999999987 46789999999988741 11478888885 8997655 6668889999999999999998 44
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccccc-------------
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL------------- 303 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~------------- 303 (469)
.+.+... ..+ .+.+++..|.+|.+ +|.|+||++++++.+.+.+.....++.
T Consensus 163 ~~~~~~~---~~~-----------~~~~~~s~s~~K~l--~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~ 226 (394)
T 1o69_A 163 FYKNKAL---GTF-----------GEFGVYSYNGNKII--TTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGY 226 (394)
T ss_dssp EETTEET---TSS-----------SSEEEEECCTTSSS--CCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCC
T ss_pred eeCCccc---ccc-----------cCcEEEEEeCCccC--CCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCc
Confidence 3432211 011 12233333345654 567999999965555555544332221
Q ss_pred ---CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceE-EEEEeccccc-------
Q 043923 304 ---VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGL-FCWVDMRHLL------- 368 (469)
Q Consensus 304 ---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~----~g~-~~~v~~~~~~------- 368 (469)
.+.+...++...+ ++ +++..+++++.++++.+.|+++ +++.++. +++ ++++.++...
T Consensus 227 ~~~~~~~~aa~~l~~l---~~----l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 298 (394)
T 1o69_A 227 NYRLSNVLGAIGVAQM---EV----LEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQ 298 (394)
T ss_dssp BCBCCHHHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCC
T ss_pred ccCcCHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccccc
Confidence 1122222221112 22 4556677788888899999887 6555442 333 3566665210
Q ss_pred -------ccCC-hhHHHHHHHHHHHhCCeEEeCCCCC---CCC-CC--------------CeEEEEeec-CCHHHHHHHH
Q 043923 369 -------RSNT-FEAEMELWKKIVYDVKLNISPGSSC---HCT-EP--------------GWFRVCFAN-MSEDTLKLSM 421 (469)
Q Consensus 369 -------~~~~-~~~~~~l~~~ll~~~GI~v~pg~~f---~~~-~~--------------~~iRi~~~~-~~~e~i~~~l 421 (469)
.... ..+..++.+.|. ++||.+++|... .+. .. ..+|+.... .+++|+++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~ 377 (394)
T 1o69_A 299 KDINISQKNITLHPKISKLIEDLK-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEIS 377 (394)
T ss_dssp EEEECCCCCCCCCHHHHHHHHHHH-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHH-HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHH
Confidence 0000 012335666654 679999998532 000 00 234444433 5999999999
Q ss_pred HHHHHHHHh
Q 043923 422 QRLKAFVDS 430 (469)
Q Consensus 422 ~~L~~~l~~ 430 (469)
++|+++++.
T Consensus 378 ~~l~~~~~~ 386 (394)
T 1o69_A 378 KLILKSIKA 386 (394)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999987653
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=221.62 Aligned_cols=296 Identities=14% Similarity=0.197 Sum_probs=197.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCE
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVE 159 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~ 159 (469)
.|.+..+..++++++|++++ .+++++++|+++|+..++.++ +++||.|+++.|+|..+...+... |++
T Consensus 31 ~~~~~~~~~~l~~~la~~~~----------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~ 99 (373)
T 3frk_A 31 WFILGDEDKKFEQEFADYCN----------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYT-GAK 99 (373)
T ss_dssp CCSSSHHHHHHHHHHHHHHT----------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHH-SCE
T ss_pred CccCCchHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCE
Confidence 36666688999999999986 348999999999999999999 899999999999999999888887 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-c
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-F 238 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~ 238 (469)
++.++.++ .++.+|++++++++++ ++++|+ |+||||...+ +++|.++|+++|+++|+|++|+... +
T Consensus 100 ~~~~~~~~-~~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~ 166 (373)
T 3frk_A 100 PIFVEPDI-RTYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLY 166 (373)
T ss_dssp EEEECEET-TTTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEE
T ss_pred EEEEeccc-cccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEE
Confidence 99999874 3578899999988764 788776 7789999887 4558888999999999999998422 2
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCc--cccCCCcceEEEEEecCHHHHHHHHHhcccc--------------
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS--KDLGLPGFRVGAIYSNDDMVVAAATKMSSFG-------------- 302 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~GlRiG~li~~~~~~~~~~~~~~~~~-------------- 302 (469)
++.. .. . -..+++.||| |.+|.+|. .|+++++++.+.+.+......+
T Consensus 167 ~~~~------~~---------~-~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~ 229 (373)
T 3frk_A 167 KGMK------VG---------S-LGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNS 229 (373)
T ss_dssp TTEE------TT---------S-SSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBC
T ss_pred CCEe------cc---------c-cccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccC
Confidence 2111 10 0 1236677876 98873254 7999987776655554433211
Q ss_pred cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEE--EecccccccCChhHHHHH
Q 043923 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCW--VDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 303 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~--v~~~~~~~~~~~~~~~~l 379 (469)
..+.+...+....+.. +++..++.++..+++.+.|+++++.+.. +.++...| +.+.. .+..++
T Consensus 230 ~~~~~~aa~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l 295 (373)
T 3frk_A 230 RLDELQAGFLRVKLKY-------LDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS-------EKRDEL 295 (373)
T ss_dssp CCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE-------SSHHHH
T ss_pred CCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe-------CCHHHH
Confidence 1233333332222221 3444555556667777777766533321 12222221 11111 012245
Q ss_pred HHHHHHhCCeEEeCCCCCCC--------------C-C------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 380 WKKIVYDVKLNISPGSSCHC--------------T-E------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~~--------------~-~------~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+.| .++||.++++..... . . .+.+|+++.. .+++|+++++++|+++..+.-
T Consensus 296 ~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~~ 369 (373)
T 3frk_A 296 QKYL-NNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEHH 369 (373)
T ss_dssp HHHH-HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC----
T ss_pred HHHH-HHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 5555 466999997642110 0 0 1579999976 599999999999988766543
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=220.27 Aligned_cols=281 Identities=16% Similarity=0.166 Sum_probs=190.8
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~~g~~~~~ 162 (469)
...+|++.+|++++ .+..++++++++|+..++.+++++||.|+++.|+|.++.. .+... |++++.
T Consensus 83 ~~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~~~~ 151 (430)
T 3ri6_A 83 TVEDLEQRLKNLTG----------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSF-GIEVRF 151 (430)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEE
Confidence 46788888888875 2335666677899999999999999999999999998877 45556 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+
T Consensus 152 v~~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~---- 211 (430)
T 3ri6_A 152 VDVM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYL---- 211 (430)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTT----
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----
Confidence 9864 78999988864 8999999999999999998 55688899999999999999985322
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEe--cCH-H------------------HHHHHHH-hcc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYS--NDD-M------------------VVAAATK-MSS 300 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~--~~~-~------------------~~~~~~~-~~~ 300 (469)
.... ..+.++++.|+||.+|.+|..+|.+++ .+. . +...... ...
T Consensus 212 -~~~~------------~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~ 278 (430)
T 3ri6_A 212 -LEAK------------RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQN 278 (430)
T ss_dssp -CCGG------------GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHH
T ss_pred -CChH------------HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHh
Confidence 1111 124568899999999867766655554 221 1 1111111 112
Q ss_pred cc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecCC----------------ceEEEE
Q 043923 301 FG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKSN----------------AGLFCW 361 (469)
Q Consensus 301 ~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~~----------------~g~~~~ 361 (469)
.+ ..++...+++...+ +.+..+.++..++...+.+.|+++ +++ |..|. ||+.+|
T Consensus 279 ~g~~~~~~~a~l~l~~l-------~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~ls 351 (430)
T 3ri6_A 279 LGPSLSPHNAYLQSLGL-------ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILT 351 (430)
T ss_dssp HCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEE
T ss_pred cCCCCCHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence 22 23443333332222 234455566677888889999877 454 44333 555899
Q ss_pred EecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHH
Q 043923 362 VDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC---------------------TEPGWFRVCFANMSEDTLKLS 420 (469)
Q Consensus 362 v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~---------------------~~~~~iRi~~~~~~~e~i~~~ 420 (469)
+.++.. .+...++.. ++..++.+.+|..+.. -.+++||||++. |+.+.+
T Consensus 352 f~l~~~------~~~~~~~~~-l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~dl 421 (430)
T 3ri6_A 352 FELESK------EASYRFMDA-LKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIEDL 421 (430)
T ss_dssp EECSSH------HHHHHHHHH-CSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHHHH
T ss_pred EEECCH------HHHHHHHHh-CCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHH
Confidence 999731 222233333 3345667777776652 135799999985 556667
Q ss_pred HHHHHHHH
Q 043923 421 MQRLKAFV 428 (469)
Q Consensus 421 l~~L~~~l 428 (469)
++.|++++
T Consensus 422 ~~dl~~al 429 (430)
T 3ri6_A 422 KEDILQAL 429 (430)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77777665
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-24 Score=219.79 Aligned_cols=322 Identities=12% Similarity=0.137 Sum_probs=219.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCC-----CCCcEEEeCChHHHHHHHHHHhcCC---------CC----------
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTF-----DTSKIVLTAGATSANETLMFCLAEP---------GE---------- 136 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~-----~~~~i~~t~G~~~al~~~~~~l~~~---------gd---------- 136 (469)
.|....+..++++++++++.+.+|..... ....+++|+|+|+|+..++.++..+ ||
T Consensus 104 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~ 183 (486)
T 1js3_A 104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (486)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred ccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCE
Confidence 35444557899999999998887732100 1246899999999999888776321 42
Q ss_pred EEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHH
Q 043923 137 AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLL 216 (469)
Q Consensus 137 ~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l 216 (469)
.|+++.+.|..+...+... |++++.+|++ .++.+|+++|+++|++..+.+..+.+|++++|+||||.+-+ +++|
T Consensus 184 ~v~~s~~~h~s~~~~~~~~-G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I 257 (486)
T 1js3_A 184 VAYASDQAHSSVERAGLIG-GVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEV 257 (486)
T ss_dssp EEEEETTCCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred EEEECCCCcHHHHHHHHhC-CCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC---HHHH
Confidence 3788999999999988888 9999999986 46789999999999874433334568999999999998855 6669
Q ss_pred HHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH-HHHH
Q 043923 217 VNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV-VAAA 295 (469)
Q Consensus 217 ~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~-~~~~ 295 (469)
+++|++||+++++|++|+...+..+.......-+. +...++.|++|+++.| +++|+++++++.. .+.+
T Consensus 258 ~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~----------~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~ 326 (486)
T 1js3_A 258 GPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE----------FADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAF 326 (486)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGG----------GCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGG
T ss_pred HHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCcc----------ccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHh
Confidence 99999999999999999875443322222111111 2234457899999855 8999999976643 2221
Q ss_pred HH----hcc-----------------cc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee
Q 043923 296 TK----MSS-----------------FG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL 352 (469)
Q Consensus 296 ~~----~~~-----------------~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~ 352 (469)
.. +.. .+ ....+.++++...+. .+.+++..+++.++++++.+.|++. ++++.
T Consensus 327 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 401 (486)
T 1js3_A 327 KLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVC 401 (486)
T ss_dssp C------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC
T ss_pred cCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 10 000 00 123345555544442 3346777778888889999999987 78876
Q ss_pred c-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHH
Q 043923 353 K-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 353 ~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~ 429 (469)
. +..++ +.+.++... ....++.+.+.++ |+.+.++..+. +.+++|+++.. .+++++++++++|+++++
T Consensus 402 ~~~~~~~-v~f~~~~~~-----~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 472 (486)
T 1js3_A 402 AEVTLGL-VCFRLKGSD-----GLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICSRKVESGHVRLAWEHIRGLAA 472 (486)
T ss_dssp SCCCSSE-EEEEESSCH-----HHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCceeE-EEEEecChH-----HHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4 55544 445554210 1123566777655 75543333332 35689999854 378999999999999988
Q ss_pred hhcc
Q 043923 430 SITT 433 (469)
Q Consensus 430 ~~~~ 433 (469)
+..+
T Consensus 473 ~~~~ 476 (486)
T 1js3_A 473 ELLA 476 (486)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7765
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=210.23 Aligned_cols=301 Identities=11% Similarity=0.105 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCC--CEEEEee
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTG--VEIVPIQ 164 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g--~~~~~v~ 164 (469)
.++.+++++.+.+.++ .+ +.|++|+|+++|+..++..+ .+||+|++..+.|..+. ..+... | .+++.++
T Consensus 34 ~~~~~~~~~~l~~~~~----~~-~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~~~~~ 106 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYN----AE-AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKG-KFAKSSTVLT 106 (379)
T ss_dssp HHHHHHHHHHHHHHHT----CS-EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHH-CCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CC-CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHh-CCCCceEEEe
Confidence 3455555555555544 33 68899999999999988655 79999999999887643 233444 5 4777777
Q ss_pred ccCCC------Cc-ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc
Q 043923 165 CTSLN------GF-QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV 237 (469)
Q Consensus 165 ~~~~~------~~-~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~ 237 (469)
.+..+ .| .+|++++++++++. ++++|++++++||||.+++.+++++|.++|++||+++|+|++++ .
T Consensus 107 ~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g- 179 (379)
T 3ke3_A 107 AERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G- 179 (379)
T ss_dssp CEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T-
T ss_pred ccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C-
Confidence 64311 11 47999999999642 68889999999999999999999999999999999999999975 2
Q ss_pred cCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc------------------
Q 043923 238 FSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS------------------ 299 (469)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~------------------ 299 (469)
.. ...+..+ +..+++.|++|+++ .+.++|+++++++.+ +.+....
T Consensus 180 --~~-~~~~~~~------------~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (379)
T 3ke3_A 180 --CV-WLDMKEL------------GIDVLISAPQKGWS-STPCAGLVMLSAAAI-KKVESTESNCFSLDLKQWLTIMRAY 242 (379)
T ss_dssp --TC-CCCHHHH------------TCSEEEECTTTTTC-SCCCEEEEEECHHHH-HHHHTCCCSCSTTCHHHHHHHHHHH
T ss_pred --Cc-ccccccc------------CCCEEEecchhhcC-CCCceEEEEECHHHH-HhhhcCCCCceeecHHHHHHHHHhh
Confidence 11 1222222 45677889999997 445699999965543 3332100
Q ss_pred -----cc-ccCcHHHHHHHHHHhcCchhhHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecccccc
Q 043923 300 -----SF-GLVSSQTQYLLSALLSDKKFTQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLR 369 (469)
Q Consensus 300 -----~~-~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~---~g~~~~v~~~~~~~ 369 (469)
.+ ++.+.....++.++|... .+. +++.+++++++++++.+.|+++|+++..+. .+....+..+..
T Consensus 243 ~~g~~~~~~t~~~~~~~a~~aal~~~---~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~-- 317 (379)
T 3ke3_A 243 ENGGHAYHATMPTDSLRQFRDAILEA---KEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD-- 317 (379)
T ss_dssp HTTSCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH--
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHHH---HHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc--
Confidence 01 134555666655555421 222 567778888888999999999998876543 222333333311
Q ss_pred cCChhHHHHHHHHHHHhCCeEEeCCCCCCC---CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 370 SNTFEAEMELWKKIVYDVKLNISPGSSCHC---TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 370 ~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~---~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+... ...|.++||.+.+|..+.. ...+.+|+++.. .+++++++++++|++++++..
T Consensus 318 ------~~~~-~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 318 ------DMHK-GSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp ------HHHS-SHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------chHH-HHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 1112 2345577999999986542 236789999975 489999999999999988754
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=218.02 Aligned_cols=323 Identities=11% Similarity=0.135 Sum_probs=220.7
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CC-----C-EEEEccCCCcC
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE--------PG-----E-AFLLPTPYYPG 147 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------~g-----d-~Vl~~~P~y~~ 147 (469)
|....+..++++++.+++.+.+|. +.+++++++|+|+++++..++.++.. +| + .|+++.+.|..
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s 201 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 201 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhChHHHHHHHHHHHHHHHHhCC--CCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH
Confidence 444445567788888888777662 12278999999999999999988742 56 6 78999999999
Q ss_pred hHHHHhhhCCC---EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC
Q 043923 148 FDRDLKWRTGV---EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN 224 (469)
Q Consensus 148 ~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~ 224 (469)
+...+... |. +++.+|.+ .++.+|+++|+++|++....+.++++|++++|+||||.+.+ +++|+++|++||
T Consensus 202 ~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g 275 (504)
T 2okj_A 202 IKKAGAAL-GFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYN 275 (504)
T ss_dssp HHHHHHHT-TSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Confidence 98888776 76 89999986 36789999999999865444556899999999999999877 556889999999
Q ss_pred eEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH-HHHHHHhcccc-
Q 043923 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV-VAAATKMSSFG- 302 (469)
Q Consensus 225 ~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~-~~~~~~~~~~~- 302 (469)
+++++|++|+...+....+.....- .....+++.|++|.++.| .++|++++.++.+ .........+.
T Consensus 276 ~~lhvD~a~~~~~~~~~~~~~~~~g----------~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~ 344 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRKHRHKLNG----------IERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLF 344 (504)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTT----------GGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSC
T ss_pred CEEEEehhhhhHHHhCHhhHhhcCC----------cccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCcccc
Confidence 9999999998765543322111111 112346677999999855 7899999976533 33222211111
Q ss_pred ---------------------cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec---CCce
Q 043923 303 ---------------------LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK---SNAG 357 (469)
Q Consensus 303 ---------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~---~~~g 357 (469)
....+.++++.+++. .+.+++..++..+.++++.+.|++. ++++.. +..+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~ 419 (504)
T 2okj_A 345 QPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHT 419 (504)
T ss_dssp CSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSS
T ss_pred CCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeE
Confidence 012455555555553 2335667777888889999999887 788764 5666
Q ss_pred EEEEEeccccccc--CC-------hhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee-c-CCHHHHHHHHHHHHH
Q 043923 358 LFCWVDMRHLLRS--NT-------FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-N-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 358 ~~~~v~~~~~~~~--~~-------~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~-~-~~~e~i~~~l~~L~~ 426 (469)
++++...+..... .. .....++.+.++++ |+.+..+..+. ...+++|++++ . .+++++++++++|++
T Consensus 420 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~ 497 (504)
T 2okj_A 420 NVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQG-DKANFFRMVISNPAATQSDIDFLIEEIER 497 (504)
T ss_dssp CEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEET-TEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEEC-CceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6665444432100 00 00123466666655 75433322222 12368999997 3 489999999999999
Q ss_pred HHHh
Q 043923 427 FVDS 430 (469)
Q Consensus 427 ~l~~ 430 (469)
++++
T Consensus 498 ~~~~ 501 (504)
T 2okj_A 498 LGQD 501 (504)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8765
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=217.47 Aligned_cols=326 Identities=11% Similarity=0.138 Sum_probs=222.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--------------CCCEEEEccCCC
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAE--------------PGEAFLLPTPYY 145 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~P~y 145 (469)
..|....+..++++++++++.+.+|. +..++.+++|+|+++++..++.++.. +++.|+++.+.|
T Consensus 125 ~~~~~~p~~~~le~~~~~~l~~~~g~--~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 125 FTYEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CCcccCchHHHHHHHHHHHHHHHhCC--CCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 35666677889999999999998873 23357899999999999988887754 577999999999
Q ss_pred cChHHHHhhhCCC---EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh
Q 043923 146 PGFDRDLKWRTGV---EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE 222 (469)
Q Consensus 146 ~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~ 222 (469)
..+...+... |+ +++.+|.+ .++.+|+++|+++|++....+..+++|++++|+||||.+-+ +++|+++|++
T Consensus 203 ~s~~~~~~~~-g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~---l~~I~~ia~~ 276 (511)
T 3vp6_A 203 YSIKKAGAAL-GFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEK 276 (511)
T ss_dssp THHHHHHHHT-TSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC---HHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc---HHHHHHHHHH
Confidence 9999988877 88 89999987 35789999999999875444455899999999999999855 6679999999
Q ss_pred cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH-HHHHhccc
Q 043923 223 KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA-AATKMSSF 301 (469)
Q Consensus 223 ~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~-~~~~~~~~ 301 (469)
||+++++|++|+...+..+.+.. .... .....+++.+++|+++.| ..+|++++.++.+.. .......+
T Consensus 277 ~~~~lhvD~a~~~~~~~~~~~~~---~~~g-------~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y 345 (511)
T 3vp6_A 277 YNLWLHVDAAWGGGLLMSRKHRH---KLNG-------IERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASY 345 (511)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGG---GGTT-------GGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTT
T ss_pred cCCEEEEEccchhhHhhChhhhh---hccC-------CccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCcc
Confidence 99999999999875443322211 1110 113356667999999844 788999887664433 22111111
Q ss_pred c----------------------cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec---CC
Q 043923 302 G----------------------LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK---SN 355 (469)
Q Consensus 302 ~----------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~---~~ 355 (469)
. ....+..+++..++. .+.+++..++..++.+++.+.|++. |+++.. +.
T Consensus 346 l~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g-----~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~ 420 (511)
T 3vp6_A 346 LFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPE 420 (511)
T ss_dssp TCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCS
T ss_pred ccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 0 012333444444432 4456778888888999999999987 888765 44
Q ss_pred ceEEEEEecccccccC--Ch-------hHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSN--TF-------EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRL 424 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~--~~-------~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~--~~~e~i~~~l~~L 424 (469)
.+.++|.-.|...+.. .. ....++.+.|+++ |+.+.. ..+...+.+++|++++. .++++++.++++|
T Consensus 421 ~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i 498 (511)
T 3vp6_A 421 HTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKANFFRMVISNPAATQSDIDFLIEEI 498 (511)
T ss_dssp SSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHHHHH
T ss_pred eEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHHHHH
Confidence 5444433233322110 00 0122456666655 765443 11112234589999943 4889999999998
Q ss_pred HHHHHhh
Q 043923 425 KAFVDSI 431 (469)
Q Consensus 425 ~~~l~~~ 431 (469)
+++-+.+
T Consensus 499 ~~~~~~~ 505 (511)
T 3vp6_A 499 ERLGQDL 505 (511)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 8776554
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=227.63 Aligned_cols=291 Identities=14% Similarity=0.061 Sum_probs=190.2
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEE
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIV 161 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~ 161 (469)
|.+...+.++++.+|+ ++ .+ +++++|+|+++++..++.+++++||.|+++.|+|..+...+... |++++
T Consensus 53 ~~~~~~~~~~~~~la~-~g--------~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~ 121 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-HS--------DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDIS-QQEGH 121 (446)
T ss_dssp TSCSSHHHHHHHHHCS-CT--------TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHH-TCCEE
T ss_pred cCcchHHHHHHHHHHh-cC--------CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHc-CCeEE
Confidence 3344456788888888 75 33 78999999999999999999999999999999999999888887 99999
Q ss_pred EeeccCCCC----cccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccc-
Q 043923 162 PIQCTSLNG----FQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGT- 236 (469)
Q Consensus 162 ~v~~~~~~~----~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~- 236 (469)
.++...+.+ +.+|++++ +. +++++|++++ .|+||.+++ +++|+++|++||+++|+||+|+..
T Consensus 122 ~v~~~~~~~~~~~~~~d~~~l---~~------~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~ 188 (446)
T 2x3l_A 122 FIETHQSPLTNHYNKVNLSRL---NN------DGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHF 188 (446)
T ss_dssp ECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred EEeCeeccccCcCCCCCHHHH---cC------CCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhh
Confidence 998832223 56777777 22 2789999998 556999998 556899999999999999999862
Q ss_pred ccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHH-HHHHH-hc--ccccCcHHHHHHH
Q 043923 237 VFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVV-AAATK-MS--SFGLVSSQTQYLL 312 (469)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~-~~~~~-~~--~~~~~s~~~q~~~ 312 (469)
.|.+. ..+...+ +..+++.|+||+++ ++.++||++++++.+. ..+.. .. ..++.+.....++
T Consensus 189 ~f~~~-~~~~~~~------------g~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal 254 (446)
T 2x3l_A 189 GLQGF-PDSTLNY------------QADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASL 254 (446)
T ss_dssp TSTTS-CCCGGGG------------TCSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred ccCCC-CCChHHc------------CCCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHH
Confidence 23332 2232222 23488899999664 4456899999665432 11211 11 1222333333222
Q ss_pred HHHhcCchhhHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEE
Q 043923 313 SALLSDKKFTQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNI 391 (469)
Q Consensus 313 ~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v 391 (469)
.+++. ++... .++..++..+..+++.+. |+++..+..+.++|+.++. . +..++.+.|.+ +||.+
T Consensus 255 ~~a~~---~l~~~g~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~-~------~~~~l~~~L~~-~GI~v 319 (446)
T 2x3l_A 255 ESAAQ---FYKTYDSTLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEG-F------TGHDIQNWFMN-AHIYL 319 (446)
T ss_dssp HHHHH---HHHHCCCHHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTT-S------CHHHHHHHHHH-TTEEE
T ss_pred HHHHH---HHHHhCHHHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCC-c------CHHHHHHHHHH-CCCEE
Confidence 22221 10110 011223333333333333 7888766555678998862 1 12345666654 59999
Q ss_pred e-CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 392 S-PGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 392 ~-pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
. +| .+++|++++. .+++++ +++++|+++++...+
T Consensus 320 ~~~g-------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~~~ 355 (446)
T 2x3l_A 320 ELAD-------DYQALAILPLWHHDDTY-LFDSLLRKIEDMILP 355 (446)
T ss_dssp SEEC-------SSCEEEECCCCCTTCCC-CHHHHHHHHHTCCCC
T ss_pred EecC-------CCEEEEEeecCCCHHHH-HHHHHHHHHHHhhcc
Confidence 7 44 3579999985 388999 999999999887653
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=218.76 Aligned_cols=293 Identities=12% Similarity=0.101 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc---C----------C-CCEEEEccCCCcChHHHHhh
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA---E----------P-GEAFLLPTPYYPGFDRDLKW 154 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~---~----------~-gd~Vl~~~P~y~~~~~~~~~ 154 (469)
.+|.+.++++++ ...+++|++++|+++|+..++..+. . + ||.|++.+|.|+++...+..
T Consensus 104 ~~la~~la~~~~-------~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~ 176 (449)
T 2cjg_A 104 ARFVETFARVLG-------DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLS 176 (449)
T ss_dssp HHHHHHHHHHHC-------CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGG
T ss_pred HHHHHHHHHhcC-------CCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhh
Confidence 455555555552 1357899999999999999987543 2 2 89999999999886543322
Q ss_pred hCC--------C-----EEEEeeccCCCCc--------ccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCC-CCCCHH
Q 043923 155 RTG--------V-----EIVPIQCTSLNGF--------QITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLG-TTMSRN 211 (469)
Q Consensus 155 ~~g--------~-----~~~~v~~~~~~~~--------~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG-~~~s~e 211 (469)
..| . .++.+|.+..+.. ..+++++++++++. ++++++|+ ++| +|||| .+++.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi-~ep~~~~~G~~~~~~~ 252 (449)
T 2cjg_A 177 LTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFV-AEPIQGEGGDRHFRPE 252 (449)
T ss_dssp TCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEE-ECSEETTTTCEECCHH
T ss_pred hcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEE-EeCcCCCCCCccCCHH
Confidence 212 1 4566665420011 13456677777531 23677655 556 68999 589999
Q ss_pred HHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH
Q 043923 212 ELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV 291 (469)
Q Consensus 212 ~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~ 291 (469)
++++|.++|++||+++|+||+|.++.+.+.. ... +... ....+ .|+||++ |+||++++++ +
T Consensus 253 ~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~-~~~-~~~~--------~~~di---~t~sK~l-----~iG~~~~~~~-~ 313 (449)
T 2cjg_A 253 FFAAMRELCDEFDALLIFDEVQTGCGLTGTA-WAY-QQLD--------VAPDI---VAFGKKT-----QVCGVMAGRR-V 313 (449)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-STH-HHHT--------CCCSE---EEECGGG-----SSEEEEECGG-G
T ss_pred HHHHHHHHHHHCCcEEEEeccccCCCccCcc-eee-cccC--------CCceE---EEecCcc-----cEEEEEECHH-H
Confidence 9999999999999999999999975444431 121 2211 11233 2789988 7899999654 4
Q ss_pred HHH-----HHH--hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc----C--CceecCCceE
Q 043923 292 VAA-----ATK--MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA----G--ISCLKSNAGL 358 (469)
Q Consensus 292 ~~~-----~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g--~~v~~~~~g~ 358 (469)
.+. ... ....+..+++++.++.++|+... + +...++++++++++.+.|+++ . +....+.+ .
T Consensus 314 ~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g-~ 387 (449)
T 2cjg_A 314 DEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIE---A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRG-L 387 (449)
T ss_dssp GGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHH---H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEET-T
T ss_pred hhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeecc-E
Confidence 332 111 11223467888888887775321 1 234455666667777777653 2 43444554 5
Q ss_pred EEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 359 FCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 359 ~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
|++++++.. ....+++..++ ++||.+.|+. .+++|++++. .+++++++++++|++++++
T Consensus 388 ~~~~~~~~~------~~~~~~~~~l~-~~Gv~v~~~g------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 388 MCAFSLPTT------ADRDELIRQLW-QRAVIVLPAG------ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp EEEEECSSH------HHHHHHHHHHH-HTTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCh------HHHHHHHHHHH-HCCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 677888642 12345777777 5699999862 4789998765 4999999999999999875
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=217.59 Aligned_cols=302 Identities=13% Similarity=0.053 Sum_probs=202.9
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChH-HHHHHHHHHhcC--CCCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGAT-SANETLMFCLAE--PGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~-~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
..++.+++.+++.+.+| ++++ +++|+|++ .++..++.++.. +|+.|+++.+.|..+...++.. |++++.++
T Consensus 131 ~~~~~~~~~~~la~~~g----~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~-G~~~~~v~ 204 (456)
T 2z67_A 131 MYALTNKILESFFKQLG----LNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcC----CCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHc-CCCceEEE
Confidence 34556666666666655 4455 99999999 566555555433 6788999999999998888877 99999988
Q ss_pred ccC-CCCcccCHHHHHHHH-HHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 165 CTS-LNGFQITETAIEEAY-QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 165 ~~~-~~~~~~d~~~l~~~i-~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
..+ +.++.+|+++++++| ++.. ..++.+|++++|+||||.+.+. ++|.++|+++|+++++|++|+...++..
T Consensus 205 ~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~vv~~~~nn~tG~i~~l---~~I~~la~~~g~~v~vD~A~~~~~~g~~- 278 (456)
T 2z67_A 205 TVLDGDRVYVPVEDIENAIKKEIE--LGNRPCVLSTLTFFPPRNSDDI---VEIAKICENYDIPHIINGAYAIQNNYYL- 278 (456)
T ss_dssp CEEETTEEECCHHHHHHHHHHHHH--TTCCEEEEEESSCCTTBCCCCH---HHHHHHHHHHTCCEEEECTTTTTCHHHH-
T ss_pred EeccCCCCCcCHHHHHHHHHHHhh--CCCeEEEEEeCCCCCCCCcCCH---HHHHHHHHHcCCcEEEECcchHHHHHhh-
Confidence 732 356789999999999 4211 1267788899999999999874 5588889999999999999986432110
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccccc--CcHHHHHHHHHHhcCch
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQYLLSALLSDKK 320 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~--~s~~~q~~~~~~l~~~~ 320 (469)
........ . ...+++.|++|.++ ++.++||++++++.+...+......+. .+.+.+.++...+.
T Consensus 279 -~~~~~~~~--------~-~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~--- 344 (456)
T 2z67_A 279 -EKLKKAFK--------Y-RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG--- 344 (456)
T ss_dssp -HHHHHHHT--------S-CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH---
T ss_pred -HHHHHhhC--------C-CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH---
Confidence 01111111 1 23356789999775 678999999965554444432211111 11333444443332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEec--ccccccCChhHHHHHHHHHHHhCCe---EE
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDM--RHLLRSNTFEAEMELWKKIVYDVKL---NI 391 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~--~~~~~~~~~~~~~~l~~~ll~~~GI---~v 391 (469)
...+++..+++.+.++++.+.|+++ |+.+.+++ .++++.+ +.. ..++...|. +.|| .+
T Consensus 345 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~--------~~~l~~~L~-~~gi~~~rv 411 (456)
T 2z67_A 345 --SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD--------PVEIAAKLY-NLRVTGPRG 411 (456)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC--------HHHHHHHHH-HTTEESCEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH--------HHHHHHHHH-HcCCCcceE
Confidence 3345777888888889999999887 88777766 4556666 321 124556655 4565 45
Q ss_pred e------CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 392 S------PGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 392 ~------pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
. +|..|.....+++|++++. .+++++++++++|++++
T Consensus 412 ~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 412 IKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred EeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 4 2444444345799999984 59999999999998764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=215.11 Aligned_cols=316 Identities=10% Similarity=0.154 Sum_probs=212.3
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcEEEeCChHHHHHHHHHHh----c---------CC------CC-EEEE
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCL----A---------EP------GE-AFLL 140 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l----~---------~~------gd-~Vl~ 140 (469)
|.......++++++.+++.+.+| .++ +.+++|+|+++++..++.++ + .+ |+ .|++
T Consensus 132 ~~~~~~~~~le~~~~~~la~~~g----~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~ 207 (497)
T 2qma_A 132 WDQASSATYVEQKVVNWLCDKYD----LSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVC 207 (497)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTT----CCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEE
T ss_pred hhhChHHHHHHHHHHHHHHHHhC----CCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEE
Confidence 44444567888888888877766 334 78999999999999988873 2 12 46 7999
Q ss_pred ccCCCcChHHHHhhhCCC---EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHH
Q 043923 141 PTPYYPGFDRDLKWRTGV---EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLV 217 (469)
Q Consensus 141 ~~P~y~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~ 217 (469)
+.+.|..+...+... |. +++.+|++ .++.+|+++|+++|++....+.++.+|++++|+||||.+.+ +++|+
T Consensus 208 s~~~h~s~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~ 281 (497)
T 2qma_A 208 SKKSHFTVQKSASWM-GLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIA 281 (497)
T ss_dssp ETTSCTHHHHHHHHT-TSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHH
T ss_pred CCCchHHHHHHHHHc-CCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHH
Confidence 999999888887766 66 78999986 46789999999999763322223558889999999999876 56688
Q ss_pred HHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH
Q 043923 218 NIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 218 ~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~ 297 (469)
++|++||+++++|++|+...+... +.. .... .....+++.|++|+++.| .++|++++.++...+.+..
T Consensus 282 ~l~~~~~~~l~vD~a~~~~~~~~~-~~~---~~~g-------i~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~ 349 (497)
T 2qma_A 282 DMAVKHDMWMHVDGAYGGALILSS-HKS---RLKG-------VERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLH 349 (497)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGST-TGG---GGTT-------GGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC
T ss_pred HHHHHcCCEEEEehhhhHHHHhCc-chH---hhcC-------cccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcC
Confidence 999999999999999987654322 111 1110 112346677999999855 7999999876543222111
Q ss_pred hccccc------C-------------cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee-cCCc
Q 043923 298 MSSFGL------V-------------SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL-KSNA 356 (469)
Q Consensus 298 ~~~~~~------~-------------s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-~~~~ 356 (469)
...+.. . ..+.++++...+. .+.+++..+++.+.++++.+.|++. ++++. ++..
T Consensus 350 ~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 424 (497)
T 2qma_A 350 HADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG-----PKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSL 424 (497)
T ss_dssp --------------------CCSCCCTHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSS
T ss_pred CchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCc
Confidence 011100 0 1223333334432 2345667777888889999999987 78775 4445
Q ss_pred eEEEEEecccccccCChh-HHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee-c-CCHHHHHHHHHHHHHHHHh
Q 043923 357 GLFCWVDMRHLLRSNTFE-AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-N-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 357 g~~~~v~~~~~~~~~~~~-~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~-~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.++++.+.... .... ...++...+. +.|+.+.++..+. +.+++|+++. . .+++++++++++|++++++
T Consensus 425 -~~v~f~~~~~~--~~~~~l~~~l~~~l~-~~G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 425 -STVLFRATHET--ADLDELNKALRLEAL-TRGIAVLGETIVD--GKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp -SEEEEEECCSS--SCHHHHHHHHHHHHH-HHTSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -eEEEEEEcCCc--cCHHHHHHHHHHHHH-hCCCEEEEeeEEC--CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 46667765321 0111 1223445555 4599887654442 3568999983 3 4899999999999998875
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=206.71 Aligned_cols=282 Identities=15% Similarity=0.180 Sum_probs=190.5
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH-----hhhCCCEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL-----KWRTGVEIV 161 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~-----~~~~g~~~~ 161 (469)
...+|++.+|++++ .+.+++++++++|+.. +..++++||.|+++.|+|.+....+ ... |++++
T Consensus 68 ~~~~l~~~la~l~g----------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~-g~~~~ 135 (400)
T 3nmy_A 68 TRFAYERCVAALEG----------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTA-GLDFS 135 (400)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHH-CCEEE
T ss_pred HHHHHHHHHHHHhC----------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhc-CeEEE
Confidence 34677888887764 3366777777999998 5678899999999999998655443 334 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.++.+ |++++++++++ ++++|++++|+||||.+++ +++|.++|++||+++|+||+|+...+..+
T Consensus 136 ~v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~ 199 (400)
T 3nmy_A 136 FVDLT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQRP 199 (400)
T ss_dssp EECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCG
T ss_pred EECCC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCCh
Confidence 98864 78899988864 8899999999999999998 66689999999999999999985433211
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEE--EEecCHHHHHHHHHhcc-c-ccCcHHHHHHHHHHhc
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGA--IYSNDDMVVAAATKMSS-F-GLVSSQTQYLLSALLS 317 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~--li~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~l~ 317 (469)
. ..+.++++.|+||.+|.+|.++|. +++.++.+.+.+..... + ...++...+++.+.++
T Consensus 200 -----~------------~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~ 262 (400)
T 3nmy_A 200 -----L------------SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK 262 (400)
T ss_dssp -----G------------GGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT
T ss_pred -----h------------hcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh
Confidence 1 124568899999999878877755 55556655554443322 2 2355666666555554
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecC----------------CceEEEEEecccccccCChhHHHHH
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS-CLKS----------------NAGLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~~~----------------~~g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
. +..+.++..++.+.+.+.|+++ .+. +..| ..|.++++.++... +....+
T Consensus 263 ~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-----~~~~~~ 330 (400)
T 3nmy_A 263 T-------LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-----DAAKRF 330 (400)
T ss_dssp T-------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-----HHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-----HHHHHH
Confidence 4 3344556677778888888876 232 3222 13678889886421 111122
Q ss_pred HHHHHHhCCeEEeCCCCCC----------C-----------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 380 WKKIVYDVKLNISPGSSCH----------C-----------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~----------~-----------~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+.. ++-.++.+..|..+. . -.++.+|+|++. |+.+.+++.|+++++
T Consensus 331 ~~~-l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 331 CEK-TELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp HHH-CSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred HHc-CCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 222 233344444444322 0 125789999985 456667777888776
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=203.28 Aligned_cols=293 Identities=16% Similarity=0.183 Sum_probs=194.4
Q ss_pred CcHHHHHHH-HHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 87 GLPAFKKAL-VEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 87 g~~~Lr~ai-a~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
...+|++++ |++++ ..+++++++|+++|+..++.++ +++||.|+++.|+|..+...+... |++++.++
T Consensus 37 ~~~~l~~~~~a~~~g---------~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~-G~~~~~v~ 106 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQ---------NRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWC-GLEPYFID 106 (377)
T ss_dssp HHHHHHHHHHHHTST---------TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHhC---------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEe
Confidence 468999999 99874 2567899999999999999998 899999999999999999888877 99999999
Q ss_pred ccCCCCcccCHHHHHHHH-HHHHhcCCc--eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 165 CTSLNGFQITETAIEEAY-QLAQKRHLK--VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i-~~~~~~~~~--~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
+++ ++|.+|++++++++ ++ + +++|+ |+||+|...+.+ +|.++|+ ||++||+|++|+.......
T Consensus 107 ~~~-~~~~~d~~~l~~~i~~~------~~~tk~v~---~~~~~G~~~~~~---~i~~la~-~~~~vi~D~a~a~g~~~~~ 172 (377)
T 3ju7_A 107 ISI-DDWYMDKTVLWDKIEEL------KEEVAIVV---PYATFGSWMNLE---EYEELEK-KGVPVVVDAAPGFGLMNGG 172 (377)
T ss_dssp BCT-TTCSBCHHHHHHHHHHH------GGGEEEEC---CBCGGGBCCCCH---HHHHHHH-TTCCBEEECTTCTTCEETT
T ss_pred cCC-ccCCcCHHHHHHHHhcC------CCCceEEE---EECCCCCccCHH---HHHHHHh-cCCEEEEECCCccCCeECC
Confidence 874 46889999999998 43 5 88766 778999998854 5788888 9999999999973211111
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc--------------cCcHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG--------------LVSSQ 307 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~--------------~~s~~ 307 (469)
..+... ..+..++..+.+|.++ +| +.|+++++++.+.+.++.+...+ .++.+
T Consensus 173 --~~~g~~----------~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 238 (377)
T 3ju7_A 173 --MHYGQD----------FSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEY 238 (377)
T ss_dssp --EETTTT----------CSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHH
T ss_pred --EeccCC----------CCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHH
Confidence 010000 1133333334579998 46 67899988877776666554321 13444
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC---CceecCCc--eE--EEEEecccccccCChhHHHHHH
Q 043923 308 TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG---ISCLKSNA--GL--FCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 308 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g---~~v~~~~~--g~--~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
.+.++...+.. ++...++.++..+++.+.|++++ +.+.+..+ .+ |+.+.+++.. +..++.
T Consensus 239 ~aa~~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ 305 (377)
T 3ju7_A 239 AAAIGIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV------RNKQVI 305 (377)
T ss_dssp HHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS------CHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh------hHHHHH
Confidence 44444444432 33444455556666777777764 33332221 11 3344444311 122455
Q ss_pred HHHHHhCCeEEeCCCC--CCC--------CC---------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 381 KKIVYDVKLNISPGSS--CHC--------TE---------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~--f~~--------~~---------~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.| +++||.++.+.. ++. .. .+.+|+.+.. ++++++++.++.|++++.+.
T Consensus 306 ~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 306 EDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp HHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred HHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 554 567999987641 110 00 2369999875 59999999999999888764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=206.44 Aligned_cols=346 Identities=14% Similarity=0.090 Sum_probs=202.2
Q ss_pred CeeeeeccccccChHHHHHHHhcC-CCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc---E
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRN-PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK---I 114 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~---i 114 (469)
..|.|..++|..++ .+.+++... .+... +| ......|....-..+|++...+.+.+.+| .+.+. .
T Consensus 55 ~~i~lias~n~~~~-~V~eA~~~~l~~~y~---~G---~~g~r~~~G~~~~~~lE~~a~~~~a~l~g----~~~~~~~~~ 123 (490)
T 2a7v_A 55 RGLELIASENFCSR-AALEALGSCLNNKYS---EG---YPGKRYYGGAEVVDEIELLCQRRALEAFD----LDPAQWGVN 123 (490)
T ss_dssp HSEECCTTCCCCCH-HHHHHHTSGGGTCCC---CC---------------CTHHHHHHHHHHHHHTT----CCTTTEEEE
T ss_pred cCceEECCCCCCCH-HHHHHHHHHHcCCCc---cC---CCcccccCccHHHHHHHHHHHHHHHHHcC----CCcccCceE
Confidence 45788887877544 444444432 11000 00 00011122222234777444455555444 44442 3
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH--------HHhhhCCCE--EEEeeccCCCCcccCHHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR--------DLKWRTGVE--IVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--------~~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
++++++++|+..++.++++|||+|++++|.|.++.. .+... |.. ++++++++ .++.+|++++++.+.+
T Consensus 124 v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~-g~~~~~~~~~vd~-~~~~iD~d~le~~l~~ 201 (490)
T 2a7v_A 124 VQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT-SIFFESMPYKLNP-KTGLIDYNQLALTARL 201 (490)
T ss_dssp CCCSSHHHHHHHHHHHHCCSCEECCC--------------------------------CCBCT-TTCSBCHHHHHHHHHH
T ss_pred EeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHc-CCeEEEEeccccc-ccCCcCHHHHHHHHhh
Confidence 456678999999999999999999999998865421 12233 554 34444443 3568999999999875
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc-ccccCCCCccchhhhhhccccccCCcCCe
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTQVWNR 263 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (469)
. ++++|+++.|+||+ ..+ +++|.++|++||+++++|+++. ++++.+.. .+.. + ..
T Consensus 202 ~-----~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~-~~~~---~----------~a 257 (490)
T 2a7v_A 202 F-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVI-PSPF---K----------HA 257 (490)
T ss_dssp H-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSS-CCGG---G----------TC
T ss_pred c-----CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcC-CCCC---C----------CC
Confidence 3 68888888889885 334 6779999999999999999975 33333321 2211 1 23
Q ss_pred EEEEccCccccCCCcceEEEEEecCH--------------HHHHHHHHhccc---ccCcHHHHHHHHHHhcCchhhHHHH
Q 043923 264 VHIVYSLSKDLGLPGFRVGAIYSNDD--------------MVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFTQNYI 326 (469)
Q Consensus 264 ~i~i~S~SK~~g~~GlRiG~li~~~~--------------~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~ 326 (469)
.+++.|+||++ .|.|.|++++++. .+.+.+++.... +..+.....++..++.... ....
T Consensus 258 Div~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~--~~~~ 333 (490)
T 2a7v_A 258 DIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC--TPMF 333 (490)
T ss_dssp SEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHH--SHHH
T ss_pred CEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHh--hhhH
Confidence 47788999998 4567799998764 234444433221 2223333333333333211 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC---CCCC
Q 043923 327 SENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH---CTEP 402 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~---~~~~ 402 (469)
++.++++.+++++|.+.|.+.|+++.. ....+++|++++.... +. ..+.+.|++.||.+..+..++ +..+
T Consensus 334 ~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~-----~~-~~~~~~L~~~GI~v~~~~~p~d~~p~~~ 407 (490)
T 2a7v_A 334 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGL-----DG-ARAERVLELVSITANKNTCPGDRSAITP 407 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTC-----CH-HHHHHHHHHTTEECEEECCTTCCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCC-----CH-HHHHHHHHhCCeEEecCccCCCCCCCCC
Confidence 667778888999999999999998865 3345788999864210 11 234556678899998654333 2235
Q ss_pred CeEEEEeec-----CCHHHHHHHHHHHHHHHHhh
Q 043923 403 GWFRVCFAN-----MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 403 ~~iRi~~~~-----~~~e~i~~~l~~L~~~l~~~ 431 (469)
+.+|++... .++++++++++.|.++++..
T Consensus 408 ~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 408 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 789997732 47899999999999988754
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=207.20 Aligned_cols=283 Identities=13% Similarity=0.092 Sum_probs=185.1
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
...+|++.+|++++ .+.+++++|+++|+..++.+++++||.|+++.|.|.+....+ +.. |+++..
T Consensus 83 ~~~~le~~lA~l~g----------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~-G~~v~~ 151 (415)
T 2fq6_A 83 THFSLQQAMCELEG----------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTSW 151 (415)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGG-TCEEEE
T ss_pred hHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CcEEEE
Confidence 35779999999885 245777789999999999999999999999999998876543 345 999998
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh--cCeEEEEeccccccccCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE--KNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~--~~~~iI~Deay~~~~~~~ 240 (469)
++.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|+..++ .
T Consensus 152 v~~~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~-~ 214 (415)
T 2fq6_A 152 FDPL-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL-F 214 (415)
T ss_dssp ECTT-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS-S
T ss_pred ECCC-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc-C
Confidence 8753 67888888764 7899999999999999998 5568889999 9999999999985422 1
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcce-EEEEEecCHHHHHHHHHh-cccc-cCcHHHHHHHHHHhc
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFR-VGAIYSNDDMVVAAATKM-SSFG-LVSSQTQYLLSALLS 317 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlR-iG~li~~~~~~~~~~~~~-~~~~-~~s~~~q~~~~~~l~ 317 (469)
. ++ .+ +.++++.|+||.+|.+|.+ +||+++++..+ +.+... ...+ ..++...+++...+
T Consensus 215 ~---p~-~~------------g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~-~~l~~~~~~~G~~~~~~~a~~~~~~l- 276 (415)
T 2fq6_A 215 K---AL-DF------------GIDVSIQAATKYLVGHSDAMIGTAVCNARCW-EQLRENAYLMGQMVDADTAYITSRGL- 276 (415)
T ss_dssp C---GG-GG------------TCSEEEEETTTTTTCSSSCCCEEEEECTTTH-HHHHHHHHHTTCCCCHHHHHHHHHHH-
T ss_pred C---cc-cc------------CCeEEEEeCccccCCCCCceEEEEEeCHHHH-HHHHHHHHhcCCCCCHHHHHHHHhhh-
Confidence 1 11 11 4568899999999977755 59999866543 333322 2222 23444333333322
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-eecC----------------CceEEEEEecccccccCChhHHHHH
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAG-IS-CLKS----------------NAGLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~-v~~~----------------~~g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
+.+..+.++..++.+.+.+.|++.. +. +..| ..|..+++.+++... ..+...+
T Consensus 277 ------~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~---~~~~~~~ 347 (415)
T 2fq6_A 277 ------RTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN---NEELANY 347 (415)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCC---HHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCC---HHHHHHH
Confidence 2244555566677788888887752 22 2111 135577888874200 0112222
Q ss_pred HHHHHHhCCeEEeCCCCCC-------------------CCCCCeEEEEeecC-CHHHHHHHHHHHH
Q 043923 380 WKKIVYDVKLNISPGSSCH-------------------CTEPGWFRVCFANM-SEDTLKLSMQRLK 425 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~-------------------~~~~~~iRi~~~~~-~~e~i~~~l~~L~ 425 (469)
+.. ++..++.+..|+.+. ...++.||+|++.. ++++++.+.++|+
T Consensus 348 l~~-l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~ 412 (415)
T 2fq6_A 348 LDN-FSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA 412 (415)
T ss_dssp HTT-CSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHh-CCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 222 223345555553211 01247899999963 4455555555554
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-22 Score=206.29 Aligned_cols=321 Identities=14% Similarity=0.187 Sum_probs=213.1
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-------C-CCC------EEEEccCCCcC
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-------E-PGE------AFLLPTPYYPG 147 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-------~-~gd------~Vl~~~P~y~~ 147 (469)
|...++..++.+++.+++.+.+| .+++++++|+|+++|+..++.++. + +|+ .|++..+.|..
T Consensus 140 ~~~s~~~~~le~~~~~~la~l~g----~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s 215 (515)
T 2jis_A 140 YEIAPVFVLMEEEVLRKLRALVG----WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS 215 (515)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHT----CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhchHHHHHHHHHHHHHHHHhC----CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH
Confidence 44444556777777777766665 457899999999999998888763 2 575 89999999999
Q ss_pred hHHHHhhhCCC---EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcC
Q 043923 148 FDRDLKWRTGV---EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKN 224 (469)
Q Consensus 148 ~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~ 224 (469)
+...+... |. +++.+|.+ .++.+|+++|+++|++....+.++++|++++|+||||.+.+ +++|+++|++||
T Consensus 216 ~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g 289 (515)
T 2jis_A 216 IQKGAAFL-GLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHG 289 (515)
T ss_dssp HHHHHHHT-TSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcC
Confidence 98888776 87 89999986 35789999999999864444446899999999999999987 556889999999
Q ss_pred eEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCH--HHHHHHHHhcc--
Q 043923 225 IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD--MVVAAATKMSS-- 300 (469)
Q Consensus 225 ~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~--~~~~~~~~~~~-- 300 (469)
+++++|++|+...+..+.+.. .+.. ..+..+++.|++|+++ .+.++|++++.++ .+.+.......
T Consensus 290 ~~l~vD~a~~~~~~~~~~~~~---~~~g-------~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl 358 (515)
T 2jis_A 290 LWLHVDAAWGGSVLLSQTHRH---LLDG-------IQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYL 358 (515)
T ss_dssp CEEEEEETTGGGGGGCTTTGG---GGTT-------GGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC-----
T ss_pred CeEEEehhhhhHHHhChhhHh---hcCC-------CccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhc
Confidence 999999999976554332221 1110 1134577889999997 4468999999766 33332110000
Q ss_pred ------------cc--------cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC-CceE
Q 043923 301 ------------FG--------LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS-NAGL 358 (469)
Q Consensus 301 ------------~~--------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~-~~g~ 358 (469)
++ ....+.++++.+.+. ...+++..++..+..+++.+.|++. |+++..+ ..+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~ 433 (515)
T 2jis_A 359 FQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN 433 (515)
T ss_dssp ----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE
T ss_pred cCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeE
Confidence 00 011344444444443 2335667777888889999999987 7877653 3445
Q ss_pred EEEEeccccccc----CChhHH-----HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee-c-CCHHHHHHHHHHHHHH
Q 043923 359 FCWVDMRHLLRS----NTFEAE-----MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-N-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 359 ~~~v~~~~~~~~----~~~~~~-----~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~-~-~~~e~i~~~l~~L~~~ 427 (469)
+++...+..... ...... ..+...+. +.|+........ ....+++|++++ . .+++++++++++|+++
T Consensus 434 v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~-~~G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~ 511 (515)
T 2jis_A 434 VCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMV-KEGSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERL 511 (515)
T ss_dssp EEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHH-HHTSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCccccccccchhHHHHHHHHHHHHHHHHH-hcCCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 444333432111 111111 12344455 447654321100 112468999994 3 4899999999999988
Q ss_pred HHh
Q 043923 428 VDS 430 (469)
Q Consensus 428 l~~ 430 (469)
+++
T Consensus 512 ~~~ 514 (515)
T 2jis_A 512 GQD 514 (515)
T ss_dssp HTT
T ss_pred Hhh
Confidence 764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-22 Score=204.30 Aligned_cols=323 Identities=12% Similarity=0.113 Sum_probs=225.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCC------CCCcEEEeCChHHHHHHHHHHhcC-------------------C
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTF------DTSKIVLTAGATSANETLMFCLAE-------------------P 134 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~------~~~~i~~t~G~~~al~~~~~~l~~-------------------~ 134 (469)
..|....+..++++++++++.+.+|..... .....++|+|+++++..++.+..+ +
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 356666788999999999999987732100 013678999999999988877632 5
Q ss_pred CCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHH
Q 043923 135 GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELN 214 (469)
Q Consensus 135 gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~ 214 (469)
++.|+++.+.|..+...+... |++++.+|++ .++.+|+++|+++|++....+..+.+|+++.++|+||.+-+ ++
T Consensus 188 ~~~v~~s~~~H~s~~~~~~~~-g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---l~ 261 (481)
T 4e1o_A 188 RLVAYASDQAHSSVEKAGLIS-LVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---LS 261 (481)
T ss_dssp TEEEEEETTSCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HH
T ss_pred CeEEEEcCcchHHHHHHHHhC-CCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---HH
Confidence 679999999999999888877 9999999986 46789999999999875444445788899999999998866 66
Q ss_pred HHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHH-
Q 043923 215 LLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVA- 293 (469)
Q Consensus 215 ~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~- 293 (469)
+|+++|++||+++++|++|+...+..+.... .... ......+..+++|+++.| ..+|+++..++....
T Consensus 262 ~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~---~~~g-------i~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~ 330 (481)
T 4e1o_A 262 ELGPICAREGLWLHIDAAYAGTAFLCPEFRG---FLKG-------IEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQ 330 (481)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGGGGSGGGGG---GGTT-------GGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHT
T ss_pred HHHHHHHHcCCeEEeehhhHHHHHhChhhHH---HhcC-------cccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHH
Confidence 6999999999999999999865333222111 1110 112245567999999854 567888876665422
Q ss_pred HHHHhcccc--------------------cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee
Q 043923 294 AATKMSSFG--------------------LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL 352 (469)
Q Consensus 294 ~~~~~~~~~--------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~ 352 (469)
.+.....+. ....+.++++...+. .+.+++..++..++.+++.+.|++. |+++.
T Consensus 331 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 405 (481)
T 4e1o_A 331 TFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVRNDPSFEIP 405 (481)
T ss_dssp TTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTCTTEECC
T ss_pred HhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 111110110 012344555555442 3345677788888899999999987 88887
Q ss_pred cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-C-CHHHHHHHHHHHHHHHHh
Q 043923 353 KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M-SEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 353 ~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~-~~e~i~~~l~~L~~~l~~ 430 (469)
.+....++++.++... ....++.+++.++..+.+.|+... +..++|+++.. . +++++++++++|++++++
T Consensus 406 ~~~~~~~v~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 406 AKRHLGLVVFRLKGPN-----SLTENVLKEIAKAGRLFLIPATIQ---DKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp SCCCSSEEEEEESSCH-----HHHHHHHHHHHHHCSSBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCceeEEEEEeCCch-----HHHHHHHHHHHhCCeEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6555577788875311 223467777776633555554322 35689999865 2 789999999999999876
Q ss_pred hc
Q 043923 431 IT 432 (469)
Q Consensus 431 ~~ 432 (469)
.-
T Consensus 478 l~ 479 (481)
T 4e1o_A 478 IL 479 (481)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-22 Score=203.27 Aligned_cols=322 Identities=12% Similarity=0.105 Sum_probs=221.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCC-----CCCcEEEeCChHHHHHHHHHHhcC-------------------CCC
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTF-----DTSKIVLTAGATSANETLMFCLAE-------------------PGE 136 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~-----~~~~i~~t~G~~~al~~~~~~l~~-------------------~gd 136 (469)
.|...++..+|++++++++.+.+|..... .....++|+|+|+++..++.+... +++
T Consensus 104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 46666678899999999999887732100 013689999999999888877521 346
Q ss_pred EEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHH
Q 043923 137 AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLL 216 (469)
Q Consensus 137 ~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l 216 (469)
.|+++.+.|..+...+... |++++.+|++. ++ +|+++|+++|++....+..+.+|+++.++|+||.+-+ +++|
T Consensus 184 ~vi~s~~~H~s~~~~~~~~-g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~I 256 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLLG-GVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDEC 256 (475)
T ss_dssp EEEEETTSCHHHHHHHHHH-TCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred EEEECCCchHHHHHHHHHc-CCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHHH
Confidence 8999999999999888877 99999999873 56 9999999999875444445788899999999999866 6668
Q ss_pred HHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH-HHHH
Q 043923 217 VNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV-VAAA 295 (469)
Q Consensus 217 ~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~-~~~~ 295 (469)
+++|++||+++++|++|+...+..+.... .... ......+..+++|+++ ....+|++++.+... .+.+
T Consensus 257 ~~la~~~~~~lhvD~A~~~~~~~~~~~~~---~~~g-------i~~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~~~~ 325 (475)
T 3k40_A 257 GPVGNKHNLWIHVDAAYAGSAFICPEYRH---LMKG-------IESADSFNFNPHKWML-VNFDCSAMWLKDPSWVVNAF 325 (475)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSGGGGG---GGTT-------GGGCSEEEECHHHHSS-CCSSCEEEEESSGGGC----
T ss_pred HHHHHHhCCeEEEeHHhHHHHHhCHhhHH---HhcC-------cccCCEEEECchhccC-CCCceEEEEEeCHHHHHHHh
Confidence 99999999999999999864332221111 1110 1123456679999987 446788888865533 2221
Q ss_pred HHhcccc------------------c--CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC
Q 043923 296 TKMSSFG------------------L--VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS 354 (469)
Q Consensus 296 ~~~~~~~------------------~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~ 354 (469)
.....+. + ...+.++++...+. .+.+++..++..++.+++.+.|++. |+++..+
T Consensus 326 ~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~ 400 (475)
T 3k40_A 326 NVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVADSRFELAAE 400 (475)
T ss_dssp -----------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSC
T ss_pred cCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 1110000 0 01233444444442 3345677778888889999999988 8888766
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhc
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~~ 432 (469)
....++++.++.. .....++.+++.++.++.+.|+..+ +..++|++++. .+++++++++++|++++++..
T Consensus 401 ~~~~iv~f~~~~~-----~~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 401 INMGLVCFRLKGS-----NERNEALLKRINGRGHIHLVPAKIK---DVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp CBTTEEEEEESSC-----HHHHHHHHHHHHHHTSCBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCc-----hHHHHHHHHHHHhCCcEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5556777777531 1223467778776645555554433 25689999875 378999999999999988764
Q ss_pred c
Q 043923 433 T 433 (469)
Q Consensus 433 ~ 433 (469)
+
T Consensus 473 ~ 473 (475)
T 3k40_A 473 Q 473 (475)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=198.75 Aligned_cols=281 Identities=15% Similarity=0.156 Sum_probs=185.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~v 163 (469)
..+|++++|++++ . .+.|++ +++++|+..++.+++++||.|+++.|.|..+...+ ... |++++.+
T Consensus 60 ~~~l~~~la~~~g--------~-~~~v~~-~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 128 (421)
T 2ctz_A 60 VDVLEKRLAALEG--------G-KAALAT-ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL-GIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHT--------C-SEEEEE-SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHT-TCEEEEC
T ss_pred HHHHHHHHHHHhC--------C-CceEEe-cCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEEE
Confidence 5789999999985 2 234544 55599999999999999999999999999877665 455 9999988
Q ss_pred -eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc-cccccCCC
Q 043923 164 -QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY-SGTVFSSP 241 (469)
Q Consensus 164 -~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay-~~~~~~~~ 241 (469)
+.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|++||+++|+|++| +.. +...
T Consensus 129 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g-~~~~ 191 (421)
T 2ctz_A 129 SREE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-YLLR 191 (421)
T ss_dssp CTTC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-TSCC
T ss_pred CCCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccc-ccCC
Confidence 653 78899988864 8999999999999999999 666899999999999999999 522 2221
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecC--HHH----HHHHHH------------------
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSND--DMV----VAAATK------------------ 297 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~--~~~----~~~~~~------------------ 297 (469)
. ... +.++++.|+||.+|.+|.|+|++++.+ ..+ ...+..
T Consensus 192 ---~-~~~------------~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~ 255 (421)
T 2ctz_A 192 ---P-LAW------------GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELA 255 (421)
T ss_dssp ---G-GGG------------TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGH
T ss_pred ---c-ccc------------CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhH
Confidence 1 111 356888999999998999999988742 111 001100
Q ss_pred ---------hcccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee--c-----------
Q 043923 298 ---------MSSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL--K----------- 353 (469)
Q Consensus 298 ---------~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~--~----------- 353 (469)
...++ ..+++..+++...++. +..+.++..++.+++.+.|+++ ++... +
T Consensus 256 ~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~ 328 (421)
T 2ctz_A 256 FIVKARVDGLRDQGQALGPFEAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRA 328 (421)
T ss_dssp HHHHHHHTHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHcCcch-------HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHH
Confidence 01121 2344443343333332 2334445556778888889887 56543 2
Q ss_pred -----CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC---------------------CCCCeEEE
Q 043923 354 -----SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC---------------------TEPGWFRV 407 (469)
Q Consensus 354 -----~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~---------------------~~~~~iRi 407 (469)
...|..+.+.+++.. .....++.. ++..++.+..|..... ..++.+|+
T Consensus 329 ~~~~~~~~g~ivsf~l~~~~-----~~~~~~~~~-l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRl 402 (421)
T 2ctz_A 329 QKYFKGKPGAVLTFGLKGGY-----EAAKRFISR-LKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRL 402 (421)
T ss_dssp HHHHTTCCCSEEEEEETTHH-----HHHHHHHHT-CSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEE
T ss_pred HHhccCCCceEEEEEeCCCH-----HHHHHHHHh-CCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEE
Confidence 122456667776310 111122222 2233445555522110 12478999
Q ss_pred EeecCCHHHHHHHHHHHHHHH
Q 043923 408 CFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 408 ~~~~~~~e~i~~~l~~L~~~l 428 (469)
|++. ++++.+++.|++++
T Consensus 403 S~g~---e~~~~li~~l~~al 420 (421)
T 2ctz_A 403 SVGL---EHVEDLKAELKEAL 420 (421)
T ss_dssp ECCS---SCHHHHHHHHHHHT
T ss_pred EeCC---CCHHHHHHHHHHHh
Confidence 9974 67888888888875
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=200.15 Aligned_cols=255 Identities=14% Similarity=0.120 Sum_probs=177.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCEEEEcc-CCCcChHH------
Q 043923 81 LFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL---TAGATSANETLMFCLAEPGEAFLLPT-PYYPGFDR------ 150 (469)
Q Consensus 81 ~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~---t~G~~~al~~~~~~l~~~gd~Vl~~~-P~y~~~~~------ 150 (469)
.|+.. |..+|++.+|++++ .+..++ ++|+++|+..++.+++++||+|++++ |.|..+..
T Consensus 69 ~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 137 (427)
T 3i16_A 69 GYGDI-GRDSLDAVYARVFN----------TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITE 137 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSC
T ss_pred CCCHH-HHHHHHHHHHHHhC----------CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccc
Confidence 45544 67889999999986 233355 78889999999999999999999999 99988763
Q ss_pred -----HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEec----CCCCCCCCCCHHHHHHHHHHHH
Q 043923 151 -----DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN----PSNPLGTTMSRNELNLLVNIIT 221 (469)
Q Consensus 151 -----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~----P~NPtG~~~s~e~l~~l~~~~~ 221 (469)
.+... |++++.++.++ ++.+|++++++++++ .+++++|++++ |+||||.+ .++++|+++|+
T Consensus 138 ~~~~~~l~~~-G~~~~~v~~~~--~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~ 207 (427)
T 3i16_A 138 NSNMGSLKEF-GINYKQVDLKE--DGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVK 207 (427)
T ss_dssp CCSSCCTGGG-TCEEEECCCCT--TSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred cchHHHHHHc-CCEEEEecCcc--CCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHH
Confidence 34455 99999999864 346899999999872 12899999999 99999866 66888999999
Q ss_pred h--cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH-
Q 043923 222 E--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK- 297 (469)
Q Consensus 222 ~--~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~- 297 (469)
+ +|+++|+|++|+.+.+...+ . ..+.+++++|+||++|.+| .+.||++++++ +.+.+..
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~p----~------------~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~-li~~l~~~ 270 (427)
T 3i16_A 208 NIRKDIICFVDNCYGEFMDTKEP----T------------DVGADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEKTSYR 270 (427)
T ss_dssp HHCTTSEEEEECTTTTTSSSSCG----G------------GGTCSEEEEETTSGGGTTTCCSCEEEEECHH-HHHHHHHH
T ss_pred HhCCCCEEEEECCCccccccCCc----c------------ccCCeEEEecCcccCCCCCCceEEEEEECHH-HHHHHHHh
Confidence 9 99999999999875433221 1 1145688999999998555 56799999654 4444433
Q ss_pred hcc--ccc-CcH-HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce----EEEEEecccccc
Q 043923 298 MSS--FGL-VSS-QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG----LFCWVDMRHLLR 369 (469)
Q Consensus 298 ~~~--~~~-~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g----~~~~v~~~~~~~ 369 (469)
... .+. .++ +. ++..+++. ...+..+.++..++...+.+.|+++|++|.|..+. ..+.+.+.+.
T Consensus 271 ~~~~~~g~~~~~~~~--~a~~~l~g----l~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~~-- 342 (427)
T 3i16_A 271 LTVPGIGGECGSTFG--VVRSMYQG----LFLAPHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFNDK-- 342 (427)
T ss_dssp HSCTTTGGGCCCCTT--CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSSH--
T ss_pred cccCccCccCCccHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECCH--
Confidence 221 111 111 11 11122221 12245667778888899999999999988665332 2566666531
Q ss_pred cCChhHHHHHHHHHHH
Q 043923 370 SNTFEAEMELWKKIVY 385 (469)
Q Consensus 370 ~~~~~~~~~l~~~ll~ 385 (469)
+....+++.+..
T Consensus 343 ----~~~~~f~~~l~~ 354 (427)
T 3i16_A 343 ----DKLIEFCKGIQT 354 (427)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhh
Confidence 333456665543
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=194.23 Aligned_cols=320 Identities=12% Similarity=0.080 Sum_probs=201.4
Q ss_pred CeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
++|++..+.+.+++..+. ++.+. +.. ..|.+..+..++++++|++++ . +++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~-a~~~~-------------~~~-~~~~~~~~~~~l~~~la~~~~--------~--~~~i~~~ 56 (390)
T 3b8x_A 2 HMINYPLASSTWDDLEYK-AIQSV-------------LDS-KMFTMGEYVKQYETQFAKTFG--------S--KYAVMVS 56 (390)
T ss_dssp ---CBCSCCCCCCHHHHH-HHHHH-------------HHH-TCCSSCHHHHHHHHHHHHHHT--------C--SEEEEES
T ss_pred CceeccCCCCCCCHHHHH-HHHHH-------------HHc-CCCCCChHHHHHHHHHHHHHC--------C--CcEEEEC
Confidence 355555555555655444 33331 111 235556678999999999986 2 2567777
Q ss_pred ChHHHHHHHHHHh-------cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 119 GATSANETLMFCL-------AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 119 G~~~al~~~~~~l-------~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
++++|+..++.++ .++||.|+++.|+|..+...+... |++++.++++++ ++.+|++++++++++ +
T Consensus 57 sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~ 128 (390)
T 3b8x_A 57 SGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQY-GLRVKFVDIDIN-TLNIDIESLKEAVTD------S 128 (390)
T ss_dssp CHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECBCTT-TCSBCHHHHHHHCCT------T
T ss_pred CHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEecCcc-ccCcCHHHHHHHhCc------C
Confidence 7788999999998 789999999999999999888877 999999998753 478999999998864 7
Q ss_pred eeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCc
Q 043923 192 VKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLS 271 (469)
Q Consensus 192 ~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~S 271 (469)
+++|+++| ++|...+ +++|.++|++||+++|+|++|+....... ..+ .. ..+...+....+
T Consensus 129 ~~~v~~~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~-g~-------~~~~~~~s~~~~ 189 (390)
T 3b8x_A 129 TKAILTVN---LLGNPNN---FDEINKIIGGRDIILLEDNCESMGATFNN-----KCA-GT-------FGLMGTFSSFYS 189 (390)
T ss_dssp EEEEEEEC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTCTTCEETT-----EET-TS-------SSSEEEEECCTT
T ss_pred CeEEEEEC---CccChhh---HHHHHHHHHHcCCEEEEECcCcccCEECC-----ccc-cc-------ccceEEEEccCC
Confidence 89988875 4555444 66789999999999999999983211111 011 00 011112222335
Q ss_pred cccCCCcceEEEEEecCHHHHHHHHHhcccc-----------------------------c----CcHHHHHHHHHHhcC
Q 043923 272 KDLGLPGFRVGAIYSNDDMVVAAATKMSSFG-----------------------------L----VSSQTQYLLSALLSD 318 (469)
Q Consensus 272 K~~g~~GlRiG~li~~~~~~~~~~~~~~~~~-----------------------------~----~s~~~q~~~~~~l~~ 318 (469)
|.++ +|. .|+++++++.+.+.+......+ . .+.+...++...+
T Consensus 190 k~~~-~g~-gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-- 265 (390)
T 3b8x_A 190 NHIA-TME-GGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-- 265 (390)
T ss_dssp SSSC-SSS-CEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH--
T ss_pred CCCc-cCC-ceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH--
Confidence 6654 343 3999997655544333221110 0 2333333333322
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC--CceE-EEEEecccccccCChhHHHHHHHHHHHhCCeEEeC-
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS--NAGL-FCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISP- 393 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~--~~g~-~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~p- 393 (469)
+++++..++.++.++++.+.|+++ ++++..+ .+++ .+++.++.... .+..++.+.| .++||.+++
T Consensus 266 -----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~L-~~~gI~v~~~ 335 (390)
T 3b8x_A 266 -----KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSG----VIRKQLVENL-NSAGIECRPI 335 (390)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSC----CCHHHHHHHH-HHTTBCCBCS
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCc----ccHHHHHHHH-HHCCCCeeee
Confidence 235566777778888899999887 6666543 2333 24555552100 1123455555 467999986
Q ss_pred --CCCCCC-C--C-----------------CCeEEEEeec-CCHHHHHHHHHHH
Q 043923 394 --GSSCHC-T--E-----------------PGWFRVCFAN-MSEDTLKLSMQRL 424 (469)
Q Consensus 394 --g~~f~~-~--~-----------------~~~iRi~~~~-~~~e~i~~~l~~L 424 (469)
|+.+.. . . .+.+||++.. +++++++++++.|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 336 VTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred cCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 322111 0 0 1359999976 5999999998876
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-22 Score=199.10 Aligned_cols=254 Identities=15% Similarity=0.115 Sum_probs=177.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCEEEEcc-CCCcChHH-----
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL---TAGATSANETLMFCLAEPGEAFLLPT-PYYPGFDR----- 150 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~---t~G~~~al~~~~~~l~~~gd~Vl~~~-P~y~~~~~----- 150 (469)
..|+.. +..+|++.+|++++ .+..++ ++|+++|+..++.+++++||.|+++. |.|..+..
T Consensus 54 ~~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~ 122 (409)
T 3jzl_A 54 YGYDDE-GRDTLERVYATVFK----------TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIR 122 (409)
T ss_dssp TCTTCH-HHHHHHHHHHHHHT----------CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSS
T ss_pred CCCChh-HHHHHHHHHHHHhC----------CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcc
Confidence 346554 57889999999885 334455 88999999999999999999999998 99998874
Q ss_pred -----HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEec----CCCCCCCCCCHHHHHHHHHHHH
Q 043923 151 -----DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN----PSNPLGTTMSRNELNLLVNIIT 221 (469)
Q Consensus 151 -----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~----P~NPtG~~~s~e~l~~l~~~~~ 221 (469)
.++.. |++++.++.++ ++.+|++++++++++ ++++|++++ |+||||.+ .++++|+++|+
T Consensus 123 g~~~~~l~~~-G~~~~~v~~~~--~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~ 190 (409)
T 3jzl_A 123 KQGQGSLKDF-HIGYSSVPLLE--NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVK 190 (409)
T ss_dssp SSSSSCTGGG-TCEEEECCCCT--TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHH
T ss_pred cchhhHHHHc-CCEEEEeCCCC--CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHH
Confidence 33455 99999999864 467899999998864 899999999 99999876 46778999999
Q ss_pred h--cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHh
Q 043923 222 E--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKM 298 (469)
Q Consensus 222 ~--~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~ 298 (469)
+ ||+++|+|++|+.+++...+ . ..+.+++++|+||.+|.+| .+.||++++++.+.......
T Consensus 191 ~~~~~~~livD~a~~~~~~~~~p----~------------~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~ 254 (409)
T 3jzl_A 191 NINPEVIVFVDNCYGEFVEYQEP----P------------EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRL 254 (409)
T ss_dssp HHCTTCEEEEECTTCTTTSSCCS----G------------GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHH
T ss_pred hhCCCCEEEEeCCcccccccCCc----c------------ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHh
Confidence 9 99999999999875433221 1 1145688999999998555 44699999644443333322
Q ss_pred cc--cc--cCcHHH-HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce----EEEEEecccccc
Q 043923 299 SS--FG--LVSSQT-QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG----LFCWVDMRHLLR 369 (469)
Q Consensus 299 ~~--~~--~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g----~~~~v~~~~~~~ 369 (469)
.. .+ ..+.+. ..++...+ .....++++..++..++.+.|+++|+++.+..+. ..+.+.+++.
T Consensus 255 ~~~~~g~~~g~~~~~~~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~~-- 325 (409)
T 3jzl_A 255 TTPGIGREAGASLYSLLEMYQGF-------FLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNK-- 325 (409)
T ss_dssp SCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSCH--
T ss_pred ccccccccccccHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCCH--
Confidence 21 11 111111 22222222 2245566777888899999999999988654321 2555666531
Q ss_pred cCChhHHHHHHHHHHH
Q 043923 370 SNTFEAEMELWKKIVY 385 (469)
Q Consensus 370 ~~~~~~~~~l~~~ll~ 385 (469)
+....+++.+..
T Consensus 326 ----~~~~~~~~~L~~ 337 (409)
T 3jzl_A 326 ----EKMVAFAQAIQA 337 (409)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHh
Confidence 334456666543
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=199.22 Aligned_cols=289 Identities=14% Similarity=0.139 Sum_probs=181.5
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHH-hcCCCCEEEEccCCCcChHHHHh----hhCCCEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFC-LAEPGEAFLLPTPYYPGFDRDLK----WRTGVEIV 161 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~-l~~~gd~Vl~~~P~y~~~~~~~~----~~~g~~~~ 161 (469)
|..++.+++.+.+.+.+| ++++++++++|++.++..+..+ ..++||+|+++.|+|+.+...+. .. |++++
T Consensus 105 g~~~~~~~~~~~la~~~g----~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~-G~~v~ 179 (438)
T 1wyu_A 105 GVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAV-GAKLL 179 (438)
T ss_dssp HHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHT-TCEEE
T ss_pred hHHHHHHHHHHHHHHHhC----CCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHC-CCEEE
Confidence 444444444444444433 5677899999999443333333 24789999999999998876553 35 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecc-ccccccCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEI-YSGTVFSS 240 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Dea-y~~~~~~~ 240 (469)
.++.+ ++.+|+++ ++ +++++|++++| ||||.+.+ +++|+++|+++|+++|+|.. .+ ++.
T Consensus 180 ~v~~~---~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a---~g~ 239 (438)
T 1wyu_A 180 TLPLE---GGRTPLPE----VG------EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLS---LGV 239 (438)
T ss_dssp EECCB---TTBCCCCC----CC------TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG---GGT
T ss_pred EEcCc---CCccCHHH----hC------CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh---ccC
Confidence 99873 24567665 33 27999999999 99999987 55688899999999996632 21 221
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCcccc----CCCcceEEEEEecCHHHHHHH---------------------
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL----GLPGFRVGAIYSNDDMVVAAA--------------------- 295 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~----g~~GlRiG~li~~~~~~~~~~--------------------- 295 (469)
.. ....+ +..+++.| +|.| ++.|.++||++++++.+....
T Consensus 240 ~~--~~~~~------------g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~ 304 (438)
T 1wyu_A 240 LK--PPGAY------------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQ 304 (438)
T ss_dssp BC--CHHHH------------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCG
T ss_pred cC--CCccC------------CCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeecc
Confidence 11 11112 23355555 5654 356779999999655332210
Q ss_pred ------HHhcccccC---cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecc
Q 043923 296 ------TKMSSFGLV---SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMR 365 (469)
Q Consensus 296 ------~~~~~~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~ 365 (469)
+.......+ +.+....+...+.... ...+++..+++.++++++.+.|+++ |+++..+.. +|.++.+.
T Consensus 305 ~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~ 381 (438)
T 1wyu_A 305 AREQYIRRAKAKSNITTNAQLTALMGAMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFNEFALA 381 (438)
T ss_dssp GGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCSEEEEE
T ss_pred ccccccchhcccCCccchHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC-eEEEEEEe
Confidence 000111111 1222211111122111 2336677888888999999999998 898876533 44333332
Q ss_pred cccccCChhHHHHHHHHHHHhCCeEE--eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 366 HLLRSNTFEAEMELWKKIVYDVKLNI--SPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 366 ~~~~~~~~~~~~~l~~~ll~~~GI~v--~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
.. .+..+++++|+ ++||.+ .++..|. ++++|++++. .+++++++++++|++++
T Consensus 382 ~~------~~~~~~~~~L~-~~gi~v~~~~~~~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 382 LP------KDPEAVRRALA-ERGFHGATPVPREYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp CS------SCHHHHHHHHH-HTTCCCCEECCTTSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CC------CCHHHHHHHHH-HCCceeccccccccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 11 12335677776 459999 7777664 6799999985 38999999999998764
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=197.25 Aligned_cols=254 Identities=16% Similarity=0.111 Sum_probs=176.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCEEEEcc-CCCcChHH-----
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL---TAGATSANETLMFCLAEPGEAFLLPT-PYYPGFDR----- 150 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~---t~G~~~al~~~~~~l~~~gd~Vl~~~-P~y~~~~~----- 150 (469)
..|+.. |..+|++.+|++++ .+..++ ++|+++|+..++.++++|||+|++++ |.|..+..
T Consensus 69 y~Y~~~-g~~~Le~~lA~l~g----------~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~ 137 (427)
T 3hvy_A 69 YGYNDI-GRDSLDRVYANIFN----------TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMD 137 (427)
T ss_dssp TCTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCC
T ss_pred CCCCch-hHHHHHHHHHHHhC----------CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccc
Confidence 345554 67889999999885 344455 78889999999999999999999999 99988763
Q ss_pred ------HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEec----CCCCCCCCCCHHHHHHHHHHH
Q 043923 151 ------DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN----PSNPLGTTMSRNELNLLVNII 220 (469)
Q Consensus 151 ------~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~----P~NPtG~~~s~e~l~~l~~~~ 220 (469)
.++.. |++++.++.+ ++.+|++++++++++ .+++++|++++ |+||||.+ .++++|+++|
T Consensus 138 ~~~~~~~l~~~-G~~~~~v~~~---~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia 206 (427)
T 3hvy_A 138 DSKKVGSLREY-GVKYKMVDLK---DGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSI 206 (427)
T ss_dssp TTCCSCCTGGG-TCEEEECCCB---TTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHH
T ss_pred cchhhhHHHHc-CCEEEEecCC---CCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccH---HHHHHHHHHH
Confidence 34445 9999999872 457899999999873 12899999999 99999866 5688899999
Q ss_pred Hh--cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH
Q 043923 221 TE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK 297 (469)
Q Consensus 221 ~~--~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~ 297 (469)
++ +|+++|+|++|+.+.+...+ . ..+.+++++|+||++|.+| .+.||++++++ +.+.+..
T Consensus 207 ~~~~~g~~livD~a~~~~~~~~~p----~------------~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~-li~~l~~ 269 (427)
T 3hvy_A 207 REVNENVIVFVDNCYGEFVEEKEP----T------------DVGADIIAGSLIKNIGGGIATTGGYIAGKEE-YVTQATF 269 (427)
T ss_dssp HHHCSSSEEEEECTTCTTTSSSCG----G------------GGTCSEEEEETTSGGGTTTCCSCEEEEECHH-HHHHHHH
T ss_pred HHhCCCCEEEEECCccccccCCCC----c------------ccCCeEEEECCcccccccccceEEEEEECHH-HHHHHHH
Confidence 99 89999999999865433221 1 1145688999999998544 45699998544 4444433
Q ss_pred h-cc--ccc-CcH-HH-HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce----EEEEEecccc
Q 043923 298 M-SS--FGL-VSS-QT-QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG----LFCWVDMRHL 367 (469)
Q Consensus 298 ~-~~--~~~-~s~-~~-q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g----~~~~v~~~~~ 367 (469)
. .. .+. .++ +. ..++...+ .....+.++..++..++.+.|+++|+++.+..+. ..+.+.+.+.
T Consensus 270 ~~~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~~~ 342 (427)
T 3hvy_A 270 RVTVPGIGGECGSTFGVMRSLYEGL-------FMAPHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFNDE 342 (427)
T ss_dssp HHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECSSH
T ss_pred HhhcCCcccccCCCHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCCCH
Confidence 2 21 111 111 22 22222222 1234566677888899999999999988665332 2666766531
Q ss_pred cccCChhHHHHHHHHHHH
Q 043923 368 LRSNTFEAEMELWKKIVY 385 (469)
Q Consensus 368 ~~~~~~~~~~~l~~~ll~ 385 (469)
+....+++.+..
T Consensus 343 ------~~~~~f~~~l~~ 354 (427)
T 3hvy_A 343 ------KKLIDFIKGIQT 354 (427)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhcc
Confidence 333455555543
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=198.80 Aligned_cols=345 Identities=15% Similarity=0.152 Sum_probs=210.7
Q ss_pred CCCeeeeeccccc--c--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAENQ--L--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+... + .++.+.+++.+..... .+.....|+. ....+|++++++.+.+..+ ...+
T Consensus 62 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~--------~~~~~~~~~~-~~~~~l~~~la~~l~~~~~----~~~~ 128 (472)
T 1ohv_A 62 GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVS--------TFINRPALGI-LPPENFVEKLRESLLSVAP----KGMS 128 (472)
T ss_dssp SCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHH--------HHHCCCCTTT-SCBTTHHHHHHHTGGGGCC----TTCC
T ss_pred CCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhc--------cccccccccc-ccHHHHHHHHHHHHHHhCC----CCcC
Confidence 3468999876432 3 3566777776631100 0001112432 2457899999997765533 3578
Q ss_pred cEEEeCChHHHHHHHHHHhc--------C-----------------CC---CEEEEccCCCcChHHHHhhhCCCE-----
Q 043923 113 KIVLTAGATSANETLMFCLA--------E-----------------PG---EAFLLPTPYYPGFDRDLKWRTGVE----- 159 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--------~-----------------~g---d~Vl~~~P~y~~~~~~~~~~~g~~----- 159 (469)
.|++++|+++|+..+++.+. . +| +.|++.++.|+++...+....|..
T Consensus 129 ~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~ 208 (472)
T 1ohv_A 129 QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKI 208 (472)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHT
T ss_pred EEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCcccccc
Confidence 99999999999999998873 1 45 899999999988765543222321
Q ss_pred --------EEEeeccC---CCC--c-----ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHH
Q 043923 160 --------IVPIQCTS---LNG--F-----QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNII 220 (469)
Q Consensus 160 --------~~~v~~~~---~~~--~-----~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~ 220 (469)
.+++|... ... + ..|+++|+++|++....+.++++|++...+|++|. ..+.+.+++|.++|
T Consensus 209 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~ 288 (472)
T 1ohv_A 209 DIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIS 288 (472)
T ss_dssp TSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHH
T ss_pred CCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHH
Confidence 12232110 000 1 12578888888653221225777666655788996 56899999999999
Q ss_pred HhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc
Q 043923 221 TEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300 (469)
Q Consensus 221 ~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~ 300 (469)
++||+++|+||+|.++.+.+. ......+ . . ...+-+.||||++ +.| ||++ ++. +.. ......
T Consensus 289 ~~~g~lli~DEv~~g~g~~g~-~~~~~~~-g--------v-~~~~Di~t~sK~~-l~G---G~~~-~~~-~~~-~~~~~~ 350 (472)
T 1ohv_A 289 RKHGCAFLVDEVQTGGGSTGK-FWAHEHW-G--------L-DDPADVMTFSKKM-MTG---GFFH-KEE-FRP-NAPYRI 350 (472)
T ss_dssp HHTTCEEEEECTTTTTTTTSS-SSGGGGG-C--------C-SSCCSEEEECGGG-SSE---EEEE-CGG-GSC-SSSSSS
T ss_pred HHhCCEEEEeCcccCCCCCCC-chhcccc-C--------C-CCCCCEEEEcccc-ccC---CccC-chh-hcc-cccccc
Confidence 999999999999987433222 1121111 0 1 0001134899995 345 7766 333 321 111111
Q ss_pred c--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--C----CceecCCceEEEEEecccccccCC
Q 043923 301 F--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--G----ISCLKSNAGLFCWVDMRHLLRSNT 372 (469)
Q Consensus 301 ~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g----~~v~~~~~g~~~~v~~~~~~~~~~ 372 (469)
. ...+++++.++.++|+... + +...++++++++++.+.|+++ + +....+. |.+++++++..
T Consensus 351 ~~T~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~-g~~~~~~~~~~----- 419 (472)
T 1ohv_A 351 FNTWLGDPSKNLLLAEVINIIK---R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-GTFCSFDTPDE----- 419 (472)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-TTEEEEECSSH-----
T ss_pred cCccCccHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCC-ceEEEEEeCCh-----
Confidence 1 2357778777776664211 1 123455566666666666654 1 3323444 46677777631
Q ss_pred hhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 373 FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 373 ~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.....++..++ ++||.+.|+. .+++|++++. .+++++++++++|++++++.
T Consensus 420 -~~~~~~~~~l~-~~Gv~~~~~g------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 420 -SIRNKLISIAR-NKGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp -HHHHHHHHHHH-HTTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred -hHHHHHHHHHH-HCCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 22346777777 5699999852 4689998875 49999999999999998753
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=207.27 Aligned_cols=312 Identities=13% Similarity=0.038 Sum_probs=196.0
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH-HhhhCCCEEEEee
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD-LKWRTGVEIVPIQ 164 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~-~~~~~g~~~~~v~ 164 (469)
.-+.++++.+|++++ . ...+++++|+++++..++.+++++||.|+++.|+|.++... +... |++++.++
T Consensus 173 ~~i~e~e~~lA~~~g--------a-e~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~-Ga~~v~v~ 242 (730)
T 1c4k_A 173 GPAVAAEKHAARVYN--------A-DKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMA-GGRPVYLQ 242 (730)
T ss_dssp THHHHHHHHHHHHTT--------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTT-CCEEEEEC
T ss_pred HHHHHHHHHHHHHHC--------C-CcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHC-CCEEEEEe
Confidence 346889999999886 2 34588999999999999999999999999999999988887 6666 99999888
Q ss_pred ccCCCCcc----cCHHHH-----HHHHHHH-Hhc--CCce-eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q 043923 165 CTSLNGFQ----ITETAI-----EEAYQLA-QKR--HLKV-KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDE 231 (469)
Q Consensus 165 ~~~~~~~~----~d~~~l-----~~~i~~~-~~~--~~~~-~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~De 231 (469)
.+.+ .|. +|++++ ++++++. ... .+++ +++++++| ||+|.+.+ +++|+++|++||+++|+||
T Consensus 243 ~~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDe 317 (730)
T 1c4k_A 243 TNRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDS 317 (730)
T ss_dssp EEEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEEC
T ss_pred CCcc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEc
Confidence 6532 333 688888 6666431 000 1112 88999999 58999987 5568999999999999999
Q ss_pred ccccc-ccCCCCc-cchhhhhhccccccCCcCCeEEEEccCccccCCCcceE-EEEEecCHHH--------HHHHHH---
Q 043923 232 IYSGT-VFSSPGF-VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDMV--------VAAATK--- 297 (469)
Q Consensus 232 ay~~~-~~~~~~~-~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRi-G~li~~~~~~--------~~~~~~--- 297 (469)
+|+.. .|..... .+.... ... +. +.++++++.|+||++ +|++. |++++++..+ ...+..
T Consensus 318 Ah~~~~~f~~~~~g~~~l~~-~~~---g~-D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~ 390 (730)
T 1c4k_A 318 AWVGYEQFIPMMRNSSPLLI-DDL---GP-EDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFN 390 (730)
T ss_dssp TTCCGGGSSGGGGGGCTTSC-CCC---CT-TSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHH
T ss_pred ccccccccCcccCCcCcccc-ccc---CC-CCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHH
Confidence 99743 2332100 011111 000 00 234679999999986 55554 5554443322 111111
Q ss_pred hcccccCcHHHHHHH---HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh--cCCceecCC-----------------
Q 043923 298 MSSFGLVSSQTQYLL---SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK--AGISCLKSN----------------- 355 (469)
Q Consensus 298 ~~~~~~~s~~~q~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~--~g~~v~~~~----------------- 355 (469)
....++++.+...++ ...+... ...+..+++.++.+.+++.|++ .|+++..+.
T Consensus 391 ~~~stsp~~~~iaal~aA~~~l~~~-----~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~ 465 (730)
T 1c4k_A 391 LFMSTSPFYPMYAALDVNAAMQEGE-----AGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMAN 465 (730)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHSHH-----HHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTT
T ss_pred HhCCCCCcHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccc
Confidence 111122333333332 2233221 1233455666677778888887 377765432
Q ss_pred --------------------ce-EE-----EEEeccccc------ccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCC
Q 043923 356 --------------------AG-LF-----CWVDMRHLL------RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 403 (469)
Q Consensus 356 --------------------~g-~~-----~~v~~~~~~------~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~ 403 (469)
.+ ++ +.+.+++.. .... ....++.+.| +++||.+... +.+
T Consensus 466 ~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g-~~~~~l~~~L-~e~GI~v~~~------~~~ 537 (730)
T 1c4k_A 466 NIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFG-VPATIVANYL-RDHGIIPEKS------DLN 537 (730)
T ss_dssp CGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSC-CCHHHHHHHH-HHTTCCCSEE------CSS
T ss_pred cchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccC-CCHHHHHHHH-HHCCcEEEEC------CCC
Confidence 11 12 455554210 0001 1223455555 4569988653 245
Q ss_pred eEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 404 WFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 404 ~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
.+|++++. .++++++.++++|+++.+.+.
T Consensus 538 ~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 538 SILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 79998875 489999999999999987664
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-24 Score=215.63 Aligned_cols=333 Identities=14% Similarity=0.080 Sum_probs=205.9
Q ss_pred CCCeeeeeccccc--c--ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAENQ--L--SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
...+||+..+..+ + .++.+.+++.+.... .....|+. ....+|.+.|++++. ..+
T Consensus 99 G~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~-----------~~~~~~~~-~~~~~Lae~L~~~~p---------~~~ 157 (465)
T 2yky_A 99 GHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV-----------GLNLSTQT-ENEALFAEAVCDRFP---------SID 157 (465)
Confidence 3458999887653 3 246666666553211 01123432 344677777777662 357
Q ss_pred cEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhh---hCCC--EEEEeeccCCCCcccCHHHHHHHHHHH
Q 043923 113 KIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKW---RTGV--EIVPIQCTSLNGFQITETAIEEAYQLA 185 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~---~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~ 185 (469)
.+++++|+++|+..+++.+. ..++.|++.+++|.++...+.. ..|+ .++.+|. .|++++++++++.
T Consensus 158 ~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~ 230 (465)
T 2yky_A 158 LVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRH 230 (465)
Confidence 89999999999999998753 3458999999999876543320 1133 3333332 2678888888642
Q ss_pred HhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 186 QKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
+.++++|++...++++|.+ .+.+.+++|.++|++||+++|+||+|. +.. +. ... .+. .+..
T Consensus 231 ---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~-~~a-~~~-----------~gv~ 292 (465)
T 2yky_A 231 ---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SG-GGA-QEM-----------LGIS 292 (465)
Confidence 1267776665435669965 468889999999999999999999998 522 11 111 111 1222
Q ss_pred EEEccCccccCCCcceEEEEEecCHHHHHHHHH-------hcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRH 337 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 337 (469)
.-+.||||++| .|+|+||++++++.+ +.+.. ....+..+++++.++.+.|+...- +...+++.++.
T Consensus 293 pDi~t~sK~lg-~G~piG~v~~~~~i~-~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-----~~~~~~~~~~~ 365 (465)
T 2yky_A 293 ADLTTLGKYIG-GGMSFGAFGGRRDLM-ERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT-----RQAASDLSASG 365 (465)
Confidence 23458999999 699999999965543 33332 112223677788777776653211 12233444444
Q ss_pred HHHHHHHHhc----CCceecCCceEEEEEeccc-cccc------CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEE
Q 043923 338 RKLVSGLEKA----GISCLKSNAGLFCWVDMRH-LLRS------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 406 (469)
Q Consensus 338 ~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~-~~~~------~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iR 406 (469)
+++.+.|+++ ++....+..|.++|+.+++ .... .+......++..++ ++||.+.|+. |. .
T Consensus 366 ~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~-~~------~- 436 (465)
T 2yky_A 366 DRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRG-MY------A- 436 (465)
Confidence 4455544443 4333334456888888764 1100 00011335667776 5699999876 32 1
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 407 VCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 407 i~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+++. ++++++++++++|++++++..
T Consensus 437 ~s~~-~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 437 LSLE-IADAGRDAFAEALADFIGEQR 461 (465)
Confidence 5554 589999999999999987653
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=191.34 Aligned_cols=233 Identities=16% Similarity=0.147 Sum_probs=161.6
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEcc-CCCcChHHHH----------hhhCCCEEEEeeccCCCCcccCHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPT-PYYPGFDRDL----------KWRTGVEIVPIQCTSLNGFQITETAIEEAYQ 183 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~-P~y~~~~~~~----------~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 183 (469)
+++ |+++|+..++.+++++||.|+++. |.|..+...+ +.. |++++.++.++ ++.+|+++++++++
T Consensus 88 ~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~-G~~~~~v~~~~--~~~~d~e~l~~~l~ 163 (431)
T 3ht4_A 88 QII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY-NIGYNAVPLTE--GGLVDFEAVAAAIH 163 (431)
T ss_dssp TSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG-TCEEEECCBCT--TSSBCHHHHHHHCC
T ss_pred eee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHc-CCEEEEeCCCC--CCCcCHHHHHhhcC
Confidence 355 668999999999999999999998 9999988654 335 99999999874 46789999999886
Q ss_pred HHHhcCCceeEEEEe-cCCCCCCCCCCHHHHHHHHHHHHh--cCeEEEEeccccccccCCCCccchhhhhhccccccCCc
Q 043923 184 LAQKRHLKVKGVLVT-NPSNPLGTTMSRNELNLLVNIITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQV 260 (469)
Q Consensus 184 ~~~~~~~~~~~vvl~-~P~NPtG~~~s~e~l~~l~~~~~~--~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~ 260 (469)
+ ++++|+++ +|+||+|.+++.+++++|+++|++ +|+++|+||+|+.+.+.... ..+
T Consensus 164 ~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~----~~~----------- 222 (431)
T 3ht4_A 164 S------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP----CHV----------- 222 (431)
T ss_dssp T------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCG----GGT-----------
T ss_pred C------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCc----ccc-----------
Confidence 4 89999999 589999999999999999999999 99999999999976543321 111
Q ss_pred CCeEEEEccCccccCC-CcceEEEEEecCHHHHHHHHHhccc--cc--CcHHH-HHHHHHHhcCchhhHHHHHHHHHHHH
Q 043923 261 WNRVHIVYSLSKDLGL-PGFRVGAIYSNDDMVVAAATKMSSF--GL--VSSQT-QYLLSALLSDKKFTQNYISENKKRLK 334 (469)
Q Consensus 261 ~~~~i~i~S~SK~~g~-~GlRiG~li~~~~~~~~~~~~~~~~--~~--~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~l~ 334 (469)
+..++++|+||++|. .+...||++++++.+.......... +. .+++. ..++...+ .....+.++..
T Consensus 223 -g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~ 294 (431)
T 3ht4_A 223 -GADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGF-------FLAPHVAGQAL 294 (431)
T ss_dssp -TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHH-------HHHHHHHHHHH
T ss_pred -CCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHh-------hhHHHHHHHHH
Confidence 345889999999652 1133399999654443332222221 11 11111 12222222 12345566777
Q ss_pred HHHHHHHHHHHhcCCceecCCc----eEEEEEecccccccCChhHHHHHHHHHHHh
Q 043923 335 QRHRKLVSGLEKAGISCLKSNA----GLFCWVDMRHLLRSNTFEAEMELWKKIVYD 386 (469)
Q Consensus 335 ~~~~~l~~~L~~~g~~v~~~~~----g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~ 386 (469)
++.+++.+.|+++|+++.+... +..+.+.+++. +....+++.+...
T Consensus 295 ~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~------~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 295 KGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK------DRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHhc
Confidence 7888899999999988765432 23556666531 2334566665543
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-20 Score=197.13 Aligned_cols=308 Identities=10% Similarity=0.027 Sum_probs=193.1
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
-..++++.++++++ . .+.+++++|+++++..++.+++++||.|+++.|+|.++...+... |++++.++.+
T Consensus 206 ~v~~~ee~la~l~G--------~-d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~-G~~~v~v~~~ 275 (755)
T 2vyc_A 206 AFGESEKYAARVFG--------A-DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLT-GAKPVYMVPS 275 (755)
T ss_dssp HHHHHHHHHHHHHT--------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHH-CCEEEEECCC
T ss_pred HHHHHHHHHHHHhC--------C-CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeCC
Confidence 35777888888875 2 356889999999999999999999999999999999998888877 9999999876
Q ss_pred CCCCcc----c-----CHHHHHHHHHHHH----hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc
Q 043923 167 SLNGFQ----I-----TETAIEEAYQLAQ----KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233 (469)
Q Consensus 167 ~~~~~~----~-----d~~~l~~~i~~~~----~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay 233 (469)
.+ .|. + |++++++++++.. ..+.++++++++|| ||+|.+.+ +++|+++|++||+++++||+|
T Consensus 276 ~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~ 350 (755)
T 2vyc_A 276 RN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAW 350 (755)
T ss_dssp BC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTT
T ss_pred CC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcC
Confidence 42 333 4 8999999997521 12234468999999 79999987 556899999999999999999
Q ss_pred cccc-cCCC--Cccchhhhh--hccccccCCcCCeEEEEccCccccCCCcce-EEEEEecCH--HH-----HHHHHHhcc
Q 043923 234 SGTV-FSSP--GFVSIMEIL--KDRNCENTQVWNRVHIVYSLSKDLGLPGFR-VGAIYSNDD--MV-----VAAATKMSS 300 (469)
Q Consensus 234 ~~~~-~~~~--~~~s~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~g~~GlR-iG~li~~~~--~~-----~~~~~~~~~ 300 (469)
+... ++.. +...+ .. .+. ..++++++.|+||++ +|++ .|++++++. .+ .+......
T Consensus 351 ~~~~~~~~~~~~~~~~--~g~~aD~------~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~- 419 (755)
T 2vyc_A 351 YGYARFNPIYADHYAM--RGEPGDH------NGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHA- 419 (755)
T ss_dssp CTTGGGCGGGTTSSSS--CSCCCCC------SSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTS-
T ss_pred chhcccCcccCCcchh--cCCcCCc------cCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhC-
Confidence 7532 3221 11111 11 010 236788999999986 5555 567766443 11 11222221
Q ss_pred cccCcHHHHH---HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-C---------CceecCC------------
Q 043923 301 FGLVSSQTQY---LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-G---------ISCLKSN------------ 355 (469)
Q Consensus 301 ~~~~s~~~q~---~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g---------~~v~~~~------------ 355 (469)
.++++.+... ++...+..... .+++++. .+..+.+++.|+++ + +++..+.
T Consensus 420 s~sp~~~~iaal~aA~~~l~~~gg-~~~~~~~----~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (755)
T 2vyc_A 420 TTSPLYAICASNDVAVSMMDGNSG-LSLTQEV----IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYD 494 (755)
T ss_dssp CSSCCHHHHHHHHHHHHHHSTHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhH-HHHHHHH----HHHHHHHHHHHHhccccccccccceeeccCchhccccccccccc
Confidence 1223443333 33344443211 3334443 33444444444443 2 3332221
Q ss_pred -------------------------------ce------EEEEEeccccc-cc---CChhHHHHHHHHHHHhCCeEEeCC
Q 043923 356 -------------------------------AG------LFCWVDMRHLL-RS---NTFEAEMELWKKIVYDVKLNISPG 394 (469)
Q Consensus 356 -------------------------------~g------~~~~v~~~~~~-~~---~~~~~~~~l~~~ll~~~GI~v~pg 394 (469)
.| .-+.+.+++.. .. +.-.+..++. ..|+++||.+...
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~-~~L~~~gI~~e~~ 573 (755)
T 2vyc_A 495 FADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVT-AWLGRHGIVPTRT 573 (755)
T ss_dssp GGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHH-HHHHTTTCCCSEE
T ss_pred cccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHH-HHHHHCCCEEeec
Confidence 11 12344454310 00 0001112344 4456789887532
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhc
Q 043923 395 SSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 395 ~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+.+.+|+.++. .++++++.++++|+++.+.+.
T Consensus 574 ------~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 574 ------TDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp ------CSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred ------CCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 35679999975 499999999999999987653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=182.22 Aligned_cols=312 Identities=12% Similarity=0.083 Sum_probs=185.8
Q ss_pred CCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEe
Q 043923 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (469)
Q Consensus 84 ~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v 163 (469)
+..-+.++++.+|++++ ....+++++|++.|+..++.+++++||.|+++.++|.++...+... |++++.+
T Consensus 193 ~~g~i~eaE~~lA~~fG---------a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~ls-Ga~pv~v 262 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMS-DVTPIYF 262 (715)
T ss_dssp TBTHHHHHHHHHHHHHT---------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHS-CCEEEEE
T ss_pred CcHHHHHHHHHHHHHhC---------CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHc-CCEEEEE
Confidence 33447899999999996 2456778999999999999999999999999999999999988877 9999999
Q ss_pred eccCCCCccc---------CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc
Q 043923 164 QCTSLNGFQI---------TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS 234 (469)
Q Consensus 164 ~~~~~~~~~~---------d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~ 234 (469)
+.+. +.|.+ |++.+++++++... ...++++++++| ||+|.+++.++ |+++|++++ +++||||+
T Consensus 263 ~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~---I~ela~~~~--livDEAH~ 334 (715)
T 3n75_A 263 RPTR-NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDF---IKKTLDVKS--IHFDSAWV 334 (715)
T ss_dssp CCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHH---HHHHCCCSE--EEEECTTC
T ss_pred eccc-cccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHH---HHHHhCcCc--EEEccccc
Confidence 8764 34554 89999999975210 012348999999 99999998665 666676663 79999998
Q ss_pred ccc-cCCCCccchhhhhhccccccCCcCCe-EEEEccCccccCCCcc-eEEEEEecCHHHHHHHHHhc---ccccCcHHH
Q 043923 235 GTV-FSSPGFVSIMEILKDRNCENTQVWNR-VHIVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKMS---SFGLVSSQT 308 (469)
Q Consensus 235 ~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~g~~Gl-RiG~li~~~~~~~~~~~~~~---~~~~~s~~~ 308 (469)
... |... ......+... ...+. ++++.|+||+++ |+ ..|++++++......++... ..++++.+.
T Consensus 335 ~~~~f~~~-~~~~~al~~g------~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~ 405 (715)
T 3n75_A 335 PYTNFSPI-YEGKCGMSGG------RVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGI 405 (715)
T ss_dssp TTGGGSGG-GTTSSTTSSS------CCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHH
T ss_pred cccccCCc-cccccccccC------cCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHH
Confidence 643 3321 1111111000 01234 366899999975 43 35888876542222222221 122244444
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-----C--CceecCC------------------------ce
Q 043923 309 QYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-----G--ISCLKSN------------------------AG 357 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-----g--~~v~~~~------------------------~g 357 (469)
.+++..+++... ...-.+.++++.+..+++++.|+++ | +++..++ +.
T Consensus 406 ~AsldaA~~~~~--~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~ 483 (715)
T 3n75_A 406 VASTETAAAMMK--GNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEH 483 (715)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSS
T ss_pred HHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCc
Confidence 443333321100 0012233445555555566655543 2 2322211 11
Q ss_pred EE-----EEEeccccc-cc----CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 043923 358 LF-----CWVDMRHLL-RS----NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKA 426 (469)
Q Consensus 358 ~~-----~~v~~~~~~-~~----~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~ 426 (469)
++ +.+.+++.. .. .. ... ..+.+.|+++||.+--.+ ..++-+-++- .++++++.++++|.+
T Consensus 484 ~~~Dp~Kl~i~~~~~~~~G~~~~~G-i~g-~~~~~~L~~~~I~~E~~d------~~~vl~l~s~g~~~~~~~~L~~aL~~ 555 (715)
T 3n75_A 484 MYLDPIKVTLLTPGMEKDGTMSDFG-IPA-SIVAKYLDEHGIVVEKTG------PYNLLFLFSIGIDKTKALSLLRALTD 555 (715)
T ss_dssp EEECTTEEEEECSCBCTTSCBCSSC-CCH-HHHHHHHHHTTCCCSEEE------TTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEcCCCCCCCccccCC-CcH-HHHHHHHHHCCCEEEecC------CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 11 334443210 00 01 111 234445578899876433 2344444432 388999999999998
Q ss_pred HHHhhc
Q 043923 427 FVDSIT 432 (469)
Q Consensus 427 ~l~~~~ 432 (469)
+-+...
T Consensus 556 ~~~~~~ 561 (715)
T 3n75_A 556 FKRAFD 561 (715)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 766543
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=163.79 Aligned_cols=289 Identities=13% Similarity=0.124 Sum_probs=188.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCC-CcEEE-eCChHHHHHHHHHHhcCC--CCEEEEccCCCcCh--HHHHhhhCCCEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDT-SKIVL-TAGATSANETLMFCLAEP--GEAFLLPTPYYPGF--DRDLKWRTGVEIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~-t~G~~~al~~~~~~l~~~--gd~Vl~~~P~y~~~--~~~~~~~~g~~~~ 161 (469)
+.+.|+.++++++ +++ ++|++ |+|+|+++++++..+..+ ||+|++..-.+.+. ...++.. |..++
T Consensus 60 ~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~-G~~~~ 130 (377)
T 3e77_A 60 INNTENLVRELLA--------VPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKF-GTINI 130 (377)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTT-SEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHh-CCceE
Confidence 4566777888876 433 56888 589999999999998765 89987766554332 2334445 88877
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.++.+. ++..+++.++.+++ +++++|.+++-.|.||.+.|. +|+++|+++++|.+.+ ++..
T Consensus 131 ~~~~~~--~~~~~~~~~~~~i~------~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~---~g~~ 191 (377)
T 3e77_A 131 VHPKLG--SYTKIPDPSTWNLN------PDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMSSN---FLSK 191 (377)
T ss_dssp CSCCCS--SSCSCCCGGGCCCC------TTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECTTT---TTSS
T ss_pred EeccCC--CcCCCCChHHhccC------CCccEEEEeCccCchheEchh--------hhccCCCEEEEEcccc---cCCC
Confidence 777753 33355555554443 388999999888899999985 3678999999999997 4433
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH-------------HHHHHHhcccccCcHHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV-------------VAAATKMSSFGLVSSQT 308 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~-------------~~~~~~~~~~~~~s~~~ 308 (469)
+ ..+..+ + +++.|..|.+|.+| +|+++..++.+ .........+++++...
T Consensus 192 ~-id~~~~------------~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~ 254 (377)
T 3e77_A 192 P-VDVSKF------------G--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFS 254 (377)
T ss_dssp C-CCGGGC------------S--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHH
T ss_pred C-Cchhhc------------C--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHH
Confidence 2 232222 3 36679999999777 56666643321 11111122244556555
Q ss_pred HHHHHHHhcCchhhHH--HHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CceEEEEEecccccccCChhHHHHHHH
Q 043923 309 QYLLSALLSDKKFTQN--YISENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLRSNTFEAEMELWK 381 (469)
Q Consensus 309 q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~----~~g~~~~v~~~~~~~~~~~~~~~~l~~ 381 (469)
.+++.++|+- +.+ -++...++.++..+++.+.|+++ |+.+.+. .++..+.+.+++..... .-+..+..
T Consensus 255 i~~l~~al~~---l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~--~~~~~~l~ 329 (377)
T 3e77_A 255 IYVMGLVLEW---IKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDD--ALEKRFLD 329 (377)
T ss_dssp HHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCH--HHHHHHHH
T ss_pred HHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCch--hHHHHHHH
Confidence 5555555432 122 25777788888889999999988 7764331 23345667776421100 11123445
Q ss_pred HHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 382 KIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 382 ~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+. ++||.+++|... .+.+|+|+.. .++++++.+++.|++++++.
T Consensus 330 ~l~-~~Gi~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 330 KAL-ELNMLSLKGHRS----VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp HHH-HTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HCCcEEeCCCCc----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 444 679999988532 3469999976 49999999999999998763
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-17 Score=161.72 Aligned_cols=288 Identities=11% Similarity=0.084 Sum_probs=185.5
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCC-CcEEE-eCChHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDT-SKIVL-TAGATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIV 161 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~-t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~ 161 (469)
.-+.+.|+.+|++++ ++. ++|++ |+|+|+++++++..++.+||+|++..-.+.+. ...++.. | ++.
T Consensus 72 ~~~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~-G-~v~ 141 (386)
T 3qm2_A 72 QVAEEAEQDFRDLLN--------IPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKY-C-APQ 141 (386)
T ss_dssp -CCHHHHHHHHHHHT--------CCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTT-S-EEE
T ss_pred HHHHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHh-C-CeE
Confidence 356899999999997 433 46888 69999999999999999999887554433222 2334445 8 888
Q ss_pred Eeecc-CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 162 PIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 162 ~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
.++.+ .+.++.+++++++.++++ ++++|.+++-.|.||.. .+.+++ . +|+++++|.+.+ ++
T Consensus 142 ~v~~~~~~~G~~~~~~~~~~~l~~------~t~lV~~~h~et~tG~~i~pi~~i---~-----~g~~~~vDa~qs---~g 204 (386)
T 3qm2_A 142 IIDAKITVDGKRAVKPMREWQLSD------NAAYLHYCPNETIDGIAIDETPDF---G-----PEVVVTADFSST---IL 204 (386)
T ss_dssp EEECEEEETTEEEECCGGGCCCCT------TCSCEEECSEETTTTEECCCCCCC---C-----TTCCEEEECTTT---TT
T ss_pred EEecCcccCCCCCCchHHHhhcCC------CCcEEEEECCcCCcCEecCchhhh---c-----CCCEEEEEcccc---cC
Confidence 88876 123433566666665543 78888888888889996 676664 2 799999999987 44
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHH-------------HHHHHhcccccCcH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVV-------------AAATKMSSFGLVSS 306 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~-------------~~~~~~~~~~~~s~ 306 (469)
..+ ..+..+ + +.+.|..|.+|.+| +|++++.+..+. ........+++.+.
T Consensus 205 ~~p-idv~~~------------~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v 267 (386)
T 3qm2_A 205 SAP-LDVSRY------------G--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPT 267 (386)
T ss_dssp SSC-CCGGGC------------S--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CC
T ss_pred CCC-CCcccc------------C--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcH
Confidence 332 332222 3 35579999998666 788877544310 11111112233444
Q ss_pred HHHHHHHHHhcCchhhHHH--HHHHHHHHHHHHHHHHHHHHhcCCcee--cC--CceEEEEEecccccccCChhHHHHHH
Q 043923 307 QTQYLLSALLSDKKFTQNY--ISENKKRLKQRHRKLVSGLEKAGISCL--KS--NAGLFCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~g~~v~--~~--~~g~~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
+...++.++++ ++.+. ++...++.++..+++.+.|+++++... .+ .+...+.+.+++. . .+ .++.
T Consensus 268 ~~i~~l~~Al~---~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~----~-~~-~~~~ 338 (386)
T 3qm2_A 268 FAWYLSGLVFK---WLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADN----T-LD-KVFL 338 (386)
T ss_dssp SHHHHHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSG----G-GH-HHHH
T ss_pred HHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCc----c-cc-HHHH
Confidence 44444444442 22222 577777888888999999998875211 11 2234566666631 1 11 2444
Q ss_pred HHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.. |+++||.+++|... .+.+|+|+.. .++++++++++.|+++.++.
T Consensus 339 ~~-L~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 339 EE-SFAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp HH-HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 54 56779999887543 2349999976 48999999999999998753
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=156.93 Aligned_cols=330 Identities=15% Similarity=0.146 Sum_probs=200.3
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCC--CCCcHHHHHHHHHHHHhHcCCCCCCC-CCc
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQD--YHGLPAFKKALVEFMSEIRGNKVTFD-TSK 113 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~Lr~aia~~l~~~~~~~~~~~-~~~ 113 (469)
+..++.|+-+..+.|+..+........+... .+.+.++..+ ..+ ..-+.+.|+.++++++ ++ +++
T Consensus 3 ~~~~~~f~pgpt~~~~~V~~a~~~~~~~~~~---~~~s~~~~~h-r~~~~~~~~~~~r~~la~ll~--------~~~~~~ 70 (361)
T 3m5u_A 3 AMRKINFSAGPSTLPLEILEQAQKELCDYQG---RGYSIMEISH-RTKVFEEVHFGAQEKAKKLYE--------LNDDYE 70 (361)
T ss_dssp -CCCEECCSSSCCCCHHHHHHHHHTSSSGGG---SSSCGGGSCS-SSHHHHHHHHHHHHHHHHHHT--------CCTTEE
T ss_pred ccceEeecCCCCCCcHHHHHHHHHHHHhccc---CCceeeccCC-CCHHHHHHHHHHHHHHHHHhC--------CCCCce
Confidence 3466788888877777665555443321100 0000000000 000 0224566777888876 43 457
Q ss_pred EEE-eCChHHHHHHHHHHhcCCCCEEEEc-cCCCcC-hHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCC
Q 043923 114 IVL-TAGATSANETLMFCLAEPGEAFLLP-TPYYPG-FDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 114 i~~-t~G~~~al~~~~~~l~~~gd~Vl~~-~P~y~~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
|++ |+|+|+++++++..+. +||++++. .-.|.. ....++.. |+++..++.+..+.+.++++. + |++
T Consensus 71 v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~-G~~v~~~~~~~~g~~~~~~~~-~--l~~------ 139 (361)
T 3m5u_A 71 VLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQIL-GVNVKTVASSEESNFDHIPRV-E--FSD------ 139 (361)
T ss_dssp EEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHT-TCCEEEEEECTTTTSCSCCCC-C--CCT------
T ss_pred EEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHc-CCceEEEecccCcCCCcCChh-h--cCC------
Confidence 887 9999999999999998 78865322 222221 22334555 899999998865434344444 3 543
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
++++|.+++..|.||...+. +++ +|+++++|.+.+ ++..+ ..+. +..+++.|.
T Consensus 140 ~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~---~g~~~-id~~--------------~~d~~~~s~ 192 (361)
T 3m5u_A 140 NADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSD---FFSRK-VDFS--------------NIALFYGGV 192 (361)
T ss_dssp TSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECGGG---TTSSC-CCCT--------------TEEEEEEET
T ss_pred CCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEcccc---cCCCC-CCcc--------------cCCEEEEec
Confidence 78999999888899998762 233 499999999987 44332 2211 234677899
Q ss_pred ccccCCCcceEEEEEecCHHHHHHHH--------------HhcccccCcHHHHHHHHHHhcCchhhHHH--HHHHHHHHH
Q 043923 271 SKDLGLPGFRVGAIYSNDDMVVAAAT--------------KMSSFGLVSSQTQYLLSALLSDKKFTQNY--ISENKKRLK 334 (469)
Q Consensus 271 SK~~g~~GlRiG~li~~~~~~~~~~~--------------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~l~ 334 (469)
.|.+|.+| +|+++..++.+..... ....+++++.....++.++++- +.+. ++...++.+
T Consensus 193 ~K~~gp~G--~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~---l~~~gG~~~i~~~~~ 267 (361)
T 3m5u_A 193 QKNAGISG--LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDW---LLNQGGLDKVHEKNS 267 (361)
T ss_dssp TTTSSCTT--CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHTTTCHHHHHHHHH
T ss_pred hhccCCCc--cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHH---HHHccCHHHHHHHHH
Confidence 99999666 7778775544322111 1112344555555544444431 1111 466777788
Q ss_pred HHHHHHHHHHHhcC-C-ceecC---CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe
Q 043923 335 QRHRKLVSGLEKAG-I-SCLKS---NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 409 (469)
Q Consensus 335 ~~~~~l~~~L~~~g-~-~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~ 409 (469)
+..+++.+.|++++ + ....+ .+...+.+.+++. .. .+ .++. ..|+++||.+++|... .+.+|+|+
T Consensus 268 ~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~-~~-~~~~-~~L~~~gI~~~~g~~~----~g~iRiS~ 337 (361)
T 3m5u_A 268 QKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KD-LE-PLFV-KEAEEAGMIGLKGHRI----LGGIRASI 337 (361)
T ss_dssp HHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TT-HH-HHHH-HHHHHTTEECCBCCTT----TCSEEEEC
T ss_pred HHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hh-hh-HHHH-HHHHHCCCEEecCCCc----cCeEEEEc
Confidence 88899999999885 5 43321 1223556666631 01 11 2344 4456779999887542 24599999
Q ss_pred ec-CCHHHHHHHHHHHHHHHHhh
Q 043923 410 AN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 410 ~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
.. .++++++++++.|+++.++.
T Consensus 338 ~~~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 338 YNALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 86 49999999999999998764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=154.95 Aligned_cols=336 Identities=12% Similarity=0.069 Sum_probs=191.7
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCC-CCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQ-DYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
.....+||+..+ .+.+. .|.+.+++.+.. .....+. +..-..+|.+.|++.+.
T Consensus 84 ~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~-------------~~~~~~~~~~~~~~~lae~l~~~~p--------- 141 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAM-------------QGGINLTGHNLLEGRLARLICERFP--------- 141 (454)
T ss_dssp TTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHH-------------HTCSCCCSEESSHHHHHHHHHHHST---------
T ss_pred CCCCEEEEccccHHhhcccCCCHHHHHHHHHHH-------------hcCCCccCCcHHHHHHHHHHHHhCC---------
Confidence 344568998655 44443 466666665421 1111111 12233566666665542
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhC-----CCEEEEeeccCCCCcccCHHHHHHHH
Q 043923 110 DTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRT-----GVEIVPIQCTSLNGFQITETAIEEAY 182 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~-----g~~~~~v~~~~~~~~~~d~~~l~~~i 182 (469)
..+.++++++++||...+++... ...++|+....+|.+....+.... ......+|.+ |++.+++.+
T Consensus 142 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-------d~~~l~~~l 214 (454)
T 4ao9_A 142 QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-------DAQTARAQI 214 (454)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-------CHHHHHHHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-------hHHHHHHHH
Confidence 46889999999999999988753 234678888888876432221110 1233444432 778888888
Q ss_pred HHHHhcCCceeEEEEecCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcC
Q 043923 183 QLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261 (469)
Q Consensus 183 ~~~~~~~~~~~~vvl~~P~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 261 (469)
++. ++++.+|++..-....|.+ .+.+-+++|.++|++||+++|.||++.+ ..+..+ ..+... ..
T Consensus 215 ~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~--a~e~~g--------v~ 279 (454)
T 4ao9_A 215 ERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHG--LANKLG--------IR 279 (454)
T ss_dssp HHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTC--HHHHHT--------CC
T ss_pred hhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcccc--chhccC--------CC
Confidence 753 3366666554324556754 5678899999999999999999999974 222211 112211 22
Q ss_pred CeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----c-ccccCcHHHHHHHHHHhc---CchhhHHHHHHHHHH
Q 043923 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----S-SFGLVSSQTQYLLSALLS---DKKFTQNYISENKKR 332 (469)
Q Consensus 262 ~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-----~-~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~ 332 (469)
+.++ +++|.+| .|+.+|.+++. +.+.+.+... . ..+..++++..++.+.|+ +.+. .+.+.++-++
T Consensus 280 PDi~---t~gK~lg-gG~Piga~~~~-~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~-~~~~~~~g~~ 353 (454)
T 4ao9_A 280 SDLT---TLGKYIG-GGMSFGAFGGR-ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEA-AGALAERGEA 353 (454)
T ss_dssp CSEE---EEEGGGG-TTSSCEEEEEC-HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHH-HHHHHHHHHH
T ss_pred CcEE---EeccccC-CCCcceeeeeH-HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccCh-hHHHHHHHHH
Confidence 3333 7889998 89999999994 4454443221 1 112246666666666554 3332 2222222222
Q ss_pred HHHHHHHHHHHHHhcCCceecCCceEEEEEeccccc-----c--cCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeE
Q 043923 333 LKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL-----R--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 405 (469)
Q Consensus 333 l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~-----~--~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~i 405 (469)
++ +.|.+.+++.++......-|.++.+.+.... . ..+......++..++ ++||.+.|.. ++
T Consensus 354 l~---~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~Gv~~~p~~--------~~ 421 (454)
T 4ao9_A 354 LR---ARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL-NEDIYSSPRG--------FV 421 (454)
T ss_dssp HH---HHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH-HTTEECCTTC--------EE
T ss_pred HH---HHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH-HCCEEEcCCC--------CE
Confidence 22 2233333344443222222455556553211 0 011112234555666 5699987642 34
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHhhcc
Q 043923 406 RVCFANMSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 406 Ri~~~~~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++.. +++++|++++++|++++.+...
T Consensus 422 ~~s~~-~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 422 VLSLP-LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp ECCTT-CCHHHHHHHHHHHHHHHHHSGG
T ss_pred EEeCC-CCHHHHHHHHHHHHHHHHhccc
Confidence 44444 5999999999999999998764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-14 Score=141.73 Aligned_cols=302 Identities=16% Similarity=0.082 Sum_probs=181.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCC----CCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHH
Q 043923 111 TSKIVLTAGATSANETLMFCLAEP----GEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLA 185 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~~----gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~ 185 (469)
....++++|+|.++..++.+.+++ ||.|+++..+|..+..++... |++++.++.. .+..+.+|++.++++|++.
T Consensus 134 ~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~-Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ 212 (501)
T 3hl2_A 134 VANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA-GFEPVVIENVLEGDELRTDLKAVEAKVQEL 212 (501)
T ss_dssp CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEECEEEETTEEEECHHHHHHHHHHH
T ss_pred CCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc-CCeEEEEeeeecccccCCCHHHHHHHHHhc
Confidence 356889999997777777776653 499999999999999999888 9999988752 1235789999999999874
Q ss_pred HhcCCceeEEEEecC-CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCccchhhhhhccccccCCcCCe
Q 043923 186 QKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTQVWNR 263 (469)
Q Consensus 186 ~~~~~~~~~vvl~~P-~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (469)
+.+..++++++| +|-.|.+-+ +++|+++|++||+++++|+||+... +...-..+..++ ..-
T Consensus 213 ---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~-----------GrA 275 (501)
T 3hl2_A 213 ---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARV-----------GRI 275 (501)
T ss_dssp ---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHH-----------SCC
T ss_pred ---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhc-----------CCC
Confidence 223334444444 553444444 7779999999999999999997532 111100111111 014
Q ss_pred EEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043923 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSG 343 (469)
Q Consensus 264 ~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 343 (469)
.+++.|..|.+- .-+..|.+...++.+.+.+....+-..+++++..+...++.-+ .+.+++..++..+..++|.+.
T Consensus 276 D~vVqS~HK~ll-vpIGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lG---r~Gy~~ll~e~~ela~~L~~~ 351 (501)
T 3hl2_A 276 DAFVQSLDKNFM-VPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLG---SNGYKKLLKERKEMFSYLSNQ 351 (501)
T ss_dssp CEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecccccce-eecCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 567889999984 4344345556665544444332211123344443444443322 333455556666666777777
Q ss_pred HHhc----CCceecCC-ceEEEEEecccccccCChhHHHHHHHHHHHhCC---eEEe-CCC----------CCCCCC---
Q 043923 344 LEKA----GISCLKSN-AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVK---LNIS-PGS----------SCHCTE--- 401 (469)
Q Consensus 344 L~~~----g~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~G---I~v~-pg~----------~f~~~~--- 401 (469)
|+++ |-++...+ ...-+.+.+........ ....++-..| ...+ -.|. +|. .|+...
T Consensus 352 L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~-~~~t~~gs~L-f~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~ 429 (501)
T 3hl2_A 352 IKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRD-KAVTQLGSML-FTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNY 429 (501)
T ss_dssp HHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTS-CHHHHHHHHH-HHTTCCSCEEECTTCCEEETTEEESSTTTTSSCC
T ss_pred HHHHHHhcChhhcCCCCCceeEEEeccccccccc-ccHHHHHHHH-HhcCCCcceeecCCCceEECCeeecCcccCCCCC
Confidence 7664 55555433 22344555554311111 1222333443 3444 4444 454 455421
Q ss_pred -CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccccc
Q 043923 402 -PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTLH 436 (469)
Q Consensus 402 -~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~~~ 436 (469)
..|+-++-+- ++++|++.++++|.+++.+.+|+.+
T Consensus 430 ~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~ 466 (501)
T 3hl2_A 430 PCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERS 466 (501)
T ss_dssp SSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2366665543 5999999999999999998887544
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-14 Score=143.29 Aligned_cols=356 Identities=13% Similarity=0.069 Sum_probs=193.3
Q ss_pred CCCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCccccccccc-CCCCCCcHHHHHHHHHHHHhHcCCCCC
Q 043923 34 VQNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELAL-FQDYHGLPAFKKALVEFMSEIRGNKVT 108 (469)
Q Consensus 34 ~~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Y~~~~g~~~Lr~aia~~l~~~~~~~~~ 108 (469)
+.....+||+..+ .+.+. .+.+.+++++.... +..... +.+. +...++|+.+.+....
T Consensus 60 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----------~~~~~~~~~~~----~~~~~lae~L~~~~p~--- 122 (456)
T 4atq_A 60 DVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAH----------FTHTCFMVTPY----EGYVAVTEQLNRLTPG--- 122 (456)
T ss_dssp ETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHH----------CSCCTTTTSCC----HHHHHHHHHHHHHSSC---
T ss_pred eCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhh----------ccCcccCccCc----HHHHHHHHHHHHhCCC---
Confidence 3344568998766 55554 46666666552110 111111 1122 2233444444433210
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCC-------------CEEEEeeccC----CC
Q 043923 109 FDTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTG-------------VEIVPIQCTS----LN 169 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~----~~ 169 (469)
-..+.+++++++++|++.+++... .....|+....+|++....+....+ ..+..+|... ..
T Consensus 123 ~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~ 202 (456)
T 4atq_A 123 DHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREEN 202 (456)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSS
T ss_pred CCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCC
Confidence 124678999999999999987742 2346788888888775432211101 1344444321 00
Q ss_pred CcccCHHHHHHHHHHHHh--cCCceeEEEEecCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 170 GFQITETAIEEAYQLAQK--RHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 170 ~~~~d~~~l~~~i~~~~~--~~~~~~~vvl~~P~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
.-..+.+.++..++.... .+.++.+|++.--..-.|. ..+.+-+++|.++|++||+++|.||+..++.-.+.- ..
T Consensus 203 ~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~-~a- 280 (456)
T 4atq_A 203 PEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEW-FA- 280 (456)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SG-
T ss_pred CcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcccc-cc-
Confidence 001134444444443222 1235666555533444665 457789999999999999999999999874222322 11
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcC---chh
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSD---KKF 321 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~---~~~ 321 (469)
.+... ..+.++ +++|.+| .|+.+|.+++.+ .+.+.+.... ..+..++++..++.+.|+. .++
T Consensus 281 ~e~~g--------v~PDiv---t~gK~lg-gg~P~~av~~~~-~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l 347 (456)
T 4atq_A 281 VDHEG--------VVPDII---TMAKGIA-GGLPLSAITGRA-DLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDL 347 (456)
T ss_dssp GGGTT--------CCCSEE---EECGGGG-TTSSCEEEEEEH-HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTH
T ss_pred ccccC--------CCCchh---hhhhccc-CcCCceeeEecH-HHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccH
Confidence 11111 223333 6789998 999999999954 4433332221 1223567777766666543 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC---Cceec--CCceEEEEEeccccccc-CChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKAG---ISCLK--SNAGLFCWVDMRHLLRS-NTFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~g---~~v~~--~~~g~~~~v~~~~~~~~-~~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
.+..++.-+++.+. |.+..+++. .++.. ..-|+++.+++...... ........++..++ ++||.+.++.
T Consensus 348 -~~~~~~~g~~l~~~---L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~-~~Gvl~~~~g 422 (456)
T 4atq_A 348 -NGRARHIEELALGK---LRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACL-KEGVIILTCG 422 (456)
T ss_dssp -HHHHHHHHHHHHHH---HHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECEEEC
T ss_pred -HHHHHHHHHHHHHH---HHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHH-HCCCEEEecC
Confidence 22222222233322 222222221 11111 12256777777532211 11122334555555 6699998653
Q ss_pred CCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 396 SCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 396 ~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+ .+.||+.... ++++++++++++|.++++.
T Consensus 423 ~~----~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 423 TY----GNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp TT----SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 32 4579999876 4999999999999999975
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-13 Score=132.66 Aligned_cols=306 Identities=14% Similarity=0.135 Sum_probs=185.0
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC----cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH------
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTS----KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD------ 151 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~----~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~------ 151 (469)
|+...-.++++....+..++.|+ .+.. ||-.- ++++|...++.+|++|||+|+..+..+.++..-
T Consensus 92 YgGce~vD~iE~la~~rak~lF~----a~~A~w~VNVQP~-SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~ 166 (490)
T 3ou5_A 92 YGGAEVVDEIELLCQRRALEAFD----LDPAQWGVNVQPY-SGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV 166 (490)
T ss_dssp ----CHHHHHHHHHHHHHHHHTT----CCTTTEEEECCCS-SHHHHHHHHHHHHCC-CCCEECBC---------------
T ss_pred cCCChHHHHHHHHHHHHHHHHhC----CCccccCCCCCcC-CHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCC
Confidence 44444455666666666666666 4444 45554 455677788899999999999999877765321
Q ss_pred --HhhhCCC--EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEE
Q 043923 152 --LKWRTGV--EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHL 227 (469)
Q Consensus 152 --~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~i 227 (469)
.... |. ++++++++++ ...+|.+++++...+. ++++|+..-..+|- .++ .+++.++|.+.|.++
T Consensus 167 ~~v~~s-g~~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~r--~id---~~~~reIAd~vGA~L 234 (490)
T 3ou5_A 167 KRISAT-SIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHL 234 (490)
T ss_dssp --------------CBCEETT-TTEECHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEE
T ss_pred cccccc-cccccccccccCCC-CCcccHHHHHHHHhhc-----CCCeEEECCccCcc--ccC---HHHHHHHHhhcccEE
Confidence 1111 33 4555566643 4579999999988876 99987766444432 345 555667777999999
Q ss_pred EEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCH--------------HHHH
Q 043923 228 ISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD--------------MVVA 293 (469)
Q Consensus 228 I~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~--------------~~~~ 293 (469)
++|-+|....-.+.-+++.... -.++..|.+|+| .|-|-|.|++.+. .+.+
T Consensus 235 m~DmAHiaGLVA~g~~psP~~~-------------ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~k 299 (490)
T 3ou5_A 235 LADMAHISGLVAAKVIPSPFKH-------------ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFED 299 (490)
T ss_dssp EEECGGGHHHHHTTSSCCGGGT-------------CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHH
T ss_pred EechhhhhhhhcccccCCcccc-------------ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHH
Confidence 9999995443334444554443 237788999997 8889999998652 2344
Q ss_pred HHHHhccccc-CcH-HHHHHHH-HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecccc-c
Q 043923 294 AATKMSSFGL-VSS-QTQYLLS-ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHL-L 368 (469)
Q Consensus 294 ~~~~~~~~~~-~s~-~~q~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~~~~-~ 368 (469)
.+....-++. .++ +...++. .++.. .+....+...+++.++.+.|.+.|.+.|+++.. ......+++++... .
T Consensus 300 kin~aVFPg~qggp~~h~IAAkAVaf~E--a~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~ 377 (490)
T 3ou5_A 300 RINFAVFPSLQGGPHNHAIAAVAVALKQ--ACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGL 377 (490)
T ss_dssp HHHHHHTTTTCSSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC
T ss_pred HHHhhcCccccccchHHHHHHHHHHHHH--HHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCC
Confidence 4443322222 122 2222211 11211 112234556677778889999999999998863 34456778888642 1
Q ss_pred ccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHH
Q 043923 369 RSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 369 ~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~~~~iRi~~~~-----~~~e~i~~~l~~L~~~l~ 429 (469)
.. ..++.+|++.||.+. |+.. .+..++.|||+... ..+++++++.+-|.+++.
T Consensus 378 tG-------~~ae~~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 378 DG-------ARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CH-------HHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 21 346677889999886 5542 22235679998843 478999999999988775
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-12 Score=131.10 Aligned_cols=321 Identities=16% Similarity=0.096 Sum_probs=183.2
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC----CCEEEEccCCCcChHHHHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEP----GEAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v 163 (469)
...+.+.+..++.+..|. + +....++++|+|.+...++.+.+++ ++.|+++.-+|..+..++... |+.++.+
T Consensus 96 ~~~~e~~~~~~~~~~lGl--p-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~-Gl~p~~v 171 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGV--H-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHHHTC--T-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCC--C-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc-CCeeEEE
Confidence 445667777777776662 1 2345688899884444444444343 899999999999999999887 9998888
Q ss_pred eccC-CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCC-CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 164 QCTS-LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS-NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 164 ~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~-NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
+... +..+.+|++.++++|++.. .+..++|+.+|+ +.+|.+-+ +++|+++|++||+++++|+||+.. +..
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~---~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~-~~~- 243 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELG---PEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQ-SSK- 243 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHC---GGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTT-CHH-
T ss_pred EeeecCccCCcCHHHHHHHHHhcC---CCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchh-hhh-
Confidence 6521 2467899999999998742 124456666674 45666665 666999999999999999999853 110
Q ss_pred Cccchh-hhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCch
Q 043923 242 GFVSIM-EILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 242 ~~~s~~-~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~ 320 (469)
...+. +... ...-..++.|.+|++. .....+++...+....+...........++++......++..+
T Consensus 244 -~~~l~~~a~~--------~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G- 312 (450)
T 3bc8_A 244 -CMHLIQQGAR--------VGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG- 312 (450)
T ss_dssp -HHHHHHHHHH--------HSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH-
T ss_pred -hHhHHHHHhc--------ccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH-
Confidence 01111 1111 0133456789999986 5566777777555444433322111123344444444443221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh----cCCceecCCc-eEEEEEecccccccCChhHHHHHHHHHHHh--CCeEEeC
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEK----AGISCLKSNA-GLFCWVDMRHLLRSNTFEAEMELWKKIVYD--VKLNISP 393 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~----~g~~v~~~~~-g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~--~GI~v~p 393 (469)
.+.+.+..++..+..+++.+.+++ +|+.+...+. +.-..+.+........ .+...+.-.+... .|..+.+
T Consensus 313 --~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~D~tkl~i~~~~~g~sG~~v~~ 389 (450)
T 3bc8_A 313 --CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHD-KAVTQLGSMLFTRQVSGARAVP 389 (450)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSS-CHHHHHHHHHHHTTCCSCEEEC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccccccc-CCCceeEEEecCCCCccceeee
Confidence 222344433344444555555543 3666554321 0011122322111111 2333444433221 1344431
Q ss_pred --------CC---CCCC----CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhccc
Q 043923 394 --------GS---SCHC----TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 434 (469)
Q Consensus 394 --------g~---~f~~----~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~~ 434 (469)
|. .|+. ....++=+.++. .+++++++++++|+++.++.+|+
T Consensus 390 ~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 390 LGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 446 (450)
T ss_dssp SCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 11 1221 124466565543 49999999999999998877663
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-12 Score=132.30 Aligned_cols=348 Identities=15% Similarity=0.172 Sum_probs=189.0
Q ss_pred CCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCC-cHHHHHHHHHHHHhHcCCCCCCCC
Q 043923 37 PTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHG-LPAFKKALVEFMSEIRGNKVTFDT 111 (469)
Q Consensus 37 ~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g-~~~Lr~aia~~l~~~~~~~~~~~~ 111 (469)
...+||+..+ .+.+. .+.+.+++++. +..+..|....+ ..+....+|+.+.+..+ .+.
T Consensus 66 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q-------------~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p----~~~ 128 (473)
T 4e3q_A 66 GRRYLDANSGLWNMVAGFDHKGLIDAAKAQ-------------YERFPGYHAFFGRMSDQTVMLSEKLVEVSP----FDS 128 (473)
T ss_dssp CCEEEETTTTTTTCTTCSCCHHHHHHHHHH-------------HHHCCCCCCCTTEEEHHHHHHHHHHHHHSS----CSS
T ss_pred CCEEEEcccCHHHhhccCCCHHHHHHHHHH-------------HHhcccccccccccCHHHHHHHHHHHhhCC----CCc
Confidence 3457888665 44443 46666666542 122222222211 12344456666655432 345
Q ss_pred CcEEEeCChHHHHHHHHHHhc-------CCC-CEEEEccCCCcChHHHHhhhCCC-----------EEEEeeccCC---C
Q 043923 112 SKIVLTAGATSANETLMFCLA-------EPG-EAFLLPTPYYPGFDRDLKWRTGV-----------EIVPIQCTSL---N 169 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~-------~~g-d~Vl~~~P~y~~~~~~~~~~~g~-----------~~~~v~~~~~---~ 169 (469)
+.|++++++++|++.+++... .++ ..|+...-+|.+....+....|. .++.++.... +
T Consensus 129 ~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~ 208 (473)
T 4e3q_A 129 GRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYG 208 (473)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHS
T ss_pred cEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccc
Confidence 789999999999999998742 233 57888888887753322111111 1222222100 0
Q ss_pred CcccC--------HHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 170 GFQIT--------ETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 170 ~~~~d--------~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
..... .+++++.+.+. ...++.+|++ -| ..-.|.+ .+.+-+++|.++|++||+++|.||+..++.-.
T Consensus 209 ~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~-EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRt 285 (473)
T 4e3q_A 209 EEGETEEQFVARLARELEETIQRE--GADTIAGFFA-EPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT 285 (473)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTT
T ss_pred cccchhhHHHHHHHHHHHHHHHhh--CCCceEEEEe-CCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcc
Confidence 00001 12334444321 1124555444 45 4456654 56788999999999999999999999984222
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHH----hc-----ccccCcHHHH
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK----MS-----SFGLVSSQTQ 309 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~----~~-----~~~~~s~~~q 309 (469)
+..+ ..+... ..+.++ +++|.++ .| +.+|.+++.+ .+.+.+.. .. ..+..++++.
T Consensus 286 G~~f--a~e~~g--------v~PDi~---t~~K~l~-gG~~Pl~av~~~~-~i~~~~~~~~~~~~~~~hg~T~~Gnpla~ 350 (473)
T 4e3q_A 286 GNTW--GCVTYD--------FTPDAI---ISSKNLT-AGFFPMGAVILGP-ELSKRLETAIEAIEEFPHGFTASGHPVGC 350 (473)
T ss_dssp SSSC--HHHHTT--------CCCSEE---EECGGGG-TTSSCCEEEEECH-HHHHHHHHHHHHHSCCCCCCTTTTCHHHH
T ss_pred cchh--HHHhcC--------CCCChH---Hhccccc-CCCCCcccccccH-HHHHHhccccccccccccCCCCCCCcchh
Confidence 3221 111211 223344 5789998 66 9999999954 44443322 11 1122466666
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecccccccC-----ChhHHHHHH
Q 043923 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLRSN-----TFEAEMELW 380 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~v~~~~~g~~~~v~~~~~~~~~-----~~~~~~~l~ 380 (469)
.++.+.|+..+- +...++.++.-++|.+.|+++ .+.-... -|+++-+++....... .......+.
T Consensus 351 Aaala~L~~i~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG-~Gl~~gielv~~~~~~~~~~~~~~~~~~~~ 424 (473)
T 4e3q_A 351 AIALKAIDVVMN-----EGLAENVRRLAPRFEERLKHIAERPNIGEYRG-IGFMWALEAVKDKASKTPFDGNLSVSERIA 424 (473)
T ss_dssp HHHHHHHHHHHH-----SSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred hhhhhhhhhhcc-----ccHHHHHHHHHHHHHHHHHHHhcCCCeeEEee-cceEEEEEEecCccccccccccHHHHHHHH
Confidence 666665542210 112223333444455555543 2211112 2466667653221111 111123445
Q ss_pred HHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
..++ ++||.++|.. +.+|++... ++++++++++++|.+++++...
T Consensus 425 ~~~~-~~Gll~~~~g-------~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 425 NTCT-DLGLICRPLG-------QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp HHHH-HTTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HCCcEEEecC-------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5554 6799998642 468988765 4999999999999999987654
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=149.70 Aligned_cols=216 Identities=13% Similarity=0.117 Sum_probs=126.8
Q ss_pred ceeEEEEecC-CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEc
Q 043923 191 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY 268 (469)
Q Consensus 191 ~~~~vvl~~P-~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~ 268 (469)
++.+|++..- ++..|.. .+.+.+++|.++|++||+++|+||++.++...+..+ . .+... ..+.++
T Consensus 594 ~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~f-a-~e~~g--------v~PDii--- 660 (831)
T 4a0g_A 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-T-TELLG--------CKPDIA--- 660 (831)
T ss_dssp EEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSS-T-HHHHS--------SCCSEE---
T ss_pred cEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCch-h-hHhcC--------CCCcEE---
Confidence 5666555532 5777875 488889999999999999999999999853334332 2 12211 223333
Q ss_pred cCccccCCCc-ceEEEEEecCHHHHHHHHHh-------c-ccccCcHHHHHHHHHHhc---CchhhHHHHHHHHHHHHH-
Q 043923 269 SLSKDLGLPG-FRVGAIYSNDDMVVAAATKM-------S-SFGLVSSQTQYLLSALLS---DKKFTQNYISENKKRLKQ- 335 (469)
Q Consensus 269 S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~-------~-~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~- 335 (469)
+++|.+| .| +++|++++++ .+.+.+... . .....+++++.++.+.|+ +.++ .+.+.+..+++++
T Consensus 661 tlsK~L~-gG~~Plgav~~~~-~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l-~~~~~~~~~~l~~~ 737 (831)
T 4a0g_A 661 CFAKLLT-GGMVPLAVTLATD-AVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET-NHNITSQGKTLREL 737 (831)
T ss_dssp EECGGGG-TTSSCCEEEEECH-HHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT-CTTBCTTSSBBCCC
T ss_pred EEecccc-cCccCcEEEEECH-HHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHH
Confidence 7999998 68 8999999954 454444321 1 112356677766666554 2222 1111111111111
Q ss_pred HHHHHHHHHHhcC-CceecCCceEEEEEecccccccC--ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-
Q 043923 336 RHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSN--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 411 (469)
Q Consensus 336 ~~~~l~~~L~~~g-~~v~~~~~g~~~~v~~~~~~~~~--~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~- 411 (469)
..+.+.+.+.++. +..... .|.++.+.+....... .......++..++ ++||.++|+ .+.+|++...
T Consensus 738 l~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~-------g~~lrl~pp~~ 808 (831)
T 4a0g_A 738 WDEELVQQISSHSAVQRVVV-IGTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPL-------GNVIYLMCGPC 808 (831)
T ss_dssp SCHHHHHHHHHSTTEEEEEE-ETTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCB-------TTEEEEECCTT
T ss_pred HHHHHHHHHhhCCCceeEee-cccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEec-------CCEEEEECCCC
Confidence 0122444555553 222233 3467777775321100 1122345556655 679999975 2579999655
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 043923 412 MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 412 ~~~e~i~~~l~~L~~~l~~~ 431 (469)
++++++++++++|.+++++.
T Consensus 809 ~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 809 TSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp CCHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999998765
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.87 E-value=5.5 Score=36.66 Aligned_cols=103 Identities=12% Similarity=0.112 Sum_probs=66.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCC
Q 043923 111 TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
-.-++||.|++..=..+...|.+.|-.|++..-.-......++.. |.+...+.+|- -|.+++++.+++...+-.
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-GGGAVGIQADS-----ANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTCEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCCeEEEEecC-----CCHHHHHHHHHHHHHHcC
Confidence 344667766666556677778889988888765443344445555 77777777663 266778877776655445
Q ss_pred ceeEEEEecC-CCCCCC--CCCHHHHHHHHHHH
Q 043923 191 KVKGVLVTNP-SNPLGT--TMSRNELNLLVNII 220 (469)
Q Consensus 191 ~~~~vvl~~P-~NPtG~--~~s~e~l~~l~~~~ 220 (469)
++.. +++|. .++.+. -++.++++++.++-
T Consensus 103 ~iDi-LVNNAG~~~~~~~~~~~~e~w~~~~~vN 134 (273)
T 4fgs_A 103 RIDV-LFVNAGGGSMLPLGEVTEEQYDDTFDRN 134 (273)
T ss_dssp CEEE-EEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred CCCE-EEECCCCCCCCChhhccHHHHHHHHHHH
Confidence 7775 44544 333332 35888988888754
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=81.62 E-value=8.5 Score=34.50 Aligned_cols=104 Identities=10% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+...++||.|+...=..+...|.+.|..|++....-.......... +.++..+.+|- -|.+.+++.+++.....
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~ 78 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-GKKARAIAADI-----SDPGSVKALFAEIQALT 78 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-CTTEEECCCCT-----TCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCceEEEEcCC-----CCHHHHHHHHHHHHHHC
Confidence 3445677776665555666778888988887665443333444444 66777777653 25677777776654444
Q ss_pred CceeEEEEecCCCCCCC--CCCHHHHHHHHHH
Q 043923 190 LKVKGVLVTNPSNPLGT--TMSRNELNLLVNI 219 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~--~~s~e~l~~l~~~ 219 (469)
.++..+|.+--..+.+. -.+.++++++.+.
T Consensus 79 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 79 GGIDILVNNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 46775444322333332 3577777777663
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 469 | ||||
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-121 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-107 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 2e-58 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-52 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 7e-50 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 5e-36 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 5e-34 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 6e-30 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-28 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 3e-27 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 5e-27 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 7e-24 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 3e-23 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 6e-23 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 2e-22 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 8e-22 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-19 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 9e-19 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-17 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 2e-15 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 6e-12 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 1e-11 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 3e-10 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 3e-06 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 2e-04 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 6e-04 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 358 bits (918), Expect = e-121
Identities = 352/428 (82%), Positives = 392/428 (91%), Gaps = 1/428 (0%)
Query: 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRN 62
+LS AT N+HGQDSSYFLGWQEYEKNPY EV N GIIQMGLAENQL FDLLESWL +N
Sbjct: 1 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKN 60
Query: 63 PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS 122
P+AA FK++G+SIF ELALFQDYHGLPAFKKA+V+FM+EIRGNKVTFD + +VLTAGATS
Sbjct: 61 PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS 120
Query: 123 ANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAY 182
ANET +FCLA+PGEA L+PTPYYPGFDRDLKWRTGVEIVPI CTS NGFQITETA+EEAY
Sbjct: 121 ANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY 180
Query: 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242
Q A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++ + +K IHLISDEIYSGT FSSP
Sbjct: 181 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS 240
Query: 243 FVSIMEILKDRNC-ENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF 301
F+S+ME+LKDRNC EN++VW RVH+VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF
Sbjct: 241 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF 300
Query: 302 GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 361
GLVSSQTQ+LLSA+LSDKK T+NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLFCW
Sbjct: 301 GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCW 360
Query: 362 VDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 421
VDMRHLLRSNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L+M
Sbjct: 361 VDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAM 420
Query: 422 QRLKAFVD 429
QRLKAFV
Sbjct: 421 QRLKAFVG 428
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 323 bits (829), Expect = e-107
Identities = 239/426 (56%), Positives = 324/426 (76%), Gaps = 2/426 (0%)
Query: 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRN 62
+LS AT HG++S YF GW+ Y+ +P+ ++NP G+IQMGLAENQL DL+E W+ RN
Sbjct: 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 60
Query: 63 PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS 122
P + +G F+ +A FQDYHGLP F+KA+ +FM + RG +V FD ++V+ GAT
Sbjct: 61 PKGS-ICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 119
Query: 123 ANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAY 182
ANET++FCLA+PG+AFL+P+PYYP F+RDL+WRTGV+++PI C S N F+IT A++EAY
Sbjct: 120 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179
Query: 183 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242
+ AQK ++KVKG+++TNPSNPLGTT+ ++ L +++ + NIHL+ DEIY+ TVF +P
Sbjct: 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239
Query: 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG 302
FVSI EIL ++ + VHIVYSLSKD+GLPGFRVG IYS +D VV A KMSSFG
Sbjct: 240 FVSIAEILDEQEMTYCN-KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFG 298
Query: 303 LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 362
LVS+QTQY L+A+LSD+KF N++ E+ RL +RH+ +GLE GI CLK+NAGLFCW+
Sbjct: 299 LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWM 358
Query: 363 DMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 422
D+R LLR +TF++EM LW+ I+ DVKLN+SPGSS C EPGWFRVCFANM + T+ +++
Sbjct: 359 DLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALA 418
Query: 423 RLKAFV 428
R++ FV
Sbjct: 419 RIRRFV 424
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 195 bits (495), Expect = 2e-58
Identities = 72/352 (20%), Positives = 149/352 (42%), Gaps = 29/352 (8%)
Query: 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLP 141
+ G P ++A+ + + R N + + I++T G + LM + EPG+ ++P
Sbjct: 63 YGPAAGEPRLREAIAQKLQ--RDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIP 120
Query: 142 TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
P++ + +K G V + T F+++ I +A K K ++ PS
Sbjct: 121 APFWVSYPEMVKLAEG-TPVILPTTVETQFKVSPEQIRQAIT------PKTKLLVFNTPS 173
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261
NP G + +E+ + + E + ++SDEIY ++ +SI + +
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP-------EAY 226
Query: 262 NRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKK 320
R + +K + G+RVG + +V AA S V + QY ++ +
Sbjct: 227 ERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQY---GAIAAYE 283
Query: 321 FTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMEL 379
+Q+ + E +R R ++ L G+ C K + + + + + T + ++
Sbjct: 284 NSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSI-----AKTGRSSLDF 338
Query: 380 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
+++ ++ PG++ R+ +A DT+K M+RL+ F+ I
Sbjct: 339 CSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLHGI 387
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 179 bits (454), Expect = 2e-52
Identities = 63/346 (18%), Positives = 142/346 (41%), Gaps = 30/346 (8%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP 143
G+P ++AL E ++ + ++T G + A L + +PG+ ++ +P
Sbjct: 66 PPAGIPELREALAEKFRREN--GLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
Y+ + +++ G +V ++ GF + A + K ++V +P+NP
Sbjct: 124 YWVSYPEMVRFAGG-VVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G + L L + E + +L+SDEIY ++ F S + +
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHF-SPGRVAPE----------H 225
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT-KMSSFGLVSSQTQYLLSALLSDKKFT 322
V +K + G+R+G +++ A A+ S + Q+ L++++ +
Sbjct: 226 TLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS 285
Query: 323 QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKK 382
+ ++ ++ ++R L+ GL G+ ++ + + +D + AE L
Sbjct: 286 RAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAG 345
Query: 383 IVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
+ + PG+ G R+ +A SE+ L+ +++R +
Sbjct: 346 VA------VVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVL 382
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 172 bits (437), Expect = 7e-50
Identities = 55/342 (16%), Positives = 139/342 (40%), Gaps = 22/342 (6%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
GL ++A+ E + + + ++I++ GA A + + GE L+PTP +
Sbjct: 63 GLLELREAIAEKLKK-QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFV 121
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ + G + V + + F++ +++ K + +++ +P NP G
Sbjct: 122 SYAPAVIL-AGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTGA 174
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
+++ +L + + + E ++ +ISDE+Y ++ SI +
Sbjct: 175 VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER--------TIT 226
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYI 326
V SK + G+R+G + + ++ +A + + +
Sbjct: 227 VNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAV 286
Query: 327 SENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYD 386
E +K +R + + L + G+ +K + + +R +T + + ++ +
Sbjct: 287 EEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIR-----DTGLTSKKFSELMLKE 341
Query: 387 VKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
++ + PGS+ G+ R+ +A + + L+ +M R++ +
Sbjct: 342 ARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 135 bits (340), Expect = 5e-36
Identities = 82/354 (23%), Positives = 142/354 (40%), Gaps = 34/354 (9%)
Query: 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLP 141
+ D GLP +KA+VE R N V + +TA T A + + L +PG+ L+P
Sbjct: 66 YGDSEGLPELRKAIVEREK--RKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVP 123
Query: 142 TPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPS 201
P YP + L G + V + +Q I + + K + V NP+
Sbjct: 124 GPSYPPY-TGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI------TDRTKAIAVINPN 176
Query: 202 NPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261
NP G + L ++NI E I +ISDEIY + + + +
Sbjct: 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIY----------DLMTYEGEHISPGSLTKD 226
Query: 262 NRVHIVYSLSKDLGLPGFRVGAIYSND-----DMVVAAATKMSSFGL-VSSQTQYLLSAL 315
V ++ LSK G+R+G +Y D V A +++ L ++ Q+ A
Sbjct: 227 VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAG 286
Query: 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSNTFE 374
L+ +Y+ E K+LK+R + L + IS K + + + ++
Sbjct: 287 LTG---PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK----IEVGPWK 339
Query: 375 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
+ E ++++ + GS G FR F + L+ +M R + F+
Sbjct: 340 NDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFM 392
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 130 bits (327), Expect = 5e-34
Identities = 61/408 (14%), Positives = 120/408 (29%), Gaps = 80/408 (19%)
Query: 53 DLLESWLDRNPDA-----AGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKV 107
LE + ++ +A + + R F ++ F +K + E + GN
Sbjct: 67 LFLEEYWKQHKEASAVLVSPWHR-MSYFFNPVSNFIS----FELEKTIKELHEVV-GNAA 120
Query: 108 TFDTSKIVLTAGATSANETLMFCLA--------EPGEAFLLPTPYYPGFDRDLKWRTGVE 159
IV G T L+ L+ P + P+YP F E
Sbjct: 121 A-KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF---------RE 170
Query: 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNI 219
+ + +VT+P+NP G
Sbjct: 171 QTKYFDKKGYVWAGNAANYVNVSNP------EQYIEMVTSPNNPEGLL------------ 212
Query: 220 ITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGF 279
+ IY + P + I + +++++SK G G
Sbjct: 213 --RHAVIKGCKSIYDMVYYW-PHYTPIKY-----------KADEDILLFTMSKFTGHSGS 258
Query: 280 RVGAIYSNDDMVVAAATKMSSFG--LVSSQTQYLLSALLSD--------KKFTQNYISEN 329
R G D+ V + +TQ +L + K ++ +
Sbjct: 259 RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFG 318
Query: 330 KKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLRSNTF------EAEMELWKK 382
K+L++R + + L+++ S + +C R S ++ E + +
Sbjct: 319 FKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQ 378
Query: 383 IVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
+ ++N G + R+ ++D M LK V +
Sbjct: 379 TFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKA 424
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 118 bits (295), Expect = 6e-30
Identities = 69/347 (19%), Positives = 147/347 (42%), Gaps = 34/347 (9%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP 143
D G+ ++ + + + K ++V+T GA A L +PG+ ++ +P
Sbjct: 63 DPRGIYELREGIAKRI--GERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 120
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
+ + + G V S N E ++ K K VL+ +P+NP
Sbjct: 121 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLE-------EVEGLLVGKTKAVLINSPNNP 173
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G R L LV + ++N ++ISDE+Y V++ + ++ ++R
Sbjct: 174 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILD---------VSEGFDR 224
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQ 323
+ + SK + G+RVG + S++ + A + S + + K +
Sbjct: 225 IVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAAL-----KALE 279
Query: 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
S + K+R +V L+K G+ ++ + + +R +++ +++
Sbjct: 280 VDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG--------DDVKFCERL 331
Query: 384 VYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430
+ + K+ + PGS+ +PG+ R+ FA S + L ++ R++ F++S
Sbjct: 332 LEEKKVALVPGSAFL--KPGFVRLSFAT-SIERLTEALDRIEDFLNS 375
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 115 bits (287), Expect = 1e-28
Identities = 47/367 (12%), Positives = 94/367 (25%), Gaps = 52/367 (14%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-------AEPGEAFL 139
GL F+ + V + G T A L
Sbjct: 75 GLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVY 134
Query: 140 LPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTN 199
+ +P + + +I + + + VL
Sbjct: 135 VSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSD---LENAPEFSIFVLHAC 191
Query: 200 PSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQ 259
NP GT + + + +++ + + D Y G + +
Sbjct: 192 AHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELF 251
Query: 260 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--------QYL 311
S SK+ GL RVG + + +S + T +
Sbjct: 252 CAQ------SFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARI 305
Query: 312 LSALLSDKKFT---QNYISENKKRLKQRHRKLVSGLEKAGISC----LKSNAGLFCWVDM 364
++ LSD + + R+ +L + LE + G+F + +
Sbjct: 306 VARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL 365
Query: 365 RHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424
N + E + +K +Y + P R+ ++ L +
Sbjct: 366 ------NPKQVEYLINQKHIY-----LLPSG----------RINMCGLTTKNLDYVATSI 404
Query: 425 KAFVDSI 431
V I
Sbjct: 405 HEAVTKI 411
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (276), Expect = 3e-27
Identities = 60/364 (16%), Positives = 124/364 (34%), Gaps = 30/364 (8%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP 143
G P K L F E+ G ++ +++T G A T L + G+ ++ P
Sbjct: 62 KTFGYPPLTKILASFFGELLGQEIDPL-RNVLVTVGGYGALFTAFQALVDEGDEVIIIEP 120
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK---VKGVLVTNP 200
++ ++ G + ++ + K +++ P
Sbjct: 121 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTP 180
Query: 201 SNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQV 260
+NPLG SR EL L+ ++ + ++ I+DE+Y V+ +SI +
Sbjct: 181 NNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM-------- 232
Query: 261 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLV-----SSQTQYLLSAL 315
W R + S K G++VG + D ++ T + +
Sbjct: 233 WERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFERE 292
Query: 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNT--- 372
+ +Y + + +++ ++ L+ G+ L F D+ R
Sbjct: 293 QLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLP 352
Query: 373 ----FEAEMELWKKIVYDVKLNISPGSSCHCTE-----PGWFRVCFANMSEDTLKLSMQR 423
+ K ++ + L P S + + R CF E TL+ ++
Sbjct: 353 GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEK 411
Query: 424 LKAF 427
L+ +
Sbjct: 412 LRKW 415
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 110 bits (274), Expect = 5e-27
Identities = 53/350 (15%), Positives = 105/350 (30%), Gaps = 51/350 (14%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAF--LLPTPY 144
G+P F + E + + ++ T G T A LA+ + P
Sbjct: 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPS 129
Query: 145 YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL 204
+P G+E+ + A+ + + + NP
Sbjct: 130 WPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLN---EAQAGDVVLFHGCCHNPT 185
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264
G + + L + EK + D Y G + +
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM-------HKEL 238
Query: 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--------VSSQTQYLLSALL 316
+ S SK+ GL RVGA S + +++ +L
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 317 SDKKFT---QNYISENKKRLKQRHRKLVSGLEKAGI----SCLKSNAGLFCWVDMRHLLR 369
S+ + +++ ++R+++ + V+ L++ G S + G+F + +
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL----- 353
Query: 370 SNTFEAEMELWKKI-VYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 418
T E + L ++ VY RV A M+ D +
Sbjct: 354 --TKEQVLRLREEFGVY-----AVASG----------RVNVAGMTPDNMA 386
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 100 bits (250), Expect = 7e-24
Identities = 45/357 (12%), Positives = 108/357 (30%), Gaps = 49/357 (13%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPY 144
GL ++ A+ + + + T G + A + L P + P
Sbjct: 71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPT 130
Query: 145 YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL 204
+ G E+ + + + R +L NP
Sbjct: 131 WENHVAIFAG-AGFEVSTYPWYDEATNGVRFNDLLATLKTLPAR---SIVLLHPCCHNPT 186
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264
G ++ ++ + ++ I+ + + D Y G + +
Sbjct: 187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPA------- 239
Query: 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--------SFGLVSSQTQYLLSALL 316
+ S SK L G RVG + + AA + ++ + +++A+L
Sbjct: 240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVL 299
Query: 317 SDKKFTQNYISENK---KRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLR 369
+D+ ++++E + R+ ++LV L L + G+F + +
Sbjct: 300 NDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL----- 354
Query: 370 SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426
++ + + + R+C A ++ ++ + A
Sbjct: 355 ------SAAQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRVAKAFAA 395
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 99.5 bits (246), Expect = 3e-23
Identities = 66/364 (18%), Positives = 136/364 (37%), Gaps = 27/364 (7%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP 143
G P +AL + S++ + +++++T GA A + + G+ ++ P
Sbjct: 64 RGFGHPRLVQALSKLYSQLVDRTINPM-TEVLVTVGAYEALYATIQGHVDEGDEVIIIEP 122
Query: 144 YYPGFDRDLKWRTGVEI-VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSN 202
++ ++ +K G+ +P++ G + + + +L + K K +++ P N
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182
Query: 203 PLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWN 262
PLG M R EL ++ N+ + N+ +SDE+Y VF + I + W
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGM--------WE 234
Query: 263 RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAA-----TKMSSFGLVSSQTQYLLSALLS 317
R + S K L G+++G Y + ++ + + L
Sbjct: 235 RTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELK 294
Query: 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL------LRSN 371
K + Y + L + + S L + G++ G F D L +
Sbjct: 295 RLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQET 354
Query: 372 TFEAEMELWKKIVYDVKLNISPGSSCHCTEP-----GWFRVCFANMSEDTLKLSMQRLKA 426
+ K + V L P S+ + + R CF ++ L+ + + L+
Sbjct: 355 DARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRK 413
Query: 427 FVDS 430
+ S
Sbjct: 414 WKGS 417
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 98.2 bits (243), Expect = 6e-23
Identities = 63/403 (15%), Positives = 133/403 (33%), Gaps = 34/403 (8%)
Query: 31 YDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPA 90
V+ +I + + + + + + + G
Sbjct: 23 LKLVETS-DVISLAGGL--PAPETFPVETIKKIAVEVLEEHADKALQ----YGTTKGFTP 75
Query: 91 FKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR 150
+ AL +M + ++ I+ AG+ A + + PG+ ++ P Y +
Sbjct: 76 LRLALARWMEKRYDIPMSKVE--IMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQ 133
Query: 151 DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSR 210
K+ E + I E + KR V V G TMS
Sbjct: 134 AFKYYD-PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPA--GVTMSV 190
Query: 211 NELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270
+ L+ + E + ++ D YS +S ++ + RV + +
Sbjct: 191 DRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPP---------IKHFDDYGRVIYLGTF 241
Query: 271 SKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENK 330
SK L PGFR+G + ++ ++ S L ++ ++ + + +I +
Sbjct: 242 SKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKII 300
Query: 331 KRLKQRHRKLVSGLEK---AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDV 387
+ K R ++ LE+ G+ K G+F V + + +
Sbjct: 301 EFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAV-------AK 353
Query: 388 KLNISPGS--SCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
+ PG H + R+ F + E+T++ ++RL +
Sbjct: 354 GVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETI 396
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 96.6 bits (239), Expect = 2e-22
Identities = 54/364 (14%), Positives = 106/364 (29%), Gaps = 51/364 (14%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETL--MFCLAEPGEAFLLPTPY 144
GLP+ + + + + + D V + T A F P + L P
Sbjct: 74 GLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPT 133
Query: 145 YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL 204
+ + + G++ + + A Q A + VL + NP
Sbjct: 134 WANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQKAPEGS---IFVLHSCAHNPT 189
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264
G + + +V+ I KN + D Y G + L + V
Sbjct: 190 GLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST---VSPV 246
Query: 265 HIVYSLSKDLGLPGFRVGAIYSNDDMV------------VAAATKMSSFGLVSSQTQYLL 312
+ S +K+ G+ G RVG + A S + ++
Sbjct: 247 FVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIV 306
Query: 313 SALLSD---KKFTQNYISENKKRLKQRHRKLVSGLEKAGI----SCLKSNAGLFCWVDMR 365
+ LL + + R+ + L L K G + + G+F + +
Sbjct: 307 AKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL- 365
Query: 366 HLLRSNTFEAEMELWKK-IVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 424
T + L + VY + R A +++ ++ + +
Sbjct: 366 ------TPQMVKRLEETHAVY-----LVASG----------RASIAGLNQGNVEYVAKAI 404
Query: 425 KAFV 428
V
Sbjct: 405 DEVV 408
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 94.7 bits (234), Expect = 8e-22
Identities = 50/361 (13%), Positives = 99/361 (27%), Gaps = 51/361 (14%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL---AEPGEAFLLPTP 143
GL F +A E V T + L + LP P
Sbjct: 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKP 131
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
+ + G+++ + + T E ++ +L NP
Sbjct: 132 SWGNH-TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEK---SIILLHACAHNP 187
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G + + L +++ ++N+ D Y G + +
Sbjct: 188 TGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRH------FIEQGID 241
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVA--------AATKMSSFGLVSSQTQYLLSAL 315
V + S +K++GL G R GA + + S +
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLI 301
Query: 316 LSDKKFT---QNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLL 368
L+ + + R+ +LVS L+K G + G+FC+ +
Sbjct: 302 LNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL---- 357
Query: 369 RSNTFEAEMELWKKI-VYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427
E L K+ +Y ++ R+ A ++ + +
Sbjct: 358 ---KPEQVERLTKEFSIY-----MTKDG----------RISVAGVASSNVGYLAHAIHQV 399
Query: 428 V 428
Sbjct: 400 T 400
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 88.3 bits (217), Expect = 1e-19
Identities = 66/347 (19%), Positives = 124/347 (35%), Gaps = 39/347 (11%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP 143
GLPA ++AL E + +V+T+GAT A L+ L PG+ ++ P
Sbjct: 59 PPAGLPALREALAEEF--------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEP 110
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
++ + G + ++ E + L + + + +L+ P NP
Sbjct: 111 FFD-VYLPDAFLAGAKARLVRLD-----LTPEGFRLDLSALEKALTPRTRALLLNTPMNP 164
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G EL + + ++ LISDE+Y + + R
Sbjct: 165 TGLVFGERELEAIARLARAHDLFLISDEVY-----------DELYYGERPRRLREFAPER 213
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQ 323
V S K L G+RVG I + + A + A +
Sbjct: 214 TFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARRE 273
Query: 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
+ ++ ++R L GL G+ F ++ ++A ++
Sbjct: 274 GFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG------WDAF-----RL 322
Query: 384 VYDVKLNISPGSSCHCTEP--GWFRVCFANMSEDTLKLSMQRLKAFV 428
V + ++ + P S+ + +P FR F +E+ L L+++RL V
Sbjct: 323 VEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV 368
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 85.7 bits (210), Expect = 9e-19
Identities = 68/404 (16%), Positives = 150/404 (37%), Gaps = 35/404 (8%)
Query: 36 NPTGIIQMGLAENQLSFDLL--ESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKK 93
+P II++ + + L +LL + + + +A + + G P ++
Sbjct: 28 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG--------YFPTVGSPEARE 79
Query: 94 ALVEFMSEIRG----NKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD 149
A+ + K T +VL +G + + + + G+ L+P P +P ++
Sbjct: 80 AVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYE 139
Query: 150 RDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMS 209
K + ++ + + K K ++VTNPSNP G+ S
Sbjct: 140 TVCKAYGIGMHFYNCRPENDWEADL-------DEIRRLKDDKTKLLIVTNPSNPCGSNFS 192
Query: 210 RNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYS 269
R + +V + E + L SDEIY+G VF + + + + I+
Sbjct: 193 RKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT-----SVADFETTVPRVILGG 247
Query: 270 LSKDLGLPGFRVGAIYSNDDMV-----VAAATKMSSFGLVSSQTQYLLSALLSDKKFTQN 324
+K+L +PG+R+G + D + ++ ++
Sbjct: 248 TAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEH 307
Query: 325 YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIV 384
K + E G++ ++ + L + + ++E ++K++
Sbjct: 308 LDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID-LEKYRDIKTDVEFFEKLL 366
Query: 385 YDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428
+ + + PG+ H PG+ R+ + + +++R+KAF
Sbjct: 367 EEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYREAVERIKAFC 407
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 82.4 bits (202), Expect = 1e-17
Identities = 45/348 (12%), Positives = 107/348 (30%), Gaps = 50/348 (14%)
Query: 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYP 146
G P F+KA+ E + G K + + + +A P + P +P
Sbjct: 70 GEPEFQKAMGELILG-DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWP 128
Query: 147 GFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGT 206
+ + G+ + + + ++ +L NP G
Sbjct: 129 NHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMK---ADLAAAKKGDMVLLHGCCHNPTGA 184
Query: 207 TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266
++ ++ + +I+ + + D Y G + ++ R E I
Sbjct: 185 NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEV-------LI 237
Query: 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT--------QYLLSALLSD 318
S SK+ G+ R G + + + ++ QT ++S +L+
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT 297
Query: 319 KKFT---QNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSN 371
+ + + + + +L L + + G+F +
Sbjct: 298 PELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA------- 350
Query: 372 TFEAEMELWKKI-VYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 418
T E + ++ +Y + S R+ A ++++T+
Sbjct: 351 TPEQVKRIKEEFGIY-----MVGDS----------RINIAGLNDNTIP 383
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 75.5 bits (184), Expect = 2e-15
Identities = 64/344 (18%), Positives = 116/344 (33%), Gaps = 26/344 (7%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP 143
G+ A ++A+ + + G + S I +TAGAT A + L G+ + P
Sbjct: 61 PMTGVQALREAIAQKTERLYGYQPD-ADSDITVTAGATEALYAAITALVRNGDEVICFDP 119
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
Y + + + + A + + V++ P NP
Sbjct: 120 SYDSYAPAIALS--------GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNP 171
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
T + + L I I +ISDE+Y FS G S+ + Q+ R
Sbjct: 172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASV--------LAHPQLRER 223
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQ 323
V S K + G++VG + + + AL +
Sbjct: 224 AVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQ--LALADMLRAEP 281
Query: 324 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKI 383
+ +Q+ LV+ L ++ + L F VD + + ++E + +
Sbjct: 282 EHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV----STLDDVEFCQWL 337
Query: 384 VYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRLK 425
+ + P S R+CFA E TL + +RL+
Sbjct: 338 TQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLR 380
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 64.8 bits (156), Expect = 6e-12
Identities = 59/349 (16%), Positives = 119/349 (34%), Gaps = 22/349 (6%)
Query: 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPY 144
+KK + ++M + T I+ TAG A + +PG+ ++ TP
Sbjct: 65 TGPTEEYKKTVKKWMKDRHQWD--IQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPV 122
Query: 145 YPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL 204
Y F +K + I + I +E+ + K +L +P NP+
Sbjct: 123 YYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK-----DKNNKALLFCSPHNPV 177
Query: 205 GTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264
G ++EL + +I+ + ++ L SDEI+ + I + Q+ ++
Sbjct: 178 GRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI-------DEQLADKT 230
Query: 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQN 324
+ SK + G + I + + TK T A K
Sbjct: 231 ITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGK 290
Query: 325 YISENKKRLKQRHRKLVSGLE--KAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKK 382
++ K + + R + E I W+D R L + +
Sbjct: 291 WLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMD-----HKAMEEF 345
Query: 383 IVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
+++ ++ G G+ R+ A ++ S++RL + +
Sbjct: 346 MIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDL 393
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 63.6 bits (153), Expect = 1e-11
Identities = 46/352 (13%), Positives = 112/352 (31%), Gaps = 26/352 (7%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP 143
G P K+ +++ + + G +T ++ + L+ L E++ +
Sbjct: 78 TTEGDPVLKQQILKLLERMYG--ITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDD 135
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
+ + V + + K +V+N NP
Sbjct: 136 PAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 195
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G T S + LV I + ++ ++ D+ Y + +
Sbjct: 196 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE----------TVDPIFKIGGPE 245
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQ 323
++ + + PG R+G + + + + S L S + L+A ++
Sbjct: 246 RVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLL 305
Query: 324 NYISENKKRLKQRHRKLVS-----GLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEME 378
+ + +++ +++ + G+ +KS GLF W+ + + +
Sbjct: 306 EQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAK 365
Query: 379 LWKKIVYDVKLNISPGSSCHCTE--PGWFRVCFANMSEDTLKLSMQRLKAFV 428
K+ PG + R+ F ++ + ++RL+ V
Sbjct: 366 -------RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVV 410
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 59.5 bits (142), Expect = 3e-10
Identities = 50/346 (14%), Positives = 107/346 (30%), Gaps = 26/346 (7%)
Query: 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF 148
F A+ + S D+ +V L+ +E GE ++ TP Y F
Sbjct: 38 DEFLAAIAHWFSTQHY--TAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAF 95
Query: 149 DRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTM 208
+ ++ + +G+ + ++ P +
Sbjct: 96 YKAIEGNQRTVMPVALEKQADGWFC---------------DMGKLEAVLAKPECKIMLLC 140
Query: 209 SRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY 268
S V E I E + V S + ++ + + ++
Sbjct: 141 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLT 200
Query: 269 SLSKDLGLPGFRVGA-IYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYIS 327
S SK +P I N A + + +SS + L+A ++ + ++
Sbjct: 201 SGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLD 260
Query: 328 ENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVY 385
+ LK + + A ++ + W+D+R L + L K ++
Sbjct: 261 ALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID-----DNALQKALIE 315
Query: 386 DVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431
K+ I PG + G+ R+ L+ + L + ++
Sbjct: 316 QEKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLINAIRAV 360
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 15/167 (8%)
Query: 261 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKK 320
+ + I+ +LSK L G R G +N++++ ++ + L + AL
Sbjct: 201 YPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI 260
Query: 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELW 380
++ + E + + + + + + LW
Sbjct: 261 VAMRERVAQIIAEREYLIAAL--KEIPCVEQVFDSETNYILARFK-----ASSAVFKSLW 313
Query: 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427
+ + N P G R+ E++ ++ + L+A
Sbjct: 314 DQGIILRDQNKQPSL------SGCLRITVGT-REESQRV-IDALRAE 352
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 47/355 (13%), Positives = 105/355 (29%), Gaps = 43/355 (12%)
Query: 84 DYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTP 143
D P + + + +T GA A +M LA+ ++
Sbjct: 41 DEIKTPPIHDFIHNQLPKF------LGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDEN 94
Query: 144 YYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203
+ + + I + T + IT + + +KR +V L+T P
Sbjct: 95 CHYSSYVAAERAG-LNIALVPKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGN 152
Query: 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263
G + + Y + + R + +
Sbjct: 153 YGN-------------LPDVKKIAKVCSEYDVPLLVN------GAYAIGRMPVSLKEIGA 193
Query: 264 VHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG------LVSSQTQYLLSALLS 317
IV S K + G +G + ++ + + L + + L++
Sbjct: 194 DFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMA 252
Query: 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEM 377
+ I + ++ R+ + +EK GI L N D+ +E
Sbjct: 253 SFPHVRERI-KRWDEEVEKARRFAAEMEKLGIKQLGDNPH---NHDLMFFHAEVLYEISK 308
Query: 378 ELWKKIVYDVKLNISPGSSCHCTEPG---WFRVCFANMSEDTLKLSMQRLKAFVD 429
+ + + S H +PG +F++ +S++ + + K ++
Sbjct: 309 KAKGGRFFLYRELKSRKI--HGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 361
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 6e-04
Identities = 46/327 (14%), Positives = 97/327 (29%), Gaps = 48/327 (14%)
Query: 110 DTSKIVLTAGATSAN----ETLMFCLAEPGEAFLLPTPYYPGFDRDLKW--RTGVEIVPI 163
D +IV T+GAT ++ + + G+ + + + R G E+ +
Sbjct: 64 DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYL 123
Query: 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK 223
+ ++E + V + + +N +G ++ + + +
Sbjct: 124 APQ-----RNGIIDLKELEAAMRDD---TILVSIMHVNNEIGV---VQDIAAIGEMCRAR 172
Query: 224 NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGA 283
I S G + I + + +S K G G +GA
Sbjct: 173 GIIYH------VDATQSVGKLPI----------DLSQLKVDLMSFSGHKIYGPKG--IGA 214
Query: 284 IYSNDDMVVAAATKMSSFGLVSSQTQ-----YLLSALLSDKKFTQNYISENKKRLKQRHR 338
+Y V +M G + + + + + ++ +RL+
Sbjct: 215 LYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRN 274
Query: 339 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVK-LNISPGSSC 397
+L +G++ L + ++ +K L +S GS+C
Sbjct: 275 RLWNGIKDIEEVYL-------NGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSAC 327
Query: 398 HCTEPGWFRVCFANMSEDTLKLSMQRL 424
V A D L S R
Sbjct: 328 TSASLEPSYVLRALGLNDELAHSSIRF 354
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.95 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.92 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.92 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.91 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.9 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.9 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.9 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.86 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.86 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.86 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.85 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.84 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.82 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.81 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.78 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.77 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.77 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.77 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.76 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.75 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.75 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.75 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.75 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.74 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.74 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.72 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.72 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.71 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.71 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.7 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.69 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.69 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.69 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.69 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.68 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.67 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.66 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.66 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.66 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.65 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.63 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.63 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.62 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.62 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.61 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.6 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.6 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.59 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.59 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.56 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.5 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.48 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.46 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.27 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.2 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.06 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.94 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.93 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 86.53 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 84.12 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.16 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 81.99 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 81.63 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 80.79 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 80.62 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 80.05 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=1e-68 Score=544.37 Aligned_cols=429 Identities=82% Similarity=1.323 Sum_probs=376.4
Q ss_pred ccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccC
Q 043923 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALF 82 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 82 (469)
|||+||+.+++++++|||.+|+.+..|+|++..||.|+|+|+++||.++.+.+.+++.+.+........+.....+...|
T Consensus 1 ~~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y 80 (431)
T d1m7ya_ 1 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALF 80 (431)
T ss_dssp CCCSTTC-------CHHHHHHHHHHHSBCCSSSCTTSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHC
T ss_pred CcchhhcccCCccCCchhhhhhhhhcCCCCCcCCCCcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999999998776544433333334456789
Q ss_pred CCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEE
Q 043923 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVP 162 (469)
Q Consensus 83 ~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~ 162 (469)
+++.|.++||++||+|++++++.++++++++|++|+|+++++..++.++++|||.|++++|+|..+...+....|+++++
T Consensus 81 ~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~ 160 (431)
T d1m7ya_ 81 QDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVP 160 (431)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEE
T ss_pred cCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceecc
Confidence 99999999999999999999987788899999999999999999999999999999999999999988887655899999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++++.+++|.+|++.++.++++....+.++++++++|||||||.+++.+++++|+++|++|+++||+||+|+++.|++..
T Consensus 161 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~ 240 (431)
T d1m7ya_ 161 IHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS 240 (431)
T ss_dssp EECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSC
T ss_pred ccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCC
Confidence 99998889999999999999888778889999999999999999999999999999999999999999999999999888
Q ss_pred ccchhhhhhccccc-cCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchh
Q 043923 243 FVSIMEILKDRNCE-NTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 243 ~~s~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~ 321 (469)
+.++.++.++.... ..+..+++++++|+||.||++|+|+||++++++.+.........+..+++..|.++.+.+.+..+
T Consensus 241 ~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~ 320 (431)
T d1m7ya_ 241 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKL 320 (431)
T ss_dssp CCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccchh
Confidence 88887765532110 01234689999999999999999999999988877777766666666788888888888888777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 401 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~ 401 (469)
..+++++.++.++++++.+.+.|++.|+++.+|++|+|+|++++.........++.++++++++++||.+.||+.|+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~ 400 (431)
T d1m7ya_ 321 TKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE 400 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCC
Confidence 68889999999999999999999999999999999999999999887777778888999999999999999999999888
Q ss_pred CCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 402 PGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 402 ~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
++|+||+++..++++++++++||+++++++
T Consensus 401 ~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 401 PGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp TTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 999999998667889999999999999875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=1.4e-66 Score=527.99 Aligned_cols=428 Identities=56% Similarity=1.046 Sum_probs=373.9
Q ss_pred ccccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccC
Q 043923 3 LLSGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALF 82 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 82 (469)
.||++++..++++++|||.+|+.+..|+|++..+|.|+|+|+++||.++.+.+.+++.+.+...... .+...+.+...|
T Consensus 1 ~~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y 79 (428)
T d1iaya_ 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANF 79 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHC
T ss_pred CcccccccCCCCCCChhhHhHHHhccCCCCCcCCCCceEEeecccCccchHHHHHHHHhCCchhhhH-hHhhhCHHhccC
Confidence 4899999999999999999999999999999999999999999999999999999999876543222 222334456789
Q ss_pred CCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEE
Q 043923 83 QDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVP 162 (469)
Q Consensus 83 ~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~ 162 (469)
+++.|.++||++||+|++++++.++.+++++|++|+|+++++..++.+++++||.|++++|+|..+...+....|+++++
T Consensus 80 ~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~ 159 (428)
T d1iaya_ 80 QDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred cCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEE
Confidence 99999999999999999999987778899999999999999999999999999999999999999988877555999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++++..++|.+|+++++.+++.....++++++++++|||||||.+++.+++++|+++|++|+++||+||+|+++.|++..
T Consensus 160 v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~ 239 (428)
T d1iaya_ 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC
T ss_pred eecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCccc
Confidence 99998889999999999998877777889999999999999999999999999999999999999999999999998887
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhh
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFT 322 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 322 (469)
+.++.++..... ......+++++++||||.|+++|+|+||++++++.+.+.+.....+..++...|.++++.+.+..+.
T Consensus 240 ~~s~~~~~~~~~-~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~ 318 (428)
T d1iaya_ 240 FVSIAEILDEQE-MTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFV 318 (428)
T ss_dssp CCCHHHHHTSGG-GTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred ccccccccchhh-ccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhhccc
Confidence 777776644210 0012347899999999999999999999999888888877777777768888998888999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 323 QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
++++++.++.++++++.+.+.|+..|+++.+|++|+|+|++++.........++.++++++++++||.+.||+.|+..++
T Consensus 319 ~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~ 398 (428)
T d1iaya_ 319 DNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEP 398 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSS
T ss_pred cccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCC
Confidence 88999999999999999999999999999999999999999998776666677788999999999999999999998889
Q ss_pred CeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 403 GWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 403 ~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+|+||+++..++++++++++||++++..++
T Consensus 399 g~~Ris~a~~~~~~l~~al~Rl~~~l~~~k 428 (428)
T d1iaya_ 399 GWFRVCFANMDDGTVDIALARIRRFVGVEK 428 (428)
T ss_dssp SEEEEECSSSCHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHhhcC
Confidence 999999986688899999999999998653
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-56 Score=449.40 Aligned_cols=360 Identities=18% Similarity=0.350 Sum_probs=308.4
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|+.|++.++ |+.+.+++.+..+ ....+|++..|+++||++||++++++++.. ..++++|++
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~------------~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~-~~~~~~i~~ 91 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNGIE-ADPKTEIMV 91 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHCCC-CCTTTSEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCccCCCCCcCCHHHHHHHHHHHHhhcccc-CCChheeee
Confidence 46899999999886 5667777765311 224579999999999999999998776532 246788999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||.|++++|+|..|...+... |++++.+|++.+++|.+|++++++++++ ++++++
T Consensus 92 t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 164 (388)
T d1gdea_ 92 LLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALI 164 (388)
T ss_dssp ESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred ccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHc-CCEEEEeecccccCCCCCHHHHHHhCcc------CCeEEE
Confidence 999999999999999999999999999999999999888 9999999998888999999999988765 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++..+.++.++.. ..+++|+++||||+||+
T Consensus 165 ~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S~SK~~~~ 236 (388)
T d1gdea_ 165 INSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG--------MFERTITVNGFSKTFAM 236 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT--------CGGGEEEEEESTTTTTC
T ss_pred ECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccC--------CCCeEEEEeCChhhccC
Confidence 9999999999999999999999999999999999999998887776667666533 45789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
||+|+||++++++.+........ .....+.+.|.++..++.+..+ .++++..++.++++++.+.+.|...++++..|+
T Consensus 237 ~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~ 315 (388)
T d1gdea_ 237 TGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK 315 (388)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred ccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhccccccCCC
Confidence 99999999997665544433222 2334678889999999998776 777888889999999999999999999999999
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
+|+|+|+++++.. .+..++++++++++||.+.||+.|+..+++|+||+++ .+++++++++++|++++++++
T Consensus 316 gg~fl~~~l~~~~-----~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~-~~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 316 GAFYIFPRIRDTG-----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA-TAYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp BTTEECCBCGGGT-----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHHhcC
Confidence 9999999997521 2244688889999999999999998877899999998 489999999999999999875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=4.5e-56 Score=444.85 Aligned_cols=355 Identities=20% Similarity=0.377 Sum_probs=303.2
Q ss_pred CCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE
Q 043923 38 TGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL 116 (469)
Q Consensus 38 ~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~ 116 (469)
.++|+|++|++.++ |+.+.+++++..+ .....|++..|.++||+++|+++.+.++ +.+++++|++
T Consensus 30 ~~vi~l~~G~p~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lR~aia~~~~~~~g--~~~~~~~i~i 95 (388)
T d1j32a_ 30 IDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNILV 95 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcc--cCCCCceEEE
Confidence 37899999999886 5667777765311 2345799999999999999999999887 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++.+++++||+|++++|+|..|...+... |.+++.++.+.+++|.+|++++++++++ ++++++
T Consensus 96 t~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-~~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~ 168 (388)
T d1j32a_ 96 TNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHh-cCeEEEEecccccccCCCHHHHHHhCCC------CCeEEE
Confidence 999999999999999999999999999999999988887 9999999998888899999999988764 889999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.++....+. ..+++++++||||+|++
T Consensus 169 ~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~-------~~~~~i~~~S~SK~~~~ 241 (388)
T d1j32a_ 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE-------AYERSVVCSGFAKTYAM 241 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH-------HHHTEEEEEESTTTTTC
T ss_pred ECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcc-------cccceeEecCChhhhhc
Confidence 99999999999999999999999999999999999999988887776776655432 33689999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS 354 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~ 354 (469)
||+|+||+++++..+....+... ....++...|.++...+... .+++++.++.++++++.+.+.|+++ |+++.+|
T Consensus 242 ~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p 318 (388)
T d1j32a_ 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPKP 318 (388)
T ss_dssp TTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC
T ss_pred chhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccch---HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCC
Confidence 99999999996655444333222 23347788888888887654 4568889999999999999999988 8999999
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
++|+|+|++++... .++.++++++++++||.+.||+.|+. ++|+||+++. +++++++++++|+++++..
T Consensus 319 ~gg~~l~~~l~~~~-----~~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~Rls~~~-~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 319 DGAFYMFPSIAKTG-----RSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp CBTTEECCBCGGGT-----CCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHHHh
Confidence 99999999998532 23457888999999999999999974 6899999984 8999999999999999864
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-55 Score=438.04 Aligned_cols=351 Identities=18% Similarity=0.385 Sum_probs=293.5
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.|++.++ |+.+.+++.+... ....+|++..|+++||+++++++.++++ +.+++++|+
T Consensus 30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~------------~~~~~Y~~~~G~~~lR~~ia~~~~~~~~--~~~~~~~i~ 95 (382)
T d1b5pa_ 30 GVDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETI 95 (382)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEE
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCCCCHHHHHHHHhhhhhhcc--cccccccce
Confidence 346999999999886 4667777765311 2356899999999999999999988876 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|++++|+|..|...++.. |.+++.++++++++|.+|++++++++++ +++++
T Consensus 96 it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i 168 (382)
T d1b5pa_ 96 VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKAL 168 (382)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEE
T ss_pred ecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHh-cCeEEEEecccccccCCCHHHHHHhCCC------CCeEE
Confidence 9999999999999999999999999999999999988887 9999999998778899999999987754 88999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
++||||||||.+++.+++++|+++|++||++||+||+|+++.|++... +.... ..+++++++|+||+|+
T Consensus 169 ~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~----------~~~~~i~~~s~SK~~~ 237 (382)
T d1b5pa_ 169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHF-SPGRV----------APEHTLTVNGAAKAFA 237 (382)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC-CGGGT----------CTTTEEEEEESTTTTT
T ss_pred EECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCC-CHHHc----------CCCCEEEEecchhhcc
Confidence 999999999999999999999999999999999999999988876653 33333 3478999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHh-cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
+||+|+||++++++.+....... .....++.+.|.++..++.+......++...++.++++++.+.+.+.+.|+++..|
T Consensus 238 ~~GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p 317 (382)
T d1b5pa_ 238 MTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRP 317 (382)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC
T ss_pred CcHhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecC
Confidence 99999999999666554433222 22234677888888888877665577888889999999999999999999999999
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
++|+|+|++++.... ++..+++.+ .++||.+.||+.|+. ++++||+++. +++++++++++|++++
T Consensus 318 ~gg~~~~~~~~~~~~-----~~~~~~~~l-~e~gV~v~PG~~F~~--~~~iRis~~~-~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 318 SGAFYVLMDTSPIAP-----DEVRAAERL-LEAGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVL 382 (382)
T ss_dssp SBTTEEEEECTTTCS-----SHHHHHHHH-HHTTEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHHGGGGC
T ss_pred CceEEEeEeCCCCCC-----CHHHHHHHH-HHCCEEEEeCcccCC--CCeEEEEEcC-CHHHHHHHHHHHHHhC
Confidence 999999999964321 233444444 567999999999975 6799999984 8999999999998763
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.2e-54 Score=432.42 Aligned_cols=355 Identities=23% Similarity=0.337 Sum_probs=296.8
Q ss_pred CCeeeeecccc---ccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 38 TGIIQMGLAEN---QLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 38 ~~~i~L~~~~n---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
.++|+|+.|++ +++ |+.+.+++.+... .....|++..|+++||++||++++++++ +.+++++
T Consensus 30 ~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~------------~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~ 95 (395)
T d1xi9a_ 30 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPDD 95 (395)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGG
T ss_pred CCeEECCCCCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHhhhhccc--ccccccc
Confidence 46999999986 343 5667777766311 2245699999999999999999999988 4578999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++|+|+++++.+++.+++++||.|++++|+|+.|...+... |.+++.++...+++|.+|++++++.+.+ +++
T Consensus 96 i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~~ 168 (395)
T d1xi9a_ 96 VRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RTK 168 (395)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TEE
T ss_pred cccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhc-CCEEEEEeccccccccchHHHHHHhhcc------ccc
Confidence 999999999999999999999999999999999999999888 9999999988778899999999988754 889
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|+... .+...+. ..+++|+++||||+
T Consensus 169 ~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~---------~~~~vi~~~S~SK~ 238 (395)
T d1xi9a_ 169 AIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH-ISPGSLT---------KDVPVIVMNGLSKV 238 (395)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC-CCHHHHC---------SSSCEEEEEESTTT
T ss_pred EEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc-cchhhcC---------CCCCEEEEeCcchh
Confidence 9999999999999999999999999999999999999999998776543 4444442 34689999999999
Q ss_pred cCCCcceEEEEEecCH-----HHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 274 LGLPGFRVGAIYSNDD-----MVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~-----~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
|++||+|+||++++.. .+.+...... ..+.++.++|.++..++.+. .+++++.++.++++++.+.+.|+++
T Consensus 239 ~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 315 (395)
T d1xi9a_ 239 YFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNEI 315 (395)
T ss_dssp TCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999876432 2222222222 23347788999888888754 3568889999999999999999998
Q ss_pred C-CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 348 G-ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 348 g-~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
+ +.+.+|++|+|+|++++.... .++.+++.++++++||.+.||+.|+..+++|+||+++. +++++++++++|++
T Consensus 316 ~~~~~~~p~gg~~~~~~l~~~~~----~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~-~~e~l~eal~rl~~ 390 (395)
T d1xi9a_ 316 PGISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEK 390 (395)
T ss_dssp TTEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHH
T ss_pred CCceecCCCeeEEEeEECCCCCC----CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC-CHHHHHHHHHHHHH
Confidence 5 578889999999999975322 23457888999999999999999988778999999984 89999999999999
Q ss_pred HHHhh
Q 043923 427 FVDSI 431 (469)
Q Consensus 427 ~l~~~ 431 (469)
+++++
T Consensus 391 ~l~er 395 (395)
T d1xi9a_ 391 FMKER 395 (395)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99864
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.3e-53 Score=428.65 Aligned_cols=380 Identities=20% Similarity=0.309 Sum_probs=300.4
Q ss_pred hhhhhcCCCCCCCCCCCeeeeeccccccCh-----HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHH
Q 043923 23 WQEYEKNPYDEVQNPTGIIQMGLAENQLSF-----DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVE 97 (469)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~L~~~~n~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~ 97 (469)
++... +.+.+..++.++|+|++|+|.+++ +.+.+++++..+ .....+|++..|+++||++||+
T Consensus 16 ir~~~-~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~LReaia~ 83 (412)
T d1bw0a_ 16 IRTVS-DNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID-----------SQECNGYFPTVGSPEAREAVAT 83 (412)
T ss_dssp HHHHH-HTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH-----------TTCSSSCCCTTCCHHHHHHHHH
T ss_pred HHHHH-HhcCCCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhh-----------CCCCCCCCCCcCCHHHHHHHHH
Confidence 44442 334566677889999999986532 334444443211 1335679999999999999999
Q ss_pred HHHhHcCC----CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCccc
Q 043923 98 FMSEIRGN----KVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQI 173 (469)
Q Consensus 98 ~l~~~~~~----~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 173 (469)
|++++++. +..+++++|++|+|+++|+..++++++++||.|++++|+|+.|...+... |++++.+|++++++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~ 162 (412)
T d1bw0a_ 84 WWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEA 162 (412)
T ss_dssp HHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEE
T ss_pred HHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhcc-Cccccccccccccccch
Confidence 99987642 34578999999999999999999999999999999999999999998887 99999999998889999
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhcc
Q 043923 174 TETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 253 (469)
Q Consensus 174 d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~ 253 (469)
+++.+++.+.+ ++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+........
T Consensus 163 ~~~~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~ 236 (412)
T d1bw0a_ 163 DLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF 236 (412)
T ss_dssp CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS
T ss_pred hhHHHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccc
Confidence 99999887654 889999999999999999999999999999999999999999999988765433332222211
Q ss_pred ccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH-----HHHHHHHhcc-cccCcHHHHHHHHHHhcCchhhHHHHH
Q 043923 254 NCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM-----VVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYIS 327 (469)
Q Consensus 254 ~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~-----~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~ 327 (469)
+...++++++|+||.|+++|+|+||+++++.. +......... ...++...|.++...+.+.. ++++.
T Consensus 237 -----~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 309 (412)
T d1bw0a_ 237 -----ETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLD 309 (412)
T ss_dssp -----CCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHH
T ss_pred -----ccccccccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhccccccccc--ccccc
Confidence 13457888999999999999999999986432 2222222222 22345555555555554432 66889
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEE
Q 043923 328 ENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 406 (469)
Q Consensus 328 ~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iR 406 (469)
+.++.++++++.+.+.|.+. |+++..|++|+|+|++++..... ...++.++++++++++||.+.||+.|+. ++|+|
T Consensus 310 ~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~-~~~~~~~~~~~ll~~~gV~v~PG~~Fg~--~g~iR 386 (412)
T d1bw0a_ 310 QIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTR 386 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS-SCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEE
T ss_pred cccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcC-CCCCHHHHHHHHHHhCCEEEEeccccCC--CCeEE
Confidence 99999999999999999776 89999999999999998743221 2245668999999999999999999974 78999
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 407 VCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 407 i~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
||++. ++++++++++||+++++++.
T Consensus 387 is~~~-~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 387 LTTTR-PVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp EECCS-CHHHHHHHHHHHHHHHHHHB
T ss_pred EEEcC-CHHHHHHHHHHHHHHHHhcC
Confidence 99984 89999999999999998763
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=3.1e-52 Score=421.06 Aligned_cols=364 Identities=18% Similarity=0.289 Sum_probs=297.5
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcEEE
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKIVL 116 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~ 116 (469)
++|||+.|.+.++ |+.+.+++.+..... -.....|++..|+++||++||++++++++ +.+++ ++|++
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~---------~~~~~~Y~~~~G~~~lReaiA~~~~~~~g--~~~~p~~~I~i 95 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSP---------DPLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVLV 95 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCS---------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCC---------CccCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCccceEEE
Confidence 6799999998775 466777776532110 02345799999999999999999999887 34564 89999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCC--------CcccCHHHHHHHHHHHHhc
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLN--------GFQITETAIEEAYQLAQKR 188 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~l~~~i~~~~~~ 188 (469)
|+|+++|+..++++++++||.|++++|+|+.|...+... |.+++.++++.++ .|..+++.+......
T Consensus 96 t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 170 (418)
T d2r5ea1 96 TVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE---- 170 (418)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCT----
T ss_pred cCCCchhhhhhhhhccccccceeccccccchhhHHHHHc-CCeEEEEEecccccccchhhhhhhhhHHHHhhhhhc----
Confidence 999999999999999999999999999999999999888 9999999986543 356777777766443
Q ss_pred CCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEc
Q 043923 189 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVY 268 (469)
Q Consensus 189 ~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~ 268 (469)
++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++....++..+.. ..+++++++
T Consensus 171 --~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~ 240 (418)
T d2r5ea1 171 --KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG--------MWERTITIG 240 (418)
T ss_dssp --TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------TGGGEEEEE
T ss_pred --cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCcccccccccc--------ccceeeeee
Confidence 8899999999999999999999999999999999999999999998887766666665533 557999999
Q ss_pred cCccccCCCcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCc----hhhHHHHHHHHHHHHHHHHHHHHH
Q 043923 269 SLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDK----KFTQNYISENKKRLKQRHRKLVSG 343 (469)
Q Consensus 269 S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~l~~~~~~l~~~ 343 (469)
|+||.+++||+|+||+++++..+....+... ....++++.|.++..++... ...++++++.++.++.+++.+.+.
T Consensus 241 S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d2r5ea1 241 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhh
Confidence 9999999999999999997665544333232 23446778887777665432 122567889999999999999999
Q ss_pred HHhcCCceecCCceEEEEEeccccccc------CChhHHHHHHHHHHHhCCeEEeCCCCCCCC-----CCCeEEEEeecC
Q 043923 344 LEKAGISCLKSNAGLFCWVDMRHLLRS------NTFEAEMELWKKIVYDVKLNISPGSSCHCT-----EPGWFRVCFANM 412 (469)
Q Consensus 344 L~~~g~~v~~~~~g~~~~v~~~~~~~~------~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~-----~~~~iRi~~~~~ 412 (469)
|++.|+++..|+||+|+|++++..... ....++.+++.++++++||.+.||+.|+.. +++|+|||++.
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~- 399 (418)
T d2r5ea1 321 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK- 399 (418)
T ss_dssp HHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCS-
T ss_pred HhhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecC-
Confidence 999999999999999999999754221 122466789999999999999999999764 25799999975
Q ss_pred CHHHHHHHHHHHHHHHH
Q 043923 413 SEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 413 ~~e~i~~~l~~L~~~l~ 429 (469)
+++++++++++|++++.
T Consensus 400 ~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 400 KDENLQKAAEILRKWKG 416 (418)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 89999999999999874
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=4.4e-52 Score=416.72 Aligned_cols=359 Identities=17% Similarity=0.229 Sum_probs=290.3
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|++|++.+| |+.+.+++.+..+ ....+|+ .|.++||++||+|+++++| +.+++++|+
T Consensus 30 g~~vi~l~~g~pdf~~p~~v~~al~~~~~------------~~~~~Y~--~g~~~Lr~aia~~~~~~~g--~~~~~~~I~ 93 (394)
T d1c7na_ 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYT--GPTEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (394)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSB--CCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------CCCcCCC--CCCHHHHHHHHHHHHHhcC--CCCCCcceE
Confidence 347999999999986 5677777766311 2244675 4679999999999999987 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQKRHLKVKG 194 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 194 (469)
+|+|+++++..+++++++|||.|+++.|.|.++...+... |...+.++.. .+..|.+|.+.++..+. ++++++
T Consensus 94 vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~ 167 (394)
T d1c7na_ 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSK-----DKNNKA 167 (394)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHT-----CTTEEE
T ss_pred eeccchhhhhhhhccccccccccccccCcccchhhHHhhh-hhcccccccccccccccchhhhhhhhhc-----cccceE
Confidence 9999999999999999999999999999999999888887 9999988864 34567788888877654 237999
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
+++||||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.+....... ..++++++.|+||.|
T Consensus 168 i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~s~SK~~ 240 (394)
T d1c7na_ 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ-------LADKTITFTAPSKTF 240 (394)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH-------HHTTEEEEECSHHHH
T ss_pred EEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcc-------cccceeecccccccc
Confidence 9999999999999999999999999999999999999999998887655554443331 347899999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhccccc-C-cHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCc
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMSSFGL-V-SSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GIS 350 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~~~~~-~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~ 350 (469)
|++|+|+||+++++..+.+.+.+...... . ....+.++.... .... .++.++.++.++++++.+.+.++.. ++.
T Consensus 241 ~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (394)
T d1c7na_ 241 NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEIC-YKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIK 318 (394)
T ss_dssp TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHH-HHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSB
T ss_pred cccccccccccccChhhhhhhhhhhhhccccccccccchhhhhh-hcch-hhhhcccccccchhhhhhhhhhhcccccee
Confidence 99999999999988888776655543322 2 222222222222 2222 6678888888999999998888865 677
Q ss_pred eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 351 CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+..|+||+|+|++++... .++.+++++|++++||.+.||+.|+..+++|+|||++ .+++++++++++|++++++
T Consensus 319 ~~~p~g~~~~~~~~~~~~-----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~i~eal~rl~~~l~~ 392 (394)
T d1c7na_ 319 APLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERLNKALKD 392 (394)
T ss_dssp CCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCceeEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHHh
Confidence 788999999999998531 2345788999999999999999998777899999998 4899999999999999998
Q ss_pred hc
Q 043923 431 IT 432 (469)
Q Consensus 431 ~~ 432 (469)
++
T Consensus 393 Lk 394 (394)
T d1c7na_ 393 LK 394 (394)
T ss_dssp HC
T ss_pred cC
Confidence 75
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-51 Score=416.10 Aligned_cols=364 Identities=18% Similarity=0.340 Sum_probs=297.5
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCC-CcE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDT-SKI 114 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~-~~i 114 (469)
..++|+|+.|++.++ |+.+.+++++.... -....+|++..|+++||++||+++++++| +.+++ ++|
T Consensus 24 ~~dvI~l~~G~p~~~~p~~v~~a~~~al~~----------~~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I 91 (418)
T d1w7la_ 24 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSG----------DFMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNV 91 (418)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTSS----------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHE
T ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHhC----------CCcccCCCCCcCCHHHHHHHHHHHHHHhC--CCCCcccce
Confidence 337899999998876 56777777663211 02345799999999999999999998887 34554 689
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC----------CCCcccCHHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS----------LNGFQITETAIEEAYQL 184 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~d~~~l~~~i~~ 184 (469)
++|+|+++++..++++++++||.|++++|+|+.|...+... |.+++.++..+ +.+|.+|.+++.....
T Consensus 92 ~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~- 169 (418)
T d1w7la_ 92 LVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT- 169 (418)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC-
T ss_pred eeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHc-CCEeeccccccccccccccccccCcccchhhhhcccc-
Confidence 99999999999999999999999999999999999999887 99999888653 2356677666665443
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
+++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++.++.. ..+++
T Consensus 170 -----~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~--------~~~~~ 236 (418)
T d1w7la_ 170 -----SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG--------MWERT 236 (418)
T ss_dssp -----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------TGGGE
T ss_pred -----ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccc--------ccccc
Confidence 38899999999999999999999999999999999999999999999888877677766643 45789
Q ss_pred EEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchh----hHHHHHHHHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKF----TQNYISENKKRLKQRHR 338 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~ 338 (469)
+++.|+||.+++||+|+||+++++..+ ..+.+... ..+++++.|.++..++.+... ..+++...++.++++++
T Consensus 237 i~~~S~SK~~~~pG~RvG~~v~~~~~~-~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 315 (418)
T d1w7la_ 237 LTIGSAGKTFSATGWKVGWVLGPDHIM-KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRD 315 (418)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCHHHH-HHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHH
T ss_pred ceecccCccccCCCCcccccccchhhh-hhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhh
Confidence 999999999999999999999966544 44433332 234778888888777764321 24567888999999999
Q ss_pred HHHHHHHhcCCceecCCceEEEEEeccccccc-------CChhHHHHHHHHHHHhCCeEEeCCCCCCC-----CCCCeEE
Q 043923 339 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS-------NTFEAEMELWKKIVYDVKLNISPGSSCHC-----TEPGWFR 406 (469)
Q Consensus 339 ~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~-------~~~~~~~~l~~~ll~~~GI~v~pg~~f~~-----~~~~~iR 406 (469)
.+.+.|++.|+++.+|+||+|+|++++..... .....+.+++.+||+++||.|.||+.|+. ..++|||
T Consensus 316 ~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iR 395 (418)
T d1w7la_ 316 HMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIR 395 (418)
T ss_dssp HHHHHHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEE
T ss_pred hhhhhhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEE
Confidence 99999999999999999999999999753221 12234668899999999999999999974 2468999
Q ss_pred EEeecCCHHHHHHHHHHHHHHHH
Q 043923 407 VCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 407 i~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
||++. +++++++++++|+++..
T Consensus 396 is~~~-~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 396 FCFVK-DEATLQAMDEKLRKWKV 417 (418)
T ss_dssp EECCC-CHHHHHHHHHHHHHHHC
T ss_pred EEEcC-CHHHHHHHHHHHHHHhc
Confidence 99985 89999999999998764
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.8e-51 Score=407.28 Aligned_cols=346 Identities=21% Similarity=0.378 Sum_probs=287.6
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|++|++.++ |+.+.+++.+... +....|++..|+++||+++++++++.++ ..+++++|+
T Consensus 27 G~~vI~l~~G~p~~~~p~~i~~~~~~~~~------------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~~i~ 92 (375)
T d1o4sa_ 27 GEDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVV 92 (375)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEE
T ss_pred CCCeEECCCcCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCcCCHHHHHHHHhhhhhccc--ccccccccc
Confidence 346999999999885 4666666665311 2345799999999999999999998877 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++|+..++.+|+++||.|++++|+|+.|...+... |...+.++.+.++++.++.+.++....+ +++++
T Consensus 93 ~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 165 (375)
T d1o4sa_ 93 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAV 165 (375)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEE
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhcc-ccccccccccccccccchhHHHHHhhcc------CccEE
Confidence 9999999999999999999999999999999999888877 9999999998888899998888776543 88999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.++... ........ ..+++++++|+||.||
T Consensus 166 ~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~--------~~~~~i~~~S~SK~~~ 236 (375)
T d1o4sa_ 166 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEF-TSILDVSE--------GFDRIVYINGFSKSHS 236 (375)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCC-CCHHHHCS--------SSTTEEEEEESTTTTT
T ss_pred EEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccc-cccccccC--------CCCCEEEEeechhhcc
Confidence 99999999999999999999999999999999999999987666544 34344432 5689999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcc-cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 354 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~ 354 (469)
+||+|+||+++++..+......... ....+...+......+... ....++.++++++.+.+.|++.|+++.+|
T Consensus 237 l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~l~~~g~~~~~p 310 (375)
T d1o4sa_ 237 MTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEP 310 (375)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCccccccccccccchhhhhhhhccccccccccchhhhhhhcccc------hhhhHHHHHHHHHHHHHHHHhcCceEecC
Confidence 9999999999976655443322222 2235566666666665543 34556778889999999999999999999
Q ss_pred CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 355 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 355 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
++|+|+|++++. ++.+++.++++++||.++||+.|+. ++|+||+++. +++++++++++|+++++
T Consensus 311 ~gg~f~~~~~~~--------~~~~~~~~ll~~~gV~v~pG~~F~~--~g~iRis~~~-~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 311 EGAFYLFFKVRG--------DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLN 374 (375)
T ss_dssp SBSSEEEEECSS--------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEECCC--------CHHHHHHHHHHhCCEEEEEccccCC--CCeEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 999999999984 2446888999889999999999974 6799999984 89999999999999986
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.7e-51 Score=402.23 Aligned_cols=353 Identities=15% Similarity=0.239 Sum_probs=288.0
Q ss_pred eeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 40 IIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 40 ~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
+|+|+++++.+| |+.+.+++.+... .....|++..| +++|+++|+++.++++ +++++++|++|+
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~------------~~~~~Y~~~~g-~~lr~~ia~~~~~~~g--~~~~~~~i~it~ 65 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRWKN-DEFLAAIAHWFSTQHY--TAIDSQTVVYGP 65 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCSCC-HHHHHHHHHHHHHHSC--CCCCGGGEEEES
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCC-HHHHHHHHHHHHHHhC--CCCCcceEEEeC
Confidence 589999999997 4778888776421 22457999888 7899999999999887 457899999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC-CCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS-LNGFQITETAIEEAYQLAQKRHLKVKGVLV 197 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl 197 (469)
|+++++..++.+++++||+|++++|+|..|...+... |.+++.++.+. .++|.+|++.++..+.+ ++++++++
T Consensus 66 G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~~~~~~~~-----~~~~~i~l 139 (361)
T d1d2fa_ 66 SVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKIMLL 139 (361)
T ss_dssp CHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEEEEE
T ss_pred CHHHHHHHHhhhccccccccccccccccchhHHHHhh-cceEEeecccccccccccccccchhhccc-----CCceeEEe
Confidence 9999999999999999999999999999999888877 99999998763 46678999999988753 38999999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCC
Q 043923 198 TNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLP 277 (469)
Q Consensus 198 ~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 277 (469)
+|||||||.++|.+++++|+++|+++|++||+||+|.++.|++....++... ..++++++.|+||.++++
T Consensus 140 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~----------~~~~~v~~~s~SK~~~~~ 209 (361)
T d1d2fa_ 140 CSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV----------ARGDWALLTSGSKSFNIP 209 (361)
T ss_dssp ESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT----------CCSSEEEEECSHHHHTCG
T ss_pred cccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccc----------cccccccccccccccccc
Confidence 9999999999999999999999999999999999999988877665555544 447899999999999999
Q ss_pred cceEEEEEecCHHHHH-HHHHhcccc---cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCce
Q 043923 278 GFRVGAIYSNDDMVVA-AATKMSSFG---LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA--GISC 351 (469)
Q Consensus 278 GlRiG~li~~~~~~~~-~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g~~v 351 (469)
|+|+||++++...... ......... .++...+.++...+.. ...+.++.+..++++++.+.+.+.+. ++.+
T Consensus 210 g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 286 (361)
T d1d2fa_ 210 ALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNW 286 (361)
T ss_dssp GGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhc---cchhhhcccccchhhHHHHHHHhhhhcccccc
Confidence 9999999886655433 333333222 2333333333333322 25567788888888888888877765 6788
Q ss_pred ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 352 LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+|++|+|+|++++... .++.+++.+|++++||.|.||+.|+..+++|+|||++ .+++++++++++|++++++.
T Consensus 287 ~~p~gg~~~~~~l~~~~-----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~-~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 287 QIPQSTYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp CCCSBCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred cccCceeEEEEEccCCC-----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc-CCHHHHHHHHHHHHHHHHhc
Confidence 89999999999986321 2345788999999999999999998877889999998 48999999999999999986
Q ss_pred c
Q 043923 432 T 432 (469)
Q Consensus 432 ~ 432 (469)
|
T Consensus 361 r 361 (361)
T d1d2fa_ 361 R 361 (361)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-50 Score=399.23 Aligned_cols=350 Identities=20% Similarity=0.281 Sum_probs=291.8
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC-cEEE
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS-KIVL 116 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~-~i~~ 116 (469)
++|||+.|.+.++ |+.+.+++.+... .....|++..|+++||++||+++++++| +.++++ +|++
T Consensus 27 ~~i~l~~G~Pd~~~p~~i~~a~~~~~~------------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I~v 92 (382)
T d1u08a_ 27 QAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITV 92 (382)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCcCCHHHHHHHHHHHHHHhC--CCCCCCceEEe
Confidence 7899999999875 4667777765311 2345899999999999999999999887 445666 5999
Q ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 117 TAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 117 t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
|+|+++++..++++++++||.|++++|+|..+...+... |..++.++.+. .++.+|+++++..+.+ ++++++
T Consensus 93 t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~i~ 164 (382)
T d1u08a_ 93 TAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQP-PHFRVDWQEFAALLSE------RTRLVI 164 (382)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCT-TTCCCCHHHHHHHCCT------TEEEEE
T ss_pred ccchHHHHHHHHhhcccccceEEEecccccchhhhhhhc-cccceeccccc-ccccCCHHHHhhhhcc------CccEEE
Confidence 999999999999999999999999999999999888887 99888888764 5678899999887654 899999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.+++.+++++|+++|.+++++++.||+|..+.+.+....+...... ..+++|++.|+||.+++
T Consensus 165 l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~s~SK~~~~ 236 (382)
T d1u08a_ 165 LNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ--------LRERAVAVSSFGKTYHM 236 (382)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH--------HHTTEEEEEEHHHHTTC
T ss_pred ECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccccccccccc--------ccCcEEEEeeccccccC
Confidence 9999999999999999999999999999999999999987666544444333322 44789999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHh-cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
||+|+||+++++..+....... ....+++.+.|.++..++... .+++...++.++++++.+.+.+...|+++.+|+
T Consensus 237 pG~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~ 313 (382)
T d1u08a_ 237 TGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPCE 313 (382)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCC
T ss_pred CcccchhhhccchhHHHHHhhhcccccccccccccccccccccc---hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCC
Confidence 9999999999666554433222 223457889999999988754 356888899999999999999988899999999
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLKA 426 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l~~L~~ 426 (469)
||+|+|++++.... .++.+++.++++++||.+.||+.|+.. +.+|+|||++. ++++++++++||++
T Consensus 314 gg~~~~~~~~~~~~----~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 314 GTYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 381 (382)
T ss_dssp BSSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred ceEEEEEecCCCCC----CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHhC
Confidence 99999999985322 235578999999999999999999753 45799999985 89999999999976
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-49 Score=401.25 Aligned_cols=364 Identities=17% Similarity=0.260 Sum_probs=291.1
Q ss_pred CCCeeeeeccccc---cChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 37 PTGIIQMGLAENQ---LSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 37 ~~~~i~L~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
.+++|+|+.|.+. +|.+.+.+++++.... .......|++..|+++||++||+++++++|.. .+++++
T Consensus 37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~---------~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~-~~~~~~ 106 (420)
T d1vp4a_ 37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEK---------EYHYTLQYSTTEGDPVLKQQILKLLERMYGIT-GLDEDN 106 (420)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHH---------SHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCC-SCCGGG
T ss_pred CCCcEecCCcCCCCccCCHHHHHHHHHHHHhh---------CCccccCCCCCcCCHHHHHHHHHHHHHHhCCC-CCCHHH
Confidence 4589999999754 3455555555542110 01345689999999999999999999988732 268999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhc---CC
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKR---HL 190 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~---~~ 190 (469)
|++|+|+++++.+++.+++++||.|++++|+|..|...++.. |++++.+|.++. .++++.++..+.+.... ..
T Consensus 107 I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~ 182 (420)
T d1vp4a_ 107 LIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQ 182 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGG
T ss_pred eEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHH-hhhccccccccc---ccccchhhhhhhhhHHHhhccc
Confidence 999999999999999999999999999999999999888887 999999998753 36888888776554322 12
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccC
Q 043923 191 KVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSL 270 (469)
Q Consensus 191 ~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~ 270 (469)
...+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+..... ..+++++++|+
T Consensus 183 ~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~---------~~~~~i~~~s~ 253 (420)
T d1vp4a_ 183 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG---------GPERVVLLNTF 253 (420)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH---------CTTTEEEEEES
T ss_pred cceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc---------cccceeEEecc
Confidence 344556889999999999999999999999999999999999999888876655544432 45789999999
Q ss_pred ccccCCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 043923 271 SKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA- 347 (469)
Q Consensus 271 SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 347 (469)
||.++ +|+|+||++++++.+ +.+.+.... ..++.+.|.+++.++.+..+ .++++..++.++++++.+.+.|++.
T Consensus 254 sk~~~-~G~RiG~~~~~~~~i-~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~ 330 (420)
T d1vp4a_ 254 SKVLA-PGLRIGMVAGSKEFI-RKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYF 330 (420)
T ss_dssp TTTTC-GGGCEEEEECCHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccc-cccccccccccchhh-hhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHHHhhhhcccchhhhhhhh
Confidence 99885 999999999965544 444333222 34678888888888887766 7778888889999999998888875
Q ss_pred ----CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC--CCeEEEEeecCCHHHHHHHH
Q 043923 348 ----GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--PGWFRVCFANMSEDTLKLSM 421 (469)
Q Consensus 348 ----g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~--~~~iRi~~~~~~~e~i~~~l 421 (469)
|+++.+|+||+|+|+++++..+.. ++++ +++++||.+.||+.|+..+ .+++|||++..+++++++++
T Consensus 331 ~~~~g~~~~~p~gg~f~~~~~~~~~d~~------~~~~-~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~ 403 (420)
T d1vp4a_ 331 SDIPGVKWVKSEGGLFIWLTLPEGFDTW------EMFE-YAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGI 403 (420)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTT------TTHH-HHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHH
T ss_pred ccCCCcEEecCCceEEEEEECCCCCCHH------HHHH-HHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHH
Confidence 788999999999999998754433 2444 4457799999999998643 57999999866899999999
Q ss_pred HHHHHHHHhhcc
Q 043923 422 QRLKAFVDSITT 433 (469)
Q Consensus 422 ~~L~~~l~~~~~ 433 (469)
++|+++++++.+
T Consensus 404 ~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 404 KRLREVVLEYGK 415 (420)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH
Confidence 999999998887
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.1e-50 Score=399.21 Aligned_cols=351 Identities=20% Similarity=0.338 Sum_probs=288.7
Q ss_pred CCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEE
Q 043923 37 PTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIV 115 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~ 115 (469)
..++|+|+.|+|.++ |+.+.+++.+.. .+...|++..|.++||+++|++++++++ +.+++++|+
T Consensus 27 g~~vi~l~~G~p~~~~p~~~~~al~~~~-------------~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~ 91 (389)
T d2gb3a1 27 GVRIHHLNIGQPDLKTPEVFFERIYENK-------------PEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVL 91 (389)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHHHHTC-------------CSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHhcC-------------CCCCCCCCCcCCHHHHHHHHHHHHHhcC--CCcccceEE
Confidence 457899999999886 566777777642 3456899999999999999999998877 557899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 043923 116 LTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGV 195 (469)
Q Consensus 116 ~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 195 (469)
+|+|+++++..++.+++++||.|++++|+|+.+...+... |+.++.++.+.++.+ .+.+.+...+. ++++++
T Consensus 92 it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~ 163 (389)
T d2gb3a1 92 VTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEEGF-AIPQNLESFIN------ERTKGI 163 (389)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGGTS-CCCTTGGGGCC------TTEEEE
T ss_pred ecccccccccccccccccCCCeEEEeCCCCcccccccccc-Ccccccccccccccc-chhhhhhhhcc------cCccEE
Confidence 9999999999999999999999999999999999998888 999999998754433 33344443333 388999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 196 LVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 196 vl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. .+.... ..++++++.|+||.++
T Consensus 164 ~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~-~~~~~~----------~~~~~~v~~s~sK~~~ 232 (389)
T d2gb3a1 164 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEF-ASALSI----------ESDKVVVIDSVSKKFS 232 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC-CCGGGS----------CCTTEEEEEESTTTTT
T ss_pred EeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccc-cccccc----------cccccccccccccccc
Confidence 99999999999999999999999999999999999999998777654 333322 4478899999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI-SCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~-~v~~ 353 (469)
+||+|+||++++++.+........ ....++.+.|.++..++... +++++..++.++++++.+.+.|+++|+ .+..
T Consensus 233 ~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 309 (389)
T d2gb3a1 233 ACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKRFTK 309 (389)
T ss_dssp CGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCC
T ss_pred CcccceeeeeccchhHHHHHhhhhhcccccccccccccccccccc---chhcccccccccccchhhhhhhhhhccccccC
Confidence 999999999998877766554443 33445667777777777654 567888999999999999999999975 5678
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHh-----CCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYD-----VKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~-----~GI~v~pg~~f~~~---~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
|.+|+|+|++++.. +..+++.+++++ .||.+.||+.|+.. +++|+||+++ .+++++++++++|+
T Consensus 310 p~~g~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~-~~~~~l~~a~~~L~ 381 (389)
T d2gb3a1 310 PSGAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLM 381 (389)
T ss_dssp CSBSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHH
T ss_pred CCceEEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc-CCHHHHHHHHHHHH
Confidence 89999999999742 234677888766 47899999988753 3679999998 59999999999999
Q ss_pred HHHHhhc
Q 043923 426 AFVDSIT 432 (469)
Q Consensus 426 ~~l~~~~ 432 (469)
+++++..
T Consensus 382 ~~lk~f~ 388 (389)
T d2gb3a1 382 EGLKMFC 388 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998763
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=1.3e-48 Score=392.55 Aligned_cols=363 Identities=17% Similarity=0.244 Sum_probs=288.7
Q ss_pred CCeeeeecccccc---ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcE
Q 043923 38 TGIIQMGLAENQL---SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKI 114 (469)
Q Consensus 38 ~~~i~L~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i 114 (469)
+++|+|+.|.+.. |.+.+.+++.+.... .-.....|++..|+++||+++|+|++++++ .++++++|
T Consensus 29 ~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~---------~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g--~~~~~~~I 97 (403)
T d1wsta1 29 SDVISLAGGLPAPETFPVETIKKIAVEVLEE---------HADKALQYGTTKGFTPLRLALARWMEKRYD--IPMSKVEI 97 (403)
T ss_dssp SSCEECCCCCCCGGGSCHHHHHHHHHHHHHH---------SHHHHHSCCCSSCCHHHHHHHHHHHHHHHC--CCCTTCEE
T ss_pred CCcEECCCCCCCccccCHHHHHHHHHHHHHh---------CcccccCCCCCcCCHHHHHHHHHHHHHHhC--CCCChHHe
Confidence 3689999986532 445566655552110 013456799999999999999999999887 45789999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHH-hcCCcee
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQ-KRHLKVK 193 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~ 193 (469)
++|+|+++++..++.+++++||.|++++|+|..|...+... |.+++.++.+..+. +...+........ .......
T Consensus 98 ~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 173 (403)
T d1wsta1 98 MTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYY-DPEFISIPLDDKGM---RVDLLEEKLEELRKQGKRVKI 173 (403)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETTEE---CHHHHHHHHHHHHHTTCCCCE
T ss_pred eecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhc-cccceeEeecccCC---ccccccccchhhhhccccccc
Confidence 99999999999999999999999999999999999999887 99999999875442 3333433332222 2233556
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
++++++||||||.++|.+++++|+++|++|+++||+||+|.++.|++....++... +..+++++++|+||.
T Consensus 174 ~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~---------~~~~~~i~~~S~SK~ 244 (403)
T d1wsta1 174 VYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHF---------DDYGRVIYLGTFSKI 244 (403)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGG---------CSSSCEEEEEESTTT
T ss_pred cccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCccccc---------CCCCcEEEEccccce
Confidence 77889999999999999999999999999999999999999988887765555433 145899999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA---GI 349 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---g~ 349 (469)
++ ||+|+||+++++..+........ .....+...|.+..+++..... ..++++.++.+.++++.+.+.|.+. ++
T Consensus 245 ~~-~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 322 (403)
T d1wsta1 245 LA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYL-DEHIPKIIEFYKPRRDAMLEALEEYMPEGV 322 (403)
T ss_dssp TC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred ec-CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHhhccCCe
Confidence 96 99999999996655544333222 2234677888888888777665 8888999999999999999999875 68
Q ss_pred ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 350 SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 350 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
.+..|.+|+|+|+++++..+.. .+++.+ .++||.|.||+.|+.. .++++||+++.++++++++++++|+++
T Consensus 323 ~~~~p~gg~~~~~~~~~~~~~~------~~~~~l-~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~ 395 (403)
T d1wsta1 323 EWTKPEGGMFVRVTLPEGIDTK------LMMERA-VAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAET 395 (403)
T ss_dssp EECCCSBSSEEEEECCTTCCTT------TTHHHH-HHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred EEeCCCceeEEEEECCCCCCHH------HHHHHH-HHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHH
Confidence 8889999999999999765443 244444 4679999999988753 467999999877999999999999999
Q ss_pred HHhhcc
Q 043923 428 VDSITT 433 (469)
Q Consensus 428 l~~~~~ 433 (469)
+++..|
T Consensus 396 l~~~~k 401 (403)
T d1wsta1 396 IKEEMK 401 (403)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.1e-49 Score=389.00 Aligned_cols=338 Identities=22% Similarity=0.349 Sum_probs=283.1
Q ss_pred CeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
++|||++|.+.++ |+.+.+++++.. .....|+++.|+++||++||++++ +++++|++|
T Consensus 26 ~~I~ls~g~p~~~~p~~i~~al~~~l-------------~~~~~Y~~~~G~~elr~aiA~~~~--------~~~~~Iiit 84 (368)
T d1v2da_ 26 GAVNLGQGFPSNPPPPFLLEAVRRAL-------------GRQDQYAPPAGLPALREALAEEFA--------VEPESVVVT 84 (368)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHT-------------TTSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CCEEecCCCCCCCCCHHHHHHHHHHh-------------hcccCCCCCcCCHHHHHHHHhhcc--------cCCcceeec
Confidence 6899999998775 467888777642 334689999999999999999986 789999999
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC-CCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS-LNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+|+++++..++.+++.+||.|++++|+|..+...+... |.+++.++++. .+++.+|++.+++++++ ++++++
T Consensus 85 ~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 157 (368)
T d1v2da_ 85 SGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALL 157 (368)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHTTCCT------TEEEEE
T ss_pred cchHHHHHHHhhccccccccccccCCcchhhhhHHHhc-CCccceeccccccccccCCHHHHHHhhcc------CceEEE
Confidence 99999999999999999999999999999999888887 99999888753 35688999999988765 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.+++.+++++|+++|++||++||+||+|..+.+.... ...... ..++.+++.|+||.+++
T Consensus 158 ~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~sk~~~~ 226 (368)
T d1v2da_ 158 LNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP-RRLREF----------APERTFTVGSAGKRLEA 226 (368)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CCHHHH----------CTTTEEEEEEHHHHTTC
T ss_pred EcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccc-cccccc----------cccccceeecccccccc
Confidence 9999999999999999999999999999999999999875444332 222222 34678889999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhc-ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~ 355 (469)
+|+|+||++++++.+........ ...+++.+.|.++..++....+ .++++..++.++++++++.+.|+++|+++.+|+
T Consensus 227 ~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~ 305 (368)
T d1v2da_ 227 TGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPE 305 (368)
T ss_dssp GGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCS
T ss_pred cccccccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCC
Confidence 99999999997765544333222 2234778889888888877665 667889999999999999999999999999999
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~--~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
+|+|+|++++.. + ..++++++||.++||+.|+.. .++++|||++. +++++++++++|++++
T Consensus 306 g~~~~~~~l~~~----~-------~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 306 GTYFLMAELPGW----D-------AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV 368 (368)
T ss_dssp BSSEEEEECTTC----C-------HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred ceeEEEEeCCcc----H-------HHHHHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHHHHHHHHHHHHhC
Confidence 999999999742 1 234677889999999998753 46899999984 8999999999999874
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=6e-48 Score=381.19 Aligned_cols=336 Identities=19% Similarity=0.265 Sum_probs=273.4
Q ss_pred CCCCCCeeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 34 VQNPTGIIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 34 ~~~~~~~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
+.+|.++||||.|+|+++ ++.+.+++.+. ......||+. +..+||+++|++++ ++++
T Consensus 18 g~~p~~~idls~~~np~~~p~~~~~a~~~~-------------~~~~~~Yp~~-~~~~Lr~aia~~~~--------v~~~ 75 (355)
T d1lc5a_ 18 GISPDQLLDFSANINPLGMPVSVKRALIDN-------------LDCIERYPDA-DYFHLHQALARHHQ--------VPAS 75 (355)
T ss_dssp TSCGGGSEECSSCCCTTCCCHHHHHHHHHT-------------GGGGGSCCCT-TCHHHHHHHHHHHT--------SCGG
T ss_pred CCChhheEEccCCCCCCCCCHHHHHHHHHH-------------HHHhccCCCC-ChHHHHHHHHHHhC--------CCHH
Confidence 345668999999999995 46677777764 2456679765 56999999999986 7899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 113 KIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+|++|+|+++++..++.++ .++.+++..|.|..|....... +..++.+|++.+++|.++. .+.+++. +++
T Consensus 76 ~I~~~~g~~~~~~~~~~~~--~~~~~~v~~p~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~~~~~~------~~~ 145 (355)
T d1lc5a_ 76 WILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLREADGWQLTD-AILEALT------PDL 145 (355)
T ss_dssp GEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCT-THHHHCC------TTC
T ss_pred HEEecccHHHHHHHHHhhh--ccccccccCCccceeccccccc-cccceeeeeeccCCcccee-eeeeccc------ccc
Confidence 9999999999999988877 3455677889998888777776 9999999998777888774 3444433 389
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|+++|||||||.+++.+++++|+++|++|++++|+||+|.++.+...... .... ..+++++++|+||
T Consensus 146 ~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~---~~~~--------~~~~~i~~~S~SK 214 (355)
T d1lc5a_ 146 DCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI---PALK--------DNPHIWVLRSLTK 214 (355)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSG---GGCT--------TCTTEEEEEESTT
T ss_pred ceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccc---cccc--------ccccceeeccccc
Confidence 9999999999999999999999999999999999999999998655544322 1222 4578999999999
Q ss_pred ccCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCce
Q 043923 273 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISC 351 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v 351 (469)
+||+||+|+||++++++.+.+.+.+....+..+.++|.++.+++++..+ +.+.++.++++++++.+.|.++ ++++
T Consensus 215 ~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (355)
T d1lc5a_ 215 FYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAW----QQATWHWLREEGARFYQALCQLPLLTV 290 (355)
T ss_dssp TTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHH----HHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred ccccccccccceeccchhhhHHHHhhcCCccccccccccccccccccch----hHHHHHHHHHHHHHHHHHHhhcCCcEE
Confidence 9999999999999988777777766666677899999999999988544 6777888899999999999988 6665
Q ss_pred ecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 352 LKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 352 ~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
. |.+|+|+|++++.. +.++++.|+ ++||.|+||+.|+...++|+||+++ +++++++++++|++++
T Consensus 291 ~-p~~~~f~~~~~~~~--------~~~~~~~L~-~~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 291 Y-PGRANYLLLRCERE--------DIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL 355 (355)
T ss_dssp C-CCSSSEEEEEESCT--------TCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred C-CCCCEEEEEECCCC--------HHHHHHHHH-HCCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHHhC
Confidence 5 45669999998741 124666665 6699999999998777899999997 7899999999999874
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=3.5e-47 Score=381.85 Aligned_cols=373 Identities=14% Similarity=0.184 Sum_probs=293.4
Q ss_pred ccccccccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccc----ccc--ChHHHHHHHhcCCCccccccCCcccccc
Q 043923 5 SGKATCNTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAE----NQL--SFDLLESWLDRNPDAAGFKRDGQSIFRE 78 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~----n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (469)
|+.+......+.+|+|.....+..++ + ++.|||+.|. +.- .++.++++....... ..
T Consensus 1 ~~~~~~~~~~p~d~i~~~~~~~~~d~-----~-~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~-----------~~ 63 (401)
T d7aata_ 1 SSWWSHVEMGPPDPILGVTEAFKRDT-----N-SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK-----------KM 63 (401)
T ss_dssp CCSSTTCCCCCCCHHHHHHHHHHHCC-----C-TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-----------TC
T ss_pred CCccccCCCCCCChHHHHHHHHhCCC-----C-CCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhC-----------CC
Confidence 56677778888999997776666554 2 3569999983 222 236677765543111 22
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChH-----HHHHHHHHHhcCCCCEEEEccCCCcChHHHHh
Q 043923 79 LALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGAT-----SANETLMFCLAEPGEAFLLPTPYYPGFDRDLK 153 (469)
Q Consensus 79 ~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~-----~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~ 153 (469)
.+.|++..|.++||+++++++.+.++ ..+.++.|+++.|+. +++..+++++++|||+|++++|+|+.|...+.
T Consensus 64 ~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~ 141 (401)
T d7aata_ 64 DKEYLPIAGLADFTRASAELALGENS--EAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR 141 (401)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCC--cccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHH
Confidence 34799999999999999999987655 335677777665533 57788888899999999999999999999999
Q ss_pred hhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccc
Q 043923 154 WRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIY 233 (469)
Q Consensus 154 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay 233 (469)
.. |++++.+|+..++++.++++.+.+.+.. ..++++++++++||||||.+++.+++++|+++|++|+++||+||+|
T Consensus 142 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y 217 (401)
T d7aata_ 142 DA-GLQLQAYRYYDPKTCSLDFTGAMEDISK---IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY 217 (401)
T ss_dssp HT-TCEEEEEECEETTTTEECHHHHHHHHTT---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred Hc-CCeEEEEeccccccccccHHHHHHHHhc---CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccc
Confidence 87 9999999998778889999888877653 2347889999999999999999999999999999999999999999
Q ss_pred cccccCCCCccch--hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH--------Hhccccc
Q 043923 234 SGTVFSSPGFVSI--MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT--------KMSSFGL 303 (469)
Q Consensus 234 ~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~--------~~~~~~~ 303 (469)
.++.|++....+. ..... ..++++++.|+||.++++|+|+||++++...+..... ....+.+
T Consensus 218 ~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (401)
T d7aata_ 218 QGFASGDINRDAWALRHFIE--------QGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSN 289 (401)
T ss_dssp TTTTTSCHHHHTHHHHHHHH--------TTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSS
T ss_pred hhhhcCCcccchhhhhhhhh--------hhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccc
Confidence 9988876432222 11212 4467888999999999999999999997654432211 1123345
Q ss_pred CcHHHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHH
Q 043923 304 VSSQTQYLLSALLSDKKFT---QNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~ 376 (469)
.+.+.|.++..++.+..+. .++++..+++++++|+.+.+.|++++ |.+.++++|||+|+.++.
T Consensus 290 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~---------- 359 (401)
T d7aata_ 290 PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP---------- 359 (401)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH----------
T ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCCH----------
Confidence 6788999999999886542 45667788889999999999999985 456789999999987752
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~ 429 (469)
+++++|++++||.+.|| +|||++.+++++|+.+.++|.++++
T Consensus 360 -e~~~~L~~e~gV~~~pg----------~Ris~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 360 -EQVERLTKEFSIYMTKD----------GRISVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp -HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred -HHHHHHHHhCCEEECCC----------cEEEeccCCHHHHHHHHHHHHHHhC
Confidence 46788999999999987 3999998899999999999998874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-45 Score=359.33 Aligned_cols=322 Identities=17% Similarity=0.285 Sum_probs=256.7
Q ss_pred CCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 38 TGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 38 ~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
.+.|+|+.||||++++. +... ..+.+||+..+ .+||+++|++++ +++|+|++|
T Consensus 27 ~~~i~L~~ne~p~~~~~------~~~~------------~~l~rYPd~~~-~~Lr~~ia~~~g--------v~pe~I~it 79 (354)
T d1fg7a_ 27 NGDVWLNANEYPTAVEF------QLTQ------------QTLNRYPECQP-KAVIENYAQYAG--------VKPEQVLVS 79 (354)
T ss_dssp TCSEECSSCCCSSCCCC------CCCC------------CCTTSCCCSSC-HHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CCCEEeeCCCCCCCCCH------HHHH------------HHHhcCCCCcH-HHHHHHHHHHhC--------CChHHeeec
Confidence 45799999999986531 1111 33568987754 899999999996 789999999
Q ss_pred CChHHHHHHHHHHhcCCCC-EEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 118 AGATSANETLMFCLAEPGE-AFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd-~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+|++++|..+++++++||| .|+++.|+|..|...+... |.+++.++.+ ++|.+|+++++.++. ++++|+
T Consensus 80 ~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~-g~~v~~~~~~--~~~~~d~~~l~~~~~-------~~~~v~ 149 (354)
T d1fg7a_ 80 RGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTL--DNWQLDLQGISDKLD-------GVKVVY 149 (354)
T ss_dssp SHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCC--TTSCCCHHHHHTSCT-------TEEEEE
T ss_pred cCchHHHHHHHHHhhccccccccccccccccchhhhhcc-Cceeeccccc--cccccchhhhhhccc-------ccceee
Confidence 9999999999999999998 5889999999999988888 9999999876 578999999887653 789999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCC
Q 043923 197 VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL 276 (469)
Q Consensus 197 l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 276 (469)
++|||||||.+++.++++.+.+.++ ++.++|+||+|.++.++... ..... ..+++++++||||+||+
T Consensus 150 ~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~----~~~~~--------~~~~~iv~~S~SK~~~l 216 (354)
T d1fg7a_ 150 VCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASL----AGWLA--------EYPHLAILRTLSKAFAL 216 (354)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCS----GGGTT--------TCTTEEEEEESSSTTCC
T ss_pred ccCCCccceeEeeeccccccccccc-ccccccccccchhhcccccc----chhhc--------ccccceEEeCCccccCC
Confidence 9999999999999999999888776 57778888888875433221 11222 45889999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CceecCC
Q 043923 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSN 355 (469)
Q Consensus 277 ~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~ 355 (469)
+|+|+||++++++ +.+.+.+....+.++.+.|.++..++.+.. ..+.....+.+.++++.+.+.+.+++ +....+.
T Consensus 217 aGlRiGy~i~~~~-~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~ 293 (354)
T d1fg7a_ 217 AGLRCGFTLANEE-VINLLMKVIAPYPLSTPVADIAAQALSPQG--IVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS 293 (354)
T ss_dssp GGGCCEEEEECHH-HHHHHHHHSCSSCSCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC
T ss_pred Cccccccccccch-hhhhhhhhcCccchhhHHHHHHHHHHhhhc--cccccccchhhhhHHHHHHHHHHhCCCcceeCCC
Confidence 9999999999555 445566666666688888888877776654 33455666778888899999999985 4455667
Q ss_pred ceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 043923 356 AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 425 (469)
Q Consensus 356 ~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~ 425 (469)
+++|+|+++++ ..++++.|+ ++||.|++++.|.. .++|+||+++ +++++++++++|+
T Consensus 294 ~~~f~~~~~~~---------~~~~~~~L~-~~gIlvr~~~~~~~-~~~~lRisig--t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 294 ETNYILARFKA---------SSAVFKSLW-DQGIILRDQNKQPS-LSGCLRITVG--TREESQRVIDALR 350 (354)
T ss_dssp SSSEEEEEETT---------HHHHHHHHH-HTTEECEECTTSTT-CTTEEEEECC--CHHHHHHHHHHHH
T ss_pred CceEEEEeCCC---------HHHHHHHHH-HCCcEEecCCCCCC-CCCEEEEEeC--CHHHHHHHHHHHh
Confidence 77999999873 224666665 66999999987753 4689999997 7889988888876
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-43 Score=345.50 Aligned_cols=318 Identities=17% Similarity=0.231 Sum_probs=246.4
Q ss_pred CCCCCeeeeeccccccCh-HHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc
Q 043923 35 QNPTGIIQMGLAENQLSF-DLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK 113 (469)
Q Consensus 35 ~~~~~~i~L~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~ 113 (469)
..+.++|+|++|||++++ +.+.+++.+.... .....| |..|.++||+++|++++++ .+++++
T Consensus 16 ~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~-----------~~~~~y-p~~g~~~Lr~aia~~~~~~-----~v~~d~ 78 (334)
T d2f8ja1 16 TEKRDKTYLALNENPFPFPEDLVDEVFRRLNS-----------DALRIY-YDSPDEELIEKILSYLDTD-----FLSKNN 78 (334)
T ss_dssp CCCCCSEECSSCCCSSCCCHHHHHHHHHHCCT-----------TGGGSC-CCSSCHHHHHHHHHHHTCS-----SCCGGG
T ss_pred ccCCCceEEECCCCCCCCCHHHHHHHHHHhhc-----------chhcCC-CCCCcHHHHHHHHHHhccc-----CCCcce
Confidence 345689999999999864 4455554442211 233445 5569999999999999753 268999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK 193 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 193 (469)
|++|+|++++|.++++. ||+|++++|+|..|...+... |++++.+|++++.. .+ +. ...+++
T Consensus 79 I~it~G~~~~l~~l~~~----~d~v~i~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~--~~-~~----------~~~~~~ 140 (334)
T d2f8ja1 79 VSVGNGADEIIYVMMLM----FDRSVFFPPTYSCYRIFAKAV-GAKFLEVPLTKDLR--IP-EV----------NVGEGD 140 (334)
T ss_dssp EEEEEHHHHHHHHHHHH----SSEEEECSSCCHHHHHHHHHH-TCCEEECCCCTTSC--CC-CC----------CCCTTE
T ss_pred EEecCcchhHHHHHhhh----ccccccccccccccccchhcc-CCcccccccccccc--cc-cc----------ccccce
Confidence 99999999999887654 599999999999999999888 99999999986432 21 10 112788
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccc
Q 043923 194 GVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKD 273 (469)
Q Consensus 194 ~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 273 (469)
+++++|||||||.+++.++++++ .++++++|+||+|.++.+.... . ... ..+++++++|+||+
T Consensus 141 ~l~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~~---~--~~~--------~~~~~i~~~S~SK~ 203 (334)
T d2f8ja1 141 VVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESYV---D--FLK--------KYENLAVIRTFSKA 203 (334)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCCG---G--GGG--------TCSSEEEEEESTTT
T ss_pred EEEecccccccceeecHHHhhcc----ccceeEEeecccchhhcccccc---c--ccc--------cCceEEEEecCccc
Confidence 99999999999999998886553 4689999999999764332221 1 111 45899999999999
Q ss_pred cCCCcceEEEEEecCHHHHHHHHHhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 043923 274 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK 353 (469)
Q Consensus 274 ~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~ 353 (469)
++++|+|+||+++++ .+...+......+.++.++|.++.+++.+.+ ++++.++.++++++.+.+.|+++|+++.+
T Consensus 204 ~~~~G~R~G~~~~~~-~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~ 278 (334)
T d2f8ja1 204 FSLAAQRVGYVVASE-KFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRITD 278 (334)
T ss_dssp SSCTTTCEEEEEECH-HHHHHHHHHSCTTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTCEECC
T ss_pred cchhhhhhhhcccch-HHHHHHHHhhcccccchhhhhhccccccccc----chhhHHHHHHHHHHHHHHHHHHCCCeECC
Confidence 999999999999954 4555666666667789999999888887644 47778889999999999999999999998
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+.|+ |+|+.++. .+..++++.|+ ++||.|+++ ++|+|||++ +++++++++++|+++
T Consensus 279 ~~g~-f~~~~~~~-------~~~~~~~~~L~-~~GI~vr~~-------~~~vRis~g--~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 279 SRGN-FVFVFMEK-------EEKERLLEHLR-TKNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (334)
T ss_dssp CCSS-EEEEECCH-------HHHHHHHHHHH-HTTEECEEE-------TTEEEEECC--CHHHHHHHHHHHHHC
T ss_pred CCce-EEEEECCC-------CCHHHHHHHHH-HCCCEECCC-------CCeEEEEcC--CHHHHHHHHHHHhcC
Confidence 8775 78998875 23345666665 569999753 468999997 688899999988763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=1.1e-43 Score=357.24 Aligned_cols=373 Identities=15% Similarity=0.162 Sum_probs=278.5
Q ss_pred ccCCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccc----cccC--hHHHHHHHhcCCCccccccCCcccccccccCCC
Q 043923 11 NTHGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAE----NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQD 84 (469)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~----n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 84 (469)
...-+-+|+|.--..+..++ +| +.|||++|. +..+ ++.++++.+..... -...+.|++
T Consensus 8 ~~~~~~d~i~~~~~~~~~d~-----~~-~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~----------~~~~~~Y~p 71 (412)
T d1yaaa_ 8 IELLPPDALFGIKQRYGQDQ-----RA-TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND----------SSYNHEYLG 71 (412)
T ss_dssp CCCCCCCTTHHHHHHHHTCC-----CS-SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTC----------TTCCCCCCC
T ss_pred CCcCCCChHHHHHHHHhcCC-----CC-CcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhC----------cccCCCCCC
Confidence 33444557776655565554 33 459999982 2222 36677665442110 123457999
Q ss_pred CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEE--eCChHHHHHHHH--HHhcCCCCEEEEccCCCcChHHHHhhhCCCEE
Q 043923 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVL--TAGATSANETLM--FCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEI 160 (469)
Q Consensus 85 ~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~--t~G~~~al~~~~--~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~ 160 (469)
..|.++||+++++++.+..+.. +..+.++. +.|+..++..++ ..+..+||.|++++|+|+.|...+... |.++
T Consensus 72 ~~G~~~lr~aia~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~-g~~~ 148 (412)
T d1yaaa_ 72 ITGLPSLTSNAAKIIFGTQSDA--LQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKT 148 (412)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHH--HHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCE
T ss_pred CCCCHHHHHHHHHHHhcccCcc--ccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHc-CCce
Confidence 9999999999999998765421 23333332 344555544443 345689999999999999999999887 9999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+.+|+..++++.++.+.++..+... .++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~ 225 (412)
T d1yaaa_ 149 ATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGD 225 (412)
T ss_dssp EEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSC
T ss_pred ecccccccccccccchhhhcccccC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCC
Confidence 9999987788889988888877642 3367788999999999999999999999999999999999999999988876
Q ss_pred CCccchhh--hhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH------HHHHH------HhcccccCcH
Q 043923 241 PGFVSIME--ILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV------VAAAT------KMSSFGLVSS 306 (469)
Q Consensus 241 ~~~~s~~~--~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~------~~~~~------~~~~~~~~s~ 306 (469)
....+... .... .+..++++++.|+||.|+++|+|+||++++++.+ .+... ....+.+++.
T Consensus 226 ~~~~~~~~~~~~~~-----~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (412)
T d1yaaa_ 226 LDKDAYAVRLGVEK-----LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPA 300 (412)
T ss_dssp HHHHTHHHHHHHHH-----TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCH
T ss_pred cccchhhhhhhhhc-----cccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 43222211 1110 0145789999999999999999999999875422 11110 1123445788
Q ss_pred HHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHH
Q 043923 307 QTQYLLSALLSDKKFT---QNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l 379 (469)
+.|.++..++.+..+. .++++..++.++++|+.+.+.|+++| |++.++++|+|+|+.++. ++
T Consensus 301 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~-----------e~ 369 (412)
T d1yaaa_ 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QM 369 (412)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcCH-----------HH
Confidence 9999999999986532 56677888999999999999999885 566788999999987752 46
Q ss_pred HHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 380 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
+++|++++||.+.||. ||++++++++.++.+.++|+++++.+
T Consensus 370 ~~~L~~e~~V~~~~g~----------Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 370 VKRLEETHAVYLVASG----------RASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp HHHHHHHHCEECCTTS----------EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCEEECCCC----------EEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 8889999999998863 99998889999999999999998753
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=3e-43 Score=354.26 Aligned_cols=366 Identities=13% Similarity=0.150 Sum_probs=272.9
Q ss_pred CCccchhhhhhhcCCCCCCCCCCCeeeeeccc---cc--c-ChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcH
Q 043923 16 DSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAE---NQ--L-SFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLP 89 (469)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~---n~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~ 89 (469)
-+++|.-...+..++ .++.|||++|. +. . .++.++++.+..... -...+.|++..|.+
T Consensus 14 ~~~i~~l~~~~~~d~------~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~----------~~~~~~Y~p~~G~p 77 (412)
T d1ajsa_ 14 PVLVFKLIADFREDP------DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----------SSLNHEYLPILGLA 77 (412)
T ss_dssp CCHHHHHHHHHHTCC------CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCH
T ss_pred CChHHHHHHHHhcCC------CCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhC----------CCcCCCCCCCCCCH
Confidence 356666666665543 23569999993 11 1 235667665442110 02245799999999
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCc--EEEeCChHHHHHHHHHH-------hcCCCCEEEEccCCCcChHHHHhhhCCCEE
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSK--IVLTAGATSANETLMFC-------LAEPGEAFLLPTPYYPGFDRDLKWRTGVEI 160 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~--i~~t~G~~~al~~~~~~-------l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~ 160 (469)
+||+++++++.+..+. .++.++ ++.|.|++.++..+..+ +.+|||.|++++|+|+.|...+... |.+.
T Consensus 78 ~lreaia~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~-G~~~ 154 (412)
T d1ajsa_ 78 EFRTCASRLALGDDSP--ALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKD 154 (412)
T ss_dssp HHHHHHHHHHHCTTCH--HHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSC
T ss_pred HHHHHHHHHHhccCCc--ccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHc-CCeE
Confidence 9999999999766542 234555 44566666555554443 3699999999999999999999988 8876
Q ss_pred EEe-eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 161 VPI-QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 161 ~~v-~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
+.+ +...++.+..|++.+++.+... .++++++++|+||||||.++|.+++++|+++|++|+++||+||+|.++.|+
T Consensus 155 v~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~ 231 (412)
T d1ajsa_ 155 IRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 231 (412)
T ss_dssp EEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred EEeecccccccccccHHHHHHHHHhc---cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcC
Confidence 554 4444566778888887766542 347889999999999999999999999999999999999999999998887
Q ss_pred CCCccc--hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH---H-----hcccccCcHHHH
Q 043923 240 SPGFVS--IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---K-----MSSFGLVSSQTQ 309 (469)
Q Consensus 240 ~~~~~s--~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~---~-----~~~~~~~s~~~q 309 (469)
+..... ...... ..+.++++.|+||.++++|+|+||++++......... . ...+.+++...|
T Consensus 232 ~~~~~~~~~~~~~~--------~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (412)
T d1ajsa_ 232 NLEKDAWAIRYFVS--------EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGA 303 (412)
T ss_dssp CHHHHTHHHHHHHH--------TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHH
T ss_pred Ccccchhhhhhhhh--------hcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHH
Confidence 643222 222222 4478888999999999999999999997544322211 1 123345677889
Q ss_pred HHHHHHhcCchh---hHHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHH
Q 043923 310 YLLSALLSDKKF---TQNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKK 382 (469)
Q Consensus 310 ~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ 382 (469)
.++..++.+..+ ..++++..+++++++++.+.+.|++++ +.+.++++|+|+|+.+.. +.+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~-----------~~v~~ 372 (412)
T d1ajsa_ 304 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEY 372 (412)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCH-----------HHHHH
Confidence 988888887543 255677788999999999999999985 455678899999987652 45778
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhc
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~~ 432 (469)
|++++||.+.||. ||+++++++++++.+.++|.+++++.+
T Consensus 373 L~~e~gV~~vpg~----------Ri~~ag~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 373 LINQKHIYLLPSG----------RINMCGLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp HHHTTCEECCTTS----------EEEGGGCCTTTHHHHHHHHHHHHHHCC
T ss_pred HHHhCCEEEeCCC----------eEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 8999999999874 999987899999999999999998764
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-45 Score=366.73 Aligned_cols=365 Identities=12% Similarity=0.160 Sum_probs=278.7
Q ss_pred CCCCccchhhhhhhcCCCCCCCCCCCeeeeeccc---ccc--C-hHHHHHHHhcCCCccccccCCcccccccccCCCCCC
Q 043923 14 GQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAE---NQL--S-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHG 87 (469)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~---n~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g 87 (469)
=+.+|+|-...++..++ +| +.|||+.|. +.. | ++.++++.+..... -.....|++..|
T Consensus 8 ~~~dpi~~~~~~~~~d~-----~~-~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~----------~~~~~~Y~p~~G 71 (397)
T d3tata_ 8 YAGDPILTLMERFKEDP-----RS-DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ----------PHGASLYLPMEG 71 (397)
T ss_dssp CCCCTTTTHHHHHHHSC-----CS-SCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTS----------CCSSBCCCCTTC
T ss_pred CCCCcHHHHHHHHhcCC-----CC-CcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhC----------cccCCCCCCccc
Confidence 35667776555565555 22 459999983 222 2 36677776543111 023457999999
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHH----HHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSA----NETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~a----l~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v 163 (469)
.++||+++|+++.+.++ ..+++++|+++.|++++ +.+++..++.|||.|++++|+|+.|...++.. |.+++.+
T Consensus 72 ~~~lR~aia~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~-G~~~~~v 148 (397)
T d3tata_ 72 LNCYRHAIAPLLFGADH--PVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTY 148 (397)
T ss_dssp CHHHHHHHHHHHTCSSC--HHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTT-TCCCEEC
T ss_pred CHHHHHHHHHHHhhccC--CcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHc-CCEEEEE
Confidence 99999999999987665 33578889888876664 55666667899999999999999999999987 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
|++.++++..|.+.+.+.+.. ..+++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~ 225 (397)
T d3tata_ 149 PWYDEATNGVRFNDLLATLKT---LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEED 225 (397)
T ss_dssp CCCCTTTSSCCHHHHHHHHTT---CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHH
T ss_pred ecchhhccccchHHHHHHhhh---cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCccc
Confidence 998888888888887776543 23477889999999999999999999999999999999999999999988765432
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH------HHH--hcccccCcHHHHHHHHHH
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA------ATK--MSSFGLVSSQTQYLLSAL 315 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~------~~~--~~~~~~~s~~~q~~~~~~ 315 (469)
.+....... ..++++++.|+||.++++|+|+||++++...+... ... .....+++...|.++..+
T Consensus 226 ~~~~~~~~~-------~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 298 (397)
T d3tata_ 226 AYAIRAIAS-------AGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAV 298 (397)
T ss_dssp HHHHHHHHT-------TTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHH
T ss_pred chhhhhhhh-------cCCceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHh
Confidence 333333221 44789999999999999999999999875433211 111 122344667888888888
Q ss_pred hcCchhh---HHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCC
Q 043923 316 LSDKKFT---QNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVK 388 (469)
Q Consensus 316 l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~G 388 (469)
+.+..+. .++++..+++++++++.+.+.|.+++ |.+.++++|+|+|+.++. +++++|++++|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~~ 367 (397)
T d3tata_ 299 LNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFG 367 (397)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCH-----------HHHHHHTTTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcCH-----------HHHHHHHHhCC
Confidence 8876542 34455667778888888888887763 677789999999998863 46788999999
Q ss_pred eEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 043923 389 LNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 389 I~v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l 428 (469)
|.+.||. ||+++++++++++.+.++|++++
T Consensus 368 V~l~~g~----------Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 368 VYLIASG----------RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp EECCSSS----------CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred EEeCCCC----------EEEeccCCHHHHHHHHHHHHHhC
Confidence 9999873 99998889999999999998764
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-43 Score=354.68 Aligned_cols=352 Identities=14% Similarity=0.199 Sum_probs=264.1
Q ss_pred CCCCCCCCCeeeeeccc----cccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcC
Q 043923 31 YDEVQNPTGIIQMGLAE----NQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRG 104 (469)
Q Consensus 31 ~~~~~~~~~~i~L~~~~----n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~ 104 (469)
|....+| +.|||+.|. +..+ ++.+.++.++..+. ...+.|++..|+++||+++|+++.++++
T Consensus 20 ~~~d~~~-~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~-----------~~~~~Y~p~~G~~~lR~aia~~~~~~~~ 87 (396)
T d2q7wa1 20 FRADERP-GKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-----------ETTKNYLGIDGIPEFGRCTQELLFGKGS 87 (396)
T ss_dssp ---------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred HhccCCC-CcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhC-----------CCCCCCCCCcCCHHHHHHHHHHHHhhcC
Confidence 3333344 459999982 2222 35677666543111 2345799999999999999999987665
Q ss_pred CCCCCCCCc--EEEeCChHHHHHHHHH--HhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHH
Q 043923 105 NKVTFDTSK--IVLTAGATSANETLMF--CLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEE 180 (469)
Q Consensus 105 ~~~~~~~~~--i~~t~G~~~al~~~~~--~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 180 (469)
.. +.++. ++++.|++.++.+++. ....+||.|++++|+|+.|...+... |.+++.+|+..++++..+...+..
T Consensus 88 ~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 164 (396)
T d2q7wa1 88 AL--INDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALIN 164 (396)
T ss_dssp HH--HHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHH
T ss_pred Cc--ccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHc-CCeeEecccccccccccccchHHH
Confidence 22 33333 4467777666665544 34689999999999999999999887 999999999877777777777766
Q ss_pred HHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCc
Q 043923 181 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQV 260 (469)
Q Consensus 181 ~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~ 260 (469)
.... ...++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+......+ .
T Consensus 165 ~~~~---~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~-------~ 234 (396)
T d2q7wa1 165 SLNE---AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA-------M 234 (396)
T ss_dssp HHTT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH-------H
T ss_pred HHHH---hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhh-------h
Confidence 5542 23477889999999999999999999999999999999999999999988875433333333222 3
Q ss_pred CCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH--------hcccccCcHHHHHHHHHHhcCchh---hHHHHHHH
Q 043923 261 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKF---TQNYISEN 329 (469)
Q Consensus 261 ~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~ 329 (469)
.++++++.|+||.++++|+|+||++++...+...... ...+.+.+...|.++..++.+... ..++++..
T Consensus 235 ~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 314 (396)
T d2q7wa1 235 HKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDM 314 (396)
T ss_dssp CSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 4788889999999999999999999976544322111 123345677888888888887542 25677788
Q ss_pred HHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeE
Q 043923 330 KKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 405 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~i 405 (469)
+++++++++.+.+.|++++ |.+..+++|+|.|+.++. +++++|++++||.+.||+
T Consensus 315 ~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~-----------e~~~~L~~e~gV~~~~g~---------- 373 (396)
T d2q7wa1 315 RQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVASG---------- 373 (396)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCCH-----------HHHHHHHHhCCEEECCCC----------
Confidence 8899999999999999986 455678889999988763 467889999999998874
Q ss_pred EEEeecCCHHHHHHHHHHHHHHH
Q 043923 406 RVCFANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 406 Ri~~~~~~~e~i~~~l~~L~~~l 428 (469)
||+++.+++++|+++.++|++++
T Consensus 374 Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 374 RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHHHHHHhC
Confidence 99998889999999999998864
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=5.7e-42 Score=342.91 Aligned_cols=364 Identities=13% Similarity=0.181 Sum_probs=272.1
Q ss_pred CCCCCccchhhhhhhcCCCCCCCCCCCeeeeeccc----cc--cChHHHHHHHhcCCCccccccCCcccccccccCCCCC
Q 043923 13 HGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLAE----NQ--LSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYH 86 (469)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~~----n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 86 (469)
..+.+|++--...+..++ .++.|||+.|. +. .+++.++++++...+. ...+.|++..
T Consensus 7 ~~~~d~i~~l~~~~~~d~------~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~-----------~~~~~Y~p~~ 69 (394)
T d2ay1a_ 7 PQAPDKILALMGEFRADP------RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-----------ETTKTYAGLS 69 (394)
T ss_dssp CCCCCSHHHHHHHHHHCC------CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-----------CCCCCCCCSS
T ss_pred CCCCChHHHHHHHHhCCC------CCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhC-----------CCCCCCCCCC
Confidence 345567776656665553 23569999983 22 2346677776653211 2235799999
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCC-hHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAG-ATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G-~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
|+++||+++++++.+..+. ....+.++++.| +..++...+..+.++||.|++++|+|+.|...++.. |.+++.+|+
T Consensus 70 G~~~lr~aia~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~-g~~~v~~~~ 146 (394)
T d2ay1a_ 70 GEPEFQKAMGELILGDGLK--SETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRY 146 (394)
T ss_dssp CCHHHHHHHHHHHHGGGCC--GGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEEC
T ss_pred CCHHHHHHHHHHHhccccc--cccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHc-CCEEEEecc
Confidence 9999999999999876542 123334444333 344466666677899999999999999999999988 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
..++.+..+.+.+++.... ..++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~ 223 (394)
T d2ay1a_ 147 FDAETRGVDFEGMKADLAA---AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAA 223 (394)
T ss_dssp EETTTTEECHHHHHHHHHT---CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHH
T ss_pred cchhcccccchhHHHHHhh---cccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccch
Confidence 7767777777777766543 2336778889999999999999999999999999999999999999998777543333
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH--------HhcccccCcHHHHHHHHHHhc
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT--------KMSSFGLVSSQTQYLLSALLS 317 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~--------~~~~~~~~s~~~q~~~~~~l~ 317 (469)
....... ...+++++.|+||.++++|+|+||++++...+..... ........+...|.++..++.
T Consensus 224 ~~~~~~~-------~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (394)
T d2ay1a_ 224 GTRLIAS-------RIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLT 296 (394)
T ss_dssp HHHHHHH-------HCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHH
T ss_pred hhhhhhh-------hcccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcC
Confidence 3322221 3357888999999999999999999987654432211 112233456678888888887
Q ss_pred Cchh---hHHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeE
Q 043923 318 DKKF---TQNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 318 ~~~~---~~~~~~~~~~~l~~~~~~l~~~L~~~g----~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~ 390 (469)
+..+ ..++++..+++++++++.+.+.|++++ |.+.++++|+|+|+.++. +++++|++++||.
T Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------~~~~~L~~~~~V~ 365 (394)
T d2ay1a_ 297 TPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIY 365 (394)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcCH-----------HHHHHHHHhCCEE
Confidence 7543 255667788899999999999998873 567788999999998753 4678899999999
Q ss_pred EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 043923 391 ISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 427 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~ 427 (469)
+.||. ||+++.+++++++.+.++|.++
T Consensus 366 ~~~g~----------Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 366 MVGDS----------RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp CCTTC----------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred ecCCC----------EEEecCCCHHHHHHHHHHHHHh
Confidence 99873 9999988999999999998875
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=6.9e-39 Score=320.50 Aligned_cols=333 Identities=15% Similarity=0.159 Sum_probs=239.5
Q ss_pred CCCeeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCC--C--CcHHHHHHHHHHHHhHcCCCCCCCCC
Q 043923 37 PTGIIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDY--H--GLPAFKKALVEFMSEIRGNKVTFDTS 112 (469)
Q Consensus 37 ~~~~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~--~--g~~~Lr~aia~~l~~~~~~~~~~~~~ 112 (469)
|.-++|++.|++.+..++-.+...+. ..-..+- ....|.-. . -.++|+++|++++....+ ..++..
T Consensus 55 ~~~~~~~~~gdp~~~~~~w~~~~~~~----~~~~~~~----~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gn--a~t~~~ 124 (425)
T d2hoxa1 55 QGCSADVASGDGLFLEEYWKQHKEAS----AVLVSPW----HRMSYFFNPVSNFISFELEKTIKELHEVVGN--AAAKDR 124 (425)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHH----CEEECTT----TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTC--BCCTTC
T ss_pred CCceeeCCCCCCCCCCHHHHhCcccc----eEEeecc----cccceecCCccccCCHHHHHHHHHHHhhhCC--CCCCCC
Confidence 44579999999888765332222221 0000010 01112211 1 138999999999976644 334566
Q ss_pred cEEEeCChHHHHHHHHHHh--------cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 113 KIVLTAGATSANETLMFCL--------AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 113 ~i~~t~G~~~al~~~~~~l--------~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
+|++++|++|+|.+++.+| ..|||+|+++.|+|+.|...+... +.+... |.+|.+.+++++++
T Consensus 125 ~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~-~~~~~~--------~~~D~~~~~~~~~~ 195 (425)
T d2hoxa1 125 YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF-DKKGYV--------WAGNAANYVNVSNP 195 (425)
T ss_dssp EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS-CBTTEE--------EEEEGGGGTTCSCG
T ss_pred EEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc-CCCCCc--------cCCCHHHHHhhCCC
Confidence 7999999999999999999 468999999999999998888776 665444 44556666655543
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
+++++++||||||||.+.. +..+++.+|.||+|.+..|. ++. . ..+++
T Consensus 196 ------~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~-----~~~---~--------~~~~~ 243 (425)
T d2hoxa1 196 ------EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT-----PIK---Y--------KADED 243 (425)
T ss_dssp ------GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS-----CCC---S--------CBCCS
T ss_pred ------CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCcccc-----chh---h--------hcCCe
Confidence 8899999999999998732 22468999999999643332 211 1 34789
Q ss_pred EEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc--ccCcHHHHHHHHHHhcCch--------hhHHHHHHHHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQYLLSALLSDKK--------FTQNYISENKKRLK 334 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~--------~~~~~~~~~~~~l~ 334 (469)
|+++||||+||++|+|+||++++++.+.+.+.+...+ .+++.++|.++..+|.... ...++.+..++.++
T Consensus 244 Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (425)
T d2hoxa1 244 ILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLR 323 (425)
T ss_dssp EEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHH
T ss_pred EEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888887766555433 4578899998888876421 11345677788899
Q ss_pred HHHHHHHHHHHhcCCc---------------eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC
Q 043923 335 QRHRKLVSGLEKAGIS---------------CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC 399 (469)
Q Consensus 335 ~~~~~l~~~L~~~g~~---------------v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~ 399 (469)
++++.+.+.|++.+.. ...+..+.|+|+++.... .+.+.++|+++||.++||+.|+.
T Consensus 324 ~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~--------~~~~~~lL~e~gI~v~pGs~FG~ 395 (425)
T d2hoxa1 324 ERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE--------DKDCYQTFQNGRINTQNGVGFEA 395 (425)
T ss_dssp HHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG--------GCSHHHHHHHTTEECEEGGGGTS
T ss_pred HHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh--------HHHHHHHHHhCCEEEEechhcCC
Confidence 9999999999876421 112333457888876321 12456678899999999999974
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 400 TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 400 ~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+++|+||++.. +++++++++++|++++++
T Consensus 396 -~~~yvRisl~~-~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 396 -SSRYVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp -CTTEEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred -CCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 57899999985 889999999999999975
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=1.5e-28 Score=242.22 Aligned_cols=302 Identities=11% Similarity=0.036 Sum_probs=200.2
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEc-cCCCcChHHHHhhhCCCEEEEee
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLP-TPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~-~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
.+.+++++..+++++. ...+++++++|+++|+..++.++..+++.|+++ .|+|..+...++.. |++++..
T Consensus 50 ~~~~~l~~~~~~~~~~-------~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~-g~~~v~~- 120 (366)
T d2aeua1 50 YFAEKVNEYGLKHLGG-------DENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIV-NAKYFES- 120 (366)
T ss_dssp HHHHHHHHHHHHHHTC-------CTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE-
T ss_pred hhHHHHHHHHHHHccC-------CCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHHHhc-CCeEECC-
Confidence 3567888888888751 356789999999999999999986554544554 68999999998887 9986532
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
+ |++++++++++ ++++|++++|+||+ +++.+++++|+++|++||+++|+||+|+..+++.....
T Consensus 121 -~-------d~e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~ 184 (366)
T d2aeua1 121 -D-------KVGEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQP 184 (366)
T ss_dssp -S-------CHHHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCC
T ss_pred -C-------CHHHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCC
Confidence 2 68899888865 89999999999985 46888999999999999999999999987766543333
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-cc-ccCcHHHHHHHHHHhcCchh-
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SF-GLVSSQTQYLLSALLSDKKF- 321 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-~~-~~~s~~~q~~~~~~l~~~~~- 321 (469)
+.... +..+++.|+||++ +|+|+||+++++..+. .+.... .+ ..++++.|+++.+.|+....
T Consensus 185 ~~~~~------------~~di~~~S~sK~~--~g~~~G~i~~~~~~i~-~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~ 249 (366)
T d2aeua1 185 PALKL------------GADLVVTSTDKLM--EGPRGGLLAGKKELVD-KIYIEGTKFGLEAQPPLLAGIYRALKNFNLE 249 (366)
T ss_dssp CHHHH------------TCSEEEEETTSSS--SSCSCEEEEEEHHHHH-HHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH
T ss_pred CHhhc------------CceEEEecccccc--cccceeEEEecHHHHH-HHHHHHhcccccCCHHHHHHHHHHHHhccHH
Confidence 33222 4457889999966 6899999999665444 343332 22 34677888888777754321
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCC
Q 043923 322 -TQNYISENKKRLKQRHRKLVSGLEKA-GI--SCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSC 397 (469)
Q Consensus 322 -~~~~~~~~~~~l~~~~~~l~~~L~~~-g~--~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f 397 (469)
++++.+..++......+.+....... ++ .+..+.+++|+|......... ...+..+++.+|++++||.+.||..|
T Consensus 250 r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~Ll~~~gV~~ip~~~~ 328 (366)
T d2aeua1 250 RIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI-NIKKLIEIGFNLLKNYGIITITVAGM 328 (366)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH-HHHHHHHHHHHHHHHHCEECSTTSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee-cccCHHHHHHHHHHhCCEEEEECCCC
Confidence 11111111111111112222222211 22 233344557777765532211 12345678899999999999999888
Q ss_pred CCCCCCeEEEEeecCCHH--HHHHHHHHHHHHHH
Q 043923 398 HCTEPGWFRVCFANMSED--TLKLSMQRLKAFVD 429 (469)
Q Consensus 398 ~~~~~~~iRi~~~~~~~e--~i~~~l~~L~~~l~ 429 (469)
. .+.+++||+++..+.+ +.+.++++|.+.++
T Consensus 329 p-~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK 361 (366)
T d2aeua1 329 P-GASKSLRIDLTSRDAERIDDNYIIKAIVESIK 361 (366)
T ss_dssp C-SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred C-CCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence 4 3677899999852222 23444555544444
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=1.3e-26 Score=227.69 Aligned_cols=301 Identities=17% Similarity=0.228 Sum_probs=201.7
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTS 167 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (469)
+..+++.+|++++ .|.+++|+|+++|+.+++.+++++||.|+++.|+|.+....+... |++++.+|++.
T Consensus 49 ~~~~~~~~A~~~g----------~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~-g~~v~~v~~~~ 117 (364)
T d2e7ja1 49 HDFIHNQLPKFLG----------CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNIALVPKTD 117 (364)
T ss_dssp HHHHHTHHHHHTT----------SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEEEEECCCC
T ss_pred HHHHHHHHHHHhC----------cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhc-cceEEEeeecc
Confidence 4567888888875 578999999999999999999999999999999998887778777 99999999987
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchh
Q 043923 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIM 247 (469)
Q Consensus 168 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~ 247 (469)
.+++.+|++++++.+++..+ ..++++|++++|+||||.+.+ +++|+++|++||+++++|++|+...+ + .+..
T Consensus 118 ~~~~~i~~~~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~---~-~~~~ 189 (364)
T d2e7ja1 118 YPDYAITPENFAQTIEETKK-RGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM---P-VSLK 189 (364)
T ss_dssp TTTCCCCHHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB---C-CCHH
T ss_pred ccccccCHHHHHhhhhhhcc-cCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh---h-hccc
Confidence 77889999999999987432 236788999999999999988 45589999999999999999973211 1 2333
Q ss_pred hhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcc-------c--ccCcHHHHHHHHHHhcC
Q 043923 248 EILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-------F--GLVSSQTQYLLSALLSD 318 (469)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~-------~--~~~s~~~q~~~~~~l~~ 318 (469)
++ +..+++.|++|++|.+| ++||++++++.+......... + .........++.+.+.
T Consensus 190 ~~------------g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 255 (364)
T d2e7ja1 190 EI------------GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP- 255 (364)
T ss_dssp HH------------TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH-
T ss_pred cc------------ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHH-
Confidence 33 34578889999999666 899999976544322211111 1 1111222222222221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC--CceEEEEEecccccc--cCChhHHHHHHHHHHHhCCeEEe-C
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS--NAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYDVKLNIS-P 393 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~--~~g~~~~v~~~~~~~--~~~~~~~~~l~~~ll~~~GI~v~-p 393 (469)
...++++...+.+ ++.+++.+.|++.|+.+... .....+++..+.... ... ..........+...|+... +
T Consensus 256 --~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 331 (364)
T d2e7ja1 256 --HVRERIKRWDEEV-EKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKA-KGGRFFLYRELKSRKIHGIKP 331 (364)
T ss_dssp --HHHHHGGGHHHHH-HHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHS-SSGGGHHHHHHHHTTEECSCT
T ss_pred --HHHHHHHHHHHHH-HHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHh-hccchHHHHHHHhcCCceecC
Confidence 1122333333333 34567788888888876532 222233444432110 000 0001123334455677533 2
Q ss_pred CCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 043923 394 GSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 394 g~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~~ 431 (469)
| ....+|++.-..+++++++++++|+++++++
T Consensus 332 g------~~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 332 G------LTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp T------CCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred C------CcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 2 2446777754468999999999999999875
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.92 E-value=3.2e-24 Score=212.18 Aligned_cols=291 Identities=16% Similarity=0.202 Sum_probs=192.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHH----HhhhCCCEEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVP 162 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~ 162 (469)
..++|+.+|++++ +++++|++|+|+|+++..++.++ .++||.|+++++.|+..... .+.. |++++.
T Consensus 52 ~~~~r~~la~~~~--------~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~-g~~~~~ 122 (381)
T d1elua_ 52 IAQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARF-GITYRF 122 (381)
T ss_dssp HHHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHH-CCEEEE
T ss_pred HHHHHHHHHHHhC--------CCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeeccccccccc-cccccc
Confidence 3567788888875 67899999999999999999998 58999999999999765443 3345 999999
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc----CeEEEEecccccccc
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK----NIHLISDEIYSGTVF 238 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~----~~~iI~Deay~~~~~ 238 (469)
+|.+.......+.+.++++++ ++++++++++++||||.+++.++ |.++|+++ ++++++|.+++ +
T Consensus 123 v~~~~~~~~~~~~~~l~~~i~------~~t~~v~i~~~~n~tG~~~~~~~---I~~l~~~~~~~~~~~~~vD~~~~---~ 190 (381)
T d1elua_ 123 FPVAATLNQGDAAAVLANHLG------PKTRLVILSHLLWNTGQVLPLAE---IMAVCRRHQGNYPVRVLVDGAQS---A 190 (381)
T ss_dssp ECCGGGSSSSCHHHHHHTTCC------TTEEEEEEESBCTTTCCBCCHHH---HHHHHHHCCSSSCCEEEEECTTT---B
T ss_pred cccccccccchHHHHHHhhhc------ccccccccccccccccccchhhH---HHHHHhhcccccccccccccccc---c
Confidence 997643322222444544443 38999999999999999999766 66677664 69999999987 3
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--------------------
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-------------------- 298 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-------------------- 298 (469)
+..+ ..+. ..+..+++.|++|+++ .+.++|+++..+..........
T Consensus 191 g~~~-~~~~------------~~~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 256 (381)
T d1elua_ 191 GSLP-LDFS------------RLEVDYYAFTGHKWFA-GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEG 256 (381)
T ss_dssp TTBC-CCTT------------TSCCSEEEEESSSTTC-CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSG
T ss_pred cccc-cccc------------cccccccccccccccc-ccchhhHHHhhHHHHHhcCccccccccccccccccccccccc
Confidence 3211 2211 2255678889999997 4456788887554332110000
Q ss_pred ---cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec---CCceEEEEEecccccccC
Q 043923 299 ---SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK---SNAGLFCWVDMRHLLRSN 371 (469)
Q Consensus 299 ---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~---~~~g~~~~v~~~~~~~~~ 371 (469)
...++.+.....++.+++..... ....+.+.++..++++++.+.|+++ |+++.. +.++ ++++.+++...
T Consensus 257 ~~~~~~gt~~~~~~~~~~~a~~~~~~-~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~~~-- 332 (381)
T d1elua_ 257 GKRFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSPLG-- 332 (381)
T ss_dssp GGGGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSSSC--
T ss_pred ccccccccccchhhhhhhhhhhhHHH-hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCCCC--
Confidence 01122334444443333332111 0012344566677788899999987 666653 3343 56666654221
Q ss_pred ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeecC-CHHHHHHHHHHHHHH
Q 043923 372 TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLSMQRLKAF 427 (469)
Q Consensus 372 ~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~~~ 427 (469)
. +.+.+.|+++||.++... .++++|+|++.. +++|+++++++|+++
T Consensus 333 ----~-~~i~~~L~~~gi~v~~~~-----~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 333 ----H-RAIVQKLEEQRIYLRTIA-----DPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp ----H-HHHHHHHHHTTEECEEET-----TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred ----H-HHHHHHHHhCCcEEEecC-----CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 1 223455678899886421 367999999853 899999999999864
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.1e-23 Score=207.07 Aligned_cols=294 Identities=15% Similarity=0.197 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCCEEEEccCCCcChHHHH---hhhCCCEEE
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL----AEPGEAFLLPTPYYPGFDRDL---KWRTGVEIV 161 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~Vl~~~P~y~~~~~~~---~~~~g~~~~ 161 (469)
.++|+.+|++++ +++++|++|+|+++++..++.++ .++||.|++.++.|+.+...+ +.. |+++.
T Consensus 51 ~~~R~~iA~~lg--------~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~-G~~v~ 121 (391)
T d1p3wa_ 51 DIARNQIADLVG--------ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEVT 121 (391)
T ss_dssp HHHHHHHHHHHT--------CCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHHHcC--------CCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHc-CCEEE
Confidence 467888999886 68999999999999999888765 479999999999998875443 344 99999
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.+|.+. ...+|++++++++++ ++++|++++|+||||.+++.++ |.++|+++|+++++|.+|+. +..
T Consensus 122 ~v~~~~--~~~~d~~~~~~~i~~------~T~lv~is~~~n~tG~~~~~~~---I~~~~~~~~~~~ivD~~~~~---g~~ 187 (391)
T d1p3wa_ 122 YLAPQR--NGIIDLKELEAAMRD------DTILVSIMHVNNEIGVVQDIAA---IGEMCRARGIIYHVDATQSV---GKL 187 (391)
T ss_dssp EECCCT--TSCCCHHHHHHHCCT------TEEEEECCSBCTTTCCBCCHHH---HHHHHHHHTCEEEEECTTTB---TTB
T ss_pred EeCCCC--CCeEcHHHHHHhCCC------CcEEEEEECCCCCCeeECCHHH---HHHHhccCCcEEEEeecccc---CCc
Confidence 999874 346889999999865 9999999999999999999655 88889999999999999973 221
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--------cccccCcHHHHHHHH
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--------SSFGLVSSQTQYLLS 313 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--------~~~~~~s~~~q~~~~ 313 (469)
+ ..+.. .+..+++.|..|.+|.+| +|+++..+..+....... ...+..+.....++.
T Consensus 188 ~-~d~~~------------~~~D~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~ 252 (391)
T d1p3wa_ 188 P-IDLSQ------------LKVDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMG 252 (391)
T ss_dssp C-CCTTT------------SCCSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHH
T ss_pred c-ccchh------------ccccccccccccccCCCc--eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhh
Confidence 1 22221 244567789999998676 566666444221110000 111223333333332
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcee---cCC-ceEEEEEecccccccCChhHHHHHHHHHHHhCCe
Q 043923 314 ALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCL---KSN-AGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKL 389 (469)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~---~~~-~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI 389 (469)
..+... .+......+++++.++.+.+.|.+.+.... .+. ....+.+..+.. ....+...+ .++
T Consensus 253 ~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l---~~i 319 (391)
T d1p3wa_ 253 EAYRIA---KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMAL---KDL 319 (391)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS-------CHHHHHHHT---TTE
T ss_pred hhhhHH---HHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC-------ChHHHHHHh---CCC
Confidence 222211 223344455666677777777776633222 111 112222333321 111233322 478
Q ss_pred EEeCCCCCCCCC-----------------CCeEEEEeecC-CHHHHHHHHHHHHHHHHhhcc
Q 043923 390 NISPGSSCHCTE-----------------PGWFRVCFANM-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 390 ~v~pg~~f~~~~-----------------~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++.|..+.... .+++|||++.. |++|++.++++|+++++++++
T Consensus 320 ~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 320 AVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp ECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888776553211 25799999864 899999999999999998877
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=9.6e-23 Score=201.09 Aligned_cols=295 Identities=11% Similarity=0.097 Sum_probs=208.2
Q ss_pred CCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 85 YHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 85 ~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
..-+.+|++.+|+|++ .+..++.+++.+|...++.++..++|.|++....|..+...++.. +.+++.++
T Consensus 82 ~~~~~~lE~~LA~~~g----------~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~-~~~~~~~~ 150 (383)
T d1bs0a_ 82 SVVHQALEEELAEWLG----------YSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFA 150 (383)
T ss_dssp CHHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEEC
T ss_pred chHHHHHHHHHHHhcC----------CCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccC-CCcceEec
Confidence 3446899999999985 567888888999999999999999999999999999888888776 89998887
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+ |++++++.+... .++..+|+++.+.+++|.+.+.++ |+++|++||+++++||+|+..+++... .
T Consensus 151 hn-------d~~~le~~l~~~---~~~~~~vv~e~v~s~~G~i~pl~~---l~~l~~~~~~~livDeah~~gv~G~~g-~ 216 (383)
T d1bs0a_ 151 HN-------DVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAPLAE---IQQVTQQHNGWLMVDDAHGTGVIGEQG-R 216 (383)
T ss_dssp TT-------CHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCCHHH---HHHHHHHTTCEEEEECTTTTTTSSGGG-C
T ss_pred ch-------HHHHHHHHhccc---CCCceEEEecCCCCCCCcccchhH---HHHHHHhcCcEEEeecceeeeecCCcc-c
Confidence 54 788888887642 335677888888999999999665 777888999999999999966554332 2
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-ccc--cc-CcHHHHHHHHHHhcCch
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSF--GL-VSSQTQYLLSALLSDKK 320 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~~--~~-~s~~~q~~~~~~l~~~~ 320 (469)
...+... ....+++.|++|++|.+| |++.++.. +.+.++.. ..+ .. .+++...++.+.+.-..
T Consensus 217 G~~~~~~---------~~~~~~~~t~~ka~g~~G---g~v~~~~~-~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~ 283 (383)
T d1bs0a_ 217 GSCWLQK---------VKPELLVVTFGKGFGVSG---AAVLCSST-VADYLLQFARHLIYSTSMPPAQAQALRASLAVIR 283 (383)
T ss_dssp CHHHHTT---------CCCSEEEEESSSTTSSCC---EEEEECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH
T ss_pred chHHHcC---------Cccccccccccccccccc---cccccchh-HHHHHHhhchhhhhcccccchHHHHHHHHHHHHH
Confidence 3333322 244556789999999887 89888554 44444433 222 21 23333233333322111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-C
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-C 399 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-~ 399 (469)
....+.+++++.++..++.+.|.+.|+.+.+..+ .++.+.++.. ....++.+.|+ ++||.+.+..+.. +
T Consensus 284 --~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s-~Ii~v~~g~~------~~a~~~~~~L~-~~Gi~v~~~~~PtVp 353 (383)
T d1bs0a_ 284 --SDEGDARREKLAALITRFRAGVQDLPFTLADSCS-AIQPLIVGDN------SRALQLAEKLR-QQGCWVTAIRPPTVP 353 (383)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCS-SBCCEEEESH------HHHHHHHHHHH-HTTEECCEECTTSSC
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHhcCCccCCCCC-CEEEEEECCH------HHHHHHHHHHH-HCCceEEEEcCCCCC
Confidence 1123566777888889999999999988766555 3433444321 22345566665 6699998765333 2
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 400 TEPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 400 ~~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
.+...+|++++. +++++|++++++|+.+
T Consensus 354 ~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 354 AGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp TTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 345579999987 5999999999998764
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.6e-22 Score=199.04 Aligned_cols=302 Identities=11% Similarity=0.067 Sum_probs=212.6
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
.-+.+|++.+|+|++ .+.+++++++++|...++.++.+++|.|++..-.|..+...+... +.++..++.
T Consensus 90 ~~~~~lE~~lA~~~g----------~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~-~a~~~~~~~ 158 (401)
T d1fc4a_ 90 DSHKELEQKLAAFLG----------MEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN 158 (401)
T ss_dssp HHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT
T ss_pred HHHHHHHHHHHHhhc----------CCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHcccccc-CceEEEEcC
Confidence 345789999999885 678899999999999999999999999999999999888888776 888887764
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
. |.++++..+......+....+|++..-.+..|...+ ++++.++|++||+++|+||+++...++... ..
T Consensus 159 ~-------d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G-~G 227 (401)
T d1fc4a_ 159 N-------DMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG-RG 227 (401)
T ss_dssp T-------CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CC
T ss_pred C-------ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCC-Cc
Confidence 3 677788877765554555566666655677888877 555888889999999999999976665433 22
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-ccc---ccCcHHHHHHHHHHhcCchh
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSF---GLVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~ 321 (469)
....... ..+..++++|+||++| |...|++.++ ..+.+.+... ..+ ...+++...++...++..
T Consensus 228 ~~~~~~~-------~~~~dii~~tl~Ka~g--g~~Gg~v~g~-~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~-- 295 (401)
T d1fc4a_ 228 SHEYCDV-------MGRVDIITGTLGKALG--GASGGYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV-- 295 (401)
T ss_dssp HHHHTTC-------TTCCSEEEEESSSTTC--SSSCEEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH--
T ss_pred cchhccC-------CCCCeEEEeecccccc--cCCcccccCC-HHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc--
Confidence 3333221 2356788999999994 3334888884 4454544332 222 123444444444444322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-CC
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-CT 400 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-~~ 400 (469)
...++.++++.++.+++.+.+...++.+..+++ ..+.+.+.+. ....++.++|+ ++||.+.+-.+.. +.
T Consensus 296 --~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~~-pIv~v~~~~~------~~a~~~~~~L~-~~Gi~v~~i~~PtVp~ 365 (401)
T d1fc4a_ 296 --EAGSELRDRLWANARQFREQMSAAGFTLAGADH-AIIPVMLGDA------VVAQKFARELQ-KEGIYVTGFFYPVVPK 365 (401)
T ss_dssp --HTCHHHHHHHHHHHHHHHHHHHHTTCCBCCSSS-SEEEEEEECH------HHHHHHHHHHH-HTTEECCEECTTSSCT
T ss_pred --ccCHHHHHHHHHHHHHHHhhhcccCCccCCCCC-CEEEEEECCH------HHHHHHHHHHH-HCCceEEeECCCCCCC
Confidence 123566788888889999999999988776665 4444444421 22335666665 6699988654322 23
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 401 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 401 ~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+...+|++++. +++++|++++++|+++.++.
T Consensus 366 g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 366 GQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 34579999976 69999999999999998875
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.90 E-value=1.8e-22 Score=198.56 Aligned_cols=297 Identities=12% Similarity=0.048 Sum_probs=206.2
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh--cCCCCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL--AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
-+.+|++.+|+|++ .+..++.+++..|...++.++ ..++|.|+...-.|......++.. +++++.++
T Consensus 91 ~h~~LE~~lA~~~g----------~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls-~a~~~~f~ 159 (396)
T d2bwna1 91 YHRRLEAEIAGLHQ----------KEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AGPKRIFR 159 (396)
T ss_dssp HHHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CCCEEEEC
T ss_pred HHHHHHHHHHHHhC----------CCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhcc-ccCceEee
Confidence 45789999999985 566777777788888888877 468899998998888888888877 99998887
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+ |.+.++..++.. ...+.++|++..-.+.+|.+.|.++ |+++|++||+++++||+|+-.+++... .
T Consensus 160 Hn-------d~~~l~~l~~~~--~~~~~~~iv~egvySmdGd~apl~~---l~~L~~~y~~~L~vDeAHs~Gv~G~~G-~ 226 (396)
T d2bwna1 160 HN-------DVAHLRELIAAD--DPAAPKLIAFESVYSMDGDFGPIKE---ICDIAEEFGALTYIDEVHAVGMYGPRG-A 226 (396)
T ss_dssp TT-------CHHHHHHHHHHS--CTTSCEEEEEESBCTTTCCBCCHHH---HHHHHHHHTCEEEEECTTTTTTSSTTS-C
T ss_pred cc-------hHHHhhhHHhhh--cccCceeEEEEeeccCcccccccHh---HHHHhhhhcceeeeccceeeeeecccc-c
Confidence 54 667777766532 1224556666666788999999555 788888999999999999966655433 2
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-cc--ccc-CcHHHHHHHHHHhcCch
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SS--FGL-VSSQTQYLLSALLSDKK 320 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~-~~--~~~-~s~~~q~~~~~~l~~~~ 320 (469)
.+.....- ..+..++++||||+||..| |++.++ +.+.+.+... .+ +.+ .+++...++.+.+.-..
T Consensus 227 G~~~~~~~-------~~~~di~~gTlsKa~g~~G---g~v~~~-~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~ 295 (396)
T d2bwna1 227 GVAERDGL-------MHRIDIFNGTLAKAYGVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK 295 (396)
T ss_dssp CHHHHHTC-------GGGCSEEEEESSSTTCSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT
T ss_pred cchhhcCC-------ceeeeeeeecccccccccc---cccchh-HHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhh
Confidence 33332211 2356788999999999888 998885 4455554433 22 222 23333333333322111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCC-C
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCH-C 399 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~-~ 399 (469)
.....+.+..+..+.+++.+.+...|+.+.+.++ ..+.+.+... ....++++++|+++||.+.+..+.. +
T Consensus 296 --~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~s-pIvpv~ig~~------~~~~~~a~~lL~e~Gi~v~~i~~PtVp 366 (396)
T d2bwna1 296 --TAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGS-HIVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVP 366 (396)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSS-SCEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSC
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC-CEEEEEeCCH------HHHHHHHHHHHHhCCEEEEEECCCcCC
Confidence 1123456677777888899999999988765544 5555555432 3344677788888899998765443 2
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 400 TEPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 400 ~~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
.+...+|++++. +++++|++++++|+++
T Consensus 367 ~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 367 RGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 345679999977 5999999999999985
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=4.1e-24 Score=206.56 Aligned_cols=335 Identities=10% Similarity=0.091 Sum_probs=210.5
Q ss_pred eeeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCC
Q 043923 40 IIQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAG 119 (469)
Q Consensus 40 ~i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G 119 (469)
+|||....-..|.|.+.+++.+.. .....|++.+...+|++.+|++++ .+++++++|
T Consensus 1 ~~~~~~~~~t~p~p~v~~A~~~a~-------------~g~~~yg~~p~~~~le~~lA~~~G----------~~~~~~~~s 57 (343)
T d1m6sa_ 1 MIDLRSDTVTKPTEEMRKAMAQAE-------------VGDDVYGEDPTINELERLAAETFG----------KEAALFVPS 57 (343)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCC-------------CCCGGGTCCHHHHHHHHHHHHHTT----------CSEEEEESC
T ss_pred CcccccccCCCCCHHHHHHHHhhh-------------cCCcccCCCHHHHHHHHHHHHHHC----------CCeEEEeCC
Confidence 588877665566677788876641 122357776778999999999885 457889999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEccCCCcChHH---HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 043923 120 ATSANETLMFCLAEPGEAFLLPTPYYPGFDR---DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVL 196 (469)
Q Consensus 120 ~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vv 196 (469)
+++|+..++.++..+||.+++..+.+..+.. ..... +..+..++.+ .+..|++.++..+.......+++..++
T Consensus 58 Gt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ 133 (343)
T d1m6sa_ 58 GTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLS-GVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIA 133 (343)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHT-CCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHHHHHHHHHHHhccCCceeccccccceeeecccccccc-cceeeccccc---cCccCHHHHHHhhhhhhcccccccccc
Confidence 9999999999999999999999998754432 22233 5666666644 335688888888765333334555554
Q ss_pred -EecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccC
Q 043923 197 -VTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG 275 (469)
Q Consensus 197 -l~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 275 (469)
.+.++|++|.+++.+++++|.++|++|++++++|++|..+...... ........ .....+.+ |..+
T Consensus 134 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~-~~~~~~~~----------~~~~~~~~--~~~~ 200 (343)
T d1m6sa_ 134 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG-VPVKEYAG----------YADSVMFC--LSKG 200 (343)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC-CCHHHHHH----------TCSEEEEE--SSST
T ss_pred cccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccc-cchhhhcc----------cccccccc--cccc
Confidence 4456889999999999999999999999999999999864332211 12222211 22223233 3334
Q ss_pred CCcceEEEEEecCHHHHHHHHHhccc-ccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-Cceec
Q 043923 276 LPGFRVGAIYSNDDMVVAAATKMSSF-GLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-ISCLK 353 (469)
Q Consensus 276 ~~GlRiG~li~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~~v~~ 353 (469)
..|.+.|+++.....+.......... ...+.....++......... ....+...++...+.+.+.+++ .....
T Consensus 201 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (343)
T d1m6sa_ 201 LCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM-----VDRLKEDHENARFLALKLKEIGYSVNPE 275 (343)
T ss_dssp TCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS-----STTHHHHHHHHHHHHHHHHHHTCBCCGG
T ss_pred ccccccccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhh-----HHHHHHHHHHHHHhhhHHHHhccCccCC
Confidence 45666788887554443322222211 11222222222211111110 1112223334444555555543 33333
Q ss_pred CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 354 SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 354 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+..++++|++++... ....++++.|+ ++||.+.|. +++++|++++. +++|+|++++++|+++++++
T Consensus 276 ~~~~~~v~~~~~~~~-----~~a~~l~~~L~-~~Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 276 DVKTNMVILRTDNLK-----VNAHGFIEALR-NSGVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp GCCSSEEEEECTTSS-----SCHHHHHHHHH-HHTEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeCCCc-----ccHHHHHHHHH-HCCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 445578999887421 12235667765 559999874 25689999976 58999999999999999875
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.86 E-value=1.8e-19 Score=181.24 Aligned_cols=326 Identities=14% Similarity=0.123 Sum_probs=215.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCE
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVE 159 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~ 159 (469)
..|...+...+|++.+|++++ .+.+++++++++|+.+++.+++++||.|+.....+. ....+... |..
T Consensus 69 d~Y~~dpt~~~lE~~~a~l~G----------~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~-~~~~i~~~-g~~ 136 (456)
T d1c7ga_ 69 EAYAGSENFYHLEKTVKELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TRFHQEKN-GAT 136 (456)
T ss_dssp CCSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCHH-HHHHHHHT-TEE
T ss_pred hhccCCchHHHHHHHHHHHhC----------CCeEEECCCHHHHHHHHHHHhcCCCCeEecCcchHH-HHHHHHHc-Cce
Confidence 358888888999999999986 667899999999999999999999999887665333 33334445 888
Q ss_pred EEEeeccC--------CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEe
Q 043923 160 IVPIQCTS--------LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTMSRNELNLLVNIITEKNIHLISD 230 (469)
Q Consensus 160 ~~~v~~~~--------~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~~~~~iI~D 230 (469)
.+.+..+. ...+.+|++.+++.|++... ..+.++++.+|+|+. |.+++.++++++.++|++||+.+++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~--~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D 214 (456)
T d1c7ga_ 137 FVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYD 214 (456)
T ss_dssp EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred eeeccccccccccccCCccccCCHHHHHHHhhhcCC--ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEE
Confidence 87765421 23457899999999986422 266788999999976 68899999999999999999999999
Q ss_pred cccccc--cc-----CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc----
Q 043923 231 EIYSGT--VF-----SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---- 299 (469)
Q Consensus 231 eay~~~--~~-----~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~---- 299 (469)
+++... ++ .+....++.++..++ .....++..|++|.++.++ -|+++.+++.+.+..+...
T Consensus 215 ~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~------~~~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~ 286 (456)
T d1c7ga_ 215 ATRCVENAYFIKEQEAGYENVSIKDIVHEM------FSYADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYE 286 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTTSCHHHHHHHH------HTTCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHT
T ss_pred cchhhcchhhhcccccccCCCChhhhcccc------ccccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccC
Confidence 997421 01 011112343333221 0122355569999997543 3788887776655443321
Q ss_pred ---ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccc---cCCh
Q 043923 300 ---SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLR---SNTF 373 (469)
Q Consensus 300 ---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~---~~~~ 373 (469)
..+..+.....+++..+..... .++++ +-.++.++|.+.|.+.|+.+..+.++..++++...... ...
T Consensus 287 g~~~~g~~~~~~~~a~a~~l~e~~~-~~~l~----~r~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~- 360 (456)
T d1c7ga_ 287 GMPSYGGLAGRDMEAMAIGLREAMQ-YEYIE----HRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQ- 360 (456)
T ss_dssp CCTTTTTCCHHHHHHHHHHHHHHTC-HHHHH----HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGG-
T ss_pred CCcccchhhHHHHHHHHHHHHHhcC-HHHHH----HHHHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCccc-
Confidence 1222333333333322222111 22222 22334578889999999999888888888887553221 111
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCCC--C--C-------CCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhcc
Q 043923 374 EAEMELWKKIVYDVKLNISPGSSC--H--C-------TEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~f--~--~-------~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.....+...++.+.||...+...+ + + ...+.+|+++.. .|+++|+..+++|+++.++...
T Consensus 361 ~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~ 433 (456)
T d1c7ga_ 361 FPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp CHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGG
T ss_pred ccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhh
Confidence 233456677777889976432110 0 0 113469999974 3899999999999998876554
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.1e-19 Score=180.66 Aligned_cols=296 Identities=14% Similarity=0.145 Sum_probs=201.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHH----hcCCCCEEEEccCCCcChHHHH----hhhCCCE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFC----LAEPGEAFLLPTPYYPGFDRDL----KWRTGVE 159 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~----l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~ 159 (469)
..+.|+.+|++++. .++++|++++|+|+++..++.+ ...+||.|++..-.|+.....+ +.. |++
T Consensus 68 ~e~~R~~ia~~l~~-------~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~-g~~ 139 (405)
T d1jf9a_ 68 MENVRKRASLFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-GAE 139 (405)
T ss_dssp HHHHHHHHHHHTTC-------SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-TCE
T ss_pred HHHHHHHHHHHcCC-------CCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHc-CcE
Confidence 45678888888861 2468999999999999988776 3588999999999998855433 445 999
Q ss_pred EEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccC
Q 043923 160 IVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFS 239 (469)
Q Consensus 160 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~ 239 (469)
+..+|++.++ .+|++.++.++++ ++++|+++..+|.||..+|.++ |.++|+++|+++++|.+++ .+
T Consensus 140 v~~~~~~~~g--~~~~~~~~~~i~~------~t~lv~~~~v~~~tG~~~pi~~---i~~~~~~~g~~~~vD~~q~---~g 205 (405)
T d1jf9a_ 140 LRVIPLNPDG--TLQLETLPTLFDE------KTRLLAITHVSNVLGTENPLAE---MITLAHQHGAKVLVDGAQA---VM 205 (405)
T ss_dssp EEEECBCTTS--CBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCCHHH---HHHHHHHTTCEEEEECTTT---TT
T ss_pred EEEECCCCCC--cCCHHHHHHhccC------CcEEEEEecCCCcccccCchHH---hhhHHHHcCCeeeccccee---cc
Confidence 9999998644 5788888887765 9999999999999999999655 8888999999999999987 22
Q ss_pred CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh---------------------
Q 043923 240 SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--------------------- 298 (469)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--------------------- 298 (469)
.. ...+..+ +..+++.|+.|++|.+| +|+++.++..+.. ....
T Consensus 206 ~~-~id~~~~------------~~D~~~~s~hK~~Gp~G--~g~l~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (405)
T d1jf9a_ 206 HH-PVDVQAL------------DCDFYVFSGHKLYGPTG--IGILYVKEALLQE-MPPWEGGGSMIATVSLSEGTTWTKA 269 (405)
T ss_dssp TS-CCCHHHH------------TCSEEEEEGGGTTSCSS--CEEEEECHHHHTT-CCCSSCSSSSEEECCTTTCCEECCT
T ss_pred cc-ccchhhc------------CCceeeccccccccCCC--ceeeeechhhhcc-cCcccccccccCccccccccccccc
Confidence 22 2343333 45688889999988665 7888885443221 1100
Q ss_pred ---cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceecC-CceEEEEEecccccccCCh
Q 043923 299 ---SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI-SCLKS-NAGLFCWVDMRHLLRSNTF 373 (469)
Q Consensus 299 ---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~-~v~~~-~~g~~~~v~~~~~~~~~~~ 373 (469)
-..++.+..+..++..+++-.. +-..+...++.....+.+.+.++..+. ....+ ..+..+.+.++...
T Consensus 270 ~~r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~----- 342 (405)
T d1jf9a_ 270 PWRFEAGTPNTGGIIGLGAALEYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH----- 342 (405)
T ss_dssp TGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCC-----
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCCC-----
Confidence 0013345555555555443211 111334444445555666777776643 33332 22234556665321
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCCCCC------CCCCeEEEEeecC-CHHHHHHHHHHHHHHHHhh
Q 043923 374 EAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANM-SEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~f~~------~~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~ 431 (469)
..+ ....|.++||.++.|+.+.. ..++.+|+|++.. +++|+++++++|+++.+-+
T Consensus 343 --~~~-~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 343 --AYD-VGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp --HHH-HHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHH-HHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 112 33455788999998876642 2367899999874 8999999999999988753
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=1.8e-20 Score=178.76 Aligned_cols=327 Identities=16% Similarity=0.126 Sum_probs=198.7
Q ss_pred cccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHH
Q 043923 46 AENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSAN 124 (469)
Q Consensus 46 ~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al 124 (469)
|+|+.+ +|.+.+++.+... .....|++....+++|+.+|++++ .++++|++|+|+++++
T Consensus 6 nd~~~g~~P~v~eAl~~~~~------------~~~~~y~~~~~~~~lr~~ia~~~g--------~~~~~v~~tsggtean 65 (340)
T d1svva_ 6 NDYSVGMHPKILDLMARDNM------------TQHAGYGQDSHCAKAARLIGELLE--------RPDADVHFISGGTQTN 65 (340)
T ss_dssp CSCSSCCCHHHHHHHHHHTT------------CCCCSTTCSHHHHHHHHHHHHHHT--------CTTSEEEEESCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhh------------cCCCCCCCCHHHHHHHHHHHHHhC--------CCcceEEEcCCHHHHH
Confidence 577764 4667777665211 223457766677889999999996 5678999999999999
Q ss_pred HHHHHHhcCCCCEEEEccCCCcChHHHHhhh-CCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCC
Q 043923 125 ETLMFCLAEPGEAFLLPTPYYPGFDRDLKWR-TGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNP 203 (469)
Q Consensus 125 ~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NP 203 (469)
..++..+..+++.+++..+.+..+....... .+.....+.... ...+.+..................++++.+.|+
T Consensus 66 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (340)
T d1svva_ 66 LIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPD---GKLRVADIESALHENRSEHMVIPKLVYISNTTE 142 (340)
T ss_dssp HHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTT---SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCT
T ss_pred HHHHHHHhhhccccccccccceeeeecccccccceeeeeccccc---ccccchhHHHHhhhhhcccCCcceeeeeccccc
Confidence 9999999999999999988876553322211 133333333221 123334444433321111223344555555566
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC-ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEE
Q 043923 204 LGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVG 282 (469)
Q Consensus 204 tG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG 282 (469)
+|.+.+.+++..+...|.+++.++++|++|......... ......... ...+...+.+|.. .+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--~~~~~~ 210 (340)
T d1svva_ 143 VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIAR----------LTDMFYIGATKAG--GMFGEA 210 (340)
T ss_dssp TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHH----------HCSEEEEECTTTT--CSSCEE
T ss_pred ccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccc----------cceeeecCCcccc--cccccc
Confidence 788889999999999999999999999999754333222 122222211 2334444455544 344455
Q ss_pred EEEecCHHHHHHH--HHhcccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE
Q 043923 283 AIYSNDDMVVAAA--TKMSSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 359 (469)
Q Consensus 283 ~li~~~~~~~~~~--~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~ 359 (469)
+............ ....... ........++...+....+ ....+....++.++...|+..|+++..|..+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~ 285 (340)
T d1svva_ 211 LIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLF-----FELGAHSNKMAAILKAGLEACGIRLAWPSASNQ 285 (340)
T ss_dssp EEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSE
T ss_pred ccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHH-----HHHHHHHHHHHhhhHHHHhcCCCeeecCCCceE
Confidence 5554332221111 1111122 1233444455555555443 334556667778889999999999876666688
Q ss_pred EEEecccccccCChhHHHHHHHHHHHhCCe-EEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 360 CWVDMRHLLRSNTFEAEMELWKKIVYDVKL-NISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 360 ~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI-~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
+++.+++ +...+++++ ++ ...+.. ..+++++|++++. .++++|++++++|+++
T Consensus 286 v~~~~~~-----------~~~~~l~~~-~~~~~~~~~---~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 286 LFPILEN-----------TMIAELNND-FDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp ECBEEEH-----------HHHHHHTTT-EECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred EEEeCCH-----------HHHHHHHHh-hhhhccccc---CCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 8888764 234455544 33 222221 1246789999875 5999999999999863
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=9.7e-20 Score=179.24 Aligned_cols=296 Identities=13% Similarity=0.157 Sum_probs=187.5
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHH----hcCCCCEEEEccCCCcChHHHH---hhhCCCEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFC----LAEPGEAFLLPTPYYPGFDRDL---KWRTGVEI 160 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~----l~~~gd~Vl~~~P~y~~~~~~~---~~~~g~~~ 160 (469)
+.+.|+++|++++ +++++|++++|+|+++..++.. ...+|+.|++....|+.+.... +.. |+++
T Consensus 46 ~~~aR~~ia~l~~--------~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-g~~v 116 (376)
T d1eg5a_ 46 MEKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKV 116 (376)
T ss_dssp HHHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT-TCEE
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhc-CCEE
Confidence 3456888999986 7899999999999999998764 3577888888888887765443 444 9999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+.+|+++ ++.+|++++++++++ ++++|++++++|+||..++.+++.++++ |...++++++|.++. ++.
T Consensus 117 ~~vp~~~--~~~id~~~l~~~i~~------~t~lv~is~v~~~tG~~~~~~~i~~~~~-~~~~~~~~~vD~~q~---~g~ 184 (376)
T d1eg5a_ 117 KYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQPVEDVTRIVK-KKNKETLVHVDAVQT---IGK 184 (376)
T ss_dssp EECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHH-HHCTTCEEEEECTTT---TTT
T ss_pred EEEcCCC--CCeECHHHHHHhcCC------CceEEEEECCccccceeeeehhhhhhhh-hcccCceeEEEeeec---ccc
Confidence 9999885 456899999999875 9999999999999999999888555443 234489999999986 332
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH---Hhc--ccccCcHHHHHHHHHH
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---KMS--SFGLVSSQTQYLLSAL 315 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~---~~~--~~~~~s~~~q~~~~~~ 315 (469)
.+ ..+. ..+..++++|++|++|.+|.++.|+.- +..+..... ... ..+..+......+...
T Consensus 185 ~~-~d~~------------~~~~D~~~~s~~K~~gp~G~~~l~~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T d1eg5a_ 185 IP-FSLE------------KLEVDYASFSAHKFHGPKGVGITYIRK-GVPIRPLIHGGGQERGLRSGTQNVPGIVGAARA 250 (376)
T ss_dssp SC-CCCT------------TTCCSEEEEEGGGGTSCTTCEEEEECT-TSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHH
T ss_pred cc-cccc------------ccCccceecccceeecCCCceeEEecc-CcccCCcccCCCCcccccCCcccchhhhhHHHH
Confidence 21 2222 225668899999999988877776532 111100000 000 0111233333333222
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS 392 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~---g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~ 392 (469)
.... ...............+++.+.|............ ...+.+.++.. +. +.....|.++||.++
T Consensus 251 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~L~~~gI~vr 319 (376)
T d1eg5a_ 251 MEIA---VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-------RG-STLQNLLSGYGIYVS 319 (376)
T ss_dssp HHHH---HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-------CH-HHHHHHHHHTTEECB
T ss_pred hhcc---ccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCC-------CH-HHHHHHHhhCCeEEe
Confidence 2211 1112233344455556677777765433332211 11223334321 11 233445678899999
Q ss_pred CCCCCCCCC-----------------CCeEEEEeecC-CHHHHHHHHHHHHHHHH
Q 043923 393 PGSSCHCTE-----------------PGWFRVCFANM-SEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 393 pg~~f~~~~-----------------~~~iRi~~~~~-~~e~i~~~l~~L~~~l~ 429 (469)
+|..+.... ++++|+|++.. +++|+++++++|++++.
T Consensus 320 ~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 320 TSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp C------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 887654321 24699999864 89999999999999986
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=8.2e-20 Score=175.67 Aligned_cols=331 Identities=10% Similarity=0.083 Sum_probs=203.5
Q ss_pred eeeeeccccccC-hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeC
Q 043923 40 IIQMGLAENQLS-FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTA 118 (469)
Q Consensus 40 ~i~L~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~ 118 (469)
.++|+. +|..+ .|.+.+++.+... .....|.......++|+.+|++++ .+..+++|+
T Consensus 4 ~~~f~s-~n~~g~~P~v~~A~~~a~~------------~~~~~~~~~~~~~~l~~~la~~~g---------~~~~v~f~~ 61 (345)
T d1v72a1 4 ALGFSS-DNIAGASPEVAQALVKHSS------------GQAGPYGTDELTAQVKRKFCEIFE---------RDVEVFLVP 61 (345)
T ss_dssp CCBCSC-GGGCCCCHHHHHHHHHTTS------------SCCCSTTCSHHHHHHHHHHHHHHT---------SCCEEEEES
T ss_pred CcCcCC-CCCCCCCHHHHHHHHHHhc------------cCccccCCCHHHHHHHHHHHHHHC---------CCcEEEECC
Confidence 467774 55554 4667777776421 223456656677889999999986 245799999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH---HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCcee-E
Q 043923 119 GATSANETLMFCLAEPGEAFLLPTPYYPGFDRD---LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVK-G 194 (469)
Q Consensus 119 G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~-~ 194 (469)
|+++|+..++..++.+++.+++....+..+... .... +..+..++.+ .+...+++.++..+.+.......+. .
T Consensus 62 sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~ 138 (345)
T d1v72a1 62 TGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFS-NGAKLMTVDG--PAAKLDIVRLRERTREKVGDVHTTQPA 138 (345)
T ss_dssp CHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHT-TSCEEEECCC--GGGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred chHHHHHHHHHHHHhcCCccccccccceeeechhhHHHhc-Cccccccccc--ccccccHHHhhhhhcccccccccccce
Confidence 999999999999999988888777665443322 2223 6666665543 3445788999888764222111233 4
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcccc
Q 043923 195 VLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDL 274 (469)
Q Consensus 195 vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 274 (469)
++.+++.|++|...+.++++++.++|++||+++++|+++....+.... .+...... .........+..|..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~ 209 (345)
T d1v72a1 139 CVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLG-CSPAEMTW--------KAGVDALSFGATKNG 209 (345)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT-CCTTTTTG--------GGTCCEEEECCGGGT
T ss_pred eeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccc-cCHHHhhc--------cccccccccCccccc
Confidence 466677889999999999999999999999999999999754322111 11111100 113334444455544
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhc--cccc-CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Q 043923 275 GLPGFRVGAIYSNDDMVVAAATKMS--SFGL-VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GIS 350 (469)
Q Consensus 275 g~~GlRiG~li~~~~~~~~~~~~~~--~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~ 350 (469)
+ .+.+.+ +............... .... .......+....+.+.. ..+......++...+.+.+.++ ++.
T Consensus 210 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~g~~ 282 (345)
T d1v72a1 210 V-LAAEAI-VLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDL-----WLRNARKANAAAQRLAQGLEGLGGVE 282 (345)
T ss_dssp C-SSCEEE-EESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred c-cccccc-ccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhh-----hhhhccchhhHHHHHHHHHHhcCCcE
Confidence 3 222222 2222222222222111 1111 22222223333343332 2333444455556777778777 777
Q ss_pred eecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 043923 351 CLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 427 (469)
Q Consensus 351 v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~ 427 (469)
+..+..+++++++++. +.++.|+ +.||.|.++. .+++.+|++++. .|+|+|+.++++|+++
T Consensus 283 ~~~p~~~niv~~~~~~-----------~~~~~L~-~~gi~v~~~~----~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 283 VLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR----WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp EESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS----SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred eccCCCccEEEEEcCH-----------HHHHHHH-HcCCCccccC----CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7777777899998863 3455665 5599886543 246799999976 4899999999999874
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.82 E-value=5.4e-18 Score=168.49 Aligned_cols=294 Identities=16% Similarity=0.164 Sum_probs=200.5
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCChHHHHHHHHHH----hcCCCCEEEEccCCCcChHHH----HhhhCCC
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLMFC----LAEPGEAFLLPTPYYPGFDRD----LKWRTGV 158 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G~~~al~~~~~~----l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~ 158 (469)
+++.|+.+|++++ ++ ++.|++++++++++.+++.. -.++||.|++.+-.|+..... ++.. |.
T Consensus 68 ~e~aR~~ia~llg--------a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~-g~ 138 (408)
T d1t3ia_ 68 YEAVRNKVAKFIN--------ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GA 138 (408)
T ss_dssp HHHHHHHHHHHTT--------CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CC
T ss_pred HHHHHHHHHHHhC--------CCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhcc-Cc
Confidence 3467888888876 44 57899999999999988766 357899999999888876543 3445 99
Q ss_pred EEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccccccc
Q 043923 159 EIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVF 238 (469)
Q Consensus 159 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~ 238 (469)
++..+|.+..+ ..+.+.++..+++ ++++|+++.-+|-||..++.++ +.++|+++|+++++|.+++ .
T Consensus 139 ~v~~~~~~~~~--~~~~~~l~~~~~~------~t~lv~i~~~~~~tG~~~p~~~---i~~~~~~~g~~~ivDa~q~---~ 204 (408)
T d1t3ia_ 139 VLKFVQLDEQE--SFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNPAEE---IAQLAHQAGAKVLVDACQS---A 204 (408)
T ss_dssp EEEEECBCTTS--SBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHH---HHHHHHHTTCEEEEECTTT---T
T ss_pred eEeeeeccccc--cccHHHhhhccCC------CceEEEEecccccccccCcHHH---HhhhhhccCceeeecccee---c
Confidence 99999877433 4678888887754 8999999999999999999655 7888999999999999997 3
Q ss_pred CCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-------------------
Q 043923 239 SSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS------------------- 299 (469)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~------------------- 299 (469)
+..+ ..+..+ +..+++.|..|++|-+| +|+++..+... .......
T Consensus 205 g~~~-id~~~~------------~~D~~~~s~hK~~gp~G--~g~l~v~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~ 268 (408)
T d1t3ia_ 205 PHYP-LDVQLI------------DCDWLVASGHKMCAPTG--IGFLYGKEEIL-EAMPPFFGGGEMIAEVFFDHFTTGEL 268 (408)
T ss_dssp TTSC-CCHHHH------------TCSEEEEEGGGTTSCTT--CEEEEECHHHH-HHSCCCSCSTTSEEEECSSCEEECCT
T ss_pred cccc-cccccc------------CCceEEeccccccCCCC--ccccccchhhh-hcCCceecCCcccccccccccccCCc
Confidence 3322 344333 45678889999876444 78888855433 2211000
Q ss_pred ----ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC-----CceEEEEEecccccc
Q 043923 300 ----SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS-----NAGLFCWVDMRHLLR 369 (469)
Q Consensus 300 ----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~-----~~g~~~~v~~~~~~~ 369 (469)
..++.+.+...++..+++-.. .--.++..++..+..+++.+.+.+. ++.+..+ ..+..+.+.++...
T Consensus 269 ~~r~e~Gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~- 345 (408)
T d1t3ia_ 269 PHKFEAGTPAIAEAIALGAAVDYLT--DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLH- 345 (408)
T ss_dssp TGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBC-
T ss_pred hhhhcCCcHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCC-
Confidence 023345555554444443111 1113444555566667777777776 4444422 22335556655321
Q ss_pred cCChhHHHHHHHHHHHhCCeEEeCCCCCCC------CCCCeEEEEeecC-CHHHHHHHHHHHHHHHHh
Q 043923 370 SNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANM-SEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 370 ~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~------~~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~ 430 (469)
..++. ..|.++||.++.|..|.. ..++.+|||++.. +++|++++++.|+++++.
T Consensus 346 ------~~~v~-~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 346 ------ASDVA-TMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp ------HHHHH-HHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHH-HHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 11333 445688999998887642 2367899999874 899999999999999875
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.2e-18 Score=172.04 Aligned_cols=300 Identities=13% Similarity=0.125 Sum_probs=197.9
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH--HhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD--LKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~--~~~~~g~~~~~v~ 164 (469)
+.+.++.++++++ ++. ..|+++.|+|+++..++..++.+|+.+++....+...... +... +..++.+.
T Consensus 54 ~~ea~~~l~~llg--------~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 124 (388)
T d1h0ca_ 54 MDEIKEGIQYVFQ--------TRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERI-GARVHPMT 124 (388)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHH-C--CBCCB
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccccc-cccccccc
Confidence 4555666666664 433 3688999999999999999999999999998877654322 2333 66666666
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+. +..+|.+.++..+... +++++++++.+|.||...+.++ +.++|++||+++++|.+++ ++..+ .
T Consensus 125 ~~~--~~~~~~~~~~~~~~~~-----~~~~v~~~~~~n~tG~i~pi~~---i~~~~~~~g~~~~vD~~qs---~g~~~-~ 190 (388)
T d1h0ca_ 125 KDP--GGHYTLQEVEEGLAQH-----KPVLLFLTHGESSTGVLQPLDG---FGELCHRYKCLLLVDSVAS---LGGTP-L 190 (388)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTT---HHHHHHTTTCEEEEECTTT---TTTSC-C
T ss_pred cCC--ccccchHHHHHHhccC-----CcceEEEeeeeeccccccCHHH---HHHHhhcccccceeccccc---ccccc-c
Confidence 553 3357778887777653 8899999999999999999665 8888999999999999987 33221 2
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHH----------------Hh-------c-c
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT----------------KM-------S-S 300 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~----------------~~-------~-~ 300 (469)
.+. ..+..+++.|..|.++.+ -.+|+++..+..+..... .. . .
T Consensus 191 d~~------------~~~~D~~~~s~~K~~~gp-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (388)
T d1h0ca_ 191 YMD------------RQGIDILYSGSQKALNAP-PGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMY 257 (388)
T ss_dssp CTT------------TTTCSEEEEESSSTTCCC-TTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCC
T ss_pred ccc------------ccccceecccccccccCC-CceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccc
Confidence 222 225567788999999634 356777774443322111 00 0 0
Q ss_pred cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecccccccCChhHH
Q 043923 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 301 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~----~g~~~~v~~~~~~~~~~~~~~ 376 (469)
.++.+.....++..++.... +.-++...++..+..+++++.+...|+....++ ....+.+.+|+..+ .
T Consensus 258 ~~t~~~~~~~~~~~al~~~~--~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~------~ 329 (388)
T d1h0ca_ 258 HHTIPVISLYSLRESLALIA--EQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYD------W 329 (388)
T ss_dssp CSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------H
T ss_pred cccccHHHHHHHHHHHHHHH--HhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCC------H
Confidence 11233333333333322110 112455566667777888888888776544322 22345677765332 2
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEE-eec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVC-FAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~-~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.++...|++++||.+..|... ...+.|||+ ++. .+.+++++++++|++++++.+|
T Consensus 330 ~~~~~~L~~~~gI~v~~G~~~--~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 330 RDIVSYVIDHFDIEIMGGLGP--STGKVLRIGLLGCNATRENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp HHHHHHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCEEEeCCchh--hcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 357788888889999988532 345689999 654 5899999999999999999988
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.78 E-value=6.4e-18 Score=170.91 Aligned_cols=328 Identities=14% Similarity=0.118 Sum_probs=203.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC-------EEEEccCCCcChHHHH
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGE-------AFLLPTPYYPGFDRDL 152 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd-------~Vl~~~P~y~~~~~~~ 152 (469)
..|....+..+|+++++++++ .+.+++++++++|...++.+++++|+ .++...+.+..+....
T Consensus 69 ~~y~~~~~~~~le~~~a~l~g----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~ 138 (465)
T d1ax4a_ 69 EAYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV 138 (465)
T ss_dssp CCSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHC----------CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHH
Confidence 358877788899999999985 57899999999999999999876543 3455555555444445
Q ss_pred hhhCCCEEEEeecc--------CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCCCHHHHHHHHHHHHhc
Q 043923 153 KWRTGVEIVPIQCT--------SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTMSRNELNLLVNIITEK 223 (469)
Q Consensus 153 ~~~~g~~~~~v~~~--------~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~~~ 223 (469)
... |...+.++.. ....+.+|+++++++|++... ..+..+++..++|.. |.++|.++++++.++|++|
T Consensus 139 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~ 215 (465)
T d1ax4a_ 139 ELN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 215 (465)
T ss_dssp HHT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred HHc-CCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhcc--ccccceeeccccccCceecCCHHHHHHHHHHHHHc
Confidence 555 8888776432 123467899999999986421 245666666666655 4678999999999999999
Q ss_pred CeEEEEecccccccc--C-----CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH-HHHH
Q 043923 224 NIHLISDEIYSGTVF--S-----SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV-VAAA 295 (469)
Q Consensus 224 ~~~iI~Deay~~~~~--~-----~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~-~~~~ 295 (469)
|+++|+|+++..... . +....+.....++. ..-..++..|.+|.. .+.+.|+++.++... ....
T Consensus 216 g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~d~~s~s~~k~~--~~~~~g~l~~~~~~~~~~~~ 287 (465)
T d1ax4a_ 216 GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM------YKYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLA 287 (465)
T ss_dssp TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH------GGGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHH
T ss_pred CCEEEEECcchhhhhcccccccccccccchhhhcccc------ccccceeEeecccCc--ccccceeEeecchHHHHHhh
Confidence 999999999863211 0 00111222222211 001234444556654 566678988865432 2211
Q ss_pred HH----hc---ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccc
Q 043923 296 TK----MS---SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 368 (469)
Q Consensus 296 ~~----~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~ 368 (469)
.. .. .+...+.....++...+..... . ...++..++.++|.+.|++.++++.++.+++++.++.....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~-~----~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~ 362 (465)
T d1ax4a_ 288 RQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-E----EYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLV 362 (465)
T ss_dssp HHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-H----HHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTC
T ss_pred hccccccccCCCcchhhHHHHHHHhhhhHHhhh-H----HHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhc
Confidence 11 11 1122333333333333322111 2 22233344567899999999999888888888877765432
Q ss_pred cc--CChhHHHHHHHHHHHhCCeEEeCCCCC--------C---CCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhcc
Q 043923 369 RS--NTFEAEMELWKKIVYDVKLNISPGSSC--------H---CTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 369 ~~--~~~~~~~~l~~~ll~~~GI~v~pg~~f--------~---~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.. ............++.+.||...+.... + ....+.+|+++.. .|+|+++.++++|++++++.++
T Consensus 363 ~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~ 442 (465)
T d1ax4a_ 363 PQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFAT 442 (465)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred CCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 111223445667777889876432110 0 1124579998743 3899999999999999887655
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=1.3e-16 Score=154.98 Aligned_cols=210 Identities=16% Similarity=0.167 Sum_probs=160.3
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
....|++.||+..+ .+..++++++..|+..++.+++++||.|++....|.+....+ +.. |+++..
T Consensus 60 T~~~LE~~la~LEg----------~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~-Gi~~~~ 128 (392)
T d1gc0a_ 60 TLNLLEARMASLEG----------GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLRH 128 (392)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGG-TCEEEE
T ss_pred HHHHHHHHHHHHhC----------CcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccC-Cccccc
Confidence 35778888888764 567788999999999999999999999999999999876554 334 898888
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.. |++.+++++++ ++++|++.+|.|||..+.+ +++++++|+++|+++++|..++..++- .+
T Consensus 129 ~d~~-------d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~-~P 191 (392)
T d1gc0a_ 129 VDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ-RP 191 (392)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC-CG
T ss_pred CCcc-------CHHHHHHhCCC------CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc-Ch
Confidence 7642 77899998875 8999999999999999998 556899999999999999999754332 11
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHH-HHHhcc-c-ccCcHHHHHHHHHHhcC
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAA-ATKMSS-F-GLVSSQTQYLLSALLSD 318 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~-~~~~~~-~-~~~s~~~q~~~~~~l~~ 318 (469)
. ..+-.|++.|.+|.++ ...+-.|.+++++..+.+. ....+. . ..+++...+.+.+-+++
T Consensus 192 ----l------------~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T 255 (392)
T d1gc0a_ 192 ----L------------ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT 255 (392)
T ss_dssp ----G------------GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT
T ss_pred ----H------------HhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc
Confidence 1 2256689999999994 4446668888865555442 222222 2 34678888888777776
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
. .-+.++..++...+.+.|+++
T Consensus 256 L-------~lRm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 256 L-------NLRMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhC
Confidence 3 445666677888899999877
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.77 E-value=5.8e-16 Score=150.42 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=157.6
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
....|.+.+|...+ .+..++++++..|+..++.+++++||.|+++...|.+....+ ... |+++..
T Consensus 64 T~~~LE~~la~LEg----------g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~-Gi~~~~ 132 (397)
T d1y4ia1 64 TTDALEKKLAVLER----------GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVRF 132 (397)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHhC----------CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCC-ceEeec
Confidence 35677777777764 566788999999999999999999999999999998876554 344 999988
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.. |++.+++++++ ++++|++.+|.||+..+.+ +++++++|+++|+++++|..++..++-
T Consensus 133 vd~~-------d~~~~~~~i~~------~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~--- 193 (397)
T d1y4ia1 133 VDAG-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ--- 193 (397)
T ss_dssp ECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---
T ss_pred cCCC-------CHHHHHHhcCC------CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccC---
Confidence 8643 67889988865 8999999999999999988 555888899999999999998743221
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHH-HHHhcc-cc-cCcHHHHHHHHHHhcC
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAA-ATKMSS-FG-LVSSQTQYLLSALLSD 318 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~-~~~~~~-~~-~~s~~~q~~~~~~l~~ 318 (469)
... ..+..|++.|++|.+| ...+=.|.++++++.+.+. +..++. .+ .+++...+.+.+-|+.
T Consensus 194 --~Pl------------~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T 259 (397)
T d1y4ia1 194 --QPL------------QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT 259 (397)
T ss_dssp --CGG------------GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT
T ss_pred --cch------------hcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc
Confidence 112 2256689999999985 3445557777766555442 222332 23 3677888888777776
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
. .-+.++..++...+.+.|+++
T Consensus 260 L-------~lRm~~~~~nA~~lA~~L~~h 281 (397)
T d1y4ia1 260 L-------GIRMERHCENALKIARFLEGH 281 (397)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhC
Confidence 3 445566677888899999987
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=1.1e-16 Score=160.69 Aligned_cols=318 Identities=14% Similarity=0.075 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHH-HHHHHHHHh---cCCCCEEEEccCCCcChHHHHhhhCCCEEEEee
Q 043923 89 PAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATS-ANETLMFCL---AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~-al~~~~~~l---~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~ 164 (469)
..+...+.+++.+.+|.. .....++++|+++ ++.+++.++ ..+++.|+++...|..+..++... |++.+.|+
T Consensus 93 ~~le~~~~~~~~~l~g~~---~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~-g~~~~~v~ 168 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVH---SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVIE 168 (445)
T ss_dssp HHHHHHHHHHHHHHHTCT---TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCC---cccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHc-CCeeEEEE
Confidence 467777777777766621 2345566666664 444444443 456789999999999999888877 99988886
Q ss_pred cc-CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 165 CT-SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 165 ~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
.. .+..+.+|+++|+++|++... .++.+|+++.|+|++|.+-+ +++|+++|++||+++++|++|+.......
T Consensus 169 ~~~~~~~~~id~~~l~~~i~~~~~--~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~-- 241 (445)
T d3bc8a1 169 NVLEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCM-- 241 (445)
T ss_dssp CEEETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHH--
T ss_pred eeccCcccccCHHHHHHHHHhccc--cCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhcc--
Confidence 42 235678999999999976422 26888999999999999987 55589999999999999999974321111
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcH--HHHHHHHHHhcCchh
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSS--QTQYLLSALLSDKKF 321 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~--~~q~~~~~~l~~~~~ 321 (469)
........ ..+..++..|.+|.++ .+...|+++..+....+.+......+.... ...++....+....
T Consensus 242 -~~~~~~~~-------~~~vd~~~~s~hK~~~-~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 311 (445)
T d3bc8a1 242 -HLIQQGAR-------VGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSG- 311 (445)
T ss_dssp -HHHHHHHH-------HSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHH-
T ss_pred -ccchhccC-------cCCcceEEecCccccc-cCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhc-
Confidence 11111110 1134567789999887 444568888877766655544333332222 22333322222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----hcCCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLE----KAGISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS---- 392 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~----~~g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~---- 392 (469)
.....+...+..+++.+.|. ..+..+.. +......++.+........ .+..++...+ .+.||...
T Consensus 312 ----~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~L-~~~gI~~~~~~~ 385 (445)
T d3bc8a1 312 ----YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHD-KAVTQLGSML-FTRQVSGARAVP 385 (445)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSS-CHHHHHHHHH-HHTTCCSCEEEC
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCC-CCHHHHHHHH-HHcCCCcceeec
Confidence 22333333334444444444 33554433 2233444455443222111 2333444444 45576311
Q ss_pred CCC----------CCCC----CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 393 PGS----------SCHC----TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 393 pg~----------~f~~----~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++. .|+. ....++|++++. .+++|++.++++|++++++.+|
T Consensus 386 ~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 386 LGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp SCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 111 0111 123469998875 4899999999999999999887
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.76 E-value=2.3e-16 Score=157.82 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=180.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc-CCCCcccCHHHHHHHHHHHH
Q 043923 110 DTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT-SLNGFQITETAIEEAYQLAQ 186 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~ 186 (469)
+....++..|+++++..++.+.. .+++.|+++.-.|..+...+... |++.+.++.. .+..+.+|+++|+++|++..
T Consensus 129 ~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~ 207 (434)
T d2z67a1 129 NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVETVLDGDRVYVPVEDIENAIKKEI 207 (434)
T ss_dssp CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEECCEEETTEEECCHHHHHHHHHHHH
T ss_pred CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHh-CCcceEEEeecCCCccCCCHHHHHHHHHhhh
Confidence 44556667777777777777653 37899999999999888888877 9998888742 23456799999999998754
Q ss_pred hcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEE
Q 043923 187 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHI 266 (469)
Q Consensus 187 ~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~ 266 (469)
..+ ++.+|++++|++++|.+.+ +++|+++|++||+++++|++|+....... ....... ..+..++
T Consensus 208 ~~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~---~~~~~~~--------~~~~D~~ 272 (434)
T d2z67a1 208 ELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYL---EKLKKAF--------KYRVDAV 272 (434)
T ss_dssp HTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHH---HHHHHHH--------TSCCSEE
T ss_pred hcC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhcc---ccccccc--------cCCcceE
Confidence 332 5667889999999999877 55689999999999999999974211000 0111111 2345677
Q ss_pred EccCccccCCCcceEEEEEecCHHHHHHHHHhcccccCcHH--HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043923 267 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQ--TQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGL 344 (469)
Q Consensus 267 i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~~s~~--~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 344 (469)
+.|++|.++ .+...|+++..++.+.+.............. ...+....+.... .+...++..+..+++.+.|
T Consensus 273 ~~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g-----~~~~~~~~~~~a~~l~~~L 346 (434)
T d2z67a1 273 VSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKN-----YLELVKNQKNSKKLLDELL 346 (434)
T ss_dssp EEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred EEcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHH
Confidence 889999987 4455677777777666655544333322222 2223333332222 2334444444555555555
Q ss_pred Hh----cCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----CCCCC-----CCCCCCeEEEEeec
Q 043923 345 EK----AGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS----PGSSC-----HCTEPGWFRVCFAN 411 (469)
Q Consensus 345 ~~----~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f-----~~~~~~~iRi~~~~ 411 (469)
++ .+..+........+.+.+.. +..++...|. +.||... +...+ .....+++|++++.
T Consensus 347 ~~l~~~~g~~ll~~~~~~~~~~~~~~--------~~~~l~~~L~-~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~ 417 (434)
T d2z67a1 347 NDLSKKTGGKFLDVESPIASCISVNS--------DPVEIAAKLY-NLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAI 417 (434)
T ss_dssp HHHHHHSSCCBCCCCCSSEEEEECSS--------CHHHHHHHHH-HTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCT
T ss_pred HHhhhhcCceecCCCCCceeeeecCC--------CHHHHHHHHH-HcCCeeeehhhhccccCeeeecccCCCeEEEecCC
Confidence 54 36666554433333333331 1224555554 6688542 11111 11225689999875
Q ss_pred -CCHHHHHHHHHHHHH
Q 043923 412 -MSEDTLKLSMQRLKA 426 (469)
Q Consensus 412 -~~~e~i~~~l~~L~~ 426 (469)
.++|||+.++++|++
T Consensus 418 ~~T~edID~~i~~L~k 433 (434)
T d2z67a1 418 GVRTEDIVNSVSKLEK 433 (434)
T ss_dssp TCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc
Confidence 499999999999986
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=1.4e-16 Score=155.28 Aligned_cols=298 Identities=12% Similarity=0.149 Sum_probs=185.1
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCc--EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSK--IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~--i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~ 162 (469)
-..+.|+.++++++ ++++. +++++|+|+++..++..+..+++.+++....+... ....... +.....
T Consensus 34 ~~~~~r~~l~~l~~--------~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 104 (361)
T d1m32a_ 34 VVEQIRQQLTALAT--------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHA 104 (361)
T ss_dssp THHHHHHHHHHHHC--------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhh-hccccc
Confidence 46788999999886 55554 77888999999999999988888887777654332 2223333 555555
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
+....... .+.+..+.... ..++++++.++.-+|-||...+.++ +.++|++||+++++|.+++ .+..+
T Consensus 105 ~~~~~~~~--~~~~~~~~~~~----~~~~~~~v~~~~~~~~tG~~~~i~~---i~~~~~~~g~~~~vDa~qs---~G~~~ 172 (361)
T d1m32a_ 105 YDCGEVAR--PDVQAIDAILN----ADPTISHIAMVHSETTTGMLNPIDE---VGALAHRYGKTYIVDAMSS---FGGIP 172 (361)
T ss_dssp EECCTTSC--CCHHHHHHHHH----HCTTCCEEEEESEETTTTEECCHHH---HHHHHHHHTCEEEEECTTT---TTTSC
T ss_pred ccccccCC--ccchhhHHHHH----hccCccceEEEeeecccccchhhhh---hhhhhcccceeeEeecccc---cCccc
Confidence 55443222 22222222211 1348899999999999999999555 8889999999999999998 33222
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH-----------------HH--Hhccccc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA-----------------AT--KMSSFGL 303 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~-----------------~~--~~~~~~~ 303 (469)
..+. ..+..+++.|..|.++.| ..+|+++..++.+.+. .. ......+
T Consensus 173 -~d~~------------~~~~D~~~~s~~K~l~gp-~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 238 (361)
T d1m32a_ 173 -MDIA------------ALHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFT 238 (361)
T ss_dssp -CCTT------------TTTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSC
T ss_pred -cccc------------ccccceEEeeecccccCC-CCceEEEechhhhhhhccccccccccchhhhccccccccccCCC
Confidence 2222 236678888999998533 2477777754322110 00 0011123
Q ss_pred CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecccccccCChhHHHHHH
Q 043923 304 VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
.+.....++...+..... ........++.+...+.+.+.++..|+....++ +...+.+.+|+.... +..++.
T Consensus 239 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~----~~~~~~ 313 (361)
T d1m32a_ 239 SPTHTVLAFAQALKELAK-EGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQY----RFSEFY 313 (361)
T ss_dssp CCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTC----CHHHHH
T ss_pred CCchhhhHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCC----CHHHHH
Confidence 444444444444432111 112344455566666778888888876543322 223445666643221 123455
Q ss_pred HHHHHhCCeEEeCCCCCCCCCCCeEEEEe-ecCCHHHHHHHHHHHHHHH
Q 043923 381 KKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~~~~~~iRi~~-~~~~~e~i~~~l~~L~~~l 428 (469)
..| .++||.+.+|... .++.+||+. +..+++++++++++|+++|
T Consensus 314 ~~l-~~~gi~i~~G~~~---~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 314 RRL-KEQGFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHH-HHTTEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHH-HHCCcEEECCCcC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 554 5779999988543 467899995 3469999999999999875
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.3e-16 Score=151.86 Aligned_cols=210 Identities=21% Similarity=0.234 Sum_probs=155.9
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
....|++.+|+..+ .+..++++++..|+..++.+++++||.|++....|.+....+ ... |.++..
T Consensus 51 t~~~le~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~-g~~~~~ 119 (384)
T d1cs1a_ 51 TRDVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG-CYRVLF 119 (384)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTT-SCEEEE
T ss_pred HHHHHHHHHHHHhC----------CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhccc-cccccc
Confidence 35777888887764 567889999999999999999999999999999997764443 333 777766
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
+.. .|.+.++.++.+ ++++|++..|.|||..+.+ +++++++|+++|+++|+|..++..++-
T Consensus 120 ~d~-------~d~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~--- 180 (384)
T d1cs1a_ 120 VDQ-------GDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ--- 180 (384)
T ss_dssp ECT-------TCHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---
T ss_pred ccC-------CCHHHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccc---
Confidence 653 367888888876 9999999999999999998 555888889999999999998643221
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHh-cccc-cCcHHHHHHHHHHhcCc
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKM-SSFG-LVSSQTQYLLSALLSDK 319 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~-~~~~-~~s~~~q~~~~~~l~~~ 319 (469)
... ..+-.|++.|.+|.++ ...+=.|.+++.++.+...+... ...+ .+++...+.+.+-|+..
T Consensus 181 --~Pl------------~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL 246 (384)
T d1cs1a_ 181 --NPL------------ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL 246 (384)
T ss_dssp --CGG------------GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH
T ss_pred --ccc------------ccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchh
Confidence 111 2256789999999995 33355577888666654443322 2222 36777777777777663
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
.-+.++..++...+.+.|+.+
T Consensus 247 -------~lRm~~~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 247 -------VPRMELAQRNAQAIVKYLQTQ 267 (384)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHHHHHHHHhcccC
Confidence 445566677888899999877
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.75 E-value=3.9e-16 Score=151.34 Aligned_cols=209 Identities=15% Similarity=0.163 Sum_probs=153.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhh---CCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWR---TGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~---~g~~~~~v~ 164 (469)
...|.+.+|.+-+ .+..++++++..|+.. +..++++||.|++..+.|.+....+... .|+++..+.
T Consensus 51 ~~~le~~la~LE~----------~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d 119 (380)
T d1ibja_ 51 RDALESLLAKLDK----------ADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 119 (380)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred HHHHHHHHHHHcC----------CceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccccccccC
Confidence 4677777777764 4667788888999974 5678899999999999998876654431 388888776
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.. +.+.+++++++ ++++|++..|.||+..+.+ +++|+++|+++|+++|+|..++..++ .
T Consensus 120 ~~-------~~~~~~~ai~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~-~---- 178 (380)
T d1ibja_ 120 TT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL-S---- 178 (380)
T ss_dssp TT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT-C----
T ss_pred cc-------hHHHHHHHhcc------CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeecccccccc-c----
Confidence 32 67888888754 9999999999999999998 45588888899999999999874321 1
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHh-cccc-cCcHHHHHHHHHHhcCchh
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKM-SSFG-LVSSQTQYLLSALLSDKKF 321 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~-~~~~-~~s~~~q~~~~~~l~~~~~ 321 (469)
... ..+-.+++.|++|.++ ....=.|.++..+..+.+.+... ...+ .+++...+.+.+-+++.
T Consensus 179 ~Pl------------~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl-- 244 (380)
T d1ibja_ 179 RPL------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM-- 244 (380)
T ss_dssp CGG------------GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH--
T ss_pred ccc------------ccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhh--
Confidence 111 2356789999999985 33345577777666554444333 2232 36778888888877763
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 322 TQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
..+.++..++...+.+.|+++
T Consensus 245 -----~lRm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 245 -----ALRIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTC
T ss_pred -----hhhHHHHHHHHHHHHHHHHhC
Confidence 455667777888899999987
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=2.1e-16 Score=154.97 Aligned_cols=291 Identities=10% Similarity=0.099 Sum_probs=186.0
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
...+|++.+|++++ .++++.++++|.|+.+++.++ +++||.|+++..+|.....++... |.+++.+++
T Consensus 32 ~v~~~E~~la~~~g----------~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~-g~~pv~~d~ 100 (376)
T d1mdoa_ 32 KNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANPVMVDV 100 (376)
T ss_dssp HHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECB
T ss_pred HHHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhcc-ccceeeecc
Confidence 46889999999986 456788888899999999998 799999999999999999998887 999999999
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s 245 (469)
+. +.+.+|++.+++++++ ++++|+++ +..|...+ +++|.++|+++|++||+|.+++ ++... ..
T Consensus 101 ~~-~~~~~d~~~l~~~i~~------~tkaIi~~---h~~G~~~~---~~~i~~i~~~~~i~vIeD~a~a---~g~~~-~~ 163 (376)
T d1mdoa_ 101 DR-DTLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHA---TGTSY-KG 163 (376)
T ss_dssp CT-TTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTC---TTCEE-TT
T ss_pred cc-cccCCCHHHHHHhcCC------CCeEEEEe---CCCCCccc---hhHHHHHHHhcCceEEeccchh---ccCee-CC
Confidence 86 4678999999999875 89988866 46788777 4558888889999999999997 33210 00
Q ss_pred hhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccccc----------------------
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL---------------------- 303 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~---------------------- 303 (469)
. .. +..+..++-.+.+|.++ +| .-|.+++++..+.+.++.++..+.
T Consensus 164 ~--~~--------g~~g~~~~Sf~~~K~l~-~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g 231 (376)
T d1mdoa_ 164 R--HI--------GARGTAIFSFHAIKNIT-CA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPG 231 (376)
T ss_dssp E--ET--------TSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCC
T ss_pred e--ec--------ccccCccccCCCcCCCC-CC-CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcc
Confidence 0 00 12243333334469886 33 358888888877766655432210
Q ss_pred ----CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eecCCc----eEEEE-EecccccccCCh
Q 043923 304 ----VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGIS-CLKSNA----GLFCW-VDMRHLLRSNTF 373 (469)
Q Consensus 304 ----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~-v~~~~~----g~~~~-v~~~~~~~~~~~ 373 (469)
++....+.+..-|.. +++..++.++..+++.+.|.+.... +..... .++.+ +.+......
T Consensus 232 ~n~~~~~~~Aai~~~qL~~-------~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 301 (376)
T d1mdoa_ 232 YKYNLPDLNAAIALAQLQK-------LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG--- 301 (376)
T ss_dssp CBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS---
T ss_pred cccccchhhhhhhhhhhhh-------hhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccch---
Confidence 122222222222222 2334444455666777788776432 221111 11111 222211110
Q ss_pred hHHHHHHHHHHHhCCeEEeCCCC-----------CCCCC--------CCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 374 EAEMELWKKIVYDVKLNISPGSS-----------CHCTE--------PGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 374 ~~~~~l~~~ll~~~GI~v~pg~~-----------f~~~~--------~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
....++.+.| ++.||.+++.-. +.... ...+.|-+.. ++++++++.++.|++++
T Consensus 302 ~~Rd~l~~~L-~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 302 ITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp SCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH-HHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1112456555 577998874321 00000 2346665543 58999999999999875
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.74 E-value=4.9e-16 Score=149.08 Aligned_cols=346 Identities=14% Similarity=0.130 Sum_probs=216.5
Q ss_pred CeeeeeccccccChHHHHHHHhcC-CCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRN-PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
..|+|-..||..++. +.+++... ..... +| +..-.-|....-.++++....+..++.|+ ...-+|-..
T Consensus 24 ~~l~LiaSEN~~S~~-v~~a~~S~l~nkya---eG---~pg~ryy~G~~~id~iE~la~~ra~~lF~----a~~anVqp~ 92 (405)
T d1kl1a_ 24 AKIELIASENFVSRA-VMEAQGSVLTNKYA---EG---YPGRRYYGGCEYVDIVEELARERAKQLFG----AEHANVQPH 92 (405)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSGGGGCCC---CE---ETTEESSSCCHHHHHHHHHHHHHHHHHHC----CSEEECCCS
T ss_pred cCceEeccCCcCCHH-HHHHhcCcccCcCc---CC---CCCccccCCchhHHHHHHHHHHHHHHHhC----CCcceeecc
Confidence 458998889887754 44443331 01000 11 11122243333345555445455555555 333444444
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH-----HhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD-----LKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
+++.|...++.+|++|||+|+..++...++... .... ..+++.++++. .++.+|.+++++.++.. ++
T Consensus 93 -SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~-~~~~~~y~~d~-~~~~ID~d~l~~~a~~~-----kP 164 (405)
T d1kl1a_ 93 -SGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGV-QYNFVAYGVDP-ETHVIDYDDVREKARLH-----RP 164 (405)
T ss_dssp -SHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHH-HSEEEEECBCT-TTCSBCHHHHHHHHHHH-----CC
T ss_pred -CchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccce-EEEEEEeccch-hcccccHHHHHHHHHhh-----Cc
Confidence 455677778899999999999999877765422 1112 56788888875 45689999999999876 99
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|++....+|- .++ ++++.++|.+.|.+++.|-+|....-.+..+++.... -.++..|.+|
T Consensus 165 klIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-------------aDvvt~tThK 226 (405)
T d1kl1a_ 165 KLIVAAASAYPR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-------------AHFVTTTTHK 226 (405)
T ss_dssp SEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-------------CSEEEEESSS
T ss_pred ceEEeccccccc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-------------hhheeccccc
Confidence 987776544443 334 5667778889999999999995443333334444333 2466789999
Q ss_pred ccCCCcceEEEEEecCHHHHHHHHHhccccc-CcH-HHHHH-HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043923 273 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGL-VSS-QTQYL-LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGI 349 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~~~~~~~~~~~~~~~~-~s~-~~q~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~ 349 (469)
+| +|-|-|.|++. ..+.+.+.+..-++. .++ +...+ .+.++.+ ......+...+++.++.+.|.+.|.+.|+
T Consensus 227 tl--rGPrgg~I~~~-~~~~~~i~~avfPg~qggp~~~~iAa~Aval~E--a~~~~fk~Ya~qvv~NAkaLa~~L~~~G~ 301 (405)
T d1kl1a_ 227 TL--RGPRGGMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE--ALQDDFKAYAKRVVDNAKRLASALQNEGF 301 (405)
T ss_dssp TT--CCCSCEEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cc--cCCCCceEEec-chhHHHHHhhhCcccccCcchhHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 98 78899999985 445555544332332 222 22221 1122221 11223355666777888999999999999
Q ss_pred ceecC-CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHHHH
Q 043923 350 SCLKS-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN-----MSEDTLKL 419 (469)
Q Consensus 350 ~v~~~-~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~~~~iRi~~~~-----~~~e~i~~ 419 (469)
++... .....+|+++...... ...++++|++.||.+. |+..-.+..++.+||+... ..++++.+
T Consensus 302 ~vv~ggTd~H~vlvdl~~~~~~------g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ 375 (405)
T d1kl1a_ 302 TLVSGGTDNHLLLVDLRPQQLT------GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp EEGGGSCSSSEEEEECGGGTCC------HHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred eeecCCCccceeeccccccCCc------HHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHH
Confidence 98743 3456788988642111 1346677888899886 4432222235679999843 47899999
Q ss_pred HHHHHHHHHHhhc
Q 043923 420 SMQRLKAFVDSIT 432 (469)
Q Consensus 420 ~l~~L~~~l~~~~ 432 (469)
+.+-|.++++...
T Consensus 376 ia~~I~~~l~~~~ 388 (405)
T d1kl1a_ 376 IAAIIGLVLKNVG 388 (405)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987544
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.9e-16 Score=157.81 Aligned_cols=383 Identities=12% Similarity=0.010 Sum_probs=208.6
Q ss_pred cCCCCCccchhhhhhhcCCCCCCCCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCC
Q 043923 12 THGQDSSYFLGWQEYEKNPYDEVQNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHG 87 (469)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g 87 (469)
..+...||.+.+..- +..|..+.....+||+..+ .+.+. .+.+.+++++.... .........
T Consensus 15 ~~g~~~~~P~~~~~~-~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~-------------~~~~~~~~~ 80 (425)
T d1sffa_ 15 PRGVGQIHPIFADRA-ENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK-------------LSHTCFQVL 80 (425)
T ss_dssp CTTBCCSEEEEEEEE-EBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTT-------------CSCCCTTTE
T ss_pred CCCCCCCCCceEEEE-ecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhh-------------cCCcccccc
Confidence 344444543333322 3344444455678999876 55554 46677777653211 111111111
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCCC-------
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTGV------- 158 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g~------- 158 (469)
..+....+|+.+.+.... -..+.+++++++++|+..+++... .....|+...-+|++....+....|.
T Consensus 81 ~~~~~~~la~~l~~~~p~---~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~ 157 (425)
T d1sffa_ 81 AYEPYLELCEIMNQKVPG---DFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAG 157 (425)
T ss_dssp ECHHHHHHHHHHHHHSSC---SSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTT
T ss_pred cCcHHHHHHHHHHhhhhh---cccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCC
Confidence 234445566666655320 123579999999999999987752 23457888888887754433222121
Q ss_pred ------EEEEeec--cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEE
Q 043923 159 ------EIVPIQC--TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLI 228 (469)
Q Consensus 159 ------~~~~v~~--~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI 228 (469)
.....+. ...+............+........++.+|++ -| ....|. ..+.+-++.|.++|++||+++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI 236 (425)
T d1sffa_ 158 MGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI-EPVQGEGGFYASSPAFMQRLRALCDEHGIMLI 236 (425)
T ss_dssp SCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEE-CSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred cccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEe-cCccCCCCcccCCHHHHHHHHHHHHHcCceEE
Confidence 1122221 11111111111111122111222335665554 45 334554 5788999999999999999999
Q ss_pred EeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcH
Q 043923 229 SDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSS 306 (469)
Q Consensus 229 ~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~ 306 (469)
.||++.++.-.+.. ...+... ..+.++ +++|++| .|+.+|.+++.++ +.+.+.... ..+..++
T Consensus 237 ~DEV~tG~gR~g~~--~a~~~~g--------v~PDi~---~~gK~l~-gG~P~~av~~~~~-i~~~~~~~~~~~T~~gnp 301 (425)
T d1sffa_ 237 ADEVQSGAGRTGTL--FAMEQMG--------VAPDLT---TFAKSIA-GGFPLAGVTGRAE-VMDAVAPGGLGGTYAGNP 301 (425)
T ss_dssp EECTTTTTTTTSSS--SGGGGTT--------SCCSEE---EECGGGG-TSSCCEEEEEEHH-HHTTSCTTSBCCSSSSCH
T ss_pred eccccccCCCcchh--hHHHhcC--------CCccce---ecccccC-CCcceEEEEEcHH-HHHhhCCCCCCCCCCcCH
Confidence 99999974222222 1112211 223333 5899998 8999999999544 433332221 1123567
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEeccccccc--CChhHHHHHHHHHH
Q 043923 307 QTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRS--NTFEAEMELWKKIV 384 (469)
Q Consensus 307 ~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~--~~~~~~~~l~~~ll 384 (469)
++..++.+.|+...- .+..+...+.-...++.+.+.+++.++.......|.++.+.+...... .+......+..+++
T Consensus 302 l~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~ 380 (425)
T d1sffa_ 302 IACVAALEVLKVFEQ-ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 380 (425)
T ss_dssp HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHH
Confidence 777777766653221 111222222222233334444555554332222345666666432111 11122345666665
Q ss_pred HhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 385 YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 385 ~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
++||.+.++... .+.+|++.+. +++++|++++++|++++++.+|
T Consensus 381 -~~Gvl~~~~g~~----~n~i~~~PpL~it~~eid~~l~~l~~al~eikk 425 (425)
T d1sffa_ 381 -DKGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425 (425)
T ss_dssp -HTTEECEEESTT----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred -HCCCEEeccCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 569999875432 4579999876 5999999999999999998875
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.72 E-value=5e-15 Score=143.99 Aligned_cols=211 Identities=16% Similarity=0.193 Sum_probs=151.0
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEE
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVP 162 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~ 162 (469)
....|.+.||+..+ .+..++++++..|+..++.+++++||.|++....|.+....+ ... |+++..
T Consensus 68 t~~~LE~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~-gi~~~~ 136 (398)
T d1qgna_ 68 TTVVLEEKISALEG----------AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATV 136 (398)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGG-TCEEEE
T ss_pred HHHHHHHHHHHHhC----------CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccc-cccccc
Confidence 35778888888764 567899999999999999999999999999999998865543 334 888877
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 163 IQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 163 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
++.. +.+..++.+.. +++++|++.+|.||+..+.+ +++|+++|+++|+++|+|..++..++-.
T Consensus 137 ~~~~-------~~~~~~~~~~~-----~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~-- 199 (398)
T d1qgna_ 137 IDPA-------DVGALELALNQ-----KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK-- 199 (398)
T ss_dssp ECSS-------CHHHHHHHHHH-----SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred cccc-------chhhhhhhhcc-----ccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCC--
Confidence 7632 33444443322 28999999999999999988 5568889999999999999987432211
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhcccc-cCcHHHHHHHHHHhcCch
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFG-LVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~~ 320 (469)
.. ..+-.|++.|++|.+|-.+ +=.|.+..+...+.........++ .+++...+.+.+-+++
T Consensus 200 ---Pl------------~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-- 262 (398)
T d1qgna_ 200 ---AL------------ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-- 262 (398)
T ss_dssp ---TT------------TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG--
T ss_pred ---ch------------hhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH--
Confidence 11 2356689999999985333 444666664443333322223333 3677777777777765
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.-+.++..++...+.+.|+++
T Consensus 263 -----L~lRm~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 263 -----LHLRVQQQNSTALRMAEILEAH 284 (398)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666777888899999887
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.72 E-value=1.1e-16 Score=158.61 Aligned_cols=289 Identities=11% Similarity=0.023 Sum_probs=177.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh------cCCCCEEEEccCCCcChHHHHhhhCCCEEE
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL------AEPGEAFLLPTPYYPGFDRDLKWRTGVEIV 161 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l------~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~ 161 (469)
..++|+.+|++++ +++++|++|+++|+++..++... ..+++.|++.+-.+.+........ +.++.
T Consensus 72 ~e~~R~~iA~llg--------a~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~ 142 (404)
T d1qz9a_ 72 SERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG-LADML 142 (404)
T ss_dssp HHHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhh-hheee
Confidence 3578888888886 78999999999999998776532 367888888887766544333322 33332
Q ss_pred EeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCC
Q 043923 162 PIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 162 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~ 241 (469)
.++.+.. ...+++.+++++++ ++++|+++..+|.||..+|.++ |+++|+++|+.+++|.+++ .+..
T Consensus 143 ~~~~~~~--~~~~~~~~~~~i~~------~T~lV~i~~v~~~tG~~~pv~~---i~~~~~~~~~~~~vD~~q~---~g~~ 208 (404)
T d1qz9a_ 143 QQGYTLR--LVDSPEELPQAIDQ------DTAVVMLTHVNYKTGYMHDMQA---LTALSHECGALAIWDLAHS---AGAV 208 (404)
T ss_dssp CSSCEEE--EESSGGGHHHHCST------TEEEEEEESBCTTTCBBCCHHH---HHHHHHHHTCEEEEECTTT---TTTS
T ss_pred eeceecc--ccccchhHHHhcCC------CceEEEEecccccccceecHHH---HhccccccccceeEEeecc---cccc
Confidence 2222211 12456777877765 9999999999999999999555 8889999999999999997 3332
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh-----------------------
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM----------------------- 298 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~----------------------- 298 (469)
+ ..+... +..+++.|.+|.++.+.-.+|+++.++..... ....
T Consensus 209 ~-~~~~~~------------~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (404)
T d1qz9a_ 209 P-VDLHQA------------GADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL-VPQPLSGWFGHSRQFAMEPRYEPSNGI 274 (404)
T ss_dssp C-CCHHHH------------TCSEEEECSSSTTCCCTTCCCEEEECTTTTTT-SCCSCCCGGGBCTTSCCCSSCCBCSSG
T ss_pred c-cccccc------------cceEEEEechhhcccCCceEEEEEechhhhhh-CCccccccCCccccccccccccccccc
Confidence 2 333333 45577789999885344345777764433211 1000
Q ss_pred --cccccCcHHHHH---HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCceecCC----ceEEEEEeccccc
Q 043923 299 --SSFGLVSSQTQY---LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSN----AGLFCWVDMRHLL 368 (469)
Q Consensus 299 --~~~~~~s~~~q~---~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~g~~v~~~~----~g~~~~v~~~~~~ 368 (469)
...+..+..... .....+.... ...++.....+......+.+.+.. .++++..|. .+..+.+.+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~-- 350 (404)
T d1qz9a_ 275 ARYLCGTQPITSLAMVECGLDVFAQTD--MASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE-- 350 (404)
T ss_dssp GGGCCSCCCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHhh--HHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC--
Confidence 001112222222 2333333332 222333333333333334444433 377776432 12355566553
Q ss_pred ccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhh
Q 043923 369 RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 369 ~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~ 431 (469)
..++.+.| .++||.+... .++.||||++. .+++|+++++++|++++++.
T Consensus 351 -------~~~v~~~L-~~~gi~~~~r------~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 351 -------GYAVIQAL-IDRGVIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp -------HHHHHHHH-HTTTEECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHH-HHCCCEEeec------CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 12345554 5779965311 25689999963 48999999999999999864
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3e-15 Score=144.33 Aligned_cols=346 Identities=13% Similarity=0.081 Sum_probs=215.2
Q ss_pred CeeeeeccccccChHHHHHHHhcC-CCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEe
Q 043923 39 GIIQMGLAENQLSFDLLESWLDRN-PDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLT 117 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t 117 (469)
..|+|-..||..++. +.+++... .... .+| +..-+-|+...-.+++.....+..++.|+ ....+|-.
T Consensus 27 ~~i~LiaSEN~~S~~-v~~a~~S~l~nkY---aeG---~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----a~~anVqp- 94 (416)
T d1dfoa_ 27 EHIELIASENYTSPR-VMQAQGSQLTNKY---AEG---YPGKRYYGGCEYVDIVEQLAIDRAKELFG----ADYANVQP- 94 (416)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSGGGGCC---CCE---ETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCC-
T ss_pred cCceEecCcccCCHH-HHHHhcCcccCcc---cCC---CCCCcccCCChhHHHHHHHHHHHHHHHhC----CCcceeec-
Confidence 458998889887654 44443331 0000 011 11112233333334555444455555555 33334444
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH-----hhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCce
Q 043923 118 AGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL-----KWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKV 192 (469)
Q Consensus 118 ~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~-----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 192 (469)
.+++.|...++.++++|||+|+..++.+.++...- ... ..+.++++++. ...+|.+++++...+. ++
T Consensus 95 ~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~-~~~~~~y~~d~--~~~IDyd~l~~~a~~~-----kP 166 (416)
T d1dfoa_ 95 HSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGK-LYNIVPYGIDA--TGHIDYADLEKQAKEH-----KP 166 (416)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHH-HSEEEEECBCS--SSSBCHHHHHHHHHHH-----CC
T ss_pred ccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCc-eEEEEecccCC--ccCccHHHHHHHHHHh-----cc
Confidence 55667788888999999999999999888765321 111 45777777764 2349999999998876 99
Q ss_pred eEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCcc
Q 043923 193 KGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSK 272 (469)
Q Consensus 193 ~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK 272 (469)
++|++....+| ..++ ++++.++|.+.|.++++|.+|......+..+++.... -.++.+|.+|
T Consensus 167 klIi~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-------------aDvvt~tThK 228 (416)
T d1dfoa_ 167 KMIIGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-------------AHVVTTTTHK 228 (416)
T ss_dssp SEEEEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-------------SSEEEEESSS
T ss_pred ceEEecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-------------cceeeeehhh
Confidence 98887744433 4555 5557777789999999999996443333334443333 2477889999
Q ss_pred ccCCCcceEEEEEecC--HHHHHHHHHhccccc-CcH-HHHHH-HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 273 DLGLPGFRVGAIYSND--DMVVAAATKMSSFGL-VSS-QTQYL-LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 273 ~~g~~GlRiG~li~~~--~~~~~~~~~~~~~~~-~s~-~~q~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+| +|-|-|.|++.. +.+.+.+.+..-++. .++ +...+ .+.++.+ .+....+...+++.++.+.|.+.|.+.
T Consensus 229 tl--rGPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~E--a~~~~fk~Y~~qvv~NA~~La~~L~~~ 304 (416)
T d1dfoa_ 229 TL--AGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKE--AMEPEFKTYQQQVAKNAKAMVEVFLER 304 (416)
T ss_dssp TT--CCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cc--cCCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 788889999852 455454443322221 122 22221 1222221 112223555677778889999999999
Q ss_pred CCceec-CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHH
Q 043923 348 GISCLK-SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN-----MSEDTL 417 (469)
Q Consensus 348 g~~v~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~~~~iRi~~~~-----~~~e~i 417 (469)
|+++.. ...+..+++++...-- ....++.+|++.||.+. |+..-.+..++.+||+... ..++++
T Consensus 305 G~~iv~ggTdnHlvlvdl~~~~~------~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~ 378 (416)
T d1dfoa_ 305 GYKVVSGGTDNHLFLVDLVDKNL------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEA 378 (416)
T ss_dssp TCEEGGGSCSSSEEEEECGGGTC------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred CcccccCCCCCceeEEEecccCC------CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHH
Confidence 999864 3344677899864211 11346777889999886 4432222235679999843 477999
Q ss_pred HHHHHHHHHHHHhhc
Q 043923 418 KLSMQRLKAFVDSIT 432 (469)
Q Consensus 418 ~~~l~~L~~~l~~~~ 432 (469)
+++.+-|.++++...
T Consensus 379 ~~iA~~I~~~l~~~~ 393 (416)
T d1dfoa_ 379 KELAGWMCDVLDSIN 393 (416)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999987544
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.71 E-value=1.8e-15 Score=148.76 Aligned_cols=299 Identities=14% Similarity=0.145 Sum_probs=187.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDT-SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (469)
+.+.|+.++++++ ++. +.|+++.|+|++++.++..+..+|+.+++....+.... ..+... +...+.+.
T Consensus 52 ~~~~r~~L~~ll~--------~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~-~~~~~~~~ 122 (388)
T d2ch1a1 52 MDEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIE 122 (388)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhhhh-cccccccc
Confidence 3455666666664 343 45667788999999999999999999988877654432 223344 77877777
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.... ...+.+..+..+... +++++++++-+|.||...+.++ +..+|+++|.++++|.+.+ ++..+ .
T Consensus 123 ~~~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~~~~---i~~~~~~~~~~~~vD~~ss---~g~~p-i 188 (388)
T d2ch1a1 123 GPPD--RPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQPLEG---VGQICHQHDCLLIVDAVAS---LCGVP-F 188 (388)
T ss_dssp CCTT--SCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTT---HHHHHHHTTCEEEEECTTT---BTTBC-C
T ss_pred cccc--cccchhhhhhhhccC-----Ccceeeeeecccccccccchhh---hcchhccccceeeeeeeec---ccccc-c
Confidence 6543 235666666665543 7889999988999999999766 7778889999999999998 44332 2
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh------------------------cc
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM------------------------SS 300 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~------------------------~~ 300 (469)
.+. ..+.++++.|-.|.++ +.-.+|+++..+..+....... ..
T Consensus 189 d~~------------~~~~d~~~~s~~K~~~-gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (388)
T d2ch1a1 189 YMD------------KWEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRY 255 (388)
T ss_dssp CTT------------TTTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC
T ss_pred chh------------ccCceEEEEccccccC-CCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhccccccccc
Confidence 222 3356778889999885 3335777777554443221100 01
Q ss_pred cccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecccccccCChhHH
Q 043923 301 FGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLRSNTFEAE 376 (469)
Q Consensus 301 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~----~g~~~~v~~~~~~~~~~~~~~ 376 (469)
....+.....++...+.... ........++.+.....+...+...++....+. +...+.+.+++..+ .
T Consensus 256 ~~t~~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~------~ 327 (388)
T d2ch1a1 256 HHTVASNLIFALREALAQIA--EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD------W 327 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------H
T ss_pred CccchHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCC------H
Confidence 12223333333333332211 111223333333344444555555444433211 22356677775332 2
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEE-eecC-CHHHHHHHHHHHHHHHHhhc
Q 043923 377 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVC-FANM-SEDTLKLSMQRLKAFVDSIT 432 (469)
Q Consensus 377 ~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~-~~~~-~~e~i~~~l~~L~~~l~~~~ 432 (469)
.++...|++++||.|.+|... ...+.|||+ ++.. ++|+++.++++|+++|+..+
T Consensus 328 ~~l~~~l~~~~gI~v~~G~~~--~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 328 WKVSQYAMNNFSLEVQGGLGP--TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp HHHHHHHHHHHCBCCBCCCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCEEEeCCCcc--ccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 357778888889999988642 345689999 6654 78999999999999999754
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.70 E-value=1.2e-15 Score=149.19 Aligned_cols=296 Identities=13% Similarity=0.114 Sum_probs=187.2
Q ss_pred cHHHHHHHHHHHHhHcCCCCCC-CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChH--HHHhhhCCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTF-DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFD--RDLKWRTGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~-~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (469)
+.+.|+.++++++ + +...|+++.|+++++..++..+..+|+.+++..-.+.... ...... +.....+.
T Consensus 53 ~~~~r~~l~~ll~--------~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 123 (377)
T d1vjoa_ 53 MDEIQSLLRYVWQ--------TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRY-GADVRTIS 123 (377)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhh-cccccccc
Confidence 4566666666664 3 3457778888999999999999999999998887665432 222233 56655555
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
..... ..+.+..+...... +++++.+++-+|.||...+.++ +.++|+++|.++++|.+++ ++..+ .
T Consensus 124 ~~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~i~~---i~~~~~~~g~~~~vDa~~~---~g~~~-~ 189 (377)
T d1vjoa_ 124 KPWGE--VFSLEELRTALETH-----RPAILALVHAETSTGARQPLEG---VGELCREFGTLLLVDTVTS---LGGVP-I 189 (377)
T ss_dssp CCTTC--CCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTT---HHHHHHHHTCEEEEECTTT---TTTSC-C
T ss_pred cCCCC--cccchhhhhhhhcC-----cceeeeeeeeeccceeeechhh---hhhhhhhccceEEEecchh---hhhhh-h
Confidence 44322 23445555544432 7888888888899999999665 8888889999999999997 33322 2
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh---------------------ccccc
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---------------------SSFGL 303 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~---------------------~~~~~ 303 (469)
.+. ..+..+++.|..|.++ ++-.+|+++..+..+....... .....
T Consensus 190 ~~~------------~~~~d~~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (377)
T d1vjoa_ 190 FLD------------AWGVDLAYSCSQKGLG-CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHT 256 (377)
T ss_dssp CTT------------TTTCSEEECCSSSTTC-SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSC
T ss_pred ccc------------ccccceeeeccccccc-CCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccc
Confidence 221 2356677889999885 3335677776444433221110 00111
Q ss_pred CcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecccccccCChhHHHHHH
Q 043923 304 VSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLRSNTFEAEMELW 380 (469)
Q Consensus 304 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~~l~ 380 (469)
.+.....++..+..... ....+...++.++..+++.+.+...++....+. ....+.+.+++... ..++.
T Consensus 257 ~~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~------~~~l~ 328 (377)
T d1vjoa_ 257 APINLYYALREALRLIA--QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVD------GKAVA 328 (377)
T ss_dssp CCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCC------HHHHH
T ss_pred cceechhhhHHHHhhhh--hcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCCC------HHHHH
Confidence 22222222222221111 222455666777777888888888876543221 22345566664322 23577
Q ss_pred HHHHHhCCeEEeCCCCCCCCCCCeEEEE-eecC-CHHHHHHHHHHHHHHHH
Q 043923 381 KKIVYDVKLNISPGSSCHCTEPGWFRVC-FANM-SEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 381 ~~ll~~~GI~v~pg~~f~~~~~~~iRi~-~~~~-~~e~i~~~l~~L~~~l~ 429 (469)
..|++++||.+..|... ...+.|||+ ++.. ++|++++++++|+++++
T Consensus 329 ~~L~~~~gI~v~~G~~~--~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 329 RRLLNEHNIEVGGGLGE--LAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp HHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCEEEecCccc--ccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 88888889999987643 245689999 4543 78999999999999874
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=4.5e-15 Score=144.41 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=151.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHh----hhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLK----WRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~----~~~g~~~~~v 163 (469)
...|.+.+|+.-+ .+..++++++..|+..++.+++++||.|++....|.+....+. .. |+++..+
T Consensus 60 ~~~le~~la~LEg----------~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~-Gi~~~~~ 128 (391)
T d1cl1a_ 60 HFSLQQAMCELEG----------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTSWF 128 (391)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC----------CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccc-ccccccc
Confidence 4677777777653 5678999999999999999999999999999999988765543 34 8888877
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh--cCeEEEEeccccccccCCC
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE--KNIHLISDEIYSGTVFSSP 241 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~--~~~~iI~Deay~~~~~~~~ 241 (469)
... |.+++++++++ ++++|++.+|.||+..+.+.+. ++++|++ +|+++|+|..++..++-
T Consensus 129 d~~-------d~~~~~~~i~~------~t~~i~~EtpsNP~l~v~Di~~---i~~~a~~~~~g~~~vVDnT~atP~~~-- 190 (391)
T d1cl1a_ 129 DPL-------IGADIVKHLQP------NTKIVFLESPGSITMEVHDVPA---IVAAVRSVVPDAIIMIDNTWAAGVLF-- 190 (391)
T ss_dssp CTT-------CGGGGGGTCCT------TEEEEEEESSCTTTCCCCCHHH---HHHHHHHHCTTCEEEEECTTTTTTSS--
T ss_pred cCc-------ccccccccccc------ccceeeecccCcccccccccHH---HHHHHHhccCCcEEEEeccccchhhh--
Confidence 632 55777777654 8999999999999999998555 6666655 59999999998753221
Q ss_pred CccchhhhhhccccccCCcCCeEEEEccCccccCC-CcceEEEEEecCHHHHHHHHHhccc-ccCcHHHHHHHHHHhcCc
Q 043923 242 GFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGL-PGFRVGAIYSNDDMVVAAATKMSSF-GLVSSQTQYLLSALLSDK 319 (469)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~-~GlRiG~li~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~ 319 (469)
... ..+-.|++.|++|.++= ...=.|.++.++............. ..+++...+.+.+-+++.
T Consensus 191 ---~Pl------------~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL 255 (391)
T d1cl1a_ 191 ---KAL------------DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTL 255 (391)
T ss_dssp ---CGG------------GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTH
T ss_pred ---ccc------------ccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhH
Confidence 112 22567889999999853 3345577777555444433322223 246777777777766663
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 320 KFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
.-+.++..++...+.+.|+++
T Consensus 256 -------~lR~~~~~~nA~~vA~~L~~h 276 (391)
T d1cl1a_ 256 -------GVRLRQHHESSLKVAEWLAEH 276 (391)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHHHHHHHHHHhc
Confidence 445666777888899999887
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1e-15 Score=154.56 Aligned_cols=326 Identities=14% Similarity=0.147 Sum_probs=196.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCE---------EEEccCCCcChHH
Q 043923 80 ALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEA---------FLLPTPYYPGFDR 150 (469)
Q Consensus 80 ~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~---------Vl~~~P~y~~~~~ 150 (469)
..|...++..+|+++++++++ .+.+++++++++|..+++.+++++||. +......|.....
T Consensus 68 ~~Y~~~~~~~~le~~~a~l~G----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 137 (467)
T d2v1pa1 68 EAFSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQG 137 (467)
T ss_dssp CCSSSCHHHHHHHHHHHHHTC----------CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHH
T ss_pred hhhcCCchHHHHHHHHHHHHC----------CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHH
Confidence 358777778899999999885 567889999999999999998766654 3444444444444
Q ss_pred HHhhhCCCEEEEeeccCC--------CCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCC-CCCCCHHHHHHHHHHHH
Q 043923 151 DLKWRTGVEIVPIQCTSL--------NGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPL-GTTMSRNELNLLVNIIT 221 (469)
Q Consensus 151 ~~~~~~g~~~~~v~~~~~--------~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPt-G~~~s~e~l~~l~~~~~ 221 (469)
.+... |..++.++.+.. ....+|++++++.+++... ..+.++++.+.+|.. |.+++.++++++.++|+
T Consensus 138 ~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~ 214 (467)
T d2v1pa1 138 HSQIN-GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP--NNVPYIVATITSNSAGGQPVSLANLKAMYSIAK 214 (467)
T ss_dssp HHHHT-TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCG--GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHH
T ss_pred HHHHc-CCeeeecccccccccccccccccCCCHHHHHHHHhhcCc--cccceeeecceeeccccccCCHHHHHHHHHHHH
Confidence 45555 999988876531 1245789999999976421 256777787777644 68889999999999999
Q ss_pred hcCeEEEEeccccccc--cC-----CCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH
Q 043923 222 EKNIHLISDEIYSGTV--FS-----SPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA 294 (469)
Q Consensus 222 ~~~~~iI~Deay~~~~--~~-----~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~ 294 (469)
+||+++|+|+++.... +. +....++....+++ .....++..|.+|.++. ...|++...+..+...
T Consensus 215 ~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~d~~s~s~~K~~~~--~~gg~i~~~~~~~~~~ 286 (467)
T d2v1pa1 215 KYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRET------YKYADMLAMSAKKDAMV--PMGGLLCMKDDSFFDV 286 (467)
T ss_dssp HTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHH------GGGCSEEEEESSSTTCC--SSCEEEEECSGGGHHH
T ss_pred HcCCEEEEechhhhccccccccccccccCCcccccchhh------cccCCEEEecCCCCCCC--CCceeEEecchhhhhH
Confidence 9999999999975210 00 01112222222211 11344556688888753 3457777765544332
Q ss_pred HHHh-------c---ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEec
Q 043923 295 ATKM-------S---SFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 364 (469)
Q Consensus 295 ~~~~-------~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~ 364 (469)
.... . .++..+.....++...+..... .++++ +..++.++|.+.|.+.+..+.+.... .+.++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~----~~~~~~~~l~~~L~~~~~~v~~~~~~-~~~~~~ 360 (467)
T d2v1pa1 287 YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN-LDWLA----YRIAQVQYLVDGLEEIGVVCQQAGGH-AAFVDA 360 (467)
T ss_dssp HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC-HHHHH----HHHHHHHHHHHHHHHTTCCEEEECSS-CEEEEH
T ss_pred HHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhh-HHHHH----HHHHHHHHHHHHHHhcCCcccCCCcc-ceeecc
Confidence 2211 1 1112233333333333322211 22232 33456678888898888776654332 222222
Q ss_pred ccc---cccCChhHHHHHHHHHHHhCCeEEeCCCC--------C---CCCCCCeEEEEeec--CCHHHHHHHHHHHHHHH
Q 043923 365 RHL---LRSNTFEAEMELWKKIVYDVKLNISPGSS--------C---HCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 365 ~~~---~~~~~~~~~~~l~~~ll~~~GI~v~pg~~--------f---~~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l 428 (469)
... ..... .....+...++.+.||....... . .+.....+|+++.. .++++|++++++|+++.
T Consensus 361 ~~~~~~~~~~~-~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~ 439 (467)
T d2v1pa1 361 GKLLPHIPADQ-FPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp HHHSTTSCGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhcCCcchhh-hhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 211 11111 22234566677788985431110 0 01234679999853 38999999999999998
Q ss_pred Hhhcc
Q 043923 429 DSITT 433 (469)
Q Consensus 429 ~~~~~ 433 (469)
++.++
T Consensus 440 ~~~~~ 444 (467)
T d2v1pa1 440 ENAAN 444 (467)
T ss_dssp HTGGG
T ss_pred HHHHh
Confidence 75544
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=3e-15 Score=149.66 Aligned_cols=352 Identities=13% Similarity=0.053 Sum_probs=223.5
Q ss_pred eeeeccccccChHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCC
Q 043923 41 IQMGLAENQLSFDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAG 119 (469)
Q Consensus 41 i~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G 119 (469)
++|....+...++...+++.+..+. ....+..++...++.+.+.+++.+.++..-... ...=.+|+|
T Consensus 56 ~n~asf~~t~~~~~~~~l~~~~~~~------------N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~G 123 (450)
T d1pmma_ 56 QNLATFCQTWDDENVHKLMDLSINK------------NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIG 123 (450)
T ss_dssp GBCSCCSCCCCCHHHHHHHHHTTTC------------BTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESS
T ss_pred ccccccccCCCCHHHHHHHHHHHhc------------CCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCc
Confidence 3454444445555566666654221 112222233457888888888888776321111 122579999
Q ss_pred hHHHHHHHHHHhc------------CCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHh
Q 043923 120 ATSANETLMFCLA------------EPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQK 187 (469)
Q Consensus 120 ~~~al~~~~~~l~------------~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 187 (469)
+++|+..++.+.. .....+++....|.++..+++.. |+++..+|.++ .++.+|++++++++++
T Consensus 124 gSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~-gi~~~~v~~~~-~~~~~d~~~L~~~i~~--- 198 (450)
T d1pmma_ 124 SSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYW-DVELREIPMRP-GQLFMDPKRMIEACDE--- 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHT-TCEEEECCCBT-TBCSCCHHHHHHHCCT---
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHc-CCCceEeeecC-CCCcCcHHHHHHHhhh---
Confidence 9999998887642 12235777777888888888887 99999999875 4689999999999876
Q ss_pred cCCceeEEEEecCCCCCCCCCCHHHHHHHHH---HHHhcCeEEEEeccccccc--cCCCCccchhhhhhccccccCCcCC
Q 043923 188 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVN---IITEKNIHLISDEIYSGTV--FSSPGFVSIMEILKDRNCENTQVWN 262 (469)
Q Consensus 188 ~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~---~~~~~~~~iI~Deay~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~ 262 (469)
++.+|+.+.+++.||.+-+.+++..+++ .|+++|+++++|.||+++. |..+...-... ...
T Consensus 199 ---~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~-----------~~~ 264 (450)
T d1pmma_ 199 ---NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFR-----------LPR 264 (450)
T ss_dssp ---TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-----------STT
T ss_pred ---CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhc-----------ccc
Confidence 8888999999999999999887766654 4677999999999998653 22221111111 224
Q ss_pred eEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh---------cccc-cCc-----HHHHHHHHHHhcCchhhHHHHH
Q 043923 263 RVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---------SSFG-LVS-----SQTQYLLSALLSDKKFTQNYIS 327 (469)
Q Consensus 263 ~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~---------~~~~-~~s-----~~~q~~~~~~l~~~~~~~~~~~ 327 (469)
...+..|.+|.++ ....+||++..++......... ..+. ..+ ...+++....+. .+-++
T Consensus 265 aDSi~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G-----~~G~~ 338 (450)
T d1pmma_ 265 VKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYT 338 (450)
T ss_dssp EEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHH-----HHHHH
T ss_pred eeEeecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhh-----HHHHH
Confidence 5666789999875 6677999998765432111110 0111 011 122333323222 33356
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCceecC----CceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCC--C
Q 043923 328 ENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHC--T 400 (469)
Q Consensus 328 ~~~~~l~~~~~~l~~~L~~~-g~~v~~~----~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~--~ 400 (469)
+..++..+..++|.+.|++. ++++..+ .+-..+.+++.+..... .+..++.. .|++.|..|.. ..+.+ .
T Consensus 339 ~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~--~~~~~l~~-~L~~~Gw~v~~-~~~p~~~~ 414 (450)
T d1pmma_ 339 KVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPG--YTLYDLSE-RLRLRGWQVPA-FTLGGEAT 414 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCS--SCHHHHHH-HHHTTTCBCCE-EECCTTCT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCC--CCHHHHHH-HHHHcCCeeec-cCcCCCcC
Confidence 67777778889999999988 4666532 22234666665321111 12223444 45577976632 11111 2
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 401 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 401 ~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
....+|+.+.. .++++++++++.|++++++.++
T Consensus 415 ~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 415 DIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 24579999976 4899999999999999998876
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.69 E-value=1.3e-15 Score=145.26 Aligned_cols=207 Identities=17% Similarity=0.262 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEEeec
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVPIQC 165 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~v~~ 165 (469)
.|++.+|+..+ .+..+++++++.|+..++.+++++||.|++..+.|.+.... ++.. |+++..++.
T Consensus 2 aLE~~la~Leg----------~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~-gi~~~~~d~ 70 (331)
T d1pffa_ 2 ALEGKIAKLEH----------AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF-GVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEECT
T ss_pred HHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhc-CeEEEEecc
Confidence 57788888874 56788999999999999999999999999999999876544 4444 999988865
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHH-HhcCeEEEEeccccccccCCCCcc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNII-TEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~-~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
. |++.+++++++ ++++|++.+|.||+..+.+.+. +++++ +++|+++|+|..++..++-.+
T Consensus 71 ~-------d~~~~~~~i~~------~t~~i~~Es~~np~~~v~d~~~---~~~~~a~~~~~~~vVDnT~atp~~~~p--- 131 (331)
T d1pffa_ 71 A-------VPGNIEKHLKP------NTRIVYFETPANPTLKVIDIED---AVKQARKQKDILVIVDNTFASPILTNP--- 131 (331)
T ss_dssp T-------STTHHHHTCCT------TEEEEEEESSCTTTCCCCCHHH---HHHHHTTSSSCEEEEECTTTHHHHCCG---
T ss_pred c-------chhhHhhhccc------ccceeeeecccccccccccchh---hhhhhhcccCceEEeeccccccccccc---
Confidence 3 56788888765 8999999999999999998655 55553 578999999999975432211
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHH-hcc-cc-cCcHHHHHHHHHHhcCch
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATK-MSS-FG-LVSSQTQYLLSALLSDKK 320 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~-~~~-~~-~~s~~~q~~~~~~l~~~~ 320 (469)
. ..+-.|++.|++|.++ ....-.|.+++++....+.... ... .+ .+++...+.+.+-+++
T Consensus 132 --l------------~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-- 195 (331)
T d1pffa_ 132 --L------------DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-- 195 (331)
T ss_dssp --G------------GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH--
T ss_pred --c------------ccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH--
Confidence 1 2255688999999985 3445557777755544443222 222 22 3566666666555443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 321 FTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+..+.++..++...+.+.|+++
T Consensus 196 -----l~~Rm~~~~~nA~~lA~~L~~h 217 (331)
T d1pffa_ 196 -----LDMRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHHHHHhhhhC
Confidence 4566677788888999999987
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=2.8e-15 Score=145.06 Aligned_cols=293 Identities=14% Similarity=0.063 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcC--hHHHHhhhCCCEEEEeeccC
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPG--FDRDLKWRTGVEIVPIQCTS 167 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~--~~~~~~~~~g~~~~~v~~~~ 167 (469)
++.+.+.+.+++.++ .+.+.++++.|+|++++.++..++.+||+|++....+.+ +...++.. |.++..+..+.
T Consensus 33 ~i~~~~~~~l~~ll~----~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~-~~~~~~~~~~~ 107 (348)
T d1iuga_ 33 EVFLKARGLLREAFR----TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERLDYPY 107 (348)
T ss_dssp HHHHHHHHHHHHHHT----CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEECCT
T ss_pred HHHHHHHHHHHHHhC----CCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhc-CcccccccccC
Confidence 333334444444333 456778899999999999999999999998888776432 22334455 88888777653
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccccccccCCCCccc
Q 043923 168 LNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK--NIHLISDEIYSGTVFSSPGFVS 245 (469)
Q Consensus 168 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Deay~~~~~~~~~~~s 245 (469)
.. .++++... .++++.+++++..+.||...+.++ +.++|+++ +.++++|.+.+ ++..+ ..
T Consensus 108 g~--~~~~~~~~---------~~~~~~v~~~h~eTstG~~~~i~~---i~~~~~~~~~~~l~~vDavss---~g~~~-i~ 169 (348)
T d1iuga_ 108 GD--TPRPEDVA---------KEGYAGLLLVHSETSTGALADLPA---LARAFKEKNPEGLVGADMVTS---LLVGE-VA 169 (348)
T ss_dssp TC--CCCTTTSC---------CSSCSEEEEESEETTTTEECCHHH---HHHHHHHHCTTCEEEEECTTT---BTTBC-CC
T ss_pred CC--cccccccc---------ccCCCeeEEEecchhhhhhccHHH---HHHHHHhhhccceeechhhhc---ccccc-cc
Confidence 22 23333321 237888999999999999999666 67777776 47899999887 44332 22
Q ss_pred hhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEecCHHHHHH------------HH---HhcccccCcHHHH
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYSNDDMVVAA------------AT---KMSSFGLVSSQTQ 309 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~~~~~~~~~------------~~---~~~~~~~~s~~~q 309 (469)
+. ..+..+++.|..|.+ |.|| +|+++.+++.+... .. ....+++++....
T Consensus 170 ~d------------~~~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i 235 (348)
T d1iuga_ 170 LE------------AMGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLV 235 (348)
T ss_dssp SG------------GGTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHH
T ss_pred cc------------cccCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHH
Confidence 21 225667888999999 6666 78888865543221 11 1122345566666
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc-eEEEEEecccccccCChhHHHHHHHHHHHhCC
Q 043923 310 YLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA-GLFCWVDMRHLLRSNTFEAEMELWKKIVYDVK 388 (469)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~-g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~G 388 (469)
+++..+|+... . ...+..++.+...+.+...++..|++..+... .-.+.+.+|+..+ ..++.. .++++|
T Consensus 236 ~~l~~aL~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~------~~~~~~-~l~~~g 305 (348)
T d1iuga_ 236 LAVAAVLEEVL--P-RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP------YARVKE-AFAQRG 305 (348)
T ss_dssp HHHHHHHHHHG--G-GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC------HHHHHH-HHHTTT
T ss_pred HHHHHHHHHHH--H-HHhHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCC------HHHHHH-HHHHCC
Confidence 66666664321 1 12233333344445566666667887654322 1245677775433 224444 456789
Q ss_pred eEEeCCCCCCCCCCCeEEEEee-cCCHHHHHHHHHHHHHHHHhh
Q 043923 389 LNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 389 I~v~pg~~f~~~~~~~iRi~~~-~~~~e~i~~~l~~L~~~l~~~ 431 (469)
|.+.+|. +......+||+.- ..++++++.++++|++++++.
T Consensus 306 i~i~~G~--~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 306 AVIAGGQ--GPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp EECEECC--GGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEcCc--cccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9998885 3334568999764 469999999999999999864
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=6.8e-15 Score=144.31 Aligned_cols=303 Identities=11% Similarity=0.085 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEEccCCCcCh--HHHHhhhCCCEEEEee
Q 043923 90 AFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA---EPGEAFLLPTPYYPGF--DRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 90 ~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~---~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~v~ 164 (469)
++.+.+.+.+++.++...+.+++.|++|+|+|+++++++..+. ++||.|++..-.+... ...++.. |..+..+.
T Consensus 36 ~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (382)
T d2bkwa1 36 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVDVVR 114 (382)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccc-cccccccc
Confidence 3333344444444432223467789999999999999999986 6799999987665432 2223444 77776665
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccccccccCCCC
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEK--NIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~--~~~iI~Deay~~~~~~~~~ 242 (469)
..+ .+...+.+.+++.+.. .++++++++.-+|.||...+.++ +.+.|+++ ++++++|.+.+ ++..+
T Consensus 115 ~~~-~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~tg~~~~~~~---~~~~~~~~~~~~~~~vDa~qs---~g~~p 182 (382)
T d2bkwa1 115 PLK-IGESVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSDLKA---ISQAIKQTSPETFFVVDAVCS---IGCEE 182 (382)
T ss_dssp CSS-TTSCCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECCHHH---HHHHHHHHCTTSEEEEECTTT---TTTSC
T ss_pred ccC-CCCccchhHHHHHhhh-----ccchheeeeeccccccccccchh---hhhhccccccceeeeeecccc---ccccc
Confidence 332 3445677888877764 27888999989999999999777 55555554 69999999997 44432
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCcccc-CCCcceEEEEEecCHHHHHHHHH----------------------h-
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATK----------------------M- 298 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~GlRiG~li~~~~~~~~~~~~----------------------~- 298 (469)
..+. ..+..+++.|..|.+ |.+| +|+++..++.+...... .
T Consensus 183 -id~~------------~~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (382)
T d2bkwa1 183 -FEFD------------EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYE 247 (382)
T ss_dssp -CCTT------------TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHH
T ss_pred -cccc------------ccCeeEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccc
Confidence 2222 235678888999999 4455 88888865543321100 0
Q ss_pred ----cccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee---cCC--ceEEEEEeccccc
Q 043923 299 ----SSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCL---KSN--AGLFCWVDMRHLL 368 (469)
Q Consensus 299 ----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~---~~~--~g~~~~v~~~~~~ 368 (469)
..+++++....+++..+|+... ..-.+...++.++..+++.+.+... ++... ++. ....+.+.+++.
T Consensus 248 ~~~~~~~~Tp~~~~i~al~~aL~~~~--~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~- 324 (382)
T d2bkwa1 248 AGKGAYFATPPVQLINSLDVALKEIL--EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADP- 324 (382)
T ss_dssp TTCCCCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCH-
T ss_pred ccccccccCCcHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCH-
Confidence 1123345545555555543211 2223445555566667777777654 33222 111 112234555532
Q ss_pred ccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEE-eecC-CHHHHHHHHHHHHHHHHhhcc
Q 043923 369 RSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC-FANM-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 369 ~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~-~~~~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.+ +..+|+++||.+.+|... ..+.+.+||+ ++.. ++++++.+++.|..+.+.+++
T Consensus 325 --------~~-~~~~L~~~gi~i~~G~~~-~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 325 --------PD-VIAFLKSHGVVIAGGIHK-DIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp --------HH-HHHHHHHTTEECBCCCCT-TTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred --------HH-HHHHHHHCCeEEECCCCh-hhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 12 344567889999988532 1235689998 6543 567777787777776666654
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=3.5e-14 Score=138.77 Aligned_cols=210 Identities=20% Similarity=0.237 Sum_probs=148.2
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHh----hhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLK----WRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~----~~~g~~~~~v 163 (469)
...|.++||...+ .+..++++++..|+..++.+++++||.|++....|.+....+. .. |+++..+
T Consensus 60 ~~~LE~~la~LE~----------~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~-gi~~~~~ 128 (421)
T d2ctza1 60 VDVLEKRLAALEG----------GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL-GIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHT-TCEEEEC
T ss_pred HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhc-cccceec
Confidence 4677777777764 5667889999999999999999999999999999987665543 34 9998877
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecccc-ccccCCCC
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYS-GTVFSSPG 242 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~-~~~~~~~~ 242 (469)
..+. ..+..+..+++ ++++|++.+|.|||..+.+ +++|+++|+++|+.+|+|..++ .. +...
T Consensus 129 d~~~------~~~~~~~~~~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP-~~~~- 191 (421)
T d2ctza1 129 SREE------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-YLLR- 191 (421)
T ss_dssp CTTC------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-TSCC-
T ss_pred cccc------CcchhccccCC------CceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccc-eecc-
Confidence 5431 23444444443 8999999999999999988 5558889999999999999986 22 1111
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHH-------------------------------
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDM------------------------------- 290 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~------------------------------- 290 (469)
.. ..+-.|++.|.+|.+|-.| +=.|.++..+..
T Consensus 192 ---Pl------------~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (421)
T d2ctza1 192 ---PL------------AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAF 256 (421)
T ss_dssp ---GG------------GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHH
T ss_pred ---cc------------ccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHH
Confidence 11 2356789999999995333 445666653321
Q ss_pred HHHHH-HHhcccc-cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 291 VVAAA-TKMSSFG-LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 291 ~~~~~-~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+.+.. ...+..+ .+++...+.+.+-|++. .-+.++..++...+.+.|+++
T Consensus 257 ~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL-------~lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 257 IVKARVDGLRDQGQALGPFEAWVVLLGMETL-------SLRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp HHHHHHTHHHHHCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHhcCCcch-------hhHHHHHHHHHHHHHhhhccC
Confidence 11111 1112233 36777877777777763 445666677888899999987
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.66 E-value=3.5e-15 Score=150.36 Aligned_cols=322 Identities=12% Similarity=-0.006 Sum_probs=174.9
Q ss_pred CCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEE
Q 043923 82 FQDYHGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIV 161 (469)
Q Consensus 82 Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~ 161 (469)
+.+..-+.++++.+|++++ ..+.+++++|++.++.+++.++++|||.|+++.-+|......+....+..++
T Consensus 62 ~~~~~~i~eae~~~A~~~g---------a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~ 132 (462)
T d1c4ka2 62 LIHEGPAVAAEKHAARVYN---------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPV 132 (462)
T ss_dssp TTTBTHHHHHHHHHHHHTT---------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhC---------CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCce
Confidence 3344447889999999986 2345666788888999989999999999999999998877655443244444
Q ss_pred E--eeccCCCC-c-----ccCHHHHHHHHHH---HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEe
Q 043923 162 P--IQCTSLNG-F-----QITETAIEEAYQL---AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISD 230 (469)
Q Consensus 162 ~--v~~~~~~~-~-----~~d~~~l~~~i~~---~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~D 230 (469)
. ++.++.+. . .++.+.++..+.. ......++..+++...+|-+|.+.+. ++|+++|++||+++++|
T Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl---~~I~~ia~~~g~~l~vD 209 (462)
T d1c4ka2 133 YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNA---HEVVKRIGHLCDYIEFD 209 (462)
T ss_dssp EECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECH---HHHHHHHGGGBSEEEEE
T ss_pred eeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhH---HHHHHHHHHcCCEEEEe
Confidence 3 34443221 1 1222222222110 01112344545555555668999885 45889999999999999
Q ss_pred ccccccccCCCCc-cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH------------HHHHHH
Q 043923 231 EIYSGTVFSSPGF-VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV------------VAAATK 297 (469)
Q Consensus 231 eay~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~------------~~~~~~ 297 (469)
++++......+.. .+........ .-..+..+++.|++|++|.++. .+++...+..+ .+....
T Consensus 210 ~A~~~~~~~~~~~~~~~~~~g~~~----~~~~~~D~~~~S~HK~lg~~~~-g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (462)
T d1c4ka2 210 SAWVGYEQFIPMMRNSSPLLIDDL----GPEDPGIIVVQSVHKQQAGFSQ-TSQIHKKDSHIKGQLRYCDHKHFNNSFNL 284 (462)
T ss_dssp CTTCCGGGSSGGGGGGCTTSCCCC----CTTSCEEEEEECHHHHSSCCTT-CEEEEEECGGGTTSTTCCCHHHHHHHHHH
T ss_pred chhhccccccCcCCcchhhccccc----cccCCccEEEEecCcccccccc-eEEEEeccccccccchhhhHHHHHHhhhh
Confidence 9997432111110 1111110000 0022457889999999985442 23443333222 111111
Q ss_pred hcccccCcHHHHHHH---HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCce-ec--------------------
Q 043923 298 MSSFGLVSSQTQYLL---SALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISC-LK-------------------- 353 (469)
Q Consensus 298 ~~~~~~~s~~~q~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v-~~-------------------- 353 (469)
..+ +..+......+ ...+.. ...++..++..++.+++++.+.+.+... ..
T Consensus 285 ~~t-~sp~~~~~asl~~a~~~~~~-----~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 358 (462)
T d1c4ka2 285 FMS-TSPFYPMYAALDVNAAMQEG-----EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMAN 358 (462)
T ss_dssp HSC-SSCCHHHHHHHHHHHHHHSH-----HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTT
T ss_pred ccc-CCchHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhc
Confidence 221 22333322222 222222 2234445555556677777776652110 00
Q ss_pred -------------------CCceEE-----EEEecccccccC-----ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCe
Q 043923 354 -------------------SNAGLF-----CWVDMRHLLRSN-----TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 404 (469)
Q Consensus 354 -------------------~~~g~~-----~~v~~~~~~~~~-----~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~ 404 (469)
....+. +.+..+...... .-... ......|+++||.+.-. +.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~-~~~~~~L~~~gI~~e~~------~~~~ 431 (462)
T d1c4ka2 359 NIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPA-TIVANYLRDHGIIPEKS------DLNS 431 (462)
T ss_dssp CGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCH-HHHHHHHHHTTCCCSEE------CSSE
T ss_pred ccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcH-HHHHHHHHHcCCeeecc------CCCe
Confidence 000000 223333211000 00011 23445567889865321 2567
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHHHhhcc
Q 043923 405 FRVCFAN-MSEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 405 iRi~~~~-~~~e~i~~~l~~L~~~l~~~~~ 433 (469)
+|++++. .|+++++.++++|+++.+.+.+
T Consensus 432 i~~~~s~~~T~edid~li~aL~ei~r~~~~ 461 (462)
T d1c4ka2 432 ILFLMTPAETPAKMNNLITQLLQLQRLIEE 461 (462)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999976 4999999999999999887765
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.66 E-value=6.3e-14 Score=136.37 Aligned_cols=209 Identities=14% Similarity=0.198 Sum_probs=152.9
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH----HhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD----LKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~~~v 163 (469)
...|.+.||+.-+ .+..++++++..|+..++.+++++||.|++.+..|.+.... +... |+++..+
T Consensus 61 ~~~le~~la~LEg----------~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~-gi~~~~~ 129 (394)
T d1e5ea_ 61 VSNLEGKIAFLEK----------TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFI 129 (394)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHhC----------CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhcc-ceeeecc
Confidence 4667777777653 56778889999999999999999999999999999776444 3344 9999888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHH-hcCeEEEEeccccccccCCCC
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIIT-EKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~-~~~~~iI~Deay~~~~~~~~~ 242 (469)
+.. |++.+++++++ ++++|++..|.||+..+.+.+. +++.++ ++|+++|+|..++..++
T Consensus 130 d~~-------d~~~~~~~i~~------~t~lv~~Etp~NP~l~v~Di~~---~~~~~~~~~g~~vvvDnT~atP~~---- 189 (394)
T d1e5ea_ 130 NTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIIDMER---VCKDAHSQEGVLVIADNTFCSPMI---- 189 (394)
T ss_dssp CTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCCHHH---HHHHHHTSTTCEEEEECTTTCTTT----
T ss_pred CCC-------CHHHHHHhhcc------cccEEEEeccCCcceeeehhhh---hhhccccccCeEEEecCcccCccc----
Confidence 753 55778888765 8999999999999999998554 666554 56899999999874322
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHH-HHhcc-cc-cCcHHHHHHHHHHhcC
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAA-TKMSS-FG-LVSSQTQYLLSALLSD 318 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~-~~~~~-~~-~~s~~~q~~~~~~l~~ 318 (469)
....++ +-.|++.|.+|.++ ...+-.|.++++++.+.... ...+. .+ .+++...+.+.+-|++
T Consensus 190 -~~Pl~~------------GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T 256 (394)
T d1e5ea_ 190 -TNPVDF------------GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST 256 (394)
T ss_dssp -CCGGGG------------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT
T ss_pred -CCchhc------------CCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh
Confidence 122222 56789999999884 34456677777555443322 22222 23 3677887878777776
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
. .-+.++..++...+.+.|+++
T Consensus 257 L-------~lRm~r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 257 L-------NIRMKAESENAMKVAEYLKSH 278 (394)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred H-------HHHHHHHHHHHHHHHHHHhhc
Confidence 3 455667777888999999987
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=1.3e-14 Score=145.84 Aligned_cols=315 Identities=13% Similarity=0.140 Sum_probs=209.2
Q ss_pred CcHHHHHHHHHHHHhHcCCCCC-----CCCCcEEEeCChHHHHHHHHHHhcC----------CC---------CEEEEcc
Q 043923 87 GLPAFKKALVEFMSEIRGNKVT-----FDTSKIVLTAGATSANETLMFCLAE----------PG---------EAFLLPT 142 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~-----~~~~~i~~t~G~~~al~~~~~~l~~----------~g---------d~Vl~~~ 142 (469)
...+++..+.+++.+.+|..-. .....-++|+|+++++..++.+... .| -.|++.+
T Consensus 110 ~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~ 189 (476)
T d1js3a_ 110 ACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASD 189 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEET
T ss_pred hHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecc
Confidence 4478889999999988774211 1123568999999999988865421 11 2577788
Q ss_pred CCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHh
Q 043923 143 PYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITE 222 (469)
Q Consensus 143 P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~ 222 (469)
-+|.++..++... |+.++.+|.+ .++.+|+++|+++|++....+..+-+|+.+..++.||.+=|.+ +|+++|++
T Consensus 190 ~~H~Si~ka~~~l-Gl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~---~I~~i~~~ 263 (476)
T d1js3a_ 190 QAHSSVERAGLIG-GVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLL---EVGPICHE 263 (476)
T ss_dssp TCCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH---HHHHHHHH
T ss_pred cccHHHHHHHHhc-CceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHH---HHHHHHHh
Confidence 8888899888888 9999999987 4678999999999998766666777888888899999998855 58889999
Q ss_pred cCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHH-----
Q 043923 223 KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK----- 297 (469)
Q Consensus 223 ~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~----- 297 (469)
|++++++|.||+++..-.........-++ .-.-+..+++|.++ ....+|.++..+.........
T Consensus 264 ~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~----------~aDSit~d~HK~l~-~P~~~g~~l~r~~~~~~~~~~~~~~~ 332 (476)
T d1js3a_ 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVE----------FADSFNFNPHKWLL-VNFDCSAMWVKRRTDLTGAFKLDPVY 332 (476)
T ss_dssp TTCEEEEECTTGGGGGGSTTTGGGGTTGG----------GCSEEEECHHHHSS-CCSSCEEEEESCHHHHHGGGC-----
T ss_pred cCcEEEEecccchhhhhhcchhhhhcCCc----------ccceeeecCccccc-cCCcceeecccchHHHHHHHhcChhh
Confidence 99999999999876433332222222221 23344558999987 445788888866543221100
Q ss_pred ---h----------cccc-----cCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceE
Q 043923 298 ---M----------SSFG-----LVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGL 358 (469)
Q Consensus 298 ---~----------~~~~-----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~ 358 (469)
. ..+. ....+..+++...+. .+-+++..++..+..+++.+.+++. ++++..+..-.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G-----~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~ 407 (476)
T d1js3a_ 333 LKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG 407 (476)
T ss_dssp -------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSS
T ss_pred hccccccccccccccccccccchhhHHHHHHHHHHHHh-----HhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceE
Confidence 0 0000 011233333333332 3334666666667778899999887 78776554435
Q ss_pred EEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhh
Q 043923 359 FCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 359 ~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~--~~~e~i~~~l~~L~~~l~~~ 431 (469)
.+.+++.... .....+.+++.++-.+.+.+... .+..++|+++.. .++++++.+++.|+++.++.
T Consensus 408 iV~Fr~~~~d-----~~n~~l~~~l~~~G~~~~s~t~~---~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 408 LVCFRLKGSD-----GLNEALLERINSARKIHLVPCRL---RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp EEEEEESSCH-----HHHHHHHHHHHHHTSCBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCh-----HHHHHHHHHHHhcCCEEEeeeeE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5667765311 12235667766553354443221 234489999974 37899999999999987764
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.63 E-value=2.1e-13 Score=133.34 Aligned_cols=343 Identities=15% Similarity=0.103 Sum_probs=214.6
Q ss_pred CeeeeeccccccChHHHHHHHhc-CCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCCc--E-
Q 043923 39 GIIQMGLAENQLSFDLLESWLDR-NPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTSK--I- 114 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~~--i- 114 (469)
..|+|-..||..++.. .+++.. ...... +| +..-+-|....-+++++....+...+.|+ .+++. +
T Consensus 32 ~~l~LIaSEN~~S~~v-~~algS~l~nkYa---eG---~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----~~~~~~~an 100 (470)
T d1rv3a_ 32 VGLELIASENFASRAV-LEALGSCLNNKYS---LG---YPGQRYYGGTEHIDELETLCQKRALQAYG----LDPQCWGVN 100 (470)
T ss_dssp SSEECCTTCCCCCHHH-HHHHTSGGGTCCC---CE---ETTEESSSCCHHHHHHHHHHHHHHHHHTT----CCTTTEEEE
T ss_pred cCceEecCCCcCCHHH-HHHhcchhccccc---CC---CCCccccCCchhHHHHHHHHHHHHHHHhC----CChhhcccc
Confidence 4589988898877643 333333 111100 11 11222344444455666556566666665 33332 1
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----------hhhCCCEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 115 VLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----------KWRTGVEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 115 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----------~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
+-..+++.|..+++.+|++|||+|+..+....++...- ... ..+.+.++++.+ ...+|.+++++...+
T Consensus 101 Vqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~-~~~~~~y~v~~~-~~~IDyd~l~~~a~~ 178 (470)
T d1rv3a_ 101 VQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSI-FFESMAYKVNPD-TGYIDYDRLEENARL 178 (470)
T ss_dssp CCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH-HSEEEEECBCTT-TCSBCHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccc-eeEeeEEEEecc-cCcccHHHHHHHHHh
Confidence 23456777888889999999999999887766553221 111 357788888764 457999999999887
Q ss_pred HHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeE
Q 043923 185 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRV 264 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 264 (469)
. ++++|++....+|- .++ .+++.++|.+.|.+++.|-+|......+..+++.... -.
T Consensus 179 ~-----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-------------aD 235 (470)
T d1rv3a_ 179 F-----HPKLIIAGTSCYSR--NLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-------------CH 235 (470)
T ss_dssp H-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-------------CS
T ss_pred h-----CcceEeechhhccc--cCC---HHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-------------ee
Confidence 6 89987776444443 345 5557777779999999999996433333334454433 24
Q ss_pred EEEccCccccCCCcceEEEEEecCH--------------HHHHHHHHhcccccC-cH-HHHHHH-HHHhcCchhhHHHHH
Q 043923 265 HIVYSLSKDLGLPGFRVGAIYSNDD--------------MVVAAATKMSSFGLV-SS-QTQYLL-SALLSDKKFTQNYIS 327 (469)
Q Consensus 265 i~i~S~SK~~g~~GlRiG~li~~~~--------------~~~~~~~~~~~~~~~-s~-~~q~~~-~~~l~~~~~~~~~~~ 327 (469)
++.+|.+|+| +|-|-|.|++.+. .+.+.+.+..-++.. ++ +...++ +.++... .....+
T Consensus 236 vvt~tTHKtl--rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea--~~~~fk 311 (470)
T d1rv3a_ 236 VVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFK 311 (470)
T ss_dssp EEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHH
T ss_pred eeeeehhhhc--cCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHh--cChHHH
Confidence 7788999998 7888899988543 244445443322221 11 222221 1122211 122235
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecccc-cccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCCC
Q 043923 328 ENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHL-LRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTE 401 (469)
Q Consensus 328 ~~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~~~~-~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~~ 401 (469)
...+++.++.+.|.+.|.+.|+++.. ...+..+++++... ... ..++++|++.||.+. |+.. .+..
T Consensus 312 ~Ya~qvv~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g-------~~ae~~Le~~gI~~Nkn~iP~D~-~~~~ 383 (470)
T d1rv3a_ 312 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDG-------GRAEKVLEACSIACNKNTCPGDK-SALR 383 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCH-------HHHHHHHHHTTEECEEECCSSCS-CTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCCceeccCCCCCceEEEeecccCCcH-------HHHHHHHHHcCcEECCCcCCCCC-CCCC
Confidence 56667777889999999999998863 34456778888642 111 346778889999885 5553 2233
Q ss_pred CCeEEEEeec-----CCHHHHHHHHHHHHHHHH
Q 043923 402 PGWFRVCFAN-----MSEDTLKLSMQRLKAFVD 429 (469)
Q Consensus 402 ~~~iRi~~~~-----~~~e~i~~~l~~L~~~l~ 429 (469)
++.+||+... ..++++.++.+-|.++++
T Consensus 384 ~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 384 PSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp CCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 5679998843 478999999999988875
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.63 E-value=1e-13 Score=135.08 Aligned_cols=343 Identities=14% Similarity=0.127 Sum_probs=198.6
Q ss_pred CeeeeeccccccChHHHHHHHhc-CCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCCCC----c
Q 043923 39 GIIQMGLAENQLSFDLLESWLDR-NPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFDTS----K 113 (469)
Q Consensus 39 ~~i~L~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~~~----~ 113 (469)
..|+|-..||..++.. .+++.. ...... +| +..-+-|....-.++++....+...+.|+ ++.. +
T Consensus 28 ~~l~LiaSEN~~S~~v-~~algS~l~nkYa---eG---~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----~~~a~w~vN 96 (463)
T d2a7va1 28 RGLELIASENFCSRAA-LEALGSCLNNKYS---EG---YPGKRYYGGAEVVDEIELLCQRRALEAFD----LDPAQWGVN 96 (463)
T ss_dssp HSEECCTTCCCCCHHH-HHHHTSGGGTCCC---CC---------------CTHHHHHHHHHHHHHTT----CCTTTEEEE
T ss_pred cCeeEeccCCcCCHHH-HHHhcchhccccc---CC---CCCccccCCchhHHHHHHHHHHHHHHHhC----CCchhccCC
Confidence 3488888888877643 333332 111100 11 11122344444466776666666666665 4444 3
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHH--------HhhhCCC--EEEEeeccCCCCcccCHHHHHHHHH
Q 043923 114 IVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRD--------LKWRTGV--EIVPIQCTSLNGFQITETAIEEAYQ 183 (469)
Q Consensus 114 i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~ 183 (469)
|-. .+++.|..+++.+|++|||+|+..++...++..- .... |. +.+++.+++ .+..+|.+++++...
T Consensus 97 Vqp-~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~-g~~~~~~~Y~~d~-~~~~IDyd~~~~~a~ 173 (463)
T d2a7va1 97 VQP-YSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT-SIFFESMPYKLNP-KTGLIDYNQLALTAR 173 (463)
T ss_dssp CCC-SSHHHHHHHHHHHHCCSCEECCC--------------------------------CCBCT-TTCSBCHHHHHHHHH
T ss_pred ccc-cccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccce-eeEeeeeeeeccC-CCCcCcHHHHHHHHh
Confidence 444 4566777888899999999999988877665411 1111 33 344555554 345689999999988
Q ss_pred HHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCe
Q 043923 184 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNR 263 (469)
Q Consensus 184 ~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (469)
+. ++++|++....+|- .++ .+++.++|.+.|.+++.|-+|......+..+++.... -
T Consensus 174 ~~-----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-------------a 230 (463)
T d2a7va1 174 LF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-------------A 230 (463)
T ss_dssp HH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-------------C
T ss_pred hc-----CCceEEeccccccc--ccC---HHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-------------h
Confidence 76 99988876544443 344 5567777789999999999996443344444554433 2
Q ss_pred EEEEccCccccCCCcceEEEEEecCH--------------HHHHHHHHhcccccC-cH-HHHHHH-HHHhcCchhhHHHH
Q 043923 264 VHIVYSLSKDLGLPGFRVGAIYSNDD--------------MVVAAATKMSSFGLV-SS-QTQYLL-SALLSDKKFTQNYI 326 (469)
Q Consensus 264 ~i~i~S~SK~~g~~GlRiG~li~~~~--------------~~~~~~~~~~~~~~~-s~-~~q~~~-~~~l~~~~~~~~~~ 326 (469)
.++.+|.+|+| +|-|-|.|++.+. .+.+.+.+..-++.. ++ +...++ +.++.. ......
T Consensus 231 Dvvt~tTHKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~e--a~~~~f 306 (463)
T d2a7va1 231 DIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ--ACTPMF 306 (463)
T ss_dssp SEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH--HHSHHH
T ss_pred hhhhchhhhhh--cCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHH--hcCchH
Confidence 47778999998 8889999988642 334444433222221 12 222211 112211 112224
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecccc-cccCChhHHHHHHHHHHHhCCeEEe----CCCCCCCC
Q 043923 327 SENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHL-LRSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCT 400 (469)
Q Consensus 327 ~~~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~~~~-~~~~~~~~~~~l~~~ll~~~GI~v~----pg~~f~~~ 400 (469)
+...+++.++.+.|.+.|.+.|+++.. ...+..+++++... ... ..++..|++.||.+. |+.. .+.
T Consensus 307 k~Ya~qVv~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~G-------~~ae~~Le~~gI~~Nkn~iP~D~-~~~ 378 (463)
T d2a7va1 307 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDG-------ARAERVLELVSITANKNTCPGDR-SAI 378 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCH-------HHHHHHHHHTTEECEEECCTTCC-CSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCCH-------HHHHHHHHhccCccCCccCCCCC-CCC
Confidence 555667777889999999999998864 34456778888542 222 346777889999886 5542 222
Q ss_pred CCCeEEEEeec-----CCHHHHHHHHHHHHHHHHh
Q 043923 401 EPGWFRVCFAN-----MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 401 ~~~~iRi~~~~-----~~~e~i~~~l~~L~~~l~~ 430 (469)
.++.|||+... ..++++.++.+-|.++++.
T Consensus 379 ~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~~ 413 (463)
T d2a7va1 379 TPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 413 (463)
T ss_dssp SCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 35679999843 4679999999999888753
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=4.5e-14 Score=137.20 Aligned_cols=208 Identities=14% Similarity=0.176 Sum_probs=144.8
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhh---CCCEEEEee
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWR---TGVEIVPIQ 164 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~---~g~~~~~v~ 164 (469)
...|.++|++..+ .+..++++++..|+..+ ..++.+||.|++....|.+....+... .|+++..++
T Consensus 57 ~~~lE~~la~LE~----------~~~a~~~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~ 125 (393)
T d1n8pa_ 57 RENLERAVAALEN----------AQYGLAFSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred HHHHHHHHHHHhC----------CceEEEecCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee
Confidence 4566666666543 45667777778898765 466789999999999998876555432 277665553
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHH----hcCeEEEEeccccccccCC
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIIT----EKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~----~~~~~iI~Deay~~~~~~~ 240 (469)
.+.+++++++++ ++++|++..|.||+..+.+.+. ++++|+ ++|+++|+|..++..++-.
T Consensus 126 --------~~~~~~~~~i~~------~t~lv~~EspsNP~l~v~Di~~---ia~~a~~~~~~~g~~lvVDnT~atP~~~~ 188 (393)
T d1n8pa_ 126 --------DLLNDLPQLIKE------NTKLVWIETPTNPTLKVTDIQK---VADLIKKHAAGQDVILVVDNTFLSPYISN 188 (393)
T ss_dssp --------SHHHHHHHHSCS------SEEEEEECSSCTTTCCCCCHHH---HHHHHHHHTTTTTCEEEEECTTTHHHHCC
T ss_pred --------cchHHHHHHhhh------hcceeEecCcchhhhhccchhh---hhhhhhhhcccCCceEEEecCccCcccCC
Confidence 134667777654 9999999999999999999555 666665 7899999999997543221
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccC-CCcceEEEEEecCHHHHHHHHHhc-ccc-cCcHHHHHHHHHHhc
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMS-SFG-LVSSQTQYLLSALLS 317 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~GlRiG~li~~~~~~~~~~~~~~-~~~-~~s~~~q~~~~~~l~ 317 (469)
+ . ..+-.|++.|++|.++ ...+-.|.++..+..+.+.++..+ ..+ .+++...+.+.+-++
T Consensus 189 P-----l------------~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~ 251 (393)
T d1n8pa_ 189 P-----L------------NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK 251 (393)
T ss_dssp G-----G------------GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred c-----h------------hhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCc
Confidence 1 1 2256689999999984 444667888776666655444433 233 367777777777777
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKA 347 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 347 (469)
+. .-+.++..++...+.+.|+.+
T Consensus 252 Tl-------~lR~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 252 TL-------HLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp TH-------HHHHHHHHHHHHHHHHHHTSC
T ss_pred ch-------hhHHHHHHHHHHHHHHHHHhc
Confidence 63 445566667778888888754
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.62 E-value=1.2e-13 Score=135.36 Aligned_cols=292 Identities=14% Similarity=0.181 Sum_probs=186.2
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeec
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQC 165 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (469)
-..++++.+|++++ ...++.++++|.|+.+++.++ +++||+|+++..+|......+... |.+++.+++
T Consensus 35 ~v~~fE~~~a~~~g----------~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~~-g~~p~~~d~ 103 (384)
T d1b9ha_ 35 EVNSFEREFAAHHG----------AAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAVTVPVDV 103 (384)
T ss_dssp HHHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECB
T ss_pred HHHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccccccc-ccccccccc
Confidence 36888899998875 557889999999999999998 689999999999999888888877 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccc-cCCCCcc
Q 043923 166 TSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTV-FSSPGFV 244 (469)
Q Consensus 166 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~-~~~~~~~ 244 (469)
+. ..+.+|++.+++.+++ ++++|++ .+..|.... +.++.++|+++++.+|+|.+++... +.+.
T Consensus 104 ~~-~~~~~d~~~~~~~i~~------~tk~i~~---~~~~g~~~d---~~~i~~~~~~~~i~lieD~a~a~ga~~~g~--- 167 (384)
T d1b9ha_ 104 DA-ATYNLDPEAVAAAVTP------RTKVIMP---VHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQGK--- 167 (384)
T ss_dssp CT-TTCCBCHHHHHHHCCT------TEEEECC---BCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE---
T ss_pred cc-cccccchhhhcccccc------ccccccc---ccccccccc---cccchhhhhhhhhhhhhhhceecccccCCE---
Confidence 74 5678999999988765 8888764 466676665 5568889999999999999997321 1111
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhccc-------------------ccCc
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF-------------------GLVS 305 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~-------------------~~~s 305 (469)
.... ..+-.++-.+.+|.++ .| .-|.++++++.+.+.++.+... ..++
T Consensus 168 ~~g~-----------~g~~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms 234 (384)
T d1b9ha_ 168 RVGE-----------LDSIATFSFQNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLN 234 (384)
T ss_dssp EGGG-----------SSSCEEEECCTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCB
T ss_pred ecCc-----------ccccceeccccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccc
Confidence 1111 1133444455689886 33 3588888777665554433211 1134
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec----CC--ceEEEEEecccccccCChhHHHH
Q 043923 306 SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK----SN--AGLFCWVDMRHLLRSNTFEAEME 378 (469)
Q Consensus 306 ~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~----~~--~g~~~~v~~~~~~~~~~~~~~~~ 378 (469)
.+....+..-|+. +++..++-+++.+++.+.|.+. ++.... .. ..++..+.++.... ....+
T Consensus 235 ~l~Aaig~~qL~~-------ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Rd~ 303 (384)
T d1b9ha_ 235 EFSASVLRAQLAR-------LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE----ERRNA 303 (384)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH----HHHHH
T ss_pred cchhhhhhhhhhh-------cccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc----ccHHH
Confidence 4443334444433 2333333344556677778765 443221 11 11223344432111 22234
Q ss_pred HHHHHHHhCCeEEeCCCC----------CCCCC-----------------CCeEEEEeec-CC-HHHHHHHHHHHHHHHH
Q 043923 379 LWKKIVYDVKLNISPGSS----------CHCTE-----------------PGWFRVCFAN-MS-EDTLKLSMQRLKAFVD 429 (469)
Q Consensus 379 l~~~ll~~~GI~v~pg~~----------f~~~~-----------------~~~iRi~~~~-~~-~e~i~~~l~~L~~~l~ 429 (469)
+.+.| +++||.+++... ++... ...+.|-+.. ++ +++++..++.|+++++
T Consensus 304 l~~~L-~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~ 382 (384)
T d1b9ha_ 304 LVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 382 (384)
T ss_dssp HHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 66665 577998875421 00000 1246666543 45 6799999999999886
Q ss_pred h
Q 043923 430 S 430 (469)
Q Consensus 430 ~ 430 (469)
+
T Consensus 383 ~ 383 (384)
T d1b9ha_ 383 R 383 (384)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.1e-14 Score=140.37 Aligned_cols=332 Identities=15% Similarity=0.085 Sum_probs=194.2
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ .+.+. .+.+.+++++..+. ......+....-...+.+.+++.. .
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~----------~~~~~~~~~~~~~~~~~~~~~~~~----------~ 97 (404)
T d2byla1 38 VEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDK----------LTLTSRAFYNNVLGEYEEYITKLF----------N 97 (404)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT----------CCCCCTTEEESSHHHHHHHHHHHH----------T
T ss_pred CCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhh----------CCCcccccccchHHHHHHhhhhcc----------c
Confidence 344568998875 44443 46677776653111 111111111122334445444443 3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------CCCCEEEEccCCCcChHHHHhhhCC------------CEEEEeeccCC
Q 043923 111 TSKIVLTAGATSANETLMFCLA----------EPGEAFLLPTPYYPGFDRDLKWRTG------------VEIVPIQCTSL 168 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~----------~~gd~Vl~~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~ 168 (469)
.+.+++++++++|...+++... .....++...-.|...........+ ..+..+|.
T Consensus 98 ~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~--- 174 (404)
T d2byla1 98 YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY--- 174 (404)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT---
T ss_pred ccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc---
Confidence 5789999999999999998752 1224666666666543322211101 12333343
Q ss_pred CCcccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 169 NGFQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLG-TTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 169 ~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG-~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
.|++++++.+.+ +++.+|++ .| ....| ...+.+-+++|.++|++||+++|.||+..++.-.+.. ..
T Consensus 175 ----~d~~~l~~~l~~-----~~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~-~a- 242 (404)
T d2byla1 175 ----NDLPALERALQD-----PNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW-LA- 242 (404)
T ss_dssp ----TCHHHHHHHHTS-----TTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SG-
T ss_pred ----cCHHHHHHhcCC-----CCeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccccc-ch-
Confidence 267888888753 36666555 46 44456 5578889999999999999999999999874222222 11
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhH
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQ 323 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~ 323 (469)
.+... ..+.++ +++|.+| .| +.+|.+++. +.+.+.+.... ..+..++++..++.+.|+..+-
T Consensus 243 ~~~~g--------v~PDi~---~~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-- 307 (404)
T d2byla1 243 VDYEN--------VRPDIV---LLGKALS-GGLYPVSAVLCD-DDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEE-- 307 (404)
T ss_dssp GGGGT--------CCCSEE---EECGGGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--
T ss_pred hhhcC--------CCCCEE---EECchhh-CCCccceeeeec-hhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHh--
Confidence 11211 223333 7899998 66 899999994 44444332221 1122567777777666653221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceec--CCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCC
Q 043923 324 NYISENKKRLKQRHRKLVSGLEKAGISCLK--SNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 401 (469)
Q Consensus 324 ~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~--~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~ 401 (469)
+...+..++.-+++.+.|.++.-++.. ...|++..+.+..... ....+++.+++ ++||++.|..
T Consensus 308 ---~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~----~~~~~~~~~l~-~~Gvl~~~~~------ 373 (404)
T d2byla1 308 ---ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----WDAWKVCLRLR-DNGLLAKPTH------ 373 (404)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSS----CCHHHHHHHHH-HTTEECEEEE------
T ss_pred ---cCchhhhhHhhHHHHHHHHhhccccceeeeecccEEEEEEecCCc----hhHHHHHHHHH-hCCeEEecCC------
Confidence 123334444556677777765211111 1224555566543221 12335666666 5699988631
Q ss_pred CCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 402 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 402 ~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+.+|++... ++++++++++++|++++++
T Consensus 374 ~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 374 GDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 3579998765 4999999999999999976
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.60 E-value=9.2e-14 Score=138.03 Aligned_cols=336 Identities=13% Similarity=0.137 Sum_probs=189.5
Q ss_pred CCCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCC
Q 043923 34 VQNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTF 109 (469)
Q Consensus 34 ~~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~ 109 (469)
+.....+||+..+ .+.+. .|.+.+++++.. .....+.. ...+...+++.+....+
T Consensus 48 D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~-------------~~~~~~~~---~~~~~~~la~~~~~~~~----- 106 (427)
T d2gsaa_ 48 DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM-------------EKGTSFGA---PCALENVLAEMVNDAVP----- 106 (427)
T ss_dssp ETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHH-------------TTCSCCSS---CCHHHHHHHHHHHHHST-----
T ss_pred ECCCCEEEEechhHHHHhccCCcHHHHHHHHHHH-------------HhcCcccc---chhHHHHHHHHHHhhCC-----
Confidence 3445678999766 45554 466777776531 11111111 13455667777765432
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhC-------CC------------EEEEeeccCC
Q 043923 110 DTSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRT-------GV------------EIVPIQCTSL 168 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~-------g~------------~~~~v~~~~~ 168 (469)
..+.+++++++++|++.+++... .....|+.....|++....+.... +. +...++.
T Consensus 107 ~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--- 183 (427)
T d2gsaa_ 107 SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY--- 183 (427)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT---
T ss_pred ccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc---
Confidence 35789999999999999998753 244678888888876532221110 11 1222221
Q ss_pred CCcccCHHHHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccch
Q 043923 169 NGFQITETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSI 246 (469)
Q Consensus 169 ~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~ 246 (469)
.|++.+++.+++. ..++.+|++ -| ..-.|. ..|.+-+++|.++|++||+++|.||++.++ ..... ..
T Consensus 184 ----~~~~~le~~~~~~---~~~iaavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~--r~g~~-~~ 252 (427)
T d2gsaa_ 184 ----NDLEAVKALFAEN---PGEIAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF--RIAYG-GV 252 (427)
T ss_dssp ----TCHHHHHHHHTTS---TTTEEEEEE-CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT--TTBTT-CH
T ss_pred ----chHHHHHHHHHhC---CCCeEEEEE-cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc--eeccc-ch
Confidence 3788888887641 225666555 46 333464 567788999999999999999999999874 22221 22
Q ss_pred hhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc-----ccccCcHHHHHHHHHHhc---C
Q 043923 247 MEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-----SFGLVSSQTQYLLSALLS---D 318 (469)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~---~ 318 (469)
.+... ..+.++ +++|.+| .|+.+|.+++. +.+.+.+.... ..+..++++..++.+.|+ +
T Consensus 253 ~~~~g--------i~PDi~---~~gK~lg-gG~p~~a~~~~-~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~ 319 (427)
T d2gsaa_ 253 QEKFG--------VTPDLT---TLGKIIG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ 319 (427)
T ss_dssp HHHTT--------CCCSEE---EECGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred HHhcC--------CCHHHH---hhhhccC-CCcceeeeeeh-HHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhh
Confidence 22211 334444 5779998 88999999884 44544333211 112256666666666544 3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEec-cccc------ccCChhHHHHHHHHHHHhCCeE
Q 043923 319 KKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDM-RHLL------RSNTFEAEMELWKKIVYDVKLN 390 (469)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~-~~~g~~~~v~~-~~~~------~~~~~~~~~~l~~~ll~~~GI~ 390 (469)
.+. .+.+.++-+++. +.+.+..++.++.+.. ..+|++- +.+ .... ..........+...++ ++||.
T Consensus 320 ~~l-~~~~~~~g~~l~---~~L~~l~~~~~~~~~v~~~ggm~~-i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll-~~Gv~ 393 (427)
T d2gsaa_ 320 PGT-YEYLDQITKRLS---DGLLAIAQETGHAACGGQVSGMFG-FFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIY 393 (427)
T ss_dssp TTH-HHHHHHHHHHHH---HHHHHHHHHTTCCCEEEEETTEEE-EESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEE
T ss_pred hhH-HhhhhHHHHHHH---HHHHHHHhhcCCCcEEcccCCeEE-EEEeccCCCCHHHhhcccHHHHHHHHHHHH-HCCEE
Confidence 333 233333333333 2334444444543322 2233432 222 1110 1111122233445555 56999
Q ss_pred EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 043923 391 ISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 391 v~pg~~f~~~~~~~iRi~~~~~~~e~i~~~l~~L~~~l~~ 430 (469)
+.|+.. .. +-+++. +++++|+++++++++++++
T Consensus 394 l~p~~~-----~~-~~~~l~-~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 394 LAPSQF-----EA-GFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CCSSTT-----SC-EECCTT-CCHHHHHHHHHHHHHHHTC
T ss_pred ECCCCC-----cc-eeCCCC-CCHHHHHHHHHHHHHHHHh
Confidence 987542 11 223443 5999999999999999875
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.4e-13 Score=133.76 Aligned_cols=342 Identities=13% Similarity=0.018 Sum_probs=190.9
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCC--CCCcHHHHHHHHHHHHhHcCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQD--YHGLPAFKKALVEFMSEIRGNKVT 108 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~Lr~aia~~l~~~~~~~~~ 108 (469)
.....+||+..+ .+.+. .+.+.+++++.. .... |.. ....+ -...+++.+.....
T Consensus 40 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~-------------~~~~-~~~~~~~~~~-~~~~l~~~l~~~~~---- 100 (429)
T d1s0aa_ 40 SDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI-------------DAMS-HVMFGGITHA-PAIELCRKLVAMTP---- 100 (429)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHH-------------HHCS-CCCCSSEECH-HHHHHHHHHHHHSC----
T ss_pred CCCCEEEECcccHHHHhhcCCcHHHHHHHHHHH-------------HhcC-CcccCCccch-HHHHHHHHHHhhhc----
Confidence 344568998765 55554 466777766531 1111 110 11112 23334444433322
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc-------CCCCEEEEccCCCcChHHHHhhhCC-------------CEEEEeecc-C
Q 043923 109 FDTSKIVLTAGATSANETLMFCLA-------EPGEAFLLPTPYYPGFDRDLKWRTG-------------VEIVPIQCT-S 167 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~-------~~gd~Vl~~~P~y~~~~~~~~~~~g-------------~~~~~v~~~-~ 167 (469)
...+.+++++++++|+..++.... .+..+|+.....|.+....+....+ ......|.. .
T Consensus 101 ~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
T d1s0aa_ 101 QPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQS 180 (429)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCS
T ss_pred cCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccccccccccccc
Confidence 345789999999999998887653 2345788888877664322211111 111222211 1
Q ss_pred CCCcccC---HHHHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC
Q 043923 168 LNGFQIT---ETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG 242 (469)
Q Consensus 168 ~~~~~~d---~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~ 242 (469)
......+ ++.+++.+.+ .+.++.++++.-. ++-.|. ..|++-+++|.++|++||+++|.||++.++.-.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~---~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 257 (429)
T d1s0aa_ 181 RMDGEWDERDMVGFARLMAA---HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKL 257 (429)
T ss_dssp BC-CCCCGGGGHHHHHHHHH---HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred ccccccchhhhhhhhhhhhh---cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccc
Confidence 1111223 3444444333 3446776666522 354454 568999999999999999999999999985222221
Q ss_pred ccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHh--c-----ccccCcHHHHHHHHHH
Q 043923 243 FVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--S-----SFGLVSSQTQYLLSAL 315 (469)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~--~-----~~~~~s~~~q~~~~~~ 315 (469)
...+... ..+.++ +++|.++-.++.+|.+++ .+.+.+.+... . .....++++..++.+.
T Consensus 258 --~~~~~~~--------v~PDi~---~~gK~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~ 323 (429)
T d1s0aa_ 258 --FACEHAE--------IAPDIL---CLGKALTGGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323 (429)
T ss_dssp --SGGGGGT--------CCCSEE---EECGGGGTSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHH
T ss_pred --cccccce--------eccccc---ccccccccccccccchhh-HHHHHhccCCCCCcceeecCCCCCCcccchhhhcc
Confidence 1112211 223444 578999734489999999 44454444321 1 1122566776666666
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---CCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEe
Q 043923 316 LSDKKFTQNYISENKKRLKQRHRKLVSGLEKA---GISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNIS 392 (469)
Q Consensus 316 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~ 392 (469)
|+..+- +...+..++.-++|.+.|+++ .+-......|+++.+++..... ...+...++ ++||.+.
T Consensus 324 L~~i~~-----~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~------~~~~~~~~~-~~Gl~~~ 391 (429)
T d1s0aa_ 324 LAILES-----GDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN------MAALQKFFV-EQGVWIR 391 (429)
T ss_dssp HHHHHT-----CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBC------HHHHHHHHH-HTTEECC
T ss_pred cccccc-----ccccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCccc------HHHHHHHHH-HCCcEEE
Confidence 553211 122333344445566666554 2111111234666677654322 224555555 5699987
Q ss_pred CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 393 PGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 393 pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
|. .+.+|++... +++++|++++++|.+++++.
T Consensus 392 ~~-------g~~i~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 392 PF-------GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CB-------TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred ec-------CCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 64 2479998765 49999999999999998754
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.59 E-value=7.1e-14 Score=137.91 Aligned_cols=342 Identities=14% Similarity=0.079 Sum_probs=182.5
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ ...+. .|.+.+++++... ... |.....+....+.+++.+.... .
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~------~ 95 (404)
T d1z7da1 36 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAK-------------NLT-ICSRAFFSVPLGICERYLTNLL------G 95 (404)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHT-------------TCS-CCCTTSEEHHHHHHHHHHHHHH------T
T ss_pred CCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHH-------------hCC-CcccccchHHHHHHHHhhhhcc------c
Confidence 344578998765 44443 4667666655211 111 1111112223344444444332 3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------CCCCEEEEccCCCcChHHHHhhhCCCEEE---EeeccCCCCcc---cC
Q 043923 111 TSKIVLTAGATSANETLMFCLA----------EPGEAFLLPTPYYPGFDRDLKWRTGVEIV---PIQCTSLNGFQ---IT 174 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~----------~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~---~v~~~~~~~~~---~d 174 (469)
.+.+.++++++++...++.... .....++.....|...........+.... ..|... ..+. -+
T Consensus 96 ~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 174 (404)
T d1z7da1 96 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAP-QFSKVPYDD 174 (404)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECTTC
T ss_pred cceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCc-cccccccch
Confidence 5788999999999998887642 12235777776666544332211111111 111100 0011 13
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEecC-CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhc
Q 043923 175 ETAIEEAYQLAQKRHLKVKGVLVTNP-SNPLGTT-MSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 252 (469)
Q Consensus 175 ~~~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~~-~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~ 252 (469)
.+.++..+. +.++.+|++ -| ....|.. .+.+-+++|.++|++||+++|.||++.++.-.+.. -..+...
T Consensus 175 ~~~l~~~~~-----~~~iAavi~-EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~--~~~e~~g- 245 (404)
T d1z7da1 175 LEALEEELK-----DPNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL--LCVHHYN- 245 (404)
T ss_dssp HHHHHHHHT-----STTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS--SGGGGGT-
T ss_pred HHHHHHHhc-----CCCEEEEEE-EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccccc--ccccccC-
Confidence 455555443 236666555 46 4456764 56777899999999999999999999874222222 1122211
Q ss_pred cccccCCcCCeEEEEccCccccCCCc-ceEEEEEecCHHHHHHHHHhcc--cccCcHHHHHHHHHHhcCchhhHHHHHHH
Q 043923 253 RNCENTQVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFTQNYISEN 329 (469)
Q Consensus 253 ~~~~~~~~~~~~i~i~S~SK~~g~~G-lRiG~li~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 329 (469)
..+.++ +++|.+| .| +.+|.+++. +.+.+.+..... .+..++++..++.+.|+...- ++..+..
T Consensus 246 -------v~PDiv---t~gK~l~-gG~~p~~~v~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~~~~~~ 312 (404)
T d1z7da1 246 -------VKPDVI---LLGKALS-GGHYPISAVLAN-DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENA 312 (404)
T ss_dssp -------CCCSEE---EECGGGG-TTSSCCEEEEEC-HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred -------CCCCEE---EEccccc-CCCCCcccccch-HHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-chhhhhh
Confidence 223333 7899998 55 899999984 444433332211 123567777777776653211 1122222
Q ss_pred HHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEe
Q 043923 330 KKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 409 (469)
Q Consensus 330 ~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~ 409 (469)
.+.-....+.+.+.++++++......-|+++.+.+..... ...+++.+++ ++||.+.|.. ++.+|++.
T Consensus 313 ~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-----~~~~~~~~l~-~~Gl~~~~~~------~~~ir~~P 380 (404)
T d1z7da1 313 EKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-----NVLDICLKLK-ENGLITRDVH------DKTIRLTP 380 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-----CHHHHHHHHH-HTTEECCEET------TTEEEECC
T ss_pred ccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-----cHHHHHHHHH-hCCeEEecCC------CCEEEEEC
Confidence 2333333344555555555422222234566677654211 1234555555 6699987532 45699987
Q ss_pred ec-CCHHHHHHHHHHHHHHHHhh
Q 043923 410 AN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 410 ~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
+. ++++++++++++|.++++++
T Consensus 381 pl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 381 PLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHhh
Confidence 65 49999999999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=6.4e-14 Score=137.25 Aligned_cols=328 Identities=14% Similarity=0.103 Sum_probs=195.6
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ .+.+. .|.+.+++++.. ......+.... .+.+..+++.+..... ..
T Consensus 34 ~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~-------------~~~~~~~~~~~-~~~~~~la~~l~~~~~----~~ 95 (387)
T d1vefa1 34 AEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQA-------------ETLMAMPQTLP-TPMRGEFYRTLTAILP----PE 95 (387)
T ss_dssp TTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-------------HHCCCCCTTSC-CHHHHHHHHHHHHTSC----TT
T ss_pred CCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHH-------------HhhcccccccC-CchHHHHHHHhhhhcc----cc
Confidence 344568998663 44554 466666666531 11111222212 3556666666654322 22
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCC------------CEEEEeeccCCCCcccCHH
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTG------------VEIVPIQCTSLNGFQITET 176 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~ 176 (469)
.+.+.+++++++|+..+++... .....|+.....|++....+....| ..+..+|.+ |++
T Consensus 96 ~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-------d~~ 168 (387)
T d1vefa1 96 LNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-------DVE 168 (387)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-------CHH
T ss_pred ceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-------CHH
Confidence 3579999999999999988752 2346788888888765433222212 123444432 678
Q ss_pred HHHHHHHHHHhcCCceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccc
Q 043923 177 AIEEAYQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 254 (469)
Q Consensus 177 ~l~~~i~~~~~~~~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~ 254 (469)
.+++.+.+ ++.+|++ .| ....|. ..+.+-+++|.++|++||+++|.||+..++.-.+.. ...+...
T Consensus 169 ~l~~~~~~------~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~--~~~~~~~--- 236 (387)
T d1vefa1 169 ALKRAVDE------ETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR--FAFEHFG--- 236 (387)
T ss_dssp HHHHHCCT------TEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS--STHHHHT---
T ss_pred HHHHhcCC------CeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCC--cccccCC---
Confidence 88877754 6766555 56 334565 577889999999999999999999999984222221 1222221
Q ss_pred cccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc--ccccCcHHHHHHHHHHhcCchhhHHHHHHHHHH
Q 043923 255 CENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFTQNYISENKKR 332 (469)
Q Consensus 255 ~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 332 (469)
..+.++ +++|.+| .|+.++.+++.++ +........ ..+..++++..++.+.|+...- ....++
T Consensus 237 -----v~PDi~---~~gK~l~-gG~~~~~~~~~~~-~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~-----~~~~~~ 301 (387)
T d1vefa1 237 -----IVPDIL---TLAKALG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER-----TRLWER 301 (387)
T ss_dssp -----CCCSEE---EECGGGG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-----HTTHHH
T ss_pred -----cCCcee---eecccCC-CCcccccccccee-eeeccccCCccccCCCCcchhhhcccchhhccc-----ccccch
Confidence 223344 5789998 8888998888544 333222211 1123567777777666643221 223344
Q ss_pred HHHHHHHHHHHHHhcCCcee--cCCceEEEEEecccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEee
Q 043923 333 LKQRHRKLVSGLEKAGISCL--KSNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 410 (469)
Q Consensus 333 l~~~~~~l~~~L~~~g~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~ 410 (469)
+++.-+++.+.|+++.-+.. ...-|++..+++.... . .....++.++|+.+.+. +++.+|++.+
T Consensus 302 v~~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~ie~~~~~-------~-~~~~~~~~~~g~l~~~~------g~~~ir~~Pp 367 (387)
T d1vefa1 302 AAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKA-------A-PYIARLEKEHRVLALQA------GPTVIRFLPP 367 (387)
T ss_dssp HHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSCS-------H-HHHHHHHHHHCEECEES------STTEEEECCC
T ss_pred HhhhhHHHHHHHHhcCCCceEEEeecceEEEEEEeCCc-------h-HHHHHHHHHCCCeEEec------CCCEEEEECC
Confidence 45555667777776522211 1122456667765321 1 23444455668877653 2457899876
Q ss_pred c-CCHHHHHHHHHHHHHHH
Q 043923 411 N-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 411 ~-~~~e~i~~~l~~L~~~l 428 (469)
. ++++++++++++|++++
T Consensus 368 l~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 368 LVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 5 49999999999999886
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.56 E-value=2.7e-13 Score=134.86 Aligned_cols=359 Identities=15% Similarity=0.109 Sum_probs=190.4
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ .+.++ .+.+.+++++.. .... |.......+....+|+.+.+... -.
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~-------------~~~~-~~~~~~~~~~~~~la~~L~~~~~----~~ 99 (431)
T d1zoda1 38 ADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA-------------GKLD-HLFSEMLSRPVVDLATRLANITP----PG 99 (431)
T ss_dssp TTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHH-------------HHCC-CCCTTCCCHHHHHHHHHHHHHSC----TT
T ss_pred CCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHH-------------hhcc-ccccccccHHHHHHHHHHHHhCC----cc
Confidence 344578999765 55564 366766666531 1111 11111112333456666655432 13
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCCcChHHHHhhhCC-----------CEEEEeecc--CCC-----C
Q 043923 111 TSKIVLTAGATSANETLMFCLA--EPGEAFLLPTPYYPGFDRDLKWRTG-----------VEIVPIQCT--SLN-----G 170 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~~g-----------~~~~~v~~~--~~~-----~ 170 (469)
.+.+++++++++|++.+++... ...+.|+...-.|.+....+....+ .....++.. ... .
T Consensus 100 ~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (431)
T d1zoda1 100 LDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNG 179 (431)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETT
T ss_pred cceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeeccccccccccc
Confidence 5789999999999999988742 2346788888887775443322111 112222211 100 0
Q ss_pred cccCHHHHHHHHHHHHhcC-CceeEEEEecC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchh
Q 043923 171 FQITETAIEEAYQLAQKRH-LKVKGVLVTNP-SNPLGT-TMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIM 247 (469)
Q Consensus 171 ~~~d~~~l~~~i~~~~~~~-~~~~~vvl~~P-~NPtG~-~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~ 247 (469)
...+.+.++.......... .++.+|+ .-| ..-.|. ..|++-+++|.++|++||+++|.||++.++.-.+..+ . .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~iAavi-~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~-~-~ 256 (431)
T d1zoda1 180 AYDYLAELDYAFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-A-C 256 (431)
T ss_dssp EECHHHHHHHHHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-T-H
T ss_pred chhhhhhHHHHHHHHHHhcccccccee-eccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccc-c-c
Confidence 1112344444433322222 2455544 446 333454 4688899999999999999999999999742223321 2 2
Q ss_pred hhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhc---ccccCcHHHHHHHHHHhcCchhhHH
Q 043923 248 EILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---SFGLVSSQTQYLLSALLSDKKFTQN 324 (469)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~ 324 (469)
+... ..+.++ +++|.+| .|+.++.+++.++.......... .....++++..++.+.|..... ++
T Consensus 257 ~~~g--------v~PDi~---~~gK~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~-~~ 323 (431)
T d1zoda1 257 QRDG--------VTPDIL---TLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-DG 323 (431)
T ss_dssp HHHT--------CCCSEE---EECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-TT
T ss_pred ccCC--------CCcchh---ccccccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhh-hh
Confidence 2211 223444 5789998 88999999885444333222211 1123556666665555442111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecccccccC--ChhHHHHHHHHHHHhCCeEEeCCCCCCCCCC
Q 043923 325 YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLRSN--TFEAEMELWKKIVYDVKLNISPGSSCHCTEP 402 (469)
Q Consensus 325 ~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~~~v~~~~~~~~~--~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~ 402 (469)
..++..+.-....+.+.+.+.++++......-|.++.+.+....... .......+...++ ++|+.+..- ..+...
T Consensus 324 ~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~-~~Gl~~~~~--~~~~~~ 400 (431)
T d1zoda1 324 LVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIV--QLPGMG 400 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEE--CCTTSC
T ss_pred hhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHH-HhCcccCee--eecCCC
Confidence 12222222222333344555555543222223455555553211110 0012234555555 569864211 111135
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 403 GWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 403 ~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
+.+|++.+. ++++++++++++|.+++++
T Consensus 401 ~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 401 GVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 679999876 4999999999999999986
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.50 E-value=4.9e-12 Score=123.16 Aligned_cols=292 Identities=12% Similarity=0.053 Sum_probs=177.6
Q ss_pred CcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCC--CEEEEccCCCcChHHHHhhhCCCEEEEe
Q 043923 87 GLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-EPG--EAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (469)
Q Consensus 87 g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~g--d~Vl~~~P~y~~~~~~~~~~~g~~~~~v 163 (469)
-..++++.++++++ ..+++.++++|.|+.+++.++. .+| |.|+++.-+|.....++... |++++.+
T Consensus 32 ~v~~fE~~~~~~~g----------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~-G~~pv~v 100 (371)
T d2fnua1 32 RSLLFEEALCEFLG----------VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTPVFA 100 (371)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEEEEC
T ss_pred HHHHHHHHHHHHHC----------cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeecc-Ccccccc
Confidence 36788888999885 4578899999999999999974 344 48999999999888877777 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
+++.+. .++.+++++.+++ ++++|+++ +..|...+.+ ++.++|+++++++|+|.+++....-...
T Consensus 101 Di~~~~--~~~~~~~~~~~~~------~t~avi~v---h~~G~~~~~~---~i~~~~~~~~i~lIEDaaqa~Ga~~~~~- 165 (371)
T d2fnua1 101 GIKNDG--NIDELALEKLINE------RTKAIVSV---DYAGKSVEVE---SVQKLCKKHSLSFLSDSSHALGSEYQNK- 165 (371)
T ss_dssp CBCTTS--SBCGGGSGGGCCT------TEEEEEEE---CGGGCCCCHH---HHHHHHHHHTCEEEEECTTCTTCEETTE-
T ss_pred cccccc--cccchhhhhhccc------hhhccccc---cccccccccc---cccccccccchhhccchhhccCceeccc-
Confidence 988543 3455666666554 89988876 4567777754 5888899999999999999832111111
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHHHHHhcccc------------------cCc
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG------------------LVS 305 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~~~~~~~~~------------------~~s 305 (469)
.... ..+..++-...+|.++. |- -|.++++++.+.+.+......+ .++
T Consensus 166 -~~G~-----------~g~~~~~Sf~~~K~l~~-g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~s 231 (371)
T d2fnua1 166 -KVGG-----------FALASVFSFHAIKPITT-AE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLN 231 (371)
T ss_dssp -ETTS-----------SSSEEEEECCTTSSSCC-SS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCC
T ss_pred -cCCc-----------ccccccccccccccccc-cc-ceEEEeechhhhhhccccccccccccccccccccccccccccc
Confidence 1000 11233333344899863 42 5899998888777665543211 123
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CceE-EEEEecccccccCChhHHHHH
Q 043923 306 SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGL-FCWVDMRHLLRSNTFEAEMEL 379 (469)
Q Consensus 306 ~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~----~~g~-~~~v~~~~~~~~~~~~~~~~l 379 (469)
.+....+..-|+.. +++++ +-++..+++.+.|... ++....+ ...+ ...+.+..... ....++
T Consensus 232 el~Aaigl~qL~~l---~~~~~----~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~r~~~ 300 (371)
T d2fnua1 232 EIQSALGLSQLKKA---PFLMQ----KREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF----TCKKLI 300 (371)
T ss_dssp HHHHHHHHHHHTTH---HHHHH----HHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----GGHHHH
T ss_pred chhhhhhhhhhhhc---cchhh----hhhhhhhhhcccccccccccccccccccccccccccccccccch----hHHHHH
Confidence 33333343444332 22222 2233444556667665 2332211 1111 12222322111 112245
Q ss_pred HHHHHHhCCeEEeCCCCCC----------CCC---------CCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 380 WKKIVYDVKLNISPGSSCH----------CTE---------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 380 ~~~ll~~~GI~v~pg~~f~----------~~~---------~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+.| +++||.+++.-..- ... ...+.|-+.. +++++++..++.|.+++++
T Consensus 301 ~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 301 LESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 370 (371)
T ss_dssp HHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 5555 57799987642100 001 1246554432 5999999999999999875
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.48 E-value=9e-12 Score=121.35 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCCcChHHHHhhhCCCEEEEeecc
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCL-AEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCT 166 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (469)
...|++.++++++ ...++.++++|.|+.+++.++ .++||.|++|.-+|......+... |++++.++++
T Consensus 23 ~~~fE~~~~~~~~----------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~~-g~~pv~~Di~ 91 (374)
T d1o69a_ 23 VNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-KAKPVFIDCD 91 (374)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhhc-cceeEecccc
Confidence 5888999999885 457899999999999999998 789999999999999988888887 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCC-ccc
Q 043923 167 SLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPG-FVS 245 (469)
Q Consensus 167 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~-~~s 245 (469)
+. .+..+.+..+.. . ...+++++|++++ ..|.... ++++.++|+++|+.||+|.|++ ++..- ...
T Consensus 92 ~~-~~~~~~~~~~~~-~---~~~~~~~aii~~~---~~G~~~d---~~~i~~~~~~~~i~vIED~a~a---~g~~~~~~~ 157 (374)
T d1o69a_ 92 ET-YNIDVDLLKLAI-K---ECEKKPKALILTH---LYGNAAK---MDEIVEICKENDIVLIEDAAEA---LGSFYKNKA 157 (374)
T ss_dssp TT-SSBCHHHHHHHH-H---HCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTC---TTCEETTEE
T ss_pred cc-cccccccccccc-h---hcccccccccccc---cccchhh---hHHHHHHhhccCcchhhhhhhh---hcceECCee
Confidence 42 233333332221 1 1234788888664 4566666 5558889999999999999998 43210 011
Q ss_pred hhhhhhccccccCCcCCeEEEEccC--ccccCCCcceEEEEEecCHHHHHHHHHh
Q 043923 246 IMEILKDRNCENTQVWNRVHIVYSL--SKDLGLPGFRVGAIYSNDDMVVAAATKM 298 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~GlRiG~li~~~~~~~~~~~~~ 298 (469)
+. .. ..+.+.|| +|.++..| -|.+++.++.+.+.+..+
T Consensus 158 ~G------------~~-gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~ 197 (374)
T d1o69a_ 158 LG------------TF-GEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFY 197 (374)
T ss_dssp TT------------SS-SSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHH
T ss_pred cC------------CC-CceEEEeccCcccccccc--ceeehhhhHHHHHhhccc
Confidence 11 11 13444455 69886433 488888888776665544
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.46 E-value=2.4e-12 Score=128.81 Aligned_cols=347 Identities=14% Similarity=0.119 Sum_probs=185.3
Q ss_pred CCCCCeeeeecc--ccccC--hHHHHHHHhcCCCccccccCCcccccccccCCCCCCcHHHHHHHHHHHHhHcCCCCCCC
Q 043923 35 QNPTGIIQMGLA--ENQLS--FDLLESWLDRNPDAAGFKRDGQSIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVTFD 110 (469)
Q Consensus 35 ~~~~~~i~L~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~l~~~~~~~~~~~ 110 (469)
.....+||+..+ .+.+. .+.+.+++++...... +.....+. ......+.+.+++.+..... -.
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~--------~~~~~~~~-~~~~~~~a~~lae~l~~~~~----~~ 116 (461)
T d1ohwa_ 50 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVST--------FINRPALG-ILPPENFVEKLRESLLSVAP----KG 116 (461)
T ss_dssp TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHH--------HHCCCCTT-TSCBTTHHHHHHHTGGGGCC----TT
T ss_pred CCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhh--------hccccccc-ccchHHHHHHHHHHHHhhhc----cC
Confidence 344568998654 44453 4667777765321100 00011111 11224566777776654322 24
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------------------------CCCCEEEEccCCCcChHHHHhhhCCC----
Q 043923 111 TSKIVLTAGATSANETLMFCLA----------------------------EPGEAFLLPTPYYPGFDRDLKWRTGV---- 158 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~----------------------------~~gd~Vl~~~P~y~~~~~~~~~~~g~---- 158 (469)
.+.+++++++++|+..+++... .+...|+...-+|++....+....|-
T Consensus 117 ~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~ 196 (461)
T d1ohwa_ 117 MSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIH 196 (461)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHH
T ss_pred cceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccc
Confidence 5689999999999999887642 22347888888887753332222122
Q ss_pred ---------EEEEeeccCCCCc-----------ccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCC-CCCCHHHHHHHH
Q 043923 159 ---------EIVPIQCTSLNGF-----------QITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLG-TTMSRNELNLLV 217 (469)
Q Consensus 159 ---------~~~~v~~~~~~~~-----------~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG-~~~s~e~l~~l~ 217 (469)
...+.+... ..+ ..+.+.+++.+........++.+|++..-+...| ...+.+-+++|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr 275 (461)
T d1ohwa_ 197 KIDIPSFDWPIAPFPRLK-YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLR 275 (461)
T ss_dssp HTTCCCCCCCEECCCCCC-SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHH
T ss_pred cccccccCCccccccccc-ccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHH
Confidence 111111100 000 0124555655554444445677666553344455 457889999999
Q ss_pred HHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHHHHH-HH
Q 043923 218 NIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAA-AT 296 (469)
Q Consensus 218 ~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~~~~-~~ 296 (469)
++|++||+++|.||++.++.-.+.- ... +... .+..+.++ +++|.++ . |+... ...+... ..
T Consensus 276 ~lc~~~gillI~DEV~tG~gRtG~~-~~~-e~~g------i~~~PDiv---~~gK~l~-~----g~~~~-~~~~~~~~~~ 338 (461)
T d1ohwa_ 276 DISRKHGCAFLVDEVQTGGGSTGKF-WAH-EHWG------LDDPADVM---TFSKKMM-T----GGFFH-KEEFRPNAPY 338 (461)
T ss_dssp HHHHHTTCEEEEECTTTCSSTTSSS-SGG-GGGC------CSSCCSEE---EECGGGS-S----EEEEE-CGGGSCSSTT
T ss_pred HHHHhhCcceecccccccccccccc-ccc-cccc------cccCchhh---hhhhccc-c----ccccc-cccccccccc
Confidence 9999999999999999875322321 111 1111 00112333 6889886 4 34433 2222110 00
Q ss_pred HhcccccCcHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHh----cC--CceecCCceEEEEEeccccccc
Q 043923 297 KMSSFGLVSSQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEK----AG--ISCLKSNAGLFCWVDMRHLLRS 370 (469)
Q Consensus 297 ~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g--~~v~~~~~g~~~~v~~~~~~~~ 370 (469)
.....+..++++..++.+.|+-..- +...+..++.-++|.+.|++ +. +.-.... |+++.++++..
T Consensus 339 ~~~~T~~g~p~~~aaa~a~l~~i~~-----~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~-Gl~~~ie~~~~--- 409 (461)
T d1ohwa_ 339 RIFNTWLGDPSKNLLLAEVINIIKR-----EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-GTFCSFDTPDE--- 409 (461)
T ss_dssp SSCCSCSSCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-TTEEEEECSSH---
T ss_pred ccccccccccccchhhcccchhhhh-----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeee-eEEEEEEcCCH---
Confidence 1111123556666666665542210 11122222233334444333 21 2112222 46777888642
Q ss_pred CChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 371 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 371 ~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
....+++..++ ++||.+.+.. ++.||+.... ++++++++++++|.+++++.
T Consensus 410 ---~~~~~i~~~~~-~~Gll~~~~~------~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 410 ---SIRNKLISIAR-NKGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp ---HHHHHHHHHHH-HTTEECEEET------TTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHH-HCCeEEeeCC------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 22335566655 5699998642 4579998765 49999999999999999863
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.27 E-value=7.9e-11 Score=113.87 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCChH-HHHHHHHHHhcCCCCEEEEccCC-CcC-hHHHHhhhCCCEEEEee
Q 043923 89 PAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGAT-SANETLMFCLAEPGEAFLLPTPY-YPG-FDRDLKWRTGVEIVPIQ 164 (469)
Q Consensus 89 ~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G~~-~al~~~~~~l~~~gd~Vl~~~P~-y~~-~~~~~~~~~g~~~~~v~ 164 (469)
.++.+.+.+.+.+.++ ++ ...|++++|++ .++.++...+..+|+.+++..-. |.. +...+... |..+..+.
T Consensus 47 ~~~~~~~r~~l~~l~~----~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~-g~~~~~~~ 121 (361)
T d2c0ra1 47 EAVHNEAQARLLALLG----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-GDTHVAAS 121 (361)
T ss_dssp HHHHHHHHHHHHHHTT----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-SCEEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhc-Cceeeeec
Confidence 3444444444444433 33 33677777765 55566666788888888766533 222 22334455 88888887
Q ss_pred ccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCcc
Q 043923 165 CTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFV 244 (469)
Q Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~ 244 (469)
.+.... ++++.+++.+. ..+.+.+ +|.||...+..+ +.++|+++|+++++|.+.+ ++..+ .
T Consensus 122 ~~~~~~--~~~~~~~~~~~-------~~~~~~v---~~~tg~~~~~~~---i~~~~~~~~al~~vDavss---~g~~~-i 182 (361)
T d2c0ra1 122 SEASNY--MTLPKLQEIQL-------QDNAAYL---HLTSNETIEGAQ---FKAFPDTGSVPLIGDMSSD---ILSRP-F 182 (361)
T ss_dssp CGGGTT--CSCCCGGGCCC-------CTTEEEE---EEESEETTTTEE---CSSCCCCTTSCEEEECTTT---TTSSC-C
T ss_pred cccccc--cchhhhhhhcc-------cCcceEE---EEecccceecce---EEEeeccCCceEEEEeecc---ccccc-c
Confidence 764332 45555555433 2222232 467888888665 6778899999999999997 44433 2
Q ss_pred chhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHH------------HHHHHHHhcccccCcHHHHHH-
Q 043923 245 SIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDM------------VVAAATKMSSFGLVSSQTQYL- 311 (469)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~------------~~~~~~~~~~~~~~s~~~q~~- 311 (469)
.+. +..+.+.|.+|.++.+|.-.+++.. ... .....................
T Consensus 183 d~~--------------~~di~~~s~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (361)
T d2c0ra1 183 DLN--------------QFGLVYAGAQKNLGPSGVTVVIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMV 247 (361)
T ss_dssp CGG--------------GCSEEEEETTTTTCCSSCEEEEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHH
T ss_pred ccc--------------cceeEEEecccccccccCcEEEEEh-HHhhhCccccccccccccccccccccccccceeeehh
Confidence 222 2234455789999877754444332 111 111111111121122211111
Q ss_pred ---HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-C-ceecC---CceEEEEEecccccccCChhHHHHHHHHH
Q 043923 312 ---LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAG-I-SCLKS---NAGLFCWVDMRHLLRSNTFEAEMELWKKI 383 (469)
Q Consensus 312 ---~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~-~v~~~---~~g~~~~v~~~~~~~~~~~~~~~~l~~~l 383 (469)
+......+. ......+.+..+..+........ . ..... .+...+.+.+++..+ ..+ +...
T Consensus 248 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~------~~~-~~~~ 315 (361)
T d2c0ra1 248 NEVLKWIEERGG-----LEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEEL------EKE-FVKA 315 (361)
T ss_dssp HHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHH------HHH-HHHH
T ss_pred hhHHHhhhhccc-----hHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCccc------HHH-HHHH
Confidence 111111111 22333334444444455444432 1 11111 122345566664322 223 4456
Q ss_pred HHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 384 VYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 384 l~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
|+++||.+.+|... -+.+||++.. ++.|+++++++.|+++.++.
T Consensus 316 L~~~GI~~~~G~~~----~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~ 360 (361)
T d2c0ra1 316 SEQEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRSR 360 (361)
T ss_dssp HHHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEecCCCc----CCeEEEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence 67889999988432 1239999966 59999999999999987754
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.2e-10 Score=111.99 Aligned_cols=287 Identities=13% Similarity=0.067 Sum_probs=154.5
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCC-CCcEEEeCChHHHHHHHH-HHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFD-TSKIVLTAGATSANETLM-FCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~-~~~i~~t~G~~~al~~~~-~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~v 163 (469)
+.+.|+.|+++++ .+ ...|++++|++.+...++ ..+..+++.+++..-.+... ...++.. |..++.+
T Consensus 48 ~~~~r~~l~~l~~--------~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~ 118 (360)
T d1bjna_ 48 AEEAEKDFRDLLN--------VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKY-CTPNVFD 118 (360)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTT-SEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhc-Cccceee
Confidence 3566666777765 33 336888888766655554 44667778777776554332 2223333 6666655
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
..+.... .+.+.++..+. .++++++++..+|-||...+...+ .++.+++.+++|.+.+ +...+
T Consensus 119 ~~~~~~~--~~~~~~~~~~~------~~~~~v~v~~~~~~t~~~~~~~~i-----~~~~~~~~v~vDa~~~---~~~~~- 181 (360)
T d1bjna_ 119 AKVTVDG--LRAVKPMREWQ------LSDNAAYMHYCPNETIDGIAIDET-----PDFGADVVVAADFSST---ILSRP- 181 (360)
T ss_dssp CEEEETT--EEEECCGGGCC------CCSSCSCEEECSEETTTTEECCCC-----CCCCTTCCEEEECTTT---TTSSC-
T ss_pred ccccCCC--cchhhhhhhhc------cCCceeEEEecccccccCccccce-----ecccccceeeeeeecc---cccee-
Confidence 5443222 23333333322 367777777788888887765442 3456789999998876 33322
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH------------HHHHHHhcccccCcHHHHHH
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV------------VAAATKMSSFGLVSSQTQYL 311 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~------------~~~~~~~~~~~~~s~~~q~~ 311 (469)
.. ..+..+.+.|.+|.+++|+. .|.++..+... ....................
T Consensus 182 vd--------------~~~~dv~~~ss~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (360)
T d1bjna_ 182 ID--------------VSRYGVIYAGAQKNIGPAGL-TIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYL 246 (360)
T ss_dssp CC--------------GGGCSEEEEETTTTTSSTTC-EEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHH
T ss_pred ee--------------eccceeEEEEcccccccCCC-ceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHH
Confidence 11 12345667789999985553 44444422211 01111111111122211111
Q ss_pred ----HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC----CceEEEEEecccccccCChhHHHHHHHHH
Q 043923 312 ----LSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKS----NAGLFCWVDMRHLLRSNTFEAEMELWKKI 383 (469)
Q Consensus 312 ----~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~----~~g~~~~v~~~~~~~~~~~~~~~~l~~~l 383 (469)
....+... ..+...++..+........+...+.....+ .....+.+.+++... ..++ ..+
T Consensus 247 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~------~~~~-~~~ 314 (360)
T d1bjna_ 247 SGLVFKWLKANG-----GVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSAL------DKLF-LEE 314 (360)
T ss_dssp HHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGG------HHHH-HHH
T ss_pred HHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCccc------HHHH-HHH
Confidence 11111111 123344444444455555555554322211 112245566664322 2233 445
Q ss_pred HHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 043923 384 VYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 431 (469)
Q Consensus 384 l~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~~ 431 (469)
++++||.++.|... -+.||+|+.. .++|+++++++.|+++.+++
T Consensus 315 l~~~Gi~~~~G~~~----~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 315 SFAAGLHALKGHRV----VGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEeecCCCc----cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 66889999887422 1249999966 59999999999999987653
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.06 E-value=6.9e-10 Score=106.84 Aligned_cols=284 Identities=13% Similarity=0.075 Sum_probs=144.7
Q ss_pred cHHHHHHHHHHHHhHcCCCCCCCCC-cEEEeCChHHHHHHHH-HHhcCCCCEEEEccCCCcCh--HHHHhhhCCCEEEEe
Q 043923 88 LPAFKKALVEFMSEIRGNKVTFDTS-KIVLTAGATSANETLM-FCLAEPGEAFLLPTPYYPGF--DRDLKWRTGVEIVPI 163 (469)
Q Consensus 88 ~~~Lr~aia~~l~~~~~~~~~~~~~-~i~~t~G~~~al~~~~-~~l~~~gd~Vl~~~P~y~~~--~~~~~~~~g~~~~~v 163 (469)
+.+.|+.++++++ ++.+ .|++++|++++...+. ..+..+++.+++....+..- ...+... +...+..
T Consensus 50 ~~~~r~~l~~l~~--------~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~-~~~~~~~ 120 (360)
T d1w23a_ 50 HEQAQNLLRELLQ--------IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLL-GETHIAA 120 (360)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHh-hhcceee
Confidence 3566777777775 4444 6888888877666544 44567778888776544322 2223333 6666555
Q ss_pred eccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCc
Q 043923 164 QCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGF 243 (469)
Q Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~ 243 (469)
....... .+++.++.... ....+. -+|-||...+.++ +.++|+++|+++|+|.+.+ +...+
T Consensus 121 ~~~~~~~--~~~~~~~~~~~-------~~~~~~---~~~~tg~~~~~~~---i~~~~~~~g~l~ivDavqs---~g~~~- 181 (360)
T d1w23a_ 121 STKANSY--QSIPDFSEFQL-------NENDAY---LHITSNNTIYGTQ---YQNFPEINHAPLIADMSSD---ILSRP- 181 (360)
T ss_dssp ECGGGTS--CSCCCGGGCCC-------CTTEEE---EEEESEETTTTEE---CSSCCCCCSSCEEEECTTT---TTSSC-
T ss_pred ccccccc--cchhhhhhccc-------ccccce---eEecCCcccccee---eeeccccceeeEEeecccc---ccccc-
Confidence 5432221 12233332211 222222 2456888888665 7788999999999999997 44332
Q ss_pred cchhhhhhccccccCCcCCeEEEEccCccccCCCcceEEEEEecCHHH------------HHHHHHhcccccCcHHHHH-
Q 043923 244 VSIMEILKDRNCENTQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMV------------VAAATKMSSFGLVSSQTQY- 310 (469)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~GlRiG~li~~~~~~------------~~~~~~~~~~~~~s~~~q~- 310 (469)
..+. ..+.++ .+++|.++++|. .|+++..+... ...................
T Consensus 182 id~~------------~~~vd~--~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (360)
T d1w23a_ 182 LKVN------------QFGMIY--AGAQKNLGPSGV-TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYM 246 (360)
T ss_dssp CCGG------------GCSEEE--EETTTTTSCTTC-EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHH
T ss_pred cccc------------cccceE--EeeccccccCCc-ceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeec
Confidence 2222 223344 466666654443 44444322110 0011111111112222111
Q ss_pred ---HHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec----CCceEEEEEecccccccCChhHHHHHHHH
Q 043923 311 ---LLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLK----SNAGLFCWVDMRHLLRSNTFEAEMELWKK 382 (469)
Q Consensus 311 ---~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~----~~~g~~~~v~~~~~~~~~~~~~~~~l~~~ 382 (469)
++..++.... . ....++............... ...... ..+...+.+.+++.. ...++..
T Consensus 247 ~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~------~~~~~~~- 314 (360)
T d1w23a_ 247 LRNVLDWIKDLGG--A---EAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE------LNQQFLA- 314 (360)
T ss_dssp HHHHHHHHHHTTH--H---HHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH------HHHHHHH-
T ss_pred hhHHHHHHhhhhh--h---HHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCc------cHHHHHH-
Confidence 1122222221 1 112222222323333333332 222221 111124556666432 2224444
Q ss_pred HHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 043923 383 IVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 430 (469)
Q Consensus 383 ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l~~ 430 (469)
.+.++||.++.|.... +.+|+|+.. .+.|+++++++.|+++.+.
T Consensus 315 ~l~~~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 315 KAKEQGFVGLNGHRSV----GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHTTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 5567899998885432 249999854 4899999999999998764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=1.9e-08 Score=98.17 Aligned_cols=291 Identities=13% Similarity=0.127 Sum_probs=168.5
Q ss_pred CCcHHHHHHHHHHHHhHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCCcChHHH----HhhhCCCEE
Q 043923 86 HGLPAFKKALVEFMSEIRGNKVTFDTSKIVLTAGATSANETLMFCLA-EPGEAFLLPTPYYPGFDRD----LKWRTGVEI 160 (469)
Q Consensus 86 ~g~~~Lr~aia~~l~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~----~~~~~g~~~ 160 (469)
+|..++--.+..++.+..| .+.-+.-+-.|++.....++.+.. ...+.+++..-.++.+... +... |+++
T Consensus 104 QG~Lq~l~e~q~~l~eltG----md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~-g~~v 178 (437)
T d1wyua1 104 QGVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAV-GAKL 178 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHT-TCEE
T ss_pred HHHHHHHHHHHHHHHHhhC----CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccc-eeeE
Confidence 4666666666666766655 455566677788877776655542 2456788888888776544 2334 9999
Q ss_pred EEeeccCCCCcccCHHHHHHHHHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCC
Q 043923 161 VPIQCTSLNGFQITETAIEEAYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSS 240 (469)
Q Consensus 161 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~ 240 (469)
+.++.+..+ .+.+++ +.++.+|++.+||. .|..- +++++++++++.|.+++.|..-.. ...
T Consensus 179 v~v~~~~~~---~~~~~~----------~~~~Aavmi~~Pnt-~G~~e---d~~~i~~~~h~~G~l~~~~ad~~a--l~~ 239 (437)
T d1wyua1 179 LTLPLEGGR---TPLPEV----------GEEVGAVVVQNPNF-LGALE---DLGPFAEAAHGAGALFVAVADPLS--LGV 239 (437)
T ss_dssp EEECCBTTB---CCCCCC----------CTTEEEEEEESSCT-TSBCC---CHHHHHHHHHHTTCEEEEECCTTG--GGT
T ss_pred Eeeeccccc---chhhhh----------ccceeEEEEccccc-ccccc---chHHHHHHhhhccceEEeeechhh--hhc
Confidence 999986422 222221 22889999999965 78773 467789999999998777643211 111
Q ss_pred CCccchhhhhhccccccCCcCCeEEEEccCccccC----CCcceEEEEEecCHHHHH-----------------------
Q 043923 241 PGFVSIMEILKDRNCENTQVWNRVHIVYSLSKDLG----LPGFRVGAIYSNDDMVVA----------------------- 293 (469)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g----~~GlRiG~li~~~~~~~~----------------------- 293 (469)
- .+..++ +-.|++++ +|.|| ..|-..|++.+.++..+.
T Consensus 240 l--~~Pg~~------------GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lq 304 (437)
T d1wyua1 240 L--KPPGAY------------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQ 304 (437)
T ss_dssp B--CCHHHH------------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCG
T ss_pred c--cccccc------------ccceEeec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecc
Confidence 1 122222 34455555 55544 233446777764432211
Q ss_pred ----HHHHhc--ccccCc-HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEe
Q 043923 294 ----AATKMS--SFGLVS-SQTQYLLSALLSDKKFTQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVD 363 (469)
Q Consensus 294 ----~~~~~~--~~~~~s-~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~~~~g~~--~~v~ 363 (469)
.+++-. +..+.+ .+....+..++... ..+-+++..++...+..++.+.|.+. |+++..+.. +| +.++
T Consensus 305 treqhIrRekatsnict~q~l~a~~a~~Y~~~l--G~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~-~f~ef~v~ 381 (437)
T d1wyua1 305 AREQYIRRAKAKSNITTNAQLTALMGAMYLAAL--GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFNEFALA 381 (437)
T ss_dssp GGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCSEEEEE
T ss_pred cccccccccccccchhhHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCC-eeeEEEEE
Confidence 111111 111122 22222222222211 13446677777777888999999887 776554332 33 2344
Q ss_pred cccccccCChhHHHHHHHHHHHhCCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 043923 364 MRHLLRSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 428 (469)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~~f~~~~~~~iRi~~~~-~~~e~i~~~l~~L~~~l 428 (469)
++. +..++.++|+ ++||... -..|....++.+.+++.. .++++|++++++|++++
T Consensus 382 ~~~--------~~~~i~k~L~-d~G~~~~-~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 382 LPK--------DPEAVRRALA-ERGFHGA-TPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp CSS--------CHHHHHHHHH-HTTCCCC-EECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCC--------CHHHHHHHHH-hCCCCCC-cccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 432 1234556655 6698531 111222235789999976 48999999999999864
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=6.7e-08 Score=95.37 Aligned_cols=288 Identities=12% Similarity=0.081 Sum_probs=166.6
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc---CCC----CEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLA---EPG----EAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEA 181 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~---~~g----d~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 181 (469)
++..|.-+-.|++.+-..++.+.. +.| ..+++..+.+...........+..++.++.+. ....+.+.+...
T Consensus 121 MdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 198 (471)
T d1wyub1 121 MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRE 198 (471)
T ss_dssp CSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHH
T ss_pred CCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeecccccc--cccccchhhhhh
Confidence 444555566777766555544431 122 34566666666555554444488888888764 334677777765
Q ss_pred HHHHHhcCCceeEEEEecCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccccccccCCCCccchhhhhhccccccCCcC
Q 043923 182 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNIITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTQVW 261 (469)
Q Consensus 182 i~~~~~~~~~~~~vvl~~P~NPtG~~~s~e~l~~l~~~~~~~~~~iI~Deay~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 261 (469)
... ++.++++.+|+++.+..-. .+.+.+++++.+..+++|-+-......- .+....
T Consensus 199 ~~~------~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~g~~~~~~~~~~~~~~~l---~~p~~~------------ 254 (471)
T d1wyub1 199 LGP------HVAALMLTNPNTLGLFERR---ILEISRLCKEAGVQLYYDGANLNAIMGW---ARPGDM------------ 254 (471)
T ss_dssp CST------TEEEEEECSSCTTSCCCTT---HHHHHHHHHHHTCEEEEEGGGGGGTTTT---CCHHHH------------
T ss_pred hhc------cccceeeccCCCcccccch---hhhhHHHHHhccccccccccchhhhhhc---cccCcc------------
Confidence 443 7888899999886655433 4457778888888888886654221111 111111
Q ss_pred CeEEEEccCcccc----CCCcceEEEEEecCHHHHHHHHHh-------------------cccccCc-HHHHHHHHHHhc
Q 043923 262 NRVHIVYSLSKDL----GLPGFRVGAIYSNDDMVVAAATKM-------------------SSFGLVS-SQTQYLLSALLS 317 (469)
Q Consensus 262 ~~~i~i~S~SK~~----g~~GlRiG~li~~~~~~~~~~~~~-------------------~~~~~~s-~~~q~~~~~~l~ 317 (469)
...+++...++.| |..|--+|++.+.++.+++.--++ +...+.+ .+...++..++.
T Consensus 255 g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYls 334 (471)
T d1wyub1 255 GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIR 334 (471)
T ss_dssp TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHH
Confidence 2233333444544 445666888888555433211000 0011122 222222222222
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE--EEEecccccccCChhHHHHHHHHHHHhCCeEEeCCC
Q 043923 318 DKKFTQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--CWVDMRHLLRSNTFEAEMELWKKIVYDVKLNISPGS 395 (469)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~~~~g~~--~~v~~~~~~~~~~~~~~~~l~~~ll~~~GI~v~pg~ 395 (469)
- +..+-+++..+....+..++.+.|+..|+++..+ +.+| +.++++... ...++.++|+ ++|+.- +..
T Consensus 335 l--lG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~-~~ff~EFvv~~~~~~------~~~~i~k~L~-~~G~~~-~~~ 403 (471)
T d1wyub1 335 T--LGLEGLKKAAALAVLNARYLKELLKEKGYRVPYD-GPSMHEFVAQPPEGF------RALDLAKGLL-ELGFHP-PTV 403 (471)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSC-SSCCSCEEEBCSTTC------CHHHHHHHHH-HTTCCC-CEE
T ss_pred H--hCchhHHHHHHHHHHHHHHHHHHHhhcCceeccC-cceeeEEeecCCCCC------CHHHHHHHHH-HcCCCC-Ccc
Confidence 2 1245567778888888899999998888886433 3232 234444322 1234666776 569853 333
Q ss_pred CCCCCCCCeEEEEeecC-CHHHHHHHHHHHHHHHHhhcc
Q 043923 396 SCHCTEPGWFRVCFANM-SEDTLKLSMQRLKAFVDSITT 433 (469)
Q Consensus 396 ~f~~~~~~~iRi~~~~~-~~e~i~~~l~~L~~~l~~~~~ 433 (469)
.|....++.+-||+... ++++|+.++++|++++++.++
T Consensus 404 ~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~~ 442 (471)
T d1wyub1 404 YFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKE 442 (471)
T ss_dssp SCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCHH
T ss_pred cCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 44433466788999774 999999999999999998764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.53 E-value=2.2 Score=36.36 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+-..++||.|++..=..+...|.+.|-.|++..-.-.......+.. +.+.+.+++. |.+++++.+++..++-
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-~~~~~~~Dv~-------~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-GAHPVVMDVA-------DPASVERGFAEALAHL 75 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-TCEEEECCTT-------CHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCeEEEEecC-------CHHHHHHHHHHHHHhc
Confidence 3445677777666656667778888988888765433344444444 6665544332 5677887777655444
Q ss_pred CceeEEEEecC-CCCCCC--CCCHHHHHHHHHHH
Q 043923 190 LKVKGVLVTNP-SNPLGT--TMSRNELNLLVNII 220 (469)
Q Consensus 190 ~~~~~vvl~~P-~NPtG~--~~s~e~l~~l~~~~ 220 (469)
.+... +++|. ..+.+. -++.+++++..++-
T Consensus 76 g~iDi-lVnnAG~~~~~~~~~~~~~~~~~~~~vN 108 (242)
T d1ulsa_ 76 GRLDG-VVHYAGITRDNFHWKMPLEDWELVLRVN 108 (242)
T ss_dssp SSCCE-EEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred CCceE-EEECCcccccCchhhCcchhhhcccccc
Confidence 46775 45544 222232 36888888887754
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=84.12 E-value=2.2 Score=36.30 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=66.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+-..+++|.|+...=..+...|.+.|-.|++..-.-.......+.. |.++..+.+|-. +.+.+++.+++..+..
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dls-----~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-EAEAIAVVADVS-----DPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-CSSEEEEECCTT-----SHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCceEEEEecCC-----CHHHHHHHHHHHHHHh
Confidence 3456777777776666777888899998888765444344445555 778888877632 5677887777665555
Q ss_pred CceeEEEEecCCCCCCC--CCCHHHHHHHHHHH
Q 043923 190 LKVKGVLVTNPSNPLGT--TMSRNELNLLVNII 220 (469)
Q Consensus 190 ~~~~~vvl~~P~NPtG~--~~s~e~l~~l~~~~ 220 (469)
.++..+|.+....+.+. -++.+++++..+..
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n 110 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVN 110 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHH
T ss_pred CCccEeccccccccccchhhhhccccccccccc
Confidence 57776554433333333 35667777666644
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.16 E-value=5.9 Score=33.79 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHH----hhhCCCEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDL----KWRTGVEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
++-..++||.|++..=..+...|.+.|-.|++..-.-....... +.. |.++..+.+|- -|.+++++.+++
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv-----~~~~~v~~~~~~ 80 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDV-----SNTDIVTKTIQQ 80 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCT-----TCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccC-----CCHHHHHHHHHH
Confidence 34445667766665555666778888988887766554443332 334 77888888763 267888888877
Q ss_pred HHhcCCceeEEEEecC-CCCCCC--CCCHHHHHHHHHHH
Q 043923 185 AQKRHLKVKGVLVTNP-SNPLGT--TMSRNELNLLVNII 220 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P-~NPtG~--~~s~e~l~~l~~~~ 220 (469)
..++..++..+| +|. ..+.+. -++.++++++.++-
T Consensus 81 ~~~~~g~iDilV-nnAg~~~~~~~~~~~~~~~~~~~~~N 118 (260)
T d1h5qa_ 81 IDADLGPISGLI-ANAGVSVVKPATELTHEDFAFVYDVN 118 (260)
T ss_dssp HHHHSCSEEEEE-ECCCCCCCSCGGGCCHHHHHHHHHHH
T ss_pred HHHHhCCCcEec-ccccccccCCHHHhcccccccccccc
Confidence 665556787644 444 333332 36888888877744
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.99 E-value=3.8 Score=34.79 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=62.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+-..++||.|++..=..+...|.+.|..|++..-.-.......... +-+...+++|- -|.+++++.+++..+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-ADAARYVHLDV-----TQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-GGGEEEEECCT-----TCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hCcceEEEeec-----CCHHHHHHHHHHHHHHh
Confidence 3445666666555444566678889988887664433333344444 55666777653 26678887777665544
Q ss_pred CceeEEEEecC-CCCCCC--CCCHHHHHHHHHHH
Q 043923 190 LKVKGVLVTNP-SNPLGT--TMSRNELNLLVNII 220 (469)
Q Consensus 190 ~~~~~vvl~~P-~NPtG~--~~s~e~l~~l~~~~ 220 (469)
.++.. +++|. ..+.+. -++.+++++..++-
T Consensus 79 g~idi-linnAG~~~~~~~~~~~~~~~~~~~~vN 111 (244)
T d1nffa_ 79 GGLHV-LVNNAGILNIGTIEDYALTEWQRILDVN 111 (244)
T ss_dssp SCCCE-EEECCCCCCCBCTTTSCHHHHHHHHHHH
T ss_pred CCCeE-EEECCcccCCCchhhCCHHHHhHHhhcc
Confidence 56775 44444 334443 35778888777643
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.63 E-value=3.1 Score=35.59 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=65.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCC
Q 043923 111 TSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHL 190 (469)
Q Consensus 111 ~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 190 (469)
-..++||.|++..=..+...|.+.|-.|++..-.-.......+.. |.++..+++|- -|.+++++.+++..++..
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-~~~~~~~~~Dv-----t~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-GPAACAIALDV-----TDQASIDRCVAELLDRWG 78 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-CTTEEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-CCceEEEEeeC-----CCHHHHHHHHHHHHHHhC
Confidence 345667777666556666778888988887664433344445555 77888888763 266888887776655545
Q ss_pred ceeEEEEecC-CCCCCC--CCCHHHHHHHHHHH
Q 043923 191 KVKGVLVTNP-SNPLGT--TMSRNELNLLVNII 220 (469)
Q Consensus 191 ~~~~vvl~~P-~NPtG~--~~s~e~l~~l~~~~ 220 (469)
++.. +++|. ..+.+. .++.+++++..+..
T Consensus 79 ~iDi-lVnnAg~~~~~~~~~~~~~~~~~~~~vN 110 (256)
T d1k2wa_ 79 SIDI-LVNNAALFDLAPIVEITRESYDRLFAIN 110 (256)
T ss_dssp CCCE-EEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred CccE-EEeecccccccccccCCHHHHHhhhcee
Confidence 7775 45554 233332 35778888877743
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=80.79 E-value=5.7 Score=33.72 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=64.5
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHH----HHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHH
Q 043923 109 FDTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDR----DLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQL 184 (469)
Q Consensus 109 ~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 184 (469)
++-.-++||.|++..=..+...|.+.|-.|++..-.-..... ..... |.++..+++|- -|.+++++.+++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv-----~~~~~v~~~~~~ 76 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDV-----SNYEEVKKLLEA 76 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCT-----TCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccC-----CCHHHHHHHHHH
Confidence 344456676666655556667788899888886643222222 22334 77888887763 266777777776
Q ss_pred HHhcCCceeEEEEecC-CCCCCC--CCCHHHHHHHHHHH
Q 043923 185 AQKRHLKVKGVLVTNP-SNPLGT--TMSRNELNLLVNII 220 (469)
Q Consensus 185 ~~~~~~~~~~vvl~~P-~NPtG~--~~s~e~l~~l~~~~ 220 (469)
..++..++..+| +|. ..+.+. -++.+++++..++-
T Consensus 77 ~~~~~g~iDiLV-nnAG~~~~~~~~~~~~e~~~~~~~vN 114 (251)
T d1vl8a_ 77 VKEKFGKLDTVV-NAAGINRRHPAEEFPLDEFRQVIEVN 114 (251)
T ss_dssp HHHHHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HHHHcCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHHhh
Confidence 555445677544 444 344443 35888888887754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=80.62 E-value=4.5 Score=34.23 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=61.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcCCc
Q 043923 112 SKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRHLK 191 (469)
Q Consensus 112 ~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 191 (469)
.-+++|.|++..=..+...|.+.|..|++..-.-.......+.. +.+...+.+|- -|.+++++.+++..++..+
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~-~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 78 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-GANGKGLMLNV-----TDPASIESVLEKIRAEFGE 78 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-GGGEEEEECCT-----TCHHHHHHHHHHHHHHTCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-CCCCcEEEEEe-----cCHHHhhhhhhhhhcccCC
Confidence 34566666655555666778889988887664433333344444 66666676653 2568888887776655557
Q ss_pred eeEEEEecC-CCCCCC--CCCHHHHHHHHHH
Q 043923 192 VKGVLVTNP-SNPLGT--TMSRNELNLLVNI 219 (469)
Q Consensus 192 ~~~vvl~~P-~NPtG~--~~s~e~l~~l~~~ 219 (469)
+..+| +|. ..+.+. -++.+++++..++
T Consensus 79 iDilV-nnAg~~~~~~~~~~~~~~~~~~~~v 108 (243)
T d1q7ba_ 79 VDILV-NNAGITRDNLLMRMKDEEWNDIIET 108 (243)
T ss_dssp CSEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cceeh-hhhhhccccccccccccccccccce
Confidence 77544 554 233332 3577787777763
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=80.05 E-value=4.6 Score=34.51 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=63.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEEccCCCcChHHHHhhhCCCEEEEeeccCCCCcccCHHHHHHHHHHHHhcC
Q 043923 110 DTSKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSLNGFQITETAIEEAYQLAQKRH 189 (469)
Q Consensus 110 ~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 189 (469)
+-..++||.|++..=..+...|.+.|-.|++..-.-.......+.. |.++..+++|- -|.+++++.+++..++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-GDAARYQHLDV-----TIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-GGGEEEEECCT-----TCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-CCceEEEEccc-----CCHHHHHHHHHHHHHHc
Confidence 3445677766665555666778888988887764433344444544 66677777663 25677887777665544
Q ss_pred CceeEEEEecCC-CCCC--CCCCHHHHHHHHHHH
Q 043923 190 LKVKGVLVTNPS-NPLG--TTMSRNELNLLVNII 220 (469)
Q Consensus 190 ~~~~~vvl~~P~-NPtG--~~~s~e~l~~l~~~~ 220 (469)
.++.. +++|.. .+.+ .-++.++++++.++-
T Consensus 78 g~iDi-lVnnAg~~~~~~~~~~~~~~~~~~~~vN 110 (254)
T d1hdca_ 78 GSVDG-LVNNAGISTGMFLETESVERFRKVVEIN 110 (254)
T ss_dssp SCCCE-EEECCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCccE-EEecCccccccccccccccccchhhhHH
Confidence 56775 445542 2222 245778887776643
|