Citrus Sinensis ID: 043924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccHHcccccccEEEEccccccccccHHHHHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MVIMFVLLLIILegggsegclDQERFALLRLKlffddpfnslhhwvddegatdccqwervecsnttgRVIQLDLsfignwdlkerylnaslftpfQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSnrlegnidvk
Flexible Loop (DISEMBL)
MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTslylysnrlegnidvk
Low Complexity Region (SEG)
MVIMFVllliilegggsegCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHlssltslylysNRLEGNIDVK
Disordered region (IsUnstruct)
*VIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRL*******
Disordered Region (DISOPRED)
MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWD**********FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID**
Disordered Region (DISEMBL)
MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK
Disordered Region (DISPRO)
MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q05091	330	Polygalacturonase inhibit	N/A	no	0.886	0.448	0.318	2e-11
Q9C9H7	847	Receptor-like protein 12	no	no	0.946	0.186	0.312	5e-10
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.724	0.189	0.330	5e-09
Q9SH71	587	Putative inactive recepto	no	no	0.874	0.248	0.291	2e-08
C0LGW6	966	LRR receptor-like serine/	no	no	0.844	0.145	0.311	3e-08
Q8GT95	332	Polygalacturonase inhibit	no	no	0.814	0.409	0.286	2e-07
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.658	0.109	0.355	4e-07
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.928	0.148	0.289	4e-07
Q94AG2	625	Somatic embryogenesis rec	no	no	0.910	0.243	0.343	4e-07
A7PW81	333	Polygalacturonase inhibit	no	no	0.838	0.420	0.297	6e-07

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 28/176 (15%)

Query: 11  ILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVI 70
           +L    S+ C   ++  LL++K  F DP+  L  W  D   TDCC W  V C +TT R+ 
Sbjct: 18  VLNPALSDLCNPDDKKVLLQIKKAFGDPY-VLASWKSD---TDCCDWYCVTCDSTTNRIN 73

Query: 71  QLDL----------SFIGNWDLKER---YLNASLFTPFQQ-------LESLYLEYNNIAG 110
            L +          + +G+    E    +   +L  P Q        L+SL L + N++G
Sbjct: 74  SLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSG 133

Query: 111 CVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166
            V     + LS+L NL  LDLS N    +I SS++ L +L +L L  N+L G+I +
Sbjct: 134 SVP----DFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPI 185

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.
Pyrus communis (taxid: 23211)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 34/192 (17%)

Query: 1   MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDD-----EGATDCC 55
           ++I   LL+  L       C D +R ALL  +  F  P N+  H ++        +TDCC
Sbjct: 15  IIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEF--PINASWHIMNQWRGPWNKSTDCC 72

Query: 56  QWERVECSNTTGRVIQLDL--SFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVE 113
            W  V C++ +G+VI LD+  +F+ N+ LK    N+SLF   Q L  L L   N+ G + 
Sbjct: 73  LWNGVTCNDKSGQVISLDIPNTFLNNY-LKT---NSSLFK-LQYLRHLDLTNCNLYGEIP 127

Query: 114 N--------------------EGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSL 153
           +                    E    +  L+ L+ L L+ N+    I SS+ +LS L +L
Sbjct: 128 SSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNL 187

Query: 154 YLYSNRLEGNID 165
            L+SNRL G I 
Sbjct: 188 ELFSNRLVGKIP 199

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 18/139 (12%)

Query: 27  ALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERY 86
           AL+ +K    DP   L +W  D  A D C W  V CS+          +F+       + 
Sbjct: 44  ALMDIKASLHDPHGVLDNW--DRDAVDPCSWTMVTCSSE---------NFVIGLGTPSQN 92

Query: 87  LNASL---FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS 143
           L+ +L    T    L  + L+ NNI G +  E    + RL+ L+ LDLS+N F+  I  S
Sbjct: 93  LSGTLSPSITNLTNLRIVLLQNNNIKGKIPAE----IGRLTRLETLDLSDNFFHGEIPFS 148

Query: 144 VAHLSSLTSLYLYSNRLEG 162
           V +L SL  L L +N L G
Sbjct: 149 VGYLQSLQYLRLNNNSLSG 167

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 39/185 (21%)

Query: 1   MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLH-HWVDDEGATDCCQWER 59
           +++ FVL+        S   L+ ++ ALL     F   FNS   HW  ++ +  C  W  
Sbjct: 10  LILCFVLI--------SSQTLEDDKKALLH----FLSSFNSSRLHW--NQSSDVCHSWTG 55

Query: 60  VECSNTTGRVIQLDLSFIGNWDLKERYLNASL--------------------FTPFQQLE 99
           V C+    R++ + L  +G   L   +  + L                    FT  + L 
Sbjct: 56  VTCNENGDRIVSVRLPAVGFNGLIPPFTISRLSSLKFLSLRKNHFTGDFPSDFTNLKSLT 115

Query: 100 SLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNR 159
            LYL++N+++G +    +   S L NLK+LDLS N FN SI +S++ L+SL  L L +N 
Sbjct: 116 HLYLQHNHLSGPL----LAIFSELKNLKVLDLSNNGFNGSIPTSLSGLTSLQVLNLANNS 171

Query: 160 LEGNI 164
             G I
Sbjct: 172 FSGEI 176

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 16  GSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLS 75
           G    ++ E  AL+ +K  F +  N L  W DD   +D C W  V C N +  V+ L+LS
Sbjct: 21  GVASAMNNEGKALMAIKGSFSNLVNMLLDW-DDVHNSDLCSWRGVFCDNVSYSVVSLNLS 79

Query: 76  FIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENL 135
              + +L      A      + L+S+ L+ N +AG + +E    +   ++L  LDLSENL
Sbjct: 80  ---SLNLGGEISPA--IGDLRNLQSIDLQGNKLAGQIPDE----IGNCASLVYLDLSENL 130

Query: 136 FNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166
               I  S++ L  L +L L +N+L G +  
Sbjct: 131 LYGDIPFSISKLKQLETLNLKNNQLTGPVPA 161

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GT95|PGIP1_ORYSJ Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 35/171 (20%)

Query: 20  CLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFI-G 78
           C   ++ AL+R+K    +P  +L  W     + DCC+W+ V C +  GRV  +   FI G
Sbjct: 27  CPPSDKQALMRVKQSLGNPA-TLSTW--SLASADCCEWDHVRC-DEAGRVNNV---FIDG 79

Query: 79  NWDLKERYLNA----------SLF-------------TPFQQLESLYLEYNNIAGCVENE 115
             D++ +  +A          SLF             T    L+ L + + N++G + + 
Sbjct: 80  ANDVRGQIPSAVAGLTALMSLSLFRLPGLSGPIPACLTALSNLQFLTISHTNVSGVIPDS 139

Query: 116 GIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166
               L+R+ +L  +DLS N     I +S + L +L SL L SN+L G I  
Sbjct: 140 ----LARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPA 186

Inhibitor of fungal polygalacturonase. Regulates floral organ number.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 45  WVDDEGATDCCQWERVEC-SNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYL 103
           W++   +TDCC W  + C SN TGRVI+L+L   GN  L  + L+ SL     ++  L L
Sbjct: 53  WINSSSSTDCCNWTGITCNSNNTGRVIRLEL---GNKKLSGK-LSESL-GKLDEIRVLNL 107

Query: 104 EYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN 163
             N I   +       +  L NL+ LDLS N  +  I +S+ +L +L S  L SN+  G+
Sbjct: 108 SRNFIKDSIP----LSIFNLKNLQTLDLSSNDLSGGIPTSI-NLPALQSFDLSSNKFNGS 162

Query: 164 I 164
           +
Sbjct: 163 L 163

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 28/183 (15%)

Query: 4   MFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNS--LHHWVDDEGATDCCQWERVE 61
           + +++ I+L    +     +E  ALL+ K  F +  +S  L  WV+   ++ C  W  V 
Sbjct: 30  VLLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVA 89

Query: 62  CSNTTGRVIQLDLSFIGNWDLKERYLNASL----------------FTP----FQQLESL 101
           CS   G +I+L+L+  G     E +  +SL                 +P    F +LE  
Sbjct: 90  CS--LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYF 147

Query: 102 YLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161
            L  N + G +  E    L  LSNL  L L EN  N SI S +  L+ +T + +Y N L 
Sbjct: 148 DLSINQLVGEIPPE----LGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLT 203

Query: 162 GNI 164
           G I
Sbjct: 204 GPI 206

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 80/166 (48%), Gaps = 14/166 (8%)

Query: 3   IMFVLLLIILEGGGSE--GCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERV 60
           ++F+LL +IL    S      + E  AL  L++   DP N L  W  D    + C W  V
Sbjct: 6   VVFILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSW--DPTLVNPCTWFHV 63

Query: 61  ECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL 120
            C+N    VI++DL   GN +L   +L   L    + L+ L L  NNI G + +     L
Sbjct: 64  TCNNENS-VIRVDL---GNAELSG-HLVPELGV-LKNLQYLELYSNNITGPIPSN----L 113

Query: 121 SRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166
             L+NL  LDL  N F+  I  S+  LS L  L L +N L G+I +
Sbjct: 114 GNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPM 159

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A7PW81|PGIP_VITVI Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 28/168 (16%)

Query: 17  SEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQL---- 72
           SE C  +++  LL++K   D+P+  L  W  +   TDCC W  VEC  TT R+  L    
Sbjct: 27  SERCNPKDKKVLLQIKKALDNPY-ILASWNPN---TDCCGWYCVECDLTTHRINSLTIFS 82

Query: 73  ------------DLSFIGNWDLKERYLNASLFTP----FQQLESLYLEYNNIAGCVENEG 116
                       DL F+     ++         P     + L+ + L + N++G V    
Sbjct: 83  GQLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVP--- 139

Query: 117 IERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164
               S L NL  LDLS N  +  I  S++ L +L +L+L  N L G I
Sbjct: 140 -AFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHLTGPI 186

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Vitis vinifera (taxid: 29760)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224120284	929	predicted protein [Populus trichocarpa]	0.976	0.175	0.485	1e-35
224070712	174	predicted protein [Populus trichocarpa]	0.988	0.948	0.5	2e-33
224112233	976	leucine rich repeat family protein with	0.988	0.169	0.523	8e-33
224142723	923	predicted protein [Populus trichocarpa]	0.940	0.170	0.531	2e-32
224142499	436	predicted protein [Populus trichocarpa]	0.940	0.360	0.505	3e-32
224145105	280	predicted protein [Populus trichocarpa]	0.982	0.585	0.508	3e-32
224142503	177	predicted protein [Populus trichocarpa]	0.946	0.892	0.497	4e-32
224142721	926	predicted protein [Populus trichocarpa]	0.982	0.177	0.508	1e-31
224073949	280	predicted protein [Populus trichocarpa]	0.982	0.585	0.514	1e-31
224142717	876	predicted protein [Populus trichocarpa]	0.988	0.188	0.505	2e-31

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 118/167 (70%), Gaps = 4/167 (2%)

Query: 2   VIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFNSLHH-WVDDEGATDCCQWERV 60
           VIM + ++++++G    GCL++ER ALL++K  F  P  S  H W  D    +CC+W++V
Sbjct: 10  VIMIINVVVLIQGWRCHGCLEEERVALLQIKDAFSYPNGSFPHSWGRD---ANCCEWKQV 66

Query: 61  ECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL 120
           +C++TT RV+++DLSF   W+L +  LNASLF PF +L +L L  N IAGC+ENEG ERL
Sbjct: 67  QCNSTTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGCLENEGFERL 126

Query: 121 SRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
           S L NL++L+L +N FN+SI SS+  LSSL +L L++N +EG I V+
Sbjct: 127 SVLGNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVE 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070712|ref|XP_002303209.1| predicted protein [Populus trichocarpa] gi|222840641|gb|EEE78188.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDP-FNSLHHWVDDEGATDCCQWER 59
           + ++ V++++ L+G    GCLD+ER ALL+LK   + P   SL  W+  +    CC WER
Sbjct: 8   LTVLLVIMMVSLQGWLPLGCLDEERIALLQLKDSLNHPNGTSLPSWIKAD--AHCCSWER 65

Query: 60  VECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER 119
           +ECS+ TGRV +L L    N ++ + YLN SLF PFQQL +L L  N IAG VE +G   
Sbjct: 66  IECSSRTGRVTELYLEETRNEEMGDWYLNTSLFLPFQQLNALSLWGNRIAGWVEKKGGYE 125

Query: 120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
           L RL NL  LDL  N F+NSILS V    SL SLYLY NRLEG ID+K
Sbjct: 126 LQRLRNLDYLDLGSNSFDNSILSFVEGFPSLKSLYLYYNRLEGLIDLK 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDP-FNSLHHWVDDEGATDCCQWER 59
           M+++ V+L++ L+G    GCL++ER ALL LK   + P   SL  W        CC WE 
Sbjct: 1   MLLVLVILMVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSW--RIAHAHCCDWES 58

Query: 60  VECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER 119
           + C+++TGRV  LDL  + N DL + YLNASLF PFQQL  LYL  N IAG VEN+G   
Sbjct: 59  IVCNSSTGRVTVLDLWGVRNEDLGDWYLNASLFLPFQQLNVLYLWNNRIAGWVENKGGSE 118

Query: 120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
           L +LSNL+ L L +N FNNSILS V  L SL SLYL  NRLEG ID+K
Sbjct: 119 LQKLSNLESLYLEDNSFNNSILSFVEGLPSLKSLYLSYNRLEGLIDLK 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 9   LIILEGGGSEGCLDQERFALLRLKLFFDDP-FNSLHHWVDDEGATDCCQWERVECSNTTG 67
           ++ L+G    GCL++ER ALL LK   + P   SL  W+  +G   CC WE + C ++TG
Sbjct: 1   MVSLQGWLPLGCLEEERIALLHLKDALNYPNGTSLPSWI--KGDAHCCDWESIICDSSTG 58

Query: 68  RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK 127
           RV +LDL  + + +L + YLNASLF PFQQL  LYL  N IAG VE +G    SRLSNL+
Sbjct: 59  RVTELDLEGVRDRELGDWYLNASLFLPFQQLNGLYLTANRIAGLVEKKGGYEQSRLSNLE 118

Query: 128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
            LDL  N F+NSILS V  LSSL SLYL  NRLEG ID+K
Sbjct: 119 YLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLK 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142499|ref|XP_002324594.1| predicted protein [Populus trichocarpa] gi|222866028|gb|EEF03159.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 113/172 (65%), Gaps = 15/172 (8%)

Query: 1   MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFN----SLHHWVDDEGATDCCQ 56
           MV++  +LL       S+GCL++ER ALL++K  F D  N     L  W  D     CC 
Sbjct: 14  MVMINAMLL-------SQGCLEEERIALLQIKTSFGDHPNDIASPLFSWGKD---ALCCS 63

Query: 57  WERVECSN-TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENE 115
           W+RV CSN TT RVI+++L F  +  +++ YLNAS+F PFQ+L  L L  N IAGCV NE
Sbjct: 64  WKRVTCSNSTTRRVIEINLYFTRDRSMEDLYLNASIFLPFQELNVLDLSGNGIAGCVANE 123

Query: 116 GIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
           G ERLSRL+ L++L LS+N FNNSILSS+  LSSL  L L  N+L+G+ID K
Sbjct: 124 GFERLSRLAKLEVLLLSDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTK 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145105|ref|XP_002336200.1| predicted protein [Populus trichocarpa] gi|222832534|gb|EEE71011.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 109/167 (65%), Gaps = 3/167 (1%)

Query: 2   VIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDP-FNSLHHWVDDEGATDCCQWERV 60
           V   +++ + L+G    GCL++ER ALL LK   + P   SL  W+  +    CC WE +
Sbjct: 7   VFTVLVITVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSWIKAD--AHCCDWESI 64

Query: 61  ECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL 120
            C+++TGRV +LDL  + N +L + YLNASLF PFQQL +L L  N IAG VEN+G   L
Sbjct: 65  GCNSSTGRVTELDLWSVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGYEL 124

Query: 121 SRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
            +LSNL++LDL  N FNNSILS V  L SL SLYL  NRLEG ID+K
Sbjct: 125 QKLSNLEILDLGYNSFNNSILSFVEGLPSLKSLYLDYNRLEGLIDLK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142503|ref|XP_002324596.1| predicted protein [Populus trichocarpa] gi|222866030|gb|EEF03161.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 109/171 (63%), Gaps = 13/171 (7%)

Query: 2   VIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDPFN----SLHHWVDDEGATDCCQW 57
           VIM +  +++     S+GCL++ER ALL++K  F D  N    SL  W  D     CC W
Sbjct: 13  VIMMINAMLL-----SQGCLEEERIALLQIKTSFGDHPNDIPSSLLSWGKD---ALCCSW 64

Query: 58  ERVECSN-TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG 116
           E V CSN TT RVI+++L F   W L++ YLNAS+F PFQ+L  L L  N IAGCV NEG
Sbjct: 65  EGVTCSNSTTRRVIEINLYFTRYWSLEDLYLNASIFLPFQELNVLDLSGNGIAGCVANEG 124

Query: 117 IERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
            ERLSRL+ L++L L +N  NNSILSS    SSL  LYL +N  + +ID+K
Sbjct: 125 FERLSRLAKLEVLSLGDNFLNNSILSSFKRFSSLKHLYLDNNGFQDSIDMK 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 108/167 (64%), Gaps = 3/167 (1%)

Query: 2   VIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDP-FNSLHHWVDDEGATDCCQWERV 60
           V+  +++ + L+G    GCL++ER ALL LK   + P   SL  W       +CC WER+
Sbjct: 7   VLTVLVITVSLQGWVPLGCLEEERIALLHLKDALNYPNGTSLPSW--RIAHANCCDWERI 64

Query: 61  ECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL 120
            C+++TGRV +L L    N +L + YLNASLF PFQQL  LYL  N IAG VE +G   L
Sbjct: 65  VCNSSTGRVTELYLGSTRNEELGDWYLNASLFLPFQQLNILYLWGNRIAGWVEKKGGYEL 124

Query: 121 SRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
            +LSNL++LDL  N FNNSILS V  L SL SLYL  NRLEG+ID+K
Sbjct: 125 QKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYNRLEGSIDLK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073949|ref|XP_002335892.1| predicted protein [Populus trichocarpa] gi|222836248|gb|EEE74669.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 109/167 (65%), Gaps = 3/167 (1%)

Query: 2   VIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDP-FNSLHHWVDDEGATDCCQWERV 60
           V+  +++ + L+G    GCL++ER ALL LK   + P   SL  W       +CC WER+
Sbjct: 7   VLTVLVITVSLQGWLPLGCLEEERIALLHLKDSLNYPNGTSLPSW--RIAHANCCDWERI 64

Query: 61  ECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL 120
            C+++TGRV  LDL  + N +L + YLNASLF PFQQL  L L +N IAG VEN+G   L
Sbjct: 65  VCNSSTGRVTLLDLLGVRNEELGDWYLNASLFLPFQQLNILDLWHNRIAGWVENKGGYEL 124

Query: 121 SRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
            +LSNL++LDL  N FNNSILS V  L SL SLYL  NRLEG ID+K
Sbjct: 125 QKLSNLEILDLEYNSFNNSILSFVERLPSLKSLYLDYNRLEGLIDLK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142717|ref|XP_002324701.1| predicted protein [Populus trichocarpa] gi|222866135|gb|EEF03266.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVIMFVLLLIILEGGGSEGCLDQERFALLRLKLFFDDP-FNSLHHWVDDEGATDCCQWER 59
           M ++  ++++ L+G  + GCL +ER ALL LK   + P   SL  W   +G T CC+WE 
Sbjct: 7   MSMVLAIMMVSLQGWVALGCLKEERIALLHLKDSLNYPNGTSLPSW--RKGDTRCCEWES 64

Query: 60  VECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER 119
           + CS+ TGRV  L L  + N +L + YLN SLF PFQQL SL L  N IAG VE +G   
Sbjct: 65  IVCSSRTGRVTGLYLWSVRNQELGDWYLNVSLFLPFQQLNSLILSDNRIAGWVEKKGGYG 124

Query: 120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK 167
           L +LSNLK+L L +N FNNSILS V  L SL +LYL  NRLEG ID+K
Sbjct: 125 LQKLSNLKILALEDNSFNNSILSFVEGLPSLKTLYLDYNRLEGLIDLK 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.862	0.147	0.383	2.3e-18
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.868	0.159	0.354	1.4e-16
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.862	0.154	0.352	1.8e-16
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.862	0.149	0.333	5.1e-16
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.610	0.140	0.389	5.8e-14
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.748	0.115	0.335	3.8e-11
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.826	0.158	0.335	9.8e-11
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.820	0.164	0.344	1.9e-10
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.802	0.170	0.346	2.3e-10
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.658	0.125	0.322	4e-09

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 61/159 (38%), Positives = 87/159 (54%)

Query:    20 CLDQERFALLRLKLFF-----DDPFNS-LHHWVDDEGATDCCQWERVECSNTTGRVIQLD 73
             C+++ER ALL LK +      D   +S L  W +D   ++CC+WE ++C+ T+GR+I+L 
Sbjct:    27 CIEKERKALLELKKYMISKTADWGLDSVLPTWTNDT-KSNCCRWEGLKCNQTSGRIIELS 85

Query:    74 LSFIGNWDLKER-YLNASLFTPFQQLESLYLE---YNNIAGCVEN-EGIERLSRLSNLKM 128
                IG  + KE   LN SL  PF++L SL L    YN   G  ++ EG E L RL NL++
Sbjct:    86 ---IGQTNFKESSLLNLSLLHPFEELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEI 142

Query:   129 LDLSENLFNNSILSSVAHXXXXXXXXXXXNRLEGNIDVK 167
             LDLS N FNNSI   +             N + G + +K
Sbjct:   143 LDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIK 181

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 55/155 (35%), Positives = 85/155 (54%)

Query:    20 CLDQERFALLRLKLFF-----DDPFNS-LHHWVDDEGATDCCQWERVECSNTTGRVIQLD 73
             C+++ER ALL LK F      +  ++S L  W +D   +DCCQWE ++C+ T+ R+    
Sbjct:    13 CIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDT-KSDCCQWENIKCNRTSRRLT--G 69

Query:    74 LSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVEN-EGIERLSRLSNLKMLDLS 132
             LS   ++ L+   LN SL  PF+++ SL L  + + G V++ EG + L RL NL++L+ S
Sbjct:    70 LSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFS 129

Query:   133 ENLFNNSILSSVAHXXXXXXXXXXXNRLEGNIDVK 167
              N FNNSI   +             N + G I +K
Sbjct:   130 SNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLK 164

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 56/159 (35%), Positives = 81/159 (50%)

Query:    20 CLDQERFALLRLKLFFDDPFNS------LHHWVDDEGATDCCQWERVECSNTTGRVIQLD 73
             C+++ER ALL LK +             L  W +D   +DCCQW+ ++C+ T+GRVI+L 
Sbjct:    13 CIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDT-KSDCCQWDGIKCNRTSGRVIELS 71

Query:    74 LSFIGNWDLKERY-LNASLFTPFQQLESLYLE---YNNIAGCVEN-EGIERLSRLSNLKM 128
                +G+   KE   LN SL  PF+++ SL L    YN   G  ++ EG   LS L NLK+
Sbjct:    72 ---VGDMYFKESSPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKI 128

Query:   129 LDLSENLFNNSILSSVAHXXXXXXXXXXXNRLEGNIDVK 167
             +DLS N FN S    +             N ++G   +K
Sbjct:   129 MDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIK 167

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 5.1e-16, P = 5.1e-16
 Identities = 51/153 (33%), Positives = 80/153 (52%)

Query:    20 CLDQERFALLRLKLFFDDPFNS---LHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSF 76
             C+D+E+ AL  L+        S   L  W +D   +DCC+W+ V C+  +GRV ++  SF
Sbjct:    27 CIDEEKIALFELRKHMISRTESESVLPTWTNDT-TSDCCRWKGVACNRVSGRVTEI--SF 83

Query:    77 IGNWDLKER-YLNASLFTPFQQLESLYLEYNNIAGCVEN-EGIERLSRLSNLKMLDLSEN 134
              G   LK+   LN SL  PF+ + SL L  +  +G  ++ EG + L +L  L++LDL+ N
Sbjct:    84 -GGLSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASN 142

Query:   135 LFNNSILSSVAHXXXXXXXXXXXNRLEGNIDVK 167
              FNNSI   ++            N ++G+   K
Sbjct:   143 KFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAK 175

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
 Identities = 44/113 (38%), Positives = 56/113 (49%)

Query:    20 CLDQERFALLRLKLFFD----DPFNSLHHWVDD-EGATDCCQWERVECSNTTGRVIQLDL 74
             CL  +R ALL  K  F     DP        +     TDCC W RV C   TG+V++LDL
Sbjct:    34 CLPDQRDALLEFKNEFYVQEFDPHMKCEKATETWRNKTDCCSWNRVSCDPKTGKVVELDL 93

Query:    75 -SFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNL 126
              S   N  L+    N+SLF   Q L+SL L  NNI+G +  + I  L  L +L
Sbjct:    94 MSSCLNGPLRS---NSSLFR-LQHLQSLELSSNNISGILP-DSIGNLKYLRSL 141

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 44/131 (33%), Positives = 64/131 (48%)

Query:    36 DDPFNSLHHWVDDEGATDCCQWERVECSNT-TGRVIQLDLSFIGN--WDLKERYLNASLF 92
             ++  + L  W   EG  DCC+WERV+CS+   G VI L L  +    ++ + R LN SL 
Sbjct:    21 EEGLSILKSWTHHEG--DCCRWERVKCSDAINGHVIGLSLDRLVPVAFESQTRSLNLSLL 78

Query:    93 TPFQQLESLYLEYNNIAGCVENE-GIERLSRLSNLKMLDLSENLFNNSILSSVAHXXXXX 151
               F QL+SL L +N      ++  G +    L  L  LD S N+F+NSI+  +       
Sbjct:    79 HSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTLDKLTTLDFSHNMFDNSIVPFLNAATSIR 138

Query:   152 XXXXXXNRLEG 162
                   N +EG
Sbjct:   139 SLHLESNYMEG 149

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 51/152 (33%), Positives = 76/152 (50%)

Query:    20 CLDQERFALLRLKLFFD--DP-FNSLHHWVDD-EGATDCCQWERVECSNTTGRVIQLDLS 75
             C  ++R ALL LK  F    P F+ LH   +     +DCC W+ + C++ +G V++LDLS
Sbjct:    39 CRLEQRDALLELKKEFKIKKPCFDGLHPTTESWANNSDCCYWDGITCNDKSGEVLELDLS 98

Query:    76 FIGNWDLKERY-LNASLFTPFQQ--LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLS 132
                   L+ R+  N+SLFT      L +L L YN  +G + +  IE  S L+ L   DLS
Sbjct:    99 ---RSCLQSRFHSNSSLFTVLNLRFLTTLDLSYNYFSGQIPS-CIENFSHLTTL---DLS 151

Query:   133 ENLFNNSILSSVAHXXXXXXXXXXXNRLEGNI 164
             +N F+  I SS+ +           N   G +
Sbjct:   152 KNYFSGGIPSSIGNLSQLTFLDLSGNEFVGEM 183

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 51/148 (34%), Positives = 66/148 (44%)

Query:    20 CLDQERFALLRLKLFFDDPFNSLHH--WVDDEGATDCCQWERVECSNTTGRVIQLDL-SF 76
             C   +R ALL LK  F    N  HH   +      DCC WE V C  T G VI L+L S+
Sbjct:    37 CRSDQRDALLELKKEFPIHSNGSHHVTTLSWNKTVDCCSWEGVTCDATLGEVISLNLVSY 96

Query:    77 IGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLF 136
             I N  LK    ++SLF   + L  L L + N+ G + +     +  LS+L  LDLS N  
Sbjct:    97 IANTSLKS---SSSLFK-LRHLRHLELSHCNLQGEIPSS----IGNLSHLTYLDLSFNQL 148

Query:   137 NNSILSSVAHXXXXXXXXXXXNRLEGNI 164
                   S+ +           N L GNI
Sbjct:   149 VGEFPVSIGNLNQLEYIDLWVNALGGNI 176

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 52/150 (34%), Positives = 68/150 (45%)

Query:    20 CLDQERFALLRLKLFF----DDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLS 75
             C   +R ALL  K  F      P  SL  W      +DCC WE V C + +G V+ LDLS
Sbjct:    37 CRHDQRDALLEFKHEFPVSESKPSPSLSSW---NKTSDCCFWEGVTCDDESGEVVSLDLS 93

Query:    76 FIG-NWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
             ++  N  LK     + LF   QQL++L L   ++ G V +     L  LS L  LDLS N
Sbjct:    94 YVLLNNSLKP---TSGLFK-LQQLQNLTLSDCHLYGEVTSS----LGNLSRLTHLDLSSN 145

Query:   135 LFNNSILSSVAHXXXXXXXXXXXNRLEGNI 164
                  +L+SV+            N   GNI
Sbjct:   146 QLTGEVLASVSKLNQLRDLLLSENSFSGNI 175

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 38/118 (32%), Positives = 56/118 (47%)

Query:    49 EGATDCCQWERVECSNTTGRVIQLDL--SFIGNWDLKERYLNASLFTPFQQLESLYLEYN 106
             E  +DCC W+ + C   TG VI++DL  S +  W       N S+   F  L +L L YN
Sbjct:    64 ENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNS--NLSMLQNFHFLTTLDLSYN 121

Query:   107 NIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHXXXXXXXXXXXNRLEGNI 164
             +++G + +     +  LS+L  LDLS N F+  I SS+ +           N   G I
Sbjct:   122 HLSGQISSS----IGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEI 175

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01520050 hypothetical protein (929 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 47/202 (23%)

Query: 2   VIMFVLLLIILEGGGSEGCLDQERFALL-RLKLFFDDPFNSLHHWVDDEGATDCCQWERV 60
            ++F+L  + L    +   L  E   LL   K   +DP   L +W     + D C W+ +
Sbjct: 11  YLIFMLFFLFL----NFSMLHAEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGI 63

Query: 61  ECSNTTGRVIQLDLS----------------FIGNWDLKERYLNASL----FTPFQQLES 100
            C+N++ RV+ +DLS                +I   +L    L+  +    FT    L  
Sbjct: 64  TCNNSS-RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 101 LYLEYNNIAGCVENEGIERLSRL------------------SNLKMLDLSENLFNNSILS 142
           L L  NN  G +    I  L  L                  S+LK+LDL  N+    I +
Sbjct: 123 LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 143 SVAHLSSLTSLYLYSNRLEGNI 164
           S+ +L+SL  L L SN+L G I
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQI 204

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
           + L+ +YL YNN++G +  E    +  L++L  LDL  N     I SS+ +L +L  L+L
Sbjct: 212 KSLKWIYLGYNNLSGEIPYE----IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 156 YSNRLEGNI 164
           Y N+L G I
Sbjct: 268 YQNKLSGPI 276

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 23/152 (15%)

Query: 21  LDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNW 80
           L +E  AL  LK     P      W  D        W   +C        Q D S  G W
Sbjct: 370 LLEEVSALQTLKSSLGLP--LRFGWNGDPCVPQQHPWSGADC--------QFD-STKGKW 418

Query: 81  -----DLKERYLNASL---FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLS 132
                 L  + L   +    +  + L+S+ L  N+I G +       L  +++L++LDLS
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLS 474

Query: 133 ENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164
            N FN SI  S+  L+SL  L L  N L G +
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.8 bits (96), Expect = 9e-06
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 21 LDQERFALLRLKLFF-DDPFNSLHHWVDDEGATDCCQWERVECS 63
          L+ +R ALL  K     DP  +L  W     ++D C W  V C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 97  QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLY 156
            L+ L L  N   G     G+        L+ LDLS N F+ ++   +  LS L  L L 
Sbjct: 453 SLQMLSLARNKFFG-----GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 157 SNRLEGNI 164
            N+L G I
Sbjct: 508 ENKLSGEI 515

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 97  QLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
            L+SL L  N +        I       L NLK+LDLS N   +    + + L SL SL 
Sbjct: 1   NLKSLDLSNNRL------TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Query: 155 LYSNRL 160
           L  N L
Sbjct: 55  LSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                +L  L L  N ++G + +E    LS    L  LDLS N  +  I +S + +  L+
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 152 SLYLYSNRLEGNI 164
            L L  N+L G I
Sbjct: 551 QLDLSQNQLSGEI 563

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
           L+ L+L  N ++G +       +  L  L  LDLS+N  +  I   V  L +L  L+L+S
Sbjct: 262 LQYLFLYQNKLSGPIPPS----IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Query: 158 NRLEGNIDV 166
           N   G I V
Sbjct: 318 NNFTGKIPV 326

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PLN03150	623	hypothetical protein; Provisional	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.2
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	99.08
PLN03150	623	hypothetical protein; Provisional	99.01
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.7
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.67
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.62
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.48
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.39
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.36
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.36
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.33
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.27
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.18
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.11
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.09
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.08
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.06
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.05
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.01
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.69
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.52
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.91
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.8
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.38
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.01
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.44
smart00370	26	LRR Leucine-rich repeats, outliers.	95.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.4
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.27
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.17
smart00370	26	LRR Leucine-rich repeats, outliers.	94.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	93.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.02
PRK15386	426	type III secretion protein GogB; Provisional	91.88
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.1
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.19
PRK15386	426	type III secretion protein GogB; Provisional	88.57
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	83.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	83.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	80.27

>PLN03150 hypothetical protein; Provisional

Probab=99.85  E-value=6.7e-21  Score=161.21  Aligned_cols=139  Identities=29%  Similarity=0.375  Sum_probs=116.4

Q ss_pred             CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcceeeEEEeCCC----CCEEEEEcCCCCCCCccccccCCccc
Q 043924           17 SEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTT----GRVIQLDLSFIGNWDLKERYLNASLF   92 (167)
Q Consensus        17 ~~~~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~C~~~~----~~v~~L~L~~~~l~~l~~~~l~~~~~   92 (167)
                      ...+.++|++||+++|+.+..+.  ..+|.++.|.+..|.|.||.|....    ..|+.|+|+++.+...     .+..+
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~-----ip~~i  438 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF-----IPNDI  438 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCcccc-----CCHHH
Confidence            34567789999999999985432  2489875544444589999996311    2589999999988632     14457


Q ss_pred             cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           93 TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      ..+++|+.|+|++|.+.|.+|..    ++.+++|+.|+|++|+++|.+|+.++++++|++|+|++|+++|.+|.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence            88999999999999999999988    99999999999999999999999999999999999999999999996

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=1.1e-19  Score=160.43  Aligned_cols=141  Identities=32%  Similarity=0.493  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcceeeEEEeCCCCCEEEEEcCCCCCCCcc-----------c-----
Q 043924           21 LDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLK-----------E-----   84 (167)
Q Consensus        21 ~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~l~-----------~-----   84 (167)
                      .+.|+.+|++||+++.++...+.+|+...   ++|.|.||+|+. .++|+.|+|+++.+....           .     
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~---~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~  102 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSA---DVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN  102 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCC---CCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence            45899999999999965656788998766   899999999986 578999999988754211           0     


Q ss_pred             cc----cCCccccCCCCccEEEcCCCceeeecCccc------------------ccccCCCCCCCEEeCcCCcCCchhhH
Q 043924           85 RY----LNASLFTPFQQLESLYLEYNNIAGCVENEG------------------IERLSRLSNLKMLDLSENLFNNSILS  142 (167)
Q Consensus        85 ~~----l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~------------------~~~~~~l~~L~~L~ls~N~l~g~iP~  142 (167)
                      +.    ++...+..+++|++|++++|.++|.+|...                  +..++++++|++|++++|.+.+.+|.
T Consensus       103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  182 (968)
T PLN00113        103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN  182 (968)
T ss_pred             CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence            11    111112244555555555555544444210                  01145555555555555555555555


Q ss_pred             hhhcCCCCCEEECcCCcceecCC
Q 043924          143 SVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       143 ~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .++++++|++|++++|+++|.+|
T Consensus       183 ~~~~l~~L~~L~L~~n~l~~~~p  205 (968)
T PLN00113        183 SLTNLTSLEFLTLASNQLVGQIP  205 (968)
T ss_pred             hhhhCcCCCeeeccCCCCcCcCC
Confidence            55555555555555555555555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.29  E-value=4.6e-12  Score=112.30  Aligned_cols=72  Identities=26%  Similarity=0.418  Sum_probs=54.7

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .+..+++|++|++++|.++|.+|..    +..+++|+.|++++|+++|.+|..+.++++|++|++++|+++|.||+
T Consensus       518 ~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        518 ELSSCKKLVSLDLSHNQLSGQIPAS----FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             HHcCccCCCEEECCCCcccccCChh----HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            3556677777777777777777766    77777777777777777777777777777788888888888777775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.20  E-value=1.7e-11  Score=73.40  Aligned_cols=61  Identities=34%  Similarity=0.437  Sum_probs=52.9

Q ss_pred             CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcc
Q 043924           96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRL  160 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l  160 (167)
                      ++|++|++++|+++. +|+.   .|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~-i~~~---~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE-IPPD---SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE-ECTT---TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc-cCHH---HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            478999999999984 5543   289999999999999999977778899999999999999985

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=99.08  E-value=1.8e-10  Score=64.12  Aligned_cols=41  Identities=37%  Similarity=0.746  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCcceeeEEEe
Q 043924           22 DQERFALLRLKLFFD-DPFNSLHHWVDDEGATDCCQWERVECS   63 (167)
Q Consensus        22 ~~~~~aL~~~k~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~C~   63 (167)
                      ++|++||++||+++. ++...+.+|+... ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence            679999999999995 5567899999862 1299999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PLN03150 hypothetical protein; Provisional

Probab=99.01  E-value=3.1e-10  Score=96.60  Aligned_cols=66  Identities=29%  Similarity=0.460  Sum_probs=63.3

Q ss_pred             CccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           97 QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        97 ~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .++.|+|++|.+.|.+|..    +..+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~  484 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE  484 (623)
T ss_pred             EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence            4788999999999999998    99999999999999999999999999999999999999999999996

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.89  E-value=1.1e-10  Score=83.43  Aligned_cols=84  Identities=24%  Similarity=0.296  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ..+++++.|++|.++.+      ++.+..+.+|+.|++++|++. .+|..    ++.++.|++|+++-|++. .+|..|+
T Consensus        32 ~s~ITrLtLSHNKl~~v------ppnia~l~nlevln~~nnqie-~lp~~----issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVV------PPNIAELKNLEVLNLSNNQIE-ELPTS----ISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             hhhhhhhhcccCceeec------CCcHHHhhhhhhhhcccchhh-hcChh----hhhchhhhheecchhhhh-cCccccC
Confidence            46789999999998755      344677889999999999987 57777    899999999999999987 7888999


Q ss_pred             cCCCCCEEECcCCcce
Q 043924          146 HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       146 ~l~~L~~L~L~~N~ls  161 (167)
                      .++.|+.|||++|+++
T Consensus       100 s~p~levldltynnl~  115 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLN  115 (264)
T ss_pred             CCchhhhhhccccccc
Confidence            9999999999999886

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=5.8e-09  Score=62.24  Aligned_cols=60  Identities=33%  Similarity=0.422  Sum_probs=51.7

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLF  136 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l  136 (167)
                      +++.|++++|.+..+.     ...|..+++|++|++++|.++..-|..    |..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~-----~~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIP-----PDSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEEC-----TTTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccC-----HHHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence            5788999999887553     567889999999999999998665555    99999999999999985

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=4.7e-09  Score=75.72  Aligned_cols=82  Identities=29%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccccccc-CCCCCCCEEeCcCCcCCch-hhHhhh
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL-SRLSNLKMLDLSENLFNNS-ILSSVA  145 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~-~~l~~L~~L~ls~N~l~g~-iP~~l~  145 (167)
                      ++..|++++|.+..+..       +..++.|+.|++++|.++. +.+.    + ..+++|++|++++|++... --..+.
T Consensus        43 ~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~~-i~~~----l~~~lp~L~~L~L~~N~I~~l~~l~~L~  110 (175)
T PF14580_consen   43 KLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRISS-ISEG----LDKNLPNLQELYLSNNKISDLNELEPLS  110 (175)
T ss_dssp             T--EEE-TTS--S--TT-----------TT--EEE--SS---S--CHH----HHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred             CCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCCc-cccc----hHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence            45666666666654432       3446666667777776653 3322    2 2456666777777766531 113455


Q ss_pred             cCCCCCEEECcCCcce
Q 043924          146 HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       146 ~l~~L~~L~L~~N~ls  161 (167)
                      .+++|++|+|.+|.++
T Consensus       111 ~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen  111 SLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             G-TT--EEE-TT-GGG
T ss_pred             cCCCcceeeccCCccc
Confidence            6667777777777665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.70  E-value=7.1e-09  Score=82.59  Aligned_cols=87  Identities=25%  Similarity=0.282  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc--------------------ccccCCCCCC
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG--------------------IERLSRLSNL  126 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~--------------------~~~~~~l~~L  126 (167)
                      .+++.++|++|-+.++      |..++.+..|+.|++++|+|. .+|...                    +..+.+|.+|
T Consensus       435 ~kLt~L~L~NN~Ln~L------P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLNDL------PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             hcceeeecccchhhhc------chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            3455566666655443      334556777888888888775 344321                    1247889999


Q ss_pred             CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      .+|||.+|.+. .+|+.+++|++|++|++++|.|+
T Consensus       508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999998 78999999999999999999998

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.67  E-value=1.8e-08  Score=72.71  Aligned_cols=81  Identities=31%  Similarity=0.429  Sum_probs=28.4

Q ss_pred             CCEEEEEcCCCCCCCccccccCCcccc-CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhh-
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFT-PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV-  144 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~-~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l-  144 (167)
                      .+.+.|+|.++.++.+..       ++ .+.+|+.|++++|.++. ++.     +..++.|++|++++|+++. +++.+ 
T Consensus        19 ~~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~~-l~~-----l~~L~~L~~L~L~~N~I~~-i~~~l~   84 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQITK-LEG-----LPGLPRLKTLDLSNNRISS-ISEGLD   84 (175)
T ss_dssp             -----------------S---------TT-TT--EEE-TTS--S---TT---------TT--EEE--SS---S--CHHHH
T ss_pred             cccccccccccccccccc-------hhhhhcCCCEEECCCCCCcc-ccC-----ccChhhhhhcccCCCCCCc-cccchH
Confidence            357889999999876543       33 47899999999999984 443     7889999999999999994 54444 


Q ss_pred             hcCCCCCEEECcCCcce
Q 043924          145 AHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       145 ~~l~~L~~L~L~~N~ls  161 (167)
                      ..+++|++|++++|++.
T Consensus        85 ~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             HH-TT--EEE-TTS---
T ss_pred             HhCCcCCEEECcCCcCC
Confidence            47999999999999986

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.62  E-value=4.8e-08  Score=54.46  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 45555666666666666666665

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.57  E-value=2.3e-08  Score=79.72  Aligned_cols=94  Identities=26%  Similarity=0.273  Sum_probs=73.8

Q ss_pred             CCEEEEEcCCCCCCCccc------------------cccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCE
Q 043924           67 GRVIQLDLSFIGNWDLKE------------------RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKM  128 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~------------------~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~  128 (167)
                      .-|+.++++.|.+..++.                  ..+.+..+..+++|..|+|++|.+. .+|.+    ++.+..|+.
T Consensus       388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e----~~~lv~Lq~  462 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE----MGSLVRLQT  462 (565)
T ss_pred             cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh----hhhhhhhhe
Confidence            348999999998753332                  1234566778999999999999987 68988    899999999


Q ss_pred             EeCcCCcCC----------------------chhhH-hhhcCCCCCEEECcCCcceecCCC
Q 043924          129 LDLSENLFN----------------------NSILS-SVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       129 L~ls~N~l~----------------------g~iP~-~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      ||++.|+|.                      |.++. .+.+|.+|+.|||.+|.+. .||+
T Consensus       463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp  522 (565)
T KOG0472|consen  463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP  522 (565)
T ss_pred             ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence            999999886                      22222 3677889999999999988 6775

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.56  E-value=1e-08  Score=81.39  Aligned_cols=102  Identities=23%  Similarity=0.294  Sum_probs=73.4

Q ss_pred             CCCCcceee-----EEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc
Q 043924           51 ATDCCQWER-----VECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG  116 (167)
Q Consensus        51 ~~~~c~w~g-----v~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~  116 (167)
                      .|.||.-.+     |.|+.         .+...+.|+|..|.++.++     +..|..+++|+.|||++|.|+..-|.. 
T Consensus        37 CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP-----~~aF~~l~~LRrLdLS~N~Is~I~p~A-  110 (498)
T KOG4237|consen   37 CPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIP-----PGAFKTLHRLRRLDLSKNNISFIAPDA-  110 (498)
T ss_pred             CCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCC-----hhhccchhhhceecccccchhhcChHh-
Confidence            335665433     78874         2566889999999998654     677999999999999999999776776 


Q ss_pred             ccccCCCCCCCEEeCcC-CcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          117 IERLSRLSNLKMLDLSE-NLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       117 ~~~~~~l~~L~~L~ls~-N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                         |..+.+|..|-+.+ |+|+...-..|++|.+|+-|.+.-|++.
T Consensus       111 ---F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen  111 ---FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             ---hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence               77777766655544 8887444445666666666666655554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.52  E-value=3e-09  Score=76.16  Aligned_cols=66  Identities=32%  Similarity=0.428  Sum_probs=38.6

Q ss_pred             cccCCCCccEEEcCCCceeee-cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           91 LFTPFQQLESLYLEYNNIAGC-VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~-ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      .|+.++.|+.|||.+|++... +|..    |-.++.|+-|+|+.|.|. .+|..++++++|+.|.+..|.+-
T Consensus        97 gfgs~p~levldltynnl~e~~lpgn----ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGN----FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcc----hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence            345555555555555555432 3433    444455555555555555 56667777788888877777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.48  E-value=1.3e-07  Score=82.02  Aligned_cols=41  Identities=29%  Similarity=0.264  Sum_probs=35.2

Q ss_pred             CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924          125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +|+.|++++|+++ .+|..+.++++|+.|+|++|+|+|.+|.
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            5677888888887 6899999999999999999999998663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.39  E-value=3e-08  Score=85.59  Aligned_cols=84  Identities=26%  Similarity=0.297  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ..++..|+|++|.+..+     +...+.++..|+.|+||+|.++ .+|..    +.++..|++|...+|++. ..| ++.
T Consensus       382 ~~hLKVLhLsyNrL~~f-----pas~~~kle~LeeL~LSGNkL~-~Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~  449 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSF-----PASKLRKLEELEELNLSGNKLT-TLPDT----VANLGRLHTLRAHSNQLL-SFP-ELA  449 (1081)
T ss_pred             ccceeeeeecccccccC-----CHHHHhchHHhHHHhcccchhh-hhhHH----HHhhhhhHHHhhcCCcee-ech-hhh
Confidence            35788899999988654     3456778888899999999887 57766    666666666666666665 455 566


Q ss_pred             cCCCCCEEECcCCcce
Q 043924          146 HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       146 ~l~~L~~L~L~~N~ls  161 (167)
                      ++++|+++|++.|+++
T Consensus       450 ~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hcCcceEEecccchhh
Confidence            6666666666666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.36  E-value=5.8e-07  Score=74.91  Aligned_cols=92  Identities=25%  Similarity=0.261  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCCCCCCcccc-------------------ccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCC
Q 043924           66 TGRVIQLDLSFIGNWDLKER-------------------YLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNL  126 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L  126 (167)
                      .++++.|+|.+|.++++..-                   .++-+.|..-.++++|+|++|.++..--..    |..+.+|
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL  199 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSL  199 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc----ccccchh
Confidence            57888999998887643321                   111233444456777888888776433333    7888889


Q ss_pred             CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      .+|.|+.|+++...+..|.+|++|+.|+|..|++.
T Consensus       200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             eeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            99999999998666667888999999999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.36  E-value=4e-07  Score=75.82  Aligned_cols=85  Identities=24%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      ..+..|++++|.+.++.     ...|.++++|+.+++..|.++ .||..    .....+|+.|+|.+|.++..-.+++..
T Consensus        78 ~~t~~LdlsnNkl~~id-----~~~f~nl~nLq~v~l~~N~Lt-~IP~f----~~~sghl~~L~L~~N~I~sv~se~L~~  147 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHID-----FEFFYNLPNLQEVNLNKNELT-RIPRF----GHESGHLEKLDLRHNLISSVTSEELSA  147 (873)
T ss_pred             cceeeeeccccccccCc-----HHHHhcCCcceeeeeccchhh-hcccc----cccccceeEEeeeccccccccHHHHHh
Confidence            44667999999887543     344566777777777777665 45653    222233555555555555444445555


Q ss_pred             CCCCCEEECcCCcce
Q 043924          147 LSSLTSLYLYSNRLE  161 (167)
Q Consensus       147 l~~L~~L~L~~N~ls  161 (167)
                      ++.|++|||+.|.++
T Consensus       148 l~alrslDLSrN~is  162 (873)
T KOG4194|consen  148 LPALRSLDLSRNLIS  162 (873)
T ss_pred             Hhhhhhhhhhhchhh
Confidence            555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.33  E-value=1.1e-07  Score=79.84  Aligned_cols=83  Identities=30%  Similarity=0.349  Sum_probs=56.2

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      ..++.|||++|.+...+      ..+..-.++..|+||+|++. .||..   -|-+++-|-+||||+|++. .+|+.+.+
T Consensus       103 ~dLt~lDLShNqL~EvP------~~LE~AKn~iVLNLS~N~Ie-tIPn~---lfinLtDLLfLDLS~NrLe-~LPPQ~RR  171 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVP------TNLEYAKNSIVLNLSYNNIE-TIPNS---LFINLTDLLFLDLSNNRLE-MLPPQIRR  171 (1255)
T ss_pred             ccceeeecchhhhhhcc------hhhhhhcCcEEEEcccCccc-cCCch---HHHhhHhHhhhccccchhh-hcCHHHHH
Confidence            45677888888776442      23444566677777777775 56654   2566777777777777776 56666777


Q ss_pred             CCCCCEEECcCCcc
Q 043924          147 LSSLTSLYLYSNRL  160 (167)
Q Consensus       147 l~~L~~L~L~~N~l  160 (167)
                      |..|++|.|++|.+
T Consensus       172 L~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPL  185 (1255)
T ss_pred             HhhhhhhhcCCChh
Confidence            77777777777754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=9.1e-07  Score=49.25  Aligned_cols=38  Identities=42%  Similarity=0.545  Sum_probs=32.3

Q ss_pred             CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc
Q 043924           96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN  138 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g  138 (167)
                      ++|++|++++|+++ .+|+.    +++|++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~----l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPE----LSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGH----GTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCch----HhCCCCCCEEEecCCCCCC
Confidence            47899999999998 57877    8999999999999999983

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.27  E-value=8.3e-06  Score=70.97  Aligned_cols=39  Identities=10%  Similarity=0.027  Sum_probs=28.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhcCCCCCCCCC----CCCCCCCCCCCcce
Q 043924           15 GGSEGCLDQERFALLRLKLFFDDPFNSLH----HWVDDEGATDCCQW   57 (167)
Q Consensus        15 ~~~~~~~~~~~~aL~~~k~~~~~~~~~~~----~W~~~~~~~~~c~w   57 (167)
                      =..+++.++|...+.++.+.+..| ....    +|.+..   ++|.-
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~l~~p-~~~~~~~~~~~~~~---~fc~~   97 (754)
T PRK15370         55 HPPETASPEEIKSKFECLRMLAFP-AYADNIQYSRGGAD---QYCIL   97 (754)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCC-chhhccccccCCCC---ccccc
Confidence            357778899999999999888433 2333    488876   78853

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.22  E-value=2.3e-07  Score=78.02  Aligned_cols=67  Identities=30%  Similarity=0.296  Sum_probs=40.9

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH-hhhcCCCCCEEECcCCcceecCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS-SVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~-~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +-.+..|+.||||+|++. ..|..    +..-+++-+|+||+|++. .||. -|.+|+.|-+|||++|++. ++|
T Consensus        99 iF~l~dLt~lDLShNqL~-EvP~~----LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LP  166 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLR-EVPTN----LEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLP  166 (1255)
T ss_pred             hcccccceeeecchhhhh-hcchh----hhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcC
Confidence            344666666666666665 45555    566666666666666666 4443 3456666666777766665 444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.18  E-value=1.9e-07  Score=64.49  Aligned_cols=88  Identities=26%  Similarity=0.243  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ..+++.++|++|.+.+++     ...-..++.++.|++++|.++ .+|.+    +..++.|+.|+++.|.|. ..|..+.
T Consensus        52 ~~el~~i~ls~N~fk~fp-----~kft~kf~t~t~lNl~~neis-dvPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~  120 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFP-----KKFTIKFPTATTLNLANNEIS-DVPEE----LAAMPALRSLNLRFNPLN-AEPRVIA  120 (177)
T ss_pred             CceEEEEecccchhhhCC-----HHHhhccchhhhhhcchhhhh-hchHH----HhhhHHhhhcccccCccc-cchHHHH
Confidence            567899999999887542     233344668899999999998 68988    999999999999999998 6788788


Q ss_pred             cCCCCCEEECcCCcceecCC
Q 043924          146 HLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .|.++-.|+..+|.+. +||
T Consensus       121 ~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen  121 PLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             HHHhHHHhcCCCCccc-cCc
Confidence            8999999999888765 454

>PLN03210 Resistant to P

Probab=98.11  E-value=9.1e-06  Score=74.01  Aligned_cols=70  Identities=20%  Similarity=0.137  Sum_probs=44.5

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +..+++|++|+++++...+.+|.     ++.+++|++|++++|..-..+|..++++++|+.|+++++..-+.+|.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            34566777777776654455553     56677777777776655556677777777777777766544445553

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.09  E-value=2.6e-06  Score=66.34  Aligned_cols=64  Identities=31%  Similarity=0.413  Sum_probs=31.4

Q ss_pred             CCCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCcce
Q 043924           94 PFQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      .+++|++|++++|.+++.    ++..    +..+++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEG----LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHH----HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            344555555555555531    1111    33344555566655555432    2233444555566666555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.08  E-value=9.6e-07  Score=76.62  Aligned_cols=85  Identities=29%  Similarity=0.324  Sum_probs=70.3

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      ++.+|++++|.+...      |..+..+.+|+.|+++.|.+. ..|..    .+++.+|+++.|..|++. ..|..+..+
T Consensus        46 ~L~~l~lsnn~~~~f------p~~it~l~~L~~ln~s~n~i~-~vp~s----~~~~~~l~~lnL~~n~l~-~lP~~~~~l  113 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSF------PIQITLLSHLRQLNLSRNYIR-SVPSS----CSNMRNLQYLNLKNNRLQ-SLPASISEL  113 (1081)
T ss_pred             eeEEeeccccccccC------CchhhhHHHHhhcccchhhHh-hCchh----hhhhhcchhheeccchhh-cCchhHHhh
Confidence            378999999987654      334667888999999999887 56766    889999999999998887 789999999


Q ss_pred             CCCCEEECcCCcceecCC
Q 043924          148 SSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG~iP  165 (167)
                      .+|++|++++|+|. .+|
T Consensus       114 knl~~LdlS~N~f~-~~P  130 (1081)
T KOG0618|consen  114 KNLQYLDLSFNHFG-PIP  130 (1081)
T ss_pred             hcccccccchhccC-CCc
Confidence            99999999999886 666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.07  E-value=2.1e-06  Score=66.83  Aligned_cols=66  Identities=26%  Similarity=0.288  Sum_probs=40.9

Q ss_pred             CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc----hhhHhhhcCCCCCEEECcCCcce
Q 043924           96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN----SILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ++|+.|++++|.+++.........+..+++|++|++++|.+++    .++..+..+++|++|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            6677777777777643222111125566677777777777774    23444555667777777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.06  E-value=3.3e-06  Score=68.10  Aligned_cols=86  Identities=30%  Similarity=0.377  Sum_probs=65.4

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCC-CccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQ-QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~-~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .++.+++.++.+..+.      .....+. +|+.|++++|.+. .+|..    +..+++|+.|++++|+++ .+|...+.
T Consensus       117 ~l~~L~l~~n~i~~i~------~~~~~~~~nL~~L~l~~N~i~-~l~~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~  184 (394)
T COG4886         117 NLTSLDLDNNNITDIP------PLIGLLKSNLKELDLSDNKIE-SLPSP----LRNLPNLKNLDLSFNDLS-DLPKLLSN  184 (394)
T ss_pred             ceeEEecCCcccccCc------cccccchhhcccccccccchh-hhhhh----hhccccccccccCCchhh-hhhhhhhh
Confidence            4677777777776553      2234453 8999999999987 45544    788999999999999998 67776668


Q ss_pred             CCCCCEEECcCCcceecCCC
Q 043924          147 LSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +++|+.|++++|+++ .||.
T Consensus       185 ~~~L~~L~ls~N~i~-~l~~  203 (394)
T COG4886         185 LSNLNNLDLSGNKIS-DLPP  203 (394)
T ss_pred             hhhhhheeccCCccc-cCch
Confidence            888999999999887 5554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.05  E-value=1.7e-06  Score=68.96  Aligned_cols=68  Identities=25%  Similarity=0.321  Sum_probs=48.7

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~  163 (167)
                      |..|++|++|+|++|.+++.-+..    |..+..++.|.|..|++.-.--..|.++..|+.|+|.+|+++--
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhh----hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence            667888888888888888655554    66777777777777777654455667777777777777777643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.02  E-value=1.3e-05  Score=69.77  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=23.1

Q ss_pred             CCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          124 SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       124 ~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ++|++|++++|+++ .+|..+.  ++|++|++++|+|+
T Consensus       262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        262 SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            35677777777776 4565443  46777777777776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.01  E-value=3.7e-06  Score=65.33  Aligned_cols=84  Identities=37%  Similarity=0.415  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchh-----
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSI-----  140 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~i-----  140 (167)
                      ...++.+||++|.++.+..      ...-+++++.|++|+|.+.- +..     +..+++|+.||||+|.++...     
T Consensus       283 Wq~LtelDLS~N~I~~iDE------SvKL~Pkir~L~lS~N~i~~-v~n-----La~L~~L~~LDLS~N~Ls~~~Gwh~K  350 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDE------SVKLAPKLRRLILSQNRIRT-VQN-----LAELPQLQLLDLSGNLLAECVGWHLK  350 (490)
T ss_pred             Hhhhhhccccccchhhhhh------hhhhccceeEEeccccceee-ehh-----hhhcccceEeecccchhHhhhhhHhh
Confidence            4456777888877654421      23345677777777777752 221     566677777777777654210     


Q ss_pred             ----------------hHhhhcCCCCCEEECcCCcce
Q 043924          141 ----------------LSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       141 ----------------P~~l~~l~~L~~L~L~~N~ls  161 (167)
                                      -..++++-+|..||+.+|++.
T Consensus       351 LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hcCEeeeehhhhhHhhhhhhHhhhhheeccccccchh
Confidence                            022455666777777777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.92  E-value=2e-05  Score=68.68  Aligned_cols=33  Identities=15%  Similarity=0.067  Sum_probs=17.7

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCcee
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIA  109 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~  109 (167)
                      +++.|++.+|+++.++.         ..++|++|++++|+++
T Consensus       223 ~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLT  255 (788)
T ss_pred             CCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccC
Confidence            45566666665554321         1345666666666655

>PLN03210 Resistant to P

Probab=97.86  E-value=3.2e-05  Score=70.54  Aligned_cols=69  Identities=20%  Similarity=0.141  Sum_probs=52.9

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +..+++|++|++++|.....+|..    +..+++|+.|+++++..-+.+|..+ ++++|+.|++++|...+.+|
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            566788999999988777778887    8889999999998866555777655 67778888887776555554

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.70  E-value=1.1e-05  Score=62.74  Aligned_cols=61  Identities=30%  Similarity=0.348  Sum_probs=52.2

Q ss_pred             CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ....|+.+|||+|.++ .|.+.    ..-++.++.|++|+|.+. .+. .++.+++|+.|||++|.++
T Consensus       282 TWq~LtelDLS~N~I~-~iDES----vKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDES----VKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hHhhhhhccccccchh-hhhhh----hhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH
Confidence            4578999999999997 56665    778899999999999998 443 3899999999999999876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.70  E-value=1.3e-05  Score=70.88  Aligned_cols=71  Identities=24%  Similarity=0.284  Sum_probs=62.1

Q ss_pred             CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecC
Q 043924           89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI  164 (167)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~i  164 (167)
                      ...|..++.|++|||++|.=-+.+|..    ++.|-+|++|++++..++ .+|..+++|.+|.+|++..+.-...+
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             HHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc
Confidence            345778999999999998877889998    999999999999999998 89999999999999999887654333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=8.4e-06  Score=63.16  Aligned_cols=87  Identities=25%  Similarity=0.255  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch-hhHhhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS-ILSSVA  145 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~-iP~~l~  145 (167)
                      .+|..+||.+|.+++....   +..+..++.|++|+++.|.+...|-..    -..+.+|++|-|.+..+... .-..+.
T Consensus        71 ~~v~elDL~~N~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             hhhhhhhcccchhccHHHH---HHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence            4688899999988765543   456778999999999999998776553    24567899999999888763 344567


Q ss_pred             cCCCCCEEECcCCcc
Q 043924          146 HLSSLTSLYLYSNRL  160 (167)
Q Consensus       146 ~l~~L~~L~L~~N~l  160 (167)
                      .+|.++.|+++.|++
T Consensus       144 ~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSL  158 (418)
T ss_pred             cchhhhhhhhccchh
Confidence            888899999998854

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.68  E-value=7.7e-06  Score=56.70  Aligned_cols=65  Identities=20%  Similarity=0.288  Sum_probs=54.8

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccC-CCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLS-RLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~-~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +....+|+..+|++|.|. .+|+.    |. ..+.++++++++|+++ .+|.+++.++.|+.|+++.|.|.-
T Consensus        49 l~~~~el~~i~ls~N~fk-~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFK-KFPKK----FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             HhCCceEEEEecccchhh-hCCHH----Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc
Confidence            345678899999999998 46665    54 3457899999999998 799999999999999999999873

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.63  E-value=4e-06  Score=69.65  Aligned_cols=65  Identities=25%  Similarity=0.281  Sum_probs=51.5

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      .++.+.+|+.|.+..|++. .+|++    +..| .|..||+|.|+++ .||-.|.+|+.|++|.|.+|.++.
T Consensus       184 ql~~l~slr~l~vrRn~l~-~lp~E----l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRRNHLE-DLPEE----LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HhhhHHHHHHHHHhhhhhh-hCCHH----HhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            3556667777777777765 45665    6644 4889999999998 799999999999999999999873

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.57  E-value=7.2e-06  Score=70.07  Aligned_cols=80  Identities=25%  Similarity=0.308  Sum_probs=46.2

Q ss_pred             EEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC
Q 043924           69 VIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS  148 (167)
Q Consensus        69 v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~  148 (167)
                      +..|+|++|++....       .+..+++|+.|||++|.+. .+|..   +...+. |+.|.+.+|.++. + ..+.+|.
T Consensus       189 le~LnLshNk~~~v~-------~Lr~l~~LkhLDlsyN~L~-~vp~l---~~~gc~-L~~L~lrnN~l~t-L-~gie~Lk  254 (1096)
T KOG1859|consen  189 LESLNLSHNKFTKVD-------NLRRLPKLKHLDLSYNCLR-HVPQL---SMVGCK-LQLLNLRNNALTT-L-RGIENLK  254 (1096)
T ss_pred             hhhhccchhhhhhhH-------HHHhcccccccccccchhc-ccccc---chhhhh-heeeeecccHHHh-h-hhHHhhh
Confidence            445566666554332       2445777777777777776 45542   122232 6666666666652 2 2356677


Q ss_pred             CCCEEECcCCccee
Q 043924          149 SLTSLYLYSNRLEG  162 (167)
Q Consensus       149 ~L~~L~L~~N~lsG  162 (167)
                      +|+.||+++|-++|
T Consensus       255 sL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSE  268 (1096)
T ss_pred             hhhccchhHhhhhc
Confidence            77777777776664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.52  E-value=4.6e-05  Score=62.14  Aligned_cols=81  Identities=35%  Similarity=0.376  Sum_probs=58.6

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      ..+..+++.+|.+..+..      .+..+++|++|++++|.++...+      +..++.|+.|++++|.++. + ..+..
T Consensus        95 ~~l~~l~l~~n~i~~i~~------~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~~-~-~~~~~  160 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIEN------LLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLISD-I-SGLES  160 (414)
T ss_pred             cceeeeeccccchhhccc------chhhhhcchheeccccccccccc------hhhccchhhheeccCcchh-c-cCCcc
Confidence            457788888888765532      15568888888888888874333      5677778888888888873 3 23555


Q ss_pred             CCCCCEEECcCCcce
Q 043924          147 LSSLTSLYLYSNRLE  161 (167)
Q Consensus       147 l~~L~~L~L~~N~ls  161 (167)
                      +++|+.+++++|+++
T Consensus       161 l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIV  175 (414)
T ss_pred             chhhhcccCCcchhh
Confidence            788888888888776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.50  E-value=2.7e-05  Score=62.79  Aligned_cols=80  Identities=34%  Similarity=0.375  Sum_probs=64.2

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      +++.+++++|.+..+.      ..+..++.|+.|++++|.+. .+|..    .+.++.|+.|++++|+++ .+|.....+
T Consensus       141 nL~~L~l~~N~i~~l~------~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~~~~L~~L~ls~N~i~-~l~~~~~~~  208 (394)
T COG4886         141 NLKELDLSDNKIESLP------SPLRNLPNLKNLDLSFNDLS-DLPKL----LSNLSNLNNLDLSGNKIS-DLPPEIELL  208 (394)
T ss_pred             hcccccccccchhhhh------hhhhccccccccccCCchhh-hhhhh----hhhhhhhhheeccCCccc-cCchhhhhh
Confidence            6888888888887552      23667999999999999998 56654    458889999999999998 778777777


Q ss_pred             CCCCEEECcCCc
Q 043924          148 SSLTSLYLYSNR  159 (167)
Q Consensus       148 ~~L~~L~L~~N~  159 (167)
                      ..|+++.+++|+
T Consensus       209 ~~L~~l~~~~N~  220 (394)
T COG4886         209 SALEELDLSNNS  220 (394)
T ss_pred             hhhhhhhhcCCc
Confidence            778888888884

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00031  Score=51.69  Aligned_cols=82  Identities=26%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh--Hhhh
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL--SSVA  145 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP--~~l~  145 (167)
                      .-..+||++|.+..+.       .|..++.|.+|.+++|+++..-|.-    -..+++|+.|.|.+|.+. .+-  .-+.
T Consensus        43 ~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~-~l~dl~pLa  110 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQ-ELGDLDPLA  110 (233)
T ss_pred             ccceecccccchhhcc-------cCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchh-hhhhcchhc
Confidence            4567888888775543       2566889999999999998554442    234567999999999886 222  2367


Q ss_pred             cCCCCCEEECcCCcce
Q 043924          146 HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       146 ~l~~L~~L~L~~N~ls  161 (167)
                      .+++|++|.+-+|+.+
T Consensus       111 ~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cCCccceeeecCCchh
Confidence            8889999999888765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.37  E-value=9.4e-05  Score=56.02  Aligned_cols=66  Identities=29%  Similarity=0.450  Sum_probs=50.8

Q ss_pred             ccCCCCccEEEcCCC--ceeeecCcccccccCCCCCCCEEeCcCCcCCc--hhhHhhhcCCCCCEEECcCCccee
Q 043924           92 FTPFQQLESLYLEYN--NIAGCVENEGIERLSRLSNLKMLDLSENLFNN--SILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n--~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g--~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +..|++|++|.++.|  .+++.++..    ...+++|++++++.|++.-  .++ .+..+.+|..|++.++..++
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc
Confidence            556889999999999  667666654    5667999999999999973  222 25677888899998886554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.37  E-value=2.4e-05  Score=65.19  Aligned_cols=66  Identities=21%  Similarity=0.343  Sum_probs=38.4

Q ss_pred             cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           93 TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +.+.+|..||.+.|.+. .+|+.    ++.+.+|+.|.+..|++. .+|+++..|+ |..||++.|+++ .||.
T Consensus       163 g~~~tl~~ld~s~nei~-slpsq----l~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  163 GLLPTLAHLDVSKNEIQ-SLPSQ----LGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             ccchhHHHhhhhhhhhh-hchHH----hhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecch
Confidence            33445555555555554 34444    555566666666666655 4555566444 777788888777 5663

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.26  E-value=9e-05  Score=34.78  Aligned_cols=19  Identities=53%  Similarity=0.560  Sum_probs=9.0

Q ss_pred             CCEEeCcCCcCCchhhHhhh
Q 043924          126 LKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus       126 L~~L~ls~N~l~g~iP~~l~  145 (167)
                      |++||+++|+|+ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            444555555554 4444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.98  E-value=0.0012  Score=48.72  Aligned_cols=61  Identities=25%  Similarity=0.343  Sum_probs=50.0

Q ss_pred             CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +.+...+||++|.+. .++.     |..++.|.+|.+++|+++..-|.--.-+++|+.|.|.+|.+.
T Consensus        41 ~d~~d~iDLtdNdl~-~l~~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KLDN-----LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccccceecccccchh-hccc-----CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            456778999999985 3343     788999999999999999666665556788999999999875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.91  E-value=0.00028  Score=57.58  Aligned_cols=82  Identities=32%  Similarity=0.324  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh-Hhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL-SSV  144 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP-~~l  144 (167)
                      ..+++.+++++|.+..+..       +..++.|+.|++++|.++. +..     +..++.|+.+++++|++...-+ . .
T Consensus       117 ~~~L~~L~ls~N~I~~i~~-------l~~l~~L~~L~l~~N~i~~-~~~-----~~~l~~L~~l~l~~n~i~~ie~~~-~  182 (414)
T KOG0531|consen  117 LVNLQVLDLSFNKITKLEG-------LSTLTLLKELNLSGNLISD-ISG-----LESLKSLKLLDLSYNRIVDIENDE-L  182 (414)
T ss_pred             hhcchheeccccccccccc-------hhhccchhhheeccCcchh-ccC-----CccchhhhcccCCcchhhhhhhhh-h
Confidence            3467889999999876643       4567789999999999973 333     6779999999999999985433 2 5


Q ss_pred             hcCCCCCEEECcCCcce
Q 043924          145 AHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       145 ~~l~~L~~L~L~~N~ls  161 (167)
                      ..+.+++.+++.+|.+.
T Consensus       183 ~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  183 SELISLEELDLGGNSIR  199 (414)
T ss_pred             hhccchHHHhccCCchh
Confidence            78888999999999765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.85  E-value=4.1e-05  Score=65.66  Aligned_cols=78  Identities=28%  Similarity=0.292  Sum_probs=54.7

Q ss_pred             EEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHh-hhcCC
Q 043924           70 IQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS-VAHLS  148 (167)
Q Consensus        70 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~-l~~l~  148 (167)
                      ..+++++|.+..+      ...+.-++.++.|+|++|+++.. . .    +..++.|++|||+.|.++ .+|.. ...+ 
T Consensus       167 ~~a~fsyN~L~~m------D~SLqll~ale~LnLshNk~~~v-~-~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-  232 (1096)
T KOG1859|consen  167 ATASFSYNRLVLM------DESLQLLPALESLNLSHNKFTKV-D-N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGC-  232 (1096)
T ss_pred             hhhhcchhhHHhH------HHHHHHHHHhhhhccchhhhhhh-H-H----HHhcccccccccccchhc-cccccchhhh-
Confidence            3455555555322      12344578899999999999743 2 3    788999999999999998 56652 2233 


Q ss_pred             CCCEEECcCCcce
Q 043924          149 SLTSLYLYSNRLE  161 (167)
Q Consensus       149 ~L~~L~L~~N~ls  161 (167)
                      +|+.|.+.+|.++
T Consensus       233 ~L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  233 KLQLLNLRNNALT  245 (1096)
T ss_pred             hheeeeecccHHH
Confidence            3999999999875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.80  E-value=0.00066  Score=60.35  Aligned_cols=66  Identities=26%  Similarity=0.200  Sum_probs=56.9

Q ss_pred             CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCc
Q 043924           89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNR  159 (167)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~  159 (167)
                      |..++.|-+|++|++++..+. .+|..    +.+|+.|.+||+..+.....+|.....|++|++|.+..-.
T Consensus       588 P~~I~~Li~LryL~L~~t~I~-~LP~~----l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  588 PSSIGELVHLRYLDLSDTGIS-HLPSG----LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ChHHhhhhhhhcccccCCCcc-ccchH----HHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            455778999999999999998 78887    9999999999999988776777777889999999986544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=6.5e-05  Score=57.87  Aligned_cols=77  Identities=27%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH-----
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS-----  142 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~-----  142 (167)
                      .+..|.|+-|.++.+..       +..+++|+.|+|..|.|.. +.+-  +-+.++++|+.|.|..|.-.|.-+.     
T Consensus        42 ~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN~I~s-ldEL--~YLknlpsLr~LWL~ENPCc~~ag~nYR~~  111 (388)
T KOG2123|consen   42 LLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKNCIES-LDEL--EYLKNLPSLRTLWLDENPCCGEAGQNYRRK  111 (388)
T ss_pred             cceeEEeeccccccchh-------HHHHHHHHHHHHHhccccc-HHHH--HHHhcCchhhhHhhccCCcccccchhHHHH
Confidence            34455555555443321       3345555555555555532 1110  1144555555555555555544332     


Q ss_pred             hhhcCCCCCEEE
Q 043924          143 SVAHLSSLTSLY  154 (167)
Q Consensus       143 ~l~~l~~L~~L~  154 (167)
                      .+.-|++|+.||
T Consensus       112 VLR~LPnLkKLD  123 (388)
T KOG2123|consen  112 VLRVLPNLKKLD  123 (388)
T ss_pred             HHHHcccchhcc
Confidence            133445555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.69  E-value=0.0014  Score=30.65  Aligned_cols=18  Identities=33%  Similarity=0.420  Sum_probs=16.0

Q ss_pred             CccEEEcCCCceeeecCcc
Q 043924           97 QLESLYLEYNNIAGCVENE  115 (167)
Q Consensus        97 ~L~~L~Ls~n~l~g~ip~~  115 (167)
                      +|++||+++|.++ .+|+.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            4899999999999 89886

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.00037  Score=56.54  Aligned_cols=86  Identities=26%  Similarity=0.207  Sum_probs=49.5

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVA  145 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~  145 (167)
                      .+|+.|||++|-++.+...   ......|++|+.|+++.|.+.-.+....   -..+++|+.|.|++..|+. .+-....
T Consensus       146 ~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             CcceeecchhhhHHhHHHH---HHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            4678888888866543211   1234458888888888888865443320   1245566666666666654 2233334


Q ss_pred             cCCCCCEEECcCC
Q 043924          146 HLSSLTSLYLYSN  158 (167)
Q Consensus       146 ~l~~L~~L~L~~N  158 (167)
                      .+|+|+.|+|.+|
T Consensus       220 ~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  220 TFPSLEVLYLEAN  232 (505)
T ss_pred             hCCcHHHhhhhcc
Confidence            4555555555555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.38  E-value=0.0024  Score=48.51  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=45.6

Q ss_pred             CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCC--cCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN--LFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N--~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +..|+.+++.+..++. +-     .+..|++|+.|.++.|  +.++.++.....+++|+++++++|++.
T Consensus        42 ~~~le~ls~~n~gltt-~~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT-LT-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceee-cc-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            4455666666655552 11     2677889999999999  666666666677799999999999986

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.01  E-value=8.2e-05  Score=55.95  Aligned_cols=84  Identities=18%  Similarity=0.041  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ..+|+.||++.|.+..++      ..|..++.+..||++.|.+. .+|..    ++.+..+..+++..|..+ ..|.+++
T Consensus        41 ~kr~tvld~~s~r~vn~~------~n~s~~t~~~rl~~sknq~~-~~~~d----~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLG------KNFSILTRLVRLDLSKNQIK-FLPKD----AKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             cceeeeehhhhhHHHhhc------cchHHHHHHHHHhccHhhHh-hChhh----HHHHHHHHHHHhhccchh-hCCcccc
Confidence            578999999999876553      34666888999999999986 56776    888888999999999887 7899999


Q ss_pred             cCCCCCEEECcCCcce
Q 043924          146 HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       146 ~l~~L~~L~L~~N~ls  161 (167)
                      +.+.++++++-.|.|+
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            9999999999888765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.94  E-value=0.004  Score=27.18  Aligned_cols=13  Identities=54%  Similarity=0.764  Sum_probs=5.0

Q ss_pred             CCCEEeCcCCcCC
Q 043924          125 NLKMLDLSENLFN  137 (167)
Q Consensus       125 ~L~~L~ls~N~l~  137 (167)
                      +|+.|++++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555544

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.005  Score=50.18  Aligned_cols=63  Identities=22%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHh-----hhcCCCCCEEECcCCcc
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSS-----VAHLSSLTSLYLYSNRL  160 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~-----l~~l~~L~~L~L~~N~l  160 (167)
                      +..|+.|||++|.+-. .+..  +-.+.++.|+.|+++.+.+.. .+|+.     ...+++|++|++..|++
T Consensus       245 ~~~L~~LdLs~N~li~-~~~~--~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLID-FDQG--YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhHHhhccccCCcccc-cccc--cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            5566666666666542 2210  114556666666666665553 12332     23455666666666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.60  E-value=0.0079  Score=52.36  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch--hhHh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS--ILSS  143 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~--iP~~  143 (167)
                      -.++..||+++.+++.+.       .++.|++|+.|.+.+=.+...   .....+-+|++|++||+|..+....  +...
T Consensus       172 FpNL~sLDIS~TnI~nl~-------GIS~LknLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~q  241 (699)
T KOG3665|consen  172 FPNLRSLDISGTNISNLS-------GISRLKNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQ  241 (699)
T ss_pred             cCccceeecCCCCccCcH-------HHhccccHHHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHH
Confidence            345666677666665442       245566666666655444310   0011267789999999998766532  2332


Q ss_pred             ----hhcCCCCCEEECcCCcceec
Q 043924          144 ----VAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       144 ----l~~l~~L~~L~L~~N~lsG~  163 (167)
                          -..||+|+.||.++..+.+.
T Consensus       242 Ylec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  242 YLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHHhcccCccccEEecCCcchhHH
Confidence                23588999999998877643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.44  E-value=0.012  Score=28.44  Aligned_cols=14  Identities=50%  Similarity=0.710  Sum_probs=7.7

Q ss_pred             CCCCEEeCcCCcCC
Q 043924          124 SNLKMLDLSENLFN  137 (167)
Q Consensus       124 ~~L~~L~ls~N~l~  137 (167)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.44  E-value=0.012  Score=28.44  Aligned_cols=14  Identities=50%  Similarity=0.710  Sum_probs=7.7

Q ss_pred             CCCCEEeCcCCcCC
Q 043924          124 SNLKMLDLSENLFN  137 (167)
Q Consensus       124 ~~L~~L~ls~N~l~  137 (167)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.40  E-value=0.0044  Score=49.07  Aligned_cols=70  Identities=23%  Similarity=0.114  Sum_probs=47.8

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc----hhhH---------hhhcCCCCCEEECcCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN----SILS---------SVAHLSSLTSLYLYSN  158 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g----~iP~---------~l~~l~~L~~L~L~~N  158 (167)
                      +...++|+++|||.|.|.-.-++...+-+..++.|++|.|.+|.+.-    .+..         ..+.-++|+++..++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            34466899999999998644444322336778899999999998852    1111         1234567899999988


Q ss_pred             cce
Q 043924          159 RLE  161 (167)
Q Consensus       159 ~ls  161 (167)
                      ++.
T Consensus       168 rle  170 (382)
T KOG1909|consen  168 RLE  170 (382)
T ss_pred             ccc
Confidence            874

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.57  E-value=0.019  Score=27.08  Aligned_cols=20  Identities=40%  Similarity=0.473  Sum_probs=9.6

Q ss_pred             CCCCEEeCcCCcCCchhhHh
Q 043924          124 SNLKMLDLSENLFNNSILSS  143 (167)
Q Consensus       124 ~~L~~L~ls~N~l~g~iP~~  143 (167)
                      ++|++|+|++|+|++.-...
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45566666666655444433

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.27  E-value=0.062  Score=41.76  Aligned_cols=70  Identities=23%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCC----chhhHhh---------hcCCCCCEEECcCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN----NSILSSV---------AHLSSLTSLYLYSN  158 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~----g~iP~~l---------~~l~~L~~L~L~~N  158 (167)
                      +-.+++|+..+||.|.|....|+...+-++.-+.|.+|.+++|.+-    |.|...+         ..-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            4568999999999999987777765555778899999999999874    2343322         23478999999999


Q ss_pred             cce
Q 043924          159 RLE  161 (167)
Q Consensus       159 ~ls  161 (167)
                      +|.
T Consensus       168 Rle  170 (388)
T COG5238         168 RLE  170 (388)
T ss_pred             hhc
Confidence            875

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.17  E-value=0.054  Score=25.99  Aligned_cols=14  Identities=29%  Similarity=0.418  Sum_probs=7.1

Q ss_pred             CCccEEEcCCCcee
Q 043924           96 QQLESLYLEYNNIA  109 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~  109 (167)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.17  E-value=0.054  Score=25.99  Aligned_cols=14  Identities=29%  Similarity=0.418  Sum_probs=7.1

Q ss_pred             CCccEEEcCCCcee
Q 043924           96 QQLESLYLEYNNIA  109 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~  109 (167)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.16  E-value=0.034  Score=48.52  Aligned_cols=64  Identities=27%  Similarity=0.366  Sum_probs=48.0

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ..++++|..||+|+.+++..  ..    +++|++|++|.+.+=.|.. ..=..+.+|++|++||+|.....
T Consensus       169 c~sFpNL~sLDIS~TnI~nl--~G----IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL--SG----ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             hhccCccceeecCCCCccCc--HH----HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            45688999999999888732  22    8899999998887766653 22245778999999999987643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=0.017  Score=45.32  Aligned_cols=65  Identities=28%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             CCCCccEEEcCCCceee--ecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924           94 PFQQLESLYLEYNNIAG--CVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g--~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      ..+.++.+||.+|.++.  .|-.-    +.+|+.|++|+++.|.++..|-..-..+.+|++|-|.+..++.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~i----le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w  135 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAI----LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW  135 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHH----HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence            36789999999999973  12222    6789999999999999986654322466789999888776653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=93.48  E-value=0.055  Score=43.05  Aligned_cols=70  Identities=24%  Similarity=0.257  Sum_probs=35.1

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----hhHhh-hcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----ILSSV-AHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l-~~l~~L~~L~L~~N~ls  161 (167)
                      +..+++|+.|||..|.|+-.-.......+..+++|+.|+++...++..    +-..+ ...++|++|.+.+|.++
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            344566666666666664211000001145555666666666666431    12222 23466677777666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.02  E-value=0.0056  Score=47.48  Aligned_cols=85  Identities=28%  Similarity=0.301  Sum_probs=67.6

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh--Hhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL--SSV  144 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP--~~l  144 (167)
                      ..|..|++-+.++.++.       ....++.|+.|.||-|+++.--|      +..+++|+.|+|..|.|.. +-  ..+
T Consensus        19 ~~vkKLNcwg~~L~DIs-------ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~s-ldEL~YL   84 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS-------ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIES-LDELEYL   84 (388)
T ss_pred             HHhhhhcccCCCccHHH-------HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhccccc-HHHHHHH
Confidence            35667777777776553       34578999999999999985443      7899999999999999984 33  346


Q ss_pred             hcCCCCCEEECcCCcceecCC
Q 043924          145 AHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       145 ~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .++++|+.|.|..|.-.|+-+
T Consensus        85 knlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             hcCchhhhHhhccCCcccccc
Confidence            899999999999999887654

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.88  E-value=0.38  Score=39.53  Aligned_cols=31  Identities=26%  Similarity=0.200  Sum_probs=15.2

Q ss_pred             CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924          125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus       125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N  158 (167)
                      +|++|+++++... .+|..+.  .+|++|+++.|
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            4555665555433 2232222  35666666554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.72  E-value=0.12  Score=25.08  Aligned_cols=12  Identities=42%  Similarity=0.584  Sum_probs=5.9

Q ss_pred             CCEEeCcCCcCC
Q 043924          126 LKMLDLSENLFN  137 (167)
Q Consensus       126 L~~L~ls~N~l~  137 (167)
                      |+.|++++|+++
T Consensus         4 L~~L~vs~N~Lt   15 (26)
T smart00364        4 LKELNVSNNQLT   15 (26)
T ss_pred             cceeecCCCccc
Confidence            444555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.10  E-value=0.2  Score=39.05  Aligned_cols=93  Identities=19%  Similarity=0.231  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee----cCccc---ccccCCCCCCCEEeCcCCcCCc
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC----VENEG---IERLSRLSNLKMLDLSENLFNN  138 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~----ip~~~---~~~~~~l~~L~~L~ls~N~l~g  138 (167)
                      ...++.++|++|-+..-..-.+ ...+.+-.+|+..+++.-. +|.    ++...   ...+-.+++|+..+||.|-|..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            4568999999997742100000 0123445667777666532 232    22210   1125678999999999999987


Q ss_pred             hhhHh----hhcCCCCCEEECcCCcc
Q 043924          139 SILSS----VAHLSSLTSLYLYSNRL  160 (167)
Q Consensus       139 ~iP~~----l~~l~~L~~L~L~~N~l  160 (167)
                      ..|+.    +.+-+.|.+|.|++|-+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCC
Confidence            77764    45678899999999965

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.20  E-value=0.28  Score=23.80  Aligned_cols=14  Identities=50%  Similarity=0.681  Sum_probs=9.6

Q ss_pred             CCCCEEeCcCCcCC
Q 043924          124 SNLKMLDLSENLFN  137 (167)
Q Consensus       124 ~~L~~L~ls~N~l~  137 (167)
                      ++|+.|+++.|+++
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            56677777777764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.19  E-value=1.2  Score=29.61  Aligned_cols=61  Identities=25%  Similarity=0.361  Sum_probs=27.4

Q ss_pred             ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcC
Q 043924           90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS  157 (167)
Q Consensus        90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~  157 (167)
                      ..|..+..++.+.+.+ .+. .++..   .|..+++|+.+++..+ ++-.-...|.++ +|+.+.+..
T Consensus        52 ~~F~~~~~l~~i~~~~-~~~-~i~~~---~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   52 NAFSNCKSLESITFPN-NLK-SIGDN---AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTTT-TT-EEEEETS-TT--EE-TT---TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             eeeecccccccccccc-ccc-ccccc---cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            3455565677777754 222 12322   1566777777777654 442333345565 677766654

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.57  E-value=0.92  Score=37.34  Aligned_cols=15  Identities=13%  Similarity=-0.188  Sum_probs=8.6

Q ss_pred             CEEEEEcCCCCCCCc
Q 043924           68 RVIQLDLSFIGNWDL   82 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l   82 (167)
                      ..+.|+++++.+..+
T Consensus        53 ~l~~L~Is~c~L~sL   67 (426)
T PRK15386         53 ASGRLYIKDCDIESL   67 (426)
T ss_pred             CCCEEEeCCCCCccc
Confidence            345666666655543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.59  E-value=0.58  Score=22.91  Aligned_cols=14  Identities=43%  Similarity=0.489  Sum_probs=8.8

Q ss_pred             CCCCEEECcCCcce
Q 043924          148 SSLTSLYLYSNRLE  161 (167)
Q Consensus       148 ~~L~~L~L~~N~ls  161 (167)
                      ++|++|+|++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35666777766664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=83.63  E-value=0.043  Score=43.10  Aligned_cols=61  Identities=26%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcC-CcCCc-hhhHhhhcCCCCCEEECcCC
Q 043924           94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSE-NLFNN-SILSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~-N~l~g-~iP~~l~~l~~L~~L~L~~N  158 (167)
                      .+++|+.|.+.++.+..+|-..    +..=.+|+.|+++. +.|+. ...-.+.+++.|..|+|+-.
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~----iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc  270 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNT----IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC  270 (419)
T ss_pred             HHHhhhhccccccccCcHHHHH----HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence            3445555555555555544444    44445555555543 23332 11122344555555554433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=83.09  E-value=3.2  Score=27.43  Aligned_cols=79  Identities=11%  Similarity=0.190  Sum_probs=46.4

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      .++.+.+.. .+..++     ...|..+++|+.+.+.++ +. .++..   .|.+++.++.+.+.. .+...-...|..+
T Consensus        13 ~l~~i~~~~-~~~~I~-----~~~F~~~~~l~~i~~~~~-~~-~i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen   13 NLESITFPN-TIKKIG-----ENAFSNCTSLKSINFPNN-LT-SIGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             T--EEEETS-T--EE------TTTTTT-TT-SEEEESST-TS-CE-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CCCEEEECC-CeeEeC-----hhhccccccccccccccc-cc-cccee---eeecccccccccccc-ccccccccccccc
Confidence            577777764 344333     456788889999999875 44 34443   278888899999975 4442334467789


Q ss_pred             CCCCEEECcCC
Q 043924          148 SSLTSLYLYSN  158 (167)
Q Consensus       148 ~~L~~L~L~~N  158 (167)
                      ++|+.+++..|
T Consensus        81 ~~l~~i~~~~~   91 (129)
T PF13306_consen   81 TNLKNIDIPSN   91 (129)
T ss_dssp             TTECEEEETTT
T ss_pred             ccccccccCcc
Confidence            99999998765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=80.27  E-value=0.24  Score=39.06  Aligned_cols=59  Identities=29%  Similarity=0.310  Sum_probs=47.3

Q ss_pred             CCccEEEcCCCceeee-cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924           96 QQLESLYLEYNNIAGC-VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~-ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N  158 (167)
                      +.|++|||++..++-. +-.-    ++.+.+|+.|.+.++++...|-..+++=.+|+.|+|+..
T Consensus       185 sRlq~lDLS~s~it~stl~~i----Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGI----LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHH----HHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            3589999999888632 1122    677889999999999999999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 19  GCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIG 78
             L +E   L+  K    D  N L  W  +    + C ++ V C +   +V  +DLS   
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSSN---KNPCTFDGVTCRD--DKVTSIDLSSKP 61

Query: 79  NWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN 138
             ++    +++SL      LESL+L  ++I G      +      ++L  LDLS N  + 
Sbjct: 62  L-NVGFSAVSSSLL-SLTGLESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSG 114

Query: 139 SI--LSSVAHLSSLTSLYLYSNRLEGNI 164
            +  L+S+   S L  L + SN L+   
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 8e-11
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              LE L +  NN +      GI  L   S L+ LD+S N  +     +++  + L  L 
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 155 LYSNRLEGNI 164
           + SN+  G I
Sbjct: 254 ISSNQFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 94  PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSL 153
           P + L+ L L  N   G + +           L  LDLS N F  ++       S L SL
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDF---LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 154 YLYSNRLEGNI 164
            L SN   G +
Sbjct: 324 ALSSNNFSGEL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 89  ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSI-LSSVAHL 147
             L      L  L L  N+  G V           S L+ L LS N F+  + + ++  +
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 148 SSLTSLYLYSNRLEGNI 164
             L  L L  N   G +
Sbjct: 343 RGLKVLDLSFNEFSGEL 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 5e-10
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 97  QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLY 156
           +L SL+L +N ++G + +     L  LS L+ L L  N+    I   + ++ +L +L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 157 SNRLEGNI 164
            N L G I
Sbjct: 475 FNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
              S       LE L L  N+I+G               LK L +S N  +  +   V+ 
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVG-WVLSDGCGELKHLAISGNKISGDV--DVSR 198

Query: 147 LSSLTSLYLYSNRLEGNI 164
             +L  L + SN     I
Sbjct: 199 CVNLEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              L+ L +  N ++G         +S  + LK+L++S N F   I      L SL  L 
Sbjct: 222 CSALQHLDISGNKLSGDFSRA----ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275

Query: 155 LYSNRLEGNI 164
           L  N+  G I
Sbjct: 276 LAENKFTGEI 285

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS-SLTSLY 154
             LESL L  NN +G +  +    L ++  LK+LDLS N F+  +  S+ +LS SL +L 
Sbjct: 318 SLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 155 LYSNRLEGNI 164
           L SN   G I
Sbjct: 375 LSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 89  ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS 148
            SL      L +L L  NN +G +     +  +  + L+ L L  N F   I  ++++ S
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 149 SLTSLYLYSNRLEGNI 164
            L SL+L  N L G I
Sbjct: 419 ELVSLHLSFNYLSGTI 434

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
             L  + L  N + G +       + RL NL +L LS N F+ +I + +    SL  L L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 156 YSNRLEGNI 164
            +N   G I
Sbjct: 546 NTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 97  QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH-LSSLTSLYL 155
           +L+ L +  N   G +          L +L+ L L+EN F   I   ++    +LT L L
Sbjct: 248 ELKLLNISSNQFVGPIPP------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 156 YSNRLEGNI 164
             N   G +
Sbjct: 302 SGNHFYGAV 310

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
           + LE+L L++N++ G + +     LS  +NL  + LS N     I   +  L +L  L L
Sbjct: 466 KTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 156 YSNRLEGNI 164
            +N   GNI
Sbjct: 522 SNNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
             +L  L L  N + G +  E    L  +  L+ L L  N     I S +++ ++L  + 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQE----LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 155 LYSNRLEGNI 164
           L +NRL G I
Sbjct: 497 LSNNRLTGEI 506

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
                   +      G              ++  LD+S N+ +  I   +  +  L  L 
Sbjct: 607 LSTRNPCNITSRVYGGHTSPT----FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 155 LYSNRLEGNI 164
           L  N + G+I
Sbjct: 663 LGHNDISGSI 672

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 96  QQLESLYLEYNNIAGCVENEGI-ERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
             L  L L +N+I+G      I + +  L  L +LDLS N  +  I  +++ L+ LT + 
Sbjct: 656 PYLFILNLGHNDISG-----SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 155 LYSNRLEGNI 164
           L +N L G I
Sbjct: 711 LSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              +  L + YN ++G +  E    +  +  L +L+L  N  + SI   V  L  L  L 
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 155 LYSNRLEGNI 164
           L SN+L+G I
Sbjct: 687 LSSNKLDGRI 696

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 118 ERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164
           E+L+RLS     +++  ++      +  +  S+  L +  N L G I
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.3 bits (199), Expect = 9e-19
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 34/173 (19%)

Query: 18  EGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQ--WERVECSNTT--GRVIQLD 73
           E C  Q++ ALL++K    +P  +L  W+     TDCC   W  V C   T   RV  LD
Sbjct: 1   ELCNPQDKQALLQIKKDLGNP-TTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 74  LS------------FIGNWD-LKERYL-NASLFT---P-----FQQLESLYLEYNNIAGC 111
           LS             + N   L   Y+   +      P       QL  LY+ + N++G 
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 112 VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164
           + +     LS++  L  LD S N  + ++  S++ L +L  +    NR+ G I
Sbjct: 117 IPDF----LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
           +  + ++L  N++A       + ++    NL  LDL  N    ++   +  L  L SL +
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 156 YSNRLEGNI 164
             N L G I
Sbjct: 276 SFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
             S+ +  N + G +        + L NL  +DLS N+             +   ++L  
Sbjct: 176 FTSMTISRNRLTGKIPPT----FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 158 NRLEGNI 164
           N L  ++
Sbjct: 231 NSLAFDL 237

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNL-KMLDLSENLFNNSILSSVAHLSSLTSLY 154
             L  +  + N I+G + +         S L   + +S N     I  + A+L +L  + 
Sbjct: 149 PNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 155 LYSNRLEGNI 164
           L  N LEG+ 
Sbjct: 204 LSRNMLEGDA 213

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 97  QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLY 156
            LE L +   ++     ++ I  LS L++L +LD+S +  ++SIL+ +  L  + S+ L 
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 157 SNRLEGNID 165
            N    +I 
Sbjct: 145 YNGAITDIM 153

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              ++ L +   +            +S LSNL+ L +      +  + +++ L+SLT L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 155 LYSNRLEGNI 164
           +  +  + +I
Sbjct: 119 ISHSAHDDSI 128

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
            +    L  L + ++      ++  + +++ L  +  +DLS N     I   +  L  L 
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 152 SLYLYSNRL 160
           SL +  + +
Sbjct: 163 SLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 97  QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLY 156
           ++ S+ L YN          I  L  L  LK L++  +  ++     +     L  LY +
Sbjct: 137 KVNSIDLSYNG-----AITDIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189

Query: 157 SNRL 160
           S  +
Sbjct: 190 SQTI 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L+   F     L  L+L  N+I     N       +  NL  LDLS N  +++ L +   
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 147 LSSLTSLYLYSNRLEG 162
           L +L  L L +N+++ 
Sbjct: 144 LENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNI----AGCVENEGIERLSRLSNLKMLDLSENLFNNSI 140
             +N  +    ++LE L L++NN+            I  L  LS+L +L+L  N F+   
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 141 LSSVAHLSSLTSLYLYSNRLEG 162
           +     L  L  + L  N L  
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L   L      L+ L L++N ++   +       +  +NL  L L  N       +    
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 147 LSSLTSLYLYSNRLEGNID 165
             +L +L L  N L     
Sbjct: 120 QKNLITLDLSHNGLSSTKL 138

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 15/81 (18%), Positives = 31/81 (38%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             + +++FT    L+ L L  +  +              S L +L+L++N  +     + 
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 145 AHLSSLTSLYLYSNRLEGNID 165
           + L  L  L L  N +   + 
Sbjct: 402 SWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L A+ FT + QL SL + +N I+            +L  LK+L+L  N  +     + A 
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 147 LSSLTSLYLYSNRLEG 162
            ++LT L+L SN ++ 
Sbjct: 96  CTNLTELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L  + F     L+ L L    +     +        L NL +LDLS N   N     +  
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 147 LSSLTSLYLYSNRLE 161
           L  L  L L  N L 
Sbjct: 503 LEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
                    + L+ L L  N I   +++E ++  +  S+LK L+LS N            
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFA-NSSLKKLELSSNQIKEFSPGCFHA 193

Query: 147 LSSLTSLYLYSNRLEGNI 164
           +  L  L+L + +L  ++
Sbjct: 194 IGRLFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           + +  F+    LE L L  N I   +  +       L N+  + LS N +     +S A 
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQE---WRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 147 LSSLTSLYLYSNRLEG 162
           + SL  L L    L+ 
Sbjct: 453 VPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 20/83 (24%), Positives = 24/83 (28%), Gaps = 4/83 (4%)

Query: 80  WDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS 139
           W                 L  L LE N                L  LK++DL  N  N  
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV----FKDLFELKIIDLGLNNLNTL 575

Query: 140 ILSSVAHLSSLTSLYLYSNRLEG 162
             S   +  SL SL L  N +  
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             +   +F    +L+ + L  NN+     +      +   +LK L+L +NL  +      
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASV----FNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 145 AH-LSSLTSLYLYSNRLEGNID 165
                +LT L +  N  +   +
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN--NSILSSV 144
           L    +   + +  +YL YN       N      + + +L+ L L        +S  S  
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNS----FALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 145 AHLSSLTSLYLYSNRLEGNID 165
             L +LT L L +N +    D
Sbjct: 477 QPLRNLTILDLSNNNIANIND 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS------NLKMLDLSENLFNNSI 140
           +    F    QLE  +LEYNNI   + +  +  L  +       +     +S        
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 141 LSSVAHLSSLTSLYLYSNRLEGNID 165
             S   L  L  L +  N + G   
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKS 346

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 72  LDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131
           L L       LK    + S F P + L  L L  NNIA   ++     L  L  L++LDL
Sbjct: 459 LMLR--RVA-LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM----LEGLEKLEILDL 511

Query: 132 SEN--------LFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164
             N              +  +  LS L  L L SN  +   
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERL-----SRLSNLKMLDLSENLFNNSIL 141
           L +        +  L L+ +     +    + ++       L  L+ L++ +N       
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 142 SSVAHLSSLTSLYLYSNRLEGN 163
           +    L +L  L L ++     
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 97  QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLY 156
            + +L L  + ++    +       + +NL MLDLS N  N     S A L  L   +L 
Sbjct: 223 SIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 157 SNRLEG 162
            N ++ 
Sbjct: 281 YNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 94  PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSL 153
            +  L  L L YNN+     +      + L  L+   L  N   +    S+  L ++  L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDS----FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 154 YLYSNRLEGNI 164
            L  +  + +I
Sbjct: 302 NLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              +  L L +N +            +R S L  LD+  N  +         L  L  L 
Sbjct: 24  PTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 155 LYSNRLEG 162
           L  N L  
Sbjct: 80  LQHNELSQ 87

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           +  +   F    +L  L+L    +   +  E +      ++++ L LS +  + +  ++ 
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLT-EKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 145 AHL--SSLTSLYLYSNRLEGNID 165
             L  ++LT L L  N L    +
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGN 265

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 86  YLNASLFTPFQ--QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS 143
            L +     F    L+ L L  N I              +  L  L L+      S+   
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGC----FHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 144 VA---HLSSLTSLYLYSNRLEGNID 165
           +      +S+ +L L +++L    +
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           R+L +  F  F +L+ L L    I    +         LS+L  L L+ N   +  L + 
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAF 96

Query: 145 AHLSSLTSLYLYSNRLEGNID 165
           + LSSL  L      L    +
Sbjct: 97  SGLSSLQKLVAVETNLASLEN 117

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
           F   +QLE L  +++N+    E         L NL  LD+S      +       LSSL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 152 SLYLYSNRLEGNI 164
            L +  N  + N 
Sbjct: 449 VLKMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           R     +F     LE L +  N+       +     + L NL  LDLS+        ++ 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 145 AHLSSLTSLYLYSNRLEGNI 164
             LSSL  L +  N      
Sbjct: 491 NSLSSLQVLNMSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
               +FT  + L  L L    +            + LS+L++L++S N F +        
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 147 LSSLTSLYLYSNRLEGNI 164
           L+SL  L    N +  + 
Sbjct: 517 LNSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L+ + F     L+ L + +NN               L++L++LD S N    S    +
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 145 AHL-SSLTSLYLYSNRLEGNID 165
            H  SSL  L L  N      +
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
            ++L L +N +                 L++LDLS          +   LS L++L L  
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 158 NRLEGNID 165
           N ++    
Sbjct: 86  NPIQSLAL 93

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 72  LDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131
           LDLS  G   L  +   +        L+ L L +N +              L  L+ LD 
Sbjct: 352 LDLSRNG---LSFKGCCSQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDF 403

Query: 132 SENLFNNSILSSV-AHLSSLTSLYLYSNRLEGNID 165
             +        SV   L +L  L +         +
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 88  NASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147
           NA        LE L L  N ++   +    +     ++LK LDLS N    ++ S+   L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 148 SSLTSLYLYSNRLEGNID 165
             L  L    + L+   +
Sbjct: 396 EQLEHLDFQHSNLKQMSE 413

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L        + L+ L + +N I      E     S L+NL+ LDLS N   +   + +  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 147 LSSLT----SLYLYSNRLEGNID 165
           L  +     SL L  N +     
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKM-LDLSENLFNNSILSSVAHLS 148
             F+    LE L L  N I   +    +  L ++  L + LDLS N  N     +   + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 149 SLTSLYLYSNRLEGNI 164
            L  L L +N    N+
Sbjct: 202 -LHKLTLRNNFDSLNV 216

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 6/76 (7%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149
            LF     + S  L    I      E ++  S     + L+L    F       +  L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 150 LTSLYLYSNRLEGNID 165
           LT            +D
Sbjct: 330 LTFTSNKGGNAFSEVD 345

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 74  LSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAG--CVENEGIERLSRLSNLKMLDL 131
              +      E  L     +  + L +L +E   +A      ++ I+  + L+N+    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 132 SENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162
                    +   ++      L L + +   
Sbjct: 290 VSVTIER--VKDFSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 11/42 (26%), Positives = 15/42 (35%)

Query: 124 SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165
            + K LDLS N   +    S      L  L L    ++   D
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                +L+ L +  N I        I  L+ LS L  L L+ N   N  +  +  L++LT
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 152 SLYLYSNRLEG 162
           +L+L  N +  
Sbjct: 315 TLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 6e-08
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                QL  L +  N I        I  +  L+ LKML++  N  ++  +S + +LS L 
Sbjct: 239 LANLSQLTWLEIGTNQI------SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 152 SLYLYSNRLEGNI 164
           SL+L +N+L    
Sbjct: 291 SLFLNNNQLGNED 303

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 L  LYL  +NI        I  L+ L+ +  L+L  N  N S LS +++++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLN 158

Query: 152 SLYLYSNRLEG 162
            L +  ++++ 
Sbjct: 159 YLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              LE L L  N I        I  LS L  L  L +  N    + +S++ +L++L  LY
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 155 LYSNRLEG 162
           L  + +  
Sbjct: 117 LNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 L SL L YN I      E I  L+ L++L       N    + ++ VA+++ L 
Sbjct: 173 IANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVN--QITDITPVANMTRLN 224

Query: 152 SLYLYSNRLEG 162
           SL + +N++  
Sbjct: 225 SLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
            +   +L +LY+  N I        I  L  L+NL+ L L+E+  ++  +S +A+L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKI------TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 152 SLYLYSNRLEGNID 165
           SL L +N    ++ 
Sbjct: 136 SLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                QL SL+L  N +     NE +E +  L+NL  L LS+N   +  +  +A LS + 
Sbjct: 283 LNNLSQLNSLFLNNNQL----GNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMD 336

Query: 152 SLYLYSNRLE 161
           S    +  ++
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 L       N I        I  ++ ++ L  L +  N   +  LS +A+LS LT
Sbjct: 195 LASLTSLHYFTAYVNQI------TDITPVANMTRLNSLKIGNNKITD--LSPLANLSQLT 246

Query: 152 SLYLYSNRLEG 162
            L + +N++  
Sbjct: 247 WLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                ++ SL L  N+         +  LS ++ L  L ++E+      ++ +A+L+ L 
Sbjct: 128 LANLTKMYSLNLGANHNLS-----DLSPLSNMTGLNYLTVTES--KVKDVTPIANLTDLY 180

Query: 152 SLYLYSNRLEG 162
           SL L  N++E 
Sbjct: 181 SLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
               + +  L +    +        I+ +  L+NL+ L+L+ N   +  +S +++L  LT
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 152 SLYLYSNRLE 161
           +LY+ +N++ 
Sbjct: 92  NLYIGTNKIT 101

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
             +     L+  ++        +     L ++  L ++     +  +  + +L++L  L 
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 155 LYSNRLEG 162
           L  N++  
Sbjct: 73  LNGNQITD 80

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 8/64 (12%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
             +L      I        I   + L+      L +    +  + +   L S+T L +  
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 158 NRLE 161
            ++ 
Sbjct: 54  EKVA 57

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
              +  LF     L+ L L+ N+       +    L  L  L++L LS    ++    + 
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 145 AHLSSLTSLYLYSNRLEG 162
             L  +  + L  NRL  
Sbjct: 497 TSLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 4/78 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
            ++  +  +  + L+ L+     I+          L     L+ L L  N  ++  L   
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKLPKG 149

Query: 145 AHLSSLTSLYLYSNRLEG 162
                L  L   +N +  
Sbjct: 150 FPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           ++++ F  F  L+ L L   ++     +E    L  LS LK L LS N F N    S ++
Sbjct: 269 ISSNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 147 LSSLTSLYLYSNRLEGNI 164
             SLT L +  N     +
Sbjct: 324 FPSLTHLSIKGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 71  QLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLD 130
            L+LS   N   +   L    F    QLE L L +  +    + +       L  LK+L+
Sbjct: 380 SLNLS--YN---EPLSLKTEAFKECPQLELLDLAFTRLKVK-DAQSP--FQNLHLLKVLN 431

Query: 131 LSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164
           LS +L + S       L +L  L L  N      
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L        + L  L L +++I           L  LS+L+ L+LS N   +    +   
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 147 LSSLTSLYLYSNRLEGNID 165
              L  L L   RL+    
Sbjct: 399 CPQLELLDLAFTRLKVKDA 417

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L     + F  L  L ++ N     +       L  L NL+ LDLS +    S   ++
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNL 370

Query: 145 A--HLSSLTSLYLYSNRLEG 162
              +LS L SL L  N    
Sbjct: 371 QLRNLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
            +++   F    +L++L L  N +    E      LS    LK L   +   ++     +
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPL 125

Query: 145 AHLSSLTSLYLYSNRLEGNID 165
            +  +L SLYL SN +     
Sbjct: 126 HNQKTLESLYLGSNHISSIKL 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             ++   FT  + +  + L +N +           LS L  +  L+L+ N  +  + S +
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA----LSHLKGI-YLNLASNHISIILPSLL 543

Query: 145 AHLSSLTSLYLYSNRLEGNID 165
             LS   ++ L  N L+    
Sbjct: 544 PILSQQRTINLRQNPLDCTCS 564

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 72  LDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131
           LDLS   + D++              L+SL L YN     ++ E          L++LDL
Sbjct: 355 LDLS--HD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEA---FKECPQLELLDL 407

Query: 132 SENLFNNSILSSV-AHLSSLTSLYLYSNRLEGNID 165
           +          S   +L  L  L L  + L+ + +
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
            E L   +N +            SRL NL  LDL+          +      L +L L +
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 158 NRLEG 162
           N L  
Sbjct: 91  NPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           ++       + LESLYL  N+I+     +          LK+LD   N  +      ++ 
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPK----GFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 147 LSSLTSLYLYSNR 159
           L   T+L L  N 
Sbjct: 176 LQQATNLSLNLNG 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
                 +  Q L     E  +      +  +       +++ ++L ++ F N   ++   
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 147 LSSLTSLYLYSNRLE 161
            S L  L L +  L 
Sbjct: 277 FSGLQELDLTATHLS 291

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 72  LDLS---FIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKM 128
           ++++    I    LK+ +   +     ++++ +Y+ YNN+        +    ++  L M
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL---QKMKKLGM 334

Query: 129 LDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162
           L+   N      L +      L SL L  N++  
Sbjct: 335 LECLYNQL-EGKLPAFGSEIKLASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 96  QQLESLYLEYNNIAGCVEN---EGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTS 152
             + ++   YN I                +  N+  ++LS N  +       +  S L+S
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 153 LYLYSNRLEG 162
           + L  N L  
Sbjct: 462 INLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
           ++L  L   YN + G      +        L  L+L+ N       +       + +L  
Sbjct: 330 KKLGMLECLYNQLEGK-----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 156 YSNRLEG 162
             N+L+ 
Sbjct: 385 AHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 9/75 (12%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  QQLESLYLEYNNIAGCVENEG----IERLSRLSNLKMLDLSENLFNN-SILSSVAHLSSL 150
            +++ + +  N      + +     +        ++++ +  N      + +S+  +  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 151 TSLYLYSNRLEGNID 165
             L    N+LEG + 
Sbjct: 333 GMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 52  TDCCQWER---VECSNTTGRVIQLDLSFIGNWDLKERYLNASL---FTPFQQLESLYLEY 105
            +   W     V  ++  GRV  L L   G         +  +        +LE L L  
Sbjct: 64  KELDMWGAQPGVSLNSN-GRVTGLSLEGFG--------ASGRVPDAIGQLTELEVLALGS 114

Query: 106 NNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA--HLSSLTSLYLYSNRLEGN 163
           +         G + +S   + +        +  + +        S L    + S+  + +
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 164 I 164
           I
Sbjct: 175 I 175

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 89  ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN-------NSIL 141
           A+     +Q+E+L   +N +              +S +  +D S N          + + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDA---KSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 142 SSVAHLSSLTSLYLYSNRLEGNID 165
            +     +++S+ L +N++     
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN-------NSILSSVAHL 147
              + S+ L  N I+   +       S  S L  ++L  N+              +  + 
Sbjct: 432 GINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 148 SSLTSLYLYSNRLEGNID 165
             LTS+ L  N+L    D
Sbjct: 488 YLLTSIDLRFNKLTKLSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 15/82 (18%)

Query: 96  QQLESLYLEYNNIAGCVENEGIE---------------RLSRLSNLKMLDLSENLFNNSI 140
            +L   Y+  +        E  E               +   L +L  +++        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 141 LSSVAHLSSLTSLYLYSNRLEG 162
            + +  L  +  + +  NR   
Sbjct: 266 PTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 4/77 (5%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEG---IERLSRLSNLKMLDLSENLFNNSILS-SVA 145
            LF+    L S+ L  N +    +N      E       L  +DL  N            
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 146 HLSSLTSLYLYSNRLEG 162
            L  L  + L  N    
Sbjct: 511 TLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 8/79 (10%), Positives = 26/79 (32%), Gaps = 12/79 (15%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLF--------NNSILSS 143
           +   + L  + +        +       L  L  +++++++ N          +   L+ 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 144 VAHLSSLTSLYLYSNRLEG 162
                 +  +Y+  N L+ 
Sbjct: 301 APVGEKIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 13/78 (16%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGI-ERLSRLSNLKMLDLSENLF--NNSIL----SSV 144
            T    L  + L YN+            +    S LK   +        N  L      +
Sbjct: 509 ATTLPYLVGIDLSYNSF------SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562

Query: 145 AHLSSLTSLYLYSNRLEG 162
               SLT L + SN +  
Sbjct: 563 TLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 2/92 (2%)

Query: 74  LSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS-NLKMLDLS 132
                       +   +      + +   L  + I    + + I++ SR++     +   
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 133 ENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164
            N     +  +V  L+ L   Y+ ++      
Sbjct: 192 SNNIT-FVSKAVMRLTKLRQFYMGNSPFVAEN 222

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
             L  L +  N+I        +       N+ +LD+ +N   +  LS V          L
Sbjct: 566 PSLTQLQIGSNDI------RKVNE-KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

Query: 156 YSNRLE 161
           + ++ +
Sbjct: 619 FYDKTQ 624

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 8/67 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
             QLESLYL  N I        I  LSRL+ L  L L +N  ++  +  +A L+ L +LY
Sbjct: 130 LPQLESLYLGNNKI------TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLY 181

Query: 155 LYSNRLE 161
           L  N + 
Sbjct: 182 LSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 +  L+L  N +        I+ L+ L NL  L L EN      LSS+  L  L 
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDEN--KIKDLSSLKDLKKLK 112

Query: 152 SLYLYSNRLE 161
           SL L  N + 
Sbjct: 113 SLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
            T  + L  L+L+ N I      + +  L  L  LK L L  N  ++  ++ + HL  L 
Sbjct: 83  LTNLKNLGWLFLDENKI------KDLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLE 134

Query: 152 SLYLYSNRLE 161
           SLYL +N++ 
Sbjct: 135 SLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 9/67 (13%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
           F +     L+  ++            + L+++  +  + +   +  +  + +L ++T L+
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 155 LYSNRLE 161
           L  N+L 
Sbjct: 72  LNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149
                  +L++LYL  N+I        +  L+ L NL +L+L      N  ++  ++L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 150 LTSLYLYSNRL 160
             ++      L
Sbjct: 223 PNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 5/64 (7%), Positives = 19/64 (29%), Gaps = 8/64 (12%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
           +         I      + I      +     +L +    +    +   L+S+  +   +
Sbjct: 1   MGETITVSTPI------KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 158 NRLE 161
           + ++
Sbjct: 53  SDIK 56

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              L  +    N +        I  L  L+ L  + ++ N   +  ++ +A+L++LT L 
Sbjct: 67  LNNLTQINFSNNQL------TDITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 155 LYSNRLEG 162
           L++N++  
Sbjct: 119 LFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
            T   Q+ +L  +   I      + I+ +  L+NL  ++ S N   +  ++ + +L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 152 SLYLYSNRLEG 162
            + + +N++  
Sbjct: 94  DILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 LE L +  N +        I  L++L+NL+ L  + N  ++  ++ +  L++L 
Sbjct: 173 LANLTTLERLDISSNKV------SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 224

Query: 152 SLYLYSNRLEG 162
            L L  N+L+ 
Sbjct: 225 ELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 LESL    N I        I  L  L+NL  L L+ N   +  + ++A L++LT
Sbjct: 195 LAKLTNLESLIATNNQI------SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 152 SLYLYSNRLEGNIDVK 167
            L L +N++     + 
Sbjct: 247 DLDLANNQISNLAPLS 262

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 L  L L  N I        +  LS L+ L  L L  N  +N  +S +A L++LT
Sbjct: 239 LASLTNLTDLDLANNQI------SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 290

Query: 152 SLYLYSNRLEG 162
           +L L  N+LE 
Sbjct: 291 NLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
            +  + L  L L +NNI        I  +S L+ L+ L    N  ++  +SS+A+L+++ 
Sbjct: 305 ISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 152 SLYLYSNRLEG 162
            L    N++  
Sbjct: 357 WLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
             L +L L  N +      E I  +S L NL  L L  N  ++  +S V+ L+ L  L+ 
Sbjct: 287 TALTNLELNENQL------EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFF 338

Query: 156 YSNRLEG 162
           Y+N++  
Sbjct: 339 YNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 L  L L  N I        I+ L  L+NL  L+LS N  ++  +S+++ L+SL 
Sbjct: 108 LANLTNLTGLTLFNNQI------TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQ 159

Query: 152 SLYLYSNRLE 161
            L   +   +
Sbjct: 160 QLSFGNQVTD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
             +     L   N+            + L  +  L        +  +  V +L++LT + 
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 155 LYSNRLEG 162
             +N+L  
Sbjct: 75  FSNNQLTD 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
            +    L+ L    N +        ++ L+ L+ L+ LD+S N    S +S +A L++L 
Sbjct: 152 LSGLTSLQQLSF-GNQV------TDLKPLANLTTLERLDISSN--KVSDISVLAKLTNLE 202

Query: 152 SLYLYSNRLEG 162
           SL   +N++  
Sbjct: 203 SLIATNNQISD 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 88  NASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV-AH 146
             S+F   + L  L + + +             + LS+L++L ++ N F  + L  +   
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 147 LSSLTSLYLYSNRLE 161
           L +LT L L   +LE
Sbjct: 469 LRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
               +F     LE L +  N+       +     + L NL  LDLS+        ++   
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 147 LSSLTSLYLYSNRL 160
           LSSL  L + SN+L
Sbjct: 493 LSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           R+L +  F  F +L+ L L    I   +E+        LS+L  L L+ N   +  L + 
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQT-IEDGA---YQSLSHLSTLILTGNPIQSLALGAF 96

Query: 145 AHLSSLTSLYLYSNRLE 161
           + LSSL  L      L 
Sbjct: 97  SGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149
           S F   +QLE L  +++N+    E         L NL  LD+S      +       LSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 150 LTSLYLYSNRLEGNI 164
           L  L +  N  + N 
Sbjct: 447 LEVLKMAGNSFQENF 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
                 +FT  + L  L L    +      E +     + LS+L++L+++ N   +    
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQL------EQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 143 SVAHLSSLTSLYLYSNRL 160
               L+SL  ++L++N  
Sbjct: 513 IFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           + +    +     L +L L  N I    ++  +   S LS+L+ L   E    +     +
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 145 AHLSSLTSLYLYSNRL 160
            HL +L  L +  N +
Sbjct: 121 GHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 72  LDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131
           LDLS   N  L  +   +        L+ L L +N +     N        L  L+ LD 
Sbjct: 352 LDLS--RN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDF 403

Query: 132 SENLFNNSILSSV-AHLSSLTSLYLYSNRLE 161
             +        SV   L +L  L +      
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
               ++L L +N +                 L++LDLS          +   LS L++L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 155 LYSNRL 160
           L  N +
Sbjct: 83  LTGNPI 88

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV 144
           L +  F+ F +L+ L L    I      E IE      L +L  L L+ N   +    S 
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEI------ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 145 AHLSSLTSLYLYSNRLEG 162
           + L+SL +L     +L  
Sbjct: 101 SGLTSLENLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           +  +   F+    LE+L      +A          + +L  LK L+++ N  ++  L + 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 145 -AHLSSLTSLYLYSNRLEG 162
            ++L++L  + L  N ++ 
Sbjct: 149 FSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             ++  +F    +L+ L + +NN+     +      ++L +L  LD S N    S     
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSH----YNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 145 AHLSSLTSLYLYSNRL 160
               SL    L +N +
Sbjct: 542 HFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149
           + F   ++L+ L  +++ +    E         L  L  LD+S              L+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSA---FLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 150 LTSLYLYSNRLEGNI 164
           L +L +  N  + N 
Sbjct: 450 LNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           +     +F     L +L +  N+      +      +  +NL  LDLS+           
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV---FANTTNLTFLDLSKCQLEQISWGVF 493

Query: 145 AHLSSLTSLYLYSNRLEG 162
             L  L  L +  N L  
Sbjct: 494 DTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
             +++F     L  L L    +              L  L++L++S N       S    
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGV----FDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 147 LSSLTSLYLYSNRLEG 162
           L SL++L    NR+E 
Sbjct: 520 LYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 4/78 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             +    +     L +L L  N I            S L++L+ L   E    +     +
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPIQS-FSPGS---FSGLTSLENLVAVETKLASLESFPI 124

Query: 145 AHLSSLTSLYLYSNRLEG 162
             L +L  L +  N +  
Sbjct: 125 GQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
               +++ L +N +            S  S L+ LDLS          +   L  L++L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 155 LYSNRLEG 162
           L  N ++ 
Sbjct: 87  LTGNPIQS 94

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 14/94 (14%)

Query: 68  RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK 127
            + +  L++       +   +   F     + ++ L   +I      + +E + +    +
Sbjct: 262 TIDEFRLTY-----TNDFSDDIVKFHCLANVSAMSLAGVSI------KYLEDVPKHFKWQ 310

Query: 128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161
            L +               L  L SL L  N+  
Sbjct: 311 SLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGS 341

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L          L+SL L  N            +   L +L  LDLS N  + S   S + 
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKG------SISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 147 L--SSLTSLYLYSNRLE 161
           L  +SL  L L  N   
Sbjct: 373 LGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L +        L+ L + +N I  C         S L+NL  +DLS N      ++ +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAY---FSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 145 AHLSSLT----SLYLYSNRLE 161
             L        SL +  N ++
Sbjct: 174 QFLRENPQVNLSLDMSLNPID 194

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149
                  +++  Y+ YNN+     +  +    ++  L +LD   N      L +      
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASL---QKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 150 LTSLYLYSNRLEG 162
           LT L L  N++E 
Sbjct: 597 LTDLKLDYNQIEE 609

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 96  QQLESLYLEYNNIAGCVENEGIER-LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
             + S+   YN I     N        +  N   + LS N          A  S ++++ 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 155 LYSNRLE 161
           L +N + 
Sbjct: 704 LSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 15/86 (17%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIER---------------LSRLSNLKMLDLSENLF 136
                +L+ +Y   +           E                 S L +L  ++L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 137 NNSILSSVAHLSSLTSLYLYSNRLEG 162
              +   +  L  L SL +  NR   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
            +L  L   +N +        +E       L  L L  N          A    +  L  
Sbjct: 573 VKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 156 YSNRLEG 162
             N+L+ 
Sbjct: 627 SHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 13/78 (16%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGI-ERLSRLSNLKMLDLSENLF--NNSIL----SSV 144
            T    L ++ + YN             +    S LK   +        N IL    + +
Sbjct: 749 ATTLPYLSNMDVSYNCF------SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 145 AHLSSLTSLYLYSNRLEG 162
               SL  L + SN +  
Sbjct: 803 TTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 8/81 (9%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLF-----NNSIL 141
           +         Q+E L   +N +              +  +  +D S N       N S  
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA---KSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 142 SSVAHLSSLTSLYLYSNRLEG 162
                  + +++ L  N ++ 
Sbjct: 667 MDDYKGINASTVTLSYNEIQK 687

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 89  ASLFTPFQQLESLYLEYNNIAGCVENEGIER---LSRLSNLKMLDLSENLFNNSILSSVA 145
             LF     + ++ L  N +    EN    +         L  +DL  N    S+     
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFR 748

Query: 146 H--LSSLTSLYLYSNRLEG 162
              L  L+++ +  N    
Sbjct: 749 ATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
           +     L ++ L +N +    ++      + L  L  +D+S N F+ S  +   + S L 
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRA---TTLPYLSNMDVSYNCFS-SFPTQPLNSSQLK 779

Query: 152 SLYLYSNRLEGN 163
           +  +   R    
Sbjct: 780 AFGIRHQRDAEG 791

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 22/201 (10%), Positives = 46/201 (22%), Gaps = 64/201 (31%)

Query: 23  QERFALLRLKLFFDDPFNSLHHWVDD--------EGATDCCQWERVECS--NTTGRVIQL 72
           ++  AL  +    D      +    +            +   W        +  GRV  L
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328

Query: 73  DLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS----------- 121
            L+         +           +L+ L    ++        G E L+           
Sbjct: 329 SLA-----GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 122 ----------RLSNLKMLDLSENLFNN----------------------------SILSS 143
                         L + DL ++  N                              I  +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 144 VAHLSSLTSLYLYSNRLEGNI 164
           +  L+ L  +Y  ++    + 
Sbjct: 444 IQRLTKLQIIYFANSPFTYDN 464

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
             ASL      ++ L L  N ++     +    L+  + L++L+LS N+        +  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 147 LSSLTSLYLYSNRLE 161
           LS+L +L L +N ++
Sbjct: 79  LSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 88  NASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147
            A L      LE L L+YN I        ++     + LK LDLS N     +       
Sbjct: 161 FAELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 148 SSLTSLYLYSNRLE 161
           + +T + L +N+L 
Sbjct: 214 AGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L         +++ L L+ N I         E  +    L+ L+L  N      +   
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNFI--YDVKGQ 187

Query: 145 AHLSSLTSLYLYSNRLE 161
              + L +L L SN+L 
Sbjct: 188 VVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
            + +   +  +++   + +          N+K LDLS N  +    + +A  + L  L L
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 156 YSNRL 160
            SN L
Sbjct: 66  SSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 94  PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSL 153
               +E+L+   NNI        +   SR    K + L+ N             S +  L
Sbjct: 97  VGPSIETLHAANNNI------SRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 154 YLYSNRLE 161
            L  N ++
Sbjct: 150 DLKLNEID 157

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           R + AS F   +QL+ L L        ++ E       L NL++LDL  +        + 
Sbjct: 37  RTVTASSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLPNLRILDLGSSKIYFLHPDAF 93

Query: 145 AHLSSLTSLYLYSNRLE 161
             L  L  L LY   L 
Sbjct: 94  QGLFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             LN+ +F   + L+ L L YN I    +         L NL++L+LS NL      S+ 
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEA----FYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 145 AHLSSLTSLYLYSNRL 160
             L  +  + L  N +
Sbjct: 335 YGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 72  LDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131
           L L         E  L   +F     L+ LYL +N +     +      S L+ L+ L L
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL----NSLPPGVFSHLTALRGLSL 511

Query: 132 SENLFNNSILSSVAHLSSLTSLYLYSNRL 160
           + N      LS     ++L  L +  N+L
Sbjct: 512 NSNRLTV--LSHNDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L +S F    ++  + L+ N+IA   +         L  L+ LDL +N      L+++
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQT----FKFLEKLQTLDLRDNA-----LTTI 377

Query: 145 AHLSSLTSLYLYSNRL 160
             + S+  ++L  N+L
Sbjct: 378 HFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             +    F     L+ L L YN +              L  +  +DL +N        + 
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLL----GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 145 AHLSSLTSLYLYSNRLE 161
             L  L +L L  N L 
Sbjct: 359 KFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 72  LDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131
           L L F G   L +  L    F   + L  L L  N I     +       +L++LK +D 
Sbjct: 102 LRLYFCG---LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS---FGKLNSLKSIDF 155

Query: 132 SENLFNNSILSSVAHLS--SLTSLYLYSNRLEGNID 165
           S N         +  L   +L+   L +N L   + 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENE-GIERLSRLSNLKMLDLSENLFNNSILSSVAHLS 148
              +    LE L+L  N +    E E   +    LS+L++L L+ N  N+      +HL+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 149 SLTSLYLYSNRL 160
           +L  L L SNRL
Sbjct: 505 ALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV-AHLS 148
            +       E L L +N I              L  L++L+L       +I      +L 
Sbjct: 18  QVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 149 SLTSLYLYSNRL 160
           +L  L L S+++
Sbjct: 74  NLRILDLGSSKI 85

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV----- 144
                   L+ L L  N  + C  +   +  S   +L+ L L EN+   +  + +     
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 145 AHLSSLTSLYLYSNRLE 161
             LS L  LYL  N L 
Sbjct: 477 EGLSHLQVLYLNHNYLN 493

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
            Y++   F     L  L L   N+        I  L+ L  L  LDLS N  +     S 
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLRE------IPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 145 AHLSSLTSLYLYSNRLE 161
             L  L  L++  ++++
Sbjct: 228 QGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 18/84 (21%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
           + +  + F   + LE L L  N+I        IE    + L+NL  L+L +N      L+
Sbjct: 77  QIIKVNSFKHLRHLEILQLSRNHIR------TIEIGAFNGLANLNTLELFDNR-----LT 125

Query: 143 SV-----AHLSSLTSLYLYSNRLE 161
           ++      +LS L  L+L +N +E
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 15/82 (18%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSR-----LSNLKMLDLSENLFNNS 139
             + +  F     L  L L             +  +S      LSNL+ L+L+       
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELK--------RLSYISEGAFEGLSNLRYLNLAMCNLRE- 199

Query: 140 ILSSVAHLSSLTSLYLYSNRLE 161
            + ++  L  L  L L  N L 
Sbjct: 200 -IPNLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
             +    F     L+ L++  + I      + IER     L +L  ++L+ N        
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQI------QVIERNAFDNLQSLVEINLAHNNLTLLPHD 273

Query: 143 SVAHLSSLTSLYLYSN 158
               L  L  ++L+ N
Sbjct: 274 LFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
                 L L  N I     N        L +L++L LS N      + +   L++L +L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 155 LYSNRL 160
           L+ NRL
Sbjct: 119 LFDNRL 124

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV-AHLS 148
           S+F   + L  L + + +             + LS+L++L ++ N F  + L  +   L 
Sbjct: 120 SVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 149 SLTSLYLYSNRLE 161
           +LT L L   +LE
Sbjct: 176 NLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L   +F    QL  L L  N ++   +    +     ++LK LDLS N    ++ S+   
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLG 99

Query: 147 LSSLTSLYLYSNRLE 161
           L  L  L    + L+
Sbjct: 100 LEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           R     +F     LE L +  N+       +     + L NL  LDLS+        ++ 
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 145 AHLSSLTSLYLYSNRL 160
             LSSL  L +  N  
Sbjct: 196 NSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
                 +FT  + L  L L    +      E +     + LS+L++L++S N F +    
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQL------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 143 SVAHLSSLTSLYLYSNRLE 161
               L+SL  L    N + 
Sbjct: 218 PYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 72  LDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131
           L LS   N  L  +   +        L+ L L +N +     N        L  L+ LD 
Sbjct: 57  LSLS--SN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDF 108

Query: 132 SENLFNNSILSSV-AHLSSLTSLYLYSNRLE 161
             +        SV   L +L  L +      
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
           F   +QLE L  +++N+   +    +     L NL  LD+S      +       LSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNL-KQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 152 SLYLYSNRLEGNI 164
            L +  N  + N 
Sbjct: 154 VLKMAGNSFQENF 166

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
             L+ + F     L+ L + +NN         ++      L++L++LD S N    S   
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFS------LDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 143 SVAHL-SSLTSLYLYSNRL 160
            + H  SSL  L L  N  
Sbjct: 242 ELQHFPSSLAFLNLTQNDF 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 7e-07
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 18/83 (21%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
           + + A  F     LE L L  N+I        IE    + L++L  L+L +N      L+
Sbjct: 88  QMIQADTFRHLHHLEVLQLGRNSIR------QIEVGAFNGLASLNTLELFDNW-----LT 136

Query: 143 SV-----AHLSSLTSLYLYSNRL 160
            +      +LS L  L+L +N +
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 23/98 (23%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNI--------AGCV--------ENEGIERLSR-----L 123
             + +  F    +L  L+L  N I                    E + +E +S      L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 124 SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161
            NLK L+L      +  + ++  L  L  L +  N   
Sbjct: 196 FNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 30/101 (29%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN---------- 134
            Y++   F     L+ L L   NI        +  L+ L  L+ L++S N          
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 135 ----------LFNNSILS----SVAHLSSLTSLYLYSNRLE 161
                     + N+ +      +   L+SL  L L  N L 
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
             +    F     L+ L++  + +        IER     L++L  L+L+ N  ++    
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQV------SLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 143 SVAHLSSLTSLYLYSN 158
               L  L  L+L+ N
Sbjct: 285 LFTPLRYLVELHLHHN 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSVA--HLSSL 150
            + L+ L +  N I        + +   + L+ + +++L  N   +S + + A   +  L
Sbjct: 120 PKTLQELRVHENEI------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 151 TSLYLYSNRL 160
           + + +    +
Sbjct: 174 SYIRIADTNI 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
             +  S+F    Q+  + L  N +    ++ GIE      +  L  + +++       ++
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPL----KSSGIENGAFQGMKKLSYIRIADTN-----IT 184

Query: 143 SVAH--LSSLTSLYLYSNRLE 161
           ++      SLT L+L  N++ 
Sbjct: 185 TIPQGLPPSLTELHLDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTS 152
              L  L+L+ N I        ++   L  L+NL  L LS N  +     S+A+   L  
Sbjct: 191 PPSLTELHLDGNKI------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 153 LYLYSNRLE 161
           L+L +N+L 
Sbjct: 245 LHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             ++A+       L  L L +N+I+  V+N     L+   +L+ L L+ N     +   +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSIS-AVDNGS---LANTPHLRELHLNNNKLV-KVPGGL 259

Query: 145 AHLSSLTSLYLYSNRLE 161
           A    +  +YL++N + 
Sbjct: 260 ADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 8/73 (10%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENE---GIERLSRLSNLKMLDLSENLFNNSILSSVA--H 146
               + ++ +YL  NNI+  + +         ++ ++   + L  N      +       
Sbjct: 259 LADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 147 LSSLTSLYLYSNR 159
           +    ++ L + +
Sbjct: 318 VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
              L L+ N I    + +       L NL  L L  N  +     + A L  L  LYL  
Sbjct: 54  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 158 NRLE 161
           N+L+
Sbjct: 110 NQLK 113

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 72  LDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSR--LSNLKML 129
           ++L    N  LK   +    F   ++L  + +   N         I  + +    +L  L
Sbjct: 150 VELG--TN-PLKSSGIENGAFQGMKKLSYIRIADTN---------ITTIPQGLPPSLTEL 197

Query: 130 DLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161
            L  N       +S+  L++L  L L  N + 
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 29/98 (29%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSEN---------- 134
           +    F   + L +L L  N I        I     + L  L+ L LS+N          
Sbjct: 67  IKDGDFKNLKNLHTLILINNKI------SKISPGAFAPLVKLERLYLSKNQLKELPEKMP 120

Query: 135 -------LFNNSILS----SVAHLSSLTSLYLYSNRLE 161
                  +  N I          L+ +  + L +N L+
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV 144
           + A+ F   + L  L+L  N +A       I+    + L+ L+ LDLS+N    S+  + 
Sbjct: 47  VPAASFRACRNLTILWLHSNVLAR------IDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100

Query: 145 -AHLSSLTSLYLYSNRLE 161
              L  L +L+L    L+
Sbjct: 101 FHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 71  QLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKM 128
           QLDLS   N  L  R ++ + F    +L +L+L+   +      + +       L+ L+ 
Sbjct: 84  QLDLS--DNAQL--RSVDPATFHGLGRLHTLHLDRCGL------QELGPGLFRGLAALQY 133

Query: 129 LDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161
           L L +N        +   L +LT L+L+ NR+ 
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 13/81 (16%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             ++A+ FT    LE L L  N     V+         L  L  L L         L  +
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCG-----LQEL 120

Query: 145 -----AHLSSLTSLYLYSNRL 160
                  L++L  LYL  N L
Sbjct: 121 GPGLFRGLAALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV 144
           L   LF     L+ LYL+ N +      + +       L NL  L L  N  ++    + 
Sbjct: 120 LGPGLFRGLAALQYLYLQDNAL------QALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 145 AHLSSLTSLYLYSNRL 160
             L SL  L L+ NR+
Sbjct: 174 RGLHSLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
           + L    F     L  L+L  N I        +       L +L  L L +N   +    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRI------SSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 143 SVAHLSSLTSLYLYSNRLE 161
           +   L  L +LYL++N L 
Sbjct: 196 AFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 8/76 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
             +    F     L+ L L  N +        +       L  L  L L  N  +     
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRV------AHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 143 SVAHLSSLTSLYLYSN 158
           ++A L +L  L L  N
Sbjct: 220 ALAPLRALQYLRLNDN 235

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             +     +    L  L L + NI   + +       RL  LK+L++S   + +++  + 
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNIN-AIRDYS---FKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 145 AHLSSLTSLYLYSNRLE 161
            +  +LTSL +    L 
Sbjct: 221 LYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV 144
           LN   F  F  LE L L  N +        +E    + L NL+ L L  N      L   
Sbjct: 47  LNQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100

Query: 145 AHLSSLTSLYLYSNRLE 161
             LS+LT L +  N++ 
Sbjct: 101 TGLSNLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L   +F     L+SL +  N++   + +      S L++L+ L L +    +    ++
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLV-YISHRA---FSGLNSLEQLTLEKCNLTSIPTEAL 172

Query: 145 AHLSSLTSLYLYSNRLE 161
           +HL  L  L L    + 
Sbjct: 173 SHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             +  S+     +L+ + L    +A  VE         L+ L++L++S N       S  
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLA-VVEPYA---FRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 145 AHLSSLTSLYLYSNRL 160
             + +L +L L SN L
Sbjct: 317 HSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 98  LESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
           L SL + + N+        +    +  L  L+ L+LS N  +    S +  L  L  + L
Sbjct: 226 LTSLSITHCNL------TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 156 YSNRLE 161
              +L 
Sbjct: 280 VGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
            Y++   F+    LE L LE  N+        I    LS L  L +L L     N     
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNL------TSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 143 SVAHLSSLTSLYLYSNRL 160
           S   L  L  L +     
Sbjct: 195 SFKRLYRLKVLEISHWPY 212

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             ++A+   PF +LE L L  N +           L  LS L+ LDL+ N      +  +
Sbjct: 47  SQISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQEL 95

Query: 145 AHLSSLTSLYLYSNRLE 161
               S+ +L+  +N + 
Sbjct: 96  LVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 89  ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS 148
           A L      LE L L+YN I        ++     + LK LDLS N     +       +
Sbjct: 162 AELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 149 SLTSLYLYSNRLE 161
            +T + L +N+L 
Sbjct: 215 GVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 96  QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYL 155
            + +   +  +++   + +          N+K LDLS N  +    + +A  + L  L L
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 156 YSNRLEG 162
            SN L  
Sbjct: 66  SSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L         +++ L L+ N I         E  +    L+ L+L  N      +     
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVV 189

Query: 147 LSSLTSLYLYSNRLE 161
            + L +L L SN+L 
Sbjct: 190 FAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 +E+L+   NNI+           SR    K + L+ N             S + 
Sbjct: 95  LLVGPSIETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 152 SLYLYSNRLE 161
            L L  N ++
Sbjct: 148 YLDLKLNEID 157

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
               Q +++L L    I        +  L+ LSNL++L L  N   N  +S +A L++L 
Sbjct: 103 IAGLQSIKTLDLTSTQI------TDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQ 154

Query: 152 SLYLYSNRLE 161
            L + + ++ 
Sbjct: 155 YLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              L+ LYL+ N I        I  L+ L+NL+ L +     ++  L+ +A+LS LT+L 
Sbjct: 128 LSNLQVLYLDLNQI------TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLK 179

Query: 155 LYSNRLE 161
              N++ 
Sbjct: 180 ADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 + +L      +        IE +  L+NL  L+L +N   +  L+ + +L+ +T
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 152 SLYLYSNRLE 161
            L L  N L+
Sbjct: 89  ELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                 L+ L +    +        +  L+ LS L  L   +N  ++  +S +A L +L 
Sbjct: 147 LAGLTNLQYLSIGNAQV------SDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLI 198

Query: 152 SLYLYSNRLE 161
            ++L +N++ 
Sbjct: 199 EVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                +L +L  + N I        I  L+ L NL  + L  N  ++  +S +A+ S+L 
Sbjct: 169 LANLSKLTTLKADDNKI------SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLF 220

Query: 152 SLYLYSNRL 160
            + L +  +
Sbjct: 221 IVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
                 +    +N+            + L  +  L           +  V +L++L  L 
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 155 LYSNRLE 161
           L  N++ 
Sbjct: 70  LKDNQIT 76

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
            + +   P+ +L  L L+   +        ++    L  L  LDLS N    S+      
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTK------LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQT 98

Query: 147 LSSLTSLYLYSNRLE 161
           L +LT L +  NRL 
Sbjct: 99  LPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV-AH 146
            L      L  L + +N +        +    L  L  L+ L L  N    ++   +   
Sbjct: 94  LLGQTLPALTVLDVSFNRL------TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 147 LSSLTSLYLYSNRL 160
              L  L L +N L
Sbjct: 147 TPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 21/80 (26%)

Query: 87  LNASLFTPFQQLESLYLEYNNI----AGCVENEGIERLSRLSNLKMLDLSENLFNNSILS 142
           L   L TP  +LE L L  NN+    AG         L+ L NL  L L EN      L 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGL--------LNGLENLDTLLLQENS-----LY 185

Query: 143 SVAH----LSSLTSLYLYSN 158
           ++         L   +L+ N
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 18/77 (23%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV----- 144
            T    L SL L +N++        I       + NL+ LDLS N      L ++     
Sbjct: 60  PTRLTNLHSLLLSHNHL------NFISSEAFVPVPNLRYLDLSSNH-----LHTLDEFLF 108

Query: 145 AHLSSLTSLYLYSNRLE 161
           + L +L  L LY+N + 
Sbjct: 109 SDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENL---FNNS 139
             L+  LF+  Q LE L L  N+I        ++R     ++ L+ L LS+N    F   
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHI------VVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 140 ILSSVAHLSSLTSLYLYSNRLE 161
           ++     L  L  L L SN+L+
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
            ++++  F P   L  L L  N++        ++    S L  L++L L  N     +  
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHL------HTLDEFLFSDLQALEVLLLYNNHIV-VVDR 129

Query: 143 SV-AHLSSLTSLYLYSNRLE 161
           +    ++ L  LYL  N++ 
Sbjct: 130 NAFEDMAQLQKLYLSQNQIS 149

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
                QLESLYL  N I        I  LSRL+ L  L L +N  ++  +  +A L+ L 
Sbjct: 130 LVHLPQLESLYLGNNKI------TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQ 181

Query: 152 SLYLYSNRLE 161
           +LYL  N + 
Sbjct: 182 NLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              ++ +    ++I      + ++ +  L N+  L L+ N   +  +  +A+L +L  L+
Sbjct: 45  LNSIDQIIANNSDI------KSVQGIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLF 96

Query: 155 LYSNRLE 161
           L  N+++
Sbjct: 97  LDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
               + L  L+L+ N +      + +  L  L  LK L L  N  ++  ++ + HL  L 
Sbjct: 86  LANLKNLGWLFLDENKV------KDLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLE 137

Query: 152 SLYLYSNRLE 161
           SLYL +N++ 
Sbjct: 138 SLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 9/67 (13%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
           F +     L+  ++            + L+++  +  + +   +  +  + +L ++T L+
Sbjct: 23  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 155 LYSNRLE 161
           L  N+L 
Sbjct: 75  LNGNKLT 81

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 68  RVIQLDLSFIGNWDLKERYLNAS---------LFTPFQQLESLYLEYNNIAGCVENEGIE 118
           R I L+L       ++E  L+           L   F  LE L L    +        + 
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL------ISVS 65

Query: 119 RLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161
            L +L  LK L+LSEN     +      L +LT L L  N+L+
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 25/86 (29%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN-----------------LFN 137
           F  L+ L+L +N I        +  L  L+ L+ L ++ N                 L N
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 138 NSI--LSSVAHLSSLTSLYLYSNRLE 161
           N +    S+ HL +L  L + +N+L+
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              +++   + +NI      + +  +   +NLK L LS N    S LS +  L+ L  L 
Sbjct: 40  LSGVQNFNGDNSNI------QSLAGMQFFTNLKELHLSHN--QISDLSPLKDLTKLEELS 91

Query: 155 LYSNRLE 161
           +  NRL+
Sbjct: 92  VNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 97  QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLY 156
            L  L+L+ N +         + L  L NL++L +  N   +  +  +  LS L  L L+
Sbjct: 107 CLSRLFLDNNEL------RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLH 158

Query: 157 SNRLE 161
            N + 
Sbjct: 159 GNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
                   L   ++        +     LS ++  +   +   +  L+ +   ++L  L+
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 155 LYSNRLE 161
           L  N++ 
Sbjct: 70  LSHNQIS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 97  QLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLY 156
            LE L +  N +      + I  L  LS L++LDL  N   N     +  L  +  + L 
Sbjct: 129 NLEILSIRNNKL------KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLT 180

Query: 157 SNRL 160
             + 
Sbjct: 181 GQKC 184

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              +  L L +N +           L+ L  L++L  S+N   N  +  VA+L  L  L 
Sbjct: 462 LLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 155 LYSNRLE 161
           L +NRL+
Sbjct: 515 LCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 94  PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSL 153
            +  +  L+L + ++        +  L +L  +  LDLS N    ++  ++A L  L  L
Sbjct: 439 EYADVRVLHLAHKDL------TVLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVL 491

Query: 154 YLYSNRLE 161
               N LE
Sbjct: 492 QASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVAHLSSL 150
               + LE L    N +      E ++ ++ L  L+ L L  N     + +  +     L
Sbjct: 482 LAALRCLEVLQASDNAL------ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 151 TSLYLYSNRL 160
             L L  N L
Sbjct: 536 VLLNLQGNSL 545

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA- 145
           L +  F  F +L+ L L    I      +G      LS+L  L L+ N      + S+A 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQ--TIEDGA--YQSLSHLSTLILTGNP-----IQSLAL 93

Query: 146 ----HLSSLTSLYLYSNRL 160
                LSSL  L      L
Sbjct: 94  GAFSGLSSLQKLVAVETNL 112

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV-A 145
           L    F+    L+ L     N+A  +EN  I     L  LK L+++ NL  +  L    +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA-SLENFPI---GHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 146 HLSSLTSLYLYSNRL 160
           +L++L  L L SN++
Sbjct: 147 NLTNLEHLDLSSNKI 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 27/88 (30%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN-------------------L 135
            +  + L L  NNI      E I  LS + NL++L L  N                   +
Sbjct: 47  LKACKHLALSTNNI------EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100

Query: 136 FNNSI--LSSVAHLSSLTSLYLYSNRLE 161
             N I  LS +  L +L  LY+ +N++ 
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNNKIT 128

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 13/74 (17%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA-----H 146
               + L  LY+E       +E      L  L  L+ L + ++      L  VA      
Sbjct: 27  LPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSG-----LRFVAPDAFHF 78

Query: 147 LSSLTSLYLYSNRL 160
              L+ L L  N L
Sbjct: 79  TPRLSRLNLSFNAL 92

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV 144
           ++ S       L++L L  N I        IE    S L +L+ LDLS N  + ++ SS 
Sbjct: 67  ISNSDLQRCVNLQALVLTSNGINT------IEEDSFSSLGSLEHLDLSYNYLS-NLSSSW 119

Query: 145 -AHLSSLTSLYLYSNRLE 161
              LSSLT L L  N  +
Sbjct: 120 FKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             +    F     LE L ++ +++    E +    L  + N+  L L        +L   
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQ-SYEPKS---LKSIQNVSHLILHMKQHI-LLLEIF 217

Query: 145 -AHLSSLTSLYLYSNRLEGN 163
               SS+  L L    L+  
Sbjct: 218 VDVTSSVECLELRDTDLDTF 237

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L++S F P   L  L L  N     +    +   S L+ L++L +        I    
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSL--FSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 145 -AHLSSLTSLYLYSNRL 160
            A L+ L  L + ++ L
Sbjct: 170 FAGLTFLEELEIDASDL 186

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENE----GIERLSRLSNLKMLDLSENLFNNSILS 142
           L          +E L L   ++     +E        L +    + + +++      ++ 
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 143 SVAHLSSLTSLYLYSNRLEG 162
            +  +S L  L    N+L+ 
Sbjct: 272 LLNQISGLLELEFSRNQLKS 291

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 35/127 (27%)

Query: 53  DCCQWERVECSNTTGRVI--------QLDLSFIGNWDLKERYLNASLFTPFQQLESLYLE 104
           +C Q E    +    + I         L L      +   R + +  F+    +  +Y+ 
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLI-----ETHLRTIPSHAFSNLPNISRIYVS 63

Query: 105 YNNIAGCVENEGIERLSR-----LSNLKMLDLSENLFNNSILSSV-----AHLSSLTSLY 154
            +          +++L       LS +  +++     N   L+ +       L  L  L 
Sbjct: 64  IDV--------TLQQLESHSFYNLSKVTHIEIR----NTRNLTYIDPDALKELPLLKFLG 111

Query: 155 LYSNRLE 161
           +++  L+
Sbjct: 112 IFNTGLK 118

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 81  DLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNN 138
                Y  +++++  ++++ + +E + +        +       L +L+ LDLSENL   
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKV------FLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 139 SIL---SSVAHLSSLTSLYLYSNRLE 161
             L   +      SL +L L  N L 
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149
           S      +L+ LY+  N +      + +   S    L ++ +S N   +        L+S
Sbjct: 445 SFSLFLPRLQELYISRNKL------KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 150 LTSLYLYSNRL 160
           L  ++L++N  
Sbjct: 499 LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 25/117 (21%)

Query: 62  CSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS 121
           C      +  L LS   N  L+       +    + L SL +  N       +   +   
Sbjct: 356 CKGAWPSLQTLVLS--QN-HLRSMQKTGEILLTLKNLTSLDISRNTF-----HPMPDSCQ 407

Query: 122 RLSNLKMLDLSEN-----------------LFNNSILSSVAHLSSLTSLYLYSNRLE 161
               ++ L+LS                   + NN++ S    L  L  LY+  N+L+
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
            Y+          L+ L L+ + I        IE      L +L+ LDLS+N  ++   S
Sbjct: 39  TYIGHGDLRACANLQVLILKSSRI------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92

Query: 143 SVAHLSSLTSLYLYSNRL 160
               LSSL  L L  N  
Sbjct: 93  WFGPLSSLKYLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L++S F P   L+ L L  N     +    +     L+NL+ L +      + I    
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL--FPNLTNLQTLRIGNVETFSEIRRID 143

Query: 145 -AHLSSLTSLYLYSNRLE 161
            A L+SL  L + +  L 
Sbjct: 144 FAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           +    F     L  L ++  ++           L  + ++  L L  +     +      
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQS----LKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 147 LSSLTSLYLYSNRLEGN 163
           LSS+  L L    L   
Sbjct: 195 LSSVRYLELRDTNLARF 211

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
            Q LE L +  NN+              L  L+ L +S N      L   +    L  + 
Sbjct: 430 PQTLEVLDVSNNNLD--------SFSLFLPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 155 LYSNRLE 161
           +  N+L+
Sbjct: 480 ISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 88  NASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147
             SLF     L++L +        +        + L++L  L++      N    S+  +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 148 SSLTSLYLYSNRLE 161
             +  L L+ +   
Sbjct: 172 RDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLY 154
              ++SL L +N I       G   L   +NL++L L  +  N     +   L SL  L 
Sbjct: 25  TAAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 155 LYSNRL 160
           L  N L
Sbjct: 81  LSDNHL 86

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 15/90 (16%)

Query: 81  DLKERYLNAS---------LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131
           D+KE  L+ S         L   F++LE L      +        I  L +L+ LK L+L
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLEL 71

Query: 132 SENLFNNSILSSVAHLSSLTSLYLYSNRLE 161
           S+N  +  +        +LT L L  N+++
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
           R L A+L   F+Q+E L L    I      E I+    +    ++ L +  N        
Sbjct: 58  RKLPAALLDSFRQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111

Query: 143 SVAHLSSLTSLYLYSNRLE 161
              ++  LT L L  N L 
Sbjct: 112 VFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
           RYL   +F     L  L LE N++        + R        L  L +S N        
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDL------SSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159

Query: 143 SVAHLSSLTSLYLYSNRLE 161
           +    +SL +L L SNRL 
Sbjct: 160 TFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER-LSRLSNLKMLDLSENLFNNSILSS 143
             +    F   Q+LE LY+  N +        +      +  LK+LDLS N     +  +
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHL-LHVERN 313

Query: 144 VAHLSSLTSLYLYSNRLE 161
                 L +LYL  N + 
Sbjct: 314 QPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             +    F     L++L L  N +        ++ LS + +L   ++S NL     LS++
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRL------THVD-LSLIPSLFHANVSYNL-----LSTL 201

Query: 145 AHLSSLTSLYLYSNRL 160
           A   ++  L    N +
Sbjct: 202 AIPIAVEELDASHNSI 217

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 91  LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSL 150
           L     Q +++    N I        ++    L  LK L ++ N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 151 TSLYLYSNRLE 161
           T L L +N L 
Sbjct: 91  TELILTNNSLV 101

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 84  ERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSIL 141
              +  + F     L  L L+YN          +E    + L+NL++L L++   + ++L
Sbjct: 67  GLVIRNNTFRGLSSLIILKLDYNQF------LQLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 142 SSVA--HLSSLTSLYLYSNRLE 161
           S      L+SL  L L  N ++
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIK 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV-A 145
           LN + F+  Q L+ L +E       + N        LS+L +L L  N F   + +    
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKLDYNQF-LQLETGAFN 100

Query: 146 HLSSLTSLYLYSNRLE 161
            L++L  L L    L+
Sbjct: 101 GLANLEVLTLTQCNLD 116

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV 144
           L  S+F+ F  LE L L  N I        I+      L++L  L+LS+N    SI S +
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEI------NKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRM 342

Query: 145 -AHLSSLTSLYLYSNRLE 161
             +L  L  L L  N + 
Sbjct: 343 FENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 71  QLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLD 130
            L L+     +L    L+ + F P   LE L L  NNI   ++         +    +LD
Sbjct: 107 VLTLTQ--C-NLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASF--FLNMRRFHVLD 160

Query: 131 LSENLFNNSILSSVAHLSS--LTSLYLYSNRL 160
           L+ N   +     + +      T L L S  L
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 14/77 (18%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV-- 144
           +++ +F    +LE L L YN+I   + ++       L NLK L L  N      L SV  
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHI-RALGDQS---FLGLPNLKELALDTNQ-----LKSVPD 388

Query: 145 ---AHLSSLTSLYLYSN 158
                L+SL  ++L++N
Sbjct: 389 GIFDRLTSLQKIWLHTN 405

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 18/74 (24%)

Query: 95  FQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV-----AHL 147
            + L  L+L++N I      + IE   L R S L  L L  N      +  +     + L
Sbjct: 192 PETLNELHLDHNKI------QAIELEDLLRYSKLYRLGLGHNQ-----IRMIENGSLSFL 240

Query: 148 SSLTSLYLYSNRLE 161
            +L  L+L +N+L 
Sbjct: 241 PTLRELHLDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
           + +       + +L  L L +N I   +EN     LS L  L+ L L  N   + + + +
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIR-MIENGS---LSFLPTLRELHLDNNKL-SRVPAGL 260

Query: 145 AHLSSLTSLYLYSNRLE 161
             L  L  +YL++N + 
Sbjct: 261 PDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 25/96 (26%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN------------ 134
           L    F   Q L +L L  N I+  +  +     S L  L+ L +S+N            
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISK-IHEKA---FSPLRKLQKLYISKNHLVEIPPNLPSS 124

Query: 135 -----LFNNSILS----SVAHLSSLTSLYLYSNRLE 161
                + +N I        + L ++  + +  N LE
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 13/84 (15%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER-LSRLSNLKMLDLSENLFNN----- 138
           R +     +    L  L+L+ N +        +   L  L  L+++ L  N         
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKL------SRVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 139 -SILSSVAHLSSLTSLYLYSNRLE 161
              +      +    + L++N + 
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS-RLSNLKMLDLSENLFNNSILSS 143
           R +   +F+  + +  + +  N +    EN G E  +     L  L +SE       L+ 
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPL----ENSGFEPGAFDGLKLNYLRISEAK-----LTG 186

Query: 144 VAH--LSSLTSLYLYSNRLE 161
           +      +L  L+L  N+++
Sbjct: 187 IPKDLPETLNELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
              L L+ N+I+   +++       L +L  L L  N  +     + + L  L  LY+  
Sbjct: 56  TTLLDLQNNDISELRKDD----FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 158 NRLE 161
           N L 
Sbjct: 112 NHLV 115

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILS 142
           R L A+L   F+Q+E L L    I      E I+    +    ++ L +  N        
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117

Query: 143 SVAHLSSLTSLYLYSNRLE 161
              ++  LT L L  N L 
Sbjct: 118 VFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER-LSRLSNLKMLDLSENLFNNSILSS 143
             +    F   Q+LE LY+  N +        +      +  LK+LDLS N     +  +
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHL-LHVERN 319

Query: 144 VAHLSSLTSLYLYSNRLE 161
                 L +LYL  N + 
Sbjct: 320 QPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             ++   F     ++ LY+ +N I        +     +  L +L L  N  ++      
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIR--YLPPHV--FQNVPLLTVLVLERNDLSSLPRGIF 143

Query: 145 AHLSSLTSLYLYSNRLE 161
            +   LT+L + +N LE
Sbjct: 144 HNTPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 12/77 (15%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             +    F     L++L L  N +           LS + +L   ++S NL     LS++
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNL-----LSTL 207

Query: 145 AHLSSLTSLYLYSNRLE 161
           A   ++  L    N + 
Sbjct: 208 AIPIAVEELDASHNSIN 224

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 36/133 (27%)

Query: 50  GATDC-----CQWERVECSN-------------TTGRVIQLDLSFIGNWDLKERYLNASL 91
           G+  C     C+   V+CSN             T     +L L+      L+       +
Sbjct: 1   GSLACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTA----ELRLNNNEFTVLEAT----GI 52

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSV-AHLS 148
           F    QL  +    N I        IE       S +  + L+ N    ++   +   L 
Sbjct: 53  FKKLPQLRKINFSNNKI------TDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLE 105

Query: 149 SLTSLYLYSNRLE 161
           SL +L L SNR+ 
Sbjct: 106 SLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           +   +F   + L++L L  N I  CV N+       LS++++L L +N      +++VA 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDS---FIGLSSVRLLSLYDNQ-----ITTVAP 146

Query: 147 -----LSSLTSLYLYSN 158
                L SL++L L +N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 22/119 (18%)

Query: 62  CSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS 121
           C      +  L L   G        + ++L     QL+ L L +N++         +  S
Sbjct: 196 CPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 122 RL------------------SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162
           +L                  + L +LDLS N  +     S   L  + +L L  N    
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN---NSILSS 143
            +      F  L +L L  N   G           +   L++L L             + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 144 VAHLSSLTSLYLYSNRLEGNID 165
            A    L  L L  N L     
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAG 245

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 22/84 (26%)

Query: 87  LNASLFTPFQQLESLYLEYNNI----AGCVENEGIERLSRLSNLKMLDLSENLFNNSILS 142
           L +  F    +L  LYL  N +    AG            L NL+ L +++N      L 
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTLPAGI--------FKELKNLETLWVTDNK-----LQ 98

Query: 143 SV-----AHLSSLTSLYLYSNRLE 161
           ++       L +L  L L  N+L+
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLK 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
           L  SLF     L+ L L  N I  C+          L NL +L L +N        + + 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLR-VDA--FQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 147 LSSLTSLYLYSN 158
           L ++ +++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 14/80 (17%)

Query: 87  LNASLFTPFQQLESLYLEYNNI----AGCVENEGIERLSRLSNLKMLDLSENLFNNSILS 142
           +    F+P+++L  + L  N I                  L +L  L L  N     +  
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQISELAPDA--------FQGLRSLNSLVLYGNKIT-ELPK 97

Query: 143 SV-AHLSSLTSLYLYSNRLE 161
           S+   L SL  L L +N++ 
Sbjct: 98  SLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 14/81 (17%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144
             L    F   + L SL L  N I      + +     L +L++L L+ N      ++ +
Sbjct: 69  SELAPDAFQGLRSLNSLVLYGNKITEL--PKSL--FEGLFSLQLLLLNANK-----INCL 119

Query: 145 AH-----LSSLTSLYLYSNRL 160
                  L +L  L LY N+L
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 18/70 (25%)

Query: 99  ESLYLEYNNIAGCVENEGIER--LSRLSNLKMLDLSENLFNNSILSSVA-----HLSSLT 151
             + LE N I        I     S    L+ +DLS N      +S +A      L SL 
Sbjct: 35  TEIRLEQNTIKV------IPPGAFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLN 83

Query: 152 SLYLYSNRLE 161
           SL LY N++ 
Sbjct: 84  SLVLYGNKIT 93

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS--RLSNLKMLDLSENLFNNSILS 142
           +YL+ S+F   Q+LE L L +N +           +S     NLK LDLS N F+   + 
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVK---------ISCHPTVNLKHLDLSFNAFDALPIC 108

Query: 143 SV-AHLSSLTSLYLYSNRL 160
               ++S L  L L +  L
Sbjct: 109 KEFGNMSQLKFLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
                 +  + L SL +  N +   +             +K+LDL  N    SI   V  
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFR------CLPPRIKVLDLHSNKIK-SIPKQVVK 442

Query: 147 LSSLTSLYLYSNRL 160
           L +L  L + SN+L
Sbjct: 443 LEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 87  LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146
             + ++  F  +       +              S++S    LD S NL  +++  +  H
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLC----PSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 147 LSSLTSLYLYSNRLE 161
           L+ L +L L  N+L+
Sbjct: 347 LTELETLILQMNQLK 361

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 89  ASLFTPFQQLESLYLEYNNIAGCVENEGIER-----LSRLSNLKMLDLSENLFNN----S 139
           A  F   + L ++ +  N I      EGIE      L+    LK+LDL +N F +    +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGI----RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 140 ILSSVAHLSSLTSLYLYSNRL 160
           +  ++    +L  L L    L
Sbjct: 236 LAIALKSWPNLRELGLNDCLL 256

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS--RLSNLKMLDLSENLFNNSILS 142
           R L+  +F   Q LE L + +N +           +S   +++L+ LDLS N F+   + 
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRLQN---------ISCCPMASLRHLDLSFNDFDVLPVC 139

Query: 143 SV-AHLSSLTSLYLYSNRL 160
               +L+ LT L L + + 
Sbjct: 140 KEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 91  LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSL 150
                + +  L L  N + G V       L     +K+LDL  N    SI   V HL +L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVF----RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475

Query: 151 TSLYLYSNRL 160
             L + SN+L
Sbjct: 476 QELNVASNQL 485

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 14/83 (16%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLD------LSENLFNN 138
           R +    F+ F  LE + +  N++   +E +    L +L  +++        ++   F N
Sbjct: 43  RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102

Query: 139 SILSSVAHLSSLTSLYLYSNRLE 161
                   L +L  L + +  ++
Sbjct: 103 --------LPNLQYLLISNTGIK 117

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 10/72 (13%)

Query: 90  SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149
            L      LE +    N +      E +  L  L  L  +       NNS+        S
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYAD----NNSLKKLPDLPLS 216

Query: 150 LTSLYLYSNRLE 161
           L S+   +N LE
Sbjct: 217 LESIVAGNNILE 228

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 56  QWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFT-----PFQQLESLYLEYNNIAG 110
            W+ V C   T  +I+  L+ +   + ++ +   S+F      P   L  ++ +      
Sbjct: 346 NWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV----- 399

Query: 111 CVENEGIERLSRLSNLKMLDLSENLFNNSI----LSSVAHLSSLTSL 153
            ++++ +  +++L    +++        SI    L     L +  +L
Sbjct: 400 -IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 15/87 (17%)

Query: 85  RYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL----SNLKMLDLSENLFNN-- 138
             L     +    + SL L  N +        +E L  L     +L+ + L  ++  N  
Sbjct: 214 AELAYIFSSIPNHVVSLNLCLNCL----HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269

Query: 139 -----SILSSVAHLSSLTSLYLYSNRL 160
                ++ ++  ++  +  +      +
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEI 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.5
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.47
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.37
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.37
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.34
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.34
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.32
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.31
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.3
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.29
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.27
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.26
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.2
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.2
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.04
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.03
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.99
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.98
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.98
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.98
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.98
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.92
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.92
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.85
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.84
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.79
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.4
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.19
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.02
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.52
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.56
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.46
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.11
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.94
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.83
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.2

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=7.5e-25  Score=169.98  Aligned_cols=140  Identities=30%  Similarity=0.502  Sum_probs=102.1

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcc--eeeEEEeCCC--CCEEEEEcCCCCCCC---ccc-------
Q 043924           19 GCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQ--WERVECSNTT--GRVIQLDLSFIGNWD---LKE-------   84 (167)
Q Consensus        19 ~~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~~---l~~-------   84 (167)
                      .|.++|++||++||+++.++. .+.+|..+.   +||.  |.||+|+...  ++|+.|+++++.+..   +..       
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~---~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~   77 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTS---CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCC---CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence            588999999999999996653 788998766   8998  9999998633  799999999998863   110       


Q ss_pred             ---------cc---cCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCE
Q 043924           85 ---------RY---LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTS  152 (167)
Q Consensus        85 ---------~~---l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~  152 (167)
                               +.   ..+..+..+++|++|++++|.+++.+|..    +..+++|++|++++|++++.+|..+.++++|++
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence                     00   11223555666666666666666666665    677777777777777777777777777777777


Q ss_pred             EECcCCcceecCCC
Q 043924          153 LYLYSNRLEGNIDV  166 (167)
Q Consensus       153 L~L~~N~lsG~iP~  166 (167)
                      |++++|+++|.+|.
T Consensus       154 L~L~~N~l~~~~p~  167 (313)
T 1ogq_A          154 ITFDGNRISGAIPD  167 (313)
T ss_dssp             EECCSSCCEEECCG
T ss_pred             EECcCCcccCcCCH
Confidence            77777777777664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=4e-23  Score=177.07  Aligned_cols=141  Identities=27%  Similarity=0.303  Sum_probs=102.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcceeeEEEeCCCCCEEEEEcCCCCCCCc----cc------
Q 043924           15 GGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDL----KE------   84 (167)
Q Consensus        15 ~~~~~~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~l----~~------   84 (167)
                      ++++++.++|++||++||+++.++. .+++|..+.   +||.|.||+|+  .++|+.|+|+++.+...    ..      
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~---~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~   77 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNK---NPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLT   77 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTS---CGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCC---CCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccC
Confidence            3445557889999999999997665 899998766   99999999999  68999999999876531    10      


Q ss_pred             ------c---cc--CCccccCCCCccEEEcCCCceeeecCc--ccccccCCCCCCCEEeCcCCcCCchhhHhh-hcCCCC
Q 043924           85 ------R---YL--NASLFTPFQQLESLYLEYNNIAGCVEN--EGIERLSRLSNLKMLDLSENLFNNSILSSV-AHLSSL  150 (167)
Q Consensus        85 ------~---~l--~~~~~~~l~~L~~L~Ls~n~l~g~ip~--~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l-~~l~~L  150 (167)
                            +   .+  .+..+..+++|++|+|++|.++|.+|.  .    ++++++|++|++++|++++.+|..+ .++++|
T Consensus        78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence                  0   00  014577788888888888888888887  5    7777777777777777776666554 566666


Q ss_pred             CEEECcCCcceecCC
Q 043924          151 TSLYLYSNRLEGNID  165 (167)
Q Consensus       151 ~~L~L~~N~lsG~iP  165 (167)
                      ++|++++|+++|.+|
T Consensus       154 ~~L~Ls~n~l~~~~~  168 (768)
T 3rgz_A          154 EVLDLSANSISGANV  168 (768)
T ss_dssp             SEEECCSSCCEEETH
T ss_pred             CEEECCCCccCCcCC
Confidence            666666666665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=2e-21  Score=163.55  Aligned_cols=80  Identities=19%  Similarity=0.249  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHHHHHhcCC-CCCCC-------CCCCCCCCCCCCCcce---eeEEEeCCCCCEEEEEcCCCCCCCccccc
Q 043924           18 EGCLDQERFALLRLKLFFD-DPFNS-------LHHWVDDEGATDCCQW---ERVECSNTTGRVIQLDLSFIGNWDLKERY   86 (167)
Q Consensus        18 ~~~~~~~~~aL~~~k~~~~-~~~~~-------~~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~~l~~~~   86 (167)
                      .+....|+.||.+++++++ +.+..       ..+|+.+.   ++|.|   .||+|+. .++|+.|+|+++++...    
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~---~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~----   96 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNK---ELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGR----   96 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSS---CGGGTTCCTTEEECT-TCCEEEEECTTSCCEEE----
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCC---CcccccCCCCeEEcC-CCCEEEEEecCcccCCc----
Confidence            3344579999999999983 32222       23798876   99999   9999986 58999999999987521    


Q ss_pred             cCCccccCCCCccEEEcCCC
Q 043924           87 LNASLFTPFQQLESLYLEYN  106 (167)
Q Consensus        87 l~~~~~~~l~~L~~L~Ls~n  106 (167)
                      + ++.++++++|++|+|++|
T Consensus        97 l-p~~l~~L~~L~~L~Ls~N  115 (636)
T 4eco_A           97 V-PDAIGQLTELEVLALGSH  115 (636)
T ss_dssp             E-CGGGGGCTTCCEEESCCG
T ss_pred             C-ChHHhcCccceEEECcCC
Confidence            1 234556666666666555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=7e-21  Score=165.15  Aligned_cols=82  Identities=18%  Similarity=0.235  Sum_probs=55.2

Q ss_pred             CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC----CCCCCcce------------eeEEEeCCCCCEEEEEcCCCCC
Q 043924           16 GSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDE----GATDCCQW------------ERVECSNTTGRVIQLDLSFIGN   79 (167)
Q Consensus        16 ~~~~~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~----~~~~~c~w------------~gv~C~~~~~~v~~L~L~~~~l   79 (167)
                      .++++..+|+.||++||+++.++     +|+.+.    ..+++|.|            .||+|+. .++|+.|+|+++++
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L  335 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA  335 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred             cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence            34455678999999999999544     676532    22234999            9999997 68999999999987


Q ss_pred             CCccccccCCccccCCCCccEEEc-CCCce
Q 043924           80 WDLKERYLNASLFTPFQQLESLYL-EYNNI  108 (167)
Q Consensus        80 ~~l~~~~l~~~~~~~l~~L~~L~L-s~n~l  108 (167)
                      ...    + ++.+++|++|++|+| ++|.+
T Consensus       336 ~G~----i-p~~l~~L~~L~~LdLss~N~l  360 (876)
T 4ecn_A          336 KGR----V-PDAIGQLTELKVLSFGTHSET  360 (876)
T ss_dssp             EEE----E-CGGGGGCTTCCEEESCCTTHH
T ss_pred             CCc----C-chHHhccccceEeeecccccc
Confidence            411    0 233445555555555 44433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=2.7e-20  Score=145.25  Aligned_cols=138  Identities=12%  Similarity=0.146  Sum_probs=111.2

Q ss_pred             CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCCC-CCCCCCCcceeeEEEeC--------CCCCEEEEEcCCCCCCCccccc
Q 043924           17 SEGCLDQERFALLRLKLFF-DDPFNSLHHWVD-DEGATDCCQWERVECSN--------TTGRVIQLDLSFIGNWDLKERY   86 (167)
Q Consensus        17 ~~~~~~~~~~aL~~~k~~~-~~~~~~~~~W~~-~~~~~~~c~w~gv~C~~--------~~~~v~~L~L~~~~l~~l~~~~   86 (167)
                      ..++..+|++||++||+.+ .++..+...|.. ..+..++|.|.|+.|+.        ...+|+.|+|+++.+..+    
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~l----   96 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF----   96 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSC----
T ss_pred             ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhc----
Confidence            3445578899999999988 555566778941 11123899999999952        357899999999998755    


Q ss_pred             cCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           87 LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        87 l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                        +..+..+++|++|++++|.++ .+|..    ++.+++|++|++++|+++ .+|..++++++|++|++++|++.|.+|.
T Consensus        97 --p~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A           97 --PDQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             --CSCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             --ChhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence              334667999999999999998 78887    889999999999999998 7888899999999999999999888886

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=7.9e-16  Score=111.29  Aligned_cols=105  Identities=23%  Similarity=0.289  Sum_probs=65.3

Q ss_pred             CCcceeeEEEeCC---------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCC
Q 043924           53 DCCQWERVECSNT---------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL  123 (167)
Q Consensus        53 ~~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l  123 (167)
                      ..|.|+.+.|+..         ...++.|++++|.+..+..    ...+..+++|++|++++|.+++..|..    |..+
T Consensus         6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l   77 (192)
T 1w8a_A            6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNA----FEGA   77 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred             CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhH----cCCc
Confidence            3467888888741         2367889999988865432    113555666666666666666555554    5666


Q ss_pred             CCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924          124 SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       124 ~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ++|++|++++|++++..|..|.++++|++|+|++|++++.+|
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence            666666666666665555555566666666666666665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=1.4e-15  Score=112.91  Aligned_cols=110  Identities=24%  Similarity=0.242  Sum_probs=63.3

Q ss_pred             CCCCCCCCCCCcceeeEEEeC---------CCCCEEEEEcCCCCCCCcccc-------------------ccCCccccCC
Q 043924           44 HWVDDEGATDCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKER-------------------YLNASLFTPF   95 (167)
Q Consensus        44 ~W~~~~~~~~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l   95 (167)
                      .|....   ..|.|.+|.|+.         ....++.|++++|.+..+...                   .+++..|..+
T Consensus        11 ~~~~~~---~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l   87 (229)
T 3e6j_A           11 AACPSQ---CSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL   87 (229)
T ss_dssp             CCCCTT---CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCCCC---CEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence            444444   899999999975         235678899999988644210                   0111223444


Q ss_pred             CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ++|++|+|++|.+++..+..    +..+++|++|++++|+++ .+|..+..+++|++|+|++|+++
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            55555555555555333332    455555555555555555 45555555666666666666655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.61  E-value=7e-16  Score=132.23  Aligned_cols=91  Identities=30%  Similarity=0.389  Sum_probs=83.9

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      ..++.|++++|.++..     .+..++.++.|+.|+|++|.++|.+|..    ++.+++|++|||++|+++|.+|..+++
T Consensus       632 ~~L~~LdLs~N~l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~----l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGY-----IPKEIGSMPYLFILNLGHNDISGSIPDE----VGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             BCCCEEECCSSCCBSC-----CCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ccccEEECcCCccccc-----CCHHHhccccCCEEeCcCCccCCCCChH----HhCCCCCCEEECCCCcccCcCChHHhC
Confidence            4578999999988632     2556889999999999999999999998    999999999999999999999999999


Q ss_pred             CCCCCEEECcCCcceecCCC
Q 043924          147 LSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +++|++|++++|+++|.||+
T Consensus       703 l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCCCSEEECCSSEEEEECCS
T ss_pred             CCCCCEEECcCCcccccCCC
Confidence            99999999999999999996

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=3.1e-15  Score=106.30  Aligned_cols=103  Identities=23%  Similarity=0.309  Sum_probs=86.4

Q ss_pred             CcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCC
Q 043924           54 CCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS  124 (167)
Q Consensus        54 ~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~  124 (167)
                      .|.|+.+.|+.         ....++.|+|++|.++.+.     +..|..+++|++|+|++|.+++..+..    |..++
T Consensus         8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~   78 (170)
T 3g39_A            8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLT   78 (170)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred             CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccC-----hhhhcCcccCCEEECCCCCcCccChhh----ccCCC
Confidence            36788899974         1356788999999987543     456888999999999999999655554    78999


Q ss_pred             CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924          125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +|++|+|++|+|++..|..|.++++|++|+|++|++++..+
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99999999999998777789999999999999999987643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1e-14  Score=103.77  Aligned_cols=100  Identities=24%  Similarity=0.340  Sum_probs=58.2

Q ss_pred             CCcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCC
Q 043924           53 DCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL  123 (167)
Q Consensus        53 ~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l  123 (167)
                      ..|.|.++.|+.         ....++.|+++++.+..+.     +..+..+++|++|++++|.+++..+..    +..+
T Consensus         5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l   75 (177)
T 2o6r_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKL   75 (177)
T ss_dssp             CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred             CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeC-----HHHhcCcccccEEECCCCcceEeChhH----ccCC
Confidence            456899999974         1346889999998876432     233445555666666666555333332    4555


Q ss_pred             CCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          124 SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       124 ~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ++|++|++++|++++..+..+.++++|++|++++|+++
T Consensus        76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence            55555555555555444444455555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.56  E-value=1.9e-14  Score=104.79  Aligned_cols=106  Identities=25%  Similarity=0.339  Sum_probs=61.8

Q ss_pred             CCcceeeEEEeCC---------CCCEEEEEcCCCCCCCcccc-------------------ccCCccccCCCCccEEEcC
Q 043924           53 DCCQWERVECSNT---------TGRVIQLDLSFIGNWDLKER-------------------YLNASLFTPFQQLESLYLE  104 (167)
Q Consensus        53 ~~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls  104 (167)
                      ..|.|.+|.|+..         ..+++.|+++++.+..+...                   .+.+..+..+++|++|+++
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            4578999999751         34688999999987643321                   0111223445555555555


Q ss_pred             CCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          105 YNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       105 ~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|.+++..+..    +..+++|++|++++|++++..+..+.++++|++|++++|++++
T Consensus        85 ~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           85 TNQLQSLPNGV----FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             SSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCCccCHhH----hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            55555333332    4556666666666666665444445666666666666666653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.55  E-value=2.8e-14  Score=105.24  Aligned_cols=105  Identities=22%  Similarity=0.317  Sum_probs=58.2

Q ss_pred             CCcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc-------
Q 043924           53 DCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG-------  116 (167)
Q Consensus        53 ~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~-------  116 (167)
                      ..|.|..|.|..         ....++.|++++|.+..+.     +..|..+++|++|++++|.+++..|...       
T Consensus         9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~-----~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B            9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIP-----PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN   83 (220)
T ss_dssp             SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEEC-----TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred             CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcC-----HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence            346788999974         1246889999999876443     2233444444444444444444333330       


Q ss_pred             -------------ccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          117 -------------IERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       117 -------------~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                                   ...|..+++|++|+|++|++++..|..|..+++|++|+|++|++++
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence                         0014455555555555555555555555555556666666665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=3.2e-14  Score=104.88  Aligned_cols=109  Identities=23%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             CCcceeeEEEeCC---------CCCEEEEEcCCCCCCCcccc--------------------ccCCccccCCCCccEEEc
Q 043924           53 DCCQWERVECSNT---------TGRVIQLDLSFIGNWDLKER--------------------YLNASLFTPFQQLESLYL  103 (167)
Q Consensus        53 ~~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~--------------------~l~~~~~~~l~~L~~L~L  103 (167)
                      ..|.|..+.|+..         ...++.|++++|.+..+...                    .+.+..|..+++|++|++
T Consensus         9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A            9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            3467888888641         23467888888887644210                    011223445555555555


Q ss_pred             CCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924          104 EYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       104 s~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ++|.+++..|..    |..+++|++|++++|++++..|..|..+++|++|+|++|++++..|
T Consensus        89 s~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           89 TSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             CSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            555555444433    5566666666666666665556666666666666666666665444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=3.7e-14  Score=102.66  Aligned_cols=99  Identities=24%  Similarity=0.198  Sum_probs=74.1

Q ss_pred             CcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCC
Q 043924           54 CCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS  124 (167)
Q Consensus        54 ~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~  124 (167)
                      .|.|..+.|+.         ....++.|++++|.++.+.      ..+..+++|++|++++|.+++..+..    |..++
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l~   78 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP------KELSNYKHLTLIDLSNNRISTLSNQS----FSNMT   78 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC------GGGGGCTTCCEEECCSSCCCCCCTTT----TTTCT
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH------HHhhcccCCCEEECCCCcCCEeCHhH----ccCCC
Confidence            45678888864         1346889999999887542      34667788888888888887655555    77788


Q ss_pred             CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|++|+|++|++++..|..|..+++|++|+|++|++++
T Consensus        79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence            88888888888887777777788888888888888773

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=2.6e-14  Score=103.27  Aligned_cols=91  Identities=27%  Similarity=0.305  Sum_probs=81.9

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      -.+++.|+|++|.++.+.     +..|..+++|++|++++|.+++..|..    |..+++|++|++++|++++.+|..+.
T Consensus        53 l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~  123 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIE-----PNAFEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             CTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSST
T ss_pred             CCCCCEEECCCCCCCCcC-----HhHcCCcccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhh
Confidence            457899999999987543     456888999999999999999888776    89999999999999999999999999


Q ss_pred             cCCCCCEEECcCCcceecCC
Q 043924          146 HLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .+++|++|+|++|+++|..|
T Consensus       124 ~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          124 HLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TCTTCCEEECTTCCBCCSGG
T ss_pred             cCCCCCEEEeCCCCccCcCc
Confidence            99999999999999998765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.50  E-value=8.9e-14  Score=115.36  Aligned_cols=101  Identities=27%  Similarity=0.281  Sum_probs=68.3

Q ss_pred             CCccee----eEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccc
Q 043924           53 DCCQWE----RVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER  119 (167)
Q Consensus        53 ~~c~w~----gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~  119 (167)
                      .+|.+.    .|.|..         .+..++.|+|++|.++.+.     +..|.++++|++|+|++|.+++..|..    
T Consensus        25 ~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~-----~~~f~~l~~L~~L~Ls~N~i~~i~~~~----   95 (635)
T 4g8a_A           25 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----   95 (635)
T ss_dssp             CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTT----
T ss_pred             CCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCC-----HHHHhCCCCCCEEECCCCcCCCcChhH----
Confidence            456542    477864         2356899999999987553     345667777777777777776544444    


Q ss_pred             cCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       120 ~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      |.++++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus        96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~  138 (635)
T 4g8a_A           96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS  138 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC
T ss_pred             hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC
Confidence            6677777777777777765555566677777777777776664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.49  E-value=8.7e-14  Score=104.19  Aligned_cols=91  Identities=24%  Similarity=0.291  Sum_probs=45.1

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc--------------------ccccCCCCCC
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG--------------------IERLSRLSNL  126 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~--------------------~~~~~~l~~L  126 (167)
                      ..++.|+++++.+..+.     +..+..+++|++|++++|.+++..|...                    ...+..+++|
T Consensus        35 ~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  109 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS-----DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL  109 (251)
T ss_dssp             TTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEccCCCcCccC-----HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence            34667777777665432     2234444445555555555444333320                    0014455555


Q ss_pred             CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      ++|++++|++++..+..|..+++|++|+|++|++++
T Consensus       110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A          110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence            555555555554444444555555555555555553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.48  E-value=1.3e-13  Score=113.24  Aligned_cols=100  Identities=28%  Similarity=0.298  Sum_probs=84.2

Q ss_pred             CCcceeeEEEeCC-----------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccC
Q 043924           53 DCCQWERVECSNT-----------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS  121 (167)
Q Consensus        53 ~~c~w~gv~C~~~-----------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~  121 (167)
                      -.|.|.|+ |+..           ..+++.|++++|.++.+.     +..+..+++|++|++++|.+++..|..    |.
T Consensus         2 ~~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~   71 (549)
T 2z81_A            2 LSCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDA----FY   71 (549)
T ss_dssp             CEECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTT----TT
T ss_pred             ccCCCCce-EECCCCccccccccCCCCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhh----cc
Confidence            46899998 8741           247899999999887542     456788999999999999999877776    89


Q ss_pred             CCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          122 RLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       122 ~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      .+++|++|++++|++++..|..++++++|++|++++|++++
T Consensus        72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence            99999999999999998888889999999999999999885

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.6e-13  Score=97.83  Aligned_cols=99  Identities=25%  Similarity=0.379  Sum_probs=79.7

Q ss_pred             ceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCC
Q 043924           56 QWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNL  126 (167)
Q Consensus        56 ~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L  126 (167)
                      ....+.|+.         ....++.|+|++|.+..+.     +..|..+++|++|+|++|.+++..+..    |..+++|
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L   83 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE-----PGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQL   83 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred             CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccC-----HHHhcCCcCCCEEECCCCCCCccChhH----hCCcchh
Confidence            345566753         1356788999999887543     456888999999999999999744444    7899999


Q ss_pred             CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924          127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~  163 (167)
                      ++|+|++|+|++..+..|.++++|++|+|++|+++..
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999999999976666699999999999999999854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.48  E-value=1.3e-13  Score=107.54  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             cceeeEEEeCC-----------CCCEEEEEcCC-CCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCC
Q 043924           55 CQWERVECSNT-----------TGRVIQLDLSF-IGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSR  122 (167)
Q Consensus        55 c~w~gv~C~~~-----------~~~v~~L~L~~-~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~  122 (167)
                      |.|..|.|...           ..+++.|+|++ |.+..+.     +..|..+++|++|+|++|.|++..|..    |.+
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~   78 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDA----FHF   78 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSSCCCEECTTG----GGS
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-----hhHhccccCCCEEECCCCccceeCHHH----hcC
Confidence            88888998752           12366777774 6665432     344666777777777777777766655    677


Q ss_pred             CCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          123 LSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       123 l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +++|++|+|++|+|++..|..+..++ |+.|+|.+|.|..
T Consensus        79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            77777777777777755444455554 7777777777664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.47  E-value=1.1e-13  Score=104.76  Aligned_cols=64  Identities=27%  Similarity=0.307  Sum_probs=33.1

Q ss_pred             CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      .+++|++|++++|.+++..+..    +..+++|++|++++|++++..|..|..+++|++|++++|+++
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGV----FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTT----TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCcCCcCCHhH----cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            3444444444444444322222    455555555555555555544555555666666666666555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.47  E-value=6.6e-14  Score=112.59  Aligned_cols=110  Identities=25%  Similarity=0.338  Sum_probs=74.7

Q ss_pred             CCcceee--EEEeCC--------CCCEEEEEcCCCCCCCcccc--------------------ccCCccccCCCCccEEE
Q 043924           53 DCCQWER--VECSNT--------TGRVIQLDLSFIGNWDLKER--------------------YLNASLFTPFQQLESLY  102 (167)
Q Consensus        53 ~~c~w~g--v~C~~~--------~~~v~~L~L~~~~l~~l~~~--------------------~l~~~~~~~l~~L~~L~  102 (167)
                      ..|.|.+  |.|+..        ..+++.|+|++|.+..+...                    .+.+..|..+++|++|+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            5677766  888752        25689999999987643210                    11123456677777777


Q ss_pred             cCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHh--hhcCCCCCEEECcCCcceecCCC
Q 043924          103 LEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS--VAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       103 Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~--l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +++|.+++..|..    +..+++|++|++++|++++.+|..  ++++++|++|++++|++++..|.
T Consensus        86 Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (455)
T 3v47_A           86 LDYNQFLQLETGA----FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA  147 (455)
T ss_dssp             CTTCTTCEECTTT----TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred             CCCCccCccChhh----ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence            7777777666665    777777777777777777766655  77777777777777777766553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=101.19  Aligned_cols=89  Identities=22%  Similarity=0.286  Sum_probs=74.2

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      +++.|+|++|.+..+     .+..|..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..|..+
T Consensus        82 ~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l  152 (220)
T 2v70_A           82 GVNEILLTSNRLENV-----QHKMFKGLESLKTLMLRSNRITCVGNDS----FIGLSSVRLLSLYDNQITTVAPGAFDTL  152 (220)
T ss_dssp             TCCEEECCSSCCCCC-----CGGGGTTCSSCCEEECTTSCCCCBCTTS----STTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred             CCCEEECCCCccCcc-----CHhHhcCCcCCCEEECCCCcCCeECHhH----cCCCccCCEEECCCCcCCEECHHHhcCC
Confidence            344555555554432     2445788999999999999999887877    9999999999999999999889999999


Q ss_pred             CCCCEEECcCCcceecCC
Q 043924          148 SSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG~iP  165 (167)
                      ++|++|++++|.+++..+
T Consensus       153 ~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          153 HSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTCCEEECCSCCEECSGG
T ss_pred             CCCCEEEecCcCCcCCCc
Confidence            999999999999997654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.45  E-value=3.8e-13  Score=105.24  Aligned_cols=103  Identities=32%  Similarity=0.312  Sum_probs=84.1

Q ss_pred             CCcceeeEEEeC-----------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccC
Q 043924           53 DCCQWERVECSN-----------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS  121 (167)
Q Consensus        53 ~~c~w~gv~C~~-----------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~  121 (167)
                      .+|.|.|+ |+.           ...+++.|+++++.++.+.     +..+..+++|++|++++|.+++..|..    +.
T Consensus        28 ~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~   97 (353)
T 2z80_A           28 LSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDS----FS   97 (353)
T ss_dssp             CEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TT
T ss_pred             CCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccC-----HHHhccCCCCCEEECCCCccCccCHhh----cC
Confidence            78899887 653           1246889999999887543     446788999999999999999877776    89


Q ss_pred             CCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924          122 RLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       122 ~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .+++|++|++++|++++..+..++++++|++|++++|+++ .+|.
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  141 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE  141 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred             CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence            9999999999999999766666899999999999999988 4543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.43  E-value=1.9e-13  Score=106.39  Aligned_cols=72  Identities=17%  Similarity=0.038  Sum_probs=65.2

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .+..+++|++|++++|.+.+.+|..    ++.+++|++|++++|++.+.+|..++++++|++|+|++|++.|.+|+
T Consensus       224 ~l~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          224 AIHHLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             GGGGCTTCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             hhccCCCCCEEECcCCcchhhhHHH----hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            4677889999999999999888887    89999999999999999999999999999999999999999999986

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.41  E-value=9.8e-14  Score=107.27  Aligned_cols=74  Identities=27%  Similarity=0.425  Sum_probs=69.4

Q ss_pred             CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC-CCCEEECcCCcceecCCC
Q 043924           89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS-SLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~-~L~~L~L~~N~lsG~iP~  166 (167)
                      +..+..+++|++|++++|.+++.+|..    +..+++|++|++++|+++|.+|..+++++ +|++|++++|+++|.+|.
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~  192 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred             CHHHhCCCCCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence            445788999999999999999999988    99999999999999999999999999998 999999999999999885

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.41  E-value=5.4e-13  Score=94.75  Aligned_cols=91  Identities=23%  Similarity=0.300  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ..+++.|++++|.++.+.     +..+..+++|++|++++|.+++..+..    +..+++|++|++++|++++..+..+.
T Consensus        51 l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~  121 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLP-----DGVFDKLTKLTILYLHENKLQSLPNGV----FDKLTQLKELALDTNQLKSVPDGIFD  121 (177)
T ss_dssp             CTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             cccccEEECCCCcceEeC-----hhHccCCCccCEEECCCCCccccCHHH----hhCCcccCEEECcCCcceEeCHHHhc
Confidence            357899999999887543     455788999999999999999766555    78999999999999999976666678


Q ss_pred             cCCCCCEEECcCCcceecCC
Q 043924          146 HLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .+++|++|++++|+++|.+|
T Consensus       122 ~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          122 RLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TCTTCCEEECCSSCBCCCHH
T ss_pred             CCcccCEEEecCCCeeccCc
Confidence            99999999999999998765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.40  E-value=1.1e-12  Score=96.66  Aligned_cols=87  Identities=23%  Similarity=0.230  Sum_probs=71.1

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      +++.|+|++|.++.+     ++..|..+++|++|+|++|.+++..|..    |..+++|++|+|++|++++..+..|..+
T Consensus        81 ~L~~L~Ls~N~l~~l-----~~~~f~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l  151 (220)
T 2v9t_B           81 SLNSLVLYGNKITEL-----PKSLFEGLFSLQLLLLNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAKGTFSPL  151 (220)
T ss_dssp             SCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             CCCEEECCCCcCCcc-----CHhHccCCCCCCEEECCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence            445555555555432     2445778899999999999999877776    9999999999999999998888889999


Q ss_pred             CCCCEEECcCCcceec
Q 043924          148 SSLTSLYLYSNRLEGN  163 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG~  163 (167)
                      ++|++|+|++|.++..
T Consensus       152 ~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          152 RAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTCCEEECCSSCEECS
T ss_pred             CCCCEEEeCCCCcCCC
Confidence            9999999999999753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=1.8e-12  Score=93.77  Aligned_cols=89  Identities=25%  Similarity=0.256  Sum_probs=78.1

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      -.+++.|+|++|.++.+.     +..|..+++|++|+|++|.+++..|..    |..+++|++|+|++|++++..+..|.
T Consensus        53 l~~L~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~~~~~~~  123 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLS-----NQSFSNMTQLLTLILSYNRLRCIPPRT----FDGLKSLRLLSLHGNDISVVPEGAFN  123 (193)
T ss_dssp             CTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             ccCCCEEECCCCcCCEeC-----HhHccCCCCCCEEECCCCccCEeCHHH----hCCCCCCCEEECCCCCCCeeChhhhh
Confidence            357899999999987543     456888999999999999999877766    99999999999999999976666799


Q ss_pred             cCCCCCEEECcCCcceec
Q 043924          146 HLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~  163 (167)
                      .+++|++|++++|.+.+.
T Consensus       124 ~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          124 DLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TCTTCCEEECCSSCEECS
T ss_pred             cCccccEEEeCCCCeecC
Confidence            999999999999999764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.37  E-value=7.9e-13  Score=98.10  Aligned_cols=96  Identities=13%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             EEEeC------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCc-eeeecCcccccccCCCCCCCEEeCc
Q 043924           60 VECSN------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNN-IAGCVENEGIERLSRLSNLKMLDLS  132 (167)
Q Consensus        60 v~C~~------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~-l~g~ip~~~~~~~~~l~~L~~L~ls  132 (167)
                      |.|..      ....++.|+++++.++.+.     +..+..+++|++|++++|. +++..+..    |..+++|++|+++
T Consensus        18 v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~-----~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~   88 (239)
T 2xwt_C           18 VTCKDIQRIPSLPPSTQTLKLIETHLRTIP-----SHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIR   88 (239)
T ss_dssp             EEECSCSSCCCCCTTCCEEEEESCCCSEEC-----TTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEE
T ss_pred             eEccCccccCCCCCcccEEEEeCCcceEEC-----HHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECC
Confidence            55864      2347889999999887543     3457778889999999886 76444444    7888888888888


Q ss_pred             C-CcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924          133 E-NLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       133 ~-N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      + |++++..+..|.++++|++|++++|++++ +|
T Consensus        89 ~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp  121 (239)
T 2xwt_C           89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FP  121 (239)
T ss_dssp             EETTCCEECTTSEECCTTCCEEEEEEECCCS-CC
T ss_pred             CCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cc
Confidence            8 88886666778888888888888888875 55

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.37  E-value=2.2e-12  Score=104.47  Aligned_cols=100  Identities=27%  Similarity=0.269  Sum_probs=64.0

Q ss_pred             eeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924           57 WERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK  127 (167)
Q Consensus        57 w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~  127 (167)
                      |..|.|..         ....++.|+|++|.+..+.     +..|..+++|++|+|++|.+++..|..    |.++++|+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~   83 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLR   83 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC-----HhHccCCCCCCEEECCCCccCEeChhh----hhCCccCC
Confidence            67889974         2346789999999886543     344566667777777777666655555    66666666


Q ss_pred             EEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924          128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +|+|++|++++..+..|.++++|++|+|++|++++..|
T Consensus        84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  121 (477)
T 2id5_A           84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD  121 (477)
T ss_dssp             EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred             EEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence            66666666664444445666666666666666655443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.37  E-value=9.8e-13  Score=90.81  Aligned_cols=88  Identities=22%  Similarity=0.261  Sum_probs=75.7

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch-hhHhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS-ILSSV  144 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~-iP~~l  144 (167)
                      -.+++.|++++|.+..+       ..+..+++|++|++++|.+++.+|..    +..+++|++|++++|++++. .|..+
T Consensus        41 l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ls~N~i~~~~~~~~~  109 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCPNLTHLNLSGNKIKDLSTIEPL  109 (149)
T ss_dssp             CTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred             cCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCCcccchHHHH----hhhCCCCCEEECCCCcCCChHHHHHH
Confidence            45789999999988754       34778999999999999999877776    77899999999999999973 55889


Q ss_pred             hcCCCCCEEECcCCcceecC
Q 043924          145 AHLSSLTSLYLYSNRLEGNI  164 (167)
Q Consensus       145 ~~l~~L~~L~L~~N~lsG~i  164 (167)
                      ..+++|++|++++|++++..
T Consensus       110 ~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A          110 KKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             GGCTTCCEEECTTCGGGGST
T ss_pred             hhCCCCCEEeCcCCcccchH
Confidence            99999999999999998654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.37  E-value=2e-12  Score=107.53  Aligned_cols=100  Identities=25%  Similarity=0.262  Sum_probs=54.6

Q ss_pred             CCcce----eeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccc
Q 043924           53 DCCQW----ERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER  119 (167)
Q Consensus        53 ~~c~w----~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~  119 (167)
                      +||.+    ..+.|..         ...+++.|++++|.+..+.     +..|..+++|++|++++|.+++..|..    
T Consensus         5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~i~~~~----   75 (606)
T 3vq2_A            5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILK-----SYSFSNFSELQWLDLSRCEIETIEDKA----   75 (606)
T ss_dssp             -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTT----
T ss_pred             CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeC-----hhhccCCccCcEEeCCCCcccccCHHH----
Confidence            56765    3577753         2356889999999876432     223445555555555555555444443    


Q ss_pred             cCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       120 ~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      |.++++|++|++++|++++..|..|+++++|++|++++|+++
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  117 (606)
T 3vq2_A           76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA  117 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc
Confidence            455555555555555555444444555555555555554444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.37  E-value=2e-12  Score=101.76  Aligned_cols=104  Identities=25%  Similarity=0.322  Sum_probs=59.3

Q ss_pred             CcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccc--------------------cCCccccCCCCccEEEcC
Q 043924           54 CCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERY--------------------LNASLFTPFQQLESLYLE  104 (167)
Q Consensus        54 ~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~--------------------l~~~~~~~l~~L~~L~Ls  104 (167)
                      .|.+..+.|..         ....++.|+|++|.++.+....                    +.+..|..+++|++|+|+
T Consensus        17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            35677888864         1344678999988876443210                    111234445555555555


Q ss_pred             CCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          105 YNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       105 ~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +|.+++..+..    |..+++|++|+|++|++++..|..|.++++|++|+|++|+|+
T Consensus        97 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           97 SNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            55555433333    555566666666666666555555666666666666666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.37  E-value=2.5e-12  Score=93.46  Aligned_cols=90  Identities=23%  Similarity=0.272  Sum_probs=74.9

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.|++++|.++.+     .+..+..+++|++|++++|.+++..+..    +..+++|++|++++|++++..+..+.+
T Consensus        76 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSL-----PNGVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             TTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             CCcCEEECCCCcCCcc-----CHhHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCHHHhcc
Confidence            4567777777766543     2445778999999999999999765555    789999999999999999877777899


Q ss_pred             CCCCCEEECcCCcceecCC
Q 043924          147 LSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG~iP  165 (167)
                      +++|++|++++|.++|..|
T Consensus       147 l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CTTCCEEECCSCCBCCCTT
T ss_pred             CCCccEEEecCCCeecCCC
Confidence            9999999999999988776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=4e-12  Score=90.08  Aligned_cols=84  Identities=25%  Similarity=0.196  Sum_probs=72.2

Q ss_pred             EEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCC
Q 043924           70 IQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS  149 (167)
Q Consensus        70 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~  149 (167)
                      +.++++++.+..+..      .+  .+.|++|++++|.+++..|..    |..+++|++|+|++|++++..|..|.++++
T Consensus        12 ~~l~~s~n~l~~ip~------~~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           12 TTVDCSGKSLASVPT------GI--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TEEECTTSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEeCCCCcCccCc------cC--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            478999999876532      12  378999999999999877877    999999999999999999877777899999


Q ss_pred             CCEEECcCCcceecCC
Q 043924          150 LTSLYLYSNRLEGNID  165 (167)
Q Consensus       150 L~~L~L~~N~lsG~iP  165 (167)
                      |++|+|++|+|++..|
T Consensus        80 L~~L~L~~N~l~~~~~   95 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPR   95 (170)
T ss_dssp             CCEEECCSSCCCCCCT
T ss_pred             CCEEECCCCccCEeCH
Confidence            9999999999996443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=3.4e-12  Score=99.52  Aligned_cols=84  Identities=19%  Similarity=0.172  Sum_probs=73.2

Q ss_pred             EEEcCCC-CCCCccccccCCccccCCCCccEEEcCC-CceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC
Q 043924           71 QLDLSFI-GNWDLKERYLNASLFTPFQQLESLYLEY-NNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS  148 (167)
Q Consensus        71 ~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~-n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~  148 (167)
                      .++++++ ++..+      |. +..+++|++|+|++ |.+++..|..    |..+++|++|+|++|+|++..|..|.+++
T Consensus        12 ~v~~~~~n~l~~i------p~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           12 GLRCTRDGALDSL------HH-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             CEECCSSCCCTTT------TT-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             EEEcCCCCCCCcc------CC-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCc
Confidence            4588887 78765      34 77899999999996 9999776666    99999999999999999999999999999


Q ss_pred             CCCEEECcCCcceecCCC
Q 043924          149 SLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       149 ~L~~L~L~~N~lsG~iP~  166 (167)
                      +|++|+|++|+|++ +|+
T Consensus        81 ~L~~L~l~~N~l~~-~~~   97 (347)
T 2ifg_A           81 RLSRLNLSFNALES-LSW   97 (347)
T ss_dssp             CCCEEECCSSCCSC-CCS
T ss_pred             CCCEEeCCCCccce-eCH
Confidence            99999999999995 443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.35  E-value=3.9e-12  Score=94.15  Aligned_cols=89  Identities=25%  Similarity=0.354  Sum_probs=73.6

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.|+|++|.++.+     .+..+..+++|++|++++|.++ .+|..    +..+++|++|++++|++++..+..+..
T Consensus        88 ~~L~~L~Ls~N~l~~l-----~~~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~  157 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVL-----PSAVFDRLVHLKELFMCCNKLT-ELPRG----IERLTHLTHLALDQNQLKSIPHGAFDR  157 (229)
T ss_dssp             TTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCC-SCCTT----GGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CCcCEEECCCCcCCcc-----ChhHhCcchhhCeEeccCCccc-ccCcc----cccCCCCCEEECCCCcCCccCHHHHhC
Confidence            3455666666655533     2445778999999999999998 78887    899999999999999999777778999


Q ss_pred             CCCCCEEECcCCcceecCC
Q 043924          147 LSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG~iP  165 (167)
                      +++|++|++++|.+++..+
T Consensus       158 l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CTTCCEEECTTSCBCTTBG
T ss_pred             CCCCCEEEeeCCCccCCcc
Confidence            9999999999999987654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=2.5e-12  Score=107.16  Aligned_cols=88  Identities=25%  Similarity=0.238  Sum_probs=77.7

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchh-hHhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSI-LSSV  144 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~i-P~~l  144 (167)
                      -.+++.|+|++|.+..+      +..++.+++|++|+|++|.+++ +| .    ++.+++|++|+|++|++++.+ |..+
T Consensus       462 l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          462 LLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDNALEN-VD-G----VANLPRLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             GTTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred             cccCcEeecCccccccc------chhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCcEEECCCCCCCCCCCcHHH
Confidence            34688999999988755      3467889999999999999997 67 5    899999999999999999877 9999


Q ss_pred             hcCCCCCEEECcCCcceecCC
Q 043924          145 AHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       145 ~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +.+++|+.|+|++|++++..|
T Consensus       530 ~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          530 VSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             GGCTTCCEEECTTSGGGGSSS
T ss_pred             hcCCCCCEEEecCCcCCCCcc
Confidence            999999999999999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.34  E-value=3.7e-12  Score=96.39  Aligned_cols=70  Identities=26%  Similarity=0.356  Sum_probs=49.0

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +..+++|++|++++|.+++..+..    +..+++|++|++++|++++..|..+.++++|++|++++|.++|.+|
T Consensus       153 ~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          153 FDKLTNLTELDLSYNQLQSLPEGV----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hccCccCCEEECCCCCcCccCHHH----hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            456667777777777776544443    6677777777777777777666667777777777777777776665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.34  E-value=4.6e-12  Score=94.73  Aligned_cols=66  Identities=30%  Similarity=0.450  Sum_probs=30.8

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +..+++|++|++++|.+++..+..    +..+++|++|++++|++++..+..|..+++|++|+|++|+++
T Consensus       103 ~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          103 FDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             hcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            344455555555555554322222    344445555555555554433334444445555555555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.33  E-value=3.4e-12  Score=88.05  Aligned_cols=85  Identities=26%  Similarity=0.303  Sum_probs=74.4

Q ss_pred             CCCEEEEEcCCCCCC--CccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHh
Q 043924           66 TGRVIQLDLSFIGNW--DLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS  143 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~--~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~  143 (167)
                      ..+++.++++++.+.  .+      +..+..+++|++|++++|.+++.  ..    +..+++|++|++++|++++.+|..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKL------EGLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVL   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBC------CSCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHH
T ss_pred             CccCeEEEccCCcCChhHH------HHHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHH
Confidence            356889999999876  33      34567899999999999999875  44    899999999999999999889999


Q ss_pred             hhcCCCCCEEECcCCccee
Q 043924          144 VAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       144 l~~l~~L~~L~L~~N~lsG  162 (167)
                      +.++++|++|++++|++++
T Consensus        84 ~~~l~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKD  102 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCS
T ss_pred             hhhCCCCCEEECCCCcCCC
Confidence            9999999999999999986

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=6.3e-12  Score=89.45  Aligned_cols=82  Identities=21%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             EEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCC
Q 043924           70 IQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS  149 (167)
Q Consensus        70 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~  149 (167)
                      +.++++++.+..++.      .+  .+.|++|++++|.+++..|..    |..+++|++|+|++|+|++..+..|.++++
T Consensus        15 ~~l~~~~n~l~~iP~------~~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA------GI--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cEEEeCCCCCCccCC------Cc--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            578999998876532      22  378999999999999877877    999999999999999999866666899999


Q ss_pred             CCEEECcCCcceec
Q 043924          150 LTSLYLYSNRLEGN  163 (167)
Q Consensus       150 L~~L~L~~N~lsG~  163 (167)
                      |++|+|++|+|++-
T Consensus        83 L~~L~L~~N~l~~l   96 (174)
T 2r9u_A           83 LTQLDLNDNHLKSI   96 (174)
T ss_dssp             CCEEECCSSCCCCC
T ss_pred             hhEEECCCCcccee
Confidence            99999999999954

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.32  E-value=8.8e-12  Score=94.23  Aligned_cols=92  Identities=24%  Similarity=0.235  Sum_probs=45.9

Q ss_pred             CCEEEEEcCCCCCCCcccc-------------------ccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924           67 GRVIQLDLSFIGNWDLKER-------------------YLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK  127 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~  127 (167)
                      ..++.|+++++.+..+...                   .+.+..+..+++|++|++++|.+++..+..    +..+++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~  103 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQ  103 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh----hcCCcccc
Confidence            3477788888776543210                   011122344445555555555544433333    45555555


Q ss_pred             EEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|++++|++++..+..++++++|++|++++|++++
T Consensus       104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             EEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            55555555554433345555555555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.32  E-value=8.1e-12  Score=100.83  Aligned_cols=97  Identities=25%  Similarity=0.312  Sum_probs=78.2

Q ss_pred             eeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924           57 WERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK  127 (167)
Q Consensus        57 w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~  127 (167)
                      |..|.|..         ...+++.|+|++|.+..+.     +..|..+++|++|++++|.+++..|..    |..+++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ-----ADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceEC-----HHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence            56788874         1356889999999887543     456778899999999999998776666    88888999


Q ss_pred             EEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|+|++|++++..+..|..+++|++|+|++|++++
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            99999999887666678888889999999888874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=5.3e-13  Score=114.07  Aligned_cols=66  Identities=29%  Similarity=0.482  Sum_probs=46.6

Q ss_pred             CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .+++|++|+|++|.++ .+|..    |+.+++|++|+|++|+|+ .+|..|++|++|++|+|++|.|+ .||.
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~  310 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW  310 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS
T ss_pred             CCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh
Confidence            4666666677777666 56655    677777777777777777 66777777777777777777775 6664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.31  E-value=5.2e-12  Score=101.48  Aligned_cols=72  Identities=28%  Similarity=0.382  Sum_probs=55.7

Q ss_pred             ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ..+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQS----FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hHhcCcccCCEEECCCCcccccChhh----ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            34566777888888888887766666    7788888888888888886555667788888888888888888777

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.30  E-value=9.6e-12  Score=94.11  Aligned_cols=70  Identities=30%  Similarity=0.390  Sum_probs=47.9

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +..+++|++|++++|.+++..+..    +..+++|++|++++|++++..|..++.+++|++|++++|++++..|
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             hccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            556667777777777766544443    5677777777777777776666666777777777777777776444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.29  E-value=1.9e-11  Score=92.78  Aligned_cols=92  Identities=22%  Similarity=0.179  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCCCCCcccc-------------------ccCCccccCCCCccEEEcCCCc-eeeecCcccccccCCCCCC
Q 043924           67 GRVIQLDLSFIGNWDLKER-------------------YLNASLFTPFQQLESLYLEYNN-IAGCVENEGIERLSRLSNL  126 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls~n~-l~g~ip~~~~~~~~~l~~L  126 (167)
                      ..++.|+++++.+..+...                   .+.+..+..+++|++|++++|. +....|..    +..+++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~----~~~l~~L  107 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT----FHGLGRL  107 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT----TTTCTTC
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH----hcCCcCC
Confidence            4577888888776543210                   0112234444555555555554 33322333    5555555


Q ss_pred             CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      ++|++++|++++..|..+.++++|++|++++|++++
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  143 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA  143 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence            555555555555555555555666666666665553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.29  E-value=6.4e-12  Score=104.19  Aligned_cols=74  Identities=23%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +..+..+++|++|+|++|.+++..|..    |.++++|++|+|++|++++..|..|.++++|++|+|++|+|++..|.
T Consensus       487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~----f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             chhhhhccccCEEECCCCccCCcChHH----HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            345667777888888888887766666    77778888888888888777777777788888888888888776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.29  E-value=4.6e-12  Score=89.09  Aligned_cols=86  Identities=27%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch-hhHhhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS-ILSSVA  145 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~-iP~~l~  145 (167)
                      .+++.|++++|.+..+       ..+..+++|++|++++|.+++.+|..    +..+++|++|++++|++++. .+..+.
T Consensus        49 ~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~  117 (168)
T 2ell_A           49 VNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLK  117 (168)
T ss_dssp             GGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred             CCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHh
Confidence            4678888888887654       34677899999999999998877765    67789999999999999864 336788


Q ss_pred             cCCCCCEEECcCCcceec
Q 043924          146 HLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~  163 (167)
                      .+++|++|++++|++++.
T Consensus       118 ~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          118 KLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             SCSCCCEEECCSSGGGTS
T ss_pred             cCCCCCEEEeeCCcCcch
Confidence            999999999999999854

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.29  E-value=3.7e-12  Score=97.58  Aligned_cols=104  Identities=18%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             CCcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceee-------------
Q 043924           53 DCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAG-------------  110 (167)
Q Consensus        53 ~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g-------------  110 (167)
                      ..|.|.+|.|+.         ...+++.|+++++.+..+.     ...+..+++|++|++++|.++.             
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~   79 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS   79 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccC-----HhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence            347899999985         1347899999999886543     2334455555555555555542             


Q ss_pred             ------------ecCcccccccCCCCCCCEEeCcCCcCCchhh-HhhhcCCCCCEEECcCCcceecCC
Q 043924          111 ------------CVENEGIERLSRLSNLKMLDLSENLFNNSIL-SSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       111 ------------~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                                  .+|..    +..+++|++|++++|++++..+ ..+.++++|++|++++|++++.+|
T Consensus        80 L~~L~Ls~n~i~~l~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  143 (306)
T 2z66_A           80 LKYLDLSFNGVITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  143 (306)
T ss_dssp             CCEEECCSCSEEEEEEE----EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred             cCEEECCCCccccChhh----cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence                        23333    6667777777777777765443 456777777777777777776554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.29  E-value=8e-12  Score=103.85  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=56.8

Q ss_pred             eeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCE
Q 043924           58 ERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKM  128 (167)
Q Consensus        58 ~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~  128 (167)
                      ..+.|..         .+..++.|++++|.++.+.     +..|..+++|++|++++|.+.+..|..    |.++++|++
T Consensus        15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~   85 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQ-----NTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDT   85 (606)
T ss_dssp             TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEEC-----TTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCE
T ss_pred             ceEECCCCCcccCcCCCCCcCcEEEccCCccCcCC-----hhHhccCccceEEECCCCccceeChhh----ccCccccCe
Confidence            4477753         2356889999999886442     334555666666666666665554554    555555555


Q ss_pred             EeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          129 LDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       129 L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      |++++|++++..|..|+++++|++|++++|++++
T Consensus        86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             EECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred             eeCCCCcccccChhhhcccccccEeeccccCccc
Confidence            5555555555555555555555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=8.1e-12  Score=98.26  Aligned_cols=88  Identities=31%  Similarity=0.325  Sum_probs=67.8

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhh---
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV---  144 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l---  144 (167)
                      +++.|+|++|.+..+     .+..|..+++|++|+|++|.+++..|..    |..+++|++|+|++|++++..+..|   
T Consensus        89 ~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~i~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~  159 (361)
T 2xot_A           89 NLRYLDLSSNHLHTL-----DEFLFSDLQALEVLLLYNNHIVVVDRNA----FEDMAQLQKLYLSQNQISRFPVELIKDG  159 (361)
T ss_dssp             TCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred             CCCEEECCCCcCCcC-----CHHHhCCCcCCCEEECCCCcccEECHHH----hCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence            344555555554422     2445788999999999999999877777    9999999999999999996444445   


Q ss_pred             hcCCCCCEEECcCCcceecCC
Q 043924          145 AHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       145 ~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ..+++|++|+|++|+|++ +|
T Consensus       160 ~~l~~L~~L~L~~N~l~~-l~  179 (361)
T 2xot_A          160 NKLPKLMLLDLSSNKLKK-LP  179 (361)
T ss_dssp             --CTTCCEEECCSSCCCC-CC
T ss_pred             ccCCcCCEEECCCCCCCc-cC
Confidence            679999999999999984 44

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.28  E-value=3.9e-12  Score=110.03  Aligned_cols=103  Identities=20%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             ceeeEEEeCCCCCEEEEEcCCCCCCCcccc--------------------ccCCccccCCCCccEEEcCCCceeeecCcc
Q 043924           56 QWERVECSNTTGRVIQLDLSFIGNWDLKER--------------------YLNASLFTPFQQLESLYLEYNNIAGCVENE  115 (167)
Q Consensus        56 ~w~gv~C~~~~~~v~~L~L~~~~l~~l~~~--------------------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~  115 (167)
                      .|..|-+  ...+++.|+|++|.++.+...                    .+.+..|.++++|++|+|++|.+.+..|..
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            4555554  256788899988887643210                    111333555666666666666666555555


Q ss_pred             cccccCCCCCCCEEeCcCCcCCchhhHh--hhcCCCCCEEECcCCcceecC
Q 043924          116 GIERLSRLSNLKMLDLSENLFNNSILSS--VAHLSSLTSLYLYSNRLEGNI  164 (167)
Q Consensus       116 ~~~~~~~l~~L~~L~ls~N~l~g~iP~~--l~~l~~L~~L~L~~N~lsG~i  164 (167)
                          |.++++|++|++++|++++.+|..  ++++++|++|+|++|++++..
T Consensus        93 ----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~  139 (844)
T 3j0a_A           93 ----FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY  139 (844)
T ss_dssp             ----SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC
T ss_pred             ----ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc
Confidence                666666666666666666554443  556666666666666665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.27  E-value=1.8e-11  Score=93.71  Aligned_cols=70  Identities=24%  Similarity=0.295  Sum_probs=38.5

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .|..+++|++|++++|.+++..+..    |..+++|++|++++|++++..+..|.++++|++|+|++|+++ .||
T Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip  188 (290)
T 1p9a_G          119 ALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             HHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence            3445555555555555555433332    455566666666666665433344555666666666666665 444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=1.4e-12  Score=111.54  Aligned_cols=94  Identities=23%  Similarity=0.269  Sum_probs=77.9

Q ss_pred             CCEEEEEcCCCCCCCcccc----------ccC-------CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEE
Q 043924           67 GRVIQLDLSFIGNWDLKER----------YLN-------ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKML  129 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~----------~l~-------~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L  129 (167)
                      ..++.|+|++|.+..+...          .+.       +..+..+++|++|+|++|.|+ .+|..    ++.+++|++|
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L  298 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE----LGSCFQLKYF  298 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS----GGGGTTCSEE
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh----hcCCCCCCEE
Confidence            5577888888877543321          111       244678999999999999999 78988    9999999999


Q ss_pred             eCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924          130 DLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       130 ~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +|++|+|+ .+|..|+++++|++|+|++|+|+|.+|.
T Consensus       299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            99999997 7898899999999999999999998763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.26  E-value=2e-11  Score=93.45  Aligned_cols=90  Identities=22%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ..+++.|++++|.+..+      +..+..+++|++|++++|.+++..|..    |..+++|++|++++|++++..+..|.
T Consensus        76 l~~L~~L~Ls~N~l~~l------~~~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~  145 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQSL------PLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLT  145 (290)
T ss_dssp             CTTCCEEECCSSCCSSC------CCCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCcCCEEECCCCcCCcC------chhhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhcc
Confidence            45678888888887654      234667888888888888888655555    88888888888888888876666778


Q ss_pred             cCCCCCEEECcCCcceecCCC
Q 043924          146 HLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .+++|++|+|++|+++ .+|.
T Consensus       146 ~l~~L~~L~L~~N~l~-~l~~  165 (290)
T 1p9a_G          146 PTPKLEKLSLANNNLT-ELPA  165 (290)
T ss_dssp             TCTTCCEEECTTSCCS-CCCT
T ss_pred             cccCCCEEECCCCcCC-ccCH
Confidence            8888888888888887 4443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.26  E-value=2.5e-11  Score=97.65  Aligned_cols=97  Identities=26%  Similarity=0.307  Sum_probs=72.7

Q ss_pred             eeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924           57 WERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK  127 (167)
Q Consensus        57 w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~  127 (167)
                      |..|.|..         ....++.|+|++|.+..+.     +..|..+++|++|+|++|.+++..+..    |.++++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIK-----VNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEEC-----TTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeC-----HHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCC
Confidence            56788874         1355788999999887543     355777888888888888887655555    77888888


Q ss_pred             EEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|+|++|++++..+..|..+++|++|+|++|++++
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            88888888886555667788888888888887774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.26  E-value=1.4e-11  Score=89.01  Aligned_cols=81  Identities=23%  Similarity=0.326  Sum_probs=41.5

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      +++.|+++++.+..+       +.+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..++++
T Consensus        67 ~L~~L~l~~n~~~~~-------~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l  135 (197)
T 4ezg_A           67 NIKDLTINNIHATNY-------NPISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTL  135 (197)
T ss_dssp             TCSEEEEESCCCSCC-------GGGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred             CCCEEEccCCCCCcc-------hhhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence            455555555544322       12344555555555555555444444    5555555555555555555455555555


Q ss_pred             CCCCEEECcCCc
Q 043924          148 SSLTSLYLYSNR  159 (167)
Q Consensus       148 ~~L~~L~L~~N~  159 (167)
                      ++|++|++++|+
T Consensus       136 ~~L~~L~L~~n~  147 (197)
T 4ezg_A          136 PKVNSIDLSYNG  147 (197)
T ss_dssp             SSCCEEECCSCT
T ss_pred             CCCCEEEccCCC
Confidence            555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.26  E-value=1.1e-11  Score=103.57  Aligned_cols=71  Identities=23%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .|..+++|++|++++|.+++..|..    |+.+++|++|++++|++++..+..|+++++|++|+|++|.+++..|
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            4556666666666666666544444    5666666666666666664444445666666666666666665444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=9.3e-12  Score=103.66  Aligned_cols=85  Identities=27%  Similarity=0.288  Sum_probs=76.2

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      .++.|+|++|.++.++      . +..+++|+.|++++|.++ .+|..    ++.+++|++|+|++|++++ +| .++++
T Consensus       442 ~L~~L~Ls~n~l~~lp------~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC------H-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSSCC------C-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             CceEEEecCCCCCCCc------C-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence            4778999999987652      3 788999999999999999 78887    9999999999999999997 77 79999


Q ss_pred             CCCCEEECcCCcceecC-CC
Q 043924          148 SSLTSLYLYSNRLEGNI-DV  166 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG~i-P~  166 (167)
                      ++|++|+|++|+|++.+ |.
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~  527 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQ  527 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTG
T ss_pred             CCCcEEECCCCCCCCCCCcH
Confidence            99999999999999876 64

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.25  E-value=7.8e-12  Score=87.91  Aligned_cols=90  Identities=24%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee-cCcccccccCCCCCCCEEeCcCCcCCchhh---H
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC-VENEGIERLSRLSNLKMLDLSENLFNNSIL---S  142 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~-ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP---~  142 (167)
                      .+++.|++++|.+...     .+..+..+++|++|++++|.+++. .+..    +..+++|++|++++|++++..+   .
T Consensus        71 ~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----l~~l~~L~~L~l~~N~l~~~~~~~~~  141 (168)
T 2ell_A           71 PKLKKLELSENRIFGG-----LDMLAEKLPNLTHLNLSGNKLKDISTLEP----LKKLECLKSLDLFNCEVTNLNDYRES  141 (168)
T ss_dssp             SSCCEEEEESCCCCSC-----CCHHHHHCTTCCEEECBSSSCCSSGGGGG----GSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred             CCCCEEECcCCcCchH-----HHHHHhhCCCCCEEeccCCccCcchhHHH----HhcCCCCCEEEeeCCcCcchHHHHHH
Confidence            4577888888877642     133355578888888888888753 2244    7888888888888888886554   4


Q ss_pred             hhhcCCCCCEEECcCCcceecCCC
Q 043924          143 SVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       143 ~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .+..+++|++|++++|.+. ++|.
T Consensus       142 ~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          142 VFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             HHTTCSSCCEETTEETTSC-BCCS
T ss_pred             HHHhCccCcEecCCCCChh-hccc
Confidence            6788888888888888776 4453

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.25  E-value=2.2e-11  Score=92.39  Aligned_cols=70  Identities=24%  Similarity=0.247  Sum_probs=48.4

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI  164 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~i  164 (167)
                      .+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             HhcCccccCEEECCCCcccccCHhH----ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            3555667777777777776665655    677777777777777777666666777777777777777776543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.24  E-value=6.7e-12  Score=99.28  Aligned_cols=72  Identities=22%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ..+..+++|++|++++|.+++..|..    +..+++|++|++++|+++...+..|.++++|++|++++|++++..|
T Consensus        87 ~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  158 (390)
T 3o6n_A           87 YAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  158 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             hhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence            34666777777777777777655555    6777777777777777774333345777777777777777775444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.23  E-value=9e-12  Score=104.83  Aligned_cols=96  Identities=11%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             CCCEEEEEcCCCCCCCc--cccc----------cCCcccc--CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeC
Q 043924           66 TGRVIQLDLSFIGNWDL--KERY----------LNASLFT--PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL  131 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l--~~~~----------l~~~~~~--~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~l  131 (167)
                      -.+++.|+|++|.++..  ....          .-+..++  ++++|++|++++|.+.|.+|..    ++++++|++|++
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L  280 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINV  280 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEEC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEEC
Confidence            45788999999988751  0000          0145566  8899999999999999989887    889999999999


Q ss_pred             cCCc-CCc-hhhHhhhcC------CCCCEEECcCCcceecCCC
Q 043924          132 SENL-FNN-SILSSVAHL------SSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       132 s~N~-l~g-~iP~~l~~l------~~L~~L~L~~N~lsG~iP~  166 (167)
                      ++|+ ++| .+|..++++      ++|++|++++|+++ .||.
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            9998 888 788877765      77777777777777 6664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.23  E-value=2.7e-11  Score=92.77  Aligned_cols=71  Identities=24%  Similarity=0.243  Sum_probs=45.3

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..+..+..+++|++|++++|++++.+|
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            3555666666666666666555554    6666666666666666665555556666666666666666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.22  E-value=2.8e-11  Score=85.88  Aligned_cols=85  Identities=25%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH--hhh
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS--SVA  145 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~--~l~  145 (167)
                      +++.|++++|.++.+       ..+..+++|++|++++|.+++. |+.   .+..+++|++|++++|+++ .+|.  .+.
T Consensus        43 ~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls~N~l~~~-~~~---~~~~l~~L~~L~L~~N~i~-~~~~~~~l~  110 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNNRICRI-GEG---LDQALPDLTELILTNNSLV-ELGDLDPLA  110 (176)
T ss_dssp             CCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSSCCCEE-CSC---HHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred             CCCEEECCCCCCCcc-------cccccCCCCCEEECCCCccccc-Ccc---hhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence            678888888877654       2467788999999999999854 443   1478889999999999996 5665  788


Q ss_pred             cCCCCCEEECcCCcceecCC
Q 043924          146 HLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .+++|++|++++|.++ .+|
T Consensus       111 ~l~~L~~L~l~~N~i~-~~~  129 (176)
T 1a9n_A          111 SLKSLTYLCILRNPVT-NKK  129 (176)
T ss_dssp             GCTTCCEEECCSSGGG-GST
T ss_pred             cCCCCCEEEecCCCCC-CcH
Confidence            8999999999999887 444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.21  E-value=4.4e-11  Score=84.83  Aligned_cols=86  Identities=22%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCC-CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPF-QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV  144 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l-~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l  144 (167)
                      ...++.|++++|.+..+.      . +..+ ++|++|++++|.+++.  ..    +..+++|++|++++|++++..|..+
T Consensus        18 ~~~L~~L~l~~n~l~~i~------~-~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIE------N-LGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             TTSCEEEECTTSCCCSCC------C-GGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             cCCceEEEeeCCCCchhH------H-hhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchh
Confidence            457899999999987552      2 3344 4999999999999975  34    8999999999999999997555556


Q ss_pred             hcCCCCCEEECcCCcceecCC
Q 043924          145 AHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       145 ~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ..+++|++|++++|+++ .+|
T Consensus        85 ~~l~~L~~L~L~~N~i~-~~~  104 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV-ELG  104 (176)
T ss_dssp             HHCTTCCEEECCSCCCC-CGG
T ss_pred             hcCCCCCEEECCCCcCC-cch
Confidence            99999999999999995 454

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.21  E-value=2.2e-11  Score=102.52  Aligned_cols=97  Identities=20%  Similarity=0.171  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCCCCCCCcccc-----------c--------cCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCC
Q 043924           66 TGRVIQLDLSFIGNWDLKER-----------Y--------LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNL  126 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~-----------~--------l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L  126 (167)
                      ..+++.|+++++.+..+...           .        +.+..+..+++|++|++++|.+++..+..    |.++++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L   99 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNL   99 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh----hccCCCC
Confidence            35688888888877644321           0        11223445566666666666666332223    6777777


Q ss_pred             CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924          127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      ++|++++|++++..|..|+++++|++|++++|++++..|.
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence            7777777777766666777777788888888777766553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.21  E-value=4.8e-11  Score=92.34  Aligned_cols=100  Identities=25%  Similarity=0.280  Sum_probs=67.7

Q ss_pred             CCcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCC
Q 043924           53 DCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL  123 (167)
Q Consensus        53 ~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l  123 (167)
                      ..|.|+.+.|..         ....++.|+++++.+..+.     +..+..+++|++|++++|.+++..|..    +..+
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l   99 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-----DGDFKNLKNLHTLILINNKISKISPGA----FAPL   99 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeC-----hhhhccCCCCCEEECCCCcCCeeCHHH----hcCC
Confidence            457899999974         1346788999999887543     334666777777777777777655655    6666


Q ss_pred             CCCCEEeCcCCcCC---------------------chhhHhhhcCCCCCEEECcCCcce
Q 043924          124 SNLKMLDLSENLFN---------------------NSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       124 ~~L~~L~ls~N~l~---------------------g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ++|++|++++|+++                     +..+..+.++++|++|++++|+++
T Consensus       100 ~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          100 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            66666666666554                     444455667777777777777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.21  E-value=1.7e-11  Score=95.92  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=83.8

Q ss_pred             cceeeEEEeCC---------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCC
Q 043924           55 CQWERVECSNT---------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSN  125 (167)
Q Consensus        55 c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~  125 (167)
                      |.++.|.|+..         ...++.|+|++|.++.+.     ...|.++++|++|+|++|.+.+.+|..   .|.++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~   80 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQ-----KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK   80 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEEC-----TTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTT
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcC-----HHHHcCCCCCCEEECcCCCCCCccChh---Hhhcchh
Confidence            67889999741         246889999999987553     456889999999999999998888864   2788888


Q ss_pred             CCE-EeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924          126 LKM-LDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       126 L~~-L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~  163 (167)
                      ++. +.++.|+++...|..|..+++|++|++++|++++.
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred             hhhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence            765 66778999987788899999999999999999854

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.20  E-value=5.5e-11  Score=98.81  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhhc
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVAH  146 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~~  146 (167)
                      +++.|++++|.+..+     .+..|..+++|++|++++|.+++..|..    ++.+++|++|++++|++++ .+|..+++
T Consensus        81 ~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~lp~~~~~  151 (606)
T 3vq2_A           81 HLSNLILTGNPIQSF-----SPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAYFSN  151 (606)
T ss_dssp             TCCEEECTTCCCCCC-----CTTSSTTCTTCCEEECTTSCCCCSSSSC----CTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred             hcCEeECCCCccccc-----ChhhcCCcccCCEEEccCCccccccccc----cCCCCCCCEEeCCCCcccceechHhHhh
Confidence            344444444444322     1344666777777777777776544444    7777788888888888775 56778888


Q ss_pred             CCCCCEEECcCCcceecCCC
Q 043924          147 LSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG~iP~  166 (167)
                      +++|++|++++|++++..|.
T Consensus       152 l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          152 LTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CTTCCEEECCSSCCCEECTT
T ss_pred             cCCCCEEEccCCcceecChh
Confidence            88888888888888775543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.20  E-value=6.4e-11  Score=89.39  Aligned_cols=86  Identities=24%  Similarity=0.289  Sum_probs=43.4

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      .++.|+++++.+..+.     +..|..+++|++|++++|.++...+..    +..+++|++|++++|++++..+..+.++
T Consensus        38 ~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l  108 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLP-----SKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNKLQALPIGVFDQL  108 (270)
T ss_dssp             TCSEEECCSSCCSCCC-----TTSSSSCTTCCEEECCSSCCSCCCTTT----TSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEECcCCCCCeeC-----HHHhcCCCCCCEEECCCCccCeeChhh----hcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence            4667777777665332     223444555555555555554222222    3445555555555555554444444555


Q ss_pred             CCCCEEECcCCccee
Q 043924          148 SSLTSLYLYSNRLEG  162 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG  162 (167)
                      ++|++|++++|++++
T Consensus       109 ~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A          109 VNLAELRLDRNQLKS  123 (270)
T ss_dssp             SSCCEEECCSSCCCC
T ss_pred             cCCCEEECCCCccCe
Confidence            555555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.19  E-value=6.5e-11  Score=91.76  Aligned_cols=100  Identities=26%  Similarity=0.302  Sum_probs=65.4

Q ss_pred             CCcceeeEEEeCC---------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCC
Q 043924           53 DCCQWERVECSNT---------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL  123 (167)
Q Consensus        53 ~~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l  123 (167)
                      ..|.|+.+.|...         ..+++.|+++++.+..+.     +..+..+++|++|++++|.+++..|..    +..+
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l  101 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-----KDDFKGLQHLYALVLVNNKISKIHEKA----FSPL  101 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECGGG----STTC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-----HhHhhCCCCCcEEECCCCccCccCHhH----hhCc
Confidence            3478999999741         246889999999886442     344666777777777777777655655    6666


Q ss_pred             CCCCEEeCcCCcCC---------------------chhhHhhhcCCCCCEEECcCCcce
Q 043924          124 SNLKMLDLSENLFN---------------------NSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       124 ~~L~~L~ls~N~l~---------------------g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ++|++|++++|+++                     +..+..+.++++|++|++++|+++
T Consensus       102 ~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          102 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             TTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            66666666666554                     333334566666666666666664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.19  E-value=4.6e-11  Score=90.23  Aligned_cols=90  Identities=22%  Similarity=0.242  Sum_probs=72.8

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVA  145 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~  145 (167)
                      .+++.|++++|.+..+     .+..+..+++|++|++++|.+.+..+..    +..+++|++|++++|++++ .+|..++
T Consensus        76 ~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~l~~~~~  146 (276)
T 2z62_A           76 SHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFS  146 (276)
T ss_dssp             TTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             cCCCEEECCCCccCcc-----ChhhhcCCccccEEECCCCCccccCchh----cccCCCCCEEECcCCccceecCchhhc
Confidence            3455666666655432     2355788999999999999998765555    8999999999999999987 4799999


Q ss_pred             cCCCCCEEECcCCcceecCC
Q 043924          146 HLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ++++|++|++++|++++..|
T Consensus       147 ~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             GCTTCCEEECCSSCCCEECG
T ss_pred             cCCCCCEEECCCCCCCcCCH
Confidence            99999999999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.17  E-value=2.8e-11  Score=98.93  Aligned_cols=63  Identities=37%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      |..+++|++|++++|.++ .+|.     . .+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus        65 ~~~l~~L~~L~Ls~N~l~-~lp~-----~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           65 FKFNQELEYLDLSHNKLV-KISC-----H-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             GTTCTTCCEEECCSSCCC-EEEC-----C-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             hhcccCCCEEecCCCcee-ecCc-----c-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            444444444444444444 2332     1 44455555555555544 34455555555555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.16  E-value=6.4e-11  Score=97.47  Aligned_cols=73  Identities=21%  Similarity=0.303  Sum_probs=58.1

Q ss_pred             ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      ..+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..+.++++|++|++++|+++|.+|.
T Consensus       464 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          464 DIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhhcccCCCEEECCCCccccCChhh----hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            34666778888888888888776766    78888888888888888877777788888888888888888888774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.15  E-value=6.4e-11  Score=85.43  Aligned_cols=87  Identities=16%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ...++.|++++|.+....     +..+..+++|++|++++|.+++..|..    +..+++|++|++++|++.+.+| .+.
T Consensus        87 l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~-~l~  156 (197)
T 4ezg_A           87 LSNLERLRIMGKDVTSDK-----IPNLSGLTSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM-PLK  156 (197)
T ss_dssp             CTTCCEEEEECTTCBGGG-----SCCCTTCTTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG-GGG
T ss_pred             CCCCCEEEeECCccCccc-----ChhhcCCCCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH-hhc
Confidence            356888999998876321     344677888999999999988777766    8888889999998888444566 588


Q ss_pred             cCCCCCEEECcCCccee
Q 043924          146 HLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG  162 (167)
                      .+++|++|++++|++++
T Consensus       157 ~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          157 TLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             GCSSCCEEECTTBCCCC
T ss_pred             CCCCCCEEECCCCCCcC
Confidence            88888888888888875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.15  E-value=1e-10  Score=94.07  Aligned_cols=67  Identities=22%  Similarity=0.257  Sum_probs=48.8

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +..+++|++|++++|.+++..|..    |..+++|++|++++|++++..|..|.++++|++|+|++|++++
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             cCCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            455667777777777777666665    7777777777777777777667777777777777777777774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.15  E-value=9.4e-11  Score=97.39  Aligned_cols=88  Identities=24%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      -.+++.|++++|.+..+     .+..|..+++|++|++++|.+++..|..    ++.+++|++|++++|++++..|..++
T Consensus        56 l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~  126 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWI-----HEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLH  126 (606)
T ss_dssp             CTTCSEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred             CccceEEECCCCcccee-----ChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhc
Confidence            35688899998887643     2456778888888888888888777776    88888888888888888876677788


Q ss_pred             cCCCCCEEECcCCccee
Q 043924          146 HLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG  162 (167)
                      ++++|++|++++|++++
T Consensus       127 ~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          127 NQKTLESLYLGSNHISS  143 (606)
T ss_dssp             TCTTCCEEECCSSCCCC
T ss_pred             cCCcccEEECCCCcccc
Confidence            88888888888888876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.15  E-value=2.8e-11  Score=105.20  Aligned_cols=96  Identities=13%  Similarity=0.106  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCCCCCCCc--cccc----------cCCcccc--CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeC
Q 043924           66 TGRVIQLDLSFIGNWDL--KERY----------LNASLFT--PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL  131 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l--~~~~----------l~~~~~~--~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~l  131 (167)
                      -.+++.|+|++|.++..  ....          .-+..++  ++++|++|+|++|.+.|.+|..    ++++++|++|++
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~L  522 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNI  522 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEEC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCEEEC
Confidence            35789999999998750  0000          0134455  8999999999999999999987    999999999999


Q ss_pred             cCCc-CCc-hhhHhhhcCC-------CCCEEECcCCcceecCCC
Q 043924          132 SENL-FNN-SILSSVAHLS-------SLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       132 s~N~-l~g-~iP~~l~~l~-------~L~~L~L~~N~lsG~iP~  166 (167)
                      ++|+ ++| .+|..+++++       +|++|+|++|+++ .||.
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence            9998 999 8998887766       9999999999999 8885

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.15  E-value=1e-10  Score=95.61  Aligned_cols=103  Identities=22%  Similarity=0.098  Sum_probs=59.7

Q ss_pred             ceeeEEEeCCCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccc------------------
Q 043924           56 QWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGI------------------  117 (167)
Q Consensus        56 ~w~gv~C~~~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~------------------  117 (167)
                      ...++.|.. ...++.|++++|.+..+.     +..+..+++|++|++++|.+++.+|....                  
T Consensus       110 ~l~~~~~~~-l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          110 NISRVSCSR-GQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CCCCEEECC-CSSCEEEECCSSCCCSGG-----GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCCCCccc-cCCCCEEECCCCCCCCCC-----chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            444555543 345777777777765432     22334455555555555555544443300                  


Q ss_pred             -cccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924          118 -ERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       118 -~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                       +....+++|++|++++|++++..| .+..+++|+.|+|++|++++ +|.
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~  231 (487)
T 3oja_A          184 VKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEK  231 (487)
T ss_dssp             EECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECT
T ss_pred             ccccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cch
Confidence             003346777777777777776433 47777888888888888875 453

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.15  E-value=1.1e-10  Score=94.18  Aligned_cols=67  Identities=27%  Similarity=0.257  Sum_probs=49.1

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +..+++|++|++++|.+++..|..    |..+++|++|++++|++++..|..|..+++|++|+|++|++++
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            455667777777777777666665    7777777777777777777767777777777777777777774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.15  E-value=1.7e-10  Score=94.91  Aligned_cols=71  Identities=23%  Similarity=0.272  Sum_probs=40.2

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee-cCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG-NID  165 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG-~iP  165 (167)
                      .|..+++|++|++++|.+++..|..    |..+++|++|++++|++++..+..++++++|++|++++|.+++ .+|
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp  142 (570)
T 2z63_A           71 AYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP  142 (570)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence            3445555555555555555444444    5566666666666666654333346666666666666666654 344

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.15  E-value=7.7e-11  Score=97.46  Aligned_cols=84  Identities=25%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.|++++|.+..+.     +..|..+++|++|++++|.+++..|..    |..+++|++|++++|+++ .+|..  .
T Consensus        52 ~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQNSISELR-----MPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--P  119 (562)
T ss_dssp             TTCCEEECCSSCCCCCC-----GGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred             CCcCEEECCCCCccccC-----hhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--c
Confidence            45777777777766442     234555666666666666666555554    555555555555555555 34443  4


Q ss_pred             CCCCCEEECcCCccee
Q 043924          147 LSSLTSLYLYSNRLEG  162 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG  162 (167)
                      +++|++|++++|++++
T Consensus       120 l~~L~~L~Ls~N~l~~  135 (562)
T 3a79_B          120 MASLRHLDLSFNDFDV  135 (562)
T ss_dssp             CTTCSEEECCSSCCSB
T ss_pred             cccCCEEECCCCCccc
Confidence            5555555555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.15  E-value=3.4e-11  Score=98.89  Aligned_cols=91  Identities=22%  Similarity=0.230  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSV  144 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l  144 (167)
                      -.+++.|++++|.+..+.     +..|..+++|++|++++|.+++..|..    ++.+++|++|++++|++++ .+|..+
T Consensus        49 l~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           49 CANLQVLILKSSRINTIE-----GDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             CTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             CCcccEEECCCCCcCccC-----hhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhh
Confidence            356778888888775432     344666677777777777776555544    6666667777777776665 345556


Q ss_pred             hcCCCCCEEECcCCcceecCC
Q 043924          145 AHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       145 ~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +++++|++|++++|++.+.+|
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEEC
T ss_pred             hccCCccEEECCCCccccccC
Confidence            666666666666666554554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.14  E-value=1.4e-10  Score=91.74  Aligned_cols=66  Identities=27%  Similarity=0.321  Sum_probs=36.0

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +..+++|++|++++|.++ .+|..   .+..+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus       113 ~~~l~~L~~L~L~~n~l~-~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLS-SLPRG---IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTT---TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             hcCCCCCCEEECCCCccC-cCCHH---HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            445555566666655555 23332   1355555566666665555555555555555666666555555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.13  E-value=7.3e-11  Score=96.43  Aligned_cols=88  Identities=23%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.|++++|.+..+.     +..+..+++|++|++++|.+++..|..    |..+++|++|++++|+++ .+|..  .
T Consensus        21 ~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQNYISELW-----TSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--P   88 (520)
T ss_dssp             TTCSEEECCSSCCCCCC-----HHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred             ccccEEECCCCcccccC-----hhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--c
Confidence            67899999999887543     345788999999999999999887877    999999999999999999 57776  8


Q ss_pred             CCCCCEEECcCCccee-cCCC
Q 043924          147 LSSLTSLYLYSNRLEG-NIDV  166 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG-~iP~  166 (167)
                      +++|++|++++|++++ .+|.
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~  109 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICK  109 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCG
T ss_pred             cCCccEEeccCCccccccchh
Confidence            9999999999999987 5664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.13  E-value=8.9e-11  Score=90.44  Aligned_cols=92  Identities=17%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeec--CcccccccCCCCCCCEEeCcCCcCCc--hhh-
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCV--ENEGIERLSRLSNLKMLDLSENLFNN--SIL-  141 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~i--p~~~~~~~~~l~~L~~L~ls~N~l~g--~iP-  141 (167)
                      .+++.|++++|.+..+     .+..+..+++|++|++++|.+.|.+  |..  ..+..+++|++|++++|++++  .++ 
T Consensus       149 ~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNF-----SCEQVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             TTCCEEEEESCSCCCC-----CTTTCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             CCCcEEEeeCCCCccc-----hHHHhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCCcCcchHHHHH
Confidence            3455666666655432     2345667888888888888877652  333  002677778888888887773  233 


Q ss_pred             HhhhcCCCCCEEECcCCcceecCC
Q 043924          142 SSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       142 ~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ..+.++++|++|++++|++++.+|
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HHHhcCCCCCEEECCCCcCCcccc
Confidence            334567777888888887777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=94.31  Aligned_cols=66  Identities=27%  Similarity=0.283  Sum_probs=33.0

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      |..+++|++|++++|.+.+..|..    +..+++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             ccCCCCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            344445555555555554444443    445555555555555555444444555555555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.12  E-value=1.6e-10  Score=89.44  Aligned_cols=85  Identities=20%  Similarity=0.294  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      +++.|++++|.+..+     .+..+..+++|++|++++|.+++..+..    +..+++|++|++++|+++ .+|..+..+
T Consensus       193 ~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          193 SLTELHLDGNKITKV-----DAASLKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             TCSEEECTTSCCCEE-----CTGGGTTCTTCCEEECCSSCCCEECTTT----GGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             cCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCcCceeChhh----ccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            344555555544422     2345677888888888888888766655    788888888888888888 778888888


Q ss_pred             CCCCEEECcCCccee
Q 043924          148 SSLTSLYLYSNRLEG  162 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG  162 (167)
                      ++|++|++++|++++
T Consensus       263 ~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          263 KYIQVVYLHNNNISA  277 (330)
T ss_dssp             SSCCEEECCSSCCCC
T ss_pred             CCcCEEECCCCcCCc
Confidence            888888888888874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.11  E-value=1.8e-10  Score=96.15  Aligned_cols=92  Identities=25%  Similarity=0.277  Sum_probs=73.7

Q ss_pred             CCEEEEEcCCCCCCCccc-----------c--------ccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924           67 GRVIQLDLSFIGNWDLKE-----------R--------YLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK  127 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~-----------~--------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~  127 (167)
                      .+++.|+|+++.+..+..           +        .+.+..|+.+++|++|++++|.+++..+..    |+.+++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~  150 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLT  150 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH----hccCCCCC
Confidence            457788888877643321           1        122345788999999999999998544443    68999999


Q ss_pred             EEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|++++|++++..|..|+++++|++|++++|.+++
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            99999999999888899999999999999999986

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.11  E-value=1.4e-11  Score=95.04  Aligned_cols=62  Identities=21%  Similarity=0.256  Sum_probs=44.5

Q ss_pred             CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch--hhHhh--hcCCCCCEEECcCCcce
Q 043924           96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS--ILSSV--AHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~--iP~~l--~~l~~L~~L~L~~N~ls  161 (167)
                      ++|++|++++|.+.+..|..    ++.+++|++|++++|++.|.  +|..+  .++++|++|++++|+++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQ----VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTT----CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CCCcEEEeeCCCCccchHHH----hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            67777777777776655555    77777888888888877765  34444  67778888888888776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.09  E-value=1.9e-10  Score=96.83  Aligned_cols=87  Identities=26%  Similarity=0.287  Sum_probs=52.0

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      +++.|++++|.+..+.     +..|..+++|++|++++|.+++..|..    ++.+++|++|++++|++++..|..++++
T Consensus        74 ~L~~L~L~~n~l~~l~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  144 (680)
T 1ziw_A           74 MLKVLNLQHNELSQLS-----DKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQL  144 (680)
T ss_dssp             TCCEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred             CcCEEECCCCccCccC-----hhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchhhccc
Confidence            4555666665554332     234556666666666666666444444    6666666666666666666656666666


Q ss_pred             CCCCEEECcCCcceec
Q 043924          148 SSLTSLYLYSNRLEGN  163 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG~  163 (167)
                      ++|++|++++|++++.
T Consensus       145 ~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A          145 ENLQELLLSNNKIQAL  160 (680)
T ss_dssp             TTCCEEECCSSCCCCB
T ss_pred             ccCCEEEccCCccccc
Confidence            6666666666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.07  E-value=5.6e-11  Score=99.05  Aligned_cols=103  Identities=18%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             CCCCCCCCCCCCc-----ceeeE-EEeCCCCCEEEEEcCCCCCCCcccc--------ccCCcc----ccCCCCccEEEcC
Q 043924           43 HHWVDDEGATDCC-----QWERV-ECSNTTGRVIQLDLSFIGNWDLKER--------YLNASL----FTPFQQLESLYLE  104 (167)
Q Consensus        43 ~~W~~~~~~~~~c-----~w~gv-~C~~~~~~v~~L~L~~~~l~~l~~~--------~l~~~~----~~~l~~L~~L~Ls  104 (167)
                      .+|..+.   ++|     .|.|+ .|.  ..+++.|+++++.++.++..        .+....    ...+++|++|+++
T Consensus        34 ~~W~~~~---~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls  108 (571)
T 3cvr_A           34 DKWEKQA---LPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDAC  108 (571)
T ss_dssp             HHHHTTC---CTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             HHHhccC---Cccccccchhhhccccc--cCCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEcc
Confidence            3565544   677     69998 787  45788899988887654321        000000    0223455555555


Q ss_pred             CCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          105 YNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       105 ~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|.+++ +|.     +..  +|++|++++|++++ +|.   .+++|++|+|++|+|++
T Consensus       109 ~N~l~~-ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          109 DNRLST-LPE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             SSCCSC-CCC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCCCCC-cch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence            555554 443     122  55555555555554 443   44555555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.07  E-value=1.3e-10  Score=90.01  Aligned_cols=86  Identities=22%  Similarity=0.245  Sum_probs=65.5

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      .++.|++++|.+..+     .+..+..+++|++|++++|.+++..+..    +..+++|++|++++|+++ .+|..+..+
T Consensus       194 ~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l  263 (332)
T 2ft3_A          194 TLNELHLDHNKIQAI-----ELEDLLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDNNKLS-RVPAGLPDL  263 (332)
T ss_dssp             SCSCCBCCSSCCCCC-----CTTSSTTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred             CCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence            344555555554432     2345677888999999999988766655    888889999999999988 788888889


Q ss_pred             CCCCEEECcCCcceec
Q 043924          148 SSLTSLYLYSNRLEGN  163 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG~  163 (167)
                      ++|++|++++|++++.
T Consensus       264 ~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          264 KLLQVVYLHTNNITKV  279 (332)
T ss_dssp             TTCCEEECCSSCCCBC
T ss_pred             ccCCEEECCCCCCCcc
Confidence            9999999999988843

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.07  E-value=3.1e-10  Score=93.84  Aligned_cols=84  Identities=25%  Similarity=0.207  Sum_probs=73.7

Q ss_pred             EEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCC
Q 043924           70 IQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS  149 (167)
Q Consensus        70 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~  149 (167)
                      +.+++++++++.++.      .+  .++|++|++++|.+++..|..    |..+++|++|++++|++++..|..|.++++
T Consensus        34 ~~l~ls~~~L~~ip~------~~--~~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           34 SMVDYSNRNLTHVPK------DL--PPRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             CEEECTTSCCCSCCT------TS--CTTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             cEEEcCCCCCccCCC------CC--CCCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            789999999886532      12  278999999999999776666    999999999999999999988999999999


Q ss_pred             CCEEECcCCcceecCCC
Q 043924          150 LTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       150 L~~L~L~~N~lsG~iP~  166 (167)
                      |++|+|++|+++ .||.
T Consensus       102 L~~L~Ls~N~l~-~lp~  117 (562)
T 3a79_B          102 LEYLDVSHNRLQ-NISC  117 (562)
T ss_dssp             CCEEECTTSCCC-EECS
T ss_pred             CCEEECCCCcCC-ccCc
Confidence            999999999999 6775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.05  E-value=2.6e-10  Score=98.65  Aligned_cols=93  Identities=26%  Similarity=0.258  Sum_probs=75.7

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh-Hhhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL-SSVA  145 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP-~~l~  145 (167)
                      .+++.|+|++|.+..+     .+..|..+++|++|++++|.+++.+|..  ..+.++++|++|++++|++++..| ..|+
T Consensus        73 ~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFL-----HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTCCEEECTTCCCCEE-----CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             CCCCEEECCCCcCccc-----CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccccchhHh
Confidence            4566777777766533     3567889999999999999999876653  127899999999999999998654 6799


Q ss_pred             cCCCCCEEECcCCcceecCCC
Q 043924          146 HLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      ++++|++|++++|++++..|.
T Consensus       146 ~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A          146 KLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             TCSSCCEEEEESSCCCCCCSG
T ss_pred             hCCCCCEEECCCCcCCeeCHH
Confidence            999999999999999987664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.04  E-value=7e-10  Score=86.09  Aligned_cols=68  Identities=26%  Similarity=0.356  Sum_probs=55.7

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +..+++|++|++++|.+++. + .    +..+++|++|++++|++++..|..++++++|++|++++|++++..|
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI-S-V----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-G----GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             HhcCCCcCEEEccCCccCCC-h-h----hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            56677888888888888753 3 2    7788899999999999988888888999999999999999887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.03  E-value=2.2e-10  Score=88.07  Aligned_cols=92  Identities=17%  Similarity=0.122  Sum_probs=55.1

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee--cCcccccccCCCCCCCEEeCcCCcCCc--hhhH
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC--VENEGIERLSRLSNLKMLDLSENLFNN--SILS  142 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~--ip~~~~~~~~~l~~L~~L~ls~N~l~g--~iP~  142 (167)
                      .+++.|++++|.+..+.     +..+..+++|++|++++|.+.+.  ++..  ..+..+++|++|++++|+++.  ..+.
T Consensus       145 ~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~  217 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFS-----CEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGMETPTGVCA  217 (310)
T ss_dssp             SCCCEEEEECCSSCCCC-----TTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred             cCCCEEEeeCCCcchhh-----HHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCCchHHHHH
Confidence            35677777777765332     34566788888888888887653  2221  013556666666666666652  1111


Q ss_pred             -hhhcCCCCCEEECcCCcceecCC
Q 043924          143 -SVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       143 -~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                       .++.+++|++|+|++|++++.+|
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             HHHhcCCCCCEEECCCCCCCccch
Confidence             24566666666666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.99  E-value=4e-10  Score=87.98  Aligned_cols=82  Identities=24%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH--hh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS--SV  144 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~--~l  144 (167)
                      .+++.|++++|.+..+.     +..+..+++|++|++++|.+++..+..    +..+++|++|++++|++++ +|.  .+
T Consensus        76 ~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~-l~~~~~~  145 (353)
T 2z80_A           76 VNLQALVLTSNGINTIE-----EDSFSSLGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYKT-LGETSLF  145 (353)
T ss_dssp             TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCSSCCHHH----HTTCTTCSEEECTTCCCSS-SCSSCSC
T ss_pred             CCCCEEECCCCccCccC-----HhhcCCCCCCCEEECCCCcCCcCCHhH----hCCCccCCEEECCCCCCcc-cCchhhh
Confidence            45777788777765432     233555566666666666655322222    4555555555555555553 332  44


Q ss_pred             hcCCCCCEEECcCC
Q 043924          145 AHLSSLTSLYLYSN  158 (167)
Q Consensus       145 ~~l~~L~~L~L~~N  158 (167)
                      .++++|++|++++|
T Consensus       146 ~~l~~L~~L~l~~n  159 (353)
T 2z80_A          146 SHLTKLQILRVGNM  159 (353)
T ss_dssp             TTCTTCCEEEEEES
T ss_pred             ccCCCCcEEECCCC
Confidence            55555555555555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=5.3e-10  Score=91.35  Aligned_cols=67  Identities=22%  Similarity=0.186  Sum_probs=58.0

Q ss_pred             cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh-cCCCCCEEECcCCcceec
Q 043924           93 TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA-HLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~-~l~~L~~L~L~~N~lsG~  163 (167)
                      ..+++|++|++++|.+++..|..    ++.+++|++|++++|++++.+|..+. .+++|++|+|++|.+++.
T Consensus       117 ~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          117 SRGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CCCSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             cccCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            34788999999999999887776    88999999999999999998888876 788888888888888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.98  E-value=1.4e-09  Score=83.03  Aligned_cols=62  Identities=39%  Similarity=0.582  Sum_probs=34.4

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +..+++|++|++++|.+++.  +.    +..+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       130 l~~l~~L~~L~l~~n~l~~~--~~----l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GG----GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hcCCCCCCEEEccCCcCCcc--hh----hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            33455555555555555532  22    5556666666666666654433  556666666666666555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.98  E-value=6.4e-10  Score=86.34  Aligned_cols=65  Identities=26%  Similarity=0.327  Sum_probs=56.7

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      .+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|  +..+++|++|++++|.|+
T Consensus       282 ~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          282 VLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGGCTTCSEEECCSSCCCGGGHHH----HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhcCCCCCCEEECcCCcCCCcChhH----hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            3667899999999999999877776    8999999999999999998776  889999999999999986

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.98  E-value=2.4e-10  Score=87.88  Aligned_cols=87  Identities=21%  Similarity=0.017  Sum_probs=37.6

Q ss_pred             EEEEEcCCCCCCCccccccCCccc--cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           69 VIQLDLSFIGNWDLKERYLNASLF--TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        69 v~~L~L~~~~l~~l~~~~l~~~~~--~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      ++.|++++|.+....     +..+  ..+++|++|++++|.+++..+......+..+++|++|++++|++++..|..++.
T Consensus        93 L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           93 LKELTLEDLKITGTM-----PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             CCEEEEESCCCBSCC-----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             eeEEEeeCCEeccch-----hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            666777766654321     1112  344444444444444444322110001233444444444444444444444444


Q ss_pred             CCCCCEEECcCCcc
Q 043924          147 LSSLTSLYLYSNRL  160 (167)
Q Consensus       147 l~~L~~L~L~~N~l  160 (167)
                      +++|++|+|++|++
T Consensus       168 l~~L~~L~Ls~N~l  181 (310)
T 4glp_A          168 FPALTSLDLSDNPG  181 (310)
T ss_dssp             CTTCCEEECCSCTT
T ss_pred             CCCCCEEECCCCCC
Confidence            44444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.98  E-value=1.8e-09  Score=83.31  Aligned_cols=60  Identities=30%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +++|++|++++|.+++. |.     ...+++|++|++++|++++ +|..+..+++|++|++++|+++
T Consensus       168 l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             TTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred             cCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence            44555555555554432 22     2335566666666666664 3333666666666666666665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.98  E-value=2.6e-10  Score=84.38  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=16.6

Q ss_pred             EEeCcCC-cCCchhhHhhhcCCCCC-EEECcCCcce
Q 043924          128 MLDLSEN-LFNNSILSSVAHLSSLT-SLYLYSNRLE  161 (167)
Q Consensus       128 ~L~ls~N-~l~g~iP~~l~~l~~L~-~L~L~~N~ls  161 (167)
                      +|++++| ++++..+..|.++++|+ +|++++|+++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            4444444 44433333445555555 5555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.94  E-value=2.4e-09  Score=81.81  Aligned_cols=64  Identities=28%  Similarity=0.423  Sum_probs=41.7

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~  163 (167)
                      +..+++|++|++++|.+++ ++ .    +..+++|++|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       108 l~~l~~L~~L~L~~n~i~~-~~-~----l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             hccCCCCCEEECCCCcCCC-Ch-h----hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            4556666666666666654 22 2    56667777777777777654  4567777777777777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.94  E-value=2.8e-09  Score=82.14  Aligned_cols=84  Identities=21%  Similarity=0.094  Sum_probs=54.5

Q ss_pred             EEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccccccc-CCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           69 VIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL-SRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        69 v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~-~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      ++.|++++|.+..+.     +..+..+++|++|++++|.+++..|..    + ..+++|++|++++|++++. |. ...+
T Consensus       122 L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~-~~-~~~l  190 (317)
T 3o53_A          122 KKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-KG-QVVF  190 (317)
T ss_dssp             CEEEECCSSCCCSGG-----GBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-EC-CCCC
T ss_pred             CCEEECCCCCCCCcc-----chhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcCccc-cc-cccc
Confidence            445555555444322     234556777888888888877665554    4 3677788888888887754 32 3357


Q ss_pred             CCCCEEECcCCcceec
Q 043924          148 SSLTSLYLYSNRLEGN  163 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG~  163 (167)
                      ++|++|++++|++++-
T Consensus       191 ~~L~~L~Ls~N~l~~l  206 (317)
T 3o53_A          191 AKLKTLDLSSNKLAFM  206 (317)
T ss_dssp             TTCCEEECCSSCCCEE
T ss_pred             ccCCEEECCCCcCCcc
Confidence            7888888888888753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.93  E-value=3.9e-09  Score=81.19  Aligned_cols=61  Identities=30%  Similarity=0.345  Sum_probs=24.6

Q ss_pred             cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           93 TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ..+++|++|++++|.+++ +|.     +..+++|++|++++|++++..+  +..+++|++|++++|+++
T Consensus       104 ~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITD-VTP-----LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             TTCTTCCEEECTTSCCCC-CGG-----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             cCCCCCCEEECCCCCCCC-chh-----hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            334444444444444443 221     3344444444444444433221  334444444444444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.92  E-value=1.7e-09  Score=81.47  Aligned_cols=79  Identities=23%  Similarity=0.346  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.|++++|.+..+..       +.. ++|++|++++|.+++ ++ .    +..+++|++|++++|++++. | .+..
T Consensus        85 ~~L~~L~L~~N~l~~l~~-------~~~-~~L~~L~L~~N~l~~-~~-~----l~~l~~L~~L~Ls~N~i~~~-~-~l~~  148 (263)
T 1xeu_A           85 TKLEELSVNRNRLKNLNG-------IPS-ACLSRLFLDNNELRD-TD-S----LIHLKNLEILSIRNNKLKSI-V-MLGF  148 (263)
T ss_dssp             SSCCEEECCSSCCSCCTT-------CCC-SSCCEEECCSSCCSB-SG-G----GTTCTTCCEEECTTSCCCBC-G-GGGG
T ss_pred             CCCCEEECCCCccCCcCc-------ccc-CcccEEEccCCccCC-Ch-h----hcCcccccEEECCCCcCCCC-h-HHcc
Confidence            457777888777765432       111 455555555555543 22 1    44555555555555555432 2 3445


Q ss_pred             CCCCCEEECcCCcce
Q 043924          147 LSSLTSLYLYSNRLE  161 (167)
Q Consensus       147 l~~L~~L~L~~N~ls  161 (167)
                      +++|++|++++|+++
T Consensus       149 l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          149 LSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCcCc
Confidence            555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.92  E-value=3.1e-09  Score=89.14  Aligned_cols=63  Identities=38%  Similarity=0.573  Sum_probs=33.5

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +..+++|+.|+|++|.+++.  +.    +..+++|+.|+|++|++++..|  +..+++|+.|+|++|+|++
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l--~~----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--GG----GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccCCCccCEEECCCCccCCc--hh----hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            34455555555555555542  22    5555555566666555555444  5555555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.91  E-value=5e-09  Score=78.96  Aligned_cols=81  Identities=25%  Similarity=0.317  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ..+++.|++++|.+..+.      . +..+++|++|++++|.+++ +|.     +.. ++|++|++++|++++ +| .+.
T Consensus        62 l~~L~~L~L~~N~i~~~~------~-l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~~-~l~  125 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLS------P-LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-TD-SLI  125 (263)
T ss_dssp             CTTCCEEECCSSCCCCCG------G-GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-SG-GGT
T ss_pred             CCCCCEEECCCCccCCCh------h-hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-Ch-hhc
Confidence            356888899988887653      2 7789999999999999986 554     334 899999999999996 44 589


Q ss_pred             cCCCCCEEECcCCccee
Q 043924          146 HLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG  162 (167)
                      ++++|++|++++|++++
T Consensus       126 ~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             TCTTCCEEECTTSCCCB
T ss_pred             CcccccEEECCCCcCCC
Confidence            99999999999999986

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.90  E-value=2e-09  Score=83.08  Aligned_cols=64  Identities=22%  Similarity=0.226  Sum_probs=38.0

Q ss_pred             CCCCccEEEcCCCceeee-cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC-cce
Q 043924           94 PFQQLESLYLEYNNIAGC-VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN-RLE  161 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g~-ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N-~ls  161 (167)
                      .+++|++|++++|.+++. +|..    +..+++|++|++++|++++..|..++++++|++|++++| .++
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            456666666666666544 4544    555666666666666666555555666666666666665 444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.90  E-value=4.7e-09  Score=80.75  Aligned_cols=41  Identities=27%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             cCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       120 ~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +..+++|++|++++|++++..+  +..+++|++|++++|++++
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred             hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence            3444555555555555543222  4555555555555555553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.87  E-value=4.5e-09  Score=88.14  Aligned_cols=67  Identities=27%  Similarity=0.406  Sum_probs=48.4

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      .+..+++|+.|+|++|.+.+ ++ .    +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++..|
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             hhccCCCCCEEEecCCCCCC-Cc-c----ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            35567777777777777765 33 2    67778888888888888764  457788888888888888876543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.87  E-value=2.4e-10  Score=88.26  Aligned_cols=98  Identities=18%  Similarity=0.176  Sum_probs=81.1

Q ss_pred             CCcceeeEEEeCCCCCEEEEEcCCCCCCCccccccCCccccCC--CCccEEEcCCCceeeecCcccccccCCCCCCCEEe
Q 043924           53 DCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPF--QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLD  130 (167)
Q Consensus        53 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l--~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~  130 (167)
                      -|..|.++.|+  ...++.++++++.+.        +..+..+  +.++.|++++|.+.+..+.     +..+++|++|+
T Consensus        35 vc~~W~~~~~~--~~~~~~l~l~~~~~~--------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~   99 (336)
T 2ast_B           35 VCKRWYRLASD--ESLWQTLDLTGKNLH--------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMD   99 (336)
T ss_dssp             SCHHHHHHHTC--STTSSEEECTTCBCC--------HHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEE
T ss_pred             HHHHHHHHhcC--chhheeeccccccCC--------HHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEE
Confidence            44579998886  456889999988764        2334555  8899999999999987665     56899999999


Q ss_pred             CcCCcCCch-hhHhhhcCCCCCEEECcCCcceecCC
Q 043924          131 LSENLFNNS-ILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       131 ls~N~l~g~-iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +++|++++. +|..+.++++|++|++++|++++.+|
T Consensus       100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~  135 (336)
T 2ast_B          100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV  135 (336)
T ss_dssp             CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred             ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence            999999976 89999999999999999999886544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.86  E-value=6.6e-09  Score=84.04  Aligned_cols=63  Identities=21%  Similarity=0.366  Sum_probs=46.8

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +..+++|++|++++|.+++. + .    +..+++|++|++++|++++..|  +.++++|+.|++++|++++
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~-~-~----l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV-S-S----LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-G-G----GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCccCCEeECCCCccCCc-h-h----hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            44566677777777766653 2 2    7778888888888888887776  7788888888888888876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.85  E-value=7e-10  Score=87.58  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=20.3

Q ss_pred             CCCCCEEeCcCCcCCc----hhhHhh-hcCCCCCEEECcCCcceec
Q 043924          123 LSNLKMLDLSENLFNN----SILSSV-AHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       123 l~~L~~L~ls~N~l~g----~iP~~l-~~l~~L~~L~L~~N~lsG~  163 (167)
                      +++|++|++++|++++    .+|..+ .++++|++|++++|++++.
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            4455555555555554    244444 3445555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.84  E-value=2.7e-09  Score=80.92  Aligned_cols=67  Identities=25%  Similarity=0.333  Sum_probs=56.2

Q ss_pred             CCCCccEEEcCCCceee--ecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC--CCCEEECcCCcceecCCC
Q 043924           94 PFQQLESLYLEYNNIAG--CVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS--SLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g--~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~--~L~~L~L~~N~lsG~iP~  166 (167)
                      ++++|+.|+|++|.+++  .+|..    +..+++|++|+|++|+|++.  ..+..+.  +|++|+|++|.+++++|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            47899999999999998  56665    77899999999999999975  3344444  999999999999998773

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.84  E-value=7.9e-09  Score=83.78  Aligned_cols=78  Identities=19%  Similarity=0.153  Sum_probs=55.9

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.|++++|.++.+        .++.+++|++|++++|.+++. |      ++.+++|++|++++|++++ +|  +++
T Consensus        64 ~~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~  125 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQ  125 (457)
T ss_dssp             TTCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred             CCCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCC
Confidence            4566666666665533        156677788888888877763 2      6778888888888888876 44  778


Q ss_pred             CCCCCEEECcCCccee
Q 043924          147 LSSLTSLYLYSNRLEG  162 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG  162 (167)
                      +++|++|++++|++++
T Consensus       126 l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTE  141 (457)
T ss_dssp             CTTCCEEECTTSCCSC
T ss_pred             CCcCCEEECCCCccce
Confidence            8888888888888876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.84  E-value=6.6e-09  Score=84.05  Aligned_cols=66  Identities=26%  Similarity=0.314  Sum_probs=46.1

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +..+++|++|++++|.+++..|      +..+++|++|++++|++++.  ..+.++++|++|++++|+++|.+|
T Consensus       305 ~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            4456666777777776665433      45677777777777777764  357778888888888888877655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.83  E-value=2.7e-11  Score=87.49  Aligned_cols=65  Identities=32%  Similarity=0.452  Sum_probs=43.0

Q ss_pred             CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh-HhhhcCCCCCEEECcCCcceecCC
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL-SSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +++|++|++++|.+++ +| .    +..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~----~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-G----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-H----HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-c----cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            3455566666665554 33 2    5666777777777777775322 467788888888888888876654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.81  E-value=1.2e-08  Score=82.67  Aligned_cols=61  Identities=16%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +..+++|++|++++|.+++ +|..    +   .+|++|++++|++++ +| .++++++|++|++++|++++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~~----~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPDL----P---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCCC----C---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             cCCCCCCCEEECCCCcCcc-cCCC----c---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            5666777777777777764 5543    2   367777777777775 55 47777888888888887775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.79  E-value=1.7e-09  Score=85.42  Aligned_cols=92  Identities=20%  Similarity=0.174  Sum_probs=74.6

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCcee----eecCcccccccCCCCCCCEEeCcCCcCCch---
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIA----GCVENEGIERLSRLSNLKMLDLSENLFNNS---  139 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~----g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~---  139 (167)
                      .+++.|++++|.+...+...+.+..+..+++|++|++++|.++    +.+|..    +..+++|++|+|++|++++.   
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCEEECTTCCCCHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCEEECCCCCCchhhHH
Confidence            4799999999988632211122225678999999999999996    667776    89999999999999999976   


Q ss_pred             -hhHhhhc--CCCCCEEECcCCccee
Q 043924          140 -ILSSVAH--LSSLTSLYLYSNRLEG  162 (167)
Q Consensus       140 -iP~~l~~--l~~L~~L~L~~N~lsG  162 (167)
                       +|..+..  +++|++|+|++|++++
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCH
Confidence             6777744  9999999999999987

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.79  E-value=1.8e-08  Score=81.73  Aligned_cols=62  Identities=29%  Similarity=0.275  Sum_probs=42.2

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~  163 (167)
                      +..+++|++|++++|.+++.   .    ++.+++|++|++++|++++ +|  ++.+++|++|++++|+++|.
T Consensus       187 l~~l~~L~~L~l~~N~l~~~---~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKL---D----LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC---C----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             cccCCCCCEEECcCCcCCee---c----cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            44566666666666666653   2    5667777777777777776 55  66777777777777777753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.77  E-value=9e-11  Score=84.72  Aligned_cols=83  Identities=23%  Similarity=0.225  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      -.+++.|++++|.+..+      + .+..+++|++|++++|.++ .+|..    +..+++|++|++++|++++ +| .+.
T Consensus        47 l~~L~~L~ls~n~l~~l------~-~~~~l~~L~~L~l~~n~l~-~l~~~----~~~~~~L~~L~L~~N~l~~-l~-~~~  112 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKI------S-SLSGMENLRILSLGRNLIK-KIENL----DAVADTLEELWISYNQIAS-LS-GIE  112 (198)
T ss_dssp             TTTCSEEECSEEEESCC------C-CHHHHTTCCEEEEEEEEEC-SCSSH----HHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred             CCCCCEEECCCCCCccc------c-ccccCCCCCEEECCCCCcc-cccch----hhcCCcCCEEECcCCcCCc-CC-ccc
Confidence            35688999999887654      2 4677899999999999998 67776    7778899999999999996 56 588


Q ss_pred             cCCCCCEEECcCCccee
Q 043924          146 HLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG  162 (167)
                      .+++|++|++++|++++
T Consensus       113 ~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHHSSEEEESEEECCC
T ss_pred             cCCCCCEEECCCCcCCc
Confidence            99999999999999884

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.77  E-value=6.5e-09  Score=86.66  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=43.1

Q ss_pred             CCccEEEcCCCceeeecCcccccccCCCCCC-------CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           96 QQLESLYLEYNNIAGCVENEGIERLSRLSNL-------KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L-------~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      ++|++|++++|.++ .+|.     +..  +|       ++|++++|+|+ .+|..+.++++|++|+|++|+++|.+|.
T Consensus       180 ~~L~~L~Ls~N~L~-~lp~-----~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          180 ESLEALDVSTNLLE-SLPA-----VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             TTCCEEECCSSCCS-SCCC-----CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             CCCCEEECcCCCCC-chhh-----HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            45555555555555 3443     121  45       88888888888 5788888899999999999999987763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.77  E-value=5.5e-09  Score=84.63  Aligned_cols=64  Identities=31%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc--hhhHhhhcC-------------CCCCEEECcCCc
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN--SILSSVAHL-------------SSLTSLYLYSNR  159 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g--~iP~~l~~l-------------~~L~~L~L~~N~  159 (167)
                      +++|++|++++|.++ .+|.       .+++|++|++++|++++  .+|..++++             ++|++|++++|+
T Consensus       336 ~~~L~~L~L~~N~l~-~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          336 PPRLERLIASFNHLA-EVPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             CCcCCEEECCCCccc-cccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            456666677666666 3443       35778888888888888  778877777             788888888888


Q ss_pred             cee--cCCC
Q 043924          160 LEG--NIDV  166 (167)
Q Consensus       160 lsG--~iP~  166 (167)
                      ++|  .||+
T Consensus       408 l~~~~~iP~  416 (454)
T 1jl5_A          408 LREFPDIPE  416 (454)
T ss_dssp             ---------
T ss_pred             CCccccchh
Confidence            887  7775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.75  E-value=1.2e-08  Score=85.80  Aligned_cols=62  Identities=26%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +++|++|++++|.++ .+|.       .+++|++|++++|+++ .+|..+.++++|+.|+|++|+++|.+|
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            455666666666665 3442       4578999999999999 788899999999999999999998765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.71  E-value=2.7e-09  Score=83.73  Aligned_cols=90  Identities=26%  Similarity=0.178  Sum_probs=53.5

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCC-----CCccEEEcCCCceeeecCcccccccCCC-CCCCEEeCcCCcCCchhh
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPF-----QQLESLYLEYNNIAGCVENEGIERLSRL-SNLKMLDLSENLFNNSIL  141 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l-----~~L~~L~Ls~n~l~g~ip~~~~~~~~~l-~~L~~L~ls~N~l~g~iP  141 (167)
                      +++.|+|++|.+...+.     ..+..+     ++|++|++++|.+++..+......+..+ ++|++|++++|++++..+
T Consensus        52 ~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNS-----DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             TCCEEECCSSCGGGSCH-----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             ceeEEECcCCCCCHHHH-----HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            56677777776543221     112222     6777777777777655444311113344 677788888887776555


Q ss_pred             Hhhhc-----CCCCCEEECcCCccee
Q 043924          142 SSVAH-----LSSLTSLYLYSNRLEG  162 (167)
Q Consensus       142 ~~l~~-----l~~L~~L~L~~N~lsG  162 (167)
                      ..+..     .++|++|+|++|+++.
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCH
Confidence            54432     2578888888887763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.60  E-value=7.8e-09  Score=86.95  Aligned_cols=104  Identities=15%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             CCCCCCCCCCCCcceeeEEE------eCCCCCEEEEEcCCCCCCCccccc--------cCCc----cccCCCCccEEEcC
Q 043924           43 HHWVDDEGATDCCQWERVEC------SNTTGRVIQLDLSFIGNWDLKERY--------LNAS----LFTPFQQLESLYLE  104 (167)
Q Consensus        43 ~~W~~~~~~~~~c~w~gv~C------~~~~~~v~~L~L~~~~l~~l~~~~--------l~~~----~~~~l~~L~~L~Ls  104 (167)
                      ..|....   ++|.|.|..|      ......++.++++++.++.++...        +...    ....+++|++|+++
T Consensus        13 ~~W~~~~---~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls   89 (622)
T 3g06_A           13 SAWRRAA---PAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVS   89 (622)
T ss_dssp             HHHHHTC---CGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEEC
T ss_pred             HHHHhcC---CcchhccccccCcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcC
Confidence            4565555   7888865321      111234667777777665443210        0000    00124455666666


Q ss_pred             CCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          105 YNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       105 ~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +|.++ .+|.       .+++|++|++++|++++ +|.   .+++|+.|++++|+++
T Consensus        90 ~N~l~-~lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           90 GNQLT-SLPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             SCCCS-CCCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCcCC-cCCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence            66554 2332       34556666666666654 333   3455555555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.56  E-value=1.5e-08  Score=81.29  Aligned_cols=72  Identities=22%  Similarity=0.172  Sum_probs=54.4

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCC-CCCCCEEeCcCCcCCc----hhhHhhhcCCCCCEEECcCCcceec
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSR-LSNLKMLDLSENLFNN----SILSSVAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~-l~~L~~L~ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~lsG~  163 (167)
                      +..+++|++|++++|.+++..+......+.. .++|++|++++|++++    .+|..+..+++|++|++++|++++.
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            3446888899999998876544331111222 6789999999999986    7888899999999999999998753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.54  E-value=7.2e-08  Score=73.07  Aligned_cols=82  Identities=21%  Similarity=0.255  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh----
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL----  141 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP----  141 (167)
                      -.+++.|+|++|.+..+...   +..+..+++|+.|+|++|.+++.  .+ ...+..+ +|++|+|++|.+.+.+|    
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l---~~~~~~l~~L~~L~Ls~N~i~~~--~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDM---SSIVQKAPNLKILNLSGNELKSE--RE-LDKIKGL-KLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGG---TTHHHHSTTCCEEECTTSCCCSG--GG-GGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred             CCCCCEEECCCCCCCCCccc---hhHHhhCCCCCEEECCCCccCCc--hh-hhhcccC-CcceEEccCCcCccccCcchh
Confidence            35799999999999876432   23456799999999999999864  22 1114444 99999999999998765    


Q ss_pred             ---HhhhcCCCCCEEE
Q 043924          142 ---SSVAHLSSLTSLY  154 (167)
Q Consensus       142 ---~~l~~l~~L~~L~  154 (167)
                         ..+..+++|+.||
T Consensus       242 y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          242 YISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHCTTCCEES
T ss_pred             HHHHHHHHCcccCeEC
Confidence               3478899999886

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.50  E-value=6.3e-08  Score=75.86  Aligned_cols=94  Identities=23%  Similarity=0.257  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCC-CccEEEcCCCceeeecCcccccccCCC-----CCCCEEeCcCCcCCch
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQ-QLESLYLEYNNIAGCVENEGIERLSRL-----SNLKMLDLSENLFNNS  139 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~-~L~~L~Ls~n~l~g~ip~~~~~~~~~l-----~~L~~L~ls~N~l~g~  139 (167)
                      ...++.|++++|.++..+...+ ...+..++ +|++|++++|.+++..+..    +..+     ++|++|++++|++++.
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDE----LVQILAAIPANVTSLNLSGNFLSYK   95 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHH----HHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             CCCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHH----HHHHHhccCCCccEEECcCCcCChH
Confidence            4559999999998865432100 03456677 8999999999998766655    5443     8999999999999987


Q ss_pred             hhHhhhc----C-CCCCEEECcCCcceecC
Q 043924          140 ILSSVAH----L-SSLTSLYLYSNRLEGNI  164 (167)
Q Consensus       140 iP~~l~~----l-~~L~~L~L~~N~lsG~i  164 (167)
                      .+..+..    + ++|++|++++|++++..
T Consensus        96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           96 SSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            7775544    4 89999999999998643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.43  E-value=2.6e-08  Score=79.87  Aligned_cols=63  Identities=22%  Similarity=0.266  Sum_probs=35.2

Q ss_pred             CCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc-----CCCCCEEECcCCccee
Q 043924           96 QQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH-----LSSLTSLYLYSNRLEG  162 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~-----l~~L~~L~L~~N~lsG  162 (167)
                      ++|++|++++|.+++.    ++..    +..+++|++|++++|++++..+..+..     .++|++|++++|++++
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~----l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSV----LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHH----HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHH----HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            3555555555555433    2222    455566666666666666554444432     5566677776666664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.42  E-value=6.1e-08  Score=76.68  Aligned_cols=65  Identities=22%  Similarity=0.233  Sum_probs=41.2

Q ss_pred             cCCCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCcce
Q 043924           93 TPFQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ...++|++|+|++|.+...    ++..    +...++|++|+|++|+++..    ++..+...++|++|+|++|.|+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~----L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQ----LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHH----GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHH----HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3456677777777776532    2222    55566777777777777642    3444556677777777777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=74.90  Aligned_cols=64  Identities=16%  Similarity=0.175  Sum_probs=45.1

Q ss_pred             CCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCccee
Q 043924           95 FQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      .+.|++|+|++|.++..    ++..    +...++|++|+|++|+++..    ++..+...++|++|+|++|.++.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~----L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEG----LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHH----HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHH----HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            46677888888877542    2222    56677888888888888642    45666777888888888888763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.35  E-value=7.4e-07  Score=69.48  Aligned_cols=83  Identities=12%  Similarity=0.035  Sum_probs=63.6

Q ss_pred             EEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH-hhhcCCC
Q 043924           71 QLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS-SVAHLSS  149 (167)
Q Consensus        71 ~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~-~l~~l~~  149 (167)
                      .++.++++++.++.      .+  .+++++|+|++|+++. +|+.   .|.++++|++|+|++|++.+.+|. .|.++++
T Consensus        13 ~v~C~~~~Lt~iP~------~l--~~~l~~L~Ls~N~i~~-i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X           13 VFLCQESKVTEIPS------DL--PRNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             EEEEESTTCCSCCT------TC--CTTCSEEEEESCCCSE-ECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             EEEecCCCCCccCc------Cc--CCCCCEEEccCCcCCC-cCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            46778888876532      12  3579999999999984 5643   289999999999999999887775 5788998


Q ss_pred             CCE-EECcCCcceecCC
Q 043924          150 LTS-LYLYSNRLEGNID  165 (167)
Q Consensus       150 L~~-L~L~~N~lsG~iP  165 (167)
                      ++. +.+++|++++-.|
T Consensus        81 l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINP   97 (350)
T ss_dssp             CCEEEEEEETTCCEECT
T ss_pred             hhhhhcccCCcccccCc
Confidence            875 6677898885434

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=6.2e-07  Score=64.03  Aligned_cols=90  Identities=19%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeC--cCCcCCch-
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDL--SENLFNNS-  139 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~l--s~N~l~g~-  139 (167)
                      ..++.|+|++|.+.+-+...+ ...+...+.|++|+|++|.+...    +...    +...+.|++|+|  ++|.++.. 
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l-~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~----L~~n~~L~~L~L~~~~N~i~~~g  139 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFAL-AEMLKVNNTLKSLNVESNFISGSGILALVEA----LQSNTSLIELRIDNQSQPLGNNV  139 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHH-HHHHHHCSSCCEEECCSSCCCHHHHHHHHHG----GGGCSSCCEEECCCCSSCCCHHH
T ss_pred             CCcCEEECcCCCCChHHHHHH-HHHHHhCCCcCEEECcCCcCCHHHHHHHHHH----HHhCCCceEEEecCCCCCCCHHH
Confidence            456677777776643211111 11123346778888888877643    2222    666677888888  77887653 


Q ss_pred             ---hhHhhhcCCCCCEEECcCCcce
Q 043924          140 ---ILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       140 ---iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                         +...+...++|++|+|++|.+.
T Consensus       140 ~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          140 EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCcCEEeccCCCCC
Confidence               3445566677888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=2.5e-06  Score=65.88  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC-EEeCcCCcCCchhhHhhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK-MLDLSENLFNNSILSSVA  145 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~-~L~ls~N~l~g~iP~~l~  145 (167)
                      ..++.++++++.+..++     ...|..+++|+.+++.+| +. .|+..   .|.++++|+ .+++.+ +++..-+..|.
T Consensus       226 ~~L~~l~L~~n~i~~I~-----~~aF~~~~~L~~l~l~~n-i~-~I~~~---aF~~~~~L~~~l~l~~-~l~~I~~~aF~  294 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIP-----DFTFAQKKYLLKIKLPHN-LK-TIGQR---VFSNCGRLAGTLELPA-SVTAIEFGAFM  294 (329)
T ss_dssp             TTCCEEECTTBCCCEEC-----TTTTTTCTTCCEEECCTT-CC-EECTT---TTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred             CCCeEEECCCCCcceec-----HhhhhCCCCCCEEECCcc-cc-eehHH---HhhCChhccEEEEEcc-cceEEchhhhh
Confidence            46889999998887554     456888999999999998 55 46654   389999999 999988 77755567899


Q ss_pred             cCCCCCEEECcCCcce
Q 043924          146 HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       146 ~l~~L~~L~L~~N~ls  161 (167)
                      ++++|+.+++++|+++
T Consensus       295 ~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          295 GCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TCTTEEEEEECSSCCC
T ss_pred             CCccCCEEEeCCCccC
Confidence            9999999999988887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.16  E-value=6.2e-07  Score=64.01  Aligned_cols=96  Identities=17%  Similarity=0.105  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCC-CCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----h
Q 043924           66 TGRVIQLDLSFI-GNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----I  140 (167)
Q Consensus        66 ~~~v~~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----i  140 (167)
                      ...++.|+|+++ .+.+-+...+ ...+...++|++|+|++|.+...--......+...+.|++|+|++|+++..    +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            567999999998 8753221111 122455789999999999996421111111256668899999999999864    5


Q ss_pred             hHhhhcCCCCCEEEC--cCCccee
Q 043924          141 LSSVAHLSSLTSLYL--YSNRLEG  162 (167)
Q Consensus       141 P~~l~~l~~L~~L~L--~~N~lsG  162 (167)
                      ...+...++|++|+|  ++|.++.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCH
Confidence            667788899999999  8898863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.02  E-value=2.7e-06  Score=70.18  Aligned_cols=66  Identities=20%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             CCCCccEEEcCCCceee-ecCcccccccCCCCCCCEEeCcCCcCCch-hhHhhhcCCCCCEEECcCCcceec
Q 043924           94 PFQQLESLYLEYNNIAG-CVENEGIERLSRLSNLKMLDLSENLFNNS-ILSSVAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g-~ip~~~~~~~~~l~~L~~L~ls~N~l~g~-iP~~l~~l~~L~~L~L~~N~lsG~  163 (167)
                      .+++|++|++++|.+++ .++..    +..+++|++|++++|.|++. ++..+..+++|++|+|++|++++.
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEF----SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHH----HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             hCccceEeeccCCCCCHHHHHHH----HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            36788999999998876 34443    67889999999999998765 555567899999999999998754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.79  E-value=1.4e-05  Score=65.79  Aligned_cols=65  Identities=12%  Similarity=0.168  Sum_probs=49.1

Q ss_pred             CCCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCC----chhhHhhhcCCCCCEEECcCCccee
Q 043924           94 PFQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFN----NSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~----g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      .+++|++|++++|.+++.    ++..    +..+++|++|++++|+++    +.++..+.++++|++|++++|.+++
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHEL----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHH----HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHH----HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            568888888888888655    3333    456788888888888887    4566667788888888888887664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.70  E-value=8.1e-05  Score=50.11  Aligned_cols=54  Identities=24%  Similarity=0.263  Sum_probs=37.8

Q ss_pred             EEEcCCCCCC--CccccccCCccccCC-CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCC
Q 043924           71 QLDLSFIGNW--DLKERYLNASLFTPF-QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN  137 (167)
Q Consensus        71 ~L~L~~~~l~--~l~~~~l~~~~~~~l-~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~  137 (167)
                      .++.++++++  .+..         .+ .+|++|+|++|.|+. +|..   .|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~---------~lp~~l~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT---------AFPVDTTELVLTGNNLTA-LPPG---LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS---------CCCTTCSEEECTTSCCSS-CCTT---TGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC---------CCCcCCCEEECCCCcCCc-cChh---hhhhccccCEEEecCCCee
Confidence            6778888776  4431         12 357888888888874 4543   2677888888888888774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.68  E-value=3e-05  Score=55.07  Aligned_cols=85  Identities=14%  Similarity=0.136  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCc-eeeecCcccccccCCC----CCCCEEeCcCC-cCCch
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNN-IAGCVENEGIERLSRL----SNLKMLDLSEN-LFNNS  139 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~-l~g~ip~~~~~~~~~l----~~L~~L~ls~N-~l~g~  139 (167)
                      .-+++.||+++..+++.+-     ..+..+++|++|+|+++. ++..--..    +..+    ++|++|+|+++ +++..
T Consensus        60 ~~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             CceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHH
Confidence            3469999999998765432     235679999999999985 65432122    5554    47999999997 48764


Q ss_pred             hhHhhhcCCCCCEEECcCCc
Q 043924          140 ILSSVAHLSSLTSLYLYSNR  159 (167)
Q Consensus       140 iP~~l~~l~~L~~L~L~~N~  159 (167)
                      ==..+.++++|++|+|++..
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHhcCCCCCEEECCCCC
Confidence            44568899999999998864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=0.00015  Score=55.72  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCcc-EEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLE-SLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~-~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      .+++.|++.++ +..++     ...|.++++|+ .+++.+ .++ .|++.   .|.++++|+.++++.|+++..-+..|.
T Consensus       250 ~~L~~l~l~~n-i~~I~-----~~aF~~~~~L~~~l~l~~-~l~-~I~~~---aF~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTIG-----QRVFSNCGRLAGTLELPA-SVT-AIEFG---AFMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             TTCCEEECCTT-CCEEC-----TTTTTTCTTCCEEEEECT-TCC-EECTT---TTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             CCCCEEECCcc-cceeh-----HHHhhCChhccEEEEEcc-cce-EEchh---hhhCCccCCEEEeCCCccCccchhhhc
Confidence            36778888876 55443     56788999999 999988 666 35433   299999999999999999976677899


Q ss_pred             cCCCCCEEEC
Q 043924          146 HLSSLTSLYL  155 (167)
Q Consensus       146 ~l~~L~~L~L  155 (167)
                      ++++|+.++.
T Consensus       319 ~~~~L~~ly~  328 (329)
T 3sb4_A          319 NGVPSKLIYK  328 (329)
T ss_dssp             TTCCCCEEEC
T ss_pred             CCcchhhhcc
Confidence            9999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.51  E-value=2.4e-05  Score=61.67  Aligned_cols=66  Identities=20%  Similarity=0.257  Sum_probs=38.9

Q ss_pred             CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCcce
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +++|++|++.+|.+.+..+.... ....+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            56666666666666543322200 113466777777777777653    3333455677777777777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.42  E-value=3.5e-05  Score=63.41  Aligned_cols=63  Identities=17%  Similarity=0.310  Sum_probs=33.1

Q ss_pred             CCCccEEEcCCCceeeecCccccccc-CCCCCCCEEeCcCCcCCchhhH-hhhcCCCCCEEECcCCcce
Q 043924           95 FQQLESLYLEYNNIAGCVENEGIERL-SRLSNLKMLDLSENLFNNSILS-SVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        95 l~~L~~L~Ls~n~l~g~ip~~~~~~~-~~l~~L~~L~ls~N~l~g~iP~-~l~~l~~L~~L~L~~N~ls  161 (167)
                      +++|++|++++|.+++..+..    + ..+++|++|++++|.+++..+. ....+++|++|++++|+++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~----l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHH----VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHH----HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             chhccEeeccCCCCcHHHHHH----HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            455556666655554432222    2 4456666666666666443333 2334566666666666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.35  E-value=6.1e-05  Score=62.01  Aligned_cols=65  Identities=15%  Similarity=0.085  Sum_probs=46.7

Q ss_pred             cCCCCccEEEcCCCceeeecCcccccccCC-CCCCCEEeCcCCcCCchhhHhh-hcCCCCCEEECcCCccee
Q 043924           93 TPFQQLESLYLEYNNIAGCVENEGIERLSR-LSNLKMLDLSENLFNNSILSSV-AHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~-l~~L~~L~ls~N~l~g~iP~~l-~~l~~L~~L~L~~N~lsG  162 (167)
                      ..+++|++|++++ .+++..+..    +.. +++|++|++++|.+++..+..+ ..+++|++|+|++|.+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~----l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEY----IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHH----HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             hhCCCccEEeecC-cccHHHHHH----HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            3466777777765 454433333    444 7889999999999987665555 678999999999998854

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.0016  Score=43.66  Aligned_cols=57  Identities=12%  Similarity=0.054  Sum_probs=39.5

Q ss_pred             cEEEcCCCcee-eecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           99 ESLYLEYNNIA-GCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        99 ~~L~Ls~n~l~-g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ..++.+++.++ ..+|..    +  .++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~----l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA----F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC----C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC----C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35677777775 345543    2  245788888888888655566778888888888888765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.56  E-value=0.0059  Score=48.46  Aligned_cols=64  Identities=9%  Similarity=0.100  Sum_probs=33.4

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      .|..+++|+.+++.+ .+. .|+..   .|.++++|+.+++..| ++..-+..|.++ +|+.+++.+|.+.
T Consensus       295 aF~~c~~L~~l~l~~-~i~-~I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          295 CLEGCPKLARFEIPE-SIR-ILGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTTTCTTCCEECCCT-TCC-EECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             HhhCCccCCeEEeCC-ceE-EEhhh---hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            344555555555552 233 23322   2556666666666443 443334456666 6777777666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.51  E-value=0.0015  Score=47.11  Aligned_cols=14  Identities=29%  Similarity=0.325  Sum_probs=7.4

Q ss_pred             CCccEEEcCCCcee
Q 043924           96 QQLESLYLEYNNIA  109 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~  109 (167)
                      +.|++|+|++|.|.
T Consensus        98 ~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           98 PSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECCSSBCC
T ss_pred             CccCeEecCCCcCC
Confidence            44555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.46  E-value=0.0021  Score=45.47  Aligned_cols=62  Identities=13%  Similarity=0.255  Sum_probs=47.0

Q ss_pred             CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCc-CCchhhHhhhcC----CCCCEEECcCCc-ce
Q 043924           96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENL-FNNSILSSVAHL----SSLTSLYLYSNR-LE  161 (167)
Q Consensus        96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~-l~g~iP~~l~~l----~~L~~L~L~~N~-ls  161 (167)
                      -.|+.||++++.++..    +...+..+++|++|+|+++. ++..-=..++.+    ++|++|+|+++. +|
T Consensus        61 ~~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            4699999999987643    22237899999999999985 776444556665    479999999874 55

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.31  E-value=0.0039  Score=44.88  Aligned_cols=92  Identities=14%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCC-CCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----h
Q 043924           66 TGRVIQLDLSFI-GNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----I  140 (167)
Q Consensus        66 ~~~v~~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----i  140 (167)
                      ...++.|+|+++ .+.+-+...+ ...+..-+.|+.|+|++|.+...--....+.+..-+.|++|+|++|+|...    +
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            567899999985 6643211001 112344578999999999997432222111244557899999999999853    3


Q ss_pred             hHhhhcCCCCCEEECcCC
Q 043924          141 LSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus       141 P~~l~~l~~L~~L~L~~N  158 (167)
                      -+.+..-+.|++|+|++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            345555677999999865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.11  E-value=0.0048  Score=48.42  Aligned_cols=69  Identities=19%  Similarity=0.155  Sum_probs=45.5

Q ss_pred             CCCCccEEEcCC--CceeeecCc-cccccc--CCCCCCCEEeCcCCcCCchhhHhhh---cCCCCCEEECcCCccee
Q 043924           94 PFQQLESLYLEY--NNIAGCVEN-EGIERL--SRLSNLKMLDLSENLFNNSILSSVA---HLSSLTSLYLYSNRLEG  162 (167)
Q Consensus        94 ~l~~L~~L~Ls~--n~l~g~ip~-~~~~~~--~~l~~L~~L~ls~N~l~g~iP~~l~---~l~~L~~L~L~~N~lsG  162 (167)
                      .+++|+.|+|+.  |...|.... .....+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+++
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            578888888753  222121000 000002  3578999999999999876655554   57899999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.05  E-value=0.01  Score=47.06  Aligned_cols=66  Identities=11%  Similarity=0.038  Sum_probs=47.9

Q ss_pred             CccccCCCCccEEEcCCCcee----eecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924           89 ASLFTPFQQLESLYLEYNNIA----GCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~n~l~----g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N  158 (167)
                      ...|..+++|+.+++.+|.+.    ..|+..   .|.++++|+.+++. |.++-.-...|.++++|+.+.+..|
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            455778888999988887764    124433   37888899999988 4566444557888899999988655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.57  E-value=0.1  Score=40.74  Aligned_cols=62  Identities=13%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N  158 (167)
                      .|.++.+|+.+++..+ ++ .|+..   .|.++++|+.+++..| ++..-...|.++++|+.+++..+
T Consensus       315 aF~~c~~L~~i~lp~~-v~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          315 AFESCTSLVSIDLPYL-VE-EIGKR---SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hhcCCCCCCEEEeCCc-cc-EEhHH---hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            3555666666666543 33 34332   2667777777777655 54333345777777777776544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.50  E-value=0.21  Score=38.93  Aligned_cols=64  Identities=14%  Similarity=0.231  Sum_probs=41.2

Q ss_pred             ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCc
Q 043924           90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNR  159 (167)
Q Consensus        90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~  159 (167)
                      ..|.++.+|+.+++..+ ++ .|...   .|.++++|+.+.+..+ ++..-...|.++++|+.+++.+|.
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~-~I~~~---aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-IT-QILDD---AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CC-EECTT---TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             eeecCCCCcCEEEeCCc-cc-EehHh---HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            34666777777777654 33 34332   2777888888888644 543334568888888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.94  E-value=0.14  Score=39.55  Aligned_cols=62  Identities=11%  Similarity=0.175  Sum_probs=35.6

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS  157 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~  157 (167)
                      .|..+++|+.+.+.++.++ .|+..   .|.++.+|+.++|..+ ++-.-...|.++++|+.+.+..
T Consensus       281 aF~~c~~L~~i~l~~~~i~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIE-TLEPR---VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccccc-eehhh---hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            3555666777777666655 23332   2667777777777543 4422234566677777666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.83  E-value=0.29  Score=38.18  Aligned_cols=65  Identities=15%  Similarity=0.245  Sum_probs=40.9

Q ss_pred             CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      ...|.++.+|+.+.+..+ ++ .|...   .|.++++|+.+++.+|...   -..+....+|+.+.+..|.+.
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~-~I~~~---aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VT-KIPES---AFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CC-BCCGG---GGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             HhHhhCCCCCCEEEECcc-cC-EEhHh---HhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence            345888999999999755 44 45543   3899999999999987643   246778889999998877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.76  E-value=0.58  Score=36.05  Aligned_cols=62  Identities=16%  Similarity=0.093  Sum_probs=42.6

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N  158 (167)
                      |..+..|+.+.+..+ +. .++..   .|.++++|+.+++.++.++..-...|.++.+|+.+.|..+
T Consensus       259 F~~~~~l~~i~l~~~-i~-~i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VK-TVPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTTCTTCCEEEECCC-CS-EECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cceeehhcccccccc-ce-ecccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            445556666666443 22 23332   2788899999999888887444567889999999998654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.20  E-value=1  Score=35.05  Aligned_cols=62  Identities=16%  Similarity=0.133  Sum_probs=44.2

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N  158 (167)
                      .|..+.+|+.+.+..+ +. .|+..   .|.++++|+.+++..+ ++..-...|.++++|+.+.+..|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~-~I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VK-FIGEE---AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccc-cc-eechh---hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            4556778888887654 43 34433   2888999999999754 65333567889999999998766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 20 CLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQ--WERVECSNTTG--RVIQLDLS 75
          C  Q++ ALL++K    +P  +L  W+     TDCC   W  V C   T   RV  LDLS
Sbjct: 3  CNPQDKQALLQIKKDLGNP-TTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 5e-04
 Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 9/146 (6%)

Query: 19  GCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQW----ERVECSNTTGRVIQLDL 74
           G +     +  +L        N L   +    A     +      +   + +        
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 75  SFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134
           +   +        +       + L  L L  N I G +       L++L  L  L++S N
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLHSLNVSFN 278

Query: 135 LFNNSILSSVAHLSSLTSLYLYSNRL 160
                I     +L         +N+ 
Sbjct: 279 NLCGEI-PQGGNLQRFDVSAYANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 92  FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLT 151
            +  + L  L L +NNI        I  +S L+ L+ L  + N    S +SS+A+L+++ 
Sbjct: 303 ISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSLANLTNIN 354

Query: 152 SLYLYSNRLEGNI 164
            L    N++    
Sbjct: 355 WLSAGHNQISDLT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 24  ERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLK 83
               L   ++    P   L    + E   +  Q E +   +    +  L L F    D+ 
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLE--LNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 84  ERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS 143
                    +   +L+ L+   N +        +  L+ L+N+  L    N  ++     
Sbjct: 324 P-------VSSLTKLQRLFFANNKV------SDVSSLANLTNINWLSAGHNQISDLT--P 368

Query: 144 VAHLSSLTSLYLYSN 158
           +A+L+ +T L L   
Sbjct: 369 LANLTRITQLGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 3e-04
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 43  HHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLY 102
             WV     T  C             +++L +S     D   R L   L  P   L  L+
Sbjct: 316 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 375

Query: 103 LEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA-----HLSSLTSLYLYS 157
           L   +++    +     L    +L+ LDLS N   ++ +  +          L  L LY 
Sbjct: 376 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 435

Query: 158 NRLEGNI 164
                 +
Sbjct: 436 IYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.001
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN----SILSSVAHLSSLTSL 153
           ++SL ++   ++   +    E L  L   +++ L +          I S++    +L  L
Sbjct: 4   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 154 YLYSNRLEG 162
            L SN L  
Sbjct: 61  NLRSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 13/75 (17%), Positives = 23/75 (30%)

Query: 89  ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS 148
           A L    QQ + + L+   +      +    L     L  L+L  N   +  +  V    
Sbjct: 20  AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79

Query: 149 SLTSLYLYSNRLEGN 163
              S  +    L+  
Sbjct: 80  QTPSCKIQKLSLQNC 94

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 98  LESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
              L L+ N I    + +       L NL  L L  N  +     + A L  L  LYL  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 158 NRLEG 162
           N+L+ 
Sbjct: 89  NQLKE 93

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 2/115 (1%)

Query: 43  HHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLY 102
                 +  +     ++++  +     I      +    L+  YL  +  T    L  L 
Sbjct: 97  LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT 156

Query: 103 LEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157
                     +   I  L+ L+ L+ L LS+N  ++  L ++A L +L  L L+S
Sbjct: 157 KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 34  FFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFT 93
             D     +       G ++           T    +    +         +  + +   
Sbjct: 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 94  PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSL 153
              +L +L  + N I        I  L+ L NL  + L  N  ++  +S +A+ S+L  +
Sbjct: 171 NLSKLTTLKADDNKI------SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIV 222

Query: 154 YL 155
            L
Sbjct: 223 TL 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.24
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.12
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.1
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.09
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.07
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.04
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.84
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.65
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.58
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.56
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.03
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.0
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.91
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.05

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=6.6e-27  Score=179.20  Aligned_cols=135  Identities=28%  Similarity=0.491  Sum_probs=105.5

Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCc--ceeeEEEeCC--CCCEEEEEcCCCCCCCccccccCCccccCC
Q 043924           20 CLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCC--QWERVECSNT--TGRVIQLDLSFIGNWDLKERYLNASLFTPF   95 (167)
Q Consensus        20 ~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c--~w~gv~C~~~--~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l   95 (167)
                      |.++|++||++||+.+.++ ..+++|..+.   |||  .|.||+|+..  ..||+.|+|+++.+.....  + ++.++++
T Consensus         3 c~~~e~~aLl~~k~~~~~~-~~l~sW~~~~---d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~--l-p~~l~~L   75 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNP-TTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--I-PSSLANL   75 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCC-GGGTTCCTTS---CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE--C-CGGGGGC
T ss_pred             CCHHHHHHHHHHHHHCCCC-CcCCCCCCCC---CCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCC--C-ChHHhcC
Confidence            7899999999999999665 4689998876   999  4999999863  3489999999998864321  1 4568889


Q ss_pred             CCccEEEcCC-CceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924           96 QQLESLYLEY-NNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus        96 ~~L~~L~Ls~-n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      ++|++|+|++ |.++|.+|+.    ++++++|++|++++|++++..|..+..+.+|+++++++|++.+.+|
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~----i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             ccccccccccccccccccccc----cccccccchhhhccccccccccccccchhhhcccccccccccccCc
Confidence            9999999986 8899999987    8888888888888888877666655666666666665555555555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=3.9e-15  Score=105.95  Aligned_cols=101  Identities=24%  Similarity=0.313  Sum_probs=65.9

Q ss_pred             CcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCC
Q 043924           54 CCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS  124 (167)
Q Consensus        54 ~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~  124 (167)
                      -|.|..|.|+.         ....++.|+|++|.++...    ....|..+++|++|++++|.+.+..+..    +..++
T Consensus         7 ~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~----~~~~f~~l~~L~~L~L~~N~i~~~~~~~----~~~~~   78 (192)
T d1w8aa_           7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRIS----SDGLFGRLPHLVKLELKRNQLTGIEPNA----FEGAS   78 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBC----CSCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred             EEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccc----cccccCCCceEeeeeccccccccccccc----ccccc
Confidence            45688999974         1346889999999886421    1334556666666666666666555554    66666


Q ss_pred             CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|++|++++|++++..|..|.++++|++|+|++|+|++
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccc
Confidence            66666666666665555556666666666666666664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=7.7e-13  Score=93.79  Aligned_cols=90  Identities=28%  Similarity=0.307  Sum_probs=78.5

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      -.+++.|++++|.+..+.     +..+..+++|++|++++|++++..|..    |.++++|++|+|++|+|++..|..|.
T Consensus        53 l~~L~~L~L~~N~i~~~~-----~~~~~~~~~L~~L~Ls~N~l~~l~~~~----F~~l~~L~~L~L~~N~l~~i~~~~f~  123 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIE-----PNAFEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             CTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSST
T ss_pred             CceEeeeecccccccccc-----ccccccccccceeeeccccccccCHHH----HhCCCcccccccCCccccccCHHHhc
Confidence            457899999999887543     566788999999999999999766666    89999999999999999988888899


Q ss_pred             cCCCCCEEECcCCcceecC
Q 043924          146 HLSSLTSLYLYSNRLEGNI  164 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG~i  164 (167)
                      .+++|++|+|++|.+.+..
T Consensus       124 ~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_         124 HLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TCTTCCEEECTTCCBCCSG
T ss_pred             CCccccccccccccccccc
Confidence            9999999999999998643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.35  E-value=6.7e-13  Score=100.36  Aligned_cols=71  Identities=27%  Similarity=0.283  Sum_probs=60.4

Q ss_pred             cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .+..++.++.+++++|.+.+.+|.     +..+++|++|++++|+|+|.+|+.++++++|++|+|++|+|+|+||+
T Consensus       216 ~~~~~~~l~~l~~~~~~l~~~~~~-----~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         216 LFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccccccccccccc-----cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            355677888888888888877654     78888999999999999999999999999999999999999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.8e-12  Score=89.30  Aligned_cols=97  Identities=18%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             cceeeEEEeC-----------CCCCEEEEEcCCCC-CCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCC
Q 043924           55 CQWERVECSN-----------TTGRVIQLDLSFIG-NWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSR  122 (167)
Q Consensus        55 c~w~gv~C~~-----------~~~~v~~L~L~~~~-l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~  122 (167)
                      +.+++++|..           ...++++|++.+++ ++.+.     +..|..+++|+.|++++|+++..-|..    |..
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-----~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~   78 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDA----FHF   78 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSSCCCEECTTG----GGS
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC-----chhhccccccCcceeeccccCCccccc----ccc
Confidence            3578899974           12467888987664 66443     456888999999999999998765665    899


Q ss_pred             CCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924          123 LSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       123 l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +++|++|+|++|+++ .+|.......+|++|+|++|.|.
T Consensus        79 l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          79 TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            999999999999999 45554444457999999999885

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.5e-12  Score=85.24  Aligned_cols=84  Identities=26%  Similarity=0.266  Sum_probs=69.4

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchh-hHhhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSI-LSSVA  145 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~i-P~~l~  145 (167)
                      ..++.|++++|.+..+      +..+..+++|++|++++|.+++ +|.     +..+++|++|++++|+++... ...+.
T Consensus        20 ~~L~~L~ls~N~l~~l------p~~~~~l~~L~~L~l~~N~i~~-l~~-----~~~l~~L~~L~l~~N~i~~~~~~~~l~   87 (124)
T d1dcea3          20 LLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDNALEN-VDG-----VANLPRLQELLLCNNRLQQSAAIQPLV   87 (124)
T ss_dssp             TTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             CCCCEEECCCCccCcc------hhhhhhhhcccccccccccccc-cCc-----cccccccCeEECCCCccCCCCCchhhc
Confidence            4688999999988765      2347789999999999999984 443     889999999999999998532 35688


Q ss_pred             cCCCCCEEECcCCccee
Q 043924          146 HLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       146 ~l~~L~~L~L~~N~lsG  162 (167)
                      .+++|++|++++|+++.
T Consensus        88 ~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          88 SCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GCTTCCEEECTTSGGGG
T ss_pred             CCCCCCEEECCCCcCCc
Confidence            99999999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.3e-12  Score=84.08  Aligned_cols=78  Identities=28%  Similarity=0.326  Sum_probs=68.1

Q ss_pred             EEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCC
Q 043924           71 QLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSL  150 (167)
Q Consensus        71 ~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L  150 (167)
                      .|+|++|+++.+.       .+..+++|++|++++|.++ .+|+.    ++.+++|++|++++|++++ +| .++++++|
T Consensus         2 ~L~Ls~n~l~~l~-------~l~~l~~L~~L~ls~N~l~-~lp~~----~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L   67 (124)
T d1dcea3           2 VLHLAHKDLTVLC-------HLEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANLPRL   67 (124)
T ss_dssp             EEECTTSCCSSCC-------CGGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTCSSC
T ss_pred             EEEcCCCCCCCCc-------ccccCCCCCEEECCCCccC-cchhh----hhhhhcccccccccccccc-cC-cccccccc
Confidence            5899999987653       2677999999999999998 57876    8999999999999999995 55 48999999


Q ss_pred             CEEECcCCccee
Q 043924          151 TSLYLYSNRLEG  162 (167)
Q Consensus       151 ~~L~L~~N~lsG  162 (167)
                      ++|++++|+++.
T Consensus        68 ~~L~l~~N~i~~   79 (124)
T d1dcea3          68 QELLLCNNRLQQ   79 (124)
T ss_dssp             CEEECCSSCCCS
T ss_pred             CeEECCCCccCC
Confidence            999999999983

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.6e-11  Score=84.94  Aligned_cols=82  Identities=26%  Similarity=0.253  Sum_probs=48.1

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh--Hhhh
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL--SSVA  145 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP--~~l~  145 (167)
                      +++.|+|++|.+..+.       .+..+++|++|++++|.++...+..    +..+++|++|++++|+++. ++  ..+.
T Consensus        42 ~L~~L~Ls~N~i~~l~-------~~~~l~~L~~L~ls~N~i~~l~~~~----~~~l~~L~~L~L~~N~i~~-~~~l~~l~  109 (162)
T d1a9na_          42 QFDAIDFSDNEIRKLD-------GFPLLRRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLVE-LGDLDPLA  109 (162)
T ss_dssp             CCSEEECCSSCCCEEC-------CCCCCSSCCEEECCSSCCCEECSCH----HHHCTTCCEEECCSCCCCC-GGGGGGGG
T ss_pred             cCCEEECCCCCCCccC-------CcccCcchhhhhcccccccCCCccc----cccccccccceeccccccc-cccccccc
Confidence            4555555555554331       1455666777777777666432222    4456677777777777663 22  3466


Q ss_pred             cCCCCCEEECcCCcce
Q 043924          146 HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       146 ~l~~L~~L~L~~N~ls  161 (167)
                      .+++|++|++++|.++
T Consensus       110 ~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_         110 SLKSLTYLCILRNPVT  125 (162)
T ss_dssp             GCTTCCEEECCSSGGG
T ss_pred             cccccchhhcCCCccc
Confidence            6777777777777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=91.09  Aligned_cols=88  Identities=22%  Similarity=0.167  Sum_probs=65.6

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      +++.|++++|.+..+     ++..|..+++|+++++++|.+++..|..    |..+++|++|++++|++++..|..|+.+
T Consensus       154 ~L~~L~l~~N~l~~l-----~~~~f~~l~~L~~l~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         154 NLTHLFLHGNRISSV-----PERAFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             TCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             chhhcccccCccccc-----chhhhccccccchhhhhhccccccChhH----hhhhhhcccccccccccccccccccccc
Confidence            344555555554422     2445677888888888888888777766    8888888888888888888778888888


Q ss_pred             CCCCEEECcCCcceecC
Q 043924          148 SSLTSLYLYSNRLEGNI  164 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG~i  164 (167)
                      ++|++|++++|.+.+..
T Consensus       225 ~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         225 RALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TTCCEEECCSSCEECSG
T ss_pred             cccCEEEecCCCCCCCc
Confidence            88888888888887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.8e-11  Score=82.45  Aligned_cols=85  Identities=20%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             EEEcCCCCCCCccccccCCccccCCCCccEEEcCCCc-eeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCC
Q 043924           71 QLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNN-IAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS  149 (167)
Q Consensus        71 ~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~-l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~  149 (167)
                      .++.+++++.+.      +..+..+++|++|++.+|+ ++..-+..    |.++++|+.|++++|+++...|..|..+++
T Consensus        12 ~l~c~~~~~~~~------p~~l~~l~~l~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3          12 GLRCTRDGALDS------LHHLPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CEECCSSCCCTT------TTTSCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             eEEecCCCCccC------cccccCccccCeeecCCCccccccCchh----hccccccCcceeeccccCCccccccccccc
Confidence            477788776543      2346678999999998764 76433344    899999999999999999877888999999


Q ss_pred             CCEEECcCCcceecCCC
Q 043924          150 LTSLYLYSNRLEGNIDV  166 (167)
Q Consensus       150 L~~L~L~~N~lsG~iP~  166 (167)
                      |++|+|++|+|+ .+|.
T Consensus        82 L~~L~Ls~N~l~-~l~~   97 (156)
T d2ifga3          82 LSRLNLSFNALE-SLSW   97 (156)
T ss_dssp             CCEEECCSSCCS-CCCS
T ss_pred             ccceeccCCCCc-ccCh
Confidence            999999999998 6664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=8.8e-11  Score=87.41  Aligned_cols=88  Identities=25%  Similarity=0.274  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC
Q 043924           69 VIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS  148 (167)
Q Consensus        69 v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~  148 (167)
                      +..+++++|.++.+.     ...|..+++|+.|++++|.+++..+..    |.++++|+++++++|++++..|..|.+++
T Consensus       131 L~~l~l~~N~l~~i~-----~~~f~~~~~L~~L~l~~N~l~~l~~~~----f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         131 LQYLYLQDNALQALP-----DDTFRDLGNLTHLFLHGNRISSVPERA----FRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             CCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             cchhhhccccccccC-----hhHhccccchhhcccccCcccccchhh----hccccccchhhhhhccccccChhHhhhhh
Confidence            455555555554332     345777889999999999998766665    88999999999999999988899999999


Q ss_pred             CCCEEECcCCcceecCC
Q 043924          149 SLTSLYLYSNRLEGNID  165 (167)
Q Consensus       149 ~L~~L~L~~N~lsG~iP  165 (167)
                      +|++|++++|++++..|
T Consensus       202 ~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         202 RLMTLYLFANNLSALPT  218 (284)
T ss_dssp             TCCEEECCSSCCSCCCH
T ss_pred             hcccccccccccccccc
Confidence            99999999999986543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.5e-11  Score=80.88  Aligned_cols=84  Identities=24%  Similarity=0.173  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA  145 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~  145 (167)
                      ..++..|+|++|+++.+.      ..+..+++|+.|++++|.++ .++.     +..+++|++|++++|+++...+..+.
T Consensus        17 ~~~lr~L~L~~n~I~~i~------~~~~~l~~L~~L~Ls~N~i~-~l~~-----~~~l~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIE------NLGATLDQFDAIDFSDNEIR-KLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             TTSCEEEECTTSCCCSCC------CGGGGTTCCSEEECCSSCCC-EECC-----CCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             cCcCcEEECCCCCCCccC------ccccccccCCEEECCCCCCC-ccCC-----cccCcchhhhhcccccccCCCccccc
Confidence            346889999999998763      23566899999999999998 4543     88999999999999999965555678


Q ss_pred             cCCCCCEEECcCCcce
Q 043924          146 HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       146 ~l~~L~~L~L~~N~ls  161 (167)
                      .+++|++|++++|+++
T Consensus        85 ~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          85 ALPDLTELILTNNSLV  100 (162)
T ss_dssp             HCTTCCEEECCSCCCC
T ss_pred             cccccccceecccccc
Confidence            8999999999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-10  Score=85.55  Aligned_cols=85  Identities=28%  Similarity=0.215  Sum_probs=63.0

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      ++..+++++|.+..+     ++..+..++.++++++++|++++..+..    +..+++|++|+|++|+|+ .+|+.+..+
T Consensus       125 ~l~~L~l~~n~l~~l-----~~~~~~~l~~l~~l~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         125 ELQELYLKGNELKTL-----PPGLLTPTPKLEKLSLANNNLTELPAGL----LNGLENLDTLLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             TCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTTSCCSCCCTTT----TTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             cccccccccccccee-----ccccccccccchhcccccccccccCccc----cccccccceeecccCCCc-ccChhHCCC
Confidence            344555555544432     2445667888888888888888665555    788888888999888888 788888888


Q ss_pred             CCCCEEECcCCccee
Q 043924          148 SSLTSLYLYSNRLEG  162 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG  162 (167)
                      ++|++|+|++|.+..
T Consensus       195 ~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         195 HLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCCSEEECCSCCBCC
T ss_pred             CCCCEEEecCCCCCC
Confidence            888889998888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.8e-10  Score=83.99  Aligned_cols=97  Identities=24%  Similarity=0.194  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCCCCCCcccc------------------ccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924           66 TGRVIQLDLSFIGNWDLKER------------------YLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK  127 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~------------------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~  127 (167)
                      -..++.|++++|.+......                  .+....+..+.++++|++++|.+....+..    +..+++|+
T Consensus        76 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~----~~~l~~l~  151 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLE  151 (266)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccc----ccccccch
Confidence            35577778887776432110                  111233455677777777777777544443    77889999


Q ss_pred             EEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCCC
Q 043924          128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDVK  167 (167)
Q Consensus       128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~~  167 (167)
                      ++++++|++++..+..|..+++|++|+|++|+|+ .||++
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~  190 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             hcccccccccccCccccccccccceeecccCCCc-ccChh
Confidence            9999999999888888999999999999999999 88863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.04  E-value=2.5e-10  Score=85.56  Aligned_cols=65  Identities=22%  Similarity=0.371  Sum_probs=38.1

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +..++.+++|++++|.+.+..+..    +..+++|++|+|++|+++ .+|..+.++++|++|+|++|+++
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~----~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTT----GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             hhcccccccccccccccccccccc----ccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            445555666666666665544443    555666666666666665 44555666666666666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=9.5e-10  Score=82.27  Aligned_cols=97  Identities=24%  Similarity=0.304  Sum_probs=72.5

Q ss_pred             CcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCC
Q 043924           54 CCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS  124 (167)
Q Consensus        54 ~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~  124 (167)
                      -|.|++|.|+.         ....++.|+|++|.++.+.     +..|..+++|++|++++|.+....|..    |..++
T Consensus         9 ~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~-----~~~f~~l~~L~~L~l~~n~~~~i~~~~----f~~l~   79 (305)
T d1xkua_           9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-----DGDFKNLKNLHTLILINNKISKISPGA----FAPLV   79 (305)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred             EecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcC-----hhHhhccccccccccccccccccchhh----hhCCC
Confidence            36799999974         1355788888888887553     345777888888888888888655666    88888


Q ss_pred             CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      +|++|++++|+++ .+|..  ....++.|++.+|.+.+
T Consensus        80 ~L~~L~l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          80 KLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEITK  114 (305)
T ss_dssp             TCCEEECCSSCCS-BCCSS--CCTTCCEEECCSSCCCB
T ss_pred             ccCEecccCCccC-cCccc--hhhhhhhhhccccchhh
Confidence            8888888888887 45543  33567888888887764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.94  E-value=8.6e-10  Score=84.31  Aligned_cols=76  Identities=24%  Similarity=0.377  Sum_probs=47.7

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      .++.++++++.++++.       .+..+++|++|++++|.+++ ++ .    +..+++|++|++++|++++..|  +.++
T Consensus       308 ~l~~L~ls~n~l~~l~-------~l~~l~~L~~L~L~~n~l~~-l~-~----l~~l~~L~~L~l~~N~l~~l~~--l~~l  372 (384)
T d2omza2         308 NLTYLTLYFNNISDIS-------PVSSLTKLQRLFFANNKVSD-VS-S----LANLTNINWLSAGHNQISDLTP--LANL  372 (384)
T ss_dssp             TCSEEECCSSCCSCCG-------GGGGCTTCCEEECCSSCCCC-CG-G----GGGCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred             ccCeEECCCCCCCCCc-------ccccCCCCCEEECCCCCCCC-Ch-h----HcCCCCCCEEECCCCcCCCChh--hccC
Confidence            4455566666554332       14556777777777777663 33 3    6667777777777777775544  6677


Q ss_pred             CCCCEEECcCC
Q 043924          148 SSLTSLYLYSN  158 (167)
Q Consensus       148 ~~L~~L~L~~N  158 (167)
                      ++|++|+|++|
T Consensus       373 ~~L~~L~L~~N  383 (384)
T d2omza2         373 TRITQLGLNDQ  383 (384)
T ss_dssp             TTCSEEECCCE
T ss_pred             CCCCEeeCCCC
Confidence            77777777766

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.1e-09  Score=77.73  Aligned_cols=101  Identities=17%  Similarity=0.287  Sum_probs=81.1

Q ss_pred             CcceeeEEEeCC---------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCC
Q 043924           54 CCQWERVECSNT---------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS  124 (167)
Q Consensus        54 ~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~  124 (167)
                      -|..+.|.|...         ...++.|++++|.+..+.     ...|.++++|++|++++|.+...+|..   .|..++
T Consensus         7 ~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~-----~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~   78 (242)
T d1xwdc1           7 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQ-----KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLP   78 (242)
T ss_dssp             EECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEEC-----TTTTTTCTTCCEEEEESCTTCCEECSS---SEESCT
T ss_pred             CCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccC-----hhHhhccchhhhhhhccccccceeecc---cccccc
Confidence            356778899741         246889999999887543     456788999999999999998777654   278889


Q ss_pred             CCCEEeCc-CCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          125 NLKMLDLS-ENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       125 ~L~~L~ls-~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      .++++++. .|++....+..|.++++|+++++++|.++.
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcc
Confidence            99999876 477887777889999999999999998873

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=4.2e-09  Score=80.35  Aligned_cols=82  Identities=20%  Similarity=0.304  Sum_probs=69.9

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      ..++.|+++++++.++.       .+..+++|++|++++|.+++ +|+     ++++++|++|++++|++++..|  +++
T Consensus        44 ~~l~~L~l~~~~I~~l~-------gl~~L~nL~~L~Ls~N~l~~-l~~-----l~~L~~L~~L~L~~n~i~~i~~--l~~  108 (384)
T d2omza2          44 DQVTTLQADRLGIKSID-------GVEYLNNLTQINFSNNQLTD-ITP-----LKNLTKLVDILMNNNQIADITP--LAN  108 (384)
T ss_dssp             TTCCEEECCSSCCCCCT-------TGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             CCCCEEECCCCCCCCcc-------ccccCCCCCEEeCcCCcCCC-Ccc-----ccCCcccccccccccccccccc--ccc
Confidence            46899999999887653       25679999999999999986 443     8999999999999999996443  889


Q ss_pred             CCCCCEEECcCCcceec
Q 043924          147 LSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG~  163 (167)
                      +++|+.|++++|.+++.
T Consensus       109 l~~L~~L~~~~~~~~~~  125 (384)
T d2omza2         109 LTNLTGLTLFNNQITDI  125 (384)
T ss_dssp             CTTCCEEECCSSCCCCC
T ss_pred             ccccccccccccccccc
Confidence            99999999999998864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=1.5e-08  Score=72.10  Aligned_cols=80  Identities=31%  Similarity=0.426  Sum_probs=44.8

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL  147 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l  147 (167)
                      +++.|++++|.++++..       +..+++|++|++++|.+++ +|.     +..+++|+.|++++|.+.. ++ .+.++
T Consensus        69 ~L~~L~L~~n~i~~l~~-------~~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~l~~~~~~~-~~-~l~~l  133 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDENKVKD-LSS-----LKDLKKLKSLSLEHNGISD-IN-GLVHL  133 (210)
T ss_dssp             TCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC-GGG-----GTTCTTCCEEECTTSCCCC-CG-GGGGC
T ss_pred             CCCEEeCCCccccCccc-------cccCccccccccccccccc-ccc-----ccccccccccccccccccc-cc-ccccc
Confidence            45566666665544321       3455666666666666653 332     5566666666666666542 22 35566


Q ss_pred             CCCCEEECcCCccee
Q 043924          148 SSLTSLYLYSNRLEG  162 (167)
Q Consensus       148 ~~L~~L~L~~N~lsG  162 (167)
                      ++++.+++++|.+++
T Consensus       134 ~~l~~l~~~~n~l~~  148 (210)
T d1h6ta2         134 PQLESLYLGNNKITD  148 (210)
T ss_dssp             TTCCEEECCSSCCCC
T ss_pred             ccccccccccccccc
Confidence            666666666666553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=1.6e-08  Score=71.28  Aligned_cols=80  Identities=25%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.|++++|.++++.       .+..+++|++|++++|.+.. ++.     +.+++.|++|++++|.+....  .+..
T Consensus        62 ~nL~~L~Ls~N~l~~~~-------~l~~l~~L~~L~l~~n~~~~-~~~-----l~~l~~L~~L~l~~~~~~~~~--~~~~  126 (199)
T d2omxa2          62 NNLTQINFSNNQLTDIT-------PLKNLTKLVDILMNNNQIAD-ITP-----LANLTNLTGLTLFNNQITDID--PLKN  126 (199)
T ss_dssp             TTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSSCCCC-CGG-----GTTCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             CCcCcCccccccccCcc-------cccCCccccccccccccccc-ccc-----ccccccccccccccccccccc--ccch
Confidence            35666666666665432       15567777777777776652 332     667777777777777776432  3667


Q ss_pred             CCCCCEEECcCCcce
Q 043924          147 LSSLTSLYLYSNRLE  161 (167)
Q Consensus       147 l~~L~~L~L~~N~ls  161 (167)
                      +++|+.|++++|+++
T Consensus       127 l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         127 LTNLNRLELSSNTIS  141 (199)
T ss_dssp             CTTCSEEECCSSCCC
T ss_pred             hhhhHHhhhhhhhhc
Confidence            788888888888776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=1.3e-08  Score=73.04  Aligned_cols=62  Identities=23%  Similarity=0.361  Sum_probs=36.8

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +...++|++|++++|.+.+..  .    +..+++|++|++++|++++ +|. ++++++|++|+|++|+++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~--~----l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLT--P----LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G----GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC
T ss_pred             hccccccccccccccccccch--h----hcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC
Confidence            344566666666666665321  1    5566666666666666664 332 566666666666666665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=5e-08  Score=68.66  Aligned_cols=88  Identities=23%  Similarity=0.304  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCCCCCcccc---------ccC------CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeC
Q 043924           67 GRVIQLDLSFIGNWDLKER---------YLN------ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL  131 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~---------~l~------~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~l  131 (167)
                      .+++.++++++.+..+...         .+.      ...+..+++|+.|++++|.+.. ++ .    +..+++|++|++
T Consensus        84 ~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~----l~~~~~L~~L~l  157 (199)
T d2omxa2          84 TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD-IS-A----LSGLTSLQQLNF  157 (199)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CG-G----GTTCTTCSEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhHHhhhhhhhhcc-cc-c----cccccccccccc
Confidence            4577788877766543321         000      1235668889999999998863 33 3    788999999999


Q ss_pred             cCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924          132 SENLFNNSILSSVAHLSSLTSLYLYSNRLEG  162 (167)
Q Consensus       132 s~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG  162 (167)
                      ++|++++. + .++++++|++|++++|+++.
T Consensus       158 ~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         158 SSNQVTDL-K-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccCC-c-cccCCCCCCEEECCCCCCCC
Confidence            99999864 3 38899999999999999884

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.65  E-value=4.5e-08  Score=70.08  Aligned_cols=76  Identities=22%  Similarity=0.283  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.++++++.+...       ..+..+++|+.|++++|.+++ +++     +..+++|++|++++|++++ +|. +.+
T Consensus       151 ~~L~~L~l~~n~~~~~-------~~l~~l~~L~~L~Ls~n~l~~-l~~-----l~~l~~L~~L~Ls~N~lt~-i~~-l~~  215 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDL-------TPLANLSKLTTLKADDNKISD-ISP-----LASLPNLIEVHLKNNQISD-VSP-LAN  215 (227)
T ss_dssp             TTCCEEECCSSCCCCC-------GGGTTCTTCCEEECCSSCCCC-CGG-----GGGCTTCCEEECTTSCCCB-CGG-GTT
T ss_pred             cccccccccccccccc-------hhhcccccceecccCCCccCC-Chh-----hcCCCCCCEEECcCCcCCC-Ccc-ccc
Confidence            3455666666655432       236789999999999999985 443     7899999999999999996 443 899


Q ss_pred             CCCCCEEECcC
Q 043924          147 LSSLTSLYLYS  157 (167)
Q Consensus       147 l~~L~~L~L~~  157 (167)
                      +++|++|++++
T Consensus       216 l~~L~~L~lsn  226 (227)
T d1h6ua2         216 TSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEEEEE
T ss_pred             CCCCCEEEeeC
Confidence            99999999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.58  E-value=5.1e-10  Score=79.51  Aligned_cols=89  Identities=27%  Similarity=0.275  Sum_probs=54.0

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc------------------ccccCCCCCCCE
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG------------------IERLSRLSNLKM  128 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~------------------~~~~~~l~~L~~  128 (167)
                      .+++.|+|++|.++.+..       +..+++|++|++++|.++ .+|...                  .+.+..+++|++
T Consensus        48 ~~L~~L~Ls~n~I~~i~~-------l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~  119 (198)
T d1m9la_          48 KACKHLALSTNNIEKISS-------LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV  119 (198)
T ss_dssp             TTCCEEECSEEEESCCCC-------HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSE
T ss_pred             cccceeECcccCCCCccc-------ccCCccccChhhcccccc-cccccccccccccccccccccccccccccccccccc
Confidence            456777777776654421       344555666666665554 233210                  011455677888


Q ss_pred             EeCcCCcCCchhh-HhhhcCCCCCEEECcCCcceec
Q 043924          129 LDLSENLFNNSIL-SSVAHLSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       129 L~ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~lsG~  163 (167)
                      |++++|+++.... ..+..+++|++|++++|+++..
T Consensus       120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccchhccccccccccCCCccceeecCCCccccC
Confidence            8888888874321 4577888888888888877643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.57  E-value=5e-10  Score=79.56  Aligned_cols=85  Identities=24%  Similarity=0.253  Sum_probs=57.5

Q ss_pred             CCEEEEEcCCCCCCCcccc----------ccCC------ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEe
Q 043924           67 GRVIQLDLSFIGNWDLKER----------YLNA------SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLD  130 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~----------~l~~------~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~  130 (167)
                      .+++.|++++|.+..+...          .+..      +.+..+++|++|++++|.++. ++.  ...+..+++|++|+
T Consensus        70 ~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~-~~~--~~~l~~l~~L~~L~  146 (198)
T d1m9la_          70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN-WGE--IDKLAALDKLEDLL  146 (198)
T ss_dssp             TTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEEECCC-HHH--HHHHTTTTTCSEEE
T ss_pred             ccccChhhcccccccccccccccccccccccccccccccccccccccccccccccchhcc-ccc--cccccCCCccceee
Confidence            3577788887766544321          1111      124457789999999998874 221  01288999999999


Q ss_pred             CcCCcCCchhhH----------hhhcCCCCCEEE
Q 043924          131 LSENLFNNSILS----------SVAHLSSLTSLY  154 (167)
Q Consensus       131 ls~N~l~g~iP~----------~l~~l~~L~~L~  154 (167)
                      +++|.+....+.          .+..+++|++||
T Consensus       147 L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999998754443          267899999987

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=1.2e-07  Score=67.21  Aligned_cols=91  Identities=32%  Similarity=0.377  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCCCCCCcccc---------ccC------CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEe
Q 043924           66 TGRVIQLDLSFIGNWDLKER---------YLN------ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLD  130 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~---------~l~------~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~  130 (167)
                      -.+++.|++++|.++.+...         .+.      ...+..++.++.+++++|.+++.  ..    +..+++|++++
T Consensus        89 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~--~~----~~~l~~L~~l~  162 (210)
T d1h6ta2          89 LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLS  162 (210)
T ss_dssp             CTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG----GGGCTTCSEEE
T ss_pred             Ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc----ccccccccccc
Confidence            35688888888887654321         000      01123344455555555554431  11    56678888888


Q ss_pred             CcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924          131 LSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID  165 (167)
Q Consensus       131 ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP  165 (167)
                      +++|++++. ++ +.++++|+.|++++|+++ .||
T Consensus       163 l~~n~l~~i-~~-l~~l~~L~~L~Ls~N~i~-~l~  194 (210)
T d1h6ta2         163 LEDNQISDI-VP-LAGLTKLQNLYLSKNHIS-DLR  194 (210)
T ss_dssp             CCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-BCG
T ss_pred             ccccccccc-cc-ccCCCCCCEEECCCCCCC-CCh
Confidence            888888853 33 788888999999988887 344

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.40  E-value=3.6e-07  Score=68.23  Aligned_cols=78  Identities=24%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH  146 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~  146 (167)
                      .+++.|++++|.++.++.         .+.+|+.|++++|.++ .++.     +  .+.|++|++++|.++ .+|. ++.
T Consensus        58 ~~L~~L~Ls~N~l~~lp~---------~~~~L~~L~l~~n~l~-~l~~-----l--p~~L~~L~L~~n~l~-~lp~-~~~  118 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPE---------LPQSLKSLLVDNNNLK-ALSD-----L--PPLLEYLGVSNNQLE-KLPE-LQN  118 (353)
T ss_dssp             TTCSEEECCSSCCSSCCC---------CCTTCCEEECCSSCCS-CCCS-----C--CTTCCEEECCSSCCS-SCCC-CTT
T ss_pred             CCCCEEECCCCCCccccc---------chhhhhhhhhhhcccc-hhhh-----h--ccccccccccccccc-cccc-hhh
Confidence            456667777776654421         1356777777777765 2332     1  135889999999987 5664 678


Q ss_pred             CCCCCEEECcCCcceec
Q 043924          147 LSSLTSLYLYSNRLEGN  163 (167)
Q Consensus       147 l~~L~~L~L~~N~lsG~  163 (167)
                      +++|++|++++|.+++.
T Consensus       119 l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         119 SSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             CTTCCEEECCSSCCSCC
T ss_pred             hccceeecccccccccc
Confidence            89999999998887743

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=7.4e-08  Score=65.84  Aligned_cols=80  Identities=19%  Similarity=0.172  Sum_probs=38.0

Q ss_pred             CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh------
Q 043924           68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL------  141 (167)
Q Consensus        68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP------  141 (167)
                      .++.|+|++|.++.+...   ...+..+++|+.|++++|.++. +++.   .......|+.|++++|.++....      
T Consensus        66 ~L~~L~Ls~N~i~~l~~~---~~~~~~l~~L~~L~Ls~N~i~~-l~~l---~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDM---SSIVQKAPNLKILNLSGNELKS-EREL---DKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGG---GTHHHHSTTCCCCCCTTSCCCC-GGGH---HHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             CCCEeeCCCccccCCchh---HHHHhhCCcccccccccCcccc-chhh---hhhhccccceeecCCCCcCcCcccchhHH
Confidence            455566666665544321   1123345566666666666652 2221   01222345666666666654322      


Q ss_pred             -HhhhcCCCCCEEE
Q 043924          142 -SSVAHLSSLTSLY  154 (167)
Q Consensus       142 -~~l~~l~~L~~L~  154 (167)
                       ..+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             1234556666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.20  E-value=2.3e-06  Score=63.75  Aligned_cols=60  Identities=20%  Similarity=0.094  Sum_probs=49.5

Q ss_pred             CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .+++|++|++++|.++ .+|..       +++|+.|++++|+++ .+|.   .+++|++|++++|+++ .+|.
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~~-------~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPAL-------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCCC-------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             cCCCCCEEECCCCccC-ccccc-------cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCc
Confidence            3678999999999998 56653       468999999999998 6775   3568999999999998 6663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=9.6e-08  Score=65.26  Aligned_cols=68  Identities=25%  Similarity=0.269  Sum_probs=53.6

Q ss_pred             cCCCCccEEEcCCCceeee--cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecC
Q 043924           93 TPFQQLESLYLEYNNIAGC--VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI  164 (167)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~g~--ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~i  164 (167)
                      ..++.|++|++++|+++..  ++..    +..+++|+.|++++|+++..-+-.+.+..+|+.|++++|.++...
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~----~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTH----HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHH----HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            4589999999999999853  3333    677899999999999999644434445567999999999998654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.9e-07  Score=69.61  Aligned_cols=70  Identities=20%  Similarity=0.226  Sum_probs=48.9

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccC-CCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLS-RLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~-~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +..+++|++|||++|.++..--......+. ...+|++|++++|+++..    ++..+..+++|++|++++|+++
T Consensus        51 L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            456788999999999885210001000122 235799999999998753    5667788899999999999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.2e-05  Score=57.24  Aligned_cols=64  Identities=17%  Similarity=0.096  Sum_probs=44.7

Q ss_pred             CccEEEcCCCceeeecCcccccccCCCCCCCEE-eCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924           97 QLESLYLEYNNIAGCVENEGIERLSRLSNLKML-DLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV  166 (167)
Q Consensus        97 ~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L-~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~  166 (167)
                      .++.|++++|.++. ++..    .....+++.+ ++++|+++...+..|.++++|++|+|++|+++ .+|.
T Consensus       154 ~l~~L~l~~n~l~~-i~~~----~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         154 ESVILWLNKNGIQE-IHNC----AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             SCEEEECCSSCCCE-ECTT----TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             cceeeecccccccc-cccc----cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            67788888888874 4443    3344554444 56777887443456788899999999999888 5664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.3e-06  Score=63.16  Aligned_cols=84  Identities=27%  Similarity=0.219  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcC-CcCCch-hhHhh
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSE-NLFNNS-ILSSV  144 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~-N~l~g~-iP~~l  144 (167)
                      .+++.++++++.+..-.   + ...+..+++|++|+++++.+++..+..    +..+++|++|++++ +.++.. +....
T Consensus        46 ~~L~~LdLs~~~i~~~~---l-~~l~~~c~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          46 FRVQHMDLSNSVIEVST---L-HGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             BCCCEEECTTCEECHHH---H-HHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             CCCCEEECCCCccCHHH---H-HHHHHhCCCcccccccccCCCcHHHHH----HhcCCCCcCccccccccccccccchhh
Confidence            46788888877653211   0 123567889999999999888776666    88888999999988 466642 34445


Q ss_pred             hcCCCCCEEECcCC
Q 043924          145 AHLSSLTSLYLYSN  158 (167)
Q Consensus       145 ~~l~~L~~L~L~~N  158 (167)
                      ..+++|++|++++.
T Consensus       118 ~~~~~L~~L~ls~c  131 (284)
T d2astb2         118 SSCSRLDELNLSWC  131 (284)
T ss_dssp             HHCTTCCEEECCCC
T ss_pred             HHHHhccccccccc
Confidence            67889999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.90  E-value=2.9e-06  Score=63.93  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=17.0

Q ss_pred             CCCEEeCcCCcCCch----hhHhhh-cCCCCCEEECcCCcce
Q 043924          125 NLKMLDLSENLFNNS----ILSSVA-HLSSLTSLYLYSNRLE  161 (167)
Q Consensus       125 ~L~~L~ls~N~l~g~----iP~~l~-~l~~L~~L~L~~N~ls  161 (167)
                      .|++|++++|+++..    +...+. ++++|++|+|++|+|+
T Consensus       274 ~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            455555555555431    222221 3445555555555553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.6e-06  Score=66.67  Aligned_cols=90  Identities=19%  Similarity=0.099  Sum_probs=47.7

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee----cCcccccccC-CCCCCCEEeCcCCcCCc---
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC----VENEGIERLS-RLSNLKMLDLSENLFNN---  138 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~-~l~~L~~L~ls~N~l~g---  138 (167)
                      ..+..++++++.+...+...+ ...+...++|++|+|++|.++..    ++..    +. ..+.|++|+|++|+|+.   
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l-~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~----l~~~~~~L~~L~Ls~n~i~~~~~  386 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHF-SSVLAQNRFLLELQISNNRLEDAGVRELCQG----LGQPGSVLRVLWLADCDVSDSSC  386 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHH-HHHHHHCSSCCEEECCSSBCHHHHHHHHHHH----HTSTTCCCCEEECTTSCCCHHHH
T ss_pred             cccccccccccchhhhhhhhc-ccccccccchhhhheeeecccCcccchhhhh----hhcccCCCCEEECCCCCCChHHH
Confidence            356667777665542211100 01122345667777777766532    2221    22 34556777777777654   


Q ss_pred             -hhhHhhhcCCCCCEEECcCCcce
Q 043924          139 -SILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       139 -~iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                       .+++.+..+++|++|+|++|+++
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCcCC
Confidence             24445556667777777777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.70  E-value=1.2e-05  Score=60.38  Aligned_cols=70  Identities=23%  Similarity=0.215  Sum_probs=37.0

Q ss_pred             ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH----hhhc--CCCCCEEECcCCcce
Q 043924           92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS----SVAH--LSSLTSLYLYSNRLE  161 (167)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~----~l~~--l~~L~~L~L~~N~ls  161 (167)
                      +...++|+.|++++|.++..-.......+..+++|++|++++|.+++.-..    .+..  .+.|++|++++|+++
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            444566667777766664221100011155666677777777776643222    2222  245677777777664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=4.3e-05  Score=56.06  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=47.8

Q ss_pred             cCCCCccEEEcCCC-ceeeecCcccccccCCCCCCCEEeCcC-CcCCchhhHhhhcCCCCCEEECcCC
Q 043924           93 TPFQQLESLYLEYN-NIAGCVENEGIERLSRLSNLKMLDLSE-NLFNNSILSSVAHLSSLTSLYLYSN  158 (167)
Q Consensus        93 ~~l~~L~~L~Ls~n-~l~g~ip~~~~~~~~~l~~L~~L~ls~-N~l~g~iP~~l~~l~~L~~L~L~~N  158 (167)
                      ..+++|++|+++++ .+++.....    +..+++|++|++++ +++++.....++++++|++|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~----l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQE----FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhh----hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34678889999875 466555555    78888899999988 5777766677888889999988776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=1.7e-05  Score=53.91  Aligned_cols=92  Identities=12%  Similarity=0.052  Sum_probs=42.0

Q ss_pred             CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-------h
Q 043924           67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-------S  139 (167)
Q Consensus        67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-------~  139 (167)
                      ..++.|+|+++.+..-+...+ ...+...+.|++|++++|.++..--......+..-+.|++|++++|++..       .
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~l-a~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGL-IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTH-HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CccceeeccccccchhHHHHH-hhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            345566666655431110000 01122345566666666665532111111124555566666666654431       1


Q ss_pred             hhHhhhcCCCCCEEECcCCc
Q 043924          140 ILSSVAHLSSLTSLYLYSNR  159 (167)
Q Consensus       140 iP~~l~~l~~L~~L~L~~N~  159 (167)
                      +...+..-++|+.|+++.+.
T Consensus       123 l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCCccEeeCcCCC
Confidence            33344455666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.99  E-value=0.00038  Score=46.93  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCCC-CCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----h
Q 043924           66 TGRVIQLDLSFI-GNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----I  140 (167)
Q Consensus        66 ~~~v~~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----i  140 (167)
                      ...++.|+|+++ .++.-+-..+ ...+...+.|++|++++|.+...-.......+...+.|++|++++|.++..    +
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l-~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHH-HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            467999999874 3432110001 123455688999999999986432222112255678899999999999863    3


Q ss_pred             hHhhhcCCCCCEEECcCCcce
Q 043924          141 LSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       141 P~~l~~l~~L~~L~L~~N~ls  161 (167)
                      -..+...++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            345667788999999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.16  E-value=0.003  Score=42.04  Aligned_cols=95  Identities=17%  Similarity=0.104  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCC-CCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----h
Q 043924           66 TGRVIQLDLSFI-GNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----I  140 (167)
Q Consensus        66 ~~~v~~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----i  140 (167)
                      ...++.|++++. .++.-+-..+ ...+...++|++|++++|.++..--......+...+.++.+++++|.++..    +
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l-~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHH-HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            467889999874 4532110001 122456789999999999886432222112256678999999999998753    3


Q ss_pred             hHhhhcCCCCCEEEC--cCCcce
Q 043924          141 LSSVAHLSSLTSLYL--YSNRLE  161 (167)
Q Consensus       141 P~~l~~l~~L~~L~L--~~N~ls  161 (167)
                      -..+...++|+.++|  ++|++.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhCccccEEeeccCCCcCc
Confidence            356778889998666  456653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.05  E-value=0.0016  Score=43.50  Aligned_cols=95  Identities=19%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeC--cCCcCCc----h
Q 043924           66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL--SENLFNN----S  139 (167)
Q Consensus        66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~l--s~N~l~g----~  139 (167)
                      ..+++.|+++++.++.-+...+ ...+...+.++.+++++|.+...--......+...++|+.++|  +.|.+..    .
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L-~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFAL-AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHH-HHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHH-HHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            4679999999998753221111 1224457889999999999864322111223677788987655  5677754    3


Q ss_pred             hhHhhhcCCCCCEEECcCCcce
Q 043924          140 ILSSVAHLSSLTSLYLYSNRLE  161 (167)
Q Consensus       140 iP~~l~~l~~L~~L~L~~N~ls  161 (167)
                      +...+...++|+.|+++.++..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeCcCCCCc
Confidence            5566778999999999887643