Citrus Sinensis ID: 043926

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNRS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHHccccccccEEEcccccEEEEccEEEEcHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHcEEEEEcEEEEEccccEEHHHHHHHHcHHHHEcccccccccc
Coil and Loop (DISEMBL)
MKALMFNHALELFSRHAlrqnypdvgyEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSydglddkeknIFLDVACFLNGEDVYSVMKFldtsgfypeiGIILIDKSLIAVSCNKITMHDLLQGLGREIvqqksidprnrs
Flexible Loop (DISEMBL)
MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKlrrilhpsiQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCNKITMHDLLQGlgreivqqksidprnrs
Low Complexity Region (SEG)
MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNRS
Disordered region (IsUnstruct)
****MFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCNKITMHDLLQGLGREIV***********
Disordered Region (DISOPRED)
MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSID*****
Disordered Region (DISEMBL)
MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCNKITMHDLLQGLGREIVQQ*********
Disordered Region (DISPRO)
*KALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCNKITMHDLLQGLGREIVQQK********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.993	0.142	0.397	8e-27
Q9FL92	1372	Probable WRKY transcripti	no	no	1.0	0.119	0.391	5e-26
Q9FH83	1288	Probable WRKY transcripti	no	no	0.896	0.114	0.382	2e-22
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.920	0.093	0.379	1e-20
O82500	1095	Putative disease resistan	no	no	0.945	0.141	0.377	1e-20
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.878	0.110	0.384	6e-18
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.829	0.071	0.393	1e-14
Q9FKZ1	809	Probable disease resistan	no	no	0.487	0.098	0.302	6e-05
Q9LVT1	623	Putative disease resistan	no	no	0.945	0.248	0.230	8e-05
O64790	762	Probable disease resistan	no	no	0.737	0.158	0.268	8e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 108/166 (65%), Gaps = 3/166 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           + AL  + +++LF +HA  +  P+  +E+LS +V+ YA+G+P ALKV G  L       W
Sbjct: 345 VTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEW 404

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
           ++AI+ ++   +  I + LK+SYDGL+ K++ +FLD+ACFL GE+   +++ L++     
Sbjct: 405 KSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGA 464

Query: 121 EIGI-ILIDKSLIAVS-CNKITMHDLLQGLGREIVQQKSIDPRNRS 164
           E G+ ILIDKSL+ +S  N++ MHDL+Q +G+ IV  +  DP  RS
Sbjct: 465 EYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQK-DPGERS 509

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEV- 59
           ++ L    AL+LFS  A   +  +    E+S KV++YA G P AL + G  L  +++   
Sbjct: 293 VQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPE 352

Query: 60  WENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFY 119
            E A  KL+        + +K SYD L+D+EKNIFLD+ACF  GE+V  VM+ L+  GF+
Sbjct: 353 MEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFF 412

Query: 120 PEIGI-ILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNRS 164
           P +GI +L++KSL+ +S N++ MH+L+Q +GR+I+ +++   + RS
Sbjct: 413 PHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQIINRETRQTKRRS 458

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 91/149 (61%), Gaps = 2/149 (1%)

Query: 17  ALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREK-EVWENAIKKLRRILHPSI 75
           +++++  +   +ELS +V+ YA G P A+ V G  L  ++K    E A  KL+R     I
Sbjct: 316 SIKEDMGEQNLQELSVRVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKI 375

Query: 76  QEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAV 134
            +  K +YD L D EKNIFLD+ACF  GE+V  V++ L+  GF+P + I +L+DK L+ +
Sbjct: 376 VDAFKSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTI 435

Query: 135 SCNKITMHDLLQGLGREIVQQKSIDPRNR 163
           S N++ +H L Q +GREI+  +++    R
Sbjct: 436 SENRVWLHKLTQDIGREIINGETVQIERR 464

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 2/153 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           ++ L  + AL+LFS+     N P+    +LS KV++Y  G P AL + G  L  ++ E+ 
Sbjct: 323 VQGLNVHEALQLFSQSVFGINEPEQNDRKLSMKVIDYVNGNPLALSIYGRELMGKKSEM- 381

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
           E A  +L+      IQ+VLK +Y  L D EKNI LD+A F  GE V  VM+ L+ S ++P
Sbjct: 382 ETAFFELKHCPPLKIQDVLKNAYSALSDNEKNIVLDIAFFFKGETVNYVMQLLEESHYFP 441

Query: 121 EIGI-ILIDKSLIAVSCNKITMHDLLQGLGREI 152
            + I +L+DK ++ +S N + M++L+Q   +EI
Sbjct: 442 RLAIDVLVDKCVLTISENTVQMNNLIQDTCQEI 474

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 96/159 (60%), Gaps = 4/159 (2%)

Query: 9   ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
           AL +F +HA +Q+ P    + L+ +    A  +P AL+VLG F+  + KE WE ++  L+
Sbjct: 349 ALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLK 408

Query: 69  RILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGE-DVYSVMKFLDTSGFYPEIGI-IL 126
             L   +++VLK+ YDGL D EK++FL +AC  +G+ + Y     +  +  Y   G+ +L
Sbjct: 409 SRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVL 468

Query: 127 IDKSLIAVSCN-KITMHDLLQGLGREIVQQKSI-DPRNR 163
            DKSLI    N +I MH LL+ LG+E+V+++SI +P  R
Sbjct: 469 ADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKR 507

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 87/151 (57%), Gaps = 7/151 (4%)

Query: 9   ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
           AL +  R A  ++ P   ++EL+ +V + A  +P  L VLG  L  R KE W   + +LR
Sbjct: 345 ALTMLCRSAFGKDSPPDDFKELAFEVAKLAGNLPLGLSVLGSSLKGRTKEWWMEMMPRLR 404

Query: 69  RILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFL-DTSGFYPEIGIILI 127
             L+  I + L++SYD L  K++++FL +AC  NG +V  V   L D  GF      +L 
Sbjct: 405 NGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVKDLLKDNVGF-----TMLT 459

Query: 128 DKSLIAVSCNK-ITMHDLLQGLGREIVQQKS 157
           +KSLI ++ +  I MH+LL+ LGREI + KS
Sbjct: 460 EKSLIRITPDGYIEMHNLLEKLGREIDRAKS 490

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 9/145 (6%)

Query: 23   PDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLS 82
            P+V Y+ LS ++++++ G P  L+ L     +RE       +K    I  P I E    S
Sbjct: 994  PEV-YKTLSLELVKFSNGNPQVLQFLSSI--DREWNKLSQEVKTTSPIYIPGIFEK---S 1047

Query: 83   YDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGII-LIDKSLIAVSC-NKIT 140
              GLDD E+ IFLD+ACF N  D  +V   LD  GF   +G   L+DKSL+ +S  N + 
Sbjct: 1048 CCGLDDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVD 1107

Query: 141  MHDLLQGLGREIVQQKSID-PRNRS 164
            M   +Q  GREIV+Q+S D P +RS
Sbjct: 1108 MLSFIQATGREIVRQESADRPGDRS 1132

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 27  YEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKL---RRIL---HPSIQEVLK 80
           YE+L +K+++   G P  ++V+G  L  R    W+  ++      +IL   +P++ E L+
Sbjct: 343 YEDLLQKILKRCNGFPIVIEVVGVSLKGRSLNTWKGQVESWSEGEKILGKPYPTVLECLQ 402

Query: 81  LSYDGLDDKEKNIFLDVACFLNGEDV 106
            S+D LD   K  FLD+  FL  + +
Sbjct: 403 PSFDALDPNLKECFLDMGSFLEDQKI 428

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 27/182 (14%)

Query: 9   ALELFSRHALRQNYPDVGYEE-LSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKL 67
           A  LF   A  Q     G+ + L ++V+  ++G+P +LKVLG  L +R +  W  A+++L
Sbjct: 135 ATSLFCLSAFNQKSVPSGFSKSLVKQVVGESKGLPLSLKVLGASLNDRPETYWAIAVERL 194

Query: 68  RR-----ILHPS-IQEVLKLSYDGLDDKEKNIFLDVACFLNGEDV---------YSVMKF 112
            R       H S +   ++ + + LD K K  FLD+  F  G+ +           +   
Sbjct: 195 SRGEPVDETHESKVFAQIEATLENLDPKTKECFLDMGAFPEGKKIPVDVLINMLVKIHDL 254

Query: 113 LDTSGFYPEIGI-------ILIDKSLIAVSCNK----ITMHDLLQGLGREIVQQKSIDPR 161
            D + F   + +       ++ D + +A+  +     +T HD+L+ +   +  +  +  R
Sbjct: 255 EDAAAFDVLVDLANRNLLTLVKDPTFVAMGTSYYDIFVTQHDVLRDVALHLTNRGKVSRR 314

Query: 162 NR 163
           +R
Sbjct: 315 DR 316

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 24/145 (16%)

Query: 29  ELSRKVMEYAQGVPSALKVLGCFLFEREK-EVWENAIKKLRRI------LHPSIQEVLKL 81
           EL+R+V +  +G+P AL V+G  +  +   + WE+AI  L R       +   I  +LK 
Sbjct: 224 ELAREVAQKCRGLPLALSVIGETMASKTMVQEWEHAIDVLTRSAAEFSNMGNKILPILKY 283

Query: 82  SYDGLDDKE-KNIFLDVACFLNGEDVYS--VMKFLDTSGF--------------YPEIGI 124
           SYD L D+  K+ FL  A F   +++Y+  ++ +    GF              Y  +G 
Sbjct: 284 SYDSLGDEHIKSCFLYCALFPEDDEIYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLGT 343

Query: 125 ILIDKSLIAVSCNKITMHDLLQGLG 149
           + +   L  V    + MHD+++ + 
Sbjct: 344 LTLANLLTKVGTEHVVMHDVVREMA 368

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
359496026	1250	PREDICTED: TMV resistance protein N-like	0.920	0.120	0.546	3e-38
359495289	1133	PREDICTED: TMV resistance protein N-like	0.963	0.139	0.506	4e-38
357471111	1264	NBS-LRR resistance-like protein 4G [Medi	1.0	0.129	0.497	4e-38
357515077	1266	NBS-LRR resistance-like protein 4G [Medi	1.0	0.129	0.497	5e-38
255537139	1137	leucine-rich repeat-containing protein,	1.0	0.144	0.509	5e-38
359486073	1296	PREDICTED: TMV resistance protein N-like	1.0	0.126	0.493	7e-38
356577113	1344	PREDICTED: putative disease resistance p	1.0	0.122	0.491	9e-38
356522934	1031	PREDICTED: TMV resistance protein N-like	1.0	0.159	0.502	2e-37
255561520	465	conserved hypothetical protein [Ricinus	0.987	0.348	0.512	3e-37
359486075	1291	PREDICTED: TMV resistance protein N-like	1.0	0.127	0.481	5e-37

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/152 (54%), Positives = 109/152 (71%), Gaps = 1/152 (0%)

Query: 7   NHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKK 66
           N A+ LFSRHA  +++P   Y ELS   + YA+G+P ALKVLG FLF + K  W++ + K
Sbjct: 355 NDAVALFSRHAFEEDHPTEDYMELSNYAVSYAKGLPLALKVLGSFLFSKSKLEWKSQLDK 414

Query: 67  LRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-I 125
           L+   H  I+ VL++S+DGLDD E++IFLDVACF  GED   V+K LD+ GFYP IGI +
Sbjct: 415 LQINPHMDIESVLRVSFDGLDDTEQDIFLDVACFFKGEDKDYVIKILDSCGFYPSIGIRV 474

Query: 126 LIDKSLIAVSCNKITMHDLLQGLGREIVQQKS 157
           LIDKSLI V  NK+ MHDLLQ +G +IV++ S
Sbjct: 475 LIDKSLITVVHNKLWMHDLLQEMGWDIVRKTS 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495289|ref|XP_002276927.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 120/160 (75%), Gaps = 2/160 (1%)

Query: 7   NHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKK 66
           ++A+ELFSR+A ++ +P   Y ELS+ ++ YAQG+P AL+VLG FLF++ K  WE+ + K
Sbjct: 378 DNAVELFSRYAFKKAHPIDDYVELSQCIVVYAQGLPLALRVLGSFLFDKSKRQWESQLDK 437

Query: 67  LRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-I 125
           L++I    IQ+VL++S+DGL+D E++IFLD+ACF  G D   VM+   + GF+P+IGI +
Sbjct: 438 LKKIPKKEIQDVLRVSFDGLEDNERDIFLDIACFFQGHDKDYVMEIFRSCGFFPDIGIRV 497

Query: 126 LIDKSLIAVSCNKITMHDLLQGLGREIVQQKSI-DPRNRS 164
           LI+KSLI+V  NK+ MH+LLQ +GREIV++ S  +P  RS
Sbjct: 498 LIEKSLISVVENKLMMHNLLQKMGREIVREASPKEPGKRS 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471111|ref|XP_003605840.1| NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|355506895|gb|AES88037.1| NBS-LRR resistance-like protein 4G [Medicago truncatula]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           +K L F+ +L+LFS  A ++  PD+GY++LS  V+ YA G+P ALKVLG     + KE+W
Sbjct: 346 VKPLNFHESLQLFSLSAFKKVCPDIGYQQLSESVVNYAGGIPLALKVLGSLFSYKSKEIW 405

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
           ++ + KL++I    IQ +L+LSYDGLDD EK IFLD+ACFLNG+D   V + LD  GFY 
Sbjct: 406 QSTMTKLKKIPCREIQNILRLSYDGLDDTEKEIFLDIACFLNGKDRQHVTRLLDACGFYA 465

Query: 121 EIGI-ILIDKSLIAVS-CNKITMHDLLQGLGREIVQQKSI-DPRNRS 164
             G+  L++K+LI  S  N++ MH L+Q +GREIV+Q+S  DP  RS
Sbjct: 466 VPGLETLLEKALITFSNNNQVQMHALIQEMGREIVRQESTKDPGRRS 512

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515077|ref|XP_003627827.1| NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|355521849|gb|AET02303.1| NBS-LRR resistance-like protein 4G [Medicago truncatula]

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           +K L F+ +L+LFS  A ++  PD+GY++LS  V+ YA G+P ALKVLG     + KE+W
Sbjct: 346 VKPLNFHESLQLFSLSAFKKVCPDIGYQQLSESVVNYAGGIPLALKVLGSLFSYKSKEIW 405

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
           ++ + KL++I    IQ +L+LSYDGLDD EK IFLD+ACFLNG+D   V + LD  GFY 
Sbjct: 406 QSTMTKLKKIPCREIQNILRLSYDGLDDTEKEIFLDIACFLNGKDRQHVTRLLDACGFYA 465

Query: 121 EIGI-ILIDKSLIAVS-CNKITMHDLLQGLGREIVQQKSI-DPRNRS 164
             G+  L++K+LI  S  N++ MH L+Q +GREIV+Q+S  DP  RS
Sbjct: 466 VPGLETLLEKALITFSNNNQVQMHALIQEMGREIVRQESTKDPGRRS 512

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 114/165 (69%), Gaps = 1/165 (0%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           +K L+ + AL+LF++   ++      Y  LS  V+EYA+GVP ALKVLG FLF + K  W
Sbjct: 340 VKELVHHEALQLFNQTTFKKKCVPEDYSYLSDLVIEYAKGVPLALKVLGSFLFGKSKTEW 399

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
           E+A+ KL++  H + Q VLK+SYDGLD +EKNIFLD+ACF  GE V  V K LD  GF  
Sbjct: 400 ESALDKLKKAPHRATQNVLKISYDGLDAEEKNIFLDIACFFRGESVEMVTKILDGCGFST 459

Query: 121 EIGI-ILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNRS 164
           +IG+ +L+DKSLI +  +K+ MHDLLQ +G+EIV Q+S  P  R+
Sbjct: 460 KIGLCLLVDKSLITILNDKVEMHDLLQEMGKEIVLQESKQPSQRT 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 118/166 (71%), Gaps = 2/166 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           +K L  + A +LF +HA +   P   + +L  + + Y +G+P ALK+LG FL+ R K+ W
Sbjct: 353 VKELNKDEARKLFYQHAFKYKPPAGDFVQLCDRALNYTKGIPLALKILGRFLYNRSKKEW 412

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
           E+ ++KLRRI +  IQ+VL++S+DGLDD +K+IFLD+ACF  G+D   V+K L +  F+P
Sbjct: 413 ESELEKLRRIPNNEIQDVLRISFDGLDDNQKDIFLDIACFFKGQDKDYVIKLLKSCDFFP 472

Query: 121 EIGII-LIDKSLIAVSCNKITMHDLLQGLGREIVQQKSI-DPRNRS 164
           EIGI  LIDKSL+ +S NK+ MHDL+Q +G EIV+Q+SI DP  RS
Sbjct: 473 EIGIRNLIDKSLVTISYNKLCMHDLIQKMGWEIVRQESIKDPGKRS 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577113|ref|XP_003556672.1| PREDICTED: putative disease resistance protein At4g11170-like [Glycine max]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 120/167 (71%), Gaps = 3/167 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           +K L  +HA+ LFS +A  + YP+ G+E LS++V+++A G P ALKVLG  L  R ++ W
Sbjct: 375 VKGLSLHHAVRLFSLNAFGKTYPEKGFEMLSKQVVDHANGNPLALKVLGSLLHSRNEQQW 434

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
            NA++KL ++ +  IQ VL+ SYDGLD ++KN+FLD+ACF  GE++ +V++ L+  GFYP
Sbjct: 435 ANALRKLTKVPNAEIQNVLRWSYDGLDYEQKNMFLDIACFFRGENIENVIRLLEICGFYP 494

Query: 121 EIGI-ILIDKSLIAVSCN-KITMHDLLQGLGREIVQQKSI-DPRNRS 164
            IGI IL +KSL+  S + K+ MHDL+Q +G EIV ++SI DP  RS
Sbjct: 495 YIGIKILQEKSLVTFSDDGKVCMHDLIQEMGWEIVHRESIKDPGRRS 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522934|ref|XP_003530097.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 117/167 (70%), Gaps = 3/167 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           +K + F ++LELFS +A  + YP+ GYEELS++ M+YA+G+P ALKVLG FL  R +  W
Sbjct: 354 VKKMNFQNSLELFSLNAFGKTYPEKGYEELSKRAMDYAKGIPLALKVLGSFLRSRSENEW 413

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
            +A+ KL++  +  IQ VL+LSY GLDD EKNIFLD+ACFL G+    V K L+   F  
Sbjct: 414 HSALSKLKKSPNVKIQAVLRLSYAGLDDDEKNIFLDIACFLKGQSRDHVTKILNDCDFSA 473

Query: 121 EIGI-ILIDKSLIAVS-CNKITMHDLLQGLGREIVQQKSID-PRNRS 164
           +IGI  L+DK+LI  +  N I MHDL+Q +GRE+V+++S+  P  RS
Sbjct: 474 DIGIRSLLDKALITTTYSNCIDMHDLIQEMGREVVREESVKFPGQRS 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561520|ref|XP_002521770.1| conserved hypothetical protein [Ricinus communis] gi|223538983|gb|EEF40580.1| conserved hypothetical protein [Ricinus communis]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 115/164 (70%), Gaps = 2/164 (1%)

Query: 3   ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWEN 62
            L  N AL+LFS +   QN+P   + +LS++V+ YA+G P ALKVLGCFL ++ K+ WE 
Sbjct: 157 GLNLNEALQLFSINCFNQNHPLEEFMQLSKRVIYYAKGNPLALKVLGCFLLDKSKQDWEI 216

Query: 63  AIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEI 122
           A+ KL+R  +  ++ VL+LSYDGL+ ++K IFLD+ACF  GEDV  V + LD  GFY +I
Sbjct: 217 ALDKLKRTSNIGMKNVLRLSYDGLEIEDKEIFLDIACFFKGEDVCFVERILDGCGFYVDI 276

Query: 123 GI-ILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSI-DPRNRS 164
           G+  L+DKSLI VS  K+ MHDL+Q +G E VQQ+S  +P  RS
Sbjct: 277 GLNNLVDKSLITVSNGKLWMHDLIQEMGWETVQQESTGEPGERS 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 116/166 (69%), Gaps = 2/166 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           +K L  + A  LF +HA +   P   + +L  + + Y +G+P ALK+LG FL+ R K+ W
Sbjct: 348 VKELNKDEARRLFYQHAFKYKPPAGDFVQLCDRALNYTKGIPLALKILGRFLYNRSKKEW 407

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP 120
           E+ ++KLRRI +  IQ+VL++S+DGLDD +K+IF D+ACF  G+D   V+K L +  F+P
Sbjct: 408 ESELEKLRRIPNKEIQDVLRISFDGLDDNQKDIFFDIACFFKGQDKDYVIKLLKSCDFFP 467

Query: 121 EIGII-LIDKSLIAVSCNKITMHDLLQGLGREIVQQKSI-DPRNRS 164
           EIGI  LIDKSL+ +S NK+ MHDL+Q +G EIV+Q+S+ DP  RS
Sbjct: 468 EIGIRNLIDKSLVTISYNKLCMHDLIQEMGWEIVRQESMKDPGKRS 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.987	0.125	0.455	1.9e-30
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.963	0.132	0.422	1.6e-27
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.975	0.139	0.412	5.2e-27
TAIR|locus:2155347	1372	TTR1 "TOLERANT TO TOBACCO RING	1.0	0.119	0.391	2.7e-25
TAIR|locus:2122199	1607	AT4G36140 [Arabidopsis thalian	0.957	0.097	0.405	3.4e-25
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.945	0.153	0.411	7.4e-25
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.871	0.117	0.431	5.5e-24
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.945	0.138	0.426	1.3e-23
TAIR|locus:2081790	1253	AT3G51560 [Arabidopsis thalian	0.878	0.114	0.390	3.2e-23
TAIR|locus:2146243	900	AT5G18360 [Arabidopsis thalian	0.945	0.172	0.415	4e-23

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 1.9e-30, P = 1.9e-30
 Identities = 76/167 (45%), Positives = 110/167 (65%)

Query:     1 MKALMFNHALELFSRHALRQNY--PDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKE 58
             +K L    AL+LF  +A R+    P  G+EELS + + YA G+P AL+VLG FL+ R + 
Sbjct:   340 VKCLPKKEALQLFCNYAFREEIILPH-GFEELSVQAVNYASGLPLALRVLGSFLYRRSQI 398

Query:    59 VWENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGF 118
              WE+ + +L+   H  I EVL++SYDGLD++EK IFL ++CF N + V  V K LD  G+
Sbjct:   399 EWESTLARLKTYPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKQVDYVRKLLDLCGY 458

Query:   119 YPEIGI-ILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSID-PRNR 163
               EIGI IL +KSLI  S   + +HDLL+ +GRE+V+Q++++ P  R
Sbjct:   459 AAEIGITILTEKSLIVESNGCVKIHDLLEQMGRELVRQQAVNNPAQR 505

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 1.6e-27, P = 1.6e-27
 Identities = 68/161 (42%), Positives = 105/161 (65%)

Query:     2 KALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWE 61
             K L  + +LELFS HA R + P   + + S +V+ Y  G+P A++VLG FL ER    WE
Sbjct:   345 KELDGDESLELFSWHAFRTSEPPKEFLQHSEEVVTYCAGLPLAVEVLGAFLIERSIREWE 404

Query:    62 NAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPE 121
             + +K L+RI + +IQ  L++S++ L  ++K++FLD+ACF  G D Y V   LD    YP+
Sbjct:   405 STLKLLKRIPNDNIQAKLQISFNALTIEQKDVFLDIACFFIGVDSYYVACILDGCNLYPD 464

Query:   122 IGI-ILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPR 161
             I + +L+++ LI +S N I MHDLL+ +GR+IV++  I P+
Sbjct:   465 IVLSLLMERCLITISGNNIMMHDLLRDMGRQIVRE--ISPK 503

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 316 (116.3 bits), Expect = 5.2e-27, P = 5.2e-27
 Identities = 68/165 (41%), Positives = 108/165 (65%)

Query:     3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWEN 62
             AL  + +++LF +HA  +  P+  +E+LS +V+ YA+G+P ALKV G  L       W++
Sbjct:   347 ALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKS 406

Query:    63 AIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEI 122
             AI+ ++   +  I + LK+SYDGL+ K++ +FLD+ACFL GE+   +++ L++     E 
Sbjct:   407 AIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEY 466

Query:   123 GI-ILIDKSLIAVS-CNKITMHDLLQGLGREIVQ-QKSIDPRNRS 164
             G+ ILIDKSL+ +S  N++ MHDL+Q +G+ IV  QK  DP  RS
Sbjct:   467 GLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQK--DPGERS 509

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2155347 TTR1 "TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 65/166 (39%), Positives = 104/166 (62%)

Query:     1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEV- 59
             ++ L    AL+LFS  A   +  +    E+S KV++YA G P AL + G  L  +++   
Sbjct:   293 VQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPE 352

Query:    60 WENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFY 119
              E A  KL+        + +K SYD L+D+EKNIFLD+ACF  GE+V  VM+ L+  GF+
Sbjct:   353 MEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFF 412

Query:   120 PEIGI-ILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNRS 164
             P +GI +L++KSL+ +S N++ MH+L+Q +GR+I+ +++   + RS
Sbjct:   413 PHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQIINRETRQTKRRS 458

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009615 "response to virus" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2122199 AT4G36140 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 3.4e-25, P = 3.4e-25
 Identities = 64/158 (40%), Positives = 97/158 (61%)

Query:     7 NHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKK 66
             N AL+LFS+ A R++  +    ELS KV++YA G P AL      L  +E    E    K
Sbjct:   741 NEALQLFSQCAFRRDINEQNLLELSLKVIDYASGNPLALSFYCRVLKGKELSEMETTFFK 800

Query:    67 LRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-I 125
             L++     I ++ K SY+ LDD EKNIFLD+ACF +GE+V  VM+ L+  GF+P +GI +
Sbjct:   801 LKQRTPYKIFDLFKSSYETLDDNEKNIFLDIACFFSGENVDYVMRLLEGCGFFPHVGIDV 860

Query:   126 LIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNR 163
             L++  L+ +S N++ MH ++Q  GREI+  +++    R
Sbjct:   861 LVENCLVTISENRVKMHRIIQDFGREIIDGETVQIERR 898

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 7.4e-25, P = 7.4e-25
 Identities = 65/158 (41%), Positives = 100/158 (63%)

Query:     9 ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
             ALE+FS+ A RQN P  G+ EL+ +V + +  +P AL VLG  L  R+KE W + + +LR
Sbjct:   354 ALEMFSQSAFRQNSPPPGFTELASEVSKRSGNLPLALNVLGSHLRGRDKEDWIDMLPRLR 413

Query:    69 RILHPSIQEVLKLSYDGLDDKE-KNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGII-L 126
             + L   I+++L++ YD L +K+ K IF  +AC  NG ++  +   L  S     IG+  L
Sbjct:   414 KGLDGKIEKILRVGYDELSNKDDKAIFRLIACLFNGAEISYIKLLLADSNLGVTIGLKNL 473

Query:   127 IDKSLIAVSCNKITMHDLLQGLGREIVQQKSI-DPRNR 163
             +DKSLI + C+ + MH +LQ +GREIV+++SI +P  R
Sbjct:   474 VDKSLIRIGCDTVEMHSMLQEMGREIVREQSIYEPGER 511

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 63/146 (43%), Positives = 93/146 (63%)

Query:     9 ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
             AL+LFS +A   ++P   +E L+  V++YA+G P ALKVLG  L ER+   WE  + +L+
Sbjct:   350 ALKLFSLNAFSNSFPLKEFEGLTNMVLDYAKGHPLALKVLGSDLCERDDLYWEAKLDRLK 409

Query:    69 RILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGII--L 126
                H  I EVL+ SY+ L  ++KN+FLD+ACF   E+V  V   L++ G     G++  L
Sbjct:   410 SRSHGDIYEVLETSYEELTTEQKNVFLDIACFFRSENVDYVTSLLNSHGVDVS-GVVKDL 468

Query:   127 IDKSLIAVSCNKITMHDLLQGLGREI 152
             +DK LI +S N+I MHD+LQ + +EI
Sbjct:   469 VDKCLITLSDNRIEMHDMLQTMAKEI 494

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 67/157 (42%), Positives = 97/157 (61%)

Query:     9 ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
             ALE+F R+A R+N P  G+ ELS +V   A  +P  LKVLG +L  R+ E W + + +L+
Sbjct:   353 ALEMFCRYAFRKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYLRGRDIEDWMDMMPRLQ 412

Query:    69 RILHPSIQEVLKLSYDGLDDK-EKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGII-L 126
               L   I++ L++SYDGL++K ++ IF  +AC  NGE V  +   L  S     IG+  L
Sbjct:   413 NDLDGKIEKTLRVSYDGLNNKKDEAIFRHIACLFNGEKVNDIKLLLAESDLDVNIGLKNL 472

Query:   127 IDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNR 163
             +DKSLI V  + I MH LLQ +G+EIV+ +S +P  R
Sbjct:   473 VDKSLIFVREDTIEMHRLLQDMGKEIVRAQSNEPGER 509

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081790 AT3G51560 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 3.2e-23, P = 3.2e-23
 Identities = 57/146 (39%), Positives = 92/146 (63%)

Query:     9 ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
             AL+LFSR A  +       ++LS+KV++YA G P AL   GC   +  K + E A  K++
Sbjct:   321 ALQLFSRCAFGKEIIHESLQKLSKKVIDYANGNPLALIFFGCMSRKNPKPI-EIAFPKVK 379

Query:    69 RILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILI 127
             + L   I + +K +YD L   EKNIFLD+AC   GE+V  V+  L+  GF+P + I +L+
Sbjct:   380 KYLAHEIHDAVKSTYDSLSSNEKNIFLDIACLFRGENVDCVIHLLEGCGFFPRVEINVLV 439

Query:   128 DKSLIAVSCNKITMHDLLQGLGREIV 153
             +K L++++  ++ MH+L+Q +GR+I+
Sbjct:   440 EKCLVSMAEGRVVMHNLIQSIGRKII 465

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.0e-23, P = 4.0e-23
 Identities = 66/159 (41%), Positives = 103/159 (64%)

Query:     9 ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
             +L++F ++A  ++    G  EL+ ++ + A  +P ALKVLG  L    K+  ++A+ +LR
Sbjct:   351 SLQIFCQYAFGESSAPDGCIELATEITKLAGYLPLALKVLGSSLRGMSKDEQKSALPRLR 410

Query:    69 RILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILI 127
               L+  I+ VL++ YDG+ DK+K IFL +AC  NGE+V  V + L +SG     G+ +L 
Sbjct:   411 TSLNEDIRNVLRVGYDGIHDKDKVIFLHIACLFNGENVDYVKQILASSGLDVTFGLQVLT 470

Query:   128 DKSLIAVS-CNK-ITMHDLLQGLGREIVQQKSI-DPRNR 163
              +SLI +S CN+ ITMH+LL+ LGREIV ++SI +P  R
Sbjct:   471 SRSLIHISRCNRTITMHNLLEQLGREIVCEQSIAEPGKR 509

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021878001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (480 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-33
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	2e-12

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  123 bits (310), Expect = 3e-33
 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 2/157 (1%)

Query: 9   ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
           ALE+F R A ++N P  G+ EL+ +V   A  +P  L VLG +L  R+KE W + + +LR
Sbjct: 356 ALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415

Query: 69  RILHPSIQEVLKLSYDGLDD-KEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGII-L 126
             L   I++ L++SYDGL++ K+K IF  +AC  NGE V  +   L  S     IG+  L
Sbjct: 416 NGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNL 475

Query: 127 IDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNR 163
           +DKSLI V  + + MH LLQ +G+EIV+ +S +P  R
Sbjct: 476 VDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGER 512

syringae 6; Provisional. Length = 1153

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 8   HALELFSRHALRQNYP-DVGYEELSRKVMEYAQGVPSALKVLGCFLFER-EKEVWENAIK 65
            + ELFS     +  P     EE++++++E  +G+P ALKVLG  L  +   + WE+ ++
Sbjct: 160 ESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLE 219

Query: 66  KLRRILHP-----SIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYS--VMKFLDTSGF 118
           +L   L        +  +L LSYD L    K  FL +A F    ++    ++K     GF
Sbjct: 220 QLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGF 279

Query: 119 YPEIGI 124
                I
Sbjct: 280 VIPSDI 285

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.88
PRK04841	903	transcriptional regulator MalT; Provisional	98.61
COG3903	414	Predicted ATPase [General function prediction only	96.85
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.5
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.14
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.3
COG3899	849	Predicted ATPase [General function prediction only	91.88
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	86.91

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-34  Score=247.85  Aligned_cols=154  Identities=29%  Similarity=0.404  Sum_probs=136.1

Q ss_pred             CCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC-CHHHHHHHHHHHhhc-----c--
Q 043926            1 MKALMFNHALELFSRHALRQN-YPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER-EKEVWENAIKKLRRI-----L--   71 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~-~~~~w~~~l~~l~~~-----~--   71 (164)
                      +.+|+++|||.||++.+|... ...+..++++++++++|+|+|||++++|+.|+.| +..+|+.+.+.+.+.     +  
T Consensus       314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~  393 (889)
T KOG4658|consen  314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM  393 (889)
T ss_pred             ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence            568999999999999997753 3334578999999999999999999999999997 566999999988764     2  


Q ss_pred             hhhHHHHHHHhhhCcChhHHHHHhhhhhccCCC--CHHHHHHHHHHcCCCCc------------cce-EecccccceeeC
Q 043926           72 HPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGE--DVYSVMKFLDTSGFYPE------------IGI-ILIDKSLIAVSC  136 (164)
Q Consensus        72 ~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~lw~~~g~~~~------------~~l-~L~~~~Ll~~~~  136 (164)
                      ...+..+|++||+.||++.|.||+|||+||+|+  +++.++.+|+|+||+..            .++ +|+++||+....
T Consensus       394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~  473 (889)
T KOG4658|consen  394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER  473 (889)
T ss_pred             hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence            368899999999999999999999999999996  89999999999998632            368 999999999873


Q ss_pred             -----CeEeecHHHHHHHHHHHh
Q 043926          137 -----NKITMHDLLQGLGREIVQ  154 (164)
Q Consensus       137 -----~~~~mHdl~r~~a~~~~~  154 (164)
                           ..|+|||+||++|.+++.
T Consensus       474 ~~~~~~~~kmHDvvRe~al~ias  496 (889)
T KOG4658|consen  474 DEGRKETVKMHDVVREMALWIAS  496 (889)
T ss_pred             cccceeEEEeeHHHHHHHHHHhc
Confidence                 569999999999999999

>PLN03210 Resistant to P

Probab=100.00  E-value=2.9e-32  Score=242.00  Aligned_cols=164  Identities=40%  Similarity=0.659  Sum_probs=150.9

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcchhhHHHHHH
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLK   80 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~~~l~~~l~   80 (164)
                      |+.|+++|||+||+++||++..+++++.+++++|+++|+|+||||+++|+.|++++.++|+.+++++....+..+..+|+
T Consensus       348 v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~  427 (1153)
T PLN03210        348 VCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLR  427 (1153)
T ss_pred             ecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHH
Confidence            46789999999999999988777778899999999999999999999999999999999999999999888889999999


Q ss_pred             HhhhCcCh-hHHHHHhhhhhccCCCCHHHHHHHHHHcCCCCccce-EecccccceeeCCeEeecHHHHHHHHHHHhhcCC
Q 043926           81 LSYDGLDD-KEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSI  158 (164)
Q Consensus        81 ~sy~~L~~-~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~~~~~~mHdl~r~~a~~~~~~e~~  158 (164)
                      +||+.|++ ..|.||+++|+||.+.+.+.+..++...++.+...+ .|+++||++...++|+||||+|+||++++++++.
T Consensus       428 ~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~  507 (1153)
T PLN03210        428 VSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSN  507 (1153)
T ss_pred             HhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcC
Confidence            99999987 699999999999999988888888888888888889 9999999988888999999999999999999876


Q ss_pred             CCCCCC
Q 043926          159 DPRNRS  164 (164)
Q Consensus       159 ~~~~~s  164 (164)
                      +|++|+
T Consensus       508 ~~~~r~  513 (1153)
T PLN03210        508 EPGERE  513 (1153)
T ss_pred             CCCcce
Confidence            677664

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.88  E-value=3.4e-23  Score=159.26  Aligned_cols=121  Identities=30%  Similarity=0.522  Sum_probs=98.7

Q ss_pred             CCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC-CHHHHHHHHHHHhhcc------h
Q 043926            1 MKALMFNHALELFSRHALRQN-YPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER-EKEVWENAIKKLRRIL------H   72 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~-~~~~w~~~l~~l~~~~------~   72 (164)
                      |++|+++||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +...|..+++++....      .
T Consensus       154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~  233 (287)
T PF00931_consen  154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD  233 (287)
T ss_dssp             CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999999999996544 2334556788999999999999999999999653 5678999988876542      3


Q ss_pred             hhHHHHHHHhhhCcChhHHHHHhhhhhccCCC--CHHHHHHHHHHcCCCCc
Q 043926           73 PSIQEVLKLSYDGLDDKEKNIFLDVACFLNGE--DVYSVMKFLDTSGFYPE  121 (164)
Q Consensus        73 ~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~lw~~~g~~~~  121 (164)
                      ..+..++.+||+.||++.|+||+|||+||.++  +.+.++++|.++|++..
T Consensus       234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence            78999999999999999999999999999985  79999999999998764

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.61  E-value=3.3e-07  Score=80.63  Aligned_cols=145  Identities=13%  Similarity=0.187  Sum_probs=99.1

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcchhhHHHHHHHh
Q 043926            3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLS   82 (164)
Q Consensus         3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~~~l~~~l~~s   82 (164)
                      +|+.+|+.++|.... +.. ..   .+.+.++.+.|+|+|+++..++..++..+.. .......+...+...+...+.-.
T Consensus       185 ~f~~~e~~~ll~~~~-~~~-~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  258 (903)
T PRK04841        185 AFDHQEAQQFFDQRL-SSP-IE---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEE  258 (903)
T ss_pred             CCCHHHHHHHHHhcc-CCC-CC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHH
Confidence            789999999998765 322 12   3456789999999999999998877543210 11112222222234466655544


Q ss_pred             -hhCcChhHHHHHhhhhhccCCCCHHHHHHHHHHcCCCCccce-Eeccccccee-e---CCeEeecHHHHHHHHHHHhhc
Q 043926           83 -YDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAV-S---CNKITMHDLLQGLGREIVQQK  156 (164)
Q Consensus        83 -y~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~-~---~~~~~mHdl~r~~a~~~~~~e  156 (164)
                       ++.||++.++.++.+|+++ .++.+.+..+....  .+...+ +|.+.+++.. .   ..+|++|++++++.+.....+
T Consensus       259 v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~  335 (903)
T PRK04841        259 VLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE  335 (903)
T ss_pred             HHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence             7899999999999999997 66766555444311  234567 9999999754 3   237999999999999876443

>COG3903 Predicted ATPase [General function prediction only]

Probab=96.85  E-value=0.0022  Score=51.61  Aligned_cols=148  Identities=17%  Similarity=0.253  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhhcCCC---CCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHH----Hhh------cchh
Q 043926            7 NHALELFSRHALRQN---YPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKK----LRR------ILHP   73 (164)
Q Consensus         7 ~ea~~Lf~~~a~~~~---~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~----l~~------~~~~   73 (164)
                      +++.++|...+.-..   .........+.+|.++.+|.|++|..++++.+.-......+.++.    +..      ....
T Consensus       145 d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~q  224 (414)
T COG3903         145 DEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQ  224 (414)
T ss_pred             CchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHH
Confidence            367888877662211   122344567888999999999999999999987655444443332    221      1235


Q ss_pred             hHHHHHHHhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHHcCCCC--cc-----ce-Eecccccceee----CCeEee
Q 043926           74 SIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP--EI-----GI-ILIDKSLIAVS----CNKITM  141 (164)
Q Consensus        74 ~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~--~~-----~l-~L~~~~Ll~~~----~~~~~m  141 (164)
                      .....+.+||.-|....+-.|..++.|...++.+  ...|.+.|-..  ..     .+ .+++++++...    .-+|+.
T Consensus       225 tl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl  302 (414)
T COG3903         225 TLRASLDWSYALLTGWERALFGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRL  302 (414)
T ss_pred             hccchhhhhhHhhhhHHHHHhcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHH
Confidence            7789999999999999999999999999888665  33444444332  22     35 78999998765    335888


Q ss_pred             cHHHHHHHHHHHhhc
Q 043926          142 HDLLQGLGREIVQQK  156 (164)
Q Consensus       142 Hdl~r~~a~~~~~~e  156 (164)
                      -+.+|.|+.....+.
T Consensus       303 ~eT~r~YalaeL~r~  317 (414)
T COG3903         303 LETGRRYALAELHRS  317 (414)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888999888766554

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.50  E-value=0.0027  Score=50.05  Aligned_cols=128  Identities=14%  Similarity=0.107  Sum_probs=80.8

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHH--HHhhcchhhHHHH
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIK--KLRRILHPSIQEV   78 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~--~l~~~~~~~l~~~   78 (164)
                      +++++.++..+++.+.+-..+..  -..+....|++.|+|.|-.+..+...+     ..|....+  ......-......
T Consensus       177 l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~~~I~~~~v~~~l~~  249 (328)
T PRK00080        177 LEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGDGVITKEIADKALDM  249 (328)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCCCCCCHHHHHHHHHH
Confidence            46789999999999887332221  224678899999999996554444432     12211110  0000111233455


Q ss_pred             HHHhhhCcChhHHHHHh-hhhhccCC-CCHHHHHHHHHHcCCCCccce--Eecccccceee
Q 043926           79 LKLSYDGLDDKEKNIFL-DVACFLNG-EDVYSVMKFLDTSGFYPEIGI--ILIDKSLIAVS  135 (164)
Q Consensus        79 l~~sy~~L~~~~k~~fl-~~a~fp~~-~~~~~l~~lw~~~g~~~~~~l--~L~~~~Ll~~~  135 (164)
                      +...+..|++..+..+. ....|+.+ +..+.+...+..+....+..+  .|++++|++..
T Consensus       250 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~  310 (328)
T PRK00080        250 LGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT  310 (328)
T ss_pred             hCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence            67778899998888886 77778766 577888777755544444344  69999999765

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.14  E-value=0.028  Score=43.63  Aligned_cols=130  Identities=17%  Similarity=0.138  Sum_probs=81.2

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHH-HHHhhcch---hhHH
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAI-KKLRRILH---PSIQ   76 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l-~~l~~~~~---~~l~   76 (164)
                      +++++.+|..+++.+.+-.....  -..+....|++.|+|.|-.+..+...+       |.... ..-.....   ....
T Consensus       156 l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~~v~~~l  226 (305)
T TIGR00635       156 LEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRDIALKAL  226 (305)
T ss_pred             eCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHHHHHHHH
Confidence            46789999999999887322211  224667889999999997665554432       11100 00000111   1222


Q ss_pred             HHHHHhhhCcChhHHHHHh-hhhhccCC-CCHHHHHHHHHHcCCCCccce--Eecccccceee-CCeE
Q 043926           77 EVLKLSYDGLDDKEKNIFL-DVACFLNG-EDVYSVMKFLDTSGFYPEIGI--ILIDKSLIAVS-CNKI  139 (164)
Q Consensus        77 ~~l~~sy~~L~~~~k~~fl-~~a~fp~~-~~~~~l~~lw~~~g~~~~~~l--~L~~~~Ll~~~-~~~~  139 (164)
                      ..+..+|..|++..+..+. .++.+..+ .+.+.+...+......++..+  .|++++|+... .|++
T Consensus       227 ~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~  294 (305)
T TIGR00635       227 EMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI  294 (305)
T ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence            3356678899998888777 55777654 577787777766655555556  39999999765 4443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.30  E-value=0.13  Score=45.31  Aligned_cols=142  Identities=13%  Similarity=0.139  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC-CHHHHHHHHHHHhhcchhhHHHHHH-
Q 043926            3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER-EKEVWENAIKKLRRILHPSIQEVLK-   80 (164)
Q Consensus         3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~-~~~~w~~~l~~l~~~~~~~l~~~l~-   80 (164)
                      .++.+|+-++|....  + .+.+  ....+.+.+..+|.+-|+..++=.+++. +...-   +..+... ...+..-|. 
T Consensus       193 rf~~eE~~~fl~~~~--~-l~Ld--~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~---~~~LsG~-~~~l~dYL~e  263 (894)
T COG2909         193 RFDTEEAAAFLNDRG--S-LPLD--AADLKALYDRTEGWAAALQLIALALRNNTSAEQS---LRGLSGA-ASHLSDYLVE  263 (894)
T ss_pred             cCChHHHHHHHHHcC--C-CCCC--hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH---hhhccch-HHHHHHHHHH
Confidence            367899999998864  1 2221  3446789999999999999998888742 22211   1111111 112222222 


Q ss_pred             HhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHHcCCCCccce-Eecccccceee----CCeEeecHHHHHHHHHHHhh
Q 043926           81 LSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVS----CNKITMHDLLQGLGREIVQQ  155 (164)
Q Consensus        81 ~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~----~~~~~mHdl~r~~a~~~~~~  155 (164)
                      -=++.||+++|..++.+|+++.  .-+.++.-....+ ....-+ +|.+++|+-..    .++|+.|.|+.+|-+.....
T Consensus       264 eVld~Lp~~l~~FLl~~svl~~--f~~eL~~~Ltg~~-ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~  340 (894)
T COG2909         264 EVLDRLPPELRDFLLQTSVLSR--FNDELCNALTGEE-NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR  340 (894)
T ss_pred             HHHhcCCHHHHHHHHHHHhHHH--hhHHHHHHHhcCC-cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence            2267899999999999999952  2234444443321 112236 89999998644    67899999999999887666


Q ss_pred             c
Q 043926          156 K  156 (164)
Q Consensus       156 e  156 (164)
                      +
T Consensus       341 ~  341 (894)
T COG2909         341 E  341 (894)
T ss_pred             c
Confidence            5

>COG3899 Predicted ATPase [General function prediction only]

Probab=91.88  E-value=0.49  Score=42.26  Aligned_cols=112  Identities=16%  Similarity=0.215  Sum_probs=80.6

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC-------CHHHHHHHHHHHhhcch-
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER-------EKEVWENAIKKLRRILH-   72 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~-------~~~~w~~~l~~l~~~~~-   72 (164)
                      |.||+..|...+..... ++...  ...+..+.|+++-.|.|+-+.-+-..+...       ....|..-...+...+. 
T Consensus       216 L~PL~~~d~~~lV~~~l-~~~~~--~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~  292 (849)
T COG3899         216 LAPLSRADTNQLVAATL-GCTKL--LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATT  292 (849)
T ss_pred             cCcCchhhHHHHHHHHh-CCccc--ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhh
Confidence            57899999988888765 44221  224677889999999999987766666531       34455544444433222 


Q ss_pred             hhHHHHHHHhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHH
Q 043926           73 PSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDT  115 (164)
Q Consensus        73 ~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~  115 (164)
                      ..+-+.+..-.+.||...|......|++-..++.+.+..++..
T Consensus       293 ~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~  335 (849)
T COG3899         293 DAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAED  335 (849)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhh
Confidence            3356678888999999999999999999888888877777764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=86.91  E-value=5.8  Score=29.88  Aligned_cols=52  Identities=17%  Similarity=0.192  Sum_probs=37.8

Q ss_pred             CCCCCHHHHHHHHHHhhcCCC--CCCchHHHHHHHHHHHhcCChhHHHHHhhhh
Q 043926            1 MKALMFNHALELFSRHALRQN--YPDVGYEELSRKVMEYAQGVPSALKVLGCFL   52 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l   52 (164)
                      +++|+.+|..+++...+-...  ....--.+..+.|.+.|+|.|..+..++..+
T Consensus       189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            478999999998887652111  1111124778899999999999999888876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	8e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-10

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 70.0 bits (171), Expect = 8e-15
 Identities = 19/185 (10%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           + +L  +   +    + +     +   E++  K +E + G P+ L +       +  E  
Sbjct: 290 VTSLEIDECYDFLEAYGMPMPVGEK-EEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKM 348

Query: 61  ENAIKKLRRIL-----------HPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSV 109
                KL               + S+   L+   + L D++++          G D+   
Sbjct: 349 AQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVK 408

Query: 110 M--------KFLDTSGFYPEIGI----ILIDKSLIAV----SCNKITMHDLLQGLGREIV 153
           +           +      +        L  +  +            +  ++    + +V
Sbjct: 409 LWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVV 468

Query: 154 QQKSI 158
             ++I
Sbjct: 469 DAQTI 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 3e-12
 Identities = 20/159 (12%), Positives = 56/159 (35%), Gaps = 25/159 (15%)

Query: 9   ALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLR 68
              L         Y D   ++L R   E     P  L ++   + +     W+N     +
Sbjct: 303 VKSLLL------KYLDCRPQDLPR---EVLTTNPRRLSIIAESIRD-GLATWDN----WK 348

Query: 69  RILHPSIQEVLKLSYDGLDDKE-KNIFLDVACFLNGEDV---YSVMKFLDTSGFYPEIGI 124
            +    +  +++ S + L+  E + +F  ++ F           ++  +       ++ +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMV 406

Query: 125 I---LIDKSLIAVSCNK--ITMHDLLQGLGREIVQQKSI 158
           +   L   SL+     +  I++  +   L  ++  + ++
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 52/188 (27%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
             +L     LE+ S         D    E +  +++  +G P  + ++G  L +     W
Sbjct: 283 ESSLGKEKGLEILSLFV-NMKKAD--LPEQAHSIIKECKGSPLVVSLIGALLRDFPNR-W 338

Query: 61  ENAIKKLRRIL-----------HPSIQEVLKLSYDGLDDKEKNIFLDVACF--------- 100
           E  +K+L+              + ++ E + +S + L +  K+ + D++           
Sbjct: 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 398

Query: 101 -------LNGEDVYSVMKFLDTSGFYPEIGIILIDKSLIAVSCN----KITMHDLLQGLG 149
                  +  E+V  +++         E     ++KSL+    N    +  +HDL     
Sbjct: 399 VLCILWDMETEEVEDILQ---------E----FVNKSLLFCDRNGKSFRYYLHDLQ---- 441

Query: 150 REIVQQKS 157
            + + +K+
Sbjct: 442 VDFLTEKN 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.88
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.85
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.2
2fna_A	357	Conserved hypothetical protein; structural genomic	98.02
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.93
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	92.24
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	85.96
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	80.65

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.96  E-value=1.7e-30  Score=214.84  Aligned_cols=153  Identities=10%  Similarity=0.084  Sum_probs=122.0

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHH-HhhcchhhHHHHH
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKK-LRRILHPSIQEVL   79 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~-l~~~~~~~l~~~l   79 (164)
                      |++|+.+|||+||.+++|+... .+++.+++++|+++|+|+||||+++|+.++.++ +.|...+.. +.......+..++
T Consensus       290 l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l  367 (549)
T 2a5y_B          290 VTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECIT  367 (549)
T ss_dssp             CCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHH
Confidence            5789999999999999976543 357888999999999999999999999998774 334332322 2222446788899


Q ss_pred             HHhhhCcChhHHHHHh-----------hhhhccCCCCHHHHHHHHHHc--CCCCc-----------cce-Eeccccccee
Q 043926           80 KLSYDGLDDKEKNIFL-----------DVACFLNGEDVYSVMKFLDTS--GFYPE-----------IGI-ILIDKSLIAV  134 (164)
Q Consensus        80 ~~sy~~L~~~~k~~fl-----------~~a~fp~~~~~~~l~~lw~~~--g~~~~-----------~~l-~L~~~~Ll~~  134 (164)
                      .+||+.||+++|.||+           |||+||++++.+  +.+|+++  |++..           .+| +|+++||++.
T Consensus       368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~  445 (549)
T 2a5y_B          368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLS  445 (549)
T ss_dssp             SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSE
T ss_pred             hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence            9999999999999999           999999997655  8999999  77642           268 9999999998


Q ss_pred             e-C---CeEeecHHHHHHHHHHHhhcC
Q 043926          135 S-C---NKITMHDLLQGLGREIVQQKS  157 (164)
Q Consensus       135 ~-~---~~~~mHdl~r~~a~~~~~~e~  157 (164)
                      . .   ++|+|||+||+||++++.+++
T Consensus       446 ~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          446 GKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             EECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             ecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            7 2   469999999999998877653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=2e-26  Score=203.31  Aligned_cols=150  Identities=17%  Similarity=0.237  Sum_probs=128.8

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcc-----------
Q 043926            3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRIL-----------   71 (164)
Q Consensus         3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~-----------   71 (164)
                      +|+++||++||.+.++..   .+++.+.+++|+++|+|+||||+++|++|+.++ ..|...++++....           
T Consensus       285 ~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~  360 (1249)
T 3sfz_A          285 GLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYD  360 (1249)
T ss_dssp             SCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTT
T ss_pred             CCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccc
Confidence            499999999999998432   234456789999999999999999999998866 46999988886532           


Q ss_pred             hhhHHHHHHHhhhCcChhHHHHHhhhhhccCCC--CHHHHHHHHHHcCCCCccce-Eecccccceee-CCe---EeecHH
Q 043926           72 HPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGE--DVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVS-CNK---ITMHDL  144 (164)
Q Consensus        72 ~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~-~~~---~~mHdl  144 (164)
                      ...+..++.+||+.||+++|.||+|||+||+++  +.+.++.+|.+++..+..+| +|+++||++.. +++   |+|||+
T Consensus       361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l  440 (1249)
T 3sfz_A          361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDL  440 (1249)
T ss_dssp             HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHH
Confidence            256999999999999999999999999999884  88999999988776677789 99999999987 553   999999


Q ss_pred             HHHHHHHHHhhc
Q 043926          145 LQGLGREIVQQK  156 (164)
Q Consensus       145 ~r~~a~~~~~~e  156 (164)
                      ||+|+++.+.++
T Consensus       441 ~~~~~~~~~~~~  452 (1249)
T 3sfz_A          441 QVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHTGGG
T ss_pred             HHHHHHhhhhHH
Confidence            999999987765

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.88  E-value=2.5e-23  Score=172.72  Aligned_cols=147  Identities=18%  Similarity=0.256  Sum_probs=122.3

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcc----------
Q 043926            2 KALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRIL----------   71 (164)
Q Consensus         2 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~----------   71 (164)
                      ++|+.+||++||.+.++..   .....+.+.+|+++|+|+||||+.+|+.++.++ ..|...++.+....          
T Consensus       284 ~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~  359 (591)
T 1z6t_A          284 SSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSY  359 (591)
T ss_dssp             SSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred             CCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhcccc
Confidence            5899999999999998532   223345788999999999999999999998764 36888888876432          


Q ss_pred             -hhhHHHHHHHhhhCcChhHHHHHhhhhhccCC--CCHHHHHHHHHHcCCCCccce-Eecccccceee-C---CeEeecH
Q 043926           72 -HPSIQEVLKLSYDGLDDKEKNIFLDVACFLNG--EDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVS-C---NKITMHD  143 (164)
Q Consensus        72 -~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~--~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~-~---~~~~mHd  143 (164)
                       ...+..++..||+.||++.|.||++||+||++  ++.+.++.+|..++..+..+| +|+++||++.. +   .+|+||+
T Consensus       360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~  439 (591)
T 1z6t_A          360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHD  439 (591)
T ss_dssp             CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCH
T ss_pred             chHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcH
Confidence             25799999999999999999999999999987  477889999976544456678 99999999876 2   2699999


Q ss_pred             HHHHHHHHH
Q 043926          144 LLQGLGREI  152 (164)
Q Consensus       144 l~r~~a~~~  152 (164)
                      ++|+|+++.
T Consensus       440 lv~~~~~~~  448 (591)
T 1z6t_A          440 LQVDFLTEK  448 (591)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999987

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.85  E-value=4.8e-22  Score=172.09  Aligned_cols=131  Identities=14%  Similarity=0.162  Sum_probs=108.1

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC--CHHHHHHHHHHHhhcchhhHHHHHH
Q 043926            3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER--EKEVWENAIKKLRRILHPSIQEVLK   80 (164)
Q Consensus         3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~--~~~~w~~~l~~l~~~~~~~l~~~l~   80 (164)
                      +|+.+|||+||++.. +..  .   .++..++   |+|+||||+++|+.|+.+  +...|...       ....+..+|+
T Consensus       297 ~LS~eEA~eLF~~~~-g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLe  360 (1221)
T 1vt4_I          297 TLTPDEVKSLLLKYL-DCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIE  360 (1221)
T ss_dssp             CCCHHHHHHHHHHHH-CCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHc-CCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHH
Confidence            799999999999984 432  1   1233333   999999999999999986  67778653       3467999999


Q ss_pred             HhhhCcChhH-HHHHhhhhhccCCC--CHHHHHHHHHHcCC-CCccce-Eecccccceee--CCeEeecHHHHHHH
Q 043926           81 LSYDGLDDKE-KNIFLDVACFLNGE--DVYSVMKFLDTSGF-YPEIGI-ILIDKSLIAVS--CNKITMHDLLQGLG  149 (164)
Q Consensus        81 ~sy~~L~~~~-k~~fl~~a~fp~~~--~~~~l~~lw~~~g~-~~~~~l-~L~~~~Ll~~~--~~~~~mHdl~r~~a  149 (164)
                      +||+.||++. |+||++||+||+++  +.+.++.+|+++|. .+..+| +|+++||++..  .++|+||||+++++
T Consensus       361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence            9999999999 99999999999875  67889999998753 245688 99999999986  56899999998855

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.20  E-value=3e-06  Score=65.09  Aligned_cols=140  Identities=15%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhcc-CCHHHHHHHHHHHhhcchhhHHHHH
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFE-REKEVWENAIKKLRRILHPSIQEVL   79 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~-~~~~~w~~~l~~l~~~~~~~l~~~l   79 (164)
                      +.+|+.+|+.+++.+..-......  ..+.+..+.+.|+|.|+++..++..+.. .+...+   +..+.......+...+
T Consensus       200 l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l  274 (350)
T 2qen_A          200 VKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTLEVAKGLIMGEL  274 (350)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHHHHHHHHHHHHH
Confidence            578999999999987541111111  1356788999999999999999876432 222221   1111111111111111


Q ss_pred             H-HhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHHc--CCCC---ccce-EecccccceeeCCeEee-cHHHHHHH
Q 043926           80 K-LSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTS--GFYP---EIGI-ILIDKSLIAVSCNKITM-HDLLQGLG  149 (164)
Q Consensus        80 ~-~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~--g~~~---~~~l-~L~~~~Ll~~~~~~~~m-Hdl~r~~a  149 (164)
                      . +.++  ++..+..+..+|.  ...+...+.......  +...   ..++ .|++++||....++|++ |++++.+-
T Consensus       275 ~~l~~~--~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~  348 (350)
T 2qen_A          275 EELRRR--SPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL  348 (350)
T ss_dssp             HHHHHH--CHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred             HHHHhC--ChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence            1 1122  7899999999998  234556666555332  2322   3468 99999999887778887 67777764

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.02  E-value=3.1e-05  Score=59.41  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=85.0

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhcc-CCHHHHHHHHHHHhhcchhhHHHHH
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFE-REKEVWENAIKKLRRILHPSIQEVL   79 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~-~~~~~w~~~l~~l~~~~~~~l~~~l   79 (164)
                      +++|+.+|+.+++.+..-......+..    ..|.+.|+|.|+++..++..+.. .+.+.|   +..+.......+...+
T Consensus       206 l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l  278 (357)
T 2fna_A          206 LKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFA---INQTLEYAKKLILKEF  278 (357)
T ss_dssp             ECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHH---HHHHHHHHHHHHHHHH
Confidence            478999999999987541111112222    78999999999999999887643 233333   1111111111122222


Q ss_pred             H-Hhh--hCcChhHHHHHhhhhhccCCCCHHHHHHHHH-HcC--CC---Cccce-EecccccceeeCCeEee-cHHHHHH
Q 043926           80 K-LSY--DGLDDKEKNIFLDVACFLNGEDVYSVMKFLD-TSG--FY---PEIGI-ILIDKSLIAVSCNKITM-HDLLQGL  148 (164)
Q Consensus        80 ~-~sy--~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~-~~g--~~---~~~~l-~L~~~~Ll~~~~~~~~m-Hdl~r~~  148 (164)
                      . ..+  ..|++..+..+..+|+-  . +...+..... ..|  ..   ...++ .|++++||....+.|++ |++++++
T Consensus       279 ~~~~~~~~~l~~~~~~~l~~la~g--~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~  355 (357)
T 2fna_A          279 ENFLHGREIARKRYLNIMRTLSKC--G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA  355 (357)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHTTC--B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred             HHHhhccccccHHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence            2 111  16889999999999983  2 5555554332 223  22   13468 99999999876677885 6788876


Q ss_pred             H
Q 043926          149 G  149 (164)
Q Consensus       149 a  149 (164)
                      .
T Consensus       356 l  356 (357)
T 2fna_A          356 F  356 (357)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.93  E-value=0.0018  Score=50.66  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=77.7

Q ss_pred             CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc------CChhHHHHHhhhhc------cC---CHHHHHH
Q 043926            1 MKALMFNHALELFSRHA---LRQNYPDVGYEELSRKVMEYAQ------GVPSALKVLGCFLF------ER---EKEVWEN   62 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~iv~~c~------glPLAl~~~g~~l~------~~---~~~~w~~   62 (164)
                      +++|+.++++++|...+   +......   .+....+.+.|+      |.|..+..+.....      +.   +...+..
T Consensus       212 l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~  288 (412)
T 1w5s_A          212 LPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK  288 (412)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence            57899999999997653   2221122   356778889999      99976554443211      11   2233332


Q ss_pred             HHHHHhhcchhhHHHHHHHhhhCcChhHHHHHhhhhhccC----CCCHHHHHHHH-----HHcCCCC------ccce-Ee
Q 043926           63 AIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLN----GEDVYSVMKFL-----DTSGFYP------EIGI-IL  126 (164)
Q Consensus        63 ~l~~l~~~~~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~----~~~~~~l~~lw-----~~~g~~~------~~~l-~L  126 (164)
                      .+.....      ...+.-++..||++.+.++..++.+..    .++...+...+     ...|..+      ..++ .|
T Consensus       289 ~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  362 (412)
T 1w5s_A          289 AVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHL  362 (412)
T ss_dssp             HHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            2222110      234555678899999999999997641    24555544333     2233321      2468 99


Q ss_pred             cccccceee------CCeEeecHHH
Q 043926          127 IDKSLIAVS------CNKITMHDLL  145 (164)
Q Consensus       127 ~~~~Ll~~~------~~~~~mHdl~  145 (164)
                      ++.+||...      .|+|++|+|.
T Consensus       363 ~~~gli~~~~~~~~~~g~~~~~~l~  387 (412)
T 1w5s_A          363 TSLGLVDAKPSGRGMRGRTTLFRLA  387 (412)
T ss_dssp             HHTTSEEEECC-------CCEEEEC
T ss_pred             HhCCCEEeecccCCCCCceeEEEeC
Confidence            999999775      3457777554

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=92.24  E-value=3  Score=31.77  Aligned_cols=125  Identities=17%  Similarity=0.026  Sum_probs=73.2

Q ss_pred             CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CChh-HHHHHhhhh--c-c---CCHHHHHHHHHHH
Q 043926            1 MKALMFNHALELFSRHA---LRQNYPDVGYEELSRKVMEYAQ---GVPS-ALKVLGCFL--F-E---REKEVWENAIKKL   67 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~iv~~c~---glPL-Al~~~g~~l--~-~---~~~~~w~~~l~~l   67 (164)
                      +++++.++..++|.+.+   |......   .+..+.+++.|+   |-|. |+.++-...  . +   -+...+..+++..
T Consensus       194 l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~  270 (384)
T 2qby_B          194 FKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY  270 (384)
T ss_dssp             ECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence            46889999999999875   2222222   245667777887   8776 443333222  1 1   2466666666554


Q ss_pred             hhcchhhHHHHHHHhhhCcChhHHHHHhhhhhccCCCCH-HHHHHHHHHcCCCC------ccce-Eecccccceee
Q 043926           68 RRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDV-YSVMKFLDTSGFYP------EIGI-ILIDKSLIAVS  135 (164)
Q Consensus        68 ~~~~~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~-~~l~~lw~~~g~~~------~~~l-~L~~~~Ll~~~  135 (164)
                      .       ...+..+++.|+++.+..+..++....+-+. .....+-...|..+      ..++ .|.++++++..
T Consensus       271 ~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~  339 (384)
T 2qby_B          271 E-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR  339 (384)
T ss_dssp             H-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             h-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            2       2456778889999888888877761110011 12223333334222      1256 89999999875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=85.96  E-value=1.7  Score=30.29  Aligned_cols=50  Identities=12%  Similarity=-0.009  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhh
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFL   52 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l   52 (164)
                      +++++.+|..+++.+.+.......  ..+..+.|++.|+|.|..+..+...+
T Consensus       182 l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~  231 (250)
T 1njg_A          182 LKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA  231 (250)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            578999999999998774322221  13567789999999999887765443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=80.65  E-value=5  Score=30.46  Aligned_cols=146  Identities=13%  Similarity=0.109  Sum_probs=80.7

Q ss_pred             CCCCCHHHHHHHHHHhhcC---CCCCCchHHHHHHHHHHHh---------cCChhHHHHHhhh-hc-----cC---CHHH
Q 043926            1 MKALMFNHALELFSRHALR---QNYPDVGYEELSRKVMEYA---------QGVPSALKVLGCF-LF-----ER---EKEV   59 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~iv~~c---------~glPLAl~~~g~~-l~-----~~---~~~~   59 (164)
                      +++++.++..+++...+..   .....   .+..+.+++.+         +|.|..+..+... ..     +.   +...
T Consensus       190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~  266 (389)
T 1fnn_A          190 FSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED  266 (389)
T ss_dssp             CCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred             eCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence            4688999999999887521   11112   35677788888         6876544333222 11     11   2233


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHhhhCcChhHHHHHhhhhhcc---CC--CCHHHHHHHHHH----cCCCC------ccce
Q 043926           60 WENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFL---NG--EDVYSVMKFLDT----SGFYP------EIGI  124 (164)
Q Consensus        60 w~~~l~~l~~~~~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp---~~--~~~~~l~~lw~~----~g~~~------~~~l  124 (164)
                      ...+......       ..+.-.+..|+++.+.++..++.+.   .+  .+...+...+..    .|..+      ..++
T Consensus       267 v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l  339 (389)
T 1fnn_A          267 VRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYL  339 (389)
T ss_dssp             HHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            3333322211       1123335678888888888888664   22  355555444333    33222      1367


Q ss_pred             -Eecccccceee-C-------CeEe-------ecHHHHHHHHHHHhhc
Q 043926          125 -ILIDKSLIAVS-C-------NKIT-------MHDLLQGLGREIVQQK  156 (164)
Q Consensus       125 -~L~~~~Ll~~~-~-------~~~~-------mHdl~r~~a~~~~~~e  156 (164)
                       .|.++++|... .       |+|+       .|+++..+...+..+|
T Consensus       340 ~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~  387 (389)
T 1fnn_A          340 NDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE  387 (389)
T ss_dssp             HHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence             89999999875 3       3332       4577777776666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	3e-14

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 66.4 bits (161), Expect = 3e-14
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 1   MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVW 60
           + +L  +   +    + +     +   E++  K +E + G P+ L +       +  E  
Sbjct: 182 VTSLEIDECYDFLEAYGMPMPVGE-KEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKM 240

Query: 61  ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIF 94
                KL       ++ +   SY  L    +   
Sbjct: 241 AQLNNKLESRGLVGVECITPYSYKSLAMALQRCV 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.81
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	92.65

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=4.5e-21  Score=144.43  Aligned_cols=96  Identities=14%  Similarity=0.101  Sum_probs=85.8

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcchhhHHHHHH
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLK   80 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~~~l~~~l~   80 (164)
                      |++|+.+|||+||++++|+...+ +..++++++|+++|+|+||||+++|+.|+.++.+.|....++|.......+..++.
T Consensus       182 l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~  260 (277)
T d2a5yb3         182 VTSLEIDECYDFLEAYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITP  260 (277)
T ss_dssp             CCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSS
T ss_pred             CCCCCHHHHHHHHHHHhCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            57899999999999999865543 36678899999999999999999999999999999999999998777788999999


Q ss_pred             HhhhCcChhHHHHHhhh
Q 043926           81 LSYDGLDDKEKNIFLDV   97 (164)
Q Consensus        81 ~sy~~L~~~~k~~fl~~   97 (164)
                      +||+.||+++|+||.++
T Consensus       261 ~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         261 YSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             SSSSSHHHHHHHHHHTS
T ss_pred             HHHhcccHHHHHHHHhC
Confidence            99999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.65  E-value=0.15  Score=35.21  Aligned_cols=50  Identities=20%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhcc
Q 043926            1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFE   54 (164)
Q Consensus         1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~   54 (164)
                      |++++.+|+.+++.+..-......++    .++|.+.++|.|..|..+|..+..
T Consensus       205 L~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~~  254 (283)
T d2fnaa2         205 LKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLD  254 (283)
T ss_dssp             ECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHhhhhhcCCCHHH----HHHHHHHhCCCHHHHHHHHHHHHh
Confidence            46899999999998765221222222    468999999999999999877654