Citrus Sinensis ID: 043927

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MSFAAAAVPLNHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEcccccccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHHccccccccccccccccccHHHHHHHHHHccccEEccccccEEEEcccccHHHHHHHcccHHHcccccccccccEEEEEEEEEEEccccccEEEEEEEEccccc
Coil and Loop (DISEMBL)
msfaaaavplnhasggpptggsndALYRELWHAcagplatlpcegqrvyyfpqghmEQLEASMHQELEqqmpsfnlpskilCKVVNvqrraepetdEVYAQITLLPEPD
Flexible Loop (DISEMBL)
MSFAAaavplnhasggpptGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVVNVQRraepetdevyaqitllpepd
Low Complexity Region (SEG)
MSFAAAAVPLNHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD
Disordered region (IsUnstruct)
************************ALYRELWHACAGPLATLPCEGQRVYYFPQGH********************LPSKILCKVVNVQR********VYAQI*******
Disordered Region (DISOPRED)
***************************RELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPE**
Disordered Region (DISEMBL)
MSFAAAAVPLNHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD
Disordered Region (DISPRO)
**********************NDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFAAAAVPLNHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q8L7G0	665	Auxin response factor 1 O	yes	no	0.899	0.147	0.838	3e-43
Q0JCZ4	673	Auxin response factor 9 O	yes	no	0.834	0.135	0.714	2e-34
Q6YVY0	678	Auxin response factor 7 O	no	no	0.788	0.126	0.755	1e-33
Q94JM3	859	Auxin response factor 2 O	no	no	0.761	0.096	0.710	1e-31
Q5JK20	808	Auxin response factor 4 O	no	no	0.825	0.111	0.6	3e-28
Q9ZPY6	622	Auxin response factor 11	no	no	0.825	0.144	0.637	3e-27
A2ZET6	853	Auxin response factor 23	N/A	no	0.752	0.096	0.658	3e-27
Q2R3F5	853	Auxin response factor 23	no	no	0.752	0.096	0.658	3e-27
Q2QQX6	841	Auxin response factor 24	no	no	0.770	0.099	0.658	3e-27
Q9C5W9	602	Auxin response factor 18	no	no	0.954	0.172	0.533	5e-25

>sp|Q8L7G0|ARFA_ARATH Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 89/99 (89%), Gaps = 1/99 (1%)

Query: 11  NHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQ 70
           NH+SG  P G  +DAL RELWHACAGPL TLP EG+RVYYFP+GHMEQLEASMHQ LEQQ
Sbjct: 5   NHSSG-KPGGVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63

Query: 71  MPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           MPSFNLPSKILCKV+N+QRRAEPETDEVYAQITLLPE D
Sbjct: 64  MPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELD 102

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JCZ4|ARFI_ORYSJ Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/91 (71%), Positives = 77/91 (84%)

Query: 19  TGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPS 78
           +G  +DAL+RELWHACAGPL T+P  G+RVYYFPQGHMEQLEAS +Q+L+Q +P FNLPS
Sbjct: 14  SGTCSDALFRELWHACAGPLVTVPKRGERVYYFPQGHMEQLEASTNQQLDQYLPMFNLPS 73

Query: 79  KILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           KILC VVNV+ RAE ++DEVYAQI L PE D
Sbjct: 74  KILCSVVNVELRAEADSDEVYAQIMLQPEAD 104

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6YVY0|ARFG_ORYSJ Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 74/86 (86%)

Query: 24  DALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCK 83
           DALYRELWHACAGPL T+P +G+ VYYFPQGHMEQLEAS  Q+L+Q +P FNLPSKILCK
Sbjct: 21  DALYRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFNLPSKILCK 80

Query: 84  VVNVQRRAEPETDEVYAQITLLPEPD 109
           VVNV+ RAE ++DEVYAQI L PE D
Sbjct: 81  VVNVELRAETDSDEVYAQIMLQPEAD 106

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94JM3|ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 72/83 (86%)

Query: 25  ALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKV 84
           ALYRELWHACAGPL T+P +  RV+YFPQGH+EQ+EAS +Q  EQQMP ++LPSK+LC+V
Sbjct: 57  ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 116

Query: 85  VNVQRRAEPETDEVYAQITLLPE 107
           +NV  +AE +TDEVYAQITLLPE
Sbjct: 117 INVDLKAEADTDEVYAQITLLPE 139

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JK20|ARFD_ORYSJ Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 72/90 (80%)

Query: 20  GGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSK 79
             + D LY ELWHACAGPL T+P  G  V+YFPQGH+EQ+EASM+Q  + QM  ++LPSK
Sbjct: 15  SSTGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSK 74

Query: 80  ILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           +LC+V+NV+ +AE +TDEVYAQ+ L+PEP+
Sbjct: 75  LLCRVLNVELKAEQDTDEVYAQVMLMPEPE 104

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZPY6|ARFK_ARATH Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3

 Score =  120 bits (300), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 1/91 (1%)

Query: 20  GGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQE-LEQQMPSFNLPS 78
           G ++D LY ELW ACAGPL  +P  G+RV+YFPQGHMEQL AS +Q  ++Q++P FNLP 
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

Query: 79  KILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           KILC+V++V  +AE ETDEVYAQITL PE D
Sbjct: 93  KILCRVLSVTLKAEHETDEVYAQITLQPEED 123

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|A2ZET6|ARFW_ORYSI Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 70/82 (85%)

Query: 26  LYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVV 85
           L+ ELW ACAGPL T+P  G++V+YFPQGH+EQ+EAS +Q  EQ+M  +NLP KILC+V+
Sbjct: 38  LFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVM 97

Query: 86  NVQRRAEPETDEVYAQITLLPE 107
           NV+ +AEP+TDEVYAQ+TLLPE
Sbjct: 98  NVELKAEPDTDEVYAQLTLLPE 119

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q2R3F5|ARFW_ORYSJ Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 70/82 (85%)

Query: 26  LYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVV 85
           L+ ELW ACAGPL T+P  G++V+YFPQGH+EQ+EAS +Q  EQ+M  +NLP KILC+V+
Sbjct: 38  LFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVM 97

Query: 86  NVQRRAEPETDEVYAQITLLPE 107
           NV+ +AEP+TDEVYAQ+TLLPE
Sbjct: 98  NVELKAEPDTDEVYAQLTLLPE 119

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QQX6|ARFX_ORYSJ Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 69/85 (81%), Gaps = 1/85 (1%)

Query: 24  DALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQ-MPSFNLPSKILC 82
           D L+ ELW ACAGPL T+P  G+RV+Y PQGH+EQ+EAS +Q  EQQ  P +NLP KI C
Sbjct: 27  DGLFVELWRACAGPLVTVPAVGERVFYLPQGHIEQVEASTNQVAEQQGAPLYNLPWKIPC 86

Query: 83  KVVNVQRRAEPETDEVYAQITLLPE 107
           KV+NV+ +AEP+TDEVYAQ+TLLPE
Sbjct: 87  KVMNVELKAEPDTDEVYAQLTLLPE 111

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C5W9|ARFR_ARATH Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 6   AAVPLNHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQ 65
           A+V  +   G   +    D LY ELW  CAGPL  +P   +RV+YFPQGHMEQL AS +Q
Sbjct: 2   ASVEGDDDFGSSSSRSYQDQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQ 61

Query: 66  EL-EQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
            +  +++P F+LP KILC+V++V  +AE ETDEVYAQITL PE D
Sbjct: 62  GINSEEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEED 106

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
224119856	660	predicted protein [Populus trichocarpa]	0.917	0.151	0.891	1e-47
224129786	662	predicted protein [Populus trichocarpa]	0.963	0.158	0.818	8e-45
269986107	681	auxin response factor [Dimocarpus longan	0.917	0.146	0.91	5e-43
255573832	671	Auxin response factor, putative [Ricinus	0.871	0.141	0.863	1e-42
334183431	660	auxin response factor 1 [Arabidopsis tha	0.899	0.148	0.838	1e-41
30696352	662	auxin response factor 1 [Arabidopsis tha	0.899	0.148	0.838	1e-41
22136676	662	auxin response factor 1 [Arabidopsis tha	0.899	0.148	0.838	1e-41
15218904	665	auxin response factor 1 [Arabidopsis tha	0.899	0.147	0.838	1e-41
379323186	665	auxin response factor 1 [Brassica rapa s	0.862	0.141	0.851	2e-41
356520147	674	PREDICTED: auxin response factor 1-like	0.880	0.142	0.843	3e-41

>gi|224119856|ref|XP_002331079.1| predicted protein [Populus trichocarpa] gi|222872807|gb|EEF09938.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/101 (89%), Positives = 94/101 (93%), Gaps = 1/101 (0%)

Query: 10  LNHASGGPPT-GGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELE 68
           +NH SGG P  GG NDALY+ELWHACAGPL TLPCEG+RVYYFPQGHMEQLEASMHQ +E
Sbjct: 1   MNHTSGGNPHPGGCNDALYKELWHACAGPLVTLPCEGERVYYFPQGHMEQLEASMHQGME 60

Query: 69  QQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           QQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD
Sbjct: 61  QQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129786|ref|XP_002328802.1| predicted protein [Populus trichocarpa] gi|222839100|gb|EEE77451.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 95/110 (86%), Gaps = 5/110 (4%)

Query: 1   MSFAAAAVPLNHASGGPP-TGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQL 59
           M+FAA    +NH SGG P  GG NDALY+ELWHACAGPL TLP EG+ VYYFPQGHMEQL
Sbjct: 1   MAFAA----MNHTSGGNPHAGGCNDALYKELWHACAGPLVTLPREGELVYYFPQGHMEQL 56

Query: 60  EASMHQELEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           EASMHQ +E QMP FNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD
Sbjct: 57  EASMHQGMEPQMPLFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269986107|gb|ACX68650.3| auxin response factor [Dimocarpus longan]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 95/100 (95%)

Query: 10  LNHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQ 69
           LNH+SGGP +GGS DALYRELWHACAGPL +LP EG+RVYYFPQGHMEQLEASMHQ LEQ
Sbjct: 11  LNHSSGGPLSGGSTDALYRELWHACAGPLVSLPREGERVYYFPQGHMEQLEASMHQGLEQ 70

Query: 70  QMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           QMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD
Sbjct: 71  QMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 110

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573832|ref|XP_002527835.1| Auxin response factor, putative [Ricinus communis] gi|223532759|gb|EEF34538.1| Auxin response factor, putative [Ricinus communis]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/95 (86%), Positives = 87/95 (91%)

Query: 15  GGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSF 74
           G P TGG NDALY+ELWHACAGPL  LP EG+RVYYFPQGHMEQLEASMHQ LE QMPSF
Sbjct: 4   GQPHTGGCNDALYKELWHACAGPLVNLPREGERVYYFPQGHMEQLEASMHQGLEPQMPSF 63

Query: 75  NLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           +LPSKILCKVVNVQR+AEPETDEVYAQITLLP+PD
Sbjct: 64  DLPSKILCKVVNVQRKAEPETDEVYAQITLLPDPD 98

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183431|ref|NP_001185266.1| auxin response factor 1 [Arabidopsis thaliana] gi|332195494|gb|AEE33615.1| auxin response factor 1 [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 89/99 (89%), Gaps = 1/99 (1%)

Query: 11  NHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQ 70
           NH+SG  P G  +DAL RELWHACAGPL TLP EG+RVYYFP+GHMEQLEASMHQ LEQQ
Sbjct: 5   NHSSG-KPGGVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63

Query: 71  MPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           MPSFNLPSKILCKV+N+QRRAEPETDEVYAQITLLPE D
Sbjct: 64  MPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELD 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696352|ref|NP_849830.1| auxin response factor 1 [Arabidopsis thaliana] gi|332195492|gb|AEE33613.1| auxin response factor 1 [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 89/99 (89%), Gaps = 1/99 (1%)

Query: 11  NHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQ 70
           NH+SG  P G  +DAL RELWHACAGPL TLP EG+RVYYFP+GHMEQLEASMHQ LEQQ
Sbjct: 5   NHSSG-KPGGVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63

Query: 71  MPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           MPSFNLPSKILCKV+N+QRRAEPETDEVYAQITLLPE D
Sbjct: 64  MPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELD 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22136676|gb|AAM91657.1| auxin response factor 1 [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 89/99 (89%), Gaps = 1/99 (1%)

Query: 11  NHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQ 70
           NH+SG  P G  +DAL RELWHACAGPL TLP EG+RVYYFP+GHMEQLEASMHQ LEQQ
Sbjct: 5   NHSSG-KPGGVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63

Query: 71  MPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           MPSFNLPSKILCKV+N+QRRAEPETDEVYAQITLLPE D
Sbjct: 64  MPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELD 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218904|ref|NP_176184.1| auxin response factor 1 [Arabidopsis thaliana] gi|79320256|ref|NP_001031208.1| auxin response factor 1 [Arabidopsis thaliana] gi|46395894|sp|Q8L7G0.2|ARFA_ARATH RecName: Full=Auxin response factor 1 gi|5080809|gb|AAD39318.1|AC007258_7 auxin response factor 1 [Arabidopsis thaliana] gi|2245378|gb|AAC49751.1| auxin response factor 1 [Arabidopsis thaliana] gi|27754247|gb|AAO22577.1| auxin response factor 1 [Arabidopsis thaliana] gi|222423864|dbj|BAH19896.1| AT1G59750 [Arabidopsis thaliana] gi|332195491|gb|AEE33612.1| auxin response factor 1 [Arabidopsis thaliana] gi|332195493|gb|AEE33614.1| auxin response factor 1 [Arabidopsis thaliana]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 89/99 (89%), Gaps = 1/99 (1%)

Query: 11  NHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQ 70
           NH+SG  P G  +DAL RELWHACAGPL TLP EG+RVYYFP+GHMEQLEASMHQ LEQQ
Sbjct: 5   NHSSG-KPGGVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63

Query: 71  MPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           MPSFNLPSKILCKV+N+QRRAEPETDEVYAQITLLPE D
Sbjct: 64  MPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELD 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379323186|gb|AFD01292.1| auxin response factor 1 [Brassica rapa subsp. pekinensis]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/94 (85%), Positives = 85/94 (90%)

Query: 16  GPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFN 75
           G P G  +DAL RELWHACAGPL TLP EG+RVYYFP+GHMEQLEASMHQ LEQQMPSFN
Sbjct: 9   GKPGGALSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFN 68

Query: 76  LPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           LPSKILCKV+N+QRRAEPETDEVYAQITLLPE D
Sbjct: 69  LPSKILCKVINIQRRAEPETDEVYAQITLLPEAD 102

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520147|ref|XP_003528726.1| PREDICTED: auxin response factor 1-like [Glycine max]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/96 (84%), Positives = 85/96 (88%)

Query: 14  SGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPS 73
           SGG  TG  ND LY+ELWHACAGPL TLP EG+RVYYFPQGHMEQLEASM++ LEQQMPS
Sbjct: 7   SGGIHTGAINDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMYEGLEQQMPS 66

Query: 74  FNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
           FNLPSKILCKVVNV  RAEPETDEVYAQITLLPE D
Sbjct: 67  FNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEAD 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2025991	665	ARF1 "auxin response factor 1"	0.899	0.147	0.838	1e-40
TAIR|locus:2174013	859	ARF2 "auxin response factor 2"	0.761	0.096	0.710	9.8e-29
TAIR|locus:2039124	622	ARF11 "auxin response factor 1	0.825	0.144	0.637	3.6e-26
TAIR|locus:2076765	602	ARF18 "auxin response factor 1	0.871	0.157	0.562	2.8e-23
TAIR|locus:2138096	638	ARF9 "auxin response factor 9"	0.779	0.133	0.625	1.9e-22
TAIR|locus:2008991	546	ARF13 "AUXIN RESPONSE FACTOR 1	0.752	0.150	0.536	2.5e-21
TAIR|locus:2037169	222	ARF23 "auxin response factor 2	0.798	0.391	0.471	6.3e-21
TAIR|locus:2014731	605	ARF14 "auxin response factor 1	0.798	0.143	0.482	3.1e-20
TAIR|locus:2175098	788	ARF4 "auxin response factor 4"	0.853	0.118	0.510	3.2e-20
TAIR|locus:2036288	598	ARF22 "auxin response factor 2	0.798	0.145	0.471	1.1e-19

TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 1.0e-40, P = 1.0e-40
 Identities = 83/99 (83%), Positives = 89/99 (89%)

Query:    11 NHASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQ 70
             NH+SG  P G  +DAL RELWHACAGPL TLP EG+RVYYFP+GHMEQLEASMHQ LEQQ
Sbjct:     5 NHSSG-KPGGVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQ 63

Query:    71 MPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
             MPSFNLPSKILCKV+N+QRRAEPETDEVYAQITLLPE D
Sbjct:    64 MPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELD 102

GO:0003677 "DNA binding" evidence=IEA;IDA;IPI

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010150 "leaf senescence" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 9.8e-29, P = 9.8e-29
 Identities = 59/83 (71%), Positives = 72/83 (86%)

Query:    25 ALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKV 84
             ALYRELWHACAGPL T+P +  RV+YFPQGH+EQ+EAS +Q  EQQMP ++LPSK+LC+V
Sbjct:    57 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 116

Query:    85 VNVQRRAEPETDEVYAQITLLPE 107
             +NV  +AE +TDEVYAQITLLPE
Sbjct:   117 INVDLKAEADTDEVYAQITLLPE 139

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0010227 "floral organ abscission" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 3.6e-26, P = 3.6e-26
 Identities = 58/91 (63%), Positives = 72/91 (79%)

Query:    20 GGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQEL-EQQMPSFNLPS 78
             G ++D LY ELW ACAGPL  +P  G+RV+YFPQGHMEQL AS +Q + +Q++P FNLP 
Sbjct:    33 GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

Query:    79 KILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
             KILC+V++V  +AE ETDEVYAQITL PE D
Sbjct:    93 KILCRVLSVTLKAEHETDEVYAQITLQPEED 123

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 2.8e-23, P = 2.8e-23
 Identities = 54/96 (56%), Positives = 68/96 (70%)

Query:    15 GGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELE-QQMPS 73
             G   +    D LY ELW  CAGPL  +P   +RV+YFPQGHMEQL AS +Q +  +++P 
Sbjct:    11 GSSSSRSYQDQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPV 70

Query:    74 FNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109
             F+LP KILC+V++V  +AE ETDEVYAQITL PE D
Sbjct:    71 FDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEED 106

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 55/88 (62%), Positives = 63/88 (71%)

Query:    20 GGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQ-ELEQQMPSFNLPS 78
             GG  + LY ELW  CAGPL  +P   +RVYYFPQGHMEQLEAS  Q +L    P F LP 
Sbjct:     5 GG--EYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPP 62

Query:    79 KILCKVVNVQRRAEPETDEVYAQITLLP 106
             KILC V+NV  +AE +TDEVYAQITL+P
Sbjct:    63 KILCNVMNVSLQAEKDTDEVYAQITLIP 90

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2008991 ARF13 "AUXIN RESPONSE FACTOR 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 44/82 (53%), Positives = 61/82 (74%)

Query:    26 LYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVV 85
             +Y +LW+ CAGPL  LP  G++VYYFPQGH+E +E S   EL+   P F+LPSK+ C+VV
Sbjct:    22 MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 81

Query:    86 NVQRRAEPETDEVYAQITLLPE 107
              + R+ +  TDEVYAQI+L+P+
Sbjct:    82 AIDRKVDKNTDEVYAQISLMPD 103

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2037169 ARF23 "auxin response factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 41/87 (47%), Positives = 61/87 (70%)

Query:    21 GSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKI 80
             GS   +Y +LW  CAGPL  +P  G++VYYFPQGH+E +EAS  +EL +  P+ +LPSK+
Sbjct:    19 GSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKL 78

Query:    81 LCKVVNVQRRAEPETDEVYAQITLLPE 107
              C+V+ +  + E  +DE Y +ITL+P+
Sbjct:    79 QCRVIAIHLKVENNSDETYVEITLMPD 105

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2014731 ARF14 "auxin response factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 42/87 (48%), Positives = 61/87 (70%)

Query:    21 GSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKI 80
             GS   +Y +LW  CAGPL  +P  G++VYYFPQGH+E +EAS  +EL +  P  + PSK+
Sbjct:    19 GSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKL 78

Query:    81 LCKVVNVQRRAEPETDEVYAQITLLPE 107
              C+V+ +Q + E  +DE YA+ITL+P+
Sbjct:    79 QCRVIAIQLKVENNSDETYAEITLMPD 105

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 48/94 (51%), Positives = 64/94 (68%)

Query:    13 ASGGPPTGGSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMP 72
             +S    + GS  ++Y ELWHACAGPL  LP +G  V YFPQGH+EQ +A +      ++P
Sbjct:    49 SSSSSSSTGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIP 107

Query:    73 SFNLPSKILCKVVNVQRRAEPETDEVYAQITLLP 106
              F+L  +I+C+VVNVQ  A  +TDEVY Q+TLLP
Sbjct:   108 KFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLP 141

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010158 "abaxial cell fate specification" evidence=IGI

GO:0010050 "vegetative phase change" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2036288 ARF22 "auxin response factor 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 41/87 (47%), Positives = 62/87 (71%)

Query:    21 GSNDALYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKI 80
             GS   +Y +LW  CAGPL  +P  G+++YYFPQG++E +EAS  +EL +  P  +LPSK+
Sbjct:    19 GSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKL 78

Query:    81 LCKVVNVQRRAEPETDEVYAQITLLPE 107
              C+V+ +Q + E  +DE YA+ITL+P+
Sbjct:    79 QCRVIAIQLKVENNSDETYAEITLMPD 105

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7G0	ARFA_ARATH	No assigned EC number	0.8383	0.8990	0.1473	yes	no
Q0JCZ4	ARFI_ORYSJ	No assigned EC number	0.7142	0.8348	0.1352	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1500013 hypothetical protein (660 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG0644	1113	consensus Uncharacterized conserved protein, conta	84.54

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=84.54  E-value=1.1  Score=42.61  Aligned_cols=63  Identities=29%  Similarity=0.450  Sum_probs=36.0

Q ss_pred             CCCCCCCeEEEecCchHHHHhhhhhhh--hhhhCCCCCCCCcceEEEEEeeeeccCCCCeeeeEEE
Q 043927           40 TLPCEGQRVYYFPQGHMEQLEASMHQE--LEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQIT  103 (109)
Q Consensus        40 ~lP~vgs~V~YFPQGH~Eq~~as~~~~--~~~~~p~~~lP~~ilCrV~~V~L~AD~~TDEVYAqi~  103 (109)
                      -||..|.-|.||-|||-|-+.+..--+  +.... ..++-..=.|.|..+..--=+-+..--.+++
T Consensus       872 yipQmgDEViyfrQghqeyl~~~~~n~~~~~~~~-p~~~~~v~~~kv~kl~~~~y~~~~~s~c~m~  936 (1113)
T KOG0644|consen  872 YIPQMGDEVIYFRQGHQEYLEAVRLNNIELNNKE-PWNKMAVEICKVEKLVYITYPGSGDSCCKMK  936 (1113)
T ss_pred             ccccccceeehhhhhhHHHHhhhhhccccccccC-cccccchhhheeeeeeeeeccCCCcchheee
Confidence            489999999999999999988753211  11101 1122222367777766544333333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00